Citrus Sinensis ID: 026122

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240---
Protein Sequence
MPFFNGTGYPFSVFMFMFFYLGLFLKKRKQNLQKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDPGTPAKVPL
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHHHHHHHHHHHccccccEEcccHHHHHHHHHHHHccccccccccccccccccccccccEEEEccccccccHHHHHHccccEEEEEEccHHHHHHHHHHHHHHccccEEEEEEccccccccccccccccEEEEEccccHHHHHHHHccccccccEEEEEcccccHHHHHHHHHHHHHHccEEEEEEEEEcccccccEEEEEEEEEccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHcccccHHHcHHHcHcccccccccccEEEEEccccccccccEEEEccccEEEEEHHHHHHHHHHHHHHHHHccccEEEEEccHHHHcccHHHHHHHcHHHHHHHHHHHHHHHHcccHEccccEEEEEccccHHHHHHHHHHHHHHHccEEEEEEEEEccccccccEEEEEEEcccccccccccccccccccc
Coil and Loop (DISEMBL)
mpffngtgypfsVFMFMFFYLGLFLKKRKQNLQKMNLTAVKDVNEVMERHiddslaiippiknsytshcdsscnsnlklvdvgtgaglpgLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAetlgkdvsfrEQYDVAVARAVAEMRILAEYCLPLVRVGGLFvaakghdpqeevkNSERAVQLMGASLLQLcsvesqspfgqrtAVVCLksrrtpkkyprdpgtpakvpl
Flexible Loop (DISEMBL)
mpffngtgypfSVFMFMFFYLGLFLKKRKQNLQKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAEtlgkdvsfreQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVesqspfgqrtavvclksrrtpkkyprdpgtpakvpl
Low Complexity Region (SEG)
MPFFNGTGYPFSVfmfmffylglflKKRKQNLQKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDPGTPAKVPL
Disordered region (IsUnstruct)
**FFNGTGYPFSVFMFMFFYLGLFLKKRKQNLQKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAK***************QLMGASLLQLCSVE****FGQRTAVVCL*********************
Disordered Region (DISOPRED)
MPFFNGTGYPFSVFMFMFFYLGLFLKKRKQNLQKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDPGTP**VP*
Disordered Region (DISEMBL)
MPFFNGTGYPFSVFMFMFFYLGLFLKKRKQNLQKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRT****************
Disordered Region (DISPRO)
*PFFNGTGYPFSVFMFMFFYLGLFLKKRKQNLQKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRD*********
Transmembrane Helix (TMHMM)
oooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPFFNGTGYPFSVFMFMFFYLGLFLKKRKQNLQKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDPGTPAKVPL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	243	2.2.26 [Sep-21-2011]
A3DHY6	242	Ribosomal RNA small subun	yes	no	0.810	0.814	0.446	9e-45
A6TXE3	239	Ribosomal RNA small subun	yes	no	0.818	0.832	0.436	3e-42
Q8NUF9	239	Ribosomal RNA small subun	yes	no	0.823	0.836	0.426	7e-42
A8YYR9	239	Ribosomal RNA small subun	yes	no	0.823	0.836	0.426	7e-42
Q6G5W6	239	Ribosomal RNA small subun	yes	no	0.823	0.836	0.426	7e-42
A6QKK0	239	Ribosomal RNA small subun	yes	no	0.823	0.836	0.426	7e-42
Q5HCI5	239	Ribosomal RNA small subun	yes	no	0.823	0.836	0.426	7e-42
Q2FUQ4	239	Ribosomal RNA small subun	yes	no	0.823	0.836	0.426	7e-42
Q2FDF0	239	Ribosomal RNA small subun	N/A	no	0.823	0.836	0.426	7e-42
Q2YZC0	239	Ribosomal RNA small subun	yes	no	0.823	0.836	0.426	1e-41

>sp|A3DHY6|RSMG_CLOTH Ribosomal RNA small subunit methyltransferase G OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=rsmG PE=3 SV=1

 Score =  180 bits (456), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 95/213 (44%), Positives = 135/213 (63%), Gaps = 16/213 (7%)

Query: 33  QKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLV 92
           QKMNLTA++D  E++ +H  DS++I P IK+            NL L+DVGTGAG PG+ 
Sbjct: 43  QKMNLTAIEDDEEIILKHFIDSISICPIIKDK-----------NLALIDVGTGAGFPGIP 91

Query: 93  LAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA 152
           + I  P+ KV LL+S+ KR  FL   +    L ++  V  RAE  G D  +RE+YD++VA
Sbjct: 92  VKIVFPELKVKLLDSLEKRTKFLNEVIERLDLKDISTVHARAEEKGVDPDYREKYDISVA 151

Query: 153 RAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSP 212
           RAVA + +L EYCLP V+VGG F+A KG+   EEV+NS++A++++G  +  +  +E   P
Sbjct: 152 RAVASLPVLLEYCLPFVKVGGCFIAMKGN-STEEVENSKKALEILGGKIEDI--LEFNLP 208

Query: 213 FG--QRTAVVCLKSRRTPKKYPRDPGTPAKVPL 243
           F   +R  +V  K R+TP KYPR  G P+K PL
Sbjct: 209 FSDIKRNVIVIKKFRQTPTKYPRKSGKPSKNPL 241

Specifically methylates the N7 position of a guanosine in 16S rRNA.
Clostridium thermocellum (strain ATCC 27405 / DSM 1237) (taxid: 203119)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|A6TXE3|RSMG_ALKMQ Ribosomal RNA small subunit methyltransferase G OS=Alkaliphilus metalliredigens (strain QYMF) GN=rsmG PE=3 SV=1

 Score =  171 bits (434), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 93/213 (43%), Positives = 132/213 (61%), Gaps = 14/213 (6%)

Query: 33  QKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLV 92
           +KMNLTA+ +  EVM +H  DSL+ I   ++ Y     +       ++DVGTGAG PG+ 
Sbjct: 38  EKMNLTAITEEEEVMVKHFLDSLSCI---QSQYLKEEGT-------MIDVGTGAGFPGIP 87

Query: 93  LAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA 152
           L +  P  K+TLL+S+NKR  FL+       L +V  V GRAE  G++ + REQYD AVA
Sbjct: 88  LKVYFPKLKLTLLDSLNKRVEFLKEVSQELGLEDVNFVHGRAEECGQEETHREQYDYAVA 147

Query: 153 RAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSP 212
           RAVA + +L EYCLP V+VGG F+  KG   +EE++NS+ A+ ++G  +++    E   P
Sbjct: 148 RAVASLNVLVEYCLPFVKVGGYFICQKGPQLKEEIQNSQNAITVLGGKVVE--QKEITLP 205

Query: 213 FGQRTA--VVCLKSRRTPKKYPRDPGTPAKVPL 243
           F   T   +V  K ++TP KYPR PGTP+K P+
Sbjct: 206 FSDITHSLLVIEKIKQTPTKYPRKPGTPSKKPI 238

Specifically methylates the N7 position of a guanosine in 16S rRNA.

Alkaliphilus metalliredigens (strain QYMF) (taxid: 293826)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q8NUF9|RSMG_STAAW Ribosomal RNA small subunit methyltransferase G OS=Staphylococcus aureus (strain MW2) GN=rsmG PE=3 SV=1

 Score =  170 bits (431), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 90/211 (42%), Positives = 127/211 (60%), Gaps = 11/211 (5%)

Query: 33  QKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLV 92
           +KMNLT++ D ++V  +H  DS+A  P     +        N  + + DVG GAG P + 
Sbjct: 37  EKMNLTSITDEHDVYLKHFYDSIA--PSFYFDF--------NQPISICDVGAGAGFPSIP 86

Query: 93  LAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA 152
           L I  P  KVT+++S+NKR  FL H  S  QL +V  +  RAET GK V +RE YDV  A
Sbjct: 87  LKIMFPQLKVTIVDSLNKRIQFLNHLASELQLQDVSFIHDRAETFGKGV-YRESYDVVTA 145

Query: 153 RAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSP 212
           RAVA + +L+E CLPLV+ GG FVA K    +EE++ ++ A+ ++G ++ +  + E    
Sbjct: 146 RAVARLSVLSELCLPLVKKGGQFVALKSSKGEEELEEAKFAISVLGGNVTETHTFELPED 205

Query: 213 FGQRTAVVCLKSRRTPKKYPRDPGTPAKVPL 243
            G+R   +  K R+TPKKYPR PGTP K PL
Sbjct: 206 AGERQMFIIDKKRQTPKKYPRKPGTPNKTPL 236

Specifically methylates the N7 position of guanosine in position 535 of 16S rRNA.

Staphylococcus aureus (strain MW2) (taxid: 196620)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|A8YYR9|RSMG_STAAT Ribosomal RNA small subunit methyltransferase G OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=rsmG PE=3 SV=1

 Score =  170 bits (431), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 90/211 (42%), Positives = 127/211 (60%), Gaps = 11/211 (5%)

Query: 33  QKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLV 92
           +KMNLT++ D ++V  +H  DS+A  P     +        N  + + DVG GAG P + 
Sbjct: 37  EKMNLTSITDEHDVYLKHFYDSIA--PSFYFDF--------NQPISICDVGAGAGFPSIP 86

Query: 93  LAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA 152
           L I  P  KVT+++S+NKR  FL H  S  QL +V  +  RAET GK V +RE YDV  A
Sbjct: 87  LKIMFPQLKVTIVDSLNKRIQFLNHLASELQLQDVSFIHDRAETFGKGV-YRESYDVVTA 145

Query: 153 RAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSP 212
           RAVA + +L+E CLPLV+ GG FVA K    +EE++ ++ A+ ++G ++ +  + E    
Sbjct: 146 RAVARLSVLSELCLPLVKKGGQFVALKSSKGEEELEEAKFAISVLGGNVTETHTFELPED 205

Query: 213 FGQRTAVVCLKSRRTPKKYPRDPGTPAKVPL 243
            G+R   +  K R+TPKKYPR PGTP K PL
Sbjct: 206 AGERQMFIIDKKRQTPKKYPRKPGTPNKTPL 236

Specifically methylates the N7 position of guanosine in position 535 of 16S rRNA.

Staphylococcus aureus (strain USA300 / TCH1516) (taxid: 451516)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q6G5W6|RSMG_STAAS Ribosomal RNA small subunit methyltransferase G OS=Staphylococcus aureus (strain MSSA476) GN=rsmG PE=3 SV=1

 Score =  170 bits (431), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 90/211 (42%), Positives = 127/211 (60%), Gaps = 11/211 (5%)

Query: 33  QKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLV 92
           +KMNLT++ D ++V  +H  DS+A  P     +        N  + + DVG GAG P + 
Sbjct: 37  EKMNLTSITDEHDVYLKHFYDSIA--PSFYFDF--------NQPISICDVGAGAGFPSIP 86

Query: 93  LAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA 152
           L I  P  KVT+++S+NKR  FL H  S  QL +V  +  RAET GK V +RE YDV  A
Sbjct: 87  LKIMFPQLKVTIVDSLNKRIQFLNHLASELQLQDVSFIHDRAETFGKGV-YRESYDVVTA 145

Query: 153 RAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSP 212
           RAVA + +L+E CLPLV+ GG FVA K    +EE++ ++ A+ ++G ++ +  + E    
Sbjct: 146 RAVARLSVLSELCLPLVKKGGQFVALKSSKGEEELEEAKFAISVLGGNVTETHTFELPED 205

Query: 213 FGQRTAVVCLKSRRTPKKYPRDPGTPAKVPL 243
            G+R   +  K R+TPKKYPR PGTP K PL
Sbjct: 206 AGERQMFIIDKKRQTPKKYPRKPGTPNKTPL 236

Specifically methylates the N7 position of guanosine in position 535 of 16S rRNA.

Staphylococcus aureus (strain MSSA476) (taxid: 282459)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|A6QKK0|RSMG_STAAE Ribosomal RNA small subunit methyltransferase G OS=Staphylococcus aureus (strain Newman) GN=rsmG PE=3 SV=1

 Score =  170 bits (431), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 90/211 (42%), Positives = 127/211 (60%), Gaps = 11/211 (5%)

Query: 33  QKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLV 92
           +KMNLT++ D ++V  +H  DS+A  P     +        N  + + DVG GAG P + 
Sbjct: 37  EKMNLTSITDEHDVYLKHFYDSIA--PSFYFDF--------NQPISICDVGAGAGFPSIP 86

Query: 93  LAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA 152
           L I  P  KVT+++S+NKR  FL H  S  QL +V  +  RAET GK V +RE YDV  A
Sbjct: 87  LKIMFPQLKVTIVDSLNKRIQFLNHLASELQLQDVSFIHDRAETFGKGV-YRESYDVVTA 145

Query: 153 RAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSP 212
           RAVA + +L+E CLPLV+ GG FVA K    +EE++ ++ A+ ++G ++ +  + E    
Sbjct: 146 RAVARLSVLSELCLPLVKKGGQFVALKSSKGEEELEEAKFAISVLGGNVTETHTFELPED 205

Query: 213 FGQRTAVVCLKSRRTPKKYPRDPGTPAKVPL 243
            G+R   +  K R+TPKKYPR PGTP K PL
Sbjct: 206 AGERQMFIIDKKRQTPKKYPRKPGTPNKTPL 236

Specifically methylates the N7 position of guanosine in position 535 of 16S rRNA.

Staphylococcus aureus (strain Newman) (taxid: 426430)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q5HCI5|RSMG_STAAC Ribosomal RNA small subunit methyltransferase G OS=Staphylococcus aureus (strain COL) GN=rsmG PE=3 SV=1

 Score =  170 bits (431), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 90/211 (42%), Positives = 127/211 (60%), Gaps = 11/211 (5%)

Query: 33  QKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLV 92
           +KMNLT++ D ++V  +H  DS+A  P     +        N  + + DVG GAG P + 
Sbjct: 37  EKMNLTSITDEHDVYLKHFYDSIA--PSFYFDF--------NQPISICDVGAGAGFPSIP 86

Query: 93  LAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA 152
           L I  P  KVT+++S+NKR  FL H  S  QL +V  +  RAET GK V +RE YDV  A
Sbjct: 87  LKIMFPQLKVTIVDSLNKRIQFLNHLASELQLQDVSFIHDRAETFGKGV-YRESYDVVTA 145

Query: 153 RAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSP 212
           RAVA + +L+E CLPLV+ GG FVA K    +EE++ ++ A+ ++G ++ +  + E    
Sbjct: 146 RAVARLSVLSELCLPLVKKGGQFVALKSSKGEEELEEAKFAISVLGGNVTETHTFELPED 205

Query: 213 FGQRTAVVCLKSRRTPKKYPRDPGTPAKVPL 243
            G+R   +  K R+TPKKYPR PGTP K PL
Sbjct: 206 AGERQMFIIDKKRQTPKKYPRKPGTPNKTPL 236

Specifically methylates the N7 position of guanosine in position 535 of 16S rRNA.

Staphylococcus aureus (strain COL) (taxid: 93062)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q2FUQ4|RSMG_STAA8 Ribosomal RNA small subunit methyltransferase G OS=Staphylococcus aureus (strain NCTC 8325) GN=rsmG PE=3 SV=1

 Score =  170 bits (431), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 90/211 (42%), Positives = 127/211 (60%), Gaps = 11/211 (5%)

Query: 33  QKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLV 92
           +KMNLT++ D ++V  +H  DS+A  P     +        N  + + DVG GAG P + 
Sbjct: 37  EKMNLTSITDEHDVYLKHFYDSIA--PSFYFDF--------NQPISICDVGAGAGFPSIP 86

Query: 93  LAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA 152
           L I  P  KVT+++S+NKR  FL H  S  QL +V  +  RAET GK V +RE YDV  A
Sbjct: 87  LKIMFPQLKVTIVDSLNKRIQFLNHLASELQLQDVSFIHDRAETFGKGV-YRESYDVVTA 145

Query: 153 RAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSP 212
           RAVA + +L+E CLPLV+ GG FVA K    +EE++ ++ A+ ++G ++ +  + E    
Sbjct: 146 RAVARLSVLSELCLPLVKKGGQFVALKSSKGEEELEEAKFAISVLGGNVTETHTFELPED 205

Query: 213 FGQRTAVVCLKSRRTPKKYPRDPGTPAKVPL 243
            G+R   +  K R+TPKKYPR PGTP K PL
Sbjct: 206 AGERQMFIIDKKRQTPKKYPRKPGTPNKTPL 236

Specifically methylates the N7 position of guanosine in position 535 of 16S rRNA.

Staphylococcus aureus (strain NCTC 8325) (taxid: 93061)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q2FDF0|RSMG_STAA3 Ribosomal RNA small subunit methyltransferase G OS=Staphylococcus aureus (strain USA300) GN=rsmG PE=3 SV=1

 Score =  170 bits (431), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 90/211 (42%), Positives = 127/211 (60%), Gaps = 11/211 (5%)

Query: 33  QKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLV 92
           +KMNLT++ D ++V  +H  DS+A  P     +        N  + + DVG GAG P + 
Sbjct: 37  EKMNLTSITDEHDVYLKHFYDSIA--PSFYFDF--------NQPISICDVGAGAGFPSIP 86

Query: 93  LAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA 152
           L I  P  KVT+++S+NKR  FL H  S  QL +V  +  RAET GK V +RE YDV  A
Sbjct: 87  LKIMFPQLKVTIVDSLNKRIQFLNHLASELQLQDVSFIHDRAETFGKGV-YRESYDVVTA 145

Query: 153 RAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSP 212
           RAVA + +L+E CLPLV+ GG FVA K    +EE++ ++ A+ ++G ++ +  + E    
Sbjct: 146 RAVARLSVLSELCLPLVKKGGQFVALKSSKGEEELEEAKFAISVLGGNVTETHTFELPED 205

Query: 213 FGQRTAVVCLKSRRTPKKYPRDPGTPAKVPL 243
            G+R   +  K R+TPKKYPR PGTP K PL
Sbjct: 206 AGERQMFIIDKKRQTPKKYPRKPGTPNKTPL 236

Specifically methylates the N7 position of guanosine in position 535 of 16S rRNA.

Staphylococcus aureus (strain USA300) (taxid: 367830)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q2YZC0|RSMG_STAAB Ribosomal RNA small subunit methyltransferase G OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=rsmG PE=3 SV=1

 Score =  170 bits (430), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 90/211 (42%), Positives = 127/211 (60%), Gaps = 11/211 (5%)

Query: 33  QKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLV 92
           +KMNLT++ D ++V  +H  DS+A  P     +        N  + + DVG GAG P + 
Sbjct: 37  EKMNLTSITDEHDVYLKHFYDSIA--PSFYFDF--------NQPISICDVGAGAGFPSIP 86

Query: 93  LAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA 152
           L I  P  KVT+++S+NKR  FL H  S  QL +V  +  RAET GK V +RE YDV  A
Sbjct: 87  LKIMFPQLKVTIVDSLNKRIQFLNHLASELQLQDVSFIHDRAETFGKGV-YRESYDVVTA 145

Query: 153 RAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSP 212
           RAVA + +L+E CLPLV+ GG FVA K    +EE++ ++ A+ ++G ++ +  + E    
Sbjct: 146 RAVARLSVLSELCLPLVKKGGQFVALKSSKGEEELEEAKFAISVLGGNVTETHTYELPED 205

Query: 213 FGQRTAVVCLKSRRTPKKYPRDPGTPAKVPL 243
            G+R   +  K R+TPKKYPR PGTP K PL
Sbjct: 206 AGERQMFIIDKKRQTPKKYPRKPGTPNKTPL 236

Specifically methylates the N7 position of guanosine in position 535 of 16S rRNA.

Staphylococcus aureus (strain bovine RF122 / ET3-1) (taxid: 273036)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	243
359491270	285	PREDICTED: ribosomal RNA small subunit m	0.913	0.778	0.762	1e-97
224121638	288	predicted protein [Populus trichocarpa]	0.905	0.763	0.769	3e-97
449469503	281	PREDICTED: ribosomal RNA small subunit m	0.909	0.786	0.733	2e-94
255540789	282	Methyltransferase gidB, putative [Ricinu	0.835	0.719	0.774	2e-91
356512958	274	PREDICTED: ribosomal RNA small subunit m	0.913	0.810	0.704	3e-89
357477267	518	Ribosomal RNA small subunit methyltransf	0.905	0.424	0.692	3e-86
240256423	292	glucose inhibited division protein B [Ar	0.913	0.760	0.677	1e-85
90568008	208	At5g50110 [Arabidopsis thaliana]	0.855	1.0	0.703	1e-83
10177222	329	unnamed protein product [Arabidopsis tha	0.893	0.659	0.665	5e-82
297792303	208	predicted protein [Arabidopsis lyrata su	0.855	1.0	0.679	7e-82

>gi|359491270|ref|XP_002283664.2| PREDICTED: ribosomal RNA small subunit methyltransferase G-like [Vitis vinifera] gi|297733841|emb|CBI15088.3| unnamed protein product [Vitis vinifera]

 Score =  361 bits (927), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 170/223 (76%), Positives = 196/223 (87%), Gaps = 1/223 (0%)

Query: 21  LGLFLKKRKQNLQKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLV 80
           + L++    Q  QKMNLTAV   +EVMERH+ DSLA+IPPI++SY +HCDSSCN N+ LV
Sbjct: 64  ISLYVDALLQWNQKMNLTAVTKADEVMERHVGDSLAMIPPIQSSYIAHCDSSCN-NISLV 122

Query: 81  DVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD 140
           DVG+G GLPGL+LAIACP WK+TLLESMNKRC+FLEHAVSLT L NVQ+VRGRAE LG++
Sbjct: 123 DVGSGPGLPGLILAIACPSWKITLLESMNKRCIFLEHAVSLTGLSNVQVVRGRAENLGQN 182

Query: 141 VSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGAS 200
           + FRE +DVAVARAVAEMRILAEYCLPLVRVGGLF+AAKGHDPQEEV+N+ERA+QLMGAS
Sbjct: 183 IGFREVFDVAVARAVAEMRILAEYCLPLVRVGGLFLAAKGHDPQEEVRNAERAIQLMGAS 242

Query: 201 LLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDPGTPAKVPL 243
           +LQLCSVES SPFGQRTA+VCLK   TP+KYPRDPGTP K PL
Sbjct: 243 VLQLCSVESHSPFGQRTAIVCLKDCPTPRKYPRDPGTPVKSPL 285

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121638|ref|XP_002318633.1| predicted protein [Populus trichocarpa] gi|222859306|gb|EEE96853.1| predicted protein [Populus trichocarpa]

 Score =  360 bits (923), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 170/221 (76%), Positives = 202/221 (91%), Gaps = 1/221 (0%)

Query: 23  LFLKKRKQNLQKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDV 82
           L++    Q  QKMNLTAV DV+EVMERHI+DSLAI+PPI++SY SHC++S +S +KLVDV
Sbjct: 69  LYVDTLLQWNQKMNLTAVTDVDEVMERHIEDSLAILPPIQDSYVSHCNASIDS-IKLVDV 127

Query: 83  GTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS 142
           GTGAGLPGLVLAIACP WKVTLLESMNKRC FLEHA+S+T L NV++VRGRAE LG++VS
Sbjct: 128 GTGAGLPGLVLAIACPAWKVTLLESMNKRCDFLEHAISVTGLSNVEVVRGRAENLGQNVS 187

Query: 143 FREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLL 202
           FRE++DVAVARAVAEMRILAEYCLPLVRVGGLF+AAKGHDPQEEV+N+ER+++LMG+S L
Sbjct: 188 FREKFDVAVARAVAEMRILAEYCLPLVRVGGLFIAAKGHDPQEEVRNAERSLKLMGSSTL 247

Query: 203 QLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDPGTPAKVPL 243
           QLCSVES+SP+GQRTA++C K R TP+KYPRDPGTPAK+PL
Sbjct: 248 QLCSVESRSPYGQRTAIICSKDRPTPRKYPRDPGTPAKLPL 288

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469503|ref|XP_004152459.1| PREDICTED: ribosomal RNA small subunit methyltransferase G-like [Cucumis sativus] gi|449527787|ref|XP_004170891.1| PREDICTED: ribosomal RNA small subunit methyltransferase G-like [Cucumis sativus]

 Score =  351 bits (900), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 162/221 (73%), Positives = 191/221 (86%)

Query: 23  LFLKKRKQNLQKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDV 82
           LF+    Q  QKMNLTA+ +VNEVMERH++DSLAIIPPI+N Y SHC +S   ++KLVDV
Sbjct: 61  LFVDALLQWNQKMNLTAITEVNEVMERHVEDSLAIIPPIRNLYMSHCSTSPCDDIKLVDV 120

Query: 83  GTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS 142
           GTGAGLPGL++AIACP+W+VTL+ESMNKRC+FLEHAV  T L NVQ+VRGRAE LG D+S
Sbjct: 121 GTGAGLPGLIIAIACPEWQVTLMESMNKRCLFLEHAVGHTGLTNVQVVRGRAENLGHDLS 180

Query: 143 FREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLL 202
            RE++DV VARAVAEMRILAEYCLP+VRVGGLF+AAKGHDP  EV N+E+A+++MGASLL
Sbjct: 181 LREKFDVVVARAVAEMRILAEYCLPMVRVGGLFLAAKGHDPLAEVTNAEKAIEMMGASLL 240

Query: 203 QLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDPGTPAKVPL 243
           Q+C VES SP+GQRTAVVC K R TP+KYPRDPGTPAK PL
Sbjct: 241 QICPVESHSPYGQRTAVVCFKERHTPRKYPRDPGTPAKSPL 281

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540789|ref|XP_002511459.1| Methyltransferase gidB, putative [Ricinus communis] gi|223550574|gb|EEF52061.1| Methyltransferase gidB, putative [Ricinus communis]

 Score =  341 bits (874), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 158/204 (77%), Positives = 186/204 (91%), Gaps = 1/204 (0%)

Query: 33  QKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLV 92
           QKMNLTAV + NEVM RHI+DSLA++ PI+ SY SHC SS + NLKLVDVGTG GLPGL+
Sbjct: 75  QKMNLTAVTEANEVMRRHIEDSLAMLTPIRKSYISHCSSSID-NLKLVDVGTGPGLPGLI 133

Query: 93  LAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA 152
           LAIACP WKVTLLESMNKRCVFLEHAV++T L NV+++RGRAE+LG++ SFREQ+DVAVA
Sbjct: 134 LAIACPGWKVTLLESMNKRCVFLEHAVNVTGLSNVEVLRGRAESLGQNDSFREQFDVAVA 193

Query: 153 RAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSP 212
           RAVAEMR+LAEYCLPLVRVGGLF+AAKGHDPQEEV+N+ER++QLMGAS+LQLCSVES SP
Sbjct: 194 RAVAEMRVLAEYCLPLVRVGGLFIAAKGHDPQEEVRNAERSIQLMGASVLQLCSVESHSP 253

Query: 213 FGQRTAVVCLKSRRTPKKYPRDPG 236
           +GQRTA++ +K R TP+KYPRDPG
Sbjct: 254 YGQRTAIISVKDRPTPRKYPRDPG 277

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512958|ref|XP_003525181.1| PREDICTED: ribosomal RNA small subunit methyltransferase G-like [Glycine max]

 Score =  333 bits (854), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 157/223 (70%), Positives = 192/223 (86%), Gaps = 1/223 (0%)

Query: 21  LGLFLKKRKQNLQKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLV 80
           + L+++   Q  ++MNLTAV++VNEVMERH++DSLAI+PP+ + Y SHC +SC+  L LV
Sbjct: 53  IHLYVETLLQWNKRMNLTAVREVNEVMERHVEDSLAILPPLSDCYRSHCSASCD-KLSLV 111

Query: 81  DVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD 140
           DVGTGAGLPG+VLAIA P+W VTL+ESMNKRCVFLEH V +    N++IVRGRAE+LG++
Sbjct: 112 DVGTGAGLPGVVLAIARPEWDVTLMESMNKRCVFLEHVVGVIGSSNIKIVRGRAESLGQN 171

Query: 141 VSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGAS 200
             FREQ+D+AVARAVAEMRILAEYCLPLVRVGGLF+AAKGHDP++E+K +E A+Q +GAS
Sbjct: 172 PCFREQFDIAVARAVAEMRILAEYCLPLVRVGGLFIAAKGHDPEDEIKKAESAIQKVGAS 231

Query: 201 LLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDPGTPAKVPL 243
           LLQ+CSVESQSP+GQRTAVVC K R TP KYPRDPGTPAK PL
Sbjct: 232 LLQVCSVESQSPYGQRTAVVCSKDRPTPMKYPRDPGTPAKEPL 274

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357477267|ref|XP_003608919.1| Ribosomal RNA small subunit methyltransferase G [Medicago truncatula] gi|355509974|gb|AES91116.1| Ribosomal RNA small subunit methyltransferase G [Medicago truncatula]

 Score =  323 bits (829), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 153/221 (69%), Positives = 189/221 (85%), Gaps = 1/221 (0%)

Query: 23  LFLKKRKQNLQKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDV 82
           L++    Q  ++MNLTAVK+VNEVMERHI+DSLAI+PP+ ++Y SH   S +  +KLVDV
Sbjct: 286 LYVDTLLQWNKRMNLTAVKEVNEVMERHIEDSLAILPPLSDNYMSHSSKSID-KVKLVDV 344

Query: 83  GTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS 142
           GTGAGLPG+VLAIA PDW VTL+ESMNKRCVFLEH V +    N+QIVRGRAE+LG+++ 
Sbjct: 345 GTGAGLPGVVLAIARPDWDVTLMESMNKRCVFLEHVVGVIGSSNLQIVRGRAESLGQNLC 404

Query: 143 FREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLL 202
           +RE++D+AVARAVAE R+LAEYCLPLVRVGG+F+AAKGHDP++EVK +E A++ MGASLL
Sbjct: 405 YREKFDIAVARAVAETRVLAEYCLPLVRVGGMFIAAKGHDPEDEVKKAENAIKKMGASLL 464

Query: 203 QLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDPGTPAKVPL 243
           Q+CSVESQSP+GQRTAV+CLK R TP KYPR PGTP+K PL
Sbjct: 465 QVCSVESQSPYGQRTAVICLKDRPTPMKYPRFPGTPSKEPL 505

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240256423|ref|NP_568720.4| glucose inhibited division protein B [Arabidopsis thaliana] gi|332008514|gb|AED95897.1| glucose inhibited division protein B [Arabidopsis thaliana]

 Score =  322 bits (824), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 151/223 (67%), Positives = 185/223 (82%), Gaps = 1/223 (0%)

Query: 21  LGLFLKKRKQNLQKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLV 80
           + L++    Q  QKMNLTA K+ +EVMERHI+DSLAI+PPIK  Y  H  S    ++ L+
Sbjct: 71  IHLYVDTLLQWNQKMNLTATKEADEVMERHIEDSLAILPPIKTCYNLH-SSDLFDHINLI 129

Query: 81  DVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD 140
           DVG+GAGLPGLVLAIACPDW+VTLLES+NKRCVFLEH V++T L NV IVRGRAE+ G D
Sbjct: 130 DVGSGAGLPGLVLAIACPDWRVTLLESINKRCVFLEHVVNVTGLTNVTIVRGRAESCGHD 189

Query: 141 VSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGAS 200
           V +RE++DVA+ARAVAEMR+LAEYCLPLVR+GGLFVAAKGHDP+EEV+N+E AV+L+G S
Sbjct: 190 VMYREKFDVAIARAVAEMRVLAEYCLPLVRIGGLFVAAKGHDPKEEVQNAENAVRLLGGS 249

Query: 201 LLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDPGTPAKVPL 243
           +LQ+  V+S SP+GQRT VVC K   TP+KYPR+ GTPAK+PL
Sbjct: 250 ILQISPVDSHSPYGQRTTVVCRKDHSTPQKYPREAGTPAKLPL 292

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|90568008|gb|ABD94074.1| At5g50110 [Arabidopsis thaliana]

 Score =  315 bits (806), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 147/209 (70%), Positives = 178/209 (85%), Gaps = 1/209 (0%)

Query: 35  MNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLVLA 94
           MNLTA K+ +EVMERHI+DSLAI+PPIK  Y  H  S    ++ L+DVG+GAGLPGLVLA
Sbjct: 1   MNLTATKEADEVMERHIEDSLAILPPIKTCYNLH-SSDLFDHINLIDVGSGAGLPGLVLA 59

Query: 95  IACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA 154
           IACPDW+VTLLES+NKRCVFLEH V++T L NV IVRGRAE+ G DV +RE++DVA+ARA
Sbjct: 60  IACPDWRVTLLESINKRCVFLEHVVNVTGLTNVTIVRGRAESCGHDVMYREKFDVAIARA 119

Query: 155 VAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFG 214
           VAEMR+LAEYCLPLVR+GGLFVAAKGHDP+EEV+N+E AV+L+G S+LQ+  V+S SP+G
Sbjct: 120 VAEMRVLAEYCLPLVRIGGLFVAAKGHDPKEEVQNAENAVRLLGGSILQISPVDSHSPYG 179

Query: 215 QRTAVVCLKSRRTPKKYPRDPGTPAKVPL 243
           QRT VVC K   TP+KYPR+ GTPAK+PL
Sbjct: 180 QRTTVVCRKDHSTPQKYPREAGTPAKLPL 208

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|10177222|dbj|BAB10297.1| unnamed protein product [Arabidopsis thaliana]

 Score =  309 bits (792), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 145/218 (66%), Positives = 178/218 (81%), Gaps = 1/218 (0%)

Query: 21  LGLFLKKRKQNLQKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLV 80
           + L++    Q  QKMNLTA K+ +EVMERHI+DSLAI+PPIK  Y  H  S    ++ L+
Sbjct: 71  IHLYVDTLLQWNQKMNLTATKEADEVMERHIEDSLAILPPIKTCYNLH-SSDLFDHINLI 129

Query: 81  DVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD 140
           DVG+GAGLPGLVLAIACPDW+VTLLES+NKRCVFLEH V++T L NV IVRGRAE+ G D
Sbjct: 130 DVGSGAGLPGLVLAIACPDWRVTLLESINKRCVFLEHVVNVTGLTNVTIVRGRAESCGHD 189

Query: 141 VSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGAS 200
           V +RE++DVA+ARAVAEMR+LAEYCLPLVR+GGLFVAAKGHDP+EEV+N+E AV+L+G S
Sbjct: 190 VMYREKFDVAIARAVAEMRVLAEYCLPLVRIGGLFVAAKGHDPKEEVQNAENAVRLLGGS 249

Query: 201 LLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDPGTP 238
           +LQ+  V+S SP+GQRT VVC K   TP+KYPR+   P
Sbjct: 250 ILQISPVDSHSPYGQRTTVVCRKDHSTPQKYPREAEDP 287

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297792303|ref|XP_002864036.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297309871|gb|EFH40295.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  309 bits (791), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 142/209 (67%), Positives = 179/209 (85%), Gaps = 1/209 (0%)

Query: 35  MNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLVLA 94
           MNLTA K+ +EVMERHI+DSLAI+PP+K  Y  H +   + ++ LVDVG+GAGLPGLVLA
Sbjct: 1   MNLTATKEADEVMERHIEDSLAILPPLKACYNLHSNDLFD-HINLVDVGSGAGLPGLVLA 59

Query: 95  IACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA 154
           IACPDW+VTLLES+NKRC+FLEH V++T L NV+IVRGRAE+ G DV +RE++DVA+ARA
Sbjct: 60  IACPDWRVTLLESINKRCIFLEHVVNVTGLTNVKIVRGRAESCGHDVMYREKFDVAIARA 119

Query: 155 VAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFG 214
           VAEMR+L EYCLPLVR+GGLFVAAKGHDP+EEV+N+E AV+++G S+LQ+  V+S SP+G
Sbjct: 120 VAEMRVLVEYCLPLVRIGGLFVAAKGHDPKEEVQNAENAVRMLGGSILQISPVDSHSPYG 179

Query: 215 QRTAVVCLKSRRTPKKYPRDPGTPAKVPL 243
           QRT VVC K   TP+KYPR+ GTP+K+PL
Sbjct: 180 QRTTVVCRKDHSTPQKYPREAGTPSKLPL 208

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	243
TAIR|locus:2170051	292	AT5G50110 [Arabidopsis thalian	0.864	0.719	0.706	3.3e-79
UNIPROTKB|Q81JH4	239	rsmG "Ribosomal RNA small subu	0.818	0.832	0.413	1.5e-37
TIGR_CMR|BA_5732	239	BA_5732 "glucose-inhibited div	0.818	0.832	0.413	1.5e-37
UNIPROTKB|Q3AG54	235	rsmG "Ribosomal RNA small subu	0.823	0.851	0.426	3.9e-37
TIGR_CMR|CHY_0008	235	CHY_0008 "glucose-inhibited di	0.823	0.851	0.426	3.9e-37
UNIPROTKB|Q71VW1	238	rsmG "Ribosomal RNA small subu	0.827	0.844	0.369	3.2e-33
UNIPROTKB|Q97QD4	237	rsmG "Ribosomal RNA small subu	0.818	0.839	0.375	3.8e-30
TIGR_CMR|DET_0776	235	DET_0776 "methyltransferase Gi	0.814	0.842	0.360	1.4e-25
UNIPROTKB|P94614	204	rsmG "Ribosomal RNA small subu	0.600	0.715	0.335	5.8e-18
TIGR_CMR|CBU_1925	204	CBU_1925 "glucose-inhibited di	0.600	0.715	0.335	5.8e-18

TAIR|locus:2170051 AT5G50110 [Arabidopsis thaliana (taxid:3702)]

 Score = 796 (285.3 bits), Expect = 3.3e-79, P = 3.3e-79
 Identities = 149/211 (70%), Positives = 180/211 (85%)

Query:    33 QKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLV 92
             QKMNLTA K+ +EVMERHI+DSLAI+PPIK  Y  H  S    ++ L+DVG+GAGLPGLV
Sbjct:    83 QKMNLTATKEADEVMERHIEDSLAILPPIKTCYNLH-SSDLFDHINLIDVGSGAGLPGLV 141

Query:    93 LAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA 152
             LAIACPDW+VTLLES+NKRCVFLEH V++T L NV IVRGRAE+ G DV +RE++DVA+A
Sbjct:   142 LAIACPDWRVTLLESINKRCVFLEHVVNVTGLTNVTIVRGRAESCGHDVMYREKFDVAIA 201

Query:   153 RAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSP 212
             RAVAEMR+LAEYCLPLVR+GGLFVAAKGHDP+EEV+N+E AV+L+G S+LQ+  V+S SP
Sbjct:   202 RAVAEMRVLAEYCLPLVRIGGLFVAAKGHDPKEEVQNAENAVRLLGGSILQISPVDSHSP 261

Query:   213 FGQRTAVVCLKSRRTPKKYPRDPGTPAKVPL 243
             +GQRT VVC K   TP+KYPR+ GTPAK+PL
Sbjct:   262 YGQRTTVVCRKDHSTPQKYPREAGTPAKLPL 292

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0008649 "rRNA methyltransferase activity" evidence=IEA

UNIPROTKB|Q81JH4 rsmG "Ribosomal RNA small subunit methyltransferase G" [Bacillus anthracis (taxid:1392)]

 Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
 Identities = 88/213 (41%), Positives = 125/213 (58%)

Query:    33 QKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLV 92
             +KMNLTA+ +  EV  +H  DS+            + D S      + DVG GAG P + 
Sbjct:    37 EKMNLTAITEKEEVYLKHFFDSITA--------AFYYDFS--KPFSICDVGAGAGFPSIP 86

Query:    93 LAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA 152
             L I  P  KVT+++S+ KR  FL H     +L +V     RAET GK    RE YD+ +A
Sbjct:    87 LKICFPHLKVTIVDSLQKRINFLNHLAQKLELSDVAFCHDRAETFGKKEGVREAYDIVMA 146

Query:   153 RAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSP 212
             RAVA + +L+E CLPLV+VGG F+A KG    EE++N + A++++G  L ++ +   Q P
Sbjct:   147 RAVARLSVLSELCLPLVKVGGTFIAMKGAAANEEIENGKYALEVLGGDLKEMSTF--QLP 204

Query:   213 F--GQRTAVVCLKSRRTPKKYPRDPGTPAKVPL 243
             F   +R  ++  K R+TPKKYPR PGTP K+P+
Sbjct:   205 FEESERNILLIEKKRKTPKKYPRKPGTPNKLPI 237

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|BA_5732 BA_5732 "glucose-inhibited division protein B" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
 Identities = 88/213 (41%), Positives = 125/213 (58%)

Query:    33 QKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLV 92
             +KMNLTA+ +  EV  +H  DS+            + D S      + DVG GAG P + 
Sbjct:    37 EKMNLTAITEKEEVYLKHFFDSITA--------AFYYDFS--KPFSICDVGAGAGFPSIP 86

Query:    93 LAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA 152
             L I  P  KVT+++S+ KR  FL H     +L +V     RAET GK    RE YD+ +A
Sbjct:    87 LKICFPHLKVTIVDSLQKRINFLNHLAQKLELSDVAFCHDRAETFGKKEGVREAYDIVMA 146

Query:   153 RAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSP 212
             RAVA + +L+E CLPLV+VGG F+A KG    EE++N + A++++G  L ++ +   Q P
Sbjct:   147 RAVARLSVLSELCLPLVKVGGTFIAMKGAAANEEIENGKYALEVLGGDLKEMSTF--QLP 204

Query:   213 F--GQRTAVVCLKSRRTPKKYPRDPGTPAKVPL 243
             F   +R  ++  K R+TPKKYPR PGTP K+P+
Sbjct:   205 FEESERNILLIEKKRKTPKKYPRKPGTPNKLPI 237

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q3AG54 rsmG "Ribosomal RNA small subunit methyltransferase G" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
 Identities = 90/211 (42%), Positives = 124/211 (58%)

Query:    33 QKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLV 92
             +K NLTAV   +EV+ +H  DS A++  I    T         +L  VD+GTGAG PG+ 
Sbjct:    36 EKYNLTAVTGEDEVIVKHFLDSTAVL--IYRDLT---------DLNAVDIGTGAGFPGIP 84

Query:    93 LAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA 152
             L I  P  K+ LL+S+ KRC+FLE  V    L NV ++  RAE LG+   FRE +DV  +
Sbjct:    85 LKIMVPGLKLLLLDSLKKRCLFLERVVRELNLTNVTVINERAENLGRQKPFRELFDVTFS 144

Query:   153 RAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSP 212
             RAVAE+R+L E+  PL+R+GG  +  KG    EE+K +E+A + +G  L  +        
Sbjct:   145 RAVAEVRVLLEFHAPLLRLGGETILFKGPGVDEELKKAEKAAKQLGMELKDVYYYRLPGN 204

Query:   213 FGQRTAVVCLKSRRTPKKYPRDPGTPAKVPL 243
             FG+R+ VV  K + TP+ YPR PG P K PL
Sbjct:   205 FGERSLVVYKKLQNTPENYPRRPGIPEKRPL 235

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CHY_0008 CHY_0008 "glucose-inhibited division protein B" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
 Identities = 90/211 (42%), Positives = 124/211 (58%)

Query:    33 QKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLV 92
             +K NLTAV   +EV+ +H  DS A++  I    T         +L  VD+GTGAG PG+ 
Sbjct:    36 EKYNLTAVTGEDEVIVKHFLDSTAVL--IYRDLT---------DLNAVDIGTGAGFPGIP 84

Query:    93 LAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA 152
             L I  P  K+ LL+S+ KRC+FLE  V    L NV ++  RAE LG+   FRE +DV  +
Sbjct:    85 LKIMVPGLKLLLLDSLKKRCLFLERVVRELNLTNVTVINERAENLGRQKPFRELFDVTFS 144

Query:   153 RAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSP 212
             RAVAE+R+L E+  PL+R+GG  +  KG    EE+K +E+A + +G  L  +        
Sbjct:   145 RAVAEVRVLLEFHAPLLRLGGETILFKGPGVDEELKKAEKAAKQLGMELKDVYYYRLPGN 204

Query:   213 FGQRTAVVCLKSRRTPKKYPRDPGTPAKVPL 243
             FG+R+ VV  K + TP+ YPR PG P K PL
Sbjct:   205 FGERSLVVYKKLQNTPENYPRRPGIPEKRPL 235

GO:0008150 "biological_process" evidence=ND

GO:0008168 "methyltransferase activity" evidence=ISS

UNIPROTKB|Q71VW1 rsmG "Ribosomal RNA small subunit methyltransferase G" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)]

 Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
 Identities = 78/211 (36%), Positives = 121/211 (57%)

Query:    33 QKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLV 92
             +KMNLTA+ D  EV  +H  DS++    +   +T   D+ C       DVG GAG P L 
Sbjct:    37 EKMNLTAITDEKEVYLKHFYDSISAAFYV--DFTKF-DTIC-------DVGAGAGFPSLP 86

Query:    93 LAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA 152
             + I  P  +V++++S+ KR  FL+       L +V     RAET G++ + RE+YD+  A
Sbjct:    87 IKICFPHLEVSIVDSLKKRMTFLDALAEKLGLTDVHFYHDRAETFGQNKAHREKYDLVTA 146

Query:   153 RAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSP 212
             RAVA M +L+E C+PLV+ GG F+  K    ++E++ +E+A++L G  + +  +      
Sbjct:   147 RAVARMSVLSELCMPLVKKGGSFLVMKAAQAEQELQTAEKAIKLFGGKVEEHFAFSLPVE 206

Query:   213 FGQRTAVVCLKSRRTPKKYPRDPGTPAKVPL 243
               +R   V  K++ TP KYPR PGTP K+P+
Sbjct:   207 ESERNIYVITKTKETPNKYPRKPGTPNKLPI 237

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q97QD4 rsmG "Ribosomal RNA small subunit methyltransferase G" [Streptococcus pneumoniae TIGR4 (taxid:170187)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 80/213 (37%), Positives = 116/213 (54%)

Query:    33 QKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLV 92
             +K+NLTA+ D  EV  +H  DS+A   PI            N  +KL+D+G GAG P L 
Sbjct:    37 EKINLTAITDKEEVYLKHFYDSIA---PILQGLIP------NETIKLLDIGAGAGFPSLP 87

Query:    93 LAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA 152
             + I  P+  VT+++S+NKR  FL+       L  V    GRAE   +D +FR QYD   A
Sbjct:    88 MKILYPELDVTIIDSLNKRINFLQLLAQELDLNGVHFYHGRAEDFAQDKNFRAQYDFVTA 147

Query:   153 RAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCS--VESQ 210
             RAVA M++L+E  +P ++VGG  +A K  +  EE+  ++ A+ L+ + +    S  + ++
Sbjct:   148 RAVARMQVLSELTIPYLKVGGKLLALKASNAPEELLEAKNALNLLFSKVEDNLSYALPNR 207

Query:   211 SPFGQRTAVVCLKSRRTPKKYPRDPGTPAKVPL 243
              P   R   V  K + TP KYPR  G P K PL
Sbjct:   208 DP---RYITVVEKKKETPNKYPRKAGMPNKRPL 237

GO:0005515 "protein binding" evidence=IPI

TIGR_CMR|DET_0776 DET_0776 "methyltransferase GidB" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
 Identities = 76/211 (36%), Positives = 111/211 (52%)

Query:    34 KMNLTAVKDVNEVMERHIDDSLAI-IPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLV 92
             ++NLTA+    ++  +H  DS ++ +  IK       D       KL+DVG+GAG PGL 
Sbjct:    36 RVNLTAITGYEDIQLKHFLDSASLALAGIKG------DE------KLLDVGSGAGFPGLP 83

Query:    93 LAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA 152
             L I  P  K+ LLE+  K+  FL    +   L  V+I+  RAE   ++  +R++Y +  +
Sbjct:    84 LKIIFPGMKLGLLEATQKKARFLSEITAKLGLTGVEIISQRAEDAAQNPLYRQKYTLVTS 143

Query:   153 RAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSP 212
             RAVA+M  LAE  LP   VGG  VA K  D +EE+  +  A++ MG  + ++  V+    
Sbjct:   144 RAVADMATLAELTLPFCAVGGRVVAPKKGDIEEEMDRAASAIKKMGGRVSEIIKVDLPGL 203

Query:   213 FGQRTAVVCLKSRRTPKKYPRDPGTPAKVPL 243
                R  VV  K   T  +YPR  G PAK PL
Sbjct:   204 QDGRKLVVLEKISNTLSQYPRRAGMPAKNPL 234

GO:0008152 "metabolic process" evidence=ISS

GO:0008168 "methyltransferase activity" evidence=ISS

UNIPROTKB|P94614 rsmG "Ribosomal RNA small subunit methyltransferase G" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 55/164 (33%), Positives = 90/164 (54%)

Query:    28 RKQNLQKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAG 87
             +K N Q  NLTA+ ++  ++  H+ DSL+I+P +K               K++DVG+GAG
Sbjct:    32 QKWN-QAYNLTAITEIKSMITHHLLDSLSILPYLKGD-------------KILDVGSGAG 77

Query:    88 LPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQY 147
              PG+ LA ACP+ K TL++S  K+  FL  A S  ++ NV I++ R  +      F    
Sbjct:    78 FPGIPLAFACPEKKFTLIDSKAKKTAFLLQAASRFKITNVTIIQERVGSYQPGFYF---- 133

Query:   148 DVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSE 191
             D    RA+  +R + E    L+R GG ++  KG  P++E++ ++
Sbjct:   134 DTITCRALGSVREIMEQTNHLLRSGGQWLIMKGAYPEKELRGTD 177

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CBU_1925 CBU_1925 "glucose-inhibited division protein B" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 55/164 (33%), Positives = 90/164 (54%)

Query:    28 RKQNLQKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAG 87
             +K N Q  NLTA+ ++  ++  H+ DSL+I+P +K               K++DVG+GAG
Sbjct:    32 QKWN-QAYNLTAITEIKSMITHHLLDSLSILPYLKGD-------------KILDVGSGAG 77

Query:    88 LPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQY 147
              PG+ LA ACP+ K TL++S  K+  FL  A S  ++ NV I++ R  +      F    
Sbjct:    78 FPGIPLAFACPEKKFTLIDSKAKKTAFLLQAASRFKITNVTIIQERVGSYQPGFYF---- 133

Query:   148 DVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSE 191
             D    RA+  +R + E    L+R GG ++  KG  P++E++ ++
Sbjct:   134 DTITCRALGSVREIMEQTNHLLRSGGQWLIMKGAYPEKELRGTD 177

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6G5W6	RSMG_STAAS	2, ., 1, ., 1, ., -	0.4265	0.8230	0.8368	yes	no
Q81JH4	RSMG_BACAN	2, ., 1, ., 1, ., -	0.4084	0.8189	0.8326	yes	no
Q2YZC0	RSMG_STAAB	2, ., 1, ., 1, ., -	0.4265	0.8230	0.8368	yes	no
Q67J35	RSMG_SYMTH	2, ., 1, ., 1, ., -	0.4208	0.8436	0.8333	yes	no
B0K5N2	RSMG_THEPX	2, ., 1, ., 1, ., -	0.3609	0.8930	0.9041	yes	no
Q8EKU4	RSMG_OCEIH	2, ., 1, ., 1, ., -	0.3744	0.8271	0.8445	yes	no
Q8NUF9	RSMG_STAAW	2, ., 1, ., 1, ., -	0.4265	0.8230	0.8368	yes	no
B7JIK9	RSMG_BACC0	2, ., 1, ., 1, ., -	0.4084	0.8189	0.8326	yes	no
B7H7A0	RSMG_BACC4	2, ., 1, ., 1, ., -	0.4084	0.8189	0.8326	yes	no
Q5HS34	RSMG_STAEQ	2, ., 1, ., 1, ., -	0.4075	0.8230	0.8368	yes	no
A0PX79	RSMG_CLONN	2, ., 1, ., 1, ., -	0.3761	0.8230	0.8230	yes	no
Q814F8	RSMG_BACCR	2, ., 1, ., 1, ., -	0.4084	0.8189	0.8326	yes	no
Q8CMN7	RSMG_STAES	2, ., 1, ., 1, ., -	0.4123	0.8230	0.8368	yes	no
P64240	RSMG_STAAN	2, ., 1, ., 1, ., -	0.4170	0.8230	0.8368	yes	no
C1ER75	RSMG_BACC3	2, ., 1, ., 1, ., -	0.4084	0.8189	0.8326	yes	no
A8YYR9	RSMG_STAAT	2, ., 1, ., 1, ., -	0.4265	0.8230	0.8368	yes	no
Q1WRS8	RSMG_LACS1	2, ., 1, ., 1, ., -	0.4181	0.8724	0.8796	yes	no
Q2FUQ4	RSMG_STAA8	2, ., 1, ., 1, ., -	0.4265	0.8230	0.8368	yes	no
B9IT40	RSMG_BACCQ	2, ., 1, ., 1, ., -	0.4084	0.8189	0.8326	yes	no
A6M3M3	RSMG_CLOB8	2, ., 1, ., 1, ., -	0.3772	0.8641	0.8786	yes	no
Q49UI6	RSMG_STAS1	2, ., 1, ., 1, ., -	0.4075	0.8230	0.8368	yes	no
Q2RFJ0	RSMG_MOOTA	2, ., 1, ., 1, ., -	0.3886	0.8436	0.8541	yes	no
B8G6Y3	RSMG_CHLAD	2, ., 1, ., 1, ., -	0.3867	0.8065	0.8235	yes	no
A8MKR7	RSMG_ALKOO	2, ., 1, ., 1, ., -	0.4319	0.8189	0.8326	yes	no
A3DHY6	RSMG_CLOTH	2, ., 1, ., 1, ., -	0.4460	0.8106	0.8140	yes	no
Q72WU5	RSMG_BACC1	2, ., 1, ., 1, ., -	0.4084	0.8189	0.8326	yes	no
Q4L2Z4	RSMG_STAHJ	2, ., 1, ., 1, ., -	0.4075	0.8230	0.8333	yes	no
A0RLR0	RSMG_BACAH	2, ., 1, ., 1, ., -	0.4084	0.8189	0.8326	yes	no
B7HZG8	RSMG_BACC7	2, ., 1, ., 1, ., -	0.4084	0.8189	0.8326	yes	no
A6QKK0	RSMG_STAAE	2, ., 1, ., 1, ., -	0.4265	0.8230	0.8368	yes	no
Q97CW4	RSMG_CLOAB	2, ., 1, ., 1, ., -	0.4066	0.8189	0.8326	yes	no
A9VTL8	RSMG_BACWK	2, ., 1, ., 1, ., -	0.3866	0.8683	0.8828	yes	no
C3LGT9	RSMG_BACAC	2, ., 1, ., 1, ., -	0.4084	0.8189	0.8326	yes	no
Q630C0	RSMG_BACCZ	2, ., 1, ., 1, ., -	0.4084	0.8189	0.8326	yes	no
Q6HAF4	RSMG_BACHK	2, ., 1, ., 1, ., -	0.4084	0.8189	0.8326	yes	no
A6U593	RSMG_STAA2	2, ., 1, ., 1, ., -	0.4170	0.8230	0.8368	yes	no
A5IWD5	RSMG_STAA9	2, ., 1, ., 1, ., -	0.4170	0.8230	0.8368	yes	no
C3P3F3	RSMG_BACAA	2, ., 1, ., 1, ., -	0.4084	0.8189	0.8326	yes	no
A7X7A5	RSMG_STAA1	2, ., 1, ., 1, ., -	0.4170	0.8230	0.8368	yes	no
P64239	RSMG_STAAM	2, ., 1, ., 1, ., -	0.4170	0.8230	0.8368	yes	no
C4L001	RSMG_EXISA	2, ., 1, ., 1, ., -	0.4312	0.8271	0.8445	yes	no
Q5WAG5	RSMG_BACSK	2, ., 1, ., 1, ., -	0.4075	0.8230	0.8438	yes	no
Q6GD94	RSMG_STAAR	2, ., 1, ., 1, ., -	0.4218	0.8230	0.8368	yes	no
B1MX30	RSMG_LEUCK	2, ., 1, ., 1, ., -	0.4088	0.8641	0.8786	yes	no
B1YGA6	RSMG_EXIS2	2, ., 1, ., 1, ., -	0.4265	0.8271	0.8445	yes	no
Q5HCI5	RSMG_STAAC	2, ., 1, ., 1, ., -	0.4265	0.8230	0.8368	yes	no
A6TXE3	RSMG_ALKMQ	2, ., 1, ., 1, ., -	0.4366	0.8189	0.8326	yes	no
B7IST2	RSMG_BACC2	2, ., 1, ., 1, ., -	0.4084	0.8189	0.8326	yes	no
A4J9R9	RSMG_DESRM	2, ., 1, ., 1, ., -	0.3896	0.8189	0.8291	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.1.1.170	0.824
3rd Layer	2.1.1	0.766

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	243
PRK00107	187	PRK00107, gidB, 16S rRNA methyltransferase GidB; R	1e-67
COG0357	215	COG0357, GidB, Predicted S-adenosylmethionine-depe	5e-60
TIGR00138	181	TIGR00138, gidB, 16S rRNA (guanine(527)-N(7))-meth	5e-56
pfam02527	184	pfam02527, GidB, rRNA small subunit methyltransfer	6e-55
pfam13847	151	pfam13847, Methyltransf_31, Methyltransferase doma	4e-05
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	2e-04
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	4e-04

>gnl|CDD|234637 PRK00107, gidB, 16S rRNA methyltransferase GidB; Reviewed

 Score =  206 bits (527), Expect = 1e-67
 Identities = 71/162 (43%), Positives = 101/162 (62%), Gaps = 16/162 (9%)

Query: 33  QKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLV 92
           +K NLTA++D  E+ ERHI DSLAI P +                +++DVG+GAG PG+ 
Sbjct: 15  KKYNLTAIRDPEELWERHILDSLAIAPYLPG------------GERVLDVGSGAGFPGIP 62

Query: 93  LAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA 152
           LAIA P+ KVTL++S+ K+  FL    +   L NV +V GRAE  G++    E++DV  +
Sbjct: 63  LAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQE----EKFDVVTS 118

Query: 153 RAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAV 194
           RAVA +  L E CLPL++ GG F+A KG DP+EE+    +A+
Sbjct: 119 RAVASLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKAL 160

Length = 187

>gnl|CDD|223434 COG0357, GidB, Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

 Score =  188 bits (479), Expect = 5e-60
 Identities = 76/194 (39%), Positives = 117/194 (60%), Gaps = 14/194 (7%)

Query: 33  QKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLV 92
           +  NLTA++D  E+ +RHI DSL ++P +                +++D+G+GAG PG+ 
Sbjct: 36  KAYNLTAIRDPEELWQRHILDSLVLLPYLDGK-----------AKRVLDIGSGAGFPGIP 84

Query: 93  LAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA 152
           LAIA PD KVTLLES+ K+  FL        L NV+IV GRAE  G++   ++QYDV  +
Sbjct: 85  LAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQE---KKQYDVVTS 141

Query: 153 RAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSP 212
           RAVA + +L E CLPL++VGG F+A KG   ++E+  +E+A+  +G  + ++ S+     
Sbjct: 142 RAVASLNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLGGQVEKVFSLTVPEL 201

Query: 213 FGQRTAVVCLKSRR 226
            G+R  V+  K + 
Sbjct: 202 DGERHLVIIRKRKI 215

Length = 215

>gnl|CDD|211555 TIGR00138, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase GidB

 Score =  176 bits (449), Expect = 5e-56
 Identities = 66/172 (38%), Positives = 104/172 (60%), Gaps = 17/172 (9%)

Query: 33  QKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLV 92
           ++ NLT++K   E+ ERHI DSLA++  +                +++D+G+GAG PG+ 
Sbjct: 13  KRFNLTSIKTPEEIWERHILDSLALLEYLDG-------------KRVIDIGSGAGFPGIP 59

Query: 93  LAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA 152
           LAIA P+ K+TLLES +K+  FL    +   L NV+IV GRAE    D    EQ+D+  +
Sbjct: 60  LAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAE----DFQHEEQFDIITS 115

Query: 153 RAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQL 204
           RA+A + +L E  L L++VGG F+A KG    +E++ ++R  Q++G   L++
Sbjct: 116 RALASLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVEPLEV 167

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA [Protein synthesis, tRNA and rRNA base modification]. Length = 181

>gnl|CDD|217086 pfam02527, GidB, rRNA small subunit methyltransferase G

 Score =  173 bits (442), Expect = 6e-55
 Identities = 71/180 (39%), Positives = 106/180 (58%), Gaps = 15/180 (8%)

Query: 33  QKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLV 92
           ++ NLT++ + NE++ERH+ DSL ++  + N             +K+ DVG+GAG PG+ 
Sbjct: 17  KRYNLTSITEPNELLERHLLDSLVVLEYLDNI-----------RIKVADVGSGAGFPGIP 65

Query: 93  LAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA 152
           LAIA PD K+TLLES+ K+  FLE       L NV IV  RAE         EQYDV  +
Sbjct: 66  LAIAFPDKKLTLLESLLKKINFLEELKKELNLENVTIVHARAEEYQH----EEQYDVITS 121

Query: 153 RAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSP 212
           RAVA +  L E+ LPL++ GG F+A KG   ++E++  ++A Q +G  +L + S+ +   
Sbjct: 122 RAVASLNELTEWALPLLKPGGYFLAYKGKQAEDEIEELDKACQKLGVEVLFVPSLGAGDR 181

This is a family of bacterial glucose inhibited division proteins these are probably involved in the regulation of cell devision. GidB has been shown to be a methyltransferase G specific to the rRNA small subunit. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. GidB specifically methylates the N7 position of a guanosine in 16S rRNA. Length = 184

>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain

 Score = 42.4 bits (100), Expect = 4e-05
 Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 7/86 (8%)

Query: 74  NSNLKLVDVGTGAGLPGLVLA-IACPDWKVTLLESMNKRCVFLEHAVSLTQLL---NVQI 129
            S +K++D+G G G    +LA    P  +V  ++   +    +E A    + L   NV+ 
Sbjct: 2   KSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEA---IEKAKENAKKLGYENVEF 58

Query: 130 VRGRAETLGKDVSFREQYDVAVARAV 155
           ++G  E L +       +DV ++  V
Sbjct: 59  IQGDIEELPQLQLEDNSFDVVISNEV 84

This family appears to be have methyltransferase activity. Length = 151

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 16/108 (14%)

Query: 78  KLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL---NVQIVRGRA 134
           +++D+G G G   L LA   P  +VT ++ ++   V LE A      L   NV++++G A
Sbjct: 1   RVLDLGCGTGALALALASG-PGARVTGVD-ISP--VALELARKAAAALLADNVEVLKGDA 56

Query: 135 ETLGKDVSFREQYDVAVARAVAE------MRILAEYCLPLVRVGGLFV 176
           E L  +    E +DV ++            R L E    L++ GG+ V
Sbjct: 57  EELPPEAD--ESFDVIISDPPLHHLVEDLARFLEE-ARRLLKPGGVLV 101

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 38.4 bits (90), Expect = 4e-04
 Identities = 20/104 (19%), Positives = 37/104 (35%), Gaps = 4/104 (3%)

Query: 75  SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRA 134
              +++D+G G G   + LA   P  +VT ++   +          L     +  V+G A
Sbjct: 1   PGARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGPRITFVQGDA 60

Query: 135 ETLGKDVSFREQYDVAVARAVAEMRI-LAEYCLPLVRVGGLFVA 177
                 +   E +D           + L +    L++ GG  V 
Sbjct: 61  P---DALDLLEGFDAVFIGGGGGDLLELLDALASLLKPGGRLVL 101

Protein in this family function as methyltransferases. Length = 104

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	243
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	100.0
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	99.97
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	99.97
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.97
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.89
COG4123	248	Predicted O-methyltransferase [General function pr	99.87
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.85
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.83
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.82
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.82
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.8
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.8
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.78
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.78
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.77
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.76
COG2890	280	HemK Methylase of polypeptide chain release factor	99.75
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.75
PLN02244	340	tocopherol O-methyltransferase	99.75
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.74
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.74
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.73
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.73
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.73
PRK04266	226	fibrillarin; Provisional	99.73
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.73
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.73
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.71
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.71
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.71
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.71
PRK11207	197	tellurite resistance protein TehB; Provisional	99.71
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.7
PRK07402	196	precorrin-6B methylase; Provisional	99.7
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.7
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.7
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.69
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.69
PLN02490	340	MPBQ/MSBQ methyltransferase	99.69
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.69
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.69
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.69
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.69
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.68
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.68
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.68
PLN02336	475	phosphoethanolamine N-methyltransferase	99.67
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.66
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.66
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.66
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.66
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.65
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.65
PRK14967	223	putative methyltransferase; Provisional	99.65
PRK12335	287	tellurite resistance protein TehB; Provisional	99.64
PLN03075	296	nicotianamine synthase; Provisional	99.64
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.64
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.64
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.64
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.63
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.63
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.63
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.63
PRK14968	188	putative methyltransferase; Provisional	99.63
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.62
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.62
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.62
PRK05785	226	hypothetical protein; Provisional	99.61
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.61
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.61
PRK08317	241	hypothetical protein; Provisional	99.61
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.6
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.6
PLN02672	1082	methionine S-methyltransferase	99.6
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.59
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.59
KOG2904	328	consensus Predicted methyltransferase [General fun	99.58
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.57
PTZ00146	293	fibrillarin; Provisional	99.56
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.56
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.56
KOG1271	227	consensus Methyltransferases [General function pre	99.55
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.55
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.54
PRK06922	677	hypothetical protein; Provisional	99.54
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.53
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.53
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.53
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.52
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	99.52
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.52
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.52
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.51
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.51
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.51
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.51
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.51
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.51
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.5
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	99.5
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.5
KOG4300	252	consensus Predicted methyltransferase [General fun	99.5
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.5
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	99.5
PRK00811	283	spermidine synthase; Provisional	99.49
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.49
TIGR00438	188	rrmJ cell division protein FtsJ.	99.49
PRK04457	262	spermidine synthase; Provisional	99.49
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.49
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.48
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.48
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.48
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.48
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.48
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.47
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.47
PHA03411	279	putative methyltransferase; Provisional	99.46
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.45
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.44
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.44
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.44
COG4122	219	Predicted O-methyltransferase [General function pr	99.43
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.43
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	99.42
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.41
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	99.4
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.4
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	99.39
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.39
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.38
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	99.38
PLN02476	278	O-methyltransferase	99.38
PLN02336	475	phosphoethanolamine N-methyltransferase	99.37
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	99.35
PRK06202	232	hypothetical protein; Provisional	99.33
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	99.33
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	99.32
PRK01581	374	speE spermidine synthase; Validated	99.32
PLN02366	308	spermidine synthase	99.32
PRK03612	521	spermidine synthase; Provisional	99.32
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	99.31
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	99.29
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	99.29
PHA03412	241	putative methyltransferase; Provisional	99.29
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.28
TIGR03438	301	probable methyltransferase. This model represents	99.27
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	99.27
PLN02589	247	caffeoyl-CoA O-methyltransferase	99.26
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	99.26
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	99.25
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	99.23
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	99.22
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	99.21
COG4976	287	Predicted methyltransferase (contains TPR repeat)	99.21
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.2
PRK13256	226	thiopurine S-methyltransferase; Reviewed	99.2
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	99.18
COG1041	347	Predicted DNA modification methylase [DNA replicat	99.18
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	99.18
KOG2899	288	consensus Predicted methyltransferase [General fun	99.18
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	99.18
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	99.17
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	99.17
KOG2361	264	consensus Predicted methyltransferase [General fun	99.17
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	99.17
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	99.16
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	99.14
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	99.13
COG2520	341	Predicted methyltransferase [General function pred	99.13
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	99.11
KOG3010	261	consensus Methyltransferase [General function pred	99.08
COG0742	187	N6-adenine-specific methylase [DNA replication, re	99.07
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	99.05
PLN02823	336	spermine synthase	99.05
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	99.04
COG2265	432	TrmA SAM-dependent methyltransferases related to t	99.03
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	99.02
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	99.02
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	99.01
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	99.0
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	99.0
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.99
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	98.99
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	98.98
PLN02232	160	ubiquinone biosynthesis methyltransferase	98.96
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.94
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	98.94
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.93
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	98.91
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	98.9
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	98.89
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.89
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.89
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	98.85
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	98.85
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.84
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	98.83
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	98.8
COG2521	287	Predicted archaeal methyltransferase [General func	98.75
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	98.75
PRK04148	134	hypothetical protein; Provisional	98.74
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	98.74
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	98.74
PRK00536	262	speE spermidine synthase; Provisional	98.71
KOG3201	201	consensus Uncharacterized conserved protein [Funct	98.71
COG4076	252	Predicted RNA methylase [General function predicti	98.7
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	98.68
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.64
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	98.63
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.62
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	98.54
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	98.53
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	98.53
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.5
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	98.5
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	98.49
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	98.49
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	98.49
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	98.47
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	98.44
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	98.43
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	98.43
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	98.41
COG3897	218	Predicted methyltransferase [General function pred	98.38
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	98.38
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	98.38
PF13679	141	Methyltransf_32: Methyltransferase domain	98.37
COG2384	226	Predicted SAM-dependent methyltransferase [General	98.36
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	98.34
COG4262	508	Predicted spermidine synthase with an N-terminal m	98.33
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	98.33
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	98.33
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	98.28
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	98.27
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	98.25
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	98.22
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	98.21
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	98.21
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	98.2
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	98.17
KOG2940	325	consensus Predicted methyltransferase [General fun	98.16
KOG3115	249	consensus Methyltransferase-like protein [General	98.14
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	98.12
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	98.1
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	98.09
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	98.07
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	98.04
KOG2730	263	consensus Methylase [General function prediction o	98.0
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	98.0
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	97.99
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	97.99
PRK10742	250	putative methyltransferase; Provisional	97.98
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	97.98
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	97.95
KOG1331	293	consensus Predicted methyltransferase [General fun	97.89
COG1568	354	Predicted methyltransferases [General function pre	97.82
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	97.79
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	97.69
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	97.66
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	97.54
KOG1501	636	consensus Arginine N-methyltransferase [General fu	97.53
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	97.47
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	97.44
COG4798	238	Predicted methyltransferase [General function pred	97.42
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	97.4
PHA01634	156	hypothetical protein	97.4
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	97.38
COG3129	292	Predicted SAM-dependent methyltransferase [General	97.38
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	97.37
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	97.33
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	97.29
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	97.27
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	97.25
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	97.13
KOG1253	525	consensus tRNA methyltransferase [Translation, rib	97.09
KOG4058	199	consensus Uncharacterized conserved protein [Funct	97.09
COG0286	489	HsdM Type I restriction-modification system methyl	97.04
KOG2352	482	consensus Predicted spermine/spermidine synthase [	96.92
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	96.87
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	96.68
KOG1099	294	consensus SAM-dependent methyltransferase/cell div	96.64
KOG1227	351	consensus Putative methyltransferase [General func	96.61
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	96.45
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	96.45
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	96.4
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	96.35
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	96.34
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	96.33
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	96.32
KOG2671	421	consensus Putative RNA methylase [Replication, rec	96.23
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	96.16
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	96.15
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	96.05
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	95.89
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	95.83
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	95.78
PF05430	124	Methyltransf_30: S-adenosyl-L-methionine-dependent	95.76
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	95.74
KOG2078	495	consensus tRNA modification enzyme [RNA processing	95.73
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	95.59
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	95.54
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	95.48
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	95.34
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	95.33
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	95.3
PRK11524	284	putative methyltransferase; Provisional	95.2
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	95.16
PF05711	248	TylF: Macrocin-O-methyltransferase (TylF); InterPr	95.04
PRK13699	227	putative methylase; Provisional	94.85
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	94.8
KOG3924	419	consensus Putative protein methyltransferase invol	94.72
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	94.55
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	94.13
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	94.12
PTZ00357	1072	methyltransferase; Provisional	94.03
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	93.77
KOG2920	282	consensus Predicted methyltransferase [General fun	93.68
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	93.66
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	93.61
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	93.59
KOG2352	482	consensus Predicted spermine/spermidine synthase [	93.58
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	93.49
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	93.35
PRK10458	467	DNA cytosine methylase; Provisional	93.12
PRK13699	227	putative methylase; Provisional	93.11
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	93.1
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	92.96
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	92.87
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	92.69
PLN02740	381	Alcohol dehydrogenase-like	92.65
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	92.58
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	92.46
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	92.45
PF05050	167	Methyltransf_21: Methyltransferase FkbM domain; In	92.44
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	92.43
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	92.4
KOG2912	419	consensus Predicted DNA methylase [Function unknow	92.34
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	92.26
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	92.13
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	91.63
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	91.55
COG2933	358	Predicted SAM-dependent methyltransferase [General	91.49
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	91.49
PLN02827	378	Alcohol dehydrogenase-like	91.37
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	91.34
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	91.26
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	91.17
COG4301	321	Uncharacterized conserved protein [Function unknow	91.1
COG1565	370	Uncharacterized conserved protein [Function unknow	91.05
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	91.01
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	90.94
KOG2539	491	consensus Mitochondrial/chloroplast ribosome small	90.88
PRK11524	284	putative methyltransferase; Provisional	90.74
PRK07806	248	short chain dehydrogenase; Provisional	90.66
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	90.46
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	90.4
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	90.35
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	90.35
KOG2360	413	consensus Proliferation-associated nucleolar prote	90.27
PLN02586	360	probable cinnamyl alcohol dehydrogenase	90.26
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	90.13
COG2961	279	ComJ Protein involved in catabolism of external DN	89.73
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	89.69
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	89.67
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	89.66
COG4627	185	Uncharacterized protein conserved in bacteria [Fun	89.66
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	89.46
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	89.38
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	89.32
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	89.19
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	89.15
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	89.11
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	89.08
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	89.06
TIGR01761	343	thiaz-red thiazolinyl imide reductase. This reduct	88.95
COG4121	252	Uncharacterized conserved protein [Function unknow	88.88
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	88.7
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	88.55
COG1255	129	Uncharacterized protein conserved in archaea [Func	88.51
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	88.34
PLN02494	477	adenosylhomocysteinase	88.28
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	88.22
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	88.12
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	88.1
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	87.99
PF04378	245	RsmJ: Ribosomal RNA small subunit methyltransferas	87.97
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	87.97
PLN03209	576	translocon at the inner envelope of chloroplast su	87.86
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	87.83
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	87.77
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	87.76
cd08265	384	Zn_ADH3 Alcohol dehydrogenases of the MDR family.	87.75
PF11312	315	DUF3115: Protein of unknown function (DUF3115); In	87.72
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	87.31
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	87.26
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	86.95
PLN02178	375	cinnamyl-alcohol dehydrogenase	86.89
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	86.58
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	86.5
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	86.47
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	86.31
PRK06940	275	short chain dehydrogenase; Provisional	86.29
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	86.26
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	86.25
cd05281	341	TDH Threonine dehydrogenase. L-threonine dehydroge	86.14
PRK07102	243	short chain dehydrogenase; Provisional	86.07
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	86.04
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	85.96
PRK07904	253	short chain dehydrogenase; Provisional	85.93
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	85.89
PRK03659	601	glutathione-regulated potassium-efflux system prot	85.79
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	85.46
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	85.37
PLN02514	357	cinnamyl-alcohol dehydrogenase	85.21
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	85.18
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	84.96
PRK07326	237	short chain dehydrogenase; Provisional	84.82
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	84.75
cd08263	367	Zn_ADH10 Alcohol dehydrogenases of the MDR family.	84.66
PRK08324	681	short chain dehydrogenase; Validated	84.62
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	84.51
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	84.45
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	84.37
PRK10669	558	putative cation:proton antiport protein; Provision	84.24
PRK07454	241	short chain dehydrogenase; Provisional	84.06
PRK09291	257	short chain dehydrogenase; Provisional	83.64
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	83.58
cd08279	363	Zn_ADH_class_III Class III alcohol dehydrogenase.	83.53
PF03686	127	UPF0146: Uncharacterised protein family (UPF0146);	83.4
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	83.04
cd08267	319	MDR1 Medium chain dehydrogenases/reductase (MDR)/z	82.98
cd08241	323	QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t	82.92
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	82.87
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	82.85
PRK08703	239	short chain dehydrogenase; Provisional	82.76
KOG1098	780	consensus Putative SAM-dependent rRNA methyltransf	82.74
TIGR00497	501	hsdM type I restriction system adenine methylase (	82.74
KOG2811	420	consensus Uncharacterized conserved protein [Funct	82.66
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	82.66
PRK05396	341	tdh L-threonine 3-dehydrogenase; Validated	82.53
PRK06124	256	gluconate 5-dehydrogenase; Provisional	82.45
PRK08339	263	short chain dehydrogenase; Provisional	82.41
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	82.15
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	81.94
PRK06949	258	short chain dehydrogenase; Provisional	81.85
cd05284	340	arabinose_DH_like D-arabinose dehydrogenase. This	81.76
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	81.63
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	81.42
PRK07523	255	gluconate 5-dehydrogenase; Provisional	81.42
PRK03562	621	glutathione-regulated potassium-efflux system prot	81.4
cd05564	96	PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lic	81.38
COG3510	237	CmcI Cephalosporin hydroxylase [Defense mechanisms	81.1
PRK08213	259	gluconate 5-dehydrogenase; Provisional	81.09
PTZ00075	476	Adenosylhomocysteinase; Provisional	81.08
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	81.02
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	80.97
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	80.87
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	80.87
PRK06128	300	oxidoreductase; Provisional	80.85
PRK09422	338	ethanol-active dehydrogenase/acetaldehyde-active r	80.79
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	80.69
PRK07814	263	short chain dehydrogenase; Provisional	80.33
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	80.31

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=100.00  E-value=1.2e-31  Score=217.17  Aligned_cols=186  Identities=41%  Similarity=0.656  Sum_probs=168.4

Q ss_pred             HHHHHHHHHHHHhccCCccccCChHHHHHHhHhhhcccCCCcccccCccCCCCCCCCCeEEEEcCCCChHHHHHHHHCCC
Q 026122           20 YLGLFLKKRKQNLQKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLVLAIACPD   99 (243)
Q Consensus        20 ~l~~~~~~~~~~n~~~n~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~   99 (243)
                      .+..|...+.+||+.+|+++.+++++.|.+|++|++.+.++++            ++.+|||+|||+|..++.+++..++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~l~~~l~------------~g~~VLDiGcGtG~~al~la~~~~~   69 (187)
T PRK00107          2 QLEAYVELLVKWNKKYNLTAIRDPEELWERHILDSLAIAPYLP------------GGERVLDVGSGAGFPGIPLAIARPE   69 (187)
T ss_pred             hHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHhhcC------------CCCeEEEEcCCCCHHHHHHHHHCCC
Confidence            5789999999999999999999999999999999988776554            3789999999999999999988888


Q ss_pred             CEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122          100 WKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       100 ~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      ++|+++|+|+++++.++++++.+++++++++++|+.++..    .++||+|++++..++..+++.+.+.|+|||.+++..
T Consensus        70 ~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~----~~~fDlV~~~~~~~~~~~l~~~~~~LkpGG~lv~~~  145 (187)
T PRK00107         70 LKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ----EEKFDVVTSRAVASLSDLVELCLPLLKPGGRFLALK  145 (187)
T ss_pred             CeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC----CCCccEEEEccccCHHHHHHHHHHhcCCCeEEEEEe
Confidence            9999999999999999999999999889999999998754    268999999998899999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHhCCeeeEEEEEecCCCCCceEEEEEEee
Q 026122          180 GHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKS  224 (243)
Q Consensus       180 ~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~v~~~k~  224 (243)
                      +.....++.++..   ..|+.+.....+..++.++++|+++++|+
T Consensus       146 ~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (187)
T PRK00107        146 GRDPEEEIAELPK---ALGGKVEEVIELTLPGLDGERHLVIIRKK  187 (187)
T ss_pred             CCChHHHHHHHHH---hcCceEeeeEEEecCCCCCcEEEEEEecC
Confidence            8877776655544   67999999999999999999999999984

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=99.97  E-value=3.4e-30  Score=210.68  Aligned_cols=203  Identities=39%  Similarity=0.617  Sum_probs=185.0

Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHhccCCccccCChHHHHHHhHhhhcccCCCcccccCccCCCCCCCCCeEEEEcCCCC
Q 026122            8 GYPFSVFMFMFFYLGLFLKKRKQNLQKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAG   87 (243)
Q Consensus         8 ~~~~~~~~~~~~~l~~~~~~~~~~n~~~n~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~VLDiGcG~G   87 (243)
                      +.-.++.....+++..|.+.+.+||+.+|+|++++.+++|.+|++||+.+.+..+.          . +.+++|||+|.|
T Consensus        11 ~~~~~~~~~~~~~l~~Y~~lL~~wN~~~NLt~~~~~~e~~~rHilDSl~~~~~~~~----------~-~~~~~DIGSGaG   79 (215)
T COG0357          11 GLGLSVTEEQLEKLEAYVELLLKWNKAYNLTAIRDPEELWQRHILDSLVLLPYLDG----------K-AKRVLDIGSGAG   79 (215)
T ss_pred             hccCCccHHHHHHHHHHHHHHHHhhHhcCCCCCCCHHHHHHHHHHHHhhhhhcccc----------c-CCEEEEeCCCCC
Confidence            34456778899999999999999999999999999999999999999998876651          0 479999999999


Q ss_pred             hHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCC-ceEEEEcCcccHHHHHHHHc
Q 026122           88 LPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQ-YDVAVARAVAEMRILAEYCL  166 (243)
Q Consensus        88 ~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~-fD~I~~~~~~~~~~~l~~~~  166 (243)
                      .+|+.+|..+|+.+||.+|...+.+.+.++..+.++++|+++++++++++...    .. ||+|+|++++++..+.+.+.
T Consensus        80 fPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~----~~~~D~vtsRAva~L~~l~e~~~  155 (215)
T COG0357          80 FPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQE----KKQYDVVTSRAVASLNVLLELCL  155 (215)
T ss_pred             CchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccc----cccCcEEEeehccchHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999998753    23 99999999999999999999


Q ss_pred             cCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEEEecCCCCCceEEEEEEeeC
Q 026122          167 PLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSR  225 (243)
Q Consensus       167 ~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~v~~~k~~  225 (243)
                      .++|+||.++++.+....++..+...+....|+....+..+..+..+++|+++++++.+
T Consensus       156 pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~~~~~~~~~~p~~~~~r~l~ii~~~k  214 (215)
T COG0357         156 PLLKVGGGFLAYKGLAGKDELPEAEKAILPLGGQVEKVFSLTVPELDGERHLVIIRKRK  214 (215)
T ss_pred             HhcccCCcchhhhHHhhhhhHHHHHHHHHhhcCcEEEEEEeecCCCCCceEEEEEeccC
Confidence            99999999988887777788888888889999999999999999888899999998864

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=99.97  E-value=1.6e-29  Score=203.57  Aligned_cols=183  Identities=40%  Similarity=0.628  Sum_probs=157.8

Q ss_pred             HHHHHHHHHHHHHHhccCCccccCChHHHHHHhHhhhcccCCCcccccCccCCCCCCCCCeEEEEcCCCChHHHHHHHHC
Q 026122           18 FFYLGLFLKKRKQNLQKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLVLAIAC   97 (243)
Q Consensus        18 ~~~l~~~~~~~~~~n~~~n~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~VLDiGcG~G~~~~~la~~~   97 (243)
                      .+++..|.+++.+||+.+|+|+.++.+++|.+|++||+.+.+.++..           +.+++|||+|.|.+|+.+|..+
T Consensus         2 ~~~l~~y~~lL~~~N~~~NLt~~~~~~~~~~~Hi~DSL~~~~~~~~~-----------~~~~lDiGSGaGfPGipLaI~~   70 (184)
T PF02527_consen    2 IEKLEQYLELLLEWNKKINLTSIRDPEEIWERHILDSLALLPFLPDF-----------GKKVLDIGSGAGFPGIPLAIAR   70 (184)
T ss_dssp             HHHHHHHHHHHHHHHHCSSS-S--SHHHHHHHHHHHHHGGGGCS-CC-----------CSEEEEETSTTTTTHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhCceeeeccCCCHHHHHHHHHHHHHHhhhhhccC-----------CceEEecCCCCCChhHHHHHhC
Confidence            36799999999999999999999999999999999999998877631           3389999999999999999999


Q ss_pred             CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCcccHHHHHHHHccCcccCeEEEE
Q 026122           98 PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVA  177 (243)
Q Consensus        98 ~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~~~~~~l~~~~~~LkpgG~l~~  177 (243)
                      |+.+++.+|.+.+.+.+.+..++.++++|++++++++++ ..   ...+||+|+++++.++..+++.+.+.+++||.+++
T Consensus        71 p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~---~~~~fd~v~aRAv~~l~~l~~~~~~~l~~~G~~l~  146 (184)
T PF02527_consen   71 PDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PE---YRESFDVVTARAVAPLDKLLELARPLLKPGGRLLA  146 (184)
T ss_dssp             TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TT---TTT-EEEEEEESSSSHHHHHHHHGGGEEEEEEEEE
T ss_pred             CCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cc---cCCCccEEEeehhcCHHHHHHHHHHhcCCCCEEEE
Confidence            999999999999999999999999999999999999999 22   13789999999999999999999999999999999


Q ss_pred             EeCCCcHHHHHHHHHHHHHhCCeeeEEEEEecCCCCCceEEE
Q 026122          178 AKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAV  219 (243)
Q Consensus       178 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~v  219 (243)
                      +.|....+|+.++...++..+.....+.++..    .+|++|
T Consensus       147 ~KG~~~~~El~~~~~~~~~~~~~~~~v~~~~~----~~r~l~  184 (184)
T PF02527_consen  147 YKGPDAEEELEEAKKAWKKLGLKVLSVPEFEL----PERHLV  184 (184)
T ss_dssp             EESS--HHHHHTHHHHHHCCCEEEEEEEEEE-----TEEEEE
T ss_pred             EcCCChHHHHHHHHhHHHHhCCEEeeeccccC----CCCCCC
Confidence            99999999999999999999999988887663    357765

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.97  E-value=2.5e-29  Score=202.90  Aligned_cols=180  Identities=38%  Similarity=0.616  Sum_probs=158.8

Q ss_pred             HHHHHHHHHHhccCCccccCChHHHHHHhHhhhcccCCCcccccCccCCCCCCCCCeEEEEcCCCChHHHHHHHHCCCCE
Q 026122           22 GLFLKKRKQNLQKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLVLAIACPDWK  101 (243)
Q Consensus        22 ~~~~~~~~~~n~~~n~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~~~  101 (243)
                      ..|...++++|+++|+|++.+..++|.+++.+.+.....+.             +.+|||+|||+|.+++.++...++.+
T Consensus         2 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~d~i~~~~~~~-------------~~~vLDiGcGtG~~s~~la~~~~~~~   68 (181)
T TIGR00138         2 KAYLELLQKWNKRFNLTSLKTPEEIWERHILDSLKLLEYLD-------------GKKVIDIGSGAGFPGIPLAIARPELK   68 (181)
T ss_pred             HHHHHHHHHHhhcccccccCCHHHHHHHHHHHHHHHHHhcC-------------CCeEEEecCCCCccHHHHHHHCCCCe
Confidence            56889999999999999999999999999999886554443             78999999999999999998888889


Q ss_pred             EEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCcccHHHHHHHHccCcccCeEEEEEeCC
Q 026122          102 VTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGH  181 (243)
Q Consensus       102 v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  181 (243)
                      |+|+|+|+.+++.++++++++++++++++++|+.++..    .++||+|++++..++..+++.+.++|+|||.+++..+.
T Consensus        69 V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~----~~~fD~I~s~~~~~~~~~~~~~~~~LkpgG~lvi~~~~  144 (181)
T TIGR00138        69 LTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQH----EEQFDVITSRALASLNVLLELTLNLLKVGGYFLAYKGK  144 (181)
T ss_pred             EEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccc----cCCccEEEehhhhCHHHHHHHHHHhcCCCCEEEEEcCC
Confidence            99999999999999999999998889999999998642    26899999998878899999999999999999999998


Q ss_pred             CcHHHHHHHHHHHHHhCCeeeEEEEEecCCCCCceEEEEEE
Q 026122          182 DPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCL  222 (243)
Q Consensus       182 ~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~v~~~  222 (243)
                      ....++..+.+.+...|+..++..++..+    .|++++++
T Consensus       145 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~----~~~~~~~~  181 (181)
T TIGR00138       145 KYLDEIEEAKRKCQVLGVEPLEVPPLTGP----DRHLVILK  181 (181)
T ss_pred             CcHHHHHHHHHhhhhcCceEeeccccCCC----ceEEEEEC
Confidence            88888888888888899998888776644    68887763

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.89  E-value=8.7e-22  Score=163.91  Aligned_cols=141  Identities=19%  Similarity=0.201  Sum_probs=121.2

Q ss_pred             HHHHHHHHHHHHhccCCccccCChHHHHHHhHhhhcccCCCcccccCccCCCCCCCCCeEEEEcCCCChHHHHHHHHCCC
Q 026122           20 YLGLFLKKRKQNLQKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLVLAIACPD   99 (243)
Q Consensus        20 ~l~~~~~~~~~~n~~~n~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~   99 (243)
                      .+...++.+....+.+|..---+.+..|++...+.+...                +|.+|||||||||..++.+++..+.
T Consensus        12 ~v~~vF~~ia~~YD~~n~~~S~g~~~~Wr~~~i~~~~~~----------------~g~~vLDva~GTGd~a~~~~k~~g~   75 (238)
T COG2226          12 KVQKVFDKVAKKYDLMNDLMSFGLHRLWRRALISLLGIK----------------PGDKVLDVACGTGDMALLLAKSVGT   75 (238)
T ss_pred             HHHHHHHhhHHHHHhhcccccCcchHHHHHHHHHhhCCC----------------CCCEEEEecCCccHHHHHHHHhcCC
Confidence            456666666666666664333467889999998876543                2899999999999999999999888


Q ss_pred             CEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc----CcccHHHHHHHHccCcccCeEE
Q 026122          100 WKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR----AVAEMRILAEYCLPLVRVGGLF  175 (243)
Q Consensus       100 ~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~----~~~~~~~~l~~~~~~LkpgG~l  175 (243)
                      ++|+|+|+|+.|++.+++.....+..+++++++|+++++.++   ++||+|.+.    ++.+++..++++.|+|||||++
T Consensus        76 g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D---~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~  152 (238)
T COG2226          76 GEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPD---NSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRL  152 (238)
T ss_pred             ceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCC---CccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEE
Confidence            999999999999999999999988877999999999999875   899999984    5789999999999999999998


Q ss_pred             EEEe
Q 026122          176 VAAK  179 (243)
Q Consensus       176 ~~~~  179 (243)
                      ++..
T Consensus       153 ~vle  156 (238)
T COG2226         153 LVLE  156 (238)
T ss_pred             EEEE
Confidence            8876

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.87  E-value=7.4e-21  Score=158.47  Aligned_cols=146  Identities=16%  Similarity=0.204  Sum_probs=122.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      .++|||+|||+|.+++.+|++.+.++|+|||+++++.++|+++.+.+++. +++++++|+.++..... ..+||+|+||.
T Consensus        45 ~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~-~~~fD~Ii~NP  123 (248)
T COG4123          45 KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALV-FASFDLIICNP  123 (248)
T ss_pred             CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhccc-ccccCEEEeCC
Confidence            78999999999999999999877899999999999999999999999986 59999999999876432 24699999972


Q ss_pred             ----------------------cccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEEEecCCC
Q 026122          155 ----------------------VAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSP  212 (243)
Q Consensus       155 ----------------------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~  212 (243)
                                            ..+++++++.+.++|||||.++++..+   +.+.++.+.++..++...++..++ +..
T Consensus       124 Pyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~---erl~ei~~~l~~~~~~~k~i~~V~-p~~  199 (248)
T COG4123         124 PYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP---ERLAEIIELLKSYNLEPKRIQFVY-PKI  199 (248)
T ss_pred             CCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecH---HHHHHHHHHHHhcCCCceEEEEec-CCC
Confidence                                  225899999999999999999998874   566777888889999999998766 777


Q ss_pred             CCceEEEEEEeeCC
Q 026122          213 FGQRTAVVCLKSRR  226 (243)
Q Consensus       213 ~~~r~~v~~~k~~~  226 (243)
                      ++..++|+++-...
T Consensus       200 ~k~A~~vLv~~~k~  213 (248)
T COG4123         200 GKAANRVLVEAIKG  213 (248)
T ss_pred             CCcceEEEEEEecC
Confidence            77666666665433

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.85  E-value=6.5e-21  Score=159.57  Aligned_cols=141  Identities=18%  Similarity=0.207  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHHHhccCCccccCChHHHHHHhHhhhcccCCCcccccCccCCCCCCCCCeEEEEcCCCChHHHHHHHHC-C
Q 026122           20 YLGLFLKKRKQNLQKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLVLAIAC-P   98 (243)
Q Consensus        20 ~l~~~~~~~~~~n~~~n~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~VLDiGcG~G~~~~~la~~~-~   98 (243)
                      ++...++.+....+.+|-.---..+..|++.+.+.+..                .++.+|||+|||||.++..+++.. +
T Consensus         8 ~v~~~Fd~ia~~YD~~n~~ls~g~~~~wr~~~~~~~~~----------------~~g~~vLDv~~GtG~~~~~l~~~~~~   71 (233)
T PF01209_consen    8 YVRKMFDRIAPRYDRMNDLLSFGQDRRWRRKLIKLLGL----------------RPGDRVLDVACGTGDVTRELARRVGP   71 (233)
T ss_dssp             -----------------------------SHHHHHHT------------------S--EEEEET-TTSHHHHHHGGGSS-
T ss_pred             HHHHHHHHHHHHhCCCccccCCcHHHHHHHHHHhccCC----------------CCCCEEEEeCCChHHHHHHHHHHCCC
Confidence            35556666666666665543345678899988776533                227899999999999998888764 5


Q ss_pred             CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc----CcccHHHHHHHHccCcccCeE
Q 026122           99 DWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR----AVAEMRILAEYCLPLVRVGGL  174 (243)
Q Consensus        99 ~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~----~~~~~~~~l~~~~~~LkpgG~  174 (243)
                      .++|+|+|+|+.|++.+++..+..+..+++++++|+++++..+   ++||+|++.    .+.++...++++.|+|||||+
T Consensus        72 ~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d---~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~  148 (233)
T PF01209_consen   72 NGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPD---NSFDAVTCSFGLRNFPDRERALREMYRVLKPGGR  148 (233)
T ss_dssp             --EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-T---T-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEE
T ss_pred             ccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCC---CceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeE
Confidence            6899999999999999999999988889999999999998764   899999974    466899999999999999999


Q ss_pred             EEEEe
Q 026122          175 FVAAK  179 (243)
Q Consensus       175 l~~~~  179 (243)
                      +++.+
T Consensus       149 l~ile  153 (233)
T PF01209_consen  149 LVILE  153 (233)
T ss_dssp             EEEEE
T ss_pred             EEEee
Confidence            99876

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.83  E-value=8e-19  Score=146.74  Aligned_cols=158  Identities=19%  Similarity=0.180  Sum_probs=119.1

Q ss_pred             hHHHHHHhHhhhcccCCCcccccCccCCCCCCCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHH
Q 026122           43 VNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSL  121 (243)
Q Consensus        43 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~VLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~  121 (243)
                      ....|.+.++..+.+                +++.+|||+|||+|..+..++... ++++|+|+|+|+.+++.++++.+.
T Consensus        29 ~~~~~~~~~l~~l~~----------------~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~   92 (231)
T TIGR02752        29 RHKKWRKDTMKRMNV----------------QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKD   92 (231)
T ss_pred             chHHHHHHHHHhcCC----------------CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHh
Confidence            355666666664432                237899999999999998898775 568999999999999999999988


Q ss_pred             cCCCCEEEEEccccccccCCcCCCCceEEEEcC----cccHHHHHHHHccCcccCeEEEEEeCCCc-HH-----------
Q 026122          122 TQLLNVQIVRGRAETLGKDVSFREQYDVAVARA----VAEMRILAEYCLPLVRVGGLFVAAKGHDP-QE-----------  185 (243)
Q Consensus       122 ~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~----~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-~~-----------  185 (243)
                      .++.+++++++|+.+++..   .++||+|++..    ..++..+++++.++|+|||.+++...... ..           
T Consensus        93 ~~~~~v~~~~~d~~~~~~~---~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~  169 (231)
T TIGR02752        93 AGLHNVELVHGNAMELPFD---DNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFK  169 (231)
T ss_pred             cCCCceEEEEechhcCCCC---CCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHc
Confidence            8887899999999887543   26899999853    45788999999999999999988653211 00           


Q ss_pred             ----------------------------HHHHHHHHHHHhCCeeeEEEEEecCCCCCceEEEEEEe
Q 026122          186 ----------------------------EVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLK  223 (243)
Q Consensus       186 ----------------------------~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~v~~~k  223 (243)
                                                  ...++.+.++.+||...+++.+.    .+...+++..|
T Consensus       170 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~----~g~~~~~~~~~  231 (231)
T TIGR02752       170 YIMPLFGKLFAKSYKEYSWLQESTRDFPGMDELAEMFQEAGFKDVEVKSYT----GGVAAMHMGFK  231 (231)
T ss_pred             ChhHHhhHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCeeEEEEcc----cceEEEEEEEC
Confidence                                        01456678889999888776533    34555555443

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.82  E-value=5.4e-19  Score=140.45  Aligned_cols=122  Identities=20%  Similarity=0.266  Sum_probs=109.3

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      .++.+++|||||||.+++.++...|.++|+++|.++++++..++|+++++.+|++++.+++.+.....   .++|.||..
T Consensus        33 ~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~---~~~daiFIG  109 (187)
T COG2242          33 RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDL---PSPDAIFIG  109 (187)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCC---CCCCEEEEC
Confidence            44899999999999999999988999999999999999999999999999999999999998875432   379999998


Q ss_pred             CcccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCe
Q 026122          154 AVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGAS  200 (243)
Q Consensus       154 ~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~  200 (243)
                      +..+++.+++.+...|||||++++  ...+.+....+.+++++.|+.
T Consensus       110 Gg~~i~~ile~~~~~l~~ggrlV~--naitlE~~~~a~~~~~~~g~~  154 (187)
T COG2242         110 GGGNIEEILEAAWERLKPGGRLVA--NAITLETLAKALEALEQLGGR  154 (187)
T ss_pred             CCCCHHHHHHHHHHHcCcCCeEEE--EeecHHHHHHHHHHHHHcCCc
Confidence            889999999999999999999887  444566777888999999994

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.82  E-value=2.7e-18  Score=146.40  Aligned_cols=142  Identities=13%  Similarity=0.089  Sum_probs=104.4

Q ss_pred             HHHHHHHHHHHHHhccCCccccCChHHHHHHhHhhhcccCCCcccccCccCCCCCCCCCeEEEEcCCCChHHHHHHHHC-
Q 026122           19 FYLGLFLKKRKQNLQKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLVLAIAC-   97 (243)
Q Consensus        19 ~~l~~~~~~~~~~n~~~n~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~VLDiGcG~G~~~~~la~~~-   97 (243)
                      +.+..+++.+....+..|.......++.|++...+.+.+                +++.+|||+|||+|..+..++... 
T Consensus        33 ~~v~~~f~~~A~~YD~~~~~~s~g~~~~~r~~~~~~~~~----------------~~~~~VLDlGcGtG~~~~~la~~~~   96 (261)
T PLN02233         33 NERQALFNRIAPVYDNLNDLLSLGQHRIWKRMAVSWSGA----------------KMGDRVLDLCCGSGDLAFLLSEKVG   96 (261)
T ss_pred             HHHHHHHHHhhhHHHHhhhhhcCChhHHHHHHHHHHhCC----------------CCCCEEEEECCcCCHHHHHHHHHhC
Confidence            345545555544444444332234466787765554322                237899999999999998888764 


Q ss_pred             CCCEEEEEeCCHHHHHHHHHHHHH---cCCCCEEEEEccccccccCCcCCCCceEEEEcC----cccHHHHHHHHccCcc
Q 026122           98 PDWKVTLLESMNKRCVFLEHAVSL---TQLLNVQIVRGRAETLGKDVSFREQYDVAVARA----VAEMRILAEYCLPLVR  170 (243)
Q Consensus        98 ~~~~v~~vD~s~~~~~~a~~~~~~---~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~----~~~~~~~l~~~~~~Lk  170 (243)
                      +.++|+|+|+|++|++.|+++...   ....+++++++|+++++..+   ++||+|++..    ..++..+++++.++||
T Consensus        97 ~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~---~sfD~V~~~~~l~~~~d~~~~l~ei~rvLk  173 (261)
T PLN02233         97 SDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDD---CYFDAITMGYGLRNVVDRLKAMQEMYRVLK  173 (261)
T ss_pred             CCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCC---CCEeEEEEecccccCCCHHHHHHHHHHHcC
Confidence            457999999999999999876542   23457999999999987643   6899999853    5578999999999999


Q ss_pred             cCeEEEEEe
Q 026122          171 VGGLFVAAK  179 (243)
Q Consensus       171 pgG~l~~~~  179 (243)
                      |||++++..
T Consensus       174 pGG~l~i~d  182 (261)
T PLN02233        174 PGSRVSILD  182 (261)
T ss_pred             cCcEEEEEE
Confidence            999998765

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.80  E-value=1.2e-18  Score=129.14  Aligned_cols=100  Identities=21%  Similarity=0.267  Sum_probs=85.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCEEEEEccc-cccccCCcCCCCceEEEEc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRA-ETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~-~~~~~~~~~~~~fD~I~~~  153 (243)
                      +.+|||||||+|..++.+++.+++++|+|+|+|+++++.+++++...+. .+++++++|+ .....    .++||+|++.
T Consensus         2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~----~~~~D~v~~~   77 (112)
T PF12847_consen    2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF----LEPFDLVICS   77 (112)
T ss_dssp             TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT----SSCEEEEEEC
T ss_pred             CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc----CCCCCEEEEC
Confidence            7899999999999999999877899999999999999999999966665 5799999999 33322    2679999997


Q ss_pred             C-----cc---cHHHHHHHHccCcccCeEEEEEe
Q 026122          154 A-----VA---EMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       154 ~-----~~---~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      .     ..   +...+++.+.+.|+|||++++..
T Consensus        78 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~  111 (112)
T PF12847_consen   78 GFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT  111 (112)
T ss_dssp             SGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence            7     21   35778999999999999998854

...

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.80  E-value=4.4e-18  Score=148.54  Aligned_cols=173  Identities=17%  Similarity=0.184  Sum_probs=126.5

Q ss_pred             HHHHHHHHHHHHHhc---------cCCccccCChHHHHHHhHhhhcccCCCcccccCccCCCCCCCCCeEEEEcCCCChH
Q 026122           19 FYLGLFLKKRKQNLQ---------KMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLP   89 (243)
Q Consensus        19 ~~l~~~~~~~~~~n~---------~~n~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~VLDiGcG~G~~   89 (243)
                      +.+.+|.+....|=.         .+|.++..-..+.+.+++.++......             .++.+|||||||+|.+
T Consensus        79 ~e~~~f~~~a~~WW~~~g~~~~lh~~N~~R~~~i~~~l~~~~~~~~~~~~~-------------~~g~~ILDIGCG~G~~  145 (322)
T PLN02396         79 DELAKFSAIADTWWHSEGPFKPLHQMNPTRLAFIRSTLCRHFSKDPSSAKP-------------FEGLKFIDIGCGGGLL  145 (322)
T ss_pred             HHHHHHHHHHHHhcCCCCCchHHHHhChHHHHHHHHHHHHHhccchhhccC-------------CCCCEEEEeeCCCCHH
Confidence            347788888877743         344555555555555665554321111             1277999999999999


Q ss_pred             HHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCEEEEEccccccccCCcCCCCceEEEEcC----cccHHHHHHH
Q 026122           90 GLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAVARA----VAEMRILAEY  164 (243)
Q Consensus        90 ~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~----~~~~~~~l~~  164 (243)
                      +..+++  .+++|+|||+++++++.|+++++..+. .+++++++|+++++..   .++||+|++..    +.+...+++.
T Consensus       146 s~~La~--~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~---~~~FD~Vi~~~vLeHv~d~~~~L~~  220 (322)
T PLN02396        146 SEPLAR--MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADE---GRKFDAVLSLEVIEHVANPAEFCKS  220 (322)
T ss_pred             HHHHHH--cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhc---cCCCCEEEEhhHHHhcCCHHHHHHH
Confidence            988885  368999999999999999988766554 3699999999987643   26899999975    4578999999


Q ss_pred             HccCcccCeEEEEEeCCCcH---------------------------HHHHHHHHHHHHhCCeeeEEEEEec
Q 026122          165 CLPLVRVGGLFVAAKGHDPQ---------------------------EEVKNSERAVQLMGASLLQLCSVES  209 (243)
Q Consensus       165 ~~~~LkpgG~l~~~~~~~~~---------------------------~~~~~~~~~l~~~g~~~~~~~~~~~  209 (243)
                      +.++|||||.+++.......                           -...++.+.++++|+.+.++.-+.+
T Consensus       221 l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~~G~~~  292 (322)
T PLN02396        221 LSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEMAGFVY  292 (322)
T ss_pred             HHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEEeeeEE
Confidence            99999999999976521110                           1135667778899999988766554

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.78  E-value=1.4e-17  Score=135.08  Aligned_cols=126  Identities=19%  Similarity=0.255  Sum_probs=102.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  155 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~  155 (243)
                      +.+|||+|||+|.+++.+++..++.+|+++|+|+.+++.++++++++++.+++++++|.... .    .++||+|++...
T Consensus        32 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~-~----~~~~D~v~~~~~  106 (187)
T PRK08287         32 AKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIE-L----PGKADAIFIGGS  106 (187)
T ss_pred             CCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhh-c----CcCCCEEEECCC
Confidence            78999999999999999998888899999999999999999999998887899999987532 1    267999998763


Q ss_pred             -ccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEEEe
Q 026122          156 -AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVE  208 (243)
Q Consensus       156 -~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~  208 (243)
                       ..+..+++.+.+.|+|||.+++....  ..+..++.+.+++.|+...++..+.
T Consensus       107 ~~~~~~~l~~~~~~Lk~gG~lv~~~~~--~~~~~~~~~~l~~~g~~~~~~~~~~  158 (187)
T PRK08287        107 GGNLTAIIDWSLAHLHPGGRLVLTFIL--LENLHSALAHLEKCGVSELDCVQLQ  158 (187)
T ss_pred             ccCHHHHHHHHHHhcCCCeEEEEEEec--HhhHHHHHHHHHHCCCCcceEEEEE
Confidence             46788999999999999998875421  2334556677889998776665544

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.78  E-value=1.1e-17  Score=149.18  Aligned_cols=177  Identities=17%  Similarity=0.178  Sum_probs=123.9

Q ss_pred             HHHHHHHHHHhccCCccccCChHHHHHHhHh-hhcccCCCccccc-CccCCCCCCCCCeEEEEcCCCChHHHHHHHHCCC
Q 026122           22 GLFLKKRKQNLQKMNLTAVKDVNEVMERHID-DSLAIIPPIKNSY-TSHCDSSCNSNLKLVDVGTGAGLPGLVLAIACPD   99 (243)
Q Consensus        22 ~~~~~~~~~~n~~~n~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~-~~~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~   99 (243)
                      ..|.+.+.+..+...+..+....++|...+. +.-.+.+..++.. .++.++.++++.+|||+|||+|.+++.++...++
T Consensus       196 ~~~~~~v~RR~~gePlqYIlG~~~F~G~~f~V~p~vLIPRpeTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p~  275 (423)
T PRK14966        196 QRADRLAQRRLNGEPVAYILGVREFYGRRFAVNPNVLIPRPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERPD  275 (423)
T ss_pred             HHHHHHHHHHHcCCCceeEeeeeeecCcEEEeCCCccCCCccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCCC
Confidence            4556666666666666555555555554442 1112223222211 1233344455679999999999999999988888


Q ss_pred             CEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCc------------------------
Q 026122          100 WKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV------------------------  155 (243)
Q Consensus       100 ~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~------------------------  155 (243)
                      ++|+|+|+|+.+++.+++|++.++. +++++++|+.+.....  .++||+|++|..                        
T Consensus       276 a~VtAVDiS~~ALe~AreNa~~~g~-rV~fi~gDl~e~~l~~--~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~g  352 (423)
T PRK14966        276 AFVRASDISPPALETARKNAADLGA-RVEFAHGSWFDTDMPS--EGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTD  352 (423)
T ss_pred             CEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEcchhcccccc--CCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhC
Confidence            9999999999999999999998886 6999999986643211  257999999630                        


Q ss_pred             -----ccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEE
Q 026122          156 -----AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQL  204 (243)
Q Consensus       156 -----~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~  204 (243)
                           ..+..+++.+.+.|+|||.++++.+..+.+.+.++   +++.|+..+++
T Consensus       353 G~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~~l---l~~~Gf~~v~v  403 (423)
T PRK14966        353 FSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGV---LAENGFSGVET  403 (423)
T ss_pred             CCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHHHHHH---HHHCCCcEEEE
Confidence                 01467888888999999999998898776666554   45788876554

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.77  E-value=6.8e-18  Score=132.38  Aligned_cols=105  Identities=20%  Similarity=0.377  Sum_probs=90.8

Q ss_pred             CCCeEEEEcCCCChHHHHHH-HHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122           75 SNLKLVDVGTGAGLPGLVLA-IACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la-~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      ++.+|||+|||+|..+..++ +..++.+++|+|+|+++++.+++.++++++++++++++|+.+++..  ..++||+|+++
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~--~~~~~D~I~~~   80 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQE--LEEKFDIIISN   80 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGC--SSTTEEEEEEE
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccc--cCCCeeEEEEc
Confidence            37899999999999999999 4567899999999999999999999999998999999999996521  12689999997


Q ss_pred             C----cccHHHHHHHHccCcccCeEEEEEeCC
Q 026122          154 A----VAEMRILAEYCLPLVRVGGLFVAAKGH  181 (243)
Q Consensus       154 ~----~~~~~~~l~~~~~~LkpgG~l~~~~~~  181 (243)
                      .    ..+...+++.+.+.|++||.+++....
T Consensus        81 ~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~  112 (152)
T PF13847_consen   81 GVLHHFPDPEKVLKNIIRLLKPGGILIISDPN  112 (152)
T ss_dssp             STGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             CchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence            5    456789999999999999999887754

...

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.76  E-value=3.3e-17  Score=135.10  Aligned_cols=121  Identities=20%  Similarity=0.232  Sum_probs=104.0

Q ss_pred             cCChHHHHHHhHhhhcccCCCcccccCccCCCCCCCCCeEEEEcCCCChHHHHHHHHCCC------CEEEEEeCCHHHHH
Q 026122           40 VKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLVLAIACPD------WKVTLLESMNKRCV  113 (243)
Q Consensus        40 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~------~~v~~vD~s~~~~~  113 (243)
                      ....+++|+.++.+.+....                +.++||++||||.+++.+....+.      .+|+.+|+|++|++
T Consensus        81 SlGiHRlWKd~~v~~L~p~~----------------~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~  144 (296)
T KOG1540|consen   81 SLGIHRLWKDMFVSKLGPGK----------------GMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLA  144 (296)
T ss_pred             hcchhHHHHHHhhhccCCCC----------------CCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHH
Confidence            34678999888888776532                789999999999999888876554      79999999999999


Q ss_pred             HHHHHHHHcCCC-C--EEEEEccccccccCCcCCCCceEEEE----cCcccHHHHHHHHccCcccCeEEEEEe
Q 026122          114 FLEHAVSLTQLL-N--VQIVRGRAETLGKDVSFREQYDVAVA----RAVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       114 ~a~~~~~~~~~~-~--v~~~~~d~~~~~~~~~~~~~fD~I~~----~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      .+++.+.+.++. +  +.++++|+++++.++   ++||..++    +.+.++++.+++++|+|||||+++++.
T Consensus       145 vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd---~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLe  214 (296)
T KOG1540|consen  145 VGKQRAKKRPLKASSRVEWVEGDAEDLPFDD---DSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLE  214 (296)
T ss_pred             HHHHHHhhcCCCcCCceEEEeCCcccCCCCC---CcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEE
Confidence            999999887763 3  899999999999764   78998887    357789999999999999999999876

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.75  E-value=2.7e-17  Score=141.25  Aligned_cols=171  Identities=17%  Similarity=0.185  Sum_probs=117.9

Q ss_pred             HHHHHHHHHHHhccCCccccCChHHHHHHhHh-hhcccCCCcccccC-ccCCCCCCCCC-eEEEEcCCCChHHHHHHHHC
Q 026122           21 LGLFLKKRKQNLQKMNLTAVKDVNEVMERHID-DSLAIIPPIKNSYT-SHCDSSCNSNL-KLVDVGTGAGLPGLVLAIAC   97 (243)
Q Consensus        21 l~~~~~~~~~~n~~~n~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~-~~~~~~~~~~~-~VLDiGcG~G~~~~~la~~~   97 (243)
                      ...+.+.+.+..+.+.+..+.....+|...+. +.-.+.|..++..+ ++++....... +|||+|||||.+++.+|...
T Consensus        53 ~~~~~~~~~rr~~~~P~~yi~g~~~f~gl~~~v~~~vliPr~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~  132 (280)
T COG2890          53 LERLRELLERRAEGEPVAYILGSAEFGGLRFKVDEGVLIPRPDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEG  132 (280)
T ss_pred             HHHHHHHHHHHHCCCCHhHhhccCeecceeeeeCCCceecCCchHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhC
Confidence            45555555555445444444443344433332 22223333333221 12111122222 79999999999999999999


Q ss_pred             CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC-----------------------
Q 026122           98 PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-----------------------  154 (243)
Q Consensus        98 ~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~-----------------------  154 (243)
                      |.++|+|+|+|+.+++.|++|++.+++.++.++++|+.+-.     .++||+|++|.                       
T Consensus       133 ~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~-----~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al  207 (280)
T COG2890         133 PDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPL-----RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLAL  207 (280)
T ss_pred             cCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeeccccc-----CCceeEEEeCCCCCCCcccccChhhhccCHHHHH
Confidence            99999999999999999999999999866777777776532     26899999972                       


Q ss_pred             ------cccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCC
Q 026122          155 ------VAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGA  199 (243)
Q Consensus       155 ------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~  199 (243)
                            ..-+..++..+.+.|+|||.+++..+..+.+.+.++.   .+.|+
T Consensus       208 ~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~~~v~~~~---~~~~~  255 (280)
T COG2890         208 VGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGEAVKALF---EDTGF  255 (280)
T ss_pred             ccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcHHHHHHHH---HhcCC
Confidence                  1126788899999999999999999988877775554   48884

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.75  E-value=1.3e-17  Score=136.96  Aligned_cols=122  Identities=16%  Similarity=0.070  Sum_probs=100.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccc-cccc--cCCcCCCCceEEEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRA-ETLG--KDVSFREQYDVAVA  152 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~-~~~~--~~~~~~~~fD~I~~  152 (243)
                      +.+|||+|||+|..+..++...|+.+|+|||+|+++++.++++++..++.+++++++|+ +.+.  ..   +++||.|++
T Consensus        41 ~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~---~~~~D~V~~  117 (202)
T PRK00121         41 APIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFP---DGSLDRIYL  117 (202)
T ss_pred             CCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcC---ccccceEEE
Confidence            67999999999999999998888889999999999999999999988888899999999 6654  22   267999998


Q ss_pred             cCcc------------cHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeee
Q 026122          153 RAVA------------EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLL  202 (243)
Q Consensus       153 ~~~~------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~  202 (243)
                      +...            ....+++.+.+.|||||.+++...  ......++.+.++..|+...
T Consensus       118 ~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~--~~~~~~~~~~~~~~~g~~~~  177 (202)
T PRK00121        118 NFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD--WEGYAEYMLEVLSAEGGFLV  177 (202)
T ss_pred             ECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC--CHHHHHHHHHHHHhCccccc
Confidence            5311            147899999999999999998653  23445667788888887544

>PLN02244 tocopherol O-methyltransferase

Probab=99.75  E-value=1e-16  Score=141.59  Aligned_cols=130  Identities=14%  Similarity=0.108  Sum_probs=104.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEEEc
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      ++.+|||||||+|..+..++..+ +++|+|||+|+.+++.++++++..++. +++++++|+.+++..+   ++||+|++.
T Consensus       118 ~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~---~~FD~V~s~  193 (340)
T PLN02244        118 RPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFED---GQFDLVWSM  193 (340)
T ss_pred             CCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCC---CCccEEEEC
Confidence            47899999999999999999876 689999999999999999999888874 5999999999876543   789999996


Q ss_pred             C----cccHHHHHHHHccCcccCeEEEEEeCC------Cc----HH------------------HHHHHHHHHHHhCCee
Q 026122          154 A----VAEMRILAEYCLPLVRVGGLFVAAKGH------DP----QE------------------EVKNSERAVQLMGASL  201 (243)
Q Consensus       154 ~----~~~~~~~l~~~~~~LkpgG~l~~~~~~------~~----~~------------------~~~~~~~~l~~~g~~~  201 (243)
                      .    +.+...+++++.++|||||++++..-.      ..    ..                  ...++.+.++++||..
T Consensus       194 ~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~~  273 (340)
T PLN02244        194 ESGEHMPDKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQD  273 (340)
T ss_pred             CchhccCCHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCCCCe
Confidence            4    457889999999999999999875411      00    00                  1345667788999988


Q ss_pred             eEEEEEe
Q 026122          202 LQLCSVE  208 (243)
Q Consensus       202 ~~~~~~~  208 (243)
                      ++...+.
T Consensus       274 v~~~d~s  280 (340)
T PLN02244        274 IKTEDWS  280 (340)
T ss_pred             eEeeeCc
Confidence            7766543

>TIGR00452 methyltransferase, putative

Probab=99.74  E-value=2.1e-16  Score=137.43  Aligned_cols=182  Identities=13%  Similarity=0.053  Sum_probs=123.5

Q ss_pred             chHHHHHHHHHHHHHHHHHhc-cCCccccCChHHHHHHhHh-hhcc-cCCCcccccCccCCCCCCCCCeEEEEcCCCChH
Q 026122           13 VFMFMFFYLGLFLKKRKQNLQ-KMNLTAVKDVNEVMERHID-DSLA-IIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLP   89 (243)
Q Consensus        13 ~~~~~~~~l~~~~~~~~~~n~-~~n~~~~~~~~~~~~~~~~-~~l~-~~~~~~~~~~~~~~~~~~~~~~VLDiGcG~G~~   89 (243)
                      +...-.+.++.....+.-|.+ .+++..+....+ |..++. +.+. .....             ++++|||||||+|..
T Consensus        70 ~~~~~~~~l~~~l~~l~p~~~~~~~l~~~~~~~e-~~s~~~~~~~l~~l~~~-------------~g~~VLDvGCG~G~~  135 (314)
T TIGR00452        70 LSAGQIKRILEEIMALMPWRKGPFELSGIKIDSE-WRSDIKWDRVLPHLSPL-------------KGRTILDVGCGSGYH  135 (314)
T ss_pred             CCHHHHHHHHHHHHhcCCCCCCCcccccccCCHH-HHHHHHHHHHHHhcCCC-------------CCCEEEEeccCCcHH
Confidence            344556677777777777776 777777665322 323322 2111 11111             278999999999999


Q ss_pred             HHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC-CCCEEEEEccccccccCCcCCCCceEEEEcC----cccHHHHHHH
Q 026122           90 GLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ-LLNVQIVRGRAETLGKDVSFREQYDVAVARA----VAEMRILAEY  164 (243)
Q Consensus        90 ~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~----~~~~~~~l~~  164 (243)
                      +..++... ..+|+|+|+|+.|+..++...+..+ ..++.+...++++++..    .+||+|+|.+    ..++..++++
T Consensus       136 ~~~~~~~g-~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~----~~FD~V~s~gvL~H~~dp~~~L~e  210 (314)
T TIGR00452       136 MWRMLGHG-AKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL----YAFDTVFSMGVLYHRKSPLEHLKQ  210 (314)
T ss_pred             HHHHHHcC-CCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC----CCcCEEEEcchhhccCCHHHHHHH
Confidence            87877653 3589999999999877655444333 23588889999887643    5799999986    3478899999


Q ss_pred             HccCcccCeEEEEEe----CCC-----c------------HHHHHHHHHHHHHhCCeeeEEEEEecCCCC
Q 026122          165 CLPLVRVGGLFVAAK----GHD-----P------------QEEVKNSERAVQLMGASLLQLCSVESQSPF  213 (243)
Q Consensus       165 ~~~~LkpgG~l~~~~----~~~-----~------------~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  213 (243)
                      +++.|+|||.+++..    +..     .            .....++.++++++||..+++.........
T Consensus       211 l~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~V~i~~~~~tt~~  280 (314)
T TIGR00452       211 LKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFENFRILDVLKTTPE  280 (314)
T ss_pred             HHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeEEEEEeccCCCHH
Confidence            999999999998753    211     0            012356678889999998887665544333

Known examples to date are restricted to the proteobacteria.

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.74  E-value=5.8e-17  Score=139.82  Aligned_cols=176  Identities=17%  Similarity=0.195  Sum_probs=121.4

Q ss_pred             HHHHHHHHHHhccCCccccCChHHHHHHhHhhhcc-cCCCccccc-CccCCCCC---CCCCeEEEEcCCCChHHHHHHHH
Q 026122           22 GLFLKKRKQNLQKMNLTAVKDVNEVMERHIDDSLA-IIPPIKNSY-TSHCDSSC---NSNLKLVDVGTGAGLPGLVLAIA   96 (243)
Q Consensus        22 ~~~~~~~~~~n~~~n~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~-~~~~~~~~---~~~~~VLDiGcG~G~~~~~la~~   96 (243)
                      ..|...+.+..+..++..+.+..++|..+|..+.. +.|..++.. .++.+..+   ++..+|||+|||+|.+++.++..
T Consensus        56 ~~~~~~~~~r~~~~pl~yi~g~~~f~g~~f~v~~~vliPr~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~  135 (284)
T TIGR00536        56 ERIFRLVLRRVKGVPVAYLLGSKEFYGLEFFVNEHVLIPRPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYE  135 (284)
T ss_pred             HHHHHHHHHHHcCCCHHHHhCcceEcCeEEEECCCCcCCCCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHH
Confidence            34444555555556666666666666555432222 223222111 11111111   12268999999999999999998


Q ss_pred             CCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccccccCCcCCCCceEEEEcC----------c----------
Q 026122           97 CPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAVARA----------V----------  155 (243)
Q Consensus        97 ~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~fD~I~~~~----------~----------  155 (243)
                      .++.+|+|+|+|+++++.+++|++.+++.+ ++++++|+.+...    ..+||+|++|.          .          
T Consensus       136 ~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~----~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~  211 (284)
T TIGR00536       136 FPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLA----GQKIDIIVSNPPYIDEEDLADLPNVVRFEPLL  211 (284)
T ss_pred             CCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCc----CCCccEEEECCCCCCcchhhcCCcccccCcHH
Confidence            888999999999999999999999999864 9999999876321    13799999962          0          


Q ss_pred             ---------ccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeE
Q 026122          156 ---------AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQ  203 (243)
Q Consensus       156 ---------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~  203 (243)
                               ..+..+++.+.++|+|||.+++..+.++...+.++...  ..|+...+
T Consensus       212 AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~~~~~~~~--~~~~~~~~  266 (284)
T TIGR00536       212 ALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKSLKELLRI--KFTWYDVE  266 (284)
T ss_pred             HhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHh--cCCCceeE
Confidence                     13567889999999999999999998877776654431  35775443

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.73  E-value=1.7e-17  Score=136.41  Aligned_cols=99  Identities=22%  Similarity=0.298  Sum_probs=88.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~-  154 (243)
                      +.+|||+|||-|.++..+|+.  +++|+|+|+++++++.|+..+...++. +++.+..++++....   ++||+|+|.. 
T Consensus        60 g~~vLDvGCGgG~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha~e~gv~-i~y~~~~~edl~~~~---~~FDvV~cmEV  133 (243)
T COG2227          60 GLRVLDVGCGGGILSEPLARL--GASVTGIDASEKPIEVAKLHALESGVN-IDYRQATVEDLASAG---GQFDVVTCMEV  133 (243)
T ss_pred             CCeEEEecCCccHhhHHHHHC--CCeeEEecCChHHHHHHHHhhhhcccc-ccchhhhHHHHHhcC---CCccEEEEhhH
Confidence            889999999999999999976  589999999999999999999998885 888899999986542   6899999975 


Q ss_pred             ---cccHHHHHHHHccCcccCeEEEEEeC
Q 026122          155 ---VAEMRILAEYCLPLVRVGGLFVAAKG  180 (243)
Q Consensus       155 ---~~~~~~~l~~~~~~LkpgG~l~~~~~  180 (243)
                         +++++.+++.|.+++||||.+++..-
T Consensus       134 lEHv~dp~~~~~~c~~lvkP~G~lf~STi  162 (243)
T COG2227         134 LEHVPDPESFLRACAKLVKPGGILFLSTI  162 (243)
T ss_pred             HHccCCHHHHHHHHHHHcCCCcEEEEecc
Confidence               66899999999999999999888663

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.73  E-value=5.8e-17  Score=149.76  Aligned_cols=150  Identities=16%  Similarity=0.210  Sum_probs=111.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      +.+|||+|||+|.+++.++...|+.+|+|+|+|+.+++.|++|++.+++. +++++++|+.+...    .++||+|++|.
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~----~~~fDlIvsNP  214 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIE----KQKFDFIVSNP  214 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCc----CCCccEEEECC
Confidence            46899999999999999998888899999999999999999999999875 59999999865321    25799999962


Q ss_pred             ------------------------------cccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEE
Q 026122          155 ------------------------------VAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQL  204 (243)
Q Consensus       155 ------------------------------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~  204 (243)
                                                    ...+..+++.+.++|+|||.+++..+..+.+.+.++.   .+.|+..+.+
T Consensus       215 PYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~q~~~v~~~~---~~~g~~~~~~  291 (506)
T PRK01544        215 PYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFKQEEAVTQIF---LDHGYNIESV  291 (506)
T ss_pred             CCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCchHHHHHHHH---HhcCCCceEE
Confidence                                          0124667888999999999999988887777665544   4778876554


Q ss_pred             EEEecCCCCCceEEEEEEeeCCCCCCCCCCCCC
Q 026122          205 CSVESQSPFGQRTAVVCLKSRRTPKKYPRDPGT  237 (243)
Q Consensus       205 ~~~~~~~~~~~r~~v~~~k~~~~~~~yp~~~~~  237 (243)
                      ..   .....+|.+++.+-.  ...-|.|+.|.
T Consensus       292 ~~---D~~g~~R~v~~~~~~--~~rs~~rr~g~  319 (506)
T PRK01544        292 YK---DLQGHSRVILISPIN--LNRSYARRIGK  319 (506)
T ss_pred             Ee---cCCCCceEEEecccc--CCcceeccCCC
Confidence            32   122235555544433  23356666553

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.73  E-value=4e-17  Score=130.54  Aligned_cols=103  Identities=21%  Similarity=0.270  Sum_probs=88.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  155 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~  155 (243)
                      +.+|||+|||+|.+++.+++..+..+|+++|+|+.+++.++++++.+++.+++++.+|+.+...    .++||+|++|..
T Consensus        32 ~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~----~~~fD~Iv~NPP  107 (170)
T PF05175_consen   32 GGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALP----DGKFDLIVSNPP  107 (170)
T ss_dssp             TCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCC----TTCEEEEEE---
T ss_pred             CCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccccc----ccceeEEEEccc
Confidence            7799999999999999999988888999999999999999999999999889999999877443    278999999841


Q ss_pred             ---------ccHHHHHHHHccCcccCeEEEEEeCCC
Q 026122          156 ---------AEMRILAEYCLPLVRVGGLFVAAKGHD  182 (243)
Q Consensus       156 ---------~~~~~~l~~~~~~LkpgG~l~~~~~~~  182 (243)
                               .....+++.+.++|+|||.+++.....
T Consensus       108 ~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~  143 (170)
T PF05175_consen  108 FHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSH  143 (170)
T ss_dssp             SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred             hhcccccchhhHHHHHHHHHHhccCCCEEEEEeecC
Confidence                     136889999999999999998766543

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PRK04266 fibrillarin; Provisional

Probab=99.73  E-value=3.7e-16  Score=130.26  Aligned_cols=147  Identities=18%  Similarity=0.166  Sum_probs=102.6

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEE
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      ++++.+|||+|||+|..+..++...+..+|+|+|++++|++.+.++++..  .|+.++.+|+.+........++||+|++
T Consensus        70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~--~nv~~i~~D~~~~~~~~~l~~~~D~i~~  147 (226)
T PRK04266         70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER--KNIIPILADARKPERYAHVVEKVDVIYQ  147 (226)
T ss_pred             CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc--CCcEEEECCCCCcchhhhccccCCEEEE
Confidence            34588999999999999999998876679999999999999887776653  5789999998752111111257999998


Q ss_pred             cCcc--cHHHHHHHHccCcccCeEEEEE------eCC-CcHHHHHHHHHHHHHhCCeeeEEEEEecCCCCCceEEEEEEe
Q 026122          153 RAVA--EMRILAEYCLPLVRVGGLFVAA------KGH-DPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLK  223 (243)
Q Consensus       153 ~~~~--~~~~~l~~~~~~LkpgG~l~~~------~~~-~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~v~~~k  223 (243)
                      ....  ....+++.+.+.|||||++++.      .-. .......+..+.++.+||+.++....  .....++..++.++
T Consensus       148 d~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~~l--~p~~~~h~~~v~~~  225 (226)
T PRK04266        148 DVAQPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVVDL--EPYHKDHAAVVARK  225 (226)
T ss_pred             CCCChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEEEcC--CCCcCCeEEEEEEc
Confidence            5432  2245689999999999999983      211 11222334567888999988876542  22223445555443

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.73  E-value=6.5e-17  Score=136.55  Aligned_cols=177  Identities=19%  Similarity=0.198  Sum_probs=121.7

Q ss_pred             HHHHHHHHHHHhccCCccccCChHHHHHHhHhhhccc-CCCccc-ccCccCCCCC-CCCCeEEEEcCCCChHHHHHHHHC
Q 026122           21 LGLFLKKRKQNLQKMNLTAVKDVNEVMERHIDDSLAI-IPPIKN-SYTSHCDSSC-NSNLKLVDVGTGAGLPGLVLAIAC   97 (243)
Q Consensus        21 l~~~~~~~~~~n~~~n~~~~~~~~~~~~~~~~~~l~~-~~~~~~-~~~~~~~~~~-~~~~~VLDiGcG~G~~~~~la~~~   97 (243)
                      +..|.+.+.+.....++.......++|..++...... .+...+ .+..+.+..+ ..+.+|||+|||+|..++.++...
T Consensus        30 ~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~l~~~~~~~~~ilDig~G~G~~~~~l~~~~  109 (251)
T TIGR03534        30 LARFEALLARRAKGEPVAYILGEREFYGLDFKVSPGVLIPRPDTEELVEAALERLKKGPLRVLDLGTGSGAIALALAKER  109 (251)
T ss_pred             HHHHHHHHHHHHcCCCHHHHcccceEeceEEEECCCcccCCCChHHHHHHHHHhcccCCCeEEEEeCcHhHHHHHHHHHC
Confidence            3445555555566667766665556665554322111 111111 0011111112 224689999999999999999888


Q ss_pred             CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCc----------------------
Q 026122           98 PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV----------------------  155 (243)
Q Consensus        98 ~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~----------------------  155 (243)
                      ++.+++|+|+++.+++.++++++.+++.+++++++|+.+...    .++||+|+++..                      
T Consensus       110 ~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~----~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~  185 (251)
T TIGR03534       110 PDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLP----GGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLA  185 (251)
T ss_pred             CCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCc----CCceeEEEECCCCCchhhhhhcChhhhhcCCHHH
Confidence            889999999999999999999999998889999999976321    268999999520                      


Q ss_pred             --------ccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEE
Q 026122          156 --------AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQL  204 (243)
Q Consensus       156 --------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~  204 (243)
                              ..+..+++.+.++|+|||.+++..+..+.+++   .+.+++.||..+..
T Consensus       186 ~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~---~~~l~~~gf~~v~~  239 (251)
T TIGR03534       186 LFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAV---RALFEAAGFADVET  239 (251)
T ss_pred             HcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHH---HHHHHhCCCCceEE
Confidence                    01347788999999999999998876655544   44556889875554

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.73  E-value=2.1e-16  Score=134.25  Aligned_cols=100  Identities=20%  Similarity=0.282  Sum_probs=85.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      +.+|||+|||+|..+..++..  +.+|+|+|+|+++++.|+++.+..++. +++++++|+.++....  +++||+|++..
T Consensus        45 ~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~--~~~fD~V~~~~  120 (255)
T PRK11036         45 PLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHL--ETPVDLILFHA  120 (255)
T ss_pred             CCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhc--CCCCCEEEehh
Confidence            679999999999999888865  579999999999999999999988874 6999999998875321  36899999976


Q ss_pred             ----cccHHHHHHHHccCcccCeEEEEEe
Q 026122          155 ----VAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       155 ----~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                          +.++..+++.+.++|||||.+++..
T Consensus       121 vl~~~~~~~~~l~~~~~~LkpgG~l~i~~  149 (255)
T PRK11036        121 VLEWVADPKSVLQTLWSVLRPGGALSLMF  149 (255)
T ss_pred             HHHhhCCHHHHHHHHHHHcCCCeEEEEEE
Confidence                3477899999999999999998653

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.71  E-value=2e-16  Score=119.01  Aligned_cols=101  Identities=22%  Similarity=0.197  Sum_probs=87.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~-  154 (243)
                      +.+|||+|||+|..+..+++..|+.+|+++|+|+.+++.++++++.+++.+++++.+|+.+....  ..++||+|++.. 
T Consensus        20 ~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~D~v~~~~~   97 (124)
T TIGR02469        20 GDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALED--SLPEPDRVFIGGS   97 (124)
T ss_pred             CCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChh--hcCCCCEEEECCc
Confidence            67999999999999999998888889999999999999999999998888899999988753221  126899999875 


Q ss_pred             cccHHHHHHHHccCcccCeEEEEE
Q 026122          155 VAEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       155 ~~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                      ......+++.+.+.|+|||.+++.
T Consensus        98 ~~~~~~~l~~~~~~Lk~gG~li~~  121 (124)
T TIGR02469        98 GGLLQEILEAIWRRLRPGGRIVLN  121 (124)
T ss_pred             chhHHHHHHHHHHHcCCCCEEEEE
Confidence            446789999999999999998874

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.71  E-value=4.7e-16  Score=136.27  Aligned_cols=129  Identities=16%  Similarity=0.111  Sum_probs=99.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      +.+|||||||+|..+..++...+ .+|+|+|+|+.++..++...+..+. .+++++.+|+++++. .   ++||+|+|.+
T Consensus       123 g~~VLDIGCG~G~~~~~la~~g~-~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~---~~FD~V~s~~  197 (322)
T PRK15068        123 GRTVLDVGCGNGYHMWRMLGAGA-KLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-L---KAFDTVFSMG  197 (322)
T ss_pred             CCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-c---CCcCEEEECC
Confidence            78999999999999988887643 4799999999988765554444332 369999999998865 2   7899999975


Q ss_pred             ----cccHHHHHHHHccCcccCeEEEEEe----CCC-----c------------HHHHHHHHHHHHHhCCeeeEEEEEec
Q 026122          155 ----VAEMRILAEYCLPLVRVGGLFVAAK----GHD-----P------------QEEVKNSERAVQLMGASLLQLCSVES  209 (243)
Q Consensus       155 ----~~~~~~~l~~~~~~LkpgG~l~~~~----~~~-----~------------~~~~~~~~~~l~~~g~~~~~~~~~~~  209 (243)
                          ..++..+++++++.|+|||.+++..    +..     .            .....++.++++++||..+++.....
T Consensus       198 vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i~~~~~~~  277 (322)
T PRK15068        198 VLYHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDVRIVDVSV  277 (322)
T ss_pred             hhhccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceEEEEeCCC
Confidence                3468899999999999999998752    111     0            11345678889999999888776543

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.71  E-value=2.6e-16  Score=134.84  Aligned_cols=177  Identities=19%  Similarity=0.184  Sum_probs=122.3

Q ss_pred             HHHHHHHHHHHhccCCccccCChHHHHHHhHhhhcc-cCCCccccc-CccCCC--CCCCCCeEEEEcCCCChHHHHHHHH
Q 026122           21 LGLFLKKRKQNLQKMNLTAVKDVNEVMERHIDDSLA-IIPPIKNSY-TSHCDS--SCNSNLKLVDVGTGAGLPGLVLAIA   96 (243)
Q Consensus        21 l~~~~~~~~~~n~~~n~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~-~~~~~~--~~~~~~~VLDiGcG~G~~~~~la~~   96 (243)
                      ...|.+.+.+..+.+++....+..++|..++..... +.+..++.. .++.+.  ...++.+|||+|||+|.+++.++..
T Consensus        50 ~~~~~~~~~~~~~~~p~~~i~g~~~f~~~~~~~~~~~lipr~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~  129 (275)
T PRK09328         50 LERFRALVARRAAGEPLQYILGEAEFWGLDFKVSPGVLIPRPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKE  129 (275)
T ss_pred             HHHHHHHHHHHHcCCCHHHHceeceEcCcEEEECCCceeCCCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHH
Confidence            355666666667777777666666666665543321 122222111 111111  1234679999999999999999998


Q ss_pred             CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC----------------------
Q 026122           97 CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA----------------------  154 (243)
Q Consensus        97 ~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~----------------------  154 (243)
                      .+..+|+|+|+|+.+++.++++++.....+++++++|+.+...    .++||+|+++.                      
T Consensus       130 ~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~----~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~  205 (275)
T PRK09328        130 RPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLP----GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHL  205 (275)
T ss_pred             CCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCC----CCceeEEEECCCcCCcchhhhCCchhhhcCCch
Confidence            8889999999999999999999883333569999999865322    26899999962                      


Q ss_pred             --------cccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEE
Q 026122          155 --------VAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQL  204 (243)
Q Consensus       155 --------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~  204 (243)
                              ...+..+++.+.++|+|||.+++..+..+.+++   .+.+...||..+..
T Consensus       206 al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~~~~~---~~~l~~~gf~~v~~  260 (275)
T PRK09328        206 ALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQGEAV---RALLAAAGFADVET  260 (275)
T ss_pred             hhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchHHHHH---HHHHHhCCCceeEE
Confidence                    012467888889999999999998887665554   44555889864443

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.71  E-value=6.6e-16  Score=126.45  Aligned_cols=124  Identities=17%  Similarity=0.232  Sum_probs=100.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCC-CCEEEEEccccccccCCcCCCCceEEEE
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      ++.+|||+|||+|.+++.+++.. ++.+|+++|+++.+++.++++++.+++ .+++++++|..+....  ..++||+|++
T Consensus        40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~--~~~~~D~V~~  117 (198)
T PRK00377         40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFT--INEKFDRIFI  117 (198)
T ss_pred             CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhh--cCCCCCEEEE
Confidence            37899999999999998888764 567999999999999999999999985 6799999998774321  1267999999


Q ss_pred             cC-cccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeee
Q 026122          153 RA-VAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLL  202 (243)
Q Consensus       153 ~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~  202 (243)
                      .. ...+..+++.+.+.|+|||++++...  ..+.+.++.+.+++.|+...
T Consensus       118 ~~~~~~~~~~l~~~~~~LkpgG~lv~~~~--~~~~~~~~~~~l~~~g~~~~  166 (198)
T PRK00377        118 GGGSEKLKEIISASWEIIKKGGRIVIDAI--LLETVNNALSALENIGFNLE  166 (198)
T ss_pred             CCCcccHHHHHHHHHHHcCCCcEEEEEee--cHHHHHHHHHHHHHcCCCeE
Confidence            64 45788999999999999999886333  34556777888889998543

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.71  E-value=3.9e-16  Score=127.70  Aligned_cols=97  Identities=22%  Similarity=0.217  Sum_probs=83.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  155 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~  155 (243)
                      +.+|||+|||+|..++.+|..  +.+|+|+|+|+.+++.++++++..++.++++.+.|+.+...    +++||+|+++..
T Consensus        31 ~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~----~~~fD~I~~~~~  104 (197)
T PRK11207         31 PGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTF----DGEYDFILSTVV  104 (197)
T ss_pred             CCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCc----CCCcCEEEEecc
Confidence            679999999999999999865  57999999999999999999998888789999999987654    267999998752


Q ss_pred             ------ccHHHHHHHHccCcccCeEEEEE
Q 026122          156 ------AEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       156 ------~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                            .+...+++.+.++|+|||.+++.
T Consensus       105 ~~~~~~~~~~~~l~~i~~~LkpgG~~~~~  133 (197)
T PRK11207        105 LMFLEAKTIPGLIANMQRCTKPGGYNLIV  133 (197)
T ss_pred             hhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence                  24689999999999999996554

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.70  E-value=4.8e-16  Score=133.23  Aligned_cols=130  Identities=15%  Similarity=0.164  Sum_probs=103.2

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEE
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      ++++.+|||+|||+|..++.+++.. +..+|+++|+++.+++.++++.+..+..+++++.+|+++++...   ++||+|+
T Consensus        75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~---~~fD~Vi  151 (272)
T PRK11873         75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVAD---NSVDVII  151 (272)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCC---CceeEEE
Confidence            4568999999999999887777654 45689999999999999999999888888999999998876532   6899999


Q ss_pred             EcC----cccHHHHHHHHccCcccCeEEEEEeC---CCcH-----------------HHHHHHHHHHHHhCCeeeEEE
Q 026122          152 ARA----VAEMRILAEYCLPLVRVGGLFVAAKG---HDPQ-----------------EEVKNSERAVQLMGASLLQLC  205 (243)
Q Consensus       152 ~~~----~~~~~~~l~~~~~~LkpgG~l~~~~~---~~~~-----------------~~~~~~~~~l~~~g~~~~~~~  205 (243)
                      ++.    ..+...+++++.++|||||++++...   ....                 ....++.+.++..||....+.
T Consensus       152 ~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~i~  229 (272)
T PRK11873        152 SNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDITIQ  229 (272)
T ss_pred             EcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCceEEE
Confidence            976    34678899999999999999988531   1000                 122456677888999877654

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.70  E-value=4e-16  Score=127.48  Aligned_cols=120  Identities=16%  Similarity=0.241  Sum_probs=95.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      ++.+|||+|||+|.+++.+++..++.+|+++|+|+++++.++++++++++.+++++++|+.+....  ....+|.++...
T Consensus        40 ~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~--~~~~~d~v~~~~  117 (196)
T PRK07402         40 PDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQ--LAPAPDRVCIEG  117 (196)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhh--CCCCCCEEEEEC
Confidence            378999999999999999987777889999999999999999999999988899999998653211  113468887765


Q ss_pred             cccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhC
Q 026122          155 VAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMG  198 (243)
Q Consensus       155 ~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g  198 (243)
                      ...+..+++.+.+.|+|||++++....  .+.+.+..+.++..+
T Consensus       118 ~~~~~~~l~~~~~~LkpgG~li~~~~~--~~~~~~~~~~~~~~~  159 (196)
T PRK07402        118 GRPIKEILQAVWQYLKPGGRLVATASS--LEGLYAISEGLAQLQ  159 (196)
T ss_pred             CcCHHHHHHHHHHhcCCCeEEEEEeec--HHHHHHHHHHHHhcC
Confidence            567789999999999999998887643  334444555555543

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.70  E-value=4.6e-16  Score=129.43  Aligned_cols=127  Identities=13%  Similarity=0.069  Sum_probs=102.9

Q ss_pred             CeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122           77 LKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVARA-  154 (243)
Q Consensus        77 ~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~~~~-  154 (243)
                      ++|||||||+|..+..++..+++++|+|+|+|+++++.++++++..++. +++++.+|+.+.+.    +++||+|++.. 
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~----~~~fD~I~~~~~   76 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPF----PDTYDLVFGFEV   76 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCC----CCCCCEeehHHH
Confidence            3799999999999999998888889999999999999999999888875 48999999866533    26899999854 


Q ss_pred             ---cccHHHHHHHHccCcccCeEEEEEeCCC-------------cHHHHHHHHHHHHHhCCeeeEEEEE
Q 026122          155 ---VAEMRILAEYCLPLVRVGGLFVAAKGHD-------------PQEEVKNSERAVQLMGASLLQLCSV  207 (243)
Q Consensus       155 ---~~~~~~~l~~~~~~LkpgG~l~~~~~~~-------------~~~~~~~~~~~l~~~g~~~~~~~~~  207 (243)
                         +.+...+++.+.++|+|||++++..-..             ......++.+.+++.||.+.+...+
T Consensus        77 l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~~  145 (224)
T smart00828       77 IHHIKDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGVDA  145 (224)
T ss_pred             HHhCCCHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeEEC
Confidence               4578999999999999999998764210             0112456777888999998877654

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.70  E-value=4.2e-16  Score=133.31  Aligned_cols=128  Identities=20%  Similarity=0.200  Sum_probs=98.2

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccccccCCcCCCCceEE
Q 026122           72 SCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVA  150 (243)
Q Consensus        72 ~~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~fD~I  150 (243)
                      ...++.+|||+|||||.+++..++. +..+|+|+|+++.+++.+++|++.|++.. ++....+..+...    .++||+|
T Consensus       159 ~~~~g~~vlDvGcGSGILaIAa~kL-GA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~----~~~~DvI  233 (300)
T COG2264         159 LLKKGKTVLDVGCGSGILAIAAAKL-GAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPE----NGPFDVI  233 (300)
T ss_pred             hhcCCCEEEEecCChhHHHHHHHHc-CCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcc----cCcccEE
Confidence            4457899999999999999887765 56789999999999999999999999864 3333333333322    2589999


Q ss_pred             EEcCccc-HHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEE
Q 026122          151 VARAVAE-MRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCS  206 (243)
Q Consensus       151 ~~~~~~~-~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~  206 (243)
                      ++|-.++ +..+...+.+.+||||++++ +| -.........+++...||.+.....
T Consensus       234 VANILA~vl~~La~~~~~~lkpgg~lIl-SG-Il~~q~~~V~~a~~~~gf~v~~~~~  288 (300)
T COG2264         234 VANILAEVLVELAPDIKRLLKPGGRLIL-SG-ILEDQAESVAEAYEQAGFEVVEVLE  288 (300)
T ss_pred             EehhhHHHHHHHHHHHHHHcCCCceEEE-Ee-ehHhHHHHHHHHHHhCCCeEeEEEe
Confidence            9998764 57888899999999999776 33 3333455667777789998877643

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.69  E-value=2.1e-15  Score=121.43  Aligned_cols=124  Identities=11%  Similarity=0.069  Sum_probs=98.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  155 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~  155 (243)
                      +.+|||+|||+|.++..++...+  +|+++|+|+.+++.++++.+.++. +++++++|+.+..     .++||+|+++..
T Consensus        20 ~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~-----~~~fD~Vi~n~p   91 (179)
T TIGR00537        20 PDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNV-GLDVVMTDLFKGV-----RGKFDVILFNPP   91 (179)
T ss_pred             CCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCC-ceEEEEccccccc-----CCcccEEEECCC
Confidence            67899999999999988887643  899999999999999999988876 5899999987643     258999999731


Q ss_pred             c-------------------------cHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEEEec
Q 026122          156 A-------------------------EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVES  209 (243)
Q Consensus       156 ~-------------------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~  209 (243)
                      -                         .+..+++.+.++|+|||.+++......  ...++.+.+++.||....+.+...
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~--~~~~~~~~l~~~gf~~~~~~~~~~  168 (179)
T TIGR00537        92 YLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN--GEPDTFDKLDERGFRYEIVAERGL  168 (179)
T ss_pred             CCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC--ChHHHHHHHHhCCCeEEEEEEeec
Confidence            0                         146789999999999999988775433  124446667799998887776443

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.69  E-value=3.4e-16  Score=127.76  Aligned_cols=125  Identities=11%  Similarity=0.056  Sum_probs=98.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  155 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~  155 (243)
                      ..+|||||||+|..+..+|..+|+.+|+|+|+++.+++.++++++..++.|++++++|+.++.......+++|.|+++-.
T Consensus        17 ~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~p   96 (194)
T TIGR00091        17 APLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNFP   96 (194)
T ss_pred             CceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEECC
Confidence            56999999999999999999999999999999999999999999999988999999999875421111257999998642


Q ss_pred             cc------------HHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhC-Ceee
Q 026122          156 AE------------MRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMG-ASLL  202 (243)
Q Consensus       156 ~~------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g-~~~~  202 (243)
                      ..            ...+++.+.++|||||.+++....  .....++.+.+...+ |...
T Consensus        97 dpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~--~~~~~~~~~~~~~~~~f~~~  154 (194)
T TIGR00091        97 DPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDN--EPLFEDMLKVLSENDLFENT  154 (194)
T ss_pred             CcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCC--HHHHHHHHHHHHhCCCeEec
Confidence            11            267999999999999999886643  233444556666666 5443

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.69  E-value=8.3e-16  Score=134.83  Aligned_cols=127  Identities=20%  Similarity=0.225  Sum_probs=101.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~-  154 (243)
                      +.+|||||||+|..++.+++..++.+|+++|+|+++++.++++..   ..+++++.+|+++++...   ++||+|+++. 
T Consensus       114 ~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~---~~~i~~i~gD~e~lp~~~---~sFDvVIs~~~  187 (340)
T PLN02490        114 NLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIIEGDAEDLPFPT---DYADRYVSAGS  187 (340)
T ss_pred             CCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh---ccCCeEEeccHHhCCCCC---CceeEEEEcCh
Confidence            679999999999998888887777899999999999999888754   346889999999876542   6899999865 


Q ss_pred             ---cccHHHHHHHHccCcccCeEEEEEeCCCc----H----------HHHHHHHHHHHHhCCeeeEEEEEe
Q 026122          155 ---VAEMRILAEYCLPLVRVGGLFVAAKGHDP----Q----------EEVKNSERAVQLMGASLLQLCSVE  208 (243)
Q Consensus       155 ---~~~~~~~l~~~~~~LkpgG~l~~~~~~~~----~----------~~~~~~~~~l~~~g~~~~~~~~~~  208 (243)
                         ..+...+++++.++|+|||++++......    .          ....++.+.++++||..++++.+.
T Consensus       188 L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~i~  258 (340)
T PLN02490        188 IEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKRIG  258 (340)
T ss_pred             hhhCCCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEEcC
Confidence               44678899999999999999887542110    0          123566788889999988876643

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.69  E-value=4.3e-16  Score=133.29  Aligned_cols=127  Identities=16%  Similarity=0.161  Sum_probs=92.0

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccccccCCcCCCCceEEE
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      +++|.+|||||||.|.+++.+|+.+ +++|+||.+|+++.+.+++.+++.|+.+ +++..+|..+++      .+||.|+
T Consensus        60 l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~------~~fD~Iv  132 (273)
T PF02353_consen   60 LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP------GKFDRIV  132 (273)
T ss_dssp             --TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---------S-SEEE
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC------CCCCEEE
Confidence            4569999999999999999999987 7899999999999999999999999965 999999998764      5899999


Q ss_pred             EcC------cccHHHHHHHHccCcccCeEEEEEe--CCC----------------------cHHHHHHHHHHHHHhCCee
Q 026122          152 ARA------VAEMRILAEYCLPLVRVGGLFVAAK--GHD----------------------PQEEVKNSERAVQLMGASL  201 (243)
Q Consensus       152 ~~~------~~~~~~~l~~~~~~LkpgG~l~~~~--~~~----------------------~~~~~~~~~~~l~~~g~~~  201 (243)
                      |-.      ..++..+++.+.++|||||++++..  ...                      ..+.+.++...++..||.+
T Consensus       133 Si~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFPgg~lps~~~~~~~~~~~~l~v  212 (273)
T PF02353_consen  133 SIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKYIFPGGYLPSLSEILRAAEDAGLEV  212 (273)
T ss_dssp             EESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS---BHHHHHHHHHHTT-EE
T ss_pred             EEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEeeCCCCCCCCHHHHHHHHhcCCEEE
Confidence            954      2478999999999999999988542  111                      0111234555567888887


Q ss_pred             eEEEE
Q 026122          202 LQLCS  206 (243)
Q Consensus       202 ~~~~~  206 (243)
                      ....+
T Consensus       213 ~~~~~  217 (273)
T PF02353_consen  213 EDVEN  217 (273)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            77654

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.69  E-value=1.1e-16  Score=114.57  Aligned_cols=91  Identities=20%  Similarity=0.230  Sum_probs=75.5

Q ss_pred             EEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC----c
Q 026122           80 VDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA----V  155 (243)
Q Consensus        80 LDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~----~  155 (243)
                      ||+|||+|..+..++.. ++.+|+++|+++++++.+++.....   ++.+.++|+++++..+   ++||+|++..    .
T Consensus         1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~---~~~~~~~d~~~l~~~~---~sfD~v~~~~~~~~~   73 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNE---GVSFRQGDAEDLPFPD---NSFDVVFSNSVLHHL   73 (95)
T ss_dssp             EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTS---TEEEEESBTTSSSS-T---T-EEEEEEESHGGGS
T ss_pred             CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhccccc---CchheeehHHhCcccc---ccccccccccceeec
Confidence            89999999999898877 7889999999999999888876543   3669999999997654   8999999975    3


Q ss_pred             ccHHHHHHHHccCcccCeEEEE
Q 026122          156 AEMRILAEYCLPLVRVGGLFVA  177 (243)
Q Consensus       156 ~~~~~~l~~~~~~LkpgG~l~~  177 (243)
                      .++..+++++.|+|||||++++
T Consensus        74 ~~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   74 EDPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             SHHHHHHHHHHHHEEEEEEEEE
T ss_pred             cCHHHHHHHHHHHcCcCeEEeC
Confidence            5789999999999999999875

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.69  E-value=6.7e-16  Score=133.11  Aligned_cols=120  Identities=18%  Similarity=0.221  Sum_probs=97.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      +.+|||+|||+|.+++.++...++.+|+|+|+|+.+++.|++|++.+++. +++++++|+.+...    .++||+|++|.
T Consensus       122 ~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~----~~~fD~Iv~NP  197 (284)
T TIGR03533       122 VKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALP----GRKYDLIVSNP  197 (284)
T ss_pred             CCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccC----CCCccEEEECC
Confidence            56899999999999999999888899999999999999999999999985 59999999865321    15799999972


Q ss_pred             -------c----------------------ccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeE
Q 026122          155 -------V----------------------AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQ  203 (243)
Q Consensus       155 -------~----------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~  203 (243)
                             .                      ..+..+++.+.+.|+|||++++..+..+ +.   +.+.+...|+....
T Consensus       198 Py~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~-~~---v~~~~~~~~~~~~~  271 (284)
T TIGR03533       198 PYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM-EA---LEEAYPDVPFTWLE  271 (284)
T ss_pred             CCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH-HH---HHHHHHhCCCceee
Confidence                   0                      1136788899999999999999888644 33   44555678876643

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.69  E-value=8.8e-16  Score=131.04  Aligned_cols=127  Identities=14%  Similarity=0.136  Sum_probs=98.6

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      +++.+|||||||+|..+..++... +++|+|+|+|+.+++.++++...  ..++++.++|+.+.+..+   ++||+|+++
T Consensus        51 ~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~--~~~i~~~~~D~~~~~~~~---~~FD~V~s~  124 (263)
T PTZ00098         51 NENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSD--KNKIEFEANDILKKDFPE---NTFDMIYSR  124 (263)
T ss_pred             CCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCc--CCceEEEECCcccCCCCC---CCeEEEEEh
Confidence            458899999999999988888664 67999999999999999887653  246999999998765432   689999995


Q ss_pred             C----c--ccHHHHHHHHccCcccCeEEEEEeCC-----CcHH--------------HHHHHHHHHHHhCCeeeEEEE
Q 026122          154 A----V--AEMRILAEYCLPLVRVGGLFVAAKGH-----DPQE--------------EVKNSERAVQLMGASLLQLCS  206 (243)
Q Consensus       154 ~----~--~~~~~~l~~~~~~LkpgG~l~~~~~~-----~~~~--------------~~~~~~~~l~~~g~~~~~~~~  206 (243)
                      .    .  .+...+++++.++|||||.+++....     ....              ...++.+.++.+||..+..+.
T Consensus       125 ~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~d  202 (263)
T PTZ00098        125 DAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKRKYTLIPIQEYGDLIKSCNFQNVVAKD  202 (263)
T ss_pred             hhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCeeeEEe
Confidence            3    1  26789999999999999999986521     1111              124566778899998877654

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.68  E-value=6e-15  Score=123.29  Aligned_cols=101  Identities=22%  Similarity=0.225  Sum_probs=85.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEEEc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      +.+|||+|||+|..+..++...+ ..+++++|+++.+++.++++....+.. +++++.+|+.+.+..   .++||+|+++
T Consensus        52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~D~I~~~  128 (239)
T PRK00216         52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFP---DNSFDAVTIA  128 (239)
T ss_pred             CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCC---CCCccEEEEe
Confidence            67999999999999999988776 689999999999999999988776553 589999999886543   2689999975


Q ss_pred             C----cccHHHHHHHHccCcccCeEEEEEe
Q 026122          154 A----VAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       154 ~----~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      .    ..+...+++.+.+.|+|||.+++..
T Consensus       129 ~~l~~~~~~~~~l~~~~~~L~~gG~li~~~  158 (239)
T PRK00216        129 FGLRNVPDIDKALREMYRVLKPGGRLVILE  158 (239)
T ss_pred             cccccCCCHHHHHHHHHHhccCCcEEEEEE
Confidence            3    4578999999999999999988754

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.68  E-value=5.2e-16  Score=133.61  Aligned_cols=123  Identities=20%  Similarity=0.278  Sum_probs=90.3

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccccccCCcCCCCceEEE
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      ..++.+|||+|||||.+++..++. +..+|+|+|+++.+++.+++|++.|++.+ +.+  ....+..     ..+||+|+
T Consensus       159 ~~~g~~vLDvG~GSGILaiaA~kl-GA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v--~~~~~~~-----~~~~dlvv  230 (295)
T PF06325_consen  159 VKPGKRVLDVGCGSGILAIAAAKL-GAKKVVAIDIDPLAVEAARENAELNGVEDRIEV--SLSEDLV-----EGKFDLVV  230 (295)
T ss_dssp             SSTTSEEEEES-TTSHHHHHHHHT-TBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEE--SCTSCTC-----CS-EEEEE
T ss_pred             ccCCCEEEEeCCcHHHHHHHHHHc-CCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEE--EEecccc-----cccCCEEE
Confidence            456889999999999999777755 56799999999999999999999999975 433  2222222     26899999


Q ss_pred             EcCcc-cHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEE
Q 026122          152 ARAVA-EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCS  206 (243)
Q Consensus       152 ~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~  206 (243)
                      +|-.. .+..+...+.++|+|||.+++ +|- ..++..++.+.+++ ||.+.+...
T Consensus       231 ANI~~~vL~~l~~~~~~~l~~~G~lIl-SGI-l~~~~~~v~~a~~~-g~~~~~~~~  283 (295)
T PF06325_consen  231 ANILADVLLELAPDIASLLKPGGYLIL-SGI-LEEQEDEVIEAYKQ-GFELVEERE  283 (295)
T ss_dssp             EES-HHHHHHHHHHCHHHEEEEEEEEE-EEE-EGGGHHHHHHHHHT-TEEEEEEEE
T ss_pred             ECCCHHHHHHHHHHHHHhhCCCCEEEE-ccc-cHHHHHHHHHHHHC-CCEEEEEEE
Confidence            99765 467788888999999999777 432 23344566677766 998776543

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.68  E-value=6.7e-16  Score=131.01  Aligned_cols=100  Identities=17%  Similarity=0.221  Sum_probs=90.4

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEE
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      +++|.+|||||||.|.+++.+|+.+ +.+|+|+++|+++.+.+++.++..|+. +++++-.|..++.      ++||-|+
T Consensus        70 L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~------e~fDrIv  142 (283)
T COG2230          70 LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE------EPFDRIV  142 (283)
T ss_pred             CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc------cccceee
Confidence            4569999999999999999999988 799999999999999999999999997 7999999999975      5699999


Q ss_pred             EcC------cccHHHHHHHHccCcccCeEEEEEe
Q 026122          152 ARA------VAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       152 ~~~------~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      |-+      ..++..+++.+.+.|+|||.+++..
T Consensus       143 SvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~  176 (283)
T COG2230         143 SVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHS  176 (283)
T ss_pred             ehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEE
Confidence            964      3469999999999999999988654

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.67  E-value=3.6e-15  Score=137.34  Aligned_cols=128  Identities=16%  Similarity=0.160  Sum_probs=99.4

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      +++.+|||||||+|..++.++... +++|+|+|+|+.+++.|+++....+ .++++.++|+.+.+...   ++||+|++.
T Consensus       265 ~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~-~~v~~~~~d~~~~~~~~---~~fD~I~s~  339 (475)
T PLN02336        265 KPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRK-CSVEFEVADCTKKTYPD---NSFDVIYSR  339 (475)
T ss_pred             CCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCC-CceEEEEcCcccCCCCC---CCEEEEEEC
Confidence            347899999999999998888765 6799999999999999988775333 25899999998865432   689999997


Q ss_pred             C----cccHHHHHHHHccCcccCeEEEEEeCC----CcH--------------HHHHHHHHHHHHhCCeeeEEEE
Q 026122          154 A----VAEMRILAEYCLPLVRVGGLFVAAKGH----DPQ--------------EEVKNSERAVQLMGASLLQLCS  206 (243)
Q Consensus       154 ~----~~~~~~~l~~~~~~LkpgG~l~~~~~~----~~~--------------~~~~~~~~~l~~~g~~~~~~~~  206 (243)
                      .    ..+...+++++.++|||||.+++....    ...              ....++.+.++++||..+..+.
T Consensus       340 ~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~~i~~~d  414 (475)
T PLN02336        340 DTILHIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDDVIAED  414 (475)
T ss_pred             CcccccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeeeeeec
Confidence            5    447899999999999999999876421    111              1234566778899998776543

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.66  E-value=1.1e-15  Score=123.57  Aligned_cols=96  Identities=20%  Similarity=0.187  Sum_probs=80.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~-  154 (243)
                      ++++||+|||.|+.++.||..  +..|+++|.|+.+++.+++.+++.+++ ++..+.|+.+....    +.||+|++.. 
T Consensus        31 ~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~-i~~~~~Dl~~~~~~----~~yD~I~st~v  103 (192)
T PF03848_consen   31 PGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLD-IRTRVADLNDFDFP----EEYDFIVSTVV  103 (192)
T ss_dssp             SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-T-EEEEE-BGCCBS-T----TTEEEEEEESS
T ss_pred             CCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCce-eEEEEecchhcccc----CCcCEEEEEEE
Confidence            679999999999999999976  789999999999999999999988886 99999999887653    6899999853 


Q ss_pred             -----cccHHHHHHHHccCcccCeEEEEE
Q 026122          155 -----VAEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       155 -----~~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                           ......+++.+.+.++|||++++.
T Consensus       104 ~~fL~~~~~~~i~~~m~~~~~pGG~~li~  132 (192)
T PF03848_consen  104 FMFLQRELRPQIIENMKAATKPGGYNLIV  132 (192)
T ss_dssp             GGGS-GGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred             eccCCHHHHHHHHHHHHhhcCCcEEEEEE
Confidence                 235688999999999999998874

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.66  E-value=1e-15  Score=130.08  Aligned_cols=93  Identities=22%  Similarity=0.206  Sum_probs=80.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~-  154 (243)
                      +.+|||||||+|.++..++...|+++|+|+|+|+.|++.+++.       +++++++|++++..    .++||+|+++. 
T Consensus        30 ~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~----~~~fD~v~~~~~   98 (255)
T PRK14103         30 ARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-------GVDARTGDVRDWKP----KPDTDVVVSNAA   98 (255)
T ss_pred             CCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-------CCcEEEcChhhCCC----CCCceEEEEehh
Confidence            7899999999999999999888889999999999999988652       47899999987642    26899999976 


Q ss_pred             ---cccHHHHHHHHccCcccCeEEEEEe
Q 026122          155 ---VAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       155 ---~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                         +.+...+++++.+.|||||.+++..
T Consensus        99 l~~~~d~~~~l~~~~~~LkpgG~l~~~~  126 (255)
T PRK14103         99 LQWVPEHADLLVRWVDELAPGSWIAVQV  126 (255)
T ss_pred             hhhCCCHHHHHHHHHHhCCCCcEEEEEc
Confidence               4578999999999999999998753

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.66  E-value=2.2e-15  Score=127.51  Aligned_cols=99  Identities=14%  Similarity=0.196  Sum_probs=84.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIA--CPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~--~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      +.+|||||||+|..+..+++.  .|+++|+|+|+|+.|++.++++.+..+.. +++++++|+.+++.     ..+|+|++
T Consensus        57 ~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~-----~~~D~vv~  131 (247)
T PRK15451         57 GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI-----ENASMVVL  131 (247)
T ss_pred             CCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC-----CCCCEEeh
Confidence            789999999999998888873  57899999999999999999999888765 59999999988754     45899998


Q ss_pred             cCc------ccHHHHHHHHccCcccCeEEEEEe
Q 026122          153 RAV------AEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       153 ~~~------~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      +..      .....+++++.+.|||||.+++..
T Consensus       132 ~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e  164 (247)
T PRK15451        132 NFTLQFLEPSERQALLDKIYQGLNPGGALVLSE  164 (247)
T ss_pred             hhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            631      235789999999999999998865

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.66  E-value=2.7e-15  Score=130.65  Aligned_cols=119  Identities=18%  Similarity=0.224  Sum_probs=95.9

Q ss_pred             CeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122           77 LKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVARA-  154 (243)
Q Consensus        77 ~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~~~~-  154 (243)
                      .+|||+|||+|.+++.++...|+.+|+++|+|+.+++.|++|++.+++. +++++++|+.+...    .++||+|++|. 
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~----~~~fDlIvsNPP  210 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALP----GRRYDLIVSNPP  210 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCC----CCCccEEEECCC
Confidence            6899999999999999999888899999999999999999999999985 59999999865322    15799999972 


Q ss_pred             ------c----------------------ccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeE
Q 026122          155 ------V----------------------AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQ  203 (243)
Q Consensus       155 ------~----------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~  203 (243)
                            .                      ..+..+++.+.+.|+|||.+++..+..+ .+   +.+.+...++....
T Consensus       211 yi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~~-~~---~~~~~~~~~~~~~~  283 (307)
T PRK11805        211 YVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNSR-VH---LEEAYPDVPFTWLE  283 (307)
T ss_pred             CCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcCH-HH---HHHHHhhCCCEEEE
Confidence                  0                      1146788999999999999999888653 23   34445567765543

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.65  E-value=5.1e-15  Score=125.49  Aligned_cols=120  Identities=22%  Similarity=0.219  Sum_probs=91.7

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEE
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      ..++.+|||+|||+|.+++.+++. +..+|+|+|+|+.+++.++++.+.+++. ++.+..++           .+||+|+
T Consensus       117 ~~~~~~VLDiGcGsG~l~i~~~~~-g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~-----------~~fD~Vv  184 (250)
T PRK00517        117 VLPGKTVLDVGCGSGILAIAAAKL-GAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD-----------LKADVIV  184 (250)
T ss_pred             cCCCCEEEEeCCcHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC-----------CCcCEEE
Confidence            346889999999999998876654 3457999999999999999999988873 24332221           2699999


Q ss_pred             EcCcc-cHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEE
Q 026122          152 ARAVA-EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCS  206 (243)
Q Consensus       152 ~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~  206 (243)
                      ++... .+..+++.+.+.|||||.+++..-.  ..+..++.+.+++.||.+.....
T Consensus       185 ani~~~~~~~l~~~~~~~LkpgG~lilsgi~--~~~~~~v~~~l~~~Gf~~~~~~~  238 (250)
T PRK00517        185 ANILANPLLELAPDLARLLKPGGRLILSGIL--EEQADEVLEAYEEAGFTLDEVLE  238 (250)
T ss_pred             EcCcHHHHHHHHHHHHHhcCCCcEEEEEECc--HhhHHHHHHHHHHCCCEEEEEEE
Confidence            98654 4678889999999999998885321  23455667778899998876543

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.65  E-value=4.6e-16  Score=129.04  Aligned_cols=96  Identities=20%  Similarity=0.287  Sum_probs=80.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC------CEEEEEccccccccCCcCCCCceE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL------NVQIVRGRAETLGKDVSFREQYDV  149 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~------~v~~~~~d~~~~~~~~~~~~~fD~  149 (243)
                      |.+|||+|||+|.++..||+.  +++|+|||+++++++.|++........      .+++.+.+.++..      ++||+
T Consensus        90 g~~ilDvGCGgGLLSepLArl--ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~------~~fDa  161 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARL--GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT------GKFDA  161 (282)
T ss_pred             CceEEEeccCccccchhhHhh--CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc------cccce
Confidence            678999999999999999977  589999999999999999995444331      2556667777653      56999


Q ss_pred             EEEcC----cccHHHHHHHHccCcccCeEEEEEe
Q 026122          150 AVARA----VAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       150 I~~~~----~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      |+|..    +.++.++++.+.++|||||.+++..
T Consensus       162 VvcsevleHV~dp~~~l~~l~~~lkP~G~lfitt  195 (282)
T KOG1270|consen  162 VVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITT  195 (282)
T ss_pred             eeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeee
Confidence            99975    5689999999999999999999864

>PRK14967 putative methyltransferase; Provisional

Probab=99.65  E-value=5.4e-15  Score=123.20  Aligned_cols=128  Identities=17%  Similarity=0.176  Sum_probs=98.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      ++.+|||+|||+|.+++.++.. +..+|+++|+|+.+++.++++++.++. +++++++|+.+...    .++||+|+++.
T Consensus        36 ~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~-~~~~~~~d~~~~~~----~~~fD~Vi~np  109 (223)
T PRK14967         36 PGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGV-DVDVRRGDWARAVE----FRPFDVVVSNP  109 (223)
T ss_pred             CCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCC-eeEEEECchhhhcc----CCCeeEEEECC
Confidence            3789999999999999888865 345999999999999999999998887 48899999876422    26899999973


Q ss_pred             c--c-----------------------cHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEEEec
Q 026122          155 V--A-----------------------EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVES  209 (243)
Q Consensus       155 ~--~-----------------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~  209 (243)
                      .  .                       .+..+++.+.++|||||++++......  ...++.+.++..|+..........
T Consensus       110 Py~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~--~~~~~~~~l~~~g~~~~~~~~~~~  187 (223)
T PRK14967        110 PYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELS--GVERTLTRLSEAGLDAEVVASQWI  187 (223)
T ss_pred             CCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEeccc--CHHHHHHHHHHCCCCeEEEEeecc
Confidence            1  0                       146788899999999999998765432  234556667788887666554443


Q ss_pred             C
Q 026122          210 Q  210 (243)
Q Consensus       210 ~  210 (243)
                      +
T Consensus       188 ~  188 (223)
T PRK14967        188 P  188 (223)
T ss_pred             C
Confidence            3

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.64  E-value=6.3e-16  Score=133.57  Aligned_cols=96  Identities=20%  Similarity=0.261  Sum_probs=82.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  155 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~  155 (243)
                      +++|||+|||+|..++.++..  +.+|+|+|+|+.+++.++++++..++ ++++...|+.+...    +++||+|+++.+
T Consensus       121 ~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l-~v~~~~~D~~~~~~----~~~fD~I~~~~v  193 (287)
T PRK12335        121 PGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENL-NIRTGLYDINSASI----QEEYDFILSTVV  193 (287)
T ss_pred             CCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEechhcccc----cCCccEEEEcch
Confidence            569999999999999998864  58999999999999999999998888 68999989877543    278999999753


Q ss_pred             ------ccHHHHHHHHccCcccCeEEEEE
Q 026122          156 ------AEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       156 ------~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                            .....+++.+.++|+|||++++.
T Consensus       194 l~~l~~~~~~~~l~~~~~~LkpgG~~l~v  222 (287)
T PRK12335        194 LMFLNRERIPAIIKNMQEHTNPGGYNLIV  222 (287)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence                  25788999999999999996654

>PLN03075 nicotianamine synthase; Provisional

Probab=99.64  E-value=8.4e-15  Score=125.60  Aligned_cols=146  Identities=16%  Similarity=0.108  Sum_probs=104.7

Q ss_pred             CCCeEEEEcCCCChH-HHHH-HHHCCCCEEEEEeCCHHHHHHHHHHHHH-cCCCC-EEEEEccccccccCCcCCCCceEE
Q 026122           75 SNLKLVDVGTGAGLP-GLVL-AIACPDWKVTLLESMNKRCVFLEHAVSL-TQLLN-VQIVRGRAETLGKDVSFREQYDVA  150 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~-~~~l-a~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~~~~-v~~~~~d~~~~~~~~~~~~~fD~I  150 (243)
                      ++.+|+|||||.|-+ ++.+ +...|+.+++++|+|+++++.|++.+++ .++.+ ++|..+|+.+....   .++||+|
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~---l~~FDlV  199 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTES---LKEYDVV  199 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccc---cCCcCEE
Confidence            478999999998844 3333 3457899999999999999999999965 77754 99999999886422   2679999


Q ss_pred             EEcCc-----ccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEEEecCCCCCceEEEEEEeeC
Q 026122          151 VARAV-----AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSR  225 (243)
Q Consensus       151 ~~~~~-----~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~v~~~k~~  225 (243)
                      ++++.     .+..++++.+.+.|+|||.+++-.+.....-+-..-+-....||+...+   ..|..+--..+|+++|..
T Consensus       200 F~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~LYp~v~~~~~~gf~~~~~---~~P~~~v~Nsvi~~r~~~  276 (296)
T PLN03075        200 FLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRSAHGARAFLYPVVDPCDLRGFEVLSV---FHPTDEVINSVIIARKPG  276 (296)
T ss_pred             EEecccccccccHHHHHHHHHHhcCCCcEEEEecccchHhhcCCCCChhhCCCeEEEEE---ECCCCCceeeEEEEEeec
Confidence            99863     5789999999999999999988664221111100000011227765543   336666678888888865


Q ss_pred             C
Q 026122          226 R  226 (243)
Q Consensus       226 ~  226 (243)
                      .
T Consensus       277 ~  277 (296)
T PLN03075        277 G  277 (296)
T ss_pred             C
Confidence            3

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.64  E-value=2.1e-14  Score=118.79  Aligned_cols=99  Identities=22%  Similarity=0.306  Sum_probs=83.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPD-WKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      +.+|||+|||+|..+..++...+. .+++++|+++.+++.++++..  ...+++++.+|+.+.+..   .++||+|+++.
T Consensus        40 ~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~~~---~~~~D~i~~~~  114 (223)
T TIGR01934        40 GQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEALPFE---DNSFDAVTIAF  114 (223)
T ss_pred             CCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcCCCC---CCcEEEEEEee
Confidence            789999999999999888888765 799999999999999888765  234589999999887643   26899999853


Q ss_pred             ----cccHHHHHHHHccCcccCeEEEEEe
Q 026122          155 ----VAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       155 ----~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                          ..++..+++.+.+.|+|||++++..
T Consensus       115 ~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  143 (223)
T TIGR01934       115 GLRNVTDIQKALREMYRVLKPGGRLVILE  143 (223)
T ss_pred             eeCCcccHHHHHHHHHHHcCCCcEEEEEE
Confidence                4578899999999999999998754

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.64  E-value=2.4e-15  Score=122.90  Aligned_cols=96  Identities=18%  Similarity=0.210  Sum_probs=80.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  155 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~  155 (243)
                      +.+|||+|||+|..++.+++.  +.+|+|+|+|+.+++.+++.++..+++ +++...|+.....    +++||+|+++..
T Consensus        31 ~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~-v~~~~~d~~~~~~----~~~fD~I~~~~~  103 (195)
T TIGR00477        31 PCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLP-LRTDAYDINAAAL----NEDYDFIFSTVV  103 (195)
T ss_pred             CCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCC-ceeEeccchhccc----cCCCCEEEEecc
Confidence            679999999999999999864  579999999999999999998887775 7788888765443    267999998642


Q ss_pred             ------ccHHHHHHHHccCcccCeEEEEE
Q 026122          156 ------AEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       156 ------~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                            .+...+++.+.++|+|||++++.
T Consensus       104 ~~~~~~~~~~~~l~~~~~~LkpgG~lli~  132 (195)
T TIGR00477       104 FMFLQAGRVPEIIANMQAHTRPGGYNLIV  132 (195)
T ss_pred             cccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence                  24678999999999999996654

Part of a tellurite-reducing operon tehA and tehB

>TIGR00740 methyltransferase, putative

Probab=99.64  E-value=5.6e-15  Score=124.32  Aligned_cols=99  Identities=11%  Similarity=0.136  Sum_probs=84.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCEEEEEccccccccCCcCCCCceEEEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIA--CPDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~--~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      +.+|||+|||+|..+..+++.  .|+++|+|+|+|+.|++.|+++++..+. .+++++++|+.+++.     ..+|+|++
T Consensus        54 ~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----~~~d~v~~  128 (239)
T TIGR00740        54 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI-----KNASMVIL  128 (239)
T ss_pred             CCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC-----CCCCEEee
Confidence            779999999999998888876  3689999999999999999999887664 369999999998764     45899888


Q ss_pred             cCc------ccHHHHHHHHccCcccCeEEEEEe
Q 026122          153 RAV------AEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       153 ~~~------~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      +..      .+...+++++.+.|+|||.+++..
T Consensus       129 ~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d  161 (239)
T TIGR00740       129 NFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSE  161 (239)
T ss_pred             ecchhhCCHHHHHHHHHHHHHhcCCCeEEEEee
Confidence            642      245789999999999999999875

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.63  E-value=2.9e-15  Score=124.16  Aligned_cols=103  Identities=23%  Similarity=0.301  Sum_probs=84.9

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEE
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      +++.+|||||||+|..+..++...+ ..+|+++|+++++++.|+++++++++.+++++++|..+....   ..+||+|++
T Consensus        76 ~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~---~~~fD~Ii~  152 (215)
T TIGR00080        76 KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEP---LAPYDRIYV  152 (215)
T ss_pred             CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcc---cCCCCEEEE
Confidence            4588999999999999999998754 468999999999999999999999998899999999775432   258999998


Q ss_pred             cCcccHHHHHHHHccCcccCeEEEEEeCC
Q 026122          153 RAVAEMRILAEYCLPLVRVGGLFVAAKGH  181 (243)
Q Consensus       153 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  181 (243)
                      ....  ..+.+.+.+.|+|||++++..+.
T Consensus       153 ~~~~--~~~~~~~~~~L~~gG~lv~~~~~  179 (215)
T TIGR00080       153 TAAG--PKIPEALIDQLKEGGILVMPVGE  179 (215)
T ss_pred             cCCc--ccccHHHHHhcCcCcEEEEEEcC
Confidence            7522  33446677899999999986553

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.63  E-value=4.1e-15  Score=123.04  Aligned_cols=104  Identities=19%  Similarity=0.281  Sum_probs=84.9

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEE
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      ++++.+|||||||+|..+..+++.. ++++|+++|+++++++.++++++..+..+++++++|..+....   ..+||+|+
T Consensus        74 ~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~---~~~fD~I~  150 (212)
T PRK13942         74 LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEE---NAPYDRIY  150 (212)
T ss_pred             CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCc---CCCcCEEE
Confidence            4568999999999999998888764 3479999999999999999999999988899999998765432   26899999


Q ss_pred             EcCcccHHHHHHHHccCcccCeEEEEEeCC
Q 026122          152 ARAVAEMRILAEYCLPLVRVGGLFVAAKGH  181 (243)
Q Consensus       152 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  181 (243)
                      +.+..  ..+.+.+.+.|||||++++..+.
T Consensus       151 ~~~~~--~~~~~~l~~~LkpgG~lvi~~~~  178 (212)
T PRK13942        151 VTAAG--PDIPKPLIEQLKDGGIMVIPVGS  178 (212)
T ss_pred             ECCCc--ccchHHHHHhhCCCcEEEEEEcC
Confidence            87532  23345667789999999987653

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.63  E-value=5.5e-15  Score=125.61  Aligned_cols=96  Identities=19%  Similarity=0.221  Sum_probs=82.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      ++.+|||||||+|..+..++...++.+|+|+|+|+.+++.++++.     .+++++.+|+.++..    .++||+|+++.
T Consensus        31 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~-----~~~~~~~~d~~~~~~----~~~fD~v~~~~  101 (258)
T PRK01683         31 NPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL-----PDCQFVEADIASWQP----PQALDLIFANA  101 (258)
T ss_pred             CCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC-----CCCeEEECchhccCC----CCCccEEEEcc
Confidence            378999999999999999998888899999999999999988763     468899999987643    26899999975


Q ss_pred             ----cccHHHHHHHHccCcccCeEEEEEe
Q 026122          155 ----VAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       155 ----~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                          +.+...+++.+.+.|||||.+++..
T Consensus       102 ~l~~~~d~~~~l~~~~~~LkpgG~~~~~~  130 (258)
T PRK01683        102 SLQWLPDHLELFPRLVSLLAPGGVLAVQM  130 (258)
T ss_pred             ChhhCCCHHHHHHHHHHhcCCCcEEEEEC
Confidence                3477899999999999999988864

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.63  E-value=8.1e-15  Score=124.23  Aligned_cols=123  Identities=16%  Similarity=0.124  Sum_probs=96.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  155 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~  155 (243)
                      +.+|||+|||+|.+++.++...++.+|+|+|+|+.+++.+++|++.++   ++++++|+.+.... ...++||+|++|..
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~---~~~~~~D~~~~l~~-~~~~~fDlVv~NPP  162 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG---GTVHEGDLYDALPT-ALRGRVDILAANAP  162 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---CEEEEeechhhcch-hcCCCEeEEEECCC
Confidence            458999999999999999988888899999999999999999998776   47889998764321 11257999999730


Q ss_pred             --c----------------------------cHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEE
Q 026122          156 --A----------------------------EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLC  205 (243)
Q Consensus       156 --~----------------------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~  205 (243)
                        .                            -+..+++.+.++|+|||++++..+..+..+   +...+++.|+......
T Consensus       163 y~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~---v~~~l~~~g~~~~~~~  239 (251)
T TIGR03704       163 YVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPL---AVEAFARAGLIARVAS  239 (251)
T ss_pred             CCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHH---HHHHHHHCCCCceeeE
Confidence              0                            145788888999999999999988765544   4556678898765543

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PRK14968 putative methyltransferase; Provisional

Probab=99.63  E-value=2.6e-14  Score=115.34  Aligned_cols=123  Identities=15%  Similarity=0.175  Sum_probs=97.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC--EEEEEccccccccCCcCCCCceEEEEc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN--VQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~--v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      +.+|||+|||+|..+..++..  +.+|+++|+|+++++.++++++.+++.+  +.++++|+.+...    ..+||+|+++
T Consensus        24 ~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~d~vi~n   97 (188)
T PRK14968         24 GDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFR----GDKFDVILFN   97 (188)
T ss_pred             CCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccccc----ccCceEEEEC
Confidence            779999999999999888876  5899999999999999999999888765  8899998866322    2479999986


Q ss_pred             Cc-------------------------ccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEE
Q 026122          154 AV-------------------------AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCS  206 (243)
Q Consensus       154 ~~-------------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~  206 (243)
                      ..                         ..+..+++.+.++|+|||.+++..+...  ....+.+.+++.||.+..+..
T Consensus        98 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~--~~~~l~~~~~~~g~~~~~~~~  173 (188)
T PRK14968         98 PPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLT--GEDEVLEYLEKLGFEAEVVAE  173 (188)
T ss_pred             CCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccC--CHHHHHHHHHHCCCeeeeeee
Confidence            31                         1146689999999999999888765432  224456777799998776654

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.62  E-value=1e-14  Score=126.01  Aligned_cols=123  Identities=18%  Similarity=0.148  Sum_probs=93.1

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccccccCCcCCCCceEEE
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      ..++.+|||+|||+|.+++.+++. +..+|+|+|+|+.+++.++++++.+++.+ +.+..++.....     .++||+|+
T Consensus       157 ~~~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~-----~~~fDlVv  230 (288)
T TIGR00406       157 DLKDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPI-----EGKADVIV  230 (288)
T ss_pred             cCCCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccccc-----CCCceEEE
Confidence            346789999999999999887754 45699999999999999999999988864 667766643321     26899999


Q ss_pred             EcCcc-cHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEE
Q 026122          152 ARAVA-EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQL  204 (243)
Q Consensus       152 ~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~  204 (243)
                      ++... .+..++..+.+.|||||.+++..-  ...+..++.+.++.. |.+.+.
T Consensus       231 an~~~~~l~~ll~~~~~~LkpgG~li~sgi--~~~~~~~v~~~~~~~-f~~~~~  281 (288)
T TIGR00406       231 ANILAEVIKELYPQFSRLVKPGGWLILSGI--LETQAQSVCDAYEQG-FTVVEI  281 (288)
T ss_pred             EecCHHHHHHHHHHHHHHcCCCcEEEEEeC--cHhHHHHHHHHHHcc-CceeeE
Confidence            98754 456888999999999999877432  233445566666665 766554

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.62  E-value=9.5e-15  Score=120.25  Aligned_cols=103  Identities=19%  Similarity=0.307  Sum_probs=83.8

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEE
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      +++.+|||+|||+|..+..++...+ .++|+++|+++++++.++++++.+++. +++++++|..+....   ..+||+|+
T Consensus        71 ~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~---~~~fD~Ii  147 (205)
T PRK13944         71 RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK---HAPFDAII  147 (205)
T ss_pred             CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc---CCCccEEE
Confidence            4478999999999999988887653 579999999999999999999998875 499999999875432   26899999


Q ss_pred             EcCcccHHHHHHHHccCcccCeEEEEEeCC
Q 026122          152 ARAVAEMRILAEYCLPLVRVGGLFVAAKGH  181 (243)
Q Consensus       152 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  181 (243)
                      +....  ..+.+.+.+.|+|||++++..+.
T Consensus       148 ~~~~~--~~~~~~l~~~L~~gG~lvi~~~~  175 (205)
T PRK13944        148 VTAAA--STIPSALVRQLKDGGVLVIPVEE  175 (205)
T ss_pred             EccCc--chhhHHHHHhcCcCcEEEEEEcC
Confidence            97543  23446778899999999886543

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.62  E-value=5.9e-15  Score=131.23  Aligned_cols=102  Identities=14%  Similarity=0.142  Sum_probs=85.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC---CEEEEEccccccccCCcCCCCceEEEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL---NVQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~---~v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      +.+|||+|||+|.+++.+++.+|+.+|+++|.|+.+++.+++|++.++..   +++++.+|..+...    .++||+|+|
T Consensus       229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~----~~~fDlIls  304 (378)
T PRK15001        229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE----PFRFNAVLC  304 (378)
T ss_pred             CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCC----CCCEEEEEE
Confidence            46899999999999999999999999999999999999999999888643   58899888765321    257999999


Q ss_pred             cCc---------ccHHHHHHHHccCcccCeEEEEEeCC
Q 026122          153 RAV---------AEMRILAEYCLPLVRVGGLFVAAKGH  181 (243)
Q Consensus       153 ~~~---------~~~~~~l~~~~~~LkpgG~l~~~~~~  181 (243)
                      |..         .....+++.+.++|+|||.++++...
T Consensus       305 NPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr  342 (378)
T PRK15001        305 NPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANR  342 (378)
T ss_pred             CcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEec
Confidence            731         12467899999999999999998643

>PRK05785 hypothetical protein; Provisional

Probab=99.61  E-value=2.8e-14  Score=119.20  Aligned_cols=105  Identities=15%  Similarity=0.128  Sum_probs=81.9

Q ss_pred             hHHHHHHhHhhhcccCCCcccccCccCCCCCCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc
Q 026122           43 VNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT  122 (243)
Q Consensus        43 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~  122 (243)
                      .+..|++.++..+...              ..++.+|||+|||||.++..++... +.+|+|+|+|++|++.+++.    
T Consensus        33 ~~~~wr~~~~~~l~~~--------------~~~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~----   93 (226)
T PRK05785         33 QDVRWRAELVKTILKY--------------CGRPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA----   93 (226)
T ss_pred             CcHHHHHHHHHHHHHh--------------cCCCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc----
Confidence            3467777776644321              0126799999999999998888775 57999999999999988753    


Q ss_pred             CCCCEEEEEccccccccCCcCCCCceEEEEcC----cccHHHHHHHHccCcccCe
Q 026122          123 QLLNVQIVRGRAETLGKDVSFREQYDVAVARA----VAEMRILAEYCLPLVRVGG  173 (243)
Q Consensus       123 ~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~----~~~~~~~l~~~~~~LkpgG  173 (243)
                          ..++++|+++++..+   ++||+|++..    ..+++.+++++.++|||.+
T Consensus        94 ----~~~~~~d~~~lp~~d---~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~~  141 (226)
T PRK05785         94 ----DDKVVGSFEALPFRD---KSFDVVMSSFALHASDNIEKVIAEFTRVSRKQV  141 (226)
T ss_pred             ----cceEEechhhCCCCC---CCEEEEEecChhhccCCHHHHHHHHHHHhcCce
Confidence                135788998887653   7899999864    5688999999999999953

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.61  E-value=2.2e-15  Score=110.06  Aligned_cols=91  Identities=23%  Similarity=0.295  Sum_probs=74.5

Q ss_pred             EEEEcCCCChHHHHHHHHC---CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc-C
Q 026122           79 LVDVGTGAGLPGLVLAIAC---PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR-A  154 (243)
Q Consensus        79 VLDiGcG~G~~~~~la~~~---~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~-~  154 (243)
                      |||+|||+|..+..++...   +..+++|+|+|++|++.+++.....+. +++++++|+.+++..   .++||+|++. .
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~-~~~~~~~D~~~l~~~---~~~~D~v~~~~~   76 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP-KVRFVQADARDLPFS---DGKFDLVVCSGL   76 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT-TSEEEESCTTCHHHH---SSSEEEEEE-TT
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC-ceEEEECCHhHCccc---CCCeeEEEEcCC
Confidence            7999999999999999875   347999999999999999999888666 699999999998654   2689999994 3


Q ss_pred             ------cccHHHHHHHHccCcccCe
Q 026122          155 ------VAEMRILAEYCLPLVRVGG  173 (243)
Q Consensus       155 ------~~~~~~~l~~~~~~LkpgG  173 (243)
                            ......+++.+.++|+|||
T Consensus        77 ~~~~~~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   77 SLHHLSPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             GGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred             ccCCCCHHHHHHHHHHHHHHhCCCC
Confidence                  1257999999999999998

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.61  E-value=8.9e-15  Score=124.58  Aligned_cols=100  Identities=19%  Similarity=0.257  Sum_probs=86.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~-  154 (243)
                      +.+|||+|||.|.+++.+++..|..+++.+|+|..+++.+++|+..+++++.++..+|..+-.     .++||.|+||. 
T Consensus       159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v-----~~kfd~IisNPP  233 (300)
T COG2813         159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPV-----EGKFDLIISNPP  233 (300)
T ss_pred             CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccc-----cccccEEEeCCC
Confidence            459999999999999999999999999999999999999999999999987667777776632     25899999984 


Q ss_pred             ----ccc----HHHHHHHHccCcccCeEEEEEeC
Q 026122          155 ----VAE----MRILAEYCLPLVRVGGLFVAAKG  180 (243)
Q Consensus       155 ----~~~----~~~~l~~~~~~LkpgG~l~~~~~  180 (243)
                          ...    -.++++.+.+.|++||.|.++..
T Consensus       234 fh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan  267 (300)
T COG2813         234 FHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN  267 (300)
T ss_pred             ccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence                111    35899999999999999998875

>PRK08317 hypothetical protein; Provisional

Probab=99.61  E-value=5.9e-14  Score=117.04  Aligned_cols=130  Identities=17%  Similarity=0.155  Sum_probs=99.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      ++.+|||+|||+|..+..++... +.++++|+|+|+.+++.++++... ...++++..+|+.+.+...   ++||+|+++
T Consensus        19 ~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~d~~~~~~~~---~~~D~v~~~   94 (241)
T PRK08317         19 PGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG-LGPNVEFVRGDADGLPFPD---GSFDAVRSD   94 (241)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC-CCCceEEEecccccCCCCC---CCceEEEEe
Confidence            37899999999999999998876 678999999999999999887332 2346899999998765432   689999986


Q ss_pred             C----cccHHHHHHHHccCcccCeEEEEEeCCC--------cHHH-----------------HHHHHHHHHHhCCeeeEE
Q 026122          154 A----VAEMRILAEYCLPLVRVGGLFVAAKGHD--------PQEE-----------------VKNSERAVQLMGASLLQL  204 (243)
Q Consensus       154 ~----~~~~~~~l~~~~~~LkpgG~l~~~~~~~--------~~~~-----------------~~~~~~~l~~~g~~~~~~  204 (243)
                      .    ..+...+++.+.++|+|||.+++.....        ....                 ...+.+.++.+||.....
T Consensus        95 ~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~  174 (241)
T PRK08317         95 RVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSDHFADPWLGRRLPGLFREAGLTDIEV  174 (241)
T ss_pred             chhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHcCCCceeE
Confidence            4    4578999999999999999998765210        0001                 123556778899987766


Q ss_pred             EEEe
Q 026122          205 CSVE  208 (243)
Q Consensus       205 ~~~~  208 (243)
                      ....
T Consensus       175 ~~~~  178 (241)
T PRK08317        175 EPYT  178 (241)
T ss_pred             EEEE
Confidence            5544

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.60  E-value=5.2e-15  Score=110.51  Aligned_cols=103  Identities=18%  Similarity=0.191  Sum_probs=85.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      |.+|||+|||+|..++.+++.. ..+++|+|+++.+++.++.+....++. +++++++|+.+.... ...++||+|+++.
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-~~~~~~D~Iv~np   78 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEP-LPDGKFDLIVTNP   78 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHT-CTTT-EEEEEE--
T ss_pred             CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhh-ccCceeEEEEECC
Confidence            4589999999999998888886 689999999999999999999999884 699999999887621 1137899999973


Q ss_pred             ------------cccHHHHHHHHccCcccCeEEEEEeC
Q 026122          155 ------------VAEMRILAEYCLPLVRVGGLFVAAKG  180 (243)
Q Consensus       155 ------------~~~~~~~l~~~~~~LkpgG~l~~~~~  180 (243)
                                  ......+++.+.++|+|||.++++.+
T Consensus        79 P~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~  116 (117)
T PF13659_consen   79 PYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP  116 (117)
T ss_dssp             STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence                        11357899999999999999988753

...

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.60  E-value=1.7e-14  Score=126.89  Aligned_cols=137  Identities=15%  Similarity=0.005  Sum_probs=104.6

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEE
Q 026122           72 SCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        72 ~~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      .++++.+|||+|||+|.+++.++..  +.+|+|+|+++.|++.++.|++..++.++++.++|+.+++..   .++||+|+
T Consensus       179 ~~~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~---~~~~D~Iv  253 (329)
T TIGR01177       179 RVTEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLS---SESVDAIA  253 (329)
T ss_pred             CCCCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcc---cCCCCEEE
Confidence            3456889999999999998776643  679999999999999999999999988889999999987654   26899999


Q ss_pred             EcCc-------------ccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEEEecCCCCCceEE
Q 026122          152 ARAV-------------AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTA  218 (243)
Q Consensus       152 ~~~~-------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~  218 (243)
                      ++..             .-+..+++.+.+.|+|||++++......  +   +.+.++.+|| +....... ....-.|.+
T Consensus       254 ~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~--~---~~~~~~~~g~-i~~~~~~~-~h~sl~r~i  326 (329)
T TIGR01177       254 TDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI--D---LESLAEDAFR-VVKRFEVR-VHRSLTRHI  326 (329)
T ss_pred             ECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC--C---HHHHHhhcCc-chheeeee-eecceEEEE
Confidence            9631             1158899999999999999998876432  2   2344668999 76655432 222445555


Q ss_pred             EE
Q 026122          219 VV  220 (243)
Q Consensus       219 v~  220 (243)
                      .+
T Consensus       327 ~v  328 (329)
T TIGR01177       327 YV  328 (329)
T ss_pred             Ee
Confidence            43

This family is found exclusively in the Archaea.

>PLN02672 methionine S-methyltransferase

Probab=99.60  E-value=9.9e-15  Score=143.19  Aligned_cols=161  Identities=16%  Similarity=0.133  Sum_probs=118.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCC----------------CCEEEEEcccccccc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL----------------LNVQIVRGRAETLGK  139 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~----------------~~v~~~~~d~~~~~~  139 (243)
                      +.+|||+|||+|.+++.++...+..+|+|+|+|+.+++.|++|++.+++                .+++++++|+.+...
T Consensus       119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~  198 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR  198 (1082)
T ss_pred             CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence            4689999999999999999988888999999999999999999998653                259999999987542


Q ss_pred             CCcCCCCceEEEEcC--------------cc----------------------------cHHHHHHHHccCcccCeEEEE
Q 026122          140 DVSFREQYDVAVARA--------------VA----------------------------EMRILAEYCLPLVRVGGLFVA  177 (243)
Q Consensus       140 ~~~~~~~fD~I~~~~--------------~~----------------------------~~~~~l~~~~~~LkpgG~l~~  177 (243)
                      .  ...+||+|++|-              +.                            -+..+++.+.++|+|||.+++
T Consensus       199 ~--~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~l  276 (1082)
T PLN02672        199 D--NNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIF  276 (1082)
T ss_pred             c--cCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence            1  013699999972              10                            036678888899999999999


Q ss_pred             EeCCCcHHHHH-HHHHHHHHhCCeeeEEEEEec-CCCCC-ceEEEEEEeeCCCCCCCCCCCCCCCCCCC
Q 026122          178 AKGHDPQEEVK-NSERAVQLMGASLLQLCSVES-QSPFG-QRTAVVCLKSRRTPKKYPRDPGTPAKVPL  243 (243)
Q Consensus       178 ~~~~~~~~~~~-~~~~~l~~~g~~~~~~~~~~~-~~~~~-~r~~v~~~k~~~~~~~yp~~~~~~~~~p~  243 (243)
                      ..|.++.+.+. ++.   +..||....+..... ...+. -+-+|-+.|.  +++.+-.=+|..+.-|+
T Consensus       277 EiG~~q~~~v~~~l~---~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  340 (1082)
T PLN02672        277 NMGGRPGQAVCERLF---ERRGFRITKLWQTKINQAADTDISALVEIEKN--SRHRFEFFMGLVGDQPI  340 (1082)
T ss_pred             EECccHHHHHHHHHH---HHCCCCeeEEeeehhhhccccchHHHHHHhhc--CccceeeeeccCCCCch
Confidence            99988888775 344   478988776655331 12222 3445555554  45666666666666664

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.59  E-value=4.2e-14  Score=119.73  Aligned_cols=94  Identities=17%  Similarity=0.177  Sum_probs=78.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~-  154 (243)
                      +.+|||+|||+|..+..++..  +.+|+++|+|+.+++.++++..     ...++++|+++++...   ++||+|+++. 
T Consensus        43 ~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~-----~~~~~~~d~~~~~~~~---~~fD~V~s~~~  112 (251)
T PRK10258         43 FTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDA-----ADHYLAGDIESLPLAT---ATFDLAWSNLA  112 (251)
T ss_pred             CCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCC-----CCCEEEcCcccCcCCC---CcEEEEEECch
Confidence            679999999999998777753  5799999999999998877632     2468899998876542   6899999975 


Q ss_pred             ---cccHHHHHHHHccCcccCeEEEEEe
Q 026122          155 ---VAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       155 ---~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                         ..++..++.++.++|+|||.+++..
T Consensus       113 l~~~~d~~~~l~~~~~~Lk~gG~l~~~~  140 (251)
T PRK10258        113 VQWCGNLSTALRELYRVVRPGGVVAFTT  140 (251)
T ss_pred             hhhcCCHHHHHHHHHHHcCCCeEEEEEe
Confidence               3478899999999999999999875

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.59  E-value=6.6e-16  Score=112.24  Aligned_cols=95  Identities=19%  Similarity=0.169  Sum_probs=63.9

Q ss_pred             EEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC----c
Q 026122           80 VDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA----V  155 (243)
Q Consensus        80 LDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~----~  155 (243)
                      ||||||+|..+..+...++..+++|+|+|+.|++.+++.....+..+......+..+..... ..++||+|++..    .
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~fD~V~~~~vl~~l   79 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYD-PPESFDLVVASNVLHHL   79 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CC-C----SEEEEE-TTS--
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcc-cccccceehhhhhHhhh
Confidence            79999999999999988888999999999999998988888877655555554444432221 115899999965    3


Q ss_pred             ccHHHHHHHHccCcccCeEE
Q 026122          156 AEMRILAEYCLPLVRVGGLF  175 (243)
Q Consensus       156 ~~~~~~l~~~~~~LkpgG~l  175 (243)
                      .++..+++.+.+.|+|||.|
T Consensus        80 ~~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   80 EDIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             S-HHHHHHHHTTT-TSS-EE
T ss_pred             hhHHHHHHHHHHHcCCCCCC
Confidence            57899999999999999985

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=99.58  E-value=1.2e-13  Score=115.17  Aligned_cols=105  Identities=15%  Similarity=0.216  Sum_probs=85.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEcccccc--ccCCcCCCCceEEEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETL--GKDVSFREQYDVAVA  152 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~--~~~~~~~~~fD~I~~  152 (243)
                      +..+||+|||+|.+++.++...|.+.|+|||.|+.++..|.+|++++++.+ +.+++-+.+.-  .......+++|++++
T Consensus       149 ~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvs  228 (328)
T KOG2904|consen  149 HTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVS  228 (328)
T ss_pred             cceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEec
Confidence            678999999999999999988899999999999999999999999999865 77775544331  111122478999999


Q ss_pred             cC------------------------------cccHHHHHHHHccCcccCeEEEEEeC
Q 026122          153 RA------------------------------VAEMRILAEYCLPLVRVGGLFVAAKG  180 (243)
Q Consensus       153 ~~------------------------------~~~~~~~l~~~~~~LkpgG~l~~~~~  180 (243)
                      |.                              ...+..++..+.|.|+|||.+.+..+
T Consensus       229 NPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~  286 (328)
T KOG2904|consen  229 NPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV  286 (328)
T ss_pred             CCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence            71                              11356778888999999999999886

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.57  E-value=4.7e-14  Score=125.17  Aligned_cols=104  Identities=16%  Similarity=0.109  Sum_probs=88.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  155 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~  155 (243)
                      +..+||||||+|..++.+|+..|+..++|+|+++.+++.+.+++...++.|+.++++|+..+... ..++++|.|+++-.
T Consensus       123 ~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~-~~~~s~D~I~lnFP  201 (390)
T PRK14121        123 EKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLEL-LPSNSVEKIFVHFP  201 (390)
T ss_pred             CCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhh-CCCCceeEEEEeCC
Confidence            56899999999999999999999999999999999999999999999999999999999765321 11378999998742


Q ss_pred             cc----------HHHHHHHHccCcccCeEEEEEeC
Q 026122          156 AE----------MRILAEYCLPLVRVGGLFVAAKG  180 (243)
Q Consensus       156 ~~----------~~~~l~~~~~~LkpgG~l~~~~~  180 (243)
                      .+          ...+++.+.++|+|||.+.+...
T Consensus       202 dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD  236 (390)
T PRK14121        202 VPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTD  236 (390)
T ss_pred             CCccccchhhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence            22          26899999999999999888664

>PTZ00146 fibrillarin; Provisional

Probab=99.56  E-value=4.2e-13  Score=114.84  Aligned_cols=148  Identities=15%  Similarity=0.106  Sum_probs=98.5

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEE
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      ++++.+|||+|||+|..+..+|... +..+|++||+++++.+...+.++..  .|+.++.+|+..........+++|+|+
T Consensus       130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--~NI~~I~~Da~~p~~y~~~~~~vDvV~  207 (293)
T PTZ00146        130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--PNIVPIIEDARYPQKYRMLVPMVDVIF  207 (293)
T ss_pred             cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CCCEEEECCccChhhhhcccCCCCEEE
Confidence            4568899999999999999999875 3569999999987664444443322  578899999864210000125799999


Q ss_pred             EcCc-c-cHHHHHHHHccCcccCeEEEEEeC-------CCcHHHHHHHHHHHHHhCCeeeEEEEEecCCCCCceEEEEEE
Q 026122          152 ARAV-A-EMRILAEYCLPLVRVGGLFVAAKG-------HDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCL  222 (243)
Q Consensus       152 ~~~~-~-~~~~~l~~~~~~LkpgG~l~~~~~-------~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~v~~~  222 (243)
                      +... . +...++.++.+.|||||.+++...       +...+.+.+-.+.+++.||++++...  +.....++.+|+..
T Consensus       208 ~Dva~pdq~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~~~e~v~--L~Py~~~h~~v~~~  285 (293)
T PTZ00146        208 ADVAQPDQARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKPKEQLT--LEPFERDHAVVIGV  285 (293)
T ss_pred             EeCCCcchHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCceEEEEe--cCCccCCcEEEEEE
Confidence            9652 2 334566788999999999998431       11222233334778899998776643  33334455555555


Q ss_pred             ee
Q 026122          223 KS  224 (243)
Q Consensus       223 k~  224 (243)
                      ..
T Consensus       286 ~~  287 (293)
T PTZ00146        286 YR  287 (293)
T ss_pred             Ec
Confidence            44

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.56  E-value=4e-14  Score=124.86  Aligned_cols=100  Identities=18%  Similarity=0.226  Sum_probs=85.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~-  154 (243)
                      ..+|||+|||+|.+++.+++..|+.+|+++|+|+.+++.++++++.+++. .+++.+|..+..     .++||+|++|. 
T Consensus       197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~-~~~~~~D~~~~~-----~~~fDlIvsNPP  270 (342)
T PRK09489        197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLE-GEVFASNVFSDI-----KGRFDMIISNPP  270 (342)
T ss_pred             CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEccccccc-----CCCccEEEECCC
Confidence            45899999999999999998888889999999999999999999998875 577778875521     26899999974 


Q ss_pred             --------cccHHHHHHHHccCcccCeEEEEEeCC
Q 026122          155 --------VAEMRILAEYCLPLVRVGGLFVAAKGH  181 (243)
Q Consensus       155 --------~~~~~~~l~~~~~~LkpgG~l~~~~~~  181 (243)
                              ......+++.+.++|+|||.++++...
T Consensus       271 FH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~  305 (342)
T PRK09489        271 FHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANA  305 (342)
T ss_pred             ccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence                    123588999999999999999988754

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.56  E-value=1.8e-14  Score=116.35  Aligned_cols=99  Identities=19%  Similarity=0.217  Sum_probs=86.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~-  154 (243)
                      ..+|.|+|||+|..+-.|++++|++.|+|+|.|++|++.|++.     +.+++|..+|+.++...    .+.|++++|+ 
T Consensus        31 ~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~r-----lp~~~f~~aDl~~w~p~----~~~dllfaNAv  101 (257)
T COG4106          31 PRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQR-----LPDATFEEADLRTWKPE----QPTDLLFANAV  101 (257)
T ss_pred             cceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHh-----CCCCceecccHhhcCCC----Cccchhhhhhh
Confidence            6799999999999999999999999999999999999988554     45799999999998764    6799999998 


Q ss_pred             ---cccHHHHHHHHccCcccCeEEEEEeCCCc
Q 026122          155 ---VAEMRILAEYCLPLVRVGGLFVAAKGHDP  183 (243)
Q Consensus       155 ---~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  183 (243)
                         +.+-.+++..+...|.|||.+.+-+..+.
T Consensus       102 lqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~  133 (257)
T COG4106         102 LQWLPDHPELLPRLVSQLAPGGVLAVQMPDNL  133 (257)
T ss_pred             hhhccccHHHHHHHHHhhCCCceEEEECCCcc
Confidence               45678899999999999999998775443

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=99.55  E-value=2.7e-13  Score=106.80  Aligned_cols=121  Identities=17%  Similarity=0.217  Sum_probs=96.3

Q ss_pred             CeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccccccCCcCCCCceEEEEcC-
Q 026122           77 LKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAVARA-  154 (243)
Q Consensus        77 ~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~fD~I~~~~-  154 (243)
                      .+|||+|||+|.+...|+...-....+|||.|+++++.|+..+++.+++| |+|.+.|+.+-...   .++||+|.-.+ 
T Consensus        69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~---~~qfdlvlDKGT  145 (227)
T KOG1271|consen   69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFL---SGQFDLVLDKGT  145 (227)
T ss_pred             cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCccc---ccceeEEeecCc
Confidence            49999999999998888876434569999999999999999999999987 99999999885332   37899888642 


Q ss_pred             -----------cccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeE
Q 026122          155 -----------VAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQ  203 (243)
Q Consensus       155 -----------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~  203 (243)
                                 ...+...+..+.+.|+|||++++.++..+..|+.+   .+...||....
T Consensus       146 ~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~---~f~~~~f~~~~  202 (227)
T KOG1271|consen  146 LDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVE---EFENFNFEYLS  202 (227)
T ss_pred             eeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHH---HHhcCCeEEEE
Confidence                       12345677788899999999999998888777754   34466765443

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.55  E-value=1.1e-13  Score=115.48  Aligned_cols=97  Identities=21%  Similarity=0.279  Sum_probs=82.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~-  154 (243)
                      +.+|||+|||+|..+..++...+..+++++|+++.+++.+++...    .+++++.+|+.+.+...   ++||+|+++. 
T Consensus        35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~---~~fD~vi~~~~  107 (240)
T TIGR02072        35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS----ENVQFICGDAEKLPLED---SSFDLIVSNLA  107 (240)
T ss_pred             CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC----CCCeEEecchhhCCCCC---CceeEEEEhhh
Confidence            578999999999999999988888899999999999888876543    36889999999876532   6899999975 


Q ss_pred             ---cccHHHHHHHHccCcccCeEEEEEe
Q 026122          155 ---VAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       155 ---~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                         ..+...+++.+.+.|+|||.+++..
T Consensus       108 l~~~~~~~~~l~~~~~~L~~~G~l~~~~  135 (240)
T TIGR02072       108 LQWCDDLSQALSELARVLKPGGLLAFST  135 (240)
T ss_pred             hhhccCHHHHHHHHHHHcCCCcEEEEEe
Confidence               3478899999999999999998865

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.54  E-value=1.8e-13  Score=119.30  Aligned_cols=101  Identities=14%  Similarity=0.169  Sum_probs=84.2

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEE
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      ++++.+|||||||+|..++.+++.+|+.+++++|. +.+++.++++++..++. +++++.+|+.+...     ..+|+|+
T Consensus       147 ~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~-----~~~D~v~  220 (306)
T TIGR02716       147 LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY-----PEADAVL  220 (306)
T ss_pred             CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCC-----CCCCEEE
Confidence            34578999999999999999999999999999998 78999999999999885 59999999876432     3479887


Q ss_pred             EcCc----c--cHHHHHHHHccCcccCeEEEEEe
Q 026122          152 ARAV----A--EMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       152 ~~~~----~--~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      +..+    .  ....+++++.+.|+|||++++..
T Consensus       221 ~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d  254 (306)
T TIGR02716       221 FCRILYSANEQLSTIMCKKAFDAMRSGGRLLILD  254 (306)
T ss_pred             eEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            6431    1  23578999999999999998874

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK06922 hypothetical protein; Provisional

Probab=99.54  E-value=6.5e-14  Score=130.47  Aligned_cols=104  Identities=16%  Similarity=0.221  Sum_probs=85.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      ++.+|||+|||+|..+..++...|+.+|+|+|+|+.|++.++++....+. +++++++|+.+++... .+++||+|+++.
T Consensus       418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~-~ie~I~gDa~dLp~~f-edeSFDvVVsn~  495 (677)
T PRK06922        418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGR-SWNVIKGDAINLSSSF-EKESVDTIVYSS  495 (677)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC-CeEEEEcchHhCcccc-CCCCEEEEEEch
Confidence            37899999999999988899888999999999999999999988765553 5889999998865210 126899999863


Q ss_pred             c-----------------ccHHHHHHHHccCcccCeEEEEEeC
Q 026122          155 V-----------------AEMRILAEYCLPLVRVGGLFVAAKG  180 (243)
Q Consensus       155 ~-----------------~~~~~~l~~~~~~LkpgG~l~~~~~  180 (243)
                      .                 .+...+++++.++|||||.+++..+
T Consensus       496 vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~  538 (677)
T PRK06922        496 ILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG  538 (677)
T ss_pred             HHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence            1                 2457899999999999999999764

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.53  E-value=2.3e-13  Score=116.29  Aligned_cols=113  Identities=16%  Similarity=0.193  Sum_probs=91.1

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEE
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      +++.+|||+|||+|..++.++...+ ..+|+++|+++.+++.++++++++++.++++++.|...+...   .++||.|++
T Consensus        70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~---~~~fD~Vl~  146 (264)
T TIGR00446        70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAA---VPKFDAILL  146 (264)
T ss_pred             CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhh---ccCCCEEEE
Confidence            4588999999999999988887653 469999999999999999999999998899999998876432   256999998


Q ss_pred             cCc--------------------------ccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHH
Q 026122          153 RAV--------------------------AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKN  189 (243)
Q Consensus       153 ~~~--------------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~  189 (243)
                      ++.                          ....++++.+.+.|||||+++........+|-++
T Consensus       147 D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~  209 (264)
T TIGR00446       147 DAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEA  209 (264)
T ss_pred             cCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHH
Confidence            530                          0135689999999999999988776555444333

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.53  E-value=6.7e-14  Score=113.70  Aligned_cols=103  Identities=23%  Similarity=0.331  Sum_probs=85.2

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEE
Q 026122           72 SCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        72 ~~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      .++++.+|||||||||+.+..+|+.-  .+|+.+|+.++..+.|+++.+.+|..||.++++|...-...   ..+||.|+
T Consensus        69 ~~~~g~~VLEIGtGsGY~aAvla~l~--~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~---~aPyD~I~  143 (209)
T COG2518          69 ELKPGDRVLEIGTGSGYQAAVLARLV--GRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPE---EAPYDRII  143 (209)
T ss_pred             CCCCCCeEEEECCCchHHHHHHHHHh--CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCC---CCCcCEEE
Confidence            35679999999999999999999874  49999999999999999999999998999999998775433   26899999


Q ss_pred             EcCcc-c-HHHHHHHHccCcccCeEEEEEeCCCc
Q 026122          152 ARAVA-E-MRILAEYCLPLVRVGGLFVAAKGHDP  183 (243)
Q Consensus       152 ~~~~~-~-~~~~l~~~~~~LkpgG~l~~~~~~~~  183 (243)
                      ..+-. . ++.+    .+.||+||++++..|...
T Consensus       144 Vtaaa~~vP~~L----l~QL~~gGrlv~PvG~~~  173 (209)
T COG2518         144 VTAAAPEVPEAL----LDQLKPGGRLVIPVGSGP  173 (209)
T ss_pred             EeeccCCCCHHH----HHhcccCCEEEEEEccCC
Confidence            87532 2 3444    458999999999888433

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.53  E-value=1.7e-13  Score=113.28  Aligned_cols=100  Identities=21%  Similarity=0.258  Sum_probs=82.4

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      .++.+|||+|||+|..+..++...  .+|+++|+++++++.+++++++.++.+++++.+|..+....   .++||+|++.
T Consensus        77 ~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~---~~~fD~I~~~  151 (212)
T PRK00312         77 KPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPA---YAPFDRILVT  151 (212)
T ss_pred             CCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCc---CCCcCEEEEc
Confidence            457899999999999988888764  48999999999999999999999998899999998653222   2679999997


Q ss_pred             CcccHHHHHHHHccCcccCeEEEEEeC
Q 026122          154 AVAEMRILAEYCLPLVRVGGLFVAAKG  180 (243)
Q Consensus       154 ~~~~~~~~l~~~~~~LkpgG~l~~~~~  180 (243)
                      +.  ...+.+.+.+.|+|||.+++..+
T Consensus       152 ~~--~~~~~~~l~~~L~~gG~lv~~~~  176 (212)
T PRK00312        152 AA--APEIPRALLEQLKEGGILVAPVG  176 (212)
T ss_pred             cC--chhhhHHHHHhcCCCcEEEEEEc
Confidence            53  23445677889999999998766

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.52  E-value=1.2e-12  Score=119.61  Aligned_cols=129  Identities=13%  Similarity=0.027  Sum_probs=97.3

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC-cCCCCceEEEE
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-SFREQYDVAVA  152 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-~~~~~fD~I~~  152 (243)
                      .++.+|||+|||+|.+++.+|...  .+|+|+|+|+.|++.|++|++.+++.+++++++|+.+..... ...++||+|++
T Consensus       296 ~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~  373 (443)
T PRK13168        296 QPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLL  373 (443)
T ss_pred             CCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEE
Confidence            347899999999999999998763  699999999999999999999999988999999997642110 01257999999


Q ss_pred             cCc-ccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEEEe
Q 026122          153 RAV-AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVE  208 (243)
Q Consensus       153 ~~~-~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~  208 (243)
                      +.. ....+.++.+.+ ++|++.++++.++.+  -.+++ ..+.+.||++.+++.++
T Consensus       374 dPPr~g~~~~~~~l~~-~~~~~ivyvSCnp~t--laRDl-~~L~~~gY~l~~i~~~D  426 (443)
T PRK13168        374 DPPRAGAAEVMQALAK-LGPKRIVYVSCNPAT--LARDA-GVLVEAGYRLKRAGMLD  426 (443)
T ss_pred             CcCCcChHHHHHHHHh-cCCCeEEEEEeChHH--hhccH-HHHhhCCcEEEEEEEec
Confidence            742 224556666555 689988888765432  22232 33456799999999888

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=99.52  E-value=1.3e-13  Score=115.67  Aligned_cols=103  Identities=18%  Similarity=0.244  Sum_probs=86.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCC---cCCCCceE
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDV---SFREQYDV  149 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~---~~~~~fD~  149 (243)
                      ++.+|||+|||+|..++.++...+ +++|+++|+++++++.|+++++++++. +++++.+|+.+.....   ...++||+
T Consensus        68 ~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~  147 (234)
T PLN02781         68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDF  147 (234)
T ss_pred             CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCE
Confidence            378999999999999888887654 689999999999999999999999986 4999999997752110   00257999


Q ss_pred             EEEcCc-ccHHHHHHHHccCcccCeEEEE
Q 026122          150 AVARAV-AEMRILAEYCLPLVRVGGLFVA  177 (243)
Q Consensus       150 I~~~~~-~~~~~~l~~~~~~LkpgG~l~~  177 (243)
                      |+..+. ..+..+++.+.+.|+|||.+++
T Consensus       148 VfiDa~k~~y~~~~~~~~~ll~~GG~ii~  176 (234)
T PLN02781        148 AFVDADKPNYVHFHEQLLKLVKVGGIIAF  176 (234)
T ss_pred             EEECCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence            999864 4678899999999999999885

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.52  E-value=6.9e-13  Score=120.91  Aligned_cols=129  Identities=17%  Similarity=0.117  Sum_probs=98.1

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC-cCCCCceEE
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-SFREQYDVA  150 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-~~~~~fD~I  150 (243)
                      ..++.+|||+|||+|..++.++... +.++|+++|+++.+++.++++++++|+.+++++++|+.++.... ...++||.|
T Consensus       250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V  329 (434)
T PRK14901        250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRI  329 (434)
T ss_pred             CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEE
Confidence            3468899999999999998888764 35799999999999999999999999988999999998764210 012679999


Q ss_pred             EEcCc----c----------------------cHHHHHHHHccCcccCeEEEEEeCCCcH-HHHHHHHHHHHHh-CCee
Q 026122          151 VARAV----A----------------------EMRILAEYCLPLVRVGGLFVAAKGHDPQ-EEVKNSERAVQLM-GASL  201 (243)
Q Consensus       151 ~~~~~----~----------------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~-~~~~~~~~~l~~~-g~~~  201 (243)
                      ++++.    .                      ...++++.+.+.|||||+++.....-.. +....+...++++ ++.+
T Consensus       330 l~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~~~~~~  408 (434)
T PRK14901        330 LLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARHPDWKL  408 (434)
T ss_pred             EEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhCCCcEe
Confidence            98531    0                      0468899999999999999887754433 3334445556665 4543

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.52  E-value=3.6e-13  Score=111.84  Aligned_cols=126  Identities=20%  Similarity=0.186  Sum_probs=105.0

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccccccCCcCCCCceEE
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVA  150 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~fD~I  150 (243)
                      +.++.+|+|.|+|||.++..||... |.++|+.+|+.++.++.|++|.+..++.| +++..+|+.+....    +.||+|
T Consensus        92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~----~~vDav  167 (256)
T COG2519          92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDE----EDVDAV  167 (256)
T ss_pred             CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccc----cccCEE
Confidence            4569999999999999999999754 66899999999999999999999999876 99999999887553    589999


Q ss_pred             EEcCcccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEE
Q 026122          151 VARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLC  205 (243)
Q Consensus       151 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~  205 (243)
                      +... +++-++++.++..|+|||.+++..+.  .+++....+.+++.||...+..
T Consensus       168 ~LDm-p~PW~~le~~~~~Lkpgg~~~~y~P~--veQv~kt~~~l~~~g~~~ie~~  219 (256)
T COG2519         168 FLDL-PDPWNVLEHVSDALKPGGVVVVYSPT--VEQVEKTVEALRERGFVDIEAV  219 (256)
T ss_pred             EEcC-CChHHHHHHHHHHhCCCcEEEEEcCC--HHHHHHHHHHHHhcCccchhhh
Confidence            9864 45567889999999999998887754  3456667777888888655543

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.51  E-value=4.9e-13  Score=122.24  Aligned_cols=129  Identities=17%  Similarity=0.157  Sum_probs=97.6

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEE
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      +.++.+|||+|||+|..++.++... ++++|+++|+++.+++.++++++++|+.+++++++|+.++...  ..++||+|+
T Consensus       248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~--~~~~fD~Vl  325 (444)
T PRK14902        248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEK--FAEKFDKIL  325 (444)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccch--hcccCCEEE
Confidence            3567899999999999999998775 5689999999999999999999999998899999999876421  126799999


Q ss_pred             EcCc----c---------------c-------HHHHHHHHccCcccCeEEEEEeCCCcHHHHH-HHHHHHHHhC-CeeeE
Q 026122          152 ARAV----A---------------E-------MRILAEYCLPLVRVGGLFVAAKGHDPQEEVK-NSERAVQLMG-ASLLQ  203 (243)
Q Consensus       152 ~~~~----~---------------~-------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~-~~~~~l~~~g-~~~~~  203 (243)
                      +++.    .               +       ...+++.+.++|||||.++........+|-. .+...+++.+ +..+.
T Consensus       326 ~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~~~~~~~~  405 (444)
T PRK14902        326 VDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEEHPEFELVP  405 (444)
T ss_pred             EcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHhCCCcEEec
Confidence            8641    0               0       2468999999999999998766544333322 3334455553 55443

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.51  E-value=1.6e-13  Score=116.89  Aligned_cols=155  Identities=15%  Similarity=0.076  Sum_probs=110.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccccccCCcCCCCceEEEEcC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      |++|||||||+|+.+..++.. +...|+|+|.+.....+.+-..+-.|.+. +..+...+++++. .   +.||+|+|.+
T Consensus       116 gk~VLDIGC~nGY~~frM~~~-GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~---~~FDtVF~MG  190 (315)
T PF08003_consen  116 GKRVLDIGCNNGYYSFRMLGR-GAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-L---GAFDTVFSMG  190 (315)
T ss_pred             CCEEEEecCCCcHHHHHHhhc-CCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-c---CCcCEEEEee
Confidence            899999999999999888866 34689999999987766655555555443 4444457777765 2   7899999987


Q ss_pred             c----ccHHHHHHHHccCcccCeEEEEEe----CC-----------------CcHHHHHHHHHHHHHhCCeeeEEEEEec
Q 026122          155 V----AEMRILAEYCLPLVRVGGLFVAAK----GH-----------------DPQEEVKNSERAVQLMGASLLQLCSVES  209 (243)
Q Consensus       155 ~----~~~~~~l~~~~~~LkpgG~l~~~~----~~-----------------~~~~~~~~~~~~l~~~g~~~~~~~~~~~  209 (243)
                      +    .++-..+++++..|++||.+++..    |.                 +.-+.+..+..+++++||..+++..+..
T Consensus       191 VLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~~v~~~~  270 (315)
T PF08003_consen  191 VLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKDVRCVDVSP  270 (315)
T ss_pred             ehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCceEEEecCcc
Confidence            4    378888999999999999999653    21                 1122456788899999999888776665


Q ss_pred             CCCCCceEE--EEE-------E--eeCCCCCCCCCCC
Q 026122          210 QSPFGQRTA--VVC-------L--KSRRTPKKYPRDP  235 (243)
Q Consensus       210 ~~~~~~r~~--v~~-------~--k~~~~~~~yp~~~  235 (243)
                      .....+|.-  +-.       .  ...+|=++||.+.
T Consensus       271 Tt~~EQR~T~Wm~~~SL~dFLDp~d~~~TiEGyPAP~  307 (315)
T PF08003_consen  271 TTIEEQRKTDWMDFQSLEDFLDPNDPSKTIEGYPAPK  307 (315)
T ss_pred             CCHHHhccCCCcCcccHHHhcCCCCCCCcccCCCCce
Confidence            544444432  111       1  1244558888753

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.51  E-value=8.3e-13  Score=109.64  Aligned_cols=123  Identities=18%  Similarity=0.186  Sum_probs=91.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      +.+|||+|||+|..+..++..  +.+|+|+|+|+++++.++++....+. .++++.++|+.+..      ++||+|++..
T Consensus        56 ~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~fD~ii~~~  127 (219)
T TIGR02021        56 GKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC------GEFDIVVCMD  127 (219)
T ss_pred             CCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC------CCcCEEEEhh
Confidence            789999999999999888864  56999999999999999999887776 36999999998763      5799999854


Q ss_pred             c------ccHHHHHHHHccCcccCeEEEEEeCCCcH---------------------HHHHHHHHHHHHhCCeeeEEEE
Q 026122          155 V------AEMRILAEYCLPLVRVGGLFVAAKGHDPQ---------------------EEVKNSERAVQLMGASLLQLCS  206 (243)
Q Consensus       155 ~------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~---------------------~~~~~~~~~l~~~g~~~~~~~~  206 (243)
                      .      .+...+++.+.+.+++++.+.+.......                     ....++.+.++.+||.++..+.
T Consensus       128 ~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~  206 (219)
T TIGR02021       128 VLIHYPASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREGL  206 (219)
T ss_pred             HHHhCCHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeeec
Confidence            2      24567888888888877665542211100                     0224466667788888776654

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.51  E-value=9.8e-13  Score=109.28  Aligned_cols=129  Identities=18%  Similarity=0.258  Sum_probs=100.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~-  154 (243)
                      +.+|||+|||+|..+..+++.  +.+++++|+++.+++.++++....+..++++.+.|+.+.....  .++||+|+++. 
T Consensus        46 ~~~vLdlG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~D~i~~~~~  121 (224)
T TIGR01983        46 GLRVLDVGCGGGLLSEPLARL--GANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKG--AKSFDVVTCMEV  121 (224)
T ss_pred             CCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCC--CCCccEEEehhH
Confidence            679999999999998877764  4579999999999999999988877656899999988775432  26899999864 


Q ss_pred             ---cccHHHHHHHHccCcccCeEEEEEeCCCcH-H--------------------------HHHHHHHHHHHhCCeeeEE
Q 026122          155 ---VAEMRILAEYCLPLVRVGGLFVAAKGHDPQ-E--------------------------EVKNSERAVQLMGASLLQL  204 (243)
Q Consensus       155 ---~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~-~--------------------------~~~~~~~~l~~~g~~~~~~  204 (243)
                         ..+...+++.+.+.|+|||.+++....... .                          ...++.+.+++.|++++++
T Consensus       122 l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~i~~~  201 (224)
T TIGR01983       122 LEHVPDPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGLRVKDV  201 (224)
T ss_pred             HHhCCCHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCeeeee
Confidence               457889999999999999998875421110 0                          1134666778999998887


Q ss_pred             EEEe
Q 026122          205 CSVE  208 (243)
Q Consensus       205 ~~~~  208 (243)
                      ..+.
T Consensus       202 ~~~~  205 (224)
T TIGR01983       202 KGLV  205 (224)
T ss_pred             eeEE
Confidence            6544

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.51  E-value=2.6e-13  Score=106.39  Aligned_cols=90  Identities=18%  Similarity=0.185  Sum_probs=69.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~-  154 (243)
                      +.+|||+|||+|..+..++..  +.+|+|+|+++.+++.          .++.....+.......   .++||+|+++. 
T Consensus        23 ~~~vLDiGcG~G~~~~~l~~~--~~~~~g~D~~~~~~~~----------~~~~~~~~~~~~~~~~---~~~fD~i~~~~~   87 (161)
T PF13489_consen   23 GKRVLDIGCGTGSFLRALAKR--GFEVTGVDISPQMIEK----------RNVVFDNFDAQDPPFP---DGSFDLIICNDV   87 (161)
T ss_dssp             TSEEEEESSTTSHHHHHHHHT--TSEEEEEESSHHHHHH----------TTSEEEEEECHTHHCH---SSSEEEEEEESS
T ss_pred             CCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHhh----------hhhhhhhhhhhhhhcc---ccchhhHhhHHH
Confidence            789999999999998888654  4599999999998876          2233333333333222   27899999976 


Q ss_pred             ---cccHHHHHHHHccCcccCeEEEEEeC
Q 026122          155 ---VAEMRILAEYCLPLVRVGGLFVAAKG  180 (243)
Q Consensus       155 ---~~~~~~~l~~~~~~LkpgG~l~~~~~  180 (243)
                         +.++..+++.+.++|||||++++...
T Consensus        88 l~~~~d~~~~l~~l~~~LkpgG~l~~~~~  116 (161)
T PF13489_consen   88 LEHLPDPEEFLKELSRLLKPGGYLVISDP  116 (161)
T ss_dssp             GGGSSHHHHHHHHHHHCEEEEEEEEEEEE
T ss_pred             HhhcccHHHHHHHHHHhcCCCCEEEEEEc
Confidence               45789999999999999999998773

...

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.51  E-value=2.5e-12  Score=107.59  Aligned_cols=128  Identities=18%  Similarity=0.249  Sum_probs=98.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~-  154 (243)
                      +.+|||||||+|..+..+++.  +++|+++|+++.+++.++++....+. +++++.+++.+.....  .++||+|++.. 
T Consensus        49 ~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~fD~Ii~~~~  123 (233)
T PRK05134         49 GKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGL-KIDYRQTTAEELAAEH--PGQFDVVTCMEM  123 (233)
T ss_pred             CCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCC-ceEEEecCHHHhhhhc--CCCccEEEEhhH
Confidence            779999999999998888764  57899999999999999998877666 4788888888764221  26899999853 


Q ss_pred             ---cccHHHHHHHHccCcccCeEEEEEeCCCcHH---------------------------HHHHHHHHHHHhCCeeeEE
Q 026122          155 ---VAEMRILAEYCLPLVRVGGLFVAAKGHDPQE---------------------------EVKNSERAVQLMGASLLQL  204 (243)
Q Consensus       155 ---~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~---------------------------~~~~~~~~l~~~g~~~~~~  204 (243)
                         ..+...+++.+.+.|+|||.+++........                           ...++.+.+++.||.++..
T Consensus       124 l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~  203 (233)
T PRK05134        124 LEHVPDPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQDI  203 (233)
T ss_pred             hhccCCHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEeee
Confidence               4578889999999999999988764211100                           1234667788999988876


Q ss_pred             EEEe
Q 026122          205 CSVE  208 (243)
Q Consensus       205 ~~~~  208 (243)
                      ..+.
T Consensus       204 ~~~~  207 (233)
T PRK05134        204 TGLH  207 (233)
T ss_pred             eeEE
Confidence            5444

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.50  E-value=1.7e-13  Score=112.86  Aligned_cols=103  Identities=22%  Similarity=0.306  Sum_probs=79.9

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEE
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      ++++.+|||||||+|+.+..+|... +..+|++||+++..++.|+++++.++..|++++++|.......   ..+||.|+
T Consensus        70 l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~---~apfD~I~  146 (209)
T PF01135_consen   70 LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPE---EAPFDRII  146 (209)
T ss_dssp             C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGG---G-SEEEEE
T ss_pred             cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhcccc---CCCcCEEE
Confidence            5679999999999999998888775 3468999999999999999999999999999999998765433   26899999


Q ss_pred             EcCc-ccHHHHHHHHccCcccCeEEEEEeCC
Q 026122          152 ARAV-AEMRILAEYCLPLVRVGGLFVAAKGH  181 (243)
Q Consensus       152 ~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~~  181 (243)
                      +.+. ....   ..+.+.|++||++++..+.
T Consensus       147 v~~a~~~ip---~~l~~qL~~gGrLV~pi~~  174 (209)
T PF01135_consen  147 VTAAVPEIP---EALLEQLKPGGRLVAPIGQ  174 (209)
T ss_dssp             ESSBBSS-----HHHHHTEEEEEEEEEEESS
T ss_pred             EeeccchHH---HHHHHhcCCCcEEEEEEcc
Confidence            9763 3322   3455689999999987764

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.50  E-value=2.5e-12  Score=102.30  Aligned_cols=162  Identities=12%  Similarity=0.150  Sum_probs=108.6

Q ss_pred             HHHHHHHHHHHhc-cCCccccCChHHHHHHhHhhhcccCCCcccccCccCCCCCCCCCeEEEEcCCCChHHHHHHHHCCC
Q 026122           21 LGLFLKKRKQNLQ-KMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLVLAIACPD   99 (243)
Q Consensus        21 l~~~~~~~~~~n~-~~n~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~   99 (243)
                      ++...+.+..+-. +..+.++.+..++-..-+.... ..-.++             +.+|+|+|||||.+++..+.. +.
T Consensus         4 Le~~l~kl~~f~~p~~~LEQY~Tp~~~Aa~il~~a~-~~g~l~-------------g~~V~DlG~GTG~La~ga~~l-Ga   68 (198)
T COG2263           4 LEILLEKLKGFPNPKLGLEQYRTPAPLAAYILWVAY-LRGDLE-------------GKTVLDLGAGTGILAIGAALL-GA   68 (198)
T ss_pred             hhhhhhhhcCCCCCCccceecCCChHHHHHHHHHHH-HcCCcC-------------CCEEEEcCCCcCHHHHHHHhc-CC
Confidence            4444555555543 7778888888877665555544 222232             778999999999999887755 55


Q ss_pred             CEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC-------cccHHHHHHHHccCcccC
Q 026122          100 WKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-------VAEMRILAEYCLPLVRVG  172 (243)
Q Consensus       100 ~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~-------~~~~~~~l~~~~~~Lkpg  172 (243)
                      .+|+|||+++++++.+++|+.+++ .+++++++|+.++.      .++|.+++|.       .++ ..+++.+.+.-   
T Consensus        69 ~~V~~vdiD~~a~ei~r~N~~~l~-g~v~f~~~dv~~~~------~~~dtvimNPPFG~~~rhaD-r~Fl~~Ale~s---  137 (198)
T COG2263          69 SRVLAVDIDPEALEIARANAEELL-GDVEFVVADVSDFR------GKFDTVIMNPPFGSQRRHAD-RPFLLKALEIS---  137 (198)
T ss_pred             cEEEEEecCHHHHHHHHHHHHhhC-CceEEEEcchhhcC------CccceEEECCCCccccccCC-HHHHHHHHHhh---
Confidence            799999999999999999999843 46999999999975      6799999984       123 23333333321   


Q ss_pred             eEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEEEecCC
Q 026122          173 GLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQS  211 (243)
Q Consensus       173 G~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~  211 (243)
                      -.++-.+......-   +.+....+|+.+.....+.++-
T Consensus       138 ~vVYsiH~a~~~~f---~~~~~~~~G~~v~~~~~~~~~i  173 (198)
T COG2263         138 DVVYSIHKAGSRDF---VEKFAADLGGTVTHIERARFPI  173 (198)
T ss_pred             heEEEeeccccHHH---HHHHHHhcCCeEEEEEEEEEec
Confidence            23343333332222   2344568898887776666543

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.50  E-value=4e-13  Score=122.18  Aligned_cols=127  Identities=17%  Similarity=0.189  Sum_probs=98.0

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEE
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      +.++.+|||+|||+|..++.++... ++++|+++|+|+++++.+++++++.|+.+++++++|..++...  ..++||.|+
T Consensus       235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~--~~~~fD~Vl  312 (431)
T PRK14903        235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEY--VQDTFDRIL  312 (431)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhh--hhccCCEEE
Confidence            4568899999999999998888765 4679999999999999999999999998899999999876421  126799999


Q ss_pred             EcCcc--------------------------cHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHH-HHHHHh-CCee
Q 026122          152 ARAVA--------------------------EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSE-RAVQLM-GASL  201 (243)
Q Consensus       152 ~~~~~--------------------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~-~~l~~~-g~~~  201 (243)
                      +++..                          ...++++.+.+.|||||.+++..+....+|-.+.. ..++++ ++.+
T Consensus       313 ~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~~~~~~~~  390 (431)
T PRK14903        313 VDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVYEQKDAEV  390 (431)
T ss_pred             ECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHHhCCCcEE
Confidence            85310                          13667889999999999999888765545444433 344443 4543

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=99.50  E-value=2.1e-13  Score=109.52  Aligned_cols=100  Identities=22%  Similarity=0.207  Sum_probs=82.7

Q ss_pred             CeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEE-EEEccccccccCCcCCCCceEEEEc--
Q 026122           77 LKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQ-IVRGRAETLGKDVSFREQYDVAVAR--  153 (243)
Q Consensus        77 ~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~-~~~~d~~~~~~~~~~~~~fD~I~~~--  153 (243)
                      ..||++|||||..--. -...|.++||++|++++|-+++.+.++.....+++ |+.++.++++...  ++++|.|++.  
T Consensus        78 ~~vLEvgcGtG~Nfkf-y~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~--d~s~DtVV~Tlv  154 (252)
T KOG4300|consen   78 GDVLEVGCGTGANFKF-YPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLA--DGSYDTVVCTLV  154 (252)
T ss_pred             cceEEecccCCCCccc-ccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccc--cCCeeeEEEEEE
Confidence            4689999999987322 22237899999999999999999998887666666 9999999987332  3799999985  


Q ss_pred             --CcccHHHHHHHHccCcccCeEEEEEe
Q 026122          154 --AVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       154 --~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                        ++.+..+.+++..++|+|||++++++
T Consensus       155 LCSve~~~k~L~e~~rlLRpgG~iifiE  182 (252)
T KOG4300|consen  155 LCSVEDPVKQLNEVRRLLRPGGRIIFIE  182 (252)
T ss_pred             EeccCCHHHHHHHHHHhcCCCcEEEEEe
Confidence              36689999999999999999999876

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.50  E-value=2.2e-13  Score=116.88  Aligned_cols=102  Identities=20%  Similarity=0.199  Sum_probs=78.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCC---CEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPD---WKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      ..+|||+|||+|..+..++...+.   .+|+|+|+|+.+++.|+++     ..++++..+|+.+++..+   ++||+|++
T Consensus        86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~-----~~~~~~~~~d~~~lp~~~---~sfD~I~~  157 (272)
T PRK11088         86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR-----YPQVTFCVASSHRLPFAD---QSLDAIIR  157 (272)
T ss_pred             CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh-----CCCCeEEEeecccCCCcC---CceeEEEE
Confidence            568999999999999888876542   4899999999999988654     246889999998876543   78999998


Q ss_pred             cCcccHHHHHHHHccCcccCeEEEEEeC-CCcHHHHH
Q 026122          153 RAVAEMRILAEYCLPLVRVGGLFVAAKG-HDPQEEVK  188 (243)
Q Consensus       153 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~-~~~~~~~~  188 (243)
                      ...   ...++++.++|||||++++... .....++.
T Consensus       158 ~~~---~~~~~e~~rvLkpgG~li~~~p~~~~l~el~  191 (272)
T PRK11088        158 IYA---PCKAEELARVVKPGGIVITVTPGPRHLFELK  191 (272)
T ss_pred             ecC---CCCHHHHHhhccCCCEEEEEeCCCcchHHHH
Confidence            543   2345788999999999998763 33333443

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=99.50  E-value=7.9e-13  Score=111.17  Aligned_cols=131  Identities=18%  Similarity=0.146  Sum_probs=99.1

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEE
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIA-CPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVA  150 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I  150 (243)
                      +.+|.+|||.|+|+|.++..+++. .|.++|+..|..++.++.|+++.+.+++. ++++.+.|+.+-.........+|.|
T Consensus        38 i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~Dav  117 (247)
T PF08704_consen   38 IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDFDAV  117 (247)
T ss_dssp             --TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSEEEE
T ss_pred             CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcccEE
Confidence            456999999999999999999965 47889999999999999999999999996 6999999996532221223679999


Q ss_pred             EEcCcccHHHHHHHHccCc-ccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEE
Q 026122          151 VARAVAEMRILAEYCLPLV-RVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCS  206 (243)
Q Consensus       151 ~~~~~~~~~~~l~~~~~~L-kpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~  206 (243)
                      +..-.. +-..+..+.+.| ++||++++..+.  .+++....+.|++.||..++..+
T Consensus       118 fLDlp~-Pw~~i~~~~~~L~~~gG~i~~fsP~--ieQv~~~~~~L~~~gf~~i~~~E  171 (247)
T PF08704_consen  118 FLDLPD-PWEAIPHAKRALKKPGGRICCFSPC--IEQVQKTVEALREHGFTDIETVE  171 (247)
T ss_dssp             EEESSS-GGGGHHHHHHHE-EEEEEEEEEESS--HHHHHHHHHHHHHTTEEEEEEEE
T ss_pred             EEeCCC-HHHHHHHHHHHHhcCCceEEEECCC--HHHHHHHHHHHHHCCCeeeEEEE
Confidence            986443 344567788889 899999888764  45667778889999998766554

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK00811 spermidine synthase; Provisional

Probab=99.49  E-value=1.6e-12  Score=112.10  Aligned_cols=145  Identities=16%  Similarity=0.186  Sum_probs=102.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC-----CCCEEEEEccccccccCCcCCCCceEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ-----LLNVQIVRGRAETLGKDVSFREQYDVA  150 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~~~~fD~I  150 (243)
                      +.+|||||||+|..+..+++..+..+|++||+++.+++.+++.....+     -++++++.+|..++....  .++||+|
T Consensus        77 p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~--~~~yDvI  154 (283)
T PRK00811         77 PKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAET--ENSFDVI  154 (283)
T ss_pred             CCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhC--CCcccEE
Confidence            679999999999998877755445799999999999999999876532     246999999998764321  3689999


Q ss_pred             EEcCccc--------HHHHHHHHccCcccCeEEEEEeCC--CcHHHHHHHHHHHHHhCCeeeEEEEEecCCCCCc-eEEE
Q 026122          151 VARAVAE--------MRILAEYCLPLVRVGGLFVAAKGH--DPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQ-RTAV  219 (243)
Q Consensus       151 ~~~~~~~--------~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~-r~~v  219 (243)
                      ++.....        -.++++.+++.|+|||.+++..+.  .....+..+.+.++.. |..........|..++. -..+
T Consensus       155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~-F~~v~~~~~~vp~~~~~~w~f~  233 (283)
T PRK00811        155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEV-FPIVRPYQAAIPTYPSGLWSFT  233 (283)
T ss_pred             EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHHH-CCCEEEEEeECCcccCchheeE
Confidence            9964221        277889999999999998876532  2244566666666666 44445444444554344 3445


Q ss_pred             EEEe
Q 026122          220 VCLK  223 (243)
Q Consensus       220 ~~~k  223 (243)
                      ++.+
T Consensus       234 ~as~  237 (283)
T PRK00811        234 FASK  237 (283)
T ss_pred             Eeec
Confidence            5544

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.49  E-value=5e-13  Score=110.33  Aligned_cols=96  Identities=14%  Similarity=0.218  Sum_probs=72.3

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcccccccc-----CCcCCCC
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK-----DVSFREQ  146 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~~~~~~~  146 (243)
                      ++++.+|||||||+|..+..+++.. +.++|+|||+++.           ....+++++++|+.+...     .....++
T Consensus        49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~  117 (209)
T PRK11188         49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DPIVGVDFLQGDFRDELVLKALLERVGDSK  117 (209)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cCCCCcEEEecCCCChHHHHHHHHHhCCCC
Confidence            3558899999999999998888775 4579999999981           233568999999988531     0001268


Q ss_pred             ceEEEEcCcc--------c-------HHHHHHHHccCcccCeEEEEEe
Q 026122          147 YDVAVARAVA--------E-------MRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       147 fD~I~~~~~~--------~-------~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      ||+|+|+...        +       ...+++.+.++|+|||.+++..
T Consensus       118 ~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~  165 (209)
T PRK11188        118 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKV  165 (209)
T ss_pred             CCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence            9999996421        1       2568899999999999998844

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.49  E-value=6.7e-13  Score=107.70  Aligned_cols=118  Identities=14%  Similarity=0.148  Sum_probs=80.7

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccC-----CcCCCCc
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD-----VSFREQY  147 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-----~~~~~~f  147 (243)
                      .++.+|||+|||+|.++..++... +..+|+++|+|+.+           ...+++++++|+.+....     ....++|
T Consensus        31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~   99 (188)
T TIGR00438        31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIENVDFIRGDFTDEEVLNKIRERVGDDKV   99 (188)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCCceEEEeeCCChhHHHHHHHHhCCCCc
Confidence            458899999999999988888765 45789999999853           234688888888764210     0012579


Q ss_pred             eEEEEcCcc---------------cHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEE
Q 026122          148 DVAVARAVA---------------EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLC  205 (243)
Q Consensus       148 D~I~~~~~~---------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~  205 (243)
                      |+|+++...               ....+++.+.+.|+|||++++...  ....+.++...++.. +....+.
T Consensus       100 D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~--~~~~~~~~l~~l~~~-~~~~~~~  169 (188)
T TIGR00438       100 DVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVF--QGEEIDEYLNELRKL-FEKVKVT  169 (188)
T ss_pred             cEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEc--cCccHHHHHHHHHhh-hceEEEe
Confidence            999986421               136789999999999999988542  223344455544443 5444443

>PRK04457 spermidine synthase; Provisional

Probab=99.49  E-value=3.3e-13  Score=115.12  Aligned_cols=102  Identities=15%  Similarity=0.200  Sum_probs=84.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      +.+|||||||+|.++..++...|+.+|++||+++++++.++++....+. ++++++++|+.++...  ..++||+|++++
T Consensus        67 ~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~--~~~~yD~I~~D~  144 (262)
T PRK04457         67 PQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAV--HRHSTDVILVDG  144 (262)
T ss_pred             CCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHh--CCCCCCEEEEeC
Confidence            6799999999999999999888999999999999999999988765443 5699999998775432  136899999865


Q ss_pred             cc--------cHHHHHHHHccCcccCeEEEEEe
Q 026122          155 VA--------EMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       155 ~~--------~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      ..        ...++++.+.+.|+|||.+++..
T Consensus       145 ~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~  177 (262)
T PRK04457        145 FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNL  177 (262)
T ss_pred             CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEc
Confidence            32        13799999999999999988843

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.49  E-value=9.3e-13  Score=118.27  Aligned_cols=106  Identities=15%  Similarity=0.162  Sum_probs=84.5

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC--CEEEEEccccccccCC-cCCCCceEE
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL--NVQIVRGRAETLGKDV-SFREQYDVA  150 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~~~~~-~~~~~fD~I  150 (243)
                      .++.+|||+|||+|.+++.++. .+..+|++||+|+.+++.+++|++.+++.  +++++++|+.++.... ...++||+|
T Consensus       219 ~~g~rVLDlfsgtG~~~l~aa~-~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlV  297 (396)
T PRK15128        219 VENKRVLNCFSYTGGFAVSALM-GGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI  297 (396)
T ss_pred             cCCCeEEEeccCCCHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEE
Confidence            3578999999999999876553 34569999999999999999999999985  6999999998753210 012579999


Q ss_pred             EEcCc-------------ccHHHHHHHHccCcccCeEEEEEeC
Q 026122          151 VARAV-------------AEMRILAEYCLPLVRVGGLFVAAKG  180 (243)
Q Consensus       151 ~~~~~-------------~~~~~~l~~~~~~LkpgG~l~~~~~  180 (243)
                      +++..             ..+..+++.+.++|+|||.++..++
T Consensus       298 ilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc  340 (396)
T PRK15128        298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC  340 (396)
T ss_pred             EECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence            99731             2467777888999999999887664

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.48  E-value=1.1e-12  Score=119.46  Aligned_cols=127  Identities=15%  Similarity=0.124  Sum_probs=94.8

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEE
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      ..++.+|||+|||+|..++.++...++.+|+++|+|+.+++.++++++++|+. ++++++|+.+..... ..++||.|++
T Consensus       242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~-~~~~~~D~~~~~~~~-~~~~fD~Vl~  319 (427)
T PRK10901        242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK-ATVIVGDARDPAQWW-DGQPFDRILL  319 (427)
T ss_pred             CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEcCcccchhhc-ccCCCCEEEE
Confidence            45688999999999999999998776689999999999999999999999885 789999998753210 1257999997


Q ss_pred             cCcc--------------------------cHHHHHHHHccCcccCeEEEEEeCCCc-HHHHHHHHHHHHHh-CCee
Q 026122          153 RAVA--------------------------EMRILAEYCLPLVRVGGLFVAAKGHDP-QEEVKNSERAVQLM-GASL  201 (243)
Q Consensus       153 ~~~~--------------------------~~~~~l~~~~~~LkpgG~l~~~~~~~~-~~~~~~~~~~l~~~-g~~~  201 (243)
                      ++..                          ....+++.+.+.|||||++++....-. .+....+...+++. ++.+
T Consensus       320 D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~~~~~~~  396 (427)
T PRK10901        320 DAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLARHPDAEL  396 (427)
T ss_pred             CCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHhCCCCEE
Confidence            5310                          124789999999999999998775332 22223334444454 4443

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.48  E-value=5.6e-13  Score=116.47  Aligned_cols=102  Identities=19%  Similarity=0.265  Sum_probs=82.6

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEE
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      +++.+|||+|||+|..+..+++..+ ..+|+++|+++++++.|+++++.++.++++++++|..+.....   .+||+|++
T Consensus        79 ~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~---~~fD~Ii~  155 (322)
T PRK13943         79 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEF---APYDVIFV  155 (322)
T ss_pred             CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhccccc---CCccEEEE
Confidence            4578999999999999999998765 3589999999999999999999999988999999987654332   57999998


Q ss_pred             cCcccHHHHHHHHccCcccCeEEEEEeC
Q 026122          153 RAVAEMRILAEYCLPLVRVGGLFVAAKG  180 (243)
Q Consensus       153 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~  180 (243)
                      ...  ...+.+.+.+.|+|||++++..+
T Consensus       156 ~~g--~~~ip~~~~~~LkpgG~Lvv~~~  181 (322)
T PRK13943        156 TVG--VDEVPETWFTQLKEGGRVIVPIN  181 (322)
T ss_pred             CCc--hHHhHHHHHHhcCCCCEEEEEeC
Confidence            642  22334456778999999888654

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.48  E-value=3.8e-12  Score=111.02  Aligned_cols=120  Identities=15%  Similarity=0.124  Sum_probs=84.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC-----CCCEEEEEccccccccCCcCCCCceEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ-----LLNVQIVRGRAETLGKDVSFREQYDVA  150 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~~~~fD~I  150 (243)
                      +.+|||+|||+|.+++.+++.  +.+|+|+|+|+.|++.++++.+..+     ..++++..+|++++      .++||+|
T Consensus       145 ~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l------~~~fD~V  216 (315)
T PLN02585        145 GVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL------SGKYDTV  216 (315)
T ss_pred             CCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc------CCCcCEE
Confidence            679999999999999888864  5799999999999999999987652     23578888888764      2689999


Q ss_pred             EEcCcc------cHHHHHHHHccCcccCeEEEEEeCCCcH-----------------------HHHHHHHHHHHHhCCee
Q 026122          151 VARAVA------EMRILAEYCLPLVRVGGLFVAAKGHDPQ-----------------------EEVKNSERAVQLMGASL  201 (243)
Q Consensus       151 ~~~~~~------~~~~~l~~~~~~LkpgG~l~~~~~~~~~-----------------------~~~~~~~~~l~~~g~~~  201 (243)
                      ++....      ....+++.+.+ +.+||.++. ..+...                       ....++.+.++.+||++
T Consensus       217 v~~~vL~H~p~~~~~~ll~~l~~-l~~g~liIs-~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v  294 (315)
T PLN02585        217 TCLDVLIHYPQDKADGMIAHLAS-LAEKRLIIS-FAPKTLYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGWKV  294 (315)
T ss_pred             EEcCEEEecCHHHHHHHHHHHHh-hcCCEEEEE-eCCcchHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCEE
Confidence            986421      23446666654 456666443 221110                       01355667778899987


Q ss_pred             eEEE
Q 026122          202 LQLC  205 (243)
Q Consensus       202 ~~~~  205 (243)
                      ...+
T Consensus       295 ~~~~  298 (315)
T PLN02585        295 ARRE  298 (315)
T ss_pred             EEEE
Confidence            6544

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.48  E-value=3.3e-13  Score=120.87  Aligned_cols=97  Identities=19%  Similarity=0.205  Sum_probs=80.4

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEE
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      ++++.+|||||||+|.++..++... +++|+|+|+|+++++.++++++  ++ ++++..+|..++      .++||.|++
T Consensus       165 l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~--~l-~v~~~~~D~~~l------~~~fD~Ivs  234 (383)
T PRK11705        165 LKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCA--GL-PVEIRLQDYRDL------NGQFDRIVS  234 (383)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhc--cC-eEEEEECchhhc------CCCCCEEEE
Confidence            3568899999999999998888765 6799999999999999998875  33 378888888765      168999998


Q ss_pred             cCc------ccHHHHHHHHccCcccCeEEEEEe
Q 026122          153 RAV------AEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       153 ~~~------~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      ...      .++..+++.+.++|||||.+++..
T Consensus       235 ~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~  267 (383)
T PRK11705        235 VGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHT  267 (383)
T ss_pred             eCchhhCChHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            642      346889999999999999998754

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.48  E-value=1.1e-12  Score=120.03  Aligned_cols=124  Identities=18%  Similarity=0.160  Sum_probs=95.1

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEE
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      .++.+|||+|||+|..++.++... ++.+|+++|+|+.+++.+++++++.|+.+++++++|+.++..    .++||+|++
T Consensus       249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~----~~~fD~Vl~  324 (445)
T PRK14904        249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSP----EEQPDAILL  324 (445)
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCccccccc----CCCCCEEEE
Confidence            457899999999999988888654 356999999999999999999999999889999999988643    267999997


Q ss_pred             cCc----c----------------------cHHHHHHHHccCcccCeEEEEEeCCCcHHH-HHHHHHHHHHh-CCee
Q 026122          153 RAV----A----------------------EMRILAEYCLPLVRVGGLFVAAKGHDPQEE-VKNSERAVQLM-GASL  201 (243)
Q Consensus       153 ~~~----~----------------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~-~~~~~~~l~~~-g~~~  201 (243)
                      .+.    .                      ....+++.+.+.|||||++++....-..+| -..+...++.+ ++..
T Consensus       325 D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~~~~~~~  401 (445)
T PRK14904        325 DAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQRHPEFSA  401 (445)
T ss_pred             cCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhCCCCEE
Confidence            420    0                      124689999999999999999886544333 22333445555 3543

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.47  E-value=3.3e-13  Score=111.61  Aligned_cols=99  Identities=18%  Similarity=0.032  Sum_probs=75.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH------------cCCCCEEEEEccccccccCCcC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSL------------TQLLNVQIVRGRAETLGKDVSF  143 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~------------~~~~~v~~~~~d~~~~~~~~~~  143 (243)
                      +.+|||+|||.|..++.+|.+  +.+|+|||+|+.+++.+.+....            ..-.+++++++|+.++....  
T Consensus        35 ~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~--  110 (213)
T TIGR03840        35 GARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD--  110 (213)
T ss_pred             CCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc--
Confidence            679999999999999999964  78999999999999975332110            01125899999999876421  


Q ss_pred             CCCceEEEEcCc------ccHHHHHHHHccCcccCeEEEEE
Q 026122          144 REQYDVAVARAV------AEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       144 ~~~fD~I~~~~~------~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                      .++||.|+.++.      .....+++.+.++|||||.+++.
T Consensus       111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~  151 (213)
T TIGR03840       111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLI  151 (213)
T ss_pred             CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence            257999987541      24677999999999999975544

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.47  E-value=6.1e-13  Score=127.65  Aligned_cols=128  Identities=15%  Similarity=0.171  Sum_probs=100.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC--CEEEEEccccccccCCcCCCCceEEEE
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL--NVQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      ++.+|||+|||+|..++.++.. +..+|++||+|+.+++.+++|++.+++.  +++++++|+.++...  ..++||+|++
T Consensus       538 ~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~--~~~~fDlIil  614 (702)
T PRK11783        538 KGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKE--AREQFDLIFI  614 (702)
T ss_pred             CCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHH--cCCCcCEEEE
Confidence            4789999999999999888864 4458999999999999999999999985  599999998775321  1268999999


Q ss_pred             cCc---------------ccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEEEe
Q 026122          153 RAV---------------AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVE  208 (243)
Q Consensus       153 ~~~---------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~  208 (243)
                      +..               .++..++..+.++|+|||.+++..+.......   .+.+.+.|+.+..++...
T Consensus       615 DPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~---~~~~~~~g~~~~~i~~~~  682 (702)
T PRK11783        615 DPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMD---EEGLAKLGLKAEEITAKT  682 (702)
T ss_pred             CCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChh---HHHHHhCCCeEEEEecCC
Confidence            631               13577888999999999999887765432222   555667888877766544

>PHA03411 putative methyltransferase; Provisional

Probab=99.46  E-value=1.3e-12  Score=110.69  Aligned_cols=118  Identities=12%  Similarity=0.082  Sum_probs=89.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~-  154 (243)
                      ..+|||+|||+|.+++.++...++.+|+|+|+|+.+++.++++.     .+++++++|+.++..    .++||+|++|. 
T Consensus        65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~-----~~v~~v~~D~~e~~~----~~kFDlIIsNPP  135 (279)
T PHA03411         65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL-----PEAEWITSDVFEFES----NEKFDVVISNPP  135 (279)
T ss_pred             CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-----cCCEEEECchhhhcc----cCCCcEEEEcCC
Confidence            57999999999999888887766689999999999999988753     368899999988753    26799999962 


Q ss_pred             --------------c---------ccHHHHHHHHccCcccCeEEEEEeCCCc----HHHHHHHHHHHHHhCCeee
Q 026122          155 --------------V---------AEMRILAEYCLPLVRVGGLFVAAKGHDP----QEEVKNSERAVQLMGASLL  202 (243)
Q Consensus       155 --------------~---------~~~~~~l~~~~~~LkpgG~l~~~~~~~~----~~~~~~~~~~l~~~g~~~~  202 (243)
                                    .         ..+..++.....+|+|+|.+++..+..+    +-.-.++.+.++..||...
T Consensus       136 F~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~~g~~~~  210 (279)
T PHA03411        136 FGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQTGLVTY  210 (279)
T ss_pred             ccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHHHhcCcEec
Confidence                          0         0146788888999999998776653211    2223566777889998543

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.45  E-value=2.8e-12  Score=112.30  Aligned_cols=123  Identities=15%  Similarity=0.108  Sum_probs=91.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  155 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~  155 (243)
                      +.+|||+|||+|.+++.+|..  +.+|+|+|+|+.+++.|+++++.+++.+++++++|+.++....  .++||+|+++..
T Consensus       174 ~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~--~~~~D~Vv~dPP  249 (315)
T PRK03522        174 PRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQ--GEVPDLVLVNPP  249 (315)
T ss_pred             CCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhc--CCCCeEEEECCC
Confidence            689999999999999998863  5799999999999999999999999988999999998864321  257999999742


Q ss_pred             c-c-HHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEEEe
Q 026122          156 A-E-MRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVE  208 (243)
Q Consensus       156 ~-~-~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~  208 (243)
                      . . ...+++.+ ..++|++.+++..++....  +++.. +  .|+++.+++.++
T Consensus       250 r~G~~~~~~~~l-~~~~~~~ivyvsc~p~t~~--rd~~~-l--~~y~~~~~~~~D  298 (315)
T PRK03522        250 RRGIGKELCDYL-SQMAPRFILYSSCNAQTMA--KDLAH-L--PGYRIERVQLFD  298 (315)
T ss_pred             CCCccHHHHHHH-HHcCCCeEEEEECCcccch--hHHhh-c--cCcEEEEEEEec
Confidence            1 1 12333333 3357788777766654422  23322 3  589999988877

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.44  E-value=1.3e-12  Score=107.46  Aligned_cols=94  Identities=12%  Similarity=0.104  Sum_probs=73.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      ++.+|||+|||+|..+..++...++.+++|||+|+++++.|+++.     .++++.++|+.+ +..   +++||+|+++.
T Consensus        43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~-----~~~~~~~~d~~~-~~~---~~sfD~V~~~~  113 (204)
T TIGR03587        43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL-----PNINIIQGSLFD-PFK---DNFFDLVLTKG  113 (204)
T ss_pred             CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC-----CCCcEEEeeccC-CCC---CCCEEEEEECC
Confidence            377999999999999988988777889999999999999998753     346788888877 332   27899999976


Q ss_pred             cc------cHHHHHHHHccCcccCeEEEEEe
Q 026122          155 VA------EMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       155 ~~------~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      +.      .+..+++++.+.+  ++.+++..
T Consensus       114 vL~hl~p~~~~~~l~el~r~~--~~~v~i~e  142 (204)
T TIGR03587       114 VLIHINPDNLPTAYRELYRCS--NRYILIAE  142 (204)
T ss_pred             hhhhCCHHHHHHHHHHHHhhc--CcEEEEEE
Confidence            32      3577888888887  44555543

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.44  E-value=7.7e-12  Score=104.22  Aligned_cols=123  Identities=20%  Similarity=0.219  Sum_probs=87.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      +.+|||+|||+|..+..++..  +.+|+|+|+|+.+++.++++....+. .++++..+|+...      .++||+|++..
T Consensus        64 ~~~vLDvGcG~G~~~~~l~~~--~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~------~~~fD~v~~~~  135 (230)
T PRK07580         64 GLRILDAGCGVGSLSIPLARR--GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESL------LGRFDTVVCLD  135 (230)
T ss_pred             CCEEEEEeCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhc------cCCcCEEEEcc
Confidence            679999999999999888865  46799999999999999999888776 4689999995432      26799999864


Q ss_pred             c------ccHHHHHHHHccCcccCeEEEEEeCCCc----------------------HHHHHHHHHHHHHhCCeeeEEEE
Q 026122          155 V------AEMRILAEYCLPLVRVGGLFVAAKGHDP----------------------QEEVKNSERAVQLMGASLLQLCS  206 (243)
Q Consensus       155 ~------~~~~~~l~~~~~~LkpgG~l~~~~~~~~----------------------~~~~~~~~~~l~~~g~~~~~~~~  206 (243)
                      .      .....+++.+.+.+++++.+.+ .....                      .-...++.+.++..||.+.+.+.
T Consensus       136 ~l~~~~~~~~~~~l~~l~~~~~~~~~i~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  214 (230)
T PRK07580        136 VLIHYPQEDAARMLAHLASLTRGSLIFTF-APYTPLLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVVRTER  214 (230)
T ss_pred             hhhcCCHHHHHHHHHHHHhhcCCeEEEEE-CCccHHHHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCceEeeee
Confidence            2      2456677777776654444332 22110                      00123455667788888777655


Q ss_pred             E
Q 026122          207 V  207 (243)
Q Consensus       207 ~  207 (243)
                      +
T Consensus       215 ~  215 (230)
T PRK07580        215 I  215 (230)
T ss_pred             c
Confidence            3

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.44  E-value=5.2e-13  Score=114.02  Aligned_cols=102  Identities=17%  Similarity=0.195  Sum_probs=77.8

Q ss_pred             CCeEEEEcCCCCh----HHHHHHHHCC-----CCEEEEEeCCHHHHHHHHHHHH------Hc------------------
Q 026122           76 NLKLVDVGTGAGL----PGLVLAIACP-----DWKVTLLESMNKRCVFLEHAVS------LT------------------  122 (243)
Q Consensus        76 ~~~VLDiGcG~G~----~~~~la~~~~-----~~~v~~vD~s~~~~~~a~~~~~------~~------------------  122 (243)
                      +.+|+|+|||||.    +++.++...+     +.+|+|+|+|+.|++.|++.+-      ..                  
T Consensus       100 ~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v  179 (264)
T smart00138      100 RVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRV  179 (264)
T ss_pred             CEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEE
Confidence            5699999999996    4555555443     4799999999999999987531      00                  


Q ss_pred             --CC-CCEEEEEccccccccCCcCCCCceEEEEcCc------ccHHHHHHHHccCcccCeEEEEEeC
Q 026122          123 --QL-LNVQIVRGRAETLGKDVSFREQYDVAVARAV------AEMRILAEYCLPLVRVGGLFVAAKG  180 (243)
Q Consensus       123 --~~-~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~------~~~~~~l~~~~~~LkpgG~l~~~~~  180 (243)
                        .+ .+|+|.+.|+.+.+..   .++||+|+|+.+      .....+++.+.+.|+|||++++-.+
T Consensus       180 ~~~ir~~V~F~~~dl~~~~~~---~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~  243 (264)
T smart00138      180 KPELKERVRFAKHNLLAESPP---LGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHS  243 (264)
T ss_pred             ChHHhCcCEEeeccCCCCCCc---cCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECc
Confidence              01 2488999999886543   278999999763      2456899999999999999988543

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=99.43  E-value=1.2e-12  Score=107.86  Aligned_cols=103  Identities=25%  Similarity=0.411  Sum_probs=89.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEE-ccccccccCCcCCCCceEEE
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVR-GRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~-~d~~~~~~~~~~~~~fD~I~  151 (243)
                      +.++|||||++.|+.++.+|...| +.+++.||+++++.+.|++++++.|+.+ ++++. +|..+.-.. ...++||+||
T Consensus        59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~-~~~~~fDliF  137 (219)
T COG4122          59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSR-LLDGSFDLVF  137 (219)
T ss_pred             CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHh-ccCCCccEEE
Confidence            478999999999999999999888 7899999999999999999999999976 88888 577664332 1237899999


Q ss_pred             EcC-cccHHHHHHHHccCcccCeEEEEE
Q 026122          152 ARA-VAEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       152 ~~~-~~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                      ..+ -.++..+++.+.++|+|||.+++-
T Consensus       138 IDadK~~yp~~le~~~~lLr~GGliv~D  165 (219)
T COG4122         138 IDADKADYPEYLERALPLLRPGGLIVAD  165 (219)
T ss_pred             EeCChhhCHHHHHHHHHHhCCCcEEEEe
Confidence            976 557899999999999999998853

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.43  E-value=3.6e-12  Score=115.94  Aligned_cols=124  Identities=17%  Similarity=0.148  Sum_probs=90.9

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEE
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      ..++.+|||+|||+|..+..++...++++|+|+|+++++++.+++++++.|+. .+.+..+|..+.... ...++||.|+
T Consensus       236 ~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~-~~~~~fD~Vl  314 (426)
T TIGR00563       236 PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQW-AENEQFDRIL  314 (426)
T ss_pred             CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccc-ccccccCEEE
Confidence            34688999999999999999998777789999999999999999999999986 234466776544321 0126799999


Q ss_pred             EcC----c------cc----------------HHHHHHHHccCcccCeEEEEEeCCCcHHHHH-HHHHHHHHh
Q 026122          152 ARA----V------AE----------------MRILAEYCLPLVRVGGLFVAAKGHDPQEEVK-NSERAVQLM  197 (243)
Q Consensus       152 ~~~----~------~~----------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~-~~~~~l~~~  197 (243)
                      +.+    .      ++                ...+++.+.+.|||||.+++.......+|-. .+...++++
T Consensus       315 lDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~~~  387 (426)
T TIGR00563       315 LDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQEH  387 (426)
T ss_pred             EcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHHhC
Confidence            752    1      11                3679999999999999999887654333322 233344455

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=99.42  E-value=6.2e-12  Score=112.52  Aligned_cols=124  Identities=13%  Similarity=0.101  Sum_probs=94.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      ++.+|||+|||+|.+++.+|.  ++.+|+|||+|+.+++.+++|++.+++++++++++|+.++...  ...+||+|+++.
T Consensus       233 ~~~~vLDL~cG~G~~~l~la~--~~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~--~~~~~D~vi~DP  308 (374)
T TIGR02085       233 PVTQMWDLFCGVGGFGLHCAG--PDTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATA--QMSAPELVLVNP  308 (374)
T ss_pred             CCCEEEEccCCccHHHHHHhh--cCCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHh--cCCCCCEEEECC
Confidence            367999999999999988884  3579999999999999999999999998899999999875421  124699999974


Q ss_pred             cc--cHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEEEe
Q 026122          155 VA--EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVE  208 (243)
Q Consensus       155 ~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~  208 (243)
                      .-  -...+++.+. .++|++.+++..++.+  -.+++.. |  .||.+.+++.++
T Consensus       309 Pr~G~~~~~l~~l~-~~~p~~ivyvsc~p~T--laRDl~~-L--~gy~l~~~~~~D  358 (374)
T TIGR02085       309 PRRGIGKELCDYLS-QMAPKFILYSSCNAQT--MAKDIAE-L--SGYQIERVQLFD  358 (374)
T ss_pred             CCCCCcHHHHHHHH-hcCCCeEEEEEeCHHH--HHHHHHH-h--cCceEEEEEEec
Confidence            21  1245555554 4789998888776433  2333333 2  689999988877

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.41  E-value=8.5e-12  Score=100.32  Aligned_cols=95  Identities=16%  Similarity=0.246  Sum_probs=73.8

Q ss_pred             CeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCc-
Q 026122           77 LKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV-  155 (243)
Q Consensus        77 ~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~-  155 (243)
                      .++||+|||.|.++..||.+.  .+++++|+|+.+++.|++..+.  ..+|++++.++.+..+.    ++||+|+...+ 
T Consensus        45 ~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~--~~~V~~~~~dvp~~~P~----~~FDLIV~SEVl  116 (201)
T PF05401_consen   45 RRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAG--LPHVEWIQADVPEFWPE----GRFDLIVLSEVL  116 (201)
T ss_dssp             EEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT---SSEEEEES-TTT---S----S-EEEEEEES-G
T ss_pred             ceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCC--CCCeEEEECcCCCCCCC----CCeeEEEEehHh
Confidence            589999999999999998764  5899999999999999987764  46799999999887543    78999998752 


Q ss_pred             ------ccHHHHHHHHccCcccCeEEEEEe
Q 026122          156 ------AEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       156 ------~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                            .++..+++.+...|+|||.+++-+
T Consensus       117 YYL~~~~~L~~~l~~l~~~L~pgG~LV~g~  146 (201)
T PF05401_consen  117 YYLDDAEDLRAALDRLVAALAPGGHLVFGH  146 (201)
T ss_dssp             GGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             HcCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence                  246778999999999999999865

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=99.40  E-value=1e-12  Score=107.89  Aligned_cols=103  Identities=26%  Similarity=0.356  Sum_probs=85.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCC---cCCCCceEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDV---SFREQYDVA  150 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~---~~~~~fD~I  150 (243)
                      ..+||||||++|+.++.+|...| +++|+.+|++++..+.|++++++.|+. +|+++.+|+.+.....   ...++||+|
T Consensus        46 ~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~V  125 (205)
T PF01596_consen   46 PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFV  125 (205)
T ss_dssp             -SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEE
T ss_pred             CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEE
Confidence            67999999999999999998775 689999999999999999999999986 5999999997742210   002579999


Q ss_pred             EEcC-cccHHHHHHHHccCcccCeEEEEE
Q 026122          151 VARA-VAEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       151 ~~~~-~~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                      +..+ -..+..+++.+.++|+|||.+++-
T Consensus       126 FiDa~K~~y~~y~~~~~~ll~~ggvii~D  154 (205)
T PF01596_consen  126 FIDADKRNYLEYFEKALPLLRPGGVIIAD  154 (205)
T ss_dssp             EEESTGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEcccccchhhHHHHHhhhccCCeEEEEc
Confidence            9987 457889999999999999998864

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.40  E-value=3.9e-12  Score=90.93  Aligned_cols=98  Identities=26%  Similarity=0.381  Sum_probs=79.5

Q ss_pred             eEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCcc-
Q 026122           78 KLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAVA-  156 (243)
Q Consensus        78 ~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~-  156 (243)
                      +|+|+|||+|..+..++. .+..+++++|.++.++..+++.....+..+++++.+|+.+....  ..++||+|+++... 
T Consensus         1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~i~~~~~~~   77 (107)
T cd02440           1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPE--ADESFDVIISDPPLH   77 (107)
T ss_pred             CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccc--cCCceEEEEEcccee
Confidence            589999999999877776 56789999999999999888655445555699999999887541  12679999997643 


Q ss_pred             ----cHHHHHHHHccCcccCeEEEEE
Q 026122          157 ----EMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       157 ----~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                          ....+++.+.+.++|||.+++.
T Consensus        78 ~~~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          78 HLVEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             ehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence                4588999999999999998875

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=99.39  E-value=5.7e-12  Score=102.87  Aligned_cols=124  Identities=19%  Similarity=0.130  Sum_probs=95.2

Q ss_pred             CeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCcc
Q 026122           77 LKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAVA  156 (243)
Q Consensus        77 ~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~  156 (243)
                      ..+||||||.|...+.+|..+|+..++|||++...+..+.+.+.+.+++|+.++++|+..+......+++.|.|+.+-..
T Consensus        19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPD   98 (195)
T PF02390_consen   19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPD   98 (195)
T ss_dssp             EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES--
T ss_pred             CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCC
Confidence            38999999999999999999999999999999999999999999999999999999988733211113789999986311


Q ss_pred             ------------cHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHh--CCeee
Q 026122          157 ------------EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLM--GASLL  202 (243)
Q Consensus       157 ------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~--g~~~~  202 (243)
                                  --..+++.+.+.|+|||.+.+.+..  .+-...+.+.+...  +|...
T Consensus        99 PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~--~~y~~~~~~~~~~~~~~f~~~  156 (195)
T PF02390_consen   99 PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDV--EEYAEWMLEQFEESHPGFENI  156 (195)
T ss_dssp             ---SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES---HHHHHHHHHHHHHHSTTEEEE
T ss_pred             CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCC--HHHHHHHHHHHHhcCcCeEEc
Confidence                        1378999999999999999886653  34445566667774  55543

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.39  E-value=6e-12  Score=102.91  Aligned_cols=103  Identities=15%  Similarity=0.040  Sum_probs=80.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  155 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~  155 (243)
                      +.+|||+|||+|.+++.++.. ...+|+++|.++.+++.+++|++.+++.+++++++|+.+.....  .++||+|+++..
T Consensus        54 ~~~vLDl~~GsG~l~l~~lsr-~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~--~~~fDlV~~DPP  130 (199)
T PRK10909         54 DARCLDCFAGSGALGLEALSR-YAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQP--GTPHNVVFVDPP  130 (199)
T ss_pred             CCEEEEcCCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhc--CCCceEEEECCC
Confidence            679999999999999754433 34799999999999999999999999888999999997743211  246999999853


Q ss_pred             --c-cHHHHHHHHcc--CcccCeEEEEEeCC
Q 026122          156 --A-EMRILAEYCLP--LVRVGGLFVAAKGH  181 (243)
Q Consensus       156 --~-~~~~~l~~~~~--~LkpgG~l~~~~~~  181 (243)
                        . -...+++.+..  +|+|+|.+++.+..
T Consensus       131 y~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~  161 (199)
T PRK10909        131 FRKGLLEETINLLEDNGWLADEALIYVESEV  161 (199)
T ss_pred             CCCChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence              1 23455555544  58999998887764

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.38  E-value=2.9e-12  Score=106.34  Aligned_cols=98  Identities=17%  Similarity=0.005  Sum_probs=74.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH------------cCCCCEEEEEccccccccCCcC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSL------------TQLLNVQIVRGRAETLGKDVSF  143 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~------------~~~~~v~~~~~d~~~~~~~~~~  143 (243)
                      +.+|||+|||.|..++.||..  +++|+|||+|+.+++.+.+....            ....+|++.++|+.++....  
T Consensus        38 ~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~--  113 (218)
T PRK13255         38 GSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD--  113 (218)
T ss_pred             CCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc--
Confidence            679999999999999999964  78999999999999876321100            01135899999999875432  


Q ss_pred             CCCceEEEEcC------cccHHHHHHHHccCcccCeEEEE
Q 026122          144 REQYDVAVARA------VAEMRILAEYCLPLVRVGGLFVA  177 (243)
Q Consensus       144 ~~~fD~I~~~~------~~~~~~~l~~~~~~LkpgG~l~~  177 (243)
                      ...||.|+.++      ......+++.+.++|+|||.+++
T Consensus       114 ~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l  153 (218)
T PRK13255        114 LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL  153 (218)
T ss_pred             CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence            25799999754      22468899999999999986443

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=99.38  E-value=9.4e-12  Score=113.41  Aligned_cols=129  Identities=15%  Similarity=0.084  Sum_probs=96.2

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC-cCCCCceEEEE
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-SFREQYDVAVA  152 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-~~~~~fD~I~~  152 (243)
                      .++.+|||+|||+|.+++.+|..  ..+|+|+|+|+.+++.|++|++.+++.|++++.+|+.+..... ...++||+|++
T Consensus       291 ~~~~~vLDl~cG~G~~sl~la~~--~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~  368 (431)
T TIGR00479       291 QGEELVVDAYCGVGTFTLPLAKQ--AKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLL  368 (431)
T ss_pred             CCCCEEEEcCCCcCHHHHHHHHh--CCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEE
Confidence            44679999999999999999875  3689999999999999999999999989999999997742110 01246999999


Q ss_pred             cCcc-c-HHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEEEe
Q 026122          153 RAVA-E-MRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVE  208 (243)
Q Consensus       153 ~~~~-~-~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~  208 (243)
                      +... . ...+++.+.+ ++|++.+++...+   ..+..-...+.+.|+.+..+..++
T Consensus       369 dPPr~G~~~~~l~~l~~-l~~~~ivyvsc~p---~tlard~~~l~~~gy~~~~~~~~D  422 (431)
T TIGR00479       369 DPPRKGCAAEVLRTIIE-LKPERIVYVSCNP---ATLARDLEFLCKEGYGITWVQPVD  422 (431)
T ss_pred             CcCCCCCCHHHHHHHHh-cCCCEEEEEcCCH---HHHHHHHHHHHHCCeeEEEEEEec
Confidence            6522 1 3566665554 7898877775443   233333455667899988888776

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PLN02476 O-methyltransferase

Probab=99.38  E-value=4e-12  Score=108.51  Aligned_cols=104  Identities=24%  Similarity=0.267  Sum_probs=87.4

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCC---cCCCCceE
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDV---SFREQYDV  149 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~---~~~~~fD~  149 (243)
                      +.++|||||||+|..++.+|...+ +.+|+++|.++++.+.|++++++.|+. +++++.+|+.+.....   ...++||+
T Consensus       118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~  197 (278)
T PLN02476        118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDF  197 (278)
T ss_pred             CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCE
Confidence            378999999999999999998654 679999999999999999999999996 5999999987743210   01257999


Q ss_pred             EEEcCc-ccHHHHHHHHccCcccCeEEEEE
Q 026122          150 AVARAV-AEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       150 I~~~~~-~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                      |+..+. ..+..+++.+.++|+|||.+++-
T Consensus       198 VFIDa~K~~Y~~y~e~~l~lL~~GGvIV~D  227 (278)
T PLN02476        198 AFVDADKRMYQDYFELLLQLVRVGGVIVMD  227 (278)
T ss_pred             EEECCCHHHHHHHHHHHHHhcCCCcEEEEe
Confidence            999874 46899999999999999998853

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.37  E-value=6.5e-12  Score=115.82  Aligned_cols=123  Identities=15%  Similarity=0.110  Sum_probs=89.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  155 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~  155 (243)
                      +.+|||||||+|..+..++..  ..+|+|+|+++.+++.+++..  ....+++++++|+.+.... ...++||+|+++..
T Consensus        38 ~~~vLDlGcG~G~~~~~la~~--~~~v~giD~s~~~l~~a~~~~--~~~~~i~~~~~d~~~~~~~-~~~~~fD~I~~~~~  112 (475)
T PLN02336         38 GKSVLELGAGIGRFTGELAKK--AGQVIALDFIESVIKKNESIN--GHYKNVKFMCADVTSPDLN-ISDGSVDLIFSNWL  112 (475)
T ss_pred             CCEEEEeCCCcCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHh--ccCCceEEEEecccccccC-CCCCCEEEEehhhh
Confidence            679999999999999999876  369999999999998765422  1235699999998643211 01268999999752


Q ss_pred             ----c--cHHHHHHHHccCcccCeEEEEEeCC-------------CcHHHHHHHHHHHHHhCCeeeE
Q 026122          156 ----A--EMRILAEYCLPLVRVGGLFVAAKGH-------------DPQEEVKNSERAVQLMGASLLQ  203 (243)
Q Consensus       156 ----~--~~~~~l~~~~~~LkpgG~l~~~~~~-------------~~~~~~~~~~~~l~~~g~~~~~  203 (243)
                          .  ....+++.+.++|||||++++....             ........+.+.+.++|+....
T Consensus       113 l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~  179 (475)
T PLN02336        113 LMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTHYREPRFYTKVFKECHTRDED  179 (475)
T ss_pred             HHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCeecChHHHHHHHHHheeccCC
Confidence                1  2578999999999999999886421             1111345666777787776543

>TIGR00417 speE spermidine synthase

Probab=99.35  E-value=8e-11  Score=100.93  Aligned_cols=145  Identities=14%  Similarity=0.077  Sum_probs=101.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC----CCCEEEEEccccccccCCcCCCCceEEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ----LLNVQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      +.+|||||||+|..+..+++..+..+|+++|+++++++.+++.....+    ..+++++.+|..++....  .++||+|+
T Consensus        73 p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~--~~~yDvIi  150 (270)
T TIGR00417        73 PKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT--ENTFDVII  150 (270)
T ss_pred             CCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC--CCCccEEE
Confidence            569999999999988777755446799999999999999999875532    235888888886643221  26899999


Q ss_pred             EcCcc------c--HHHHHHHHccCcccCeEEEEEeCC--CcHHHHHHHHHHHHHhCCeeeEEEEEecCCCCC-ceEEEE
Q 026122          152 ARAVA------E--MRILAEYCLPLVRVGGLFVAAKGH--DPQEEVKNSERAVQLMGASLLQLCSVESQSPFG-QRTAVV  220 (243)
Q Consensus       152 ~~~~~------~--~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~-~r~~v~  220 (243)
                      +....      .  ..++++.+++.|+|||.+++..+.  ...+.+..+.+.++.. |..........|..+. .-..++
T Consensus       151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~tl~~~-F~~v~~~~~~vp~~~~g~~~~~~  229 (270)
T TIGR00417       151 VDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSESPWIQLELITDLKRDVKEA-FPITEYYTANIPTYPSGLWTFTI  229 (270)
T ss_pred             EeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCCCcccCHHHHHHHHHHHHHH-CCCeEEEEEEcCccccchhEEEE
Confidence            96521      1  468889999999999998886532  2244455555656655 5555555445555433 345555


Q ss_pred             EEe
Q 026122          221 CLK  223 (243)
Q Consensus       221 ~~k  223 (243)
                      +.|
T Consensus       230 as~  232 (270)
T TIGR00417       230 GSK  232 (270)
T ss_pred             EEC
Confidence            555

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PRK06202 hypothetical protein; Provisional

Probab=99.33  E-value=4e-11  Score=100.42  Aligned_cols=89  Identities=21%  Similarity=0.272  Sum_probs=67.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHH----CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIA----CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~----~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      +.+|||+|||+|.++..++..    .++.+|+|+|+|++|++.++++....   ++++...+...++..   +++||+|+
T Consensus        61 ~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~---~~~~~~~~~~~l~~~---~~~fD~V~  134 (232)
T PRK06202         61 PLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP---GVTFRQAVSDELVAE---GERFDVVT  134 (232)
T ss_pred             CcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC---CCeEEEEeccccccc---CCCccEEE
Confidence            679999999999998888753    24569999999999999998765433   355666666555432   26899999


Q ss_pred             EcCc----cc--HHHHHHHHccCcc
Q 026122          152 ARAV----AE--MRILAEYCLPLVR  170 (243)
Q Consensus       152 ~~~~----~~--~~~~l~~~~~~Lk  170 (243)
                      ++..    .+  ...+++++.++++
T Consensus       135 ~~~~lhh~~d~~~~~~l~~~~r~~~  159 (232)
T PRK06202        135 SNHFLHHLDDAEVVRLLADSAALAR  159 (232)
T ss_pred             ECCeeecCChHHHHHHHHHHHHhcC
Confidence            9752    22  4579999999987

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=99.33  E-value=1.3e-10  Score=101.31  Aligned_cols=80  Identities=14%  Similarity=0.248  Sum_probs=61.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc-CCC-CEEEEE-ccccccccCC-cCCCCceEE
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT-QLL-NVQIVR-GRAETLGKDV-SFREQYDVA  150 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~~-~v~~~~-~d~~~~~~~~-~~~~~fD~I  150 (243)
                      .+.++||||||+|.+...++...++++++|+|+++.+++.|+++++.+ ++. +++++. .+..++.... ...++||+|
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli  193 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT  193 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence            357999999999998888887778899999999999999999999999 786 487764 3333322110 012689999


Q ss_pred             EEcC
Q 026122          151 VARA  154 (243)
Q Consensus       151 ~~~~  154 (243)
                      +||-
T Consensus       194 vcNP  197 (321)
T PRK11727        194 LCNP  197 (321)
T ss_pred             EeCC
Confidence            9983

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=99.32  E-value=1e-10  Score=95.06  Aligned_cols=115  Identities=12%  Similarity=0.066  Sum_probs=87.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccc-cccCCcCCCCceEEEEc-
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAET-LGKDVSFREQYDVAVAR-  153 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~~~~~~~~~~fD~I~~~-  153 (243)
                      +.-|||||||||..+-.+..  ++...+|+|+|+.|++.|.+  +...   -.++.+|+-+ +++.   ++.||.+|+- 
T Consensus        51 ~~~iLDIGCGsGLSg~vL~~--~Gh~wiGvDiSpsML~~a~~--~e~e---gdlil~DMG~Glpfr---pGtFDg~ISIS  120 (270)
T KOG1541|consen   51 SGLILDIGCGSGLSGSVLSD--SGHQWIGVDISPSMLEQAVE--RELE---GDLILCDMGEGLPFR---PGTFDGVISIS  120 (270)
T ss_pred             CcEEEEeccCCCcchheecc--CCceEEeecCCHHHHHHHHH--hhhh---cCeeeeecCCCCCCC---CCccceEEEee
Confidence            56899999999999866663  46899999999999999986  2222   2466667654 4444   3899999983 


Q ss_pred             -------C-------cccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCe
Q 026122          154 -------A-------VAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGAS  200 (243)
Q Consensus       154 -------~-------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~  200 (243)
                             +       ...+..|+..++..|++|++.++-.-+....++..+.+...++||.
T Consensus       121 AvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~aGF~  181 (270)
T KOG1541|consen  121 AVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKAGFG  181 (270)
T ss_pred             eeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHhhccC
Confidence                   2       1136778899999999999988877666677777778777788875

>PRK01581 speE spermidine synthase; Validated

Probab=99.32  E-value=8.1e-11  Score=103.49  Aligned_cols=128  Identities=13%  Similarity=0.063  Sum_probs=92.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH-----HHHc--CCCCEEEEEccccccccCCcCCCCce
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHA-----VSLT--QLLNVQIVRGRAETLGKDVSFREQYD  148 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~-----~~~~--~~~~v~~~~~d~~~~~~~~~~~~~fD  148 (243)
                      +.+||+||||+|..+..+.+..+..+|++||+++++++.|++.     ..+.  ..++++++.+|+.++....  .++||
T Consensus       151 PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~--~~~YD  228 (374)
T PRK01581        151 PKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSP--SSLYD  228 (374)
T ss_pred             CCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhc--CCCcc
Confidence            6799999999999776666544457999999999999999962     1112  2346999999998864321  36899


Q ss_pred             EEEEcCccc---------HHHHHHHHccCcccCeEEEEEeCC-Cc-HHHHHHHHHHHHHhCCeeeEEE
Q 026122          149 VAVARAVAE---------MRILAEYCLPLVRVGGLFVAAKGH-DP-QEEVKNSERAVQLMGASLLQLC  205 (243)
Q Consensus       149 ~I~~~~~~~---------~~~~l~~~~~~LkpgG~l~~~~~~-~~-~~~~~~~~~~l~~~g~~~~~~~  205 (243)
                      +|++.....         -.++++.+++.|+|||.+++..+. .. ...+..+.+.+++.++......
T Consensus       229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y~  296 (374)
T PRK01581        229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSYH  296 (374)
T ss_pred             EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEEE
Confidence            999974211         267899999999999998876532 21 2233456777889888665444

>PLN02366 spermidine synthase

Probab=99.32  E-value=1.9e-10  Score=100.11  Aligned_cols=149  Identities=13%  Similarity=0.033  Sum_probs=102.4

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc--CC--CCEEEEEccccccccCCcCCCCceEE
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT--QL--LNVQIVRGRAETLGKDVSFREQYDVA  150 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~--~~v~~~~~d~~~~~~~~~~~~~fD~I  150 (243)
                      .+.+||+||||.|..+..+++..+..+|+.||+++.+++.+++.....  ++  ++++++.+|..++.... ..++||+|
T Consensus        91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~-~~~~yDvI  169 (308)
T PLN02366         91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNA-PEGTYDAI  169 (308)
T ss_pred             CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhc-cCCCCCEE
Confidence            378999999999999888876533468999999999999999987653  23  35999999986653211 02579999


Q ss_pred             EEcCcc--------cHHHHHHHHccCcccCeEEEEEeCC-C-cHHHHHHHHHHHHHhCCeeeEEEEEecCCCCC-ceEEE
Q 026122          151 VARAVA--------EMRILAEYCLPLVRVGGLFVAAKGH-D-PQEEVKNSERAVQLMGASLLQLCSVESQSPFG-QRTAV  219 (243)
Q Consensus       151 ~~~~~~--------~~~~~l~~~~~~LkpgG~l~~~~~~-~-~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~-~r~~v  219 (243)
                      ++....        --.++++.+++.|+|||.++.-.+. + ..+.+..+.+.++......+.......|.-++ .-..+
T Consensus       170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~~~~~~~~i~~tl~~~F~~~v~~~~~~vPsy~~g~w~f~  249 (308)
T PLN02366        170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAESMWLHMDLIEDLIAICRETFKGSVNYAWTTVPTYPSGVIGFV  249 (308)
T ss_pred             EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCCcccchHHHHHHHHHHHHHCCCceeEEEecCCCcCCCceEEE
Confidence            996522        1367899999999999998764432 2 24455666666666643344443334454443 45556


Q ss_pred             EEEee
Q 026122          220 VCLKS  224 (243)
Q Consensus       220 ~~~k~  224 (243)
                      ++.+.
T Consensus       250 ~as~~  254 (308)
T PLN02366        250 LCSKE  254 (308)
T ss_pred             EEECC
Confidence            66554

>PRK03612 spermidine synthase; Provisional

Probab=99.32  E-value=3.1e-11  Score=112.34  Aligned_cols=123  Identities=16%  Similarity=0.130  Sum_probs=93.4

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHH--HH-----cCCCCEEEEEccccccccCCcCCC
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPD-WKVTLLESMNKRCVFLEHAV--SL-----TQLLNVQIVRGRAETLGKDVSFRE  145 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~~~--~~-----~~~~~v~~~~~d~~~~~~~~~~~~  145 (243)
                      +++++|||||||+|..+..+++ ++. .+|++||+|+++++.++++.  ..     .+.++++++++|..+....  ..+
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~-~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~--~~~  372 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLK-YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRK--LAE  372 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHh-CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHh--CCC
Confidence            3478999999999999877775 455 79999999999999999842  22     1224699999999875432  136


Q ss_pred             CceEEEEcCcc---------cHHHHHHHHccCcccCeEEEEEeCC--CcHHHHHHHHHHHHHhCC
Q 026122          146 QYDVAVARAVA---------EMRILAEYCLPLVRVGGLFVAAKGH--DPQEEVKNSERAVQLMGA  199 (243)
Q Consensus       146 ~fD~I~~~~~~---------~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~~~~~l~~~g~  199 (243)
                      +||+|+++...         --.++++.+++.|+|||.+++..+.  ...+.+.++.+.+++.||
T Consensus       373 ~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf  437 (521)
T PRK03612        373 KFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGL  437 (521)
T ss_pred             CCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCC
Confidence            89999997421         1246889999999999998876532  235566778888999999

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=99.31  E-value=1.3e-11  Score=106.76  Aligned_cols=96  Identities=22%  Similarity=0.313  Sum_probs=78.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccccccCCcCCCCceEEEEcC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      +++|||+|||||.+++..|++. ..+|+|||.|.- ++.|++.++.+++.+ |+++++.++++..+   .++.|+|++.-
T Consensus        61 dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~i-a~~a~~iv~~N~~~~ii~vi~gkvEdi~LP---~eKVDiIvSEW  135 (346)
T KOG1499|consen   61 DKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSI-ADFARKIVKDNGLEDVITVIKGKVEDIELP---VEKVDIIVSEW  135 (346)
T ss_pred             CCEEEEcCCCccHHHHHHHHhC-cceEEEEechHH-HHHHHHHHHhcCccceEEEeecceEEEecC---ccceeEEeehh
Confidence            8899999999999999888774 679999999975 499999999999987 99999999998654   27999999953


Q ss_pred             cc-------cHHHHHHHHccCcccCeEEE
Q 026122          155 VA-------EMRILAEYCLPLVRVGGLFV  176 (243)
Q Consensus       155 ~~-------~~~~~l~~~~~~LkpgG~l~  176 (243)
                      ..       -+..++-.=-++|+|||.++
T Consensus       136 MGy~Ll~EsMldsVl~ARdkwL~~~G~i~  164 (346)
T KOG1499|consen  136 MGYFLLYESMLDSVLYARDKWLKEGGLIY  164 (346)
T ss_pred             hhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence            22       23344444447999999977

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=99.29  E-value=1.3e-10  Score=103.52  Aligned_cols=123  Identities=14%  Similarity=0.090  Sum_probs=89.5

Q ss_pred             CeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCc-------------C
Q 026122           77 LKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-------------F  143 (243)
Q Consensus        77 ~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~-------------~  143 (243)
                      .+|||++||+|.+++.+++..  .+|+|||.|+.+++.+++|++.++++|++++++|+.++.....             .
T Consensus       208 ~~vLDl~~G~G~~sl~la~~~--~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~  285 (362)
T PRK05031        208 GDLLELYCGNGNFTLALARNF--RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLK  285 (362)
T ss_pred             CeEEEEeccccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhccccccccccccc
Confidence            579999999999999888663  5899999999999999999999999889999999987421100             0


Q ss_pred             CCCceEEEEcCcc--cHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEEEe
Q 026122          144 REQYDVAVARAVA--EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVE  208 (243)
Q Consensus       144 ~~~fD~I~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~  208 (243)
                      ..+||+|+.....  -.+.+++.+.+   |++.+++..++.+  -.+++.. |.. ||.+.+++.++
T Consensus       286 ~~~~D~v~lDPPR~G~~~~~l~~l~~---~~~ivyvSC~p~t--larDl~~-L~~-gY~l~~v~~~D  345 (362)
T PRK05031        286 SYNFSTIFVDPPRAGLDDETLKLVQA---YERILYISCNPET--LCENLET-LSQ-THKVERFALFD  345 (362)
T ss_pred             CCCCCEEEECCCCCCCcHHHHHHHHc---cCCEEEEEeCHHH--HHHHHHH-HcC-CcEEEEEEEcc
Confidence            1258999996421  13555555544   6777777666522  2233333 333 99999998877

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=99.29  E-value=7.6e-11  Score=101.13  Aligned_cols=98  Identities=19%  Similarity=0.319  Sum_probs=79.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      ++.|||+|||+|+++...|+. ++.+|++||.| +|.+.|++.++.+.+. +|.++.+-++++..+    ++.|+||+..
T Consensus       178 ~kiVlDVGaGSGILS~FAaqA-GA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP----Ek~DviISEP  251 (517)
T KOG1500|consen  178 DKIVLDVGAGSGILSFFAAQA-GAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIELP----EKVDVIISEP  251 (517)
T ss_pred             CcEEEEecCCccHHHHHHHHh-CcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccCc----hhccEEEecc
Confidence            789999999999999777766 56899999998 4889999999988775 499999999998764    7999999964


Q ss_pred             ccc-------HHHHHHHHccCcccCeEEEEEeC
Q 026122          155 VAE-------MRILAEYCLPLVRVGGLFVAAKG  180 (243)
Q Consensus       155 ~~~-------~~~~l~~~~~~LkpgG~l~~~~~  180 (243)
                      ...       ++..+ .+++.|||.|.++-..|
T Consensus       252 MG~mL~NERMLEsYl-~Ark~l~P~GkMfPT~g  283 (517)
T KOG1500|consen  252 MGYMLVNERMLESYL-HARKWLKPNGKMFPTVG  283 (517)
T ss_pred             chhhhhhHHHHHHHH-HHHhhcCCCCcccCccc
Confidence            321       23333 46799999999885444

>PHA03412 putative methyltransferase; Provisional

Probab=99.29  E-value=1.6e-11  Score=101.92  Aligned_cols=90  Identities=14%  Similarity=0.124  Sum_probs=71.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC---CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC---PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~---~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      +.+|||+|||+|.+++.+++..   +..+|+|||+++.+++.|+++..     ++.++++|+.....    .++||+|++
T Consensus        50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~-----~~~~~~~D~~~~~~----~~~FDlIIs  120 (241)
T PHA03412         50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP-----EATWINADALTTEF----DTLFDMAIS  120 (241)
T ss_pred             CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc-----CCEEEEcchhcccc----cCCccEEEE
Confidence            6799999999999998888753   35699999999999999997743     47899999987543    268999999


Q ss_pred             cC--------c--------ccHHHHHHHHccCcccCeE
Q 026122          153 RA--------V--------AEMRILAEYCLPLVRVGGL  174 (243)
Q Consensus       153 ~~--------~--------~~~~~~l~~~~~~LkpgG~  174 (243)
                      |-        .        .....+++.+.+++++|+.
T Consensus       121 NPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~  158 (241)
T PHA03412        121 NPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF  158 (241)
T ss_pred             CCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence            73        0        1256688888887777765

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.28  E-value=5.1e-11  Score=95.05  Aligned_cols=98  Identities=15%  Similarity=0.066  Sum_probs=73.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      ++.+|||+|||+|.++..++..  +.+|+++|+++.+++.++++...  ..+++++++|+.++....   .+||.|+++.
T Consensus        13 ~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~~~~~---~~~d~vi~n~   85 (169)
T smart00650       13 PGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKFDLPK---LQPYKVVGNL   85 (169)
T ss_pred             CcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcCCccc---cCCCEEEECC
Confidence            3679999999999999888866  57999999999999999988754  347999999999886532   4699999985


Q ss_pred             ccc-HHHHHHHHcc--CcccCeEEEEEe
Q 026122          155 VAE-MRILAEYCLP--LVRVGGLFVAAK  179 (243)
Q Consensus       155 ~~~-~~~~l~~~~~--~LkpgG~l~~~~  179 (243)
                      .-. ...++..+.+  .+.++|.+++..
T Consensus        86 Py~~~~~~i~~~l~~~~~~~~~~l~~q~  113 (169)
T smart00650       86 PYNISTPILFKLLEEPPAFRDAVLMVQK  113 (169)
T ss_pred             CcccHHHHHHHHHhcCCCcceEEEEEEH
Confidence            211 1333443332  244777777644

>TIGR03438 probable methyltransferase

Probab=99.27  E-value=2.9e-11  Score=105.19  Aligned_cols=104  Identities=13%  Similarity=-0.009  Sum_probs=75.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcC-CCCEEEEEccccccc-cCCcCC-CCceEEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQ-LLNVQIVRGRAETLG-KDVSFR-EQYDVAV  151 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~-~~~v~~~~~d~~~~~-~~~~~~-~~fD~I~  151 (243)
                      +.+|||+|||+|..+..++...+ +.+|+++|+|++|++.++++.+... -.++.++++|+.+.. ...... +...+++
T Consensus        64 ~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~  143 (301)
T TIGR03438        64 GCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFF  143 (301)
T ss_pred             CCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEE
Confidence            67999999999999988887765 5799999999999999988876532 124788999998742 221100 1122333


Q ss_pred             EcC------cccHHHHHHHHccCcccCeEEEEEe
Q 026122          152 ARA------VAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       152 ~~~------~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      +..      ..+...+++.+.+.|+|||.+++-.
T Consensus       144 ~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~  177 (301)
T TIGR03438       144 PGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGV  177 (301)
T ss_pred             ecccccCCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence            322      2246778999999999999988744

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=99.27  E-value=2.2e-11  Score=99.43  Aligned_cols=100  Identities=16%  Similarity=0.259  Sum_probs=77.3

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccccccCCcCCCCceEEE
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      +.++.+|+|+.||.|..++.+|+..++..|+|+|+++.+++.+++|++.+++++ +.++++|..++..    ...||-|+
T Consensus        99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~----~~~~drvi  174 (200)
T PF02475_consen   99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP----EGKFDRVI  174 (200)
T ss_dssp             --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG-------TT-EEEEE
T ss_pred             CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC----ccccCEEE
Confidence            456899999999999999999986677899999999999999999999999976 8999999999865    27899999


Q ss_pred             EcCcccHHHHHHHHccCcccCeEEE
Q 026122          152 ARAVAEMRILAEYCLPLVRVGGLFV  176 (243)
Q Consensus       152 ~~~~~~~~~~l~~~~~~LkpgG~l~  176 (243)
                      ++....-..++..+.+++++||.+-
T Consensus       175 m~lp~~~~~fl~~~~~~~~~~g~ih  199 (200)
T PF02475_consen  175 MNLPESSLEFLDAALSLLKEGGIIH  199 (200)
T ss_dssp             E--TSSGGGGHHHHHHHEEEEEEEE
T ss_pred             ECChHHHHHHHHHHHHHhcCCcEEE
Confidence            9876666678888999999999864

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=99.26  E-value=3.8e-11  Score=101.17  Aligned_cols=102  Identities=16%  Similarity=0.196  Sum_probs=85.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCc----CCCCceE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVS----FREQYDV  149 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~----~~~~fD~  149 (243)
                      ..+|||||+++|..++.+|... ++++|+.+|.+++..+.|++++++.|+. +|+++.+++.+......    ..++||+
T Consensus        80 ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~  159 (247)
T PLN02589         80 AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDF  159 (247)
T ss_pred             CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccE
Confidence            6799999999999999999875 4689999999999999999999999985 59999999877532100    1258999


Q ss_pred             EEEcCc-ccHHHHHHHHccCcccCeEEEE
Q 026122          150 AVARAV-AEMRILAEYCLPLVRVGGLFVA  177 (243)
Q Consensus       150 I~~~~~-~~~~~~l~~~~~~LkpgG~l~~  177 (243)
                      |+..+. ..+...++.+.++|+|||.+++
T Consensus       160 iFiDadK~~Y~~y~~~~l~ll~~GGviv~  188 (247)
T PLN02589        160 IFVDADKDNYINYHKRLIDLVKVGGVIGY  188 (247)
T ss_pred             EEecCCHHHhHHHHHHHHHhcCCCeEEEE
Confidence            999874 4678888999999999999875

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=99.26  E-value=1.3e-10  Score=94.69  Aligned_cols=122  Identities=11%  Similarity=0.103  Sum_probs=84.6

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccc-cccCCcCCCCceEEEE
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAET-LGKDVSFREQYDVAVA  152 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~~~~~~~~~~fD~I~~  152 (243)
                      +++.+|||+|||+|.++..++.. .+..++|+|+|+++++.+++       .+++++++|+.+ +....  +++||+|++
T Consensus        12 ~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~i~~a~~-------~~~~~~~~d~~~~l~~~~--~~sfD~Vi~   81 (194)
T TIGR02081        12 PPGSRVLDLGCGDGELLALLRDE-KQVRGYGIEIDQDGVLACVA-------RGVNVIQGDLDEGLEAFP--DKSFDYVIL   81 (194)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHhc-cCCcEEEEeCCHHHHHHHHH-------cCCeEEEEEhhhcccccC--CCCcCEEEE
Confidence            34789999999999998777755 35789999999998887753       246788888876 32111  268999999


Q ss_pred             cC----cccHHHHHHHHccCcccCeEEEEEeCC-------------------------------CcHHHHHHHHHHHHHh
Q 026122          153 RA----VAEMRILAEYCLPLVRVGGLFVAAKGH-------------------------------DPQEEVKNSERAVQLM  197 (243)
Q Consensus       153 ~~----~~~~~~~l~~~~~~LkpgG~l~~~~~~-------------------------------~~~~~~~~~~~~l~~~  197 (243)
                      +.    ..+...+++++.+.++++   ++..+.                               .......++.+.++.+
T Consensus        82 ~~~l~~~~d~~~~l~e~~r~~~~~---ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~  158 (194)
T TIGR02081        82 SQTLQATRNPEEILDEMLRVGRHA---IVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGEL  158 (194)
T ss_pred             hhHhHcCcCHHHHHHHHHHhCCeE---EEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHC
Confidence            75    456788888887776543   221100                               0011245567788899


Q ss_pred             CCeeeEEEEEe
Q 026122          198 GASLLQLCSVE  208 (243)
Q Consensus       198 g~~~~~~~~~~  208 (243)
                      ||++++...+.
T Consensus       159 Gf~v~~~~~~~  169 (194)
T TIGR02081       159 NLRILDRAAFD  169 (194)
T ss_pred             CCEEEEEEEec
Confidence            99988876543

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=99.25  E-value=4.3e-11  Score=107.11  Aligned_cols=101  Identities=19%  Similarity=0.267  Sum_probs=86.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  155 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~  155 (243)
                      +.+|||++||+|..++.+|...+..+|+++|+++.+++.+++|++.+++.++++.++|+..+...   .++||+|+++..
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~---~~~fD~V~lDP~  134 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHE---ERKFDVVDIDPF  134 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhh---cCCCCEEEECCC
Confidence            35899999999999999998766569999999999999999999999998888999999875431   257999999876


Q ss_pred             ccHHHHHHHHccCcccCeEEEEEe
Q 026122          156 AEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       156 ~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      .....+++.+.+.+++||.+++..
T Consensus       135 Gs~~~~l~~al~~~~~~gilyvSA  158 (382)
T PRK04338        135 GSPAPFLDSAIRSVKRGGLLCVTA  158 (382)
T ss_pred             CCcHHHHHHHHHHhcCCCEEEEEe
Confidence            666788888788899999999863

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=99.23  E-value=3.4e-10  Score=100.51  Aligned_cols=124  Identities=15%  Similarity=0.102  Sum_probs=89.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC-c---C--------
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-S---F--------  143 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-~---~--------  143 (243)
                      +.+|||+|||+|.+++.++...  .+|+|||+++++++.+++|++.+++.|++++++|+.++.... .   .        
T Consensus       198 ~~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~  275 (353)
T TIGR02143       198 KGDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDL  275 (353)
T ss_pred             CCcEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhcccccccccccc
Confidence            3479999999999999888764  499999999999999999999999988999999998753210 0   0        


Q ss_pred             -CCCceEEEEcCcc--cHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEEEe
Q 026122          144 -REQYDVAVARAVA--EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVE  208 (243)
Q Consensus       144 -~~~fD~I~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~  208 (243)
                       ...||+|+..-..  -...+++.+.+   |++.+++..++.  .-.+++.. |. .+|++.+++.++
T Consensus       276 ~~~~~d~v~lDPPR~G~~~~~l~~l~~---~~~ivYvsC~p~--tlaRDl~~-L~-~~Y~l~~v~~~D  336 (353)
T TIGR02143       276 KSYNCSTIFVDPPRAGLDPDTCKLVQA---YERILYISCNPE--TLKANLEQ-LS-ETHRVERFALFD  336 (353)
T ss_pred             ccCCCCEEEECCCCCCCcHHHHHHHHc---CCcEEEEEcCHH--HHHHHHHH-Hh-cCcEEEEEEEcc
Confidence             0238999996421  23455555544   678877766542  22334333 22 348888888877

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=99.22  E-value=5.4e-11  Score=95.37  Aligned_cols=119  Identities=18%  Similarity=0.183  Sum_probs=77.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC--C-CCEEEEEccccccc-cCCcCCCCceEEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ--L-LNVQIVRGRAETLG-KDVSFREQYDVAV  151 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~-~~v~~~~~d~~~~~-~~~~~~~~fD~I~  151 (243)
                      +.+|||+|||+|..|+.++...+..+|+..|.++ .++.++.|++.++  . .++++..-|+.+-. .......+||+|+
T Consensus        46 ~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~Il  124 (173)
T PF10294_consen   46 GKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVIL  124 (173)
T ss_dssp             TSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSEEE
T ss_pred             CceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCEEE
Confidence            7899999999999999999876678999999999 9999999999887  3 35888887775521 1101125799999


Q ss_pred             EcC----cccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHH
Q 026122          152 ARA----VAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQL  196 (243)
Q Consensus       152 ~~~----~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~  196 (243)
                      +..    ....+.+++.+.++++++|.+++....+ .....++.+.+++
T Consensus       125 asDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~R-~~~~~~F~~~~~k  172 (173)
T PF10294_consen  125 ASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKRR-RKSEQEFFDRLKK  172 (173)
T ss_dssp             EES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-S--TGGCHHHHHH--
T ss_pred             EecccchHHHHHHHHHHHHHHhCCCCEEEEEeCEe-cHHHHHHHHHhhh
Confidence            865    3457899999999999999866655433 2223445555543

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>TIGR00095 RNA methyltransferase, RsmD family

Probab=99.21  E-value=1.9e-10  Score=93.47  Aligned_cols=105  Identities=21%  Similarity=0.141  Sum_probs=78.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCC-CceEEEEc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFRE-QYDVAVAR  153 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~-~fD~I~~~  153 (243)
                      +.+|||++||+|.+++.++.+ ...+|++||.++.+++.+++|++.+++. +++++++|+.+......... .||+|+..
T Consensus        50 g~~vLDLfaGsG~lglea~sr-ga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D  128 (189)
T TIGR00095        50 GAHLLDVFAGSGLLGEEALSR-GAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD  128 (189)
T ss_pred             CCEEEEecCCCcHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence            789999999999999888765 3458999999999999999999999986 59999999966421100012 47888885


Q ss_pred             C---cccHHHHHHHH--ccCcccCeEEEEEeCC
Q 026122          154 A---VAEMRILAEYC--LPLVRVGGLFVAAKGH  181 (243)
Q Consensus       154 ~---~~~~~~~l~~~--~~~LkpgG~l~~~~~~  181 (243)
                      .   ......+++.+  ..+|+++|.+++.+..
T Consensus       129 PPy~~~~~~~~l~~l~~~~~l~~~~iiv~E~~~  161 (189)
T TIGR00095       129 PPFFNGALQALLELCENNWILEDTVLIVVEEDR  161 (189)
T ss_pred             cCCCCCcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence            3   22345555544  3578999998887654

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=99.21  E-value=8.9e-12  Score=101.71  Aligned_cols=141  Identities=18%  Similarity=0.179  Sum_probs=95.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~-  154 (243)
                      -.++||+|||||..+..+..+  ..+++|||+|++|++.|.+.-    +- =.+.+++...+... ...++||+|++.. 
T Consensus       126 F~~~lDLGCGTGL~G~~lR~~--a~~ltGvDiS~nMl~kA~eKg----~Y-D~L~~Aea~~Fl~~-~~~er~DLi~AaDV  197 (287)
T COG4976         126 FRRMLDLGCGTGLTGEALRDM--ADRLTGVDISENMLAKAHEKG----LY-DTLYVAEAVLFLED-LTQERFDLIVAADV  197 (287)
T ss_pred             cceeeecccCcCcccHhHHHH--HhhccCCchhHHHHHHHHhcc----ch-HHHHHHHHHHHhhh-ccCCcccchhhhhH
Confidence            369999999999998777655  368999999999999886642    11 13444454443321 1136899999976 


Q ss_pred             ---cccHHHHHHHHccCcccCeEEEEEeC--C-Cc------HHHH----HHHHHHHHHhCCeeeEEEEEecCCCC---Cc
Q 026122          155 ---VAEMRILAEYCLPLVRVGGLFVAAKG--H-DP------QEEV----KNSERAVQLMGASLLQLCSVESQSPF---GQ  215 (243)
Q Consensus       155 ---~~~~~~~l~~~~~~LkpgG~l~~~~~--~-~~------~~~~----~~~~~~l~~~g~~~~~~~~~~~~~~~---~~  215 (243)
                         ...++.++-.+...|+|||.+.|+.-  . +.      ....    .-+...+...|+.+++++........   -.
T Consensus       198 l~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~ttiR~d~g~pv~  277 (287)
T COG4976         198 LPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIEDTTIRRDAGEPVP  277 (287)
T ss_pred             HHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeecccchhhcCCCCC
Confidence               34789999999999999999998752  1 11      1111    11345677999999998876644322   25


Q ss_pred             eEEEEEEee
Q 026122          216 RTAVVCLKS  224 (243)
Q Consensus       216 r~~v~~~k~  224 (243)
                      -++++++|+
T Consensus       278 G~L~iark~  286 (287)
T COG4976         278 GILVIARKK  286 (287)
T ss_pred             CceEEEecC
Confidence            566666654

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.20  E-value=3.4e-10  Score=90.86  Aligned_cols=124  Identities=14%  Similarity=0.090  Sum_probs=86.0

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEE
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      ++++.+|||+|||.|.+...|... .++++.|||++++.+..+.+    .   .+.++++|+++--.. -.+++||+|+.
T Consensus        11 I~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~----r---Gv~Viq~Dld~gL~~-f~d~sFD~VIl   81 (193)
T PF07021_consen   11 IEPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVA----R---GVSVIQGDLDEGLAD-FPDQSFDYVIL   81 (193)
T ss_pred             cCCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHH----c---CCCEEECCHHHhHhh-CCCCCccEEeh
Confidence            356999999999999997677654 57999999999986654433    2   367999999873221 11378999998


Q ss_pred             cC----cccHHHHHHHHccCcccCeEEEEEeCC-------------------------------CcHHHHHHHHHHHHHh
Q 026122          153 RA----VAEMRILAEYCLPLVRVGGLFVAAKGH-------------------------------DPQEEVKNSERAVQLM  197 (243)
Q Consensus       153 ~~----~~~~~~~l~~~~~~LkpgG~l~~~~~~-------------------------------~~~~~~~~~~~~l~~~  197 (243)
                      +.    +..++.+++++.|+   |...++.-..                               -.--.++++.+.+++.
T Consensus        82 sqtLQ~~~~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~  158 (193)
T PF07021_consen   82 SQTLQAVRRPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCREL  158 (193)
T ss_pred             HhHHHhHhHHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHC
Confidence            64    45678888877555   4454443211                               0112356788888899


Q ss_pred             CCeeeEEEEEe
Q 026122          198 GASLLQLCSVE  208 (243)
Q Consensus       198 g~~~~~~~~~~  208 (243)
                      |+.+++...+.
T Consensus       159 ~i~I~~~~~~~  169 (193)
T PF07021_consen  159 GIRIEERVFLD  169 (193)
T ss_pred             CCEEEEEEEEc
Confidence            99888765544

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=99.20  E-value=1.4e-10  Score=96.45  Aligned_cols=103  Identities=14%  Similarity=0.005  Sum_probs=78.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHH------------HHcCCCCEEEEEccccccccCCc
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAV------------SLTQLLNVQIVRGRAETLGKDVS  142 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~------------~~~~~~~v~~~~~d~~~~~~~~~  142 (243)
                      ++.+||+.|||.|..+..||..  +.+|+|+|+|+.+++.+.+..            ....-.+++++++|+.++.....
T Consensus        43 ~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~  120 (226)
T PRK13256         43 DSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIAN  120 (226)
T ss_pred             CCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccc
Confidence            3689999999999999999865  689999999999998875421            01112358999999999864211


Q ss_pred             CCCCceEEEEcC----c--ccHHHHHHHHccCcccCeEEEEEe
Q 026122          143 FREQYDVAVARA----V--AEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       143 ~~~~fD~I~~~~----~--~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      ..++||+|+-++    +  ....+..+.+.++|+|||.++++.
T Consensus       121 ~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~  163 (226)
T PRK13256        121 NLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLV  163 (226)
T ss_pred             ccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence            125799999764    2  246889999999999999987654

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=99.18  E-value=2.6e-10  Score=101.64  Aligned_cols=129  Identities=14%  Similarity=0.164  Sum_probs=98.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC--CEEEEEccccccccCCc-CCCCceEEEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL--NVQIVRGRAETLGKDVS-FREQYDVAVA  152 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~~~~~~-~~~~fD~I~~  152 (243)
                      |++|||+.|=||..++..|.. ++.+||+||.|..+++.|++|.+.+|+.  .+.++++|+.++..... ...+||+|+.
T Consensus       218 GkrvLNlFsYTGgfSv~Aa~g-GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil  296 (393)
T COG1092         218 GKRVLNLFSYTGGFSVHAALG-GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL  296 (393)
T ss_pred             CCeEEEecccCcHHHHHHHhc-CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEE
Confidence            899999999999999877744 3449999999999999999999999985  38999999987643211 1248999999


Q ss_pred             cC-------------cccHHHHHHHHccCcccCeEEEEEeCCCc--HHHH-HHHHHHHHHhCCeeeEEE
Q 026122          153 RA-------------VAEMRILAEYCLPLVRVGGLFVAAKGHDP--QEEV-KNSERAVQLMGASLLQLC  205 (243)
Q Consensus       153 ~~-------------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~--~~~~-~~~~~~l~~~g~~~~~~~  205 (243)
                      ..             ..++..++..+.++|+|||.+++.++...  .+.+ ..+.+.....|.....+.
T Consensus       297 DPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~~i~~a~~~~~~~~~~~~  365 (393)
T COG1092         297 DPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLEIIARAAAAAGRRAQEIE  365 (393)
T ss_pred             CCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHHHHHHHHHHHHhcCCcEEEee
Confidence            52             23688999999999999999998885432  3332 334455556665555443

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=99.18  E-value=4.4e-10  Score=97.76  Aligned_cols=138  Identities=14%  Similarity=0.070  Sum_probs=107.5

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEc-cccccccCCcCCCCceEEE
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRG-RAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~fD~I~  151 (243)
                      ..+|..|||=-||||.+.+.....  +++++|+|++..|++-++.|.+..++.+..+... |+..++...   .++|.|+
T Consensus       195 v~~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~---~~vdaIa  269 (347)
T COG1041         195 VKRGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRD---NSVDAIA  269 (347)
T ss_pred             cccCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCC---CccceEE
Confidence            456889999999999987666644  7899999999999999999999999888777776 999988542   4699999


Q ss_pred             EcC---------ccc----HHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEEEecCCCCCceEE
Q 026122          152 ARA---------VAE----MRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTA  218 (243)
Q Consensus       152 ~~~---------~~~----~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~  218 (243)
                      +..         ...    +.++++.+.+.|++||++++......       ...+...||.++...... ......|.+
T Consensus       270 tDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~~~-------~~~~~~~~f~v~~~~~~~-~H~sLtR~i  341 (347)
T COG1041         270 TDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPRDP-------RHELEELGFKVLGRFTMR-VHGSLTRVI  341 (347)
T ss_pred             ecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCCcc-------hhhHhhcCceEEEEEEEe-ecCceEEEE
Confidence            952         111    68899999999999999998776322       233457899888776544 344556777


Q ss_pred             EEEEe
Q 026122          219 VVCLK  223 (243)
Q Consensus       219 v~~~k  223 (243)
                      .++++
T Consensus       342 ~v~~~  346 (347)
T COG1041         342 YVVRK  346 (347)
T ss_pred             EEEec
Confidence            77665

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=99.18  E-value=1.4e-10  Score=93.69  Aligned_cols=124  Identities=15%  Similarity=0.220  Sum_probs=88.0

Q ss_pred             HHHHHHhHhhhcccCCCcccccCccCCCCCCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC
Q 026122           44 NEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ  123 (243)
Q Consensus        44 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~  123 (243)
                      .+..++.+++.+... .++             +.+|||+.||||.+|+... .+++.+|+.||.|++++..+++|++.++
T Consensus        25 ~drvrealFniL~~~-~~~-------------g~~vLDLFaGSGalGlEAL-SRGA~~v~fVE~~~~a~~~i~~N~~~l~   89 (183)
T PF03602_consen   25 TDRVREALFNILQPR-NLE-------------GARVLDLFAGSGALGLEAL-SRGAKSVVFVEKNRKAIKIIKKNLEKLG   89 (183)
T ss_dssp             SHHHHHHHHHHHHCH--HT-------------T-EEEETT-TTSHHHHHHH-HTT-SEEEEEES-HHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHhccc-ccC-------------CCeEEEcCCccCccHHHHH-hcCCCeEEEEECCHHHHHHHHHHHHHhC
Confidence            456677777766543 122             8899999999999997644 5567899999999999999999999999


Q ss_pred             CCC-EEEEEccccccccCC-cCCCCceEEEEcC---ccc-HHHHHHHHc--cCcccCeEEEEEeCCC
Q 026122          124 LLN-VQIVRGRAETLGKDV-SFREQYDVAVARA---VAE-MRILAEYCL--PLVRVGGLFVAAKGHD  182 (243)
Q Consensus       124 ~~~-v~~~~~d~~~~~~~~-~~~~~fD~I~~~~---~~~-~~~~l~~~~--~~LkpgG~l~~~~~~~  182 (243)
                      ..+ ++++++|........ ....+||+|++..   ... +..+++.+.  .+|+++|.+++.+...
T Consensus        90 ~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~  156 (183)
T PF03602_consen   90 LEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEHSKK  156 (183)
T ss_dssp             -GGGEEEEESSHHHHHHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred             CCcceeeeccCHHHHHHhhcccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence            875 999999965533210 1136899999974   223 477788776  8999999999988543

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=99.18  E-value=8.7e-10  Score=90.83  Aligned_cols=99  Identities=13%  Similarity=0.178  Sum_probs=75.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC-----CC-------------------------
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ-----LL-------------------------  125 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-----~~-------------------------  125 (243)
                      +..+|||||-+|.+++.+|+.+....|+|+||++..+..|+++++...     +.                         
T Consensus        59 ~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~t  138 (288)
T KOG2899|consen   59 PKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAFT  138 (288)
T ss_pred             cceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccccc
Confidence            778999999999999999999987899999999999999999876421     11                         


Q ss_pred             -----CEEEE-------EccccccccCCcCCCCceEEEEcC----------cccHHHHHHHHccCcccCeEEEEEe
Q 026122          126 -----NVQIV-------RGRAETLGKDVSFREQYDVAVARA----------VAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       126 -----~v~~~-------~~d~~~~~~~~~~~~~fD~I~~~~----------~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                           |+.+.       ..|+.++     ....||+|+|-.          ...+..++..+.++|.|||+|+++-
T Consensus       139 ~~~p~n~~f~~~n~vle~~dfl~~-----~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEP  209 (288)
T KOG2899|consen  139 TDFPDNVWFQKENYVLESDDFLDM-----IQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEP  209 (288)
T ss_pred             ccCCcchhcccccEEEecchhhhh-----ccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcC
Confidence                 11111       1122211     125799999843          2358999999999999999988754

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=99.18  E-value=2.1e-10  Score=98.42  Aligned_cols=132  Identities=12%  Similarity=0.133  Sum_probs=89.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC--CEEEEEccccccccCCcCCCCceEEEE
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL--NVQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      .+++|||+-|=||..++..+. .++.+|++||.|..+++.+++|++.++++  ++++++.|+.+........++||+||+
T Consensus       123 ~gkrvLnlFsYTGgfsv~Aa~-gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl  201 (286)
T PF10672_consen  123 KGKRVLNLFSYTGGFSVAAAA-GGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL  201 (286)
T ss_dssp             TTCEEEEET-TTTHHHHHHHH-TTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred             CCCceEEecCCCCHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence            488999999999999977663 34568999999999999999999999974  599999999874321111268999999


Q ss_pred             cC----------cccHHHHHHHHccCcccCeEEEEEeCC-CcHHHHHHHHHHHHHhCCeeeEEEEEec
Q 026122          153 RA----------VAEMRILAEYCLPLVRVGGLFVAAKGH-DPQEEVKNSERAVQLMGASLLQLCSVES  209 (243)
Q Consensus       153 ~~----------~~~~~~~l~~~~~~LkpgG~l~~~~~~-~~~~~~~~~~~~l~~~g~~~~~~~~~~~  209 (243)
                      ..          ..++..++..+.++|+|||.+++..+. ....  ..+.+.+.+.+-++..++++..
T Consensus       202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~~--~~l~~~~~~~a~~~~~~~~~~~  267 (286)
T PF10672_consen  202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHHISP--DFLLEAVAEAAREVEFIERLGQ  267 (286)
T ss_dssp             --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TTS-H--HHHHHHHHHHHHHCEEEEEEE-
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcccCH--HHHHHHHHHhCccceEeeeecc
Confidence            53          225788999999999999998877643 2222  2234444444434444444443

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=99.17  E-value=4e-10  Score=93.50  Aligned_cols=130  Identities=17%  Similarity=0.093  Sum_probs=89.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH------------cCCCCEEEEEccccccccCCc
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSL------------TQLLNVQIVRGRAETLGKDVS  142 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~------------~~~~~v~~~~~d~~~~~~~~~  142 (243)
                      ++.+||..|||.|.-...||..  +.+|+|+|+|+.+++.+.+....            ....+|+++++|+.++.... 
T Consensus        37 ~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~-  113 (218)
T PF05724_consen   37 PGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPED-  113 (218)
T ss_dssp             TSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSC-
T ss_pred             CCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhh-
Confidence            3679999999999999899965  68999999999999887332211            01235799999999987542 


Q ss_pred             CCCCceEEEEcC------cccHHHHHHHHccCcccCeEEE--EEe-------CCCcHHHHHHHHHHHHHhCCeeeEEEEE
Q 026122          143 FREQYDVAVARA------VAEMRILAEYCLPLVRVGGLFV--AAK-------GHDPQEEVKNSERAVQLMGASLLQLCSV  207 (243)
Q Consensus       143 ~~~~fD~I~~~~------~~~~~~~l~~~~~~LkpgG~l~--~~~-------~~~~~~~~~~~~~~l~~~g~~~~~~~~~  207 (243)
                       .++||+|+=++      .....+..+.+.++|+|||.++  ...       |+-..-...++.+.+. .+|++..++..
T Consensus       114 -~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~-~~f~i~~l~~~  191 (218)
T PF05724_consen  114 -VGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFG-PGFEIEELEEE  191 (218)
T ss_dssp             -HHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHT-TTEEEEEEEEE
T ss_pred             -cCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhc-CCcEEEEEecc
Confidence             25799999864      2357999999999999999933  322       1111223345555555 67888777764


Q ss_pred             ec
Q 026122          208 ES  209 (243)
Q Consensus       208 ~~  209 (243)
                      +.
T Consensus       192 ~~  193 (218)
T PF05724_consen  192 DS  193 (218)
T ss_dssp             E-
T ss_pred             cc
Confidence            43

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=99.17  E-value=2.3e-10  Score=104.30  Aligned_cols=97  Identities=19%  Similarity=0.231  Sum_probs=74.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC----CCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC----PDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVA  150 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~----~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I  150 (243)
                      +..|+|||||+|.++...+++.    ...+|+|||.|+.++..+++.++.+++. +|+++++|++++..+    .++|+|
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp----ekvDII  262 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELP----EKVDII  262 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHS----S-EEEE
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCC----CceeEE
Confidence            4679999999999975554432    3579999999999998888887888885 599999999998764    689999


Q ss_pred             EEcCc------ccHHHHHHHHccCcccCeEEE
Q 026122          151 VARAV------AEMRILAEYCLPLVRVGGLFV  176 (243)
Q Consensus       151 ~~~~~------~~~~~~l~~~~~~LkpgG~l~  176 (243)
                      +|.-+      .-..+.+..+.+.|||||+++
T Consensus       263 VSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I  294 (448)
T PF05185_consen  263 VSELLGSFGDNELSPECLDAADRFLKPDGIMI  294 (448)
T ss_dssp             EE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred             EEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence            99532      124567888999999999977

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=99.17  E-value=7.5e-11  Score=97.04  Aligned_cols=102  Identities=15%  Similarity=0.190  Sum_probs=77.0

Q ss_pred             CeEEEEcCCCChHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcccccccc-CCcCCCCceEEEEc
Q 026122           77 LKLVDVGTGAGLPGLVLAIACPD--WKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK-DVSFREQYDVAVAR  153 (243)
Q Consensus        77 ~~VLDiGcG~G~~~~~la~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~~~fD~I~~~  153 (243)
                      .+||+||||.|.....+.+-.++  .+|.++|.|+.+++..+++..... .++.....|+..-.. .+...+++|+|++.
T Consensus        73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e-~~~~afv~Dlt~~~~~~~~~~~svD~it~I  151 (264)
T KOG2361|consen   73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE-SRVEAFVWDLTSPSLKEPPEEGSVDIITLI  151 (264)
T ss_pred             hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch-hhhcccceeccchhccCCCCcCccceEEEE
Confidence            38999999999988888877766  899999999999999988876544 234445555544221 11224789998873


Q ss_pred             ----Cc--ccHHHHHHHHccCcccCeEEEEEe
Q 026122          154 ----AV--AEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       154 ----~~--~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                          ++  ......++.+.++|||||.+++..
T Consensus       152 FvLSAi~pek~~~a~~nl~~llKPGG~llfrD  183 (264)
T KOG2361|consen  152 FVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRD  183 (264)
T ss_pred             EEEeccChHHHHHHHHHHHHHhCCCcEEEEee
Confidence                33  257889999999999999999864

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=99.17  E-value=7.4e-10  Score=101.40  Aligned_cols=125  Identities=18%  Similarity=0.171  Sum_probs=97.1

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEE
Q 026122           72 SCNSNLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVA  150 (243)
Q Consensus        72 ~~~~~~~VLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I  150 (243)
                      ..+++.+|||+|||+|.-+..+|.... ...|+++|+++..++.+++++++.|+.|+.+.+.|...+...  ..+.||.|
T Consensus       110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~--~~~~fD~I  187 (470)
T PRK11933        110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAA--LPETFDAI  187 (470)
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhh--chhhcCeE
Confidence            346789999999999999989887653 469999999999999999999999999999999998876432  13679999


Q ss_pred             EEcCcc--------------------------cHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHH-HHHHHhC
Q 026122          151 VARAVA--------------------------EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSE-RAVQLMG  198 (243)
Q Consensus       151 ~~~~~~--------------------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~-~~l~~~g  198 (243)
                      +..+..                          -..++++.+.+.|||||+++...+.-..+|-++.. ..+++++
T Consensus       188 LvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~vV~~~L~~~~  262 (470)
T PRK11933        188 LLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCLWLKETYP  262 (470)
T ss_pred             EEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHHHHHHHHHHHCC
Confidence            974310                          13778899999999999998877665555544443 3344553

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=99.16  E-value=2.5e-10  Score=95.03  Aligned_cols=104  Identities=13%  Similarity=0.064  Sum_probs=88.9

Q ss_pred             CeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCcc
Q 026122           77 LKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAVA  156 (243)
Q Consensus        77 ~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~  156 (243)
                      ..+||||||.|...+.+|+..|+..++|||+....+..+.+.+.+.+++|+.+++.|+.++......+++.|-|+.+-..
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD  129 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD  129 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence            47999999999999999999999999999999999999999999999988999999998864332223589999885311


Q ss_pred             ------------cHHHHHHHHccCcccCeEEEEEeC
Q 026122          157 ------------EMRILAEYCLPLVRVGGLFVAAKG  180 (243)
Q Consensus       157 ------------~~~~~l~~~~~~LkpgG~l~~~~~  180 (243)
                                  ....+++.+.+.|+|||.+.+-+.
T Consensus       130 PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD  165 (227)
T COG0220         130 PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATD  165 (227)
T ss_pred             CCCCccccccccCCHHHHHHHHHHccCCCEEEEEec
Confidence                        258899999999999999998665

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.14  E-value=1.9e-10  Score=87.64  Aligned_cols=74  Identities=15%  Similarity=0.183  Sum_probs=63.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      |++++|+|||+|.+++..+ ....-.|+|+|+++++++.+++|++...++ +.++++|+.+.....   +.||.++.|.
T Consensus        49 gkkl~DLgcgcGmLs~a~s-m~~~e~vlGfDIdpeALEIf~rNaeEfEvq-idlLqcdildle~~~---g~fDtaviNp  122 (185)
T KOG3420|consen   49 GKKLKDLGCGCGMLSIAFS-MPKNESVLGFDIDPEALEIFTRNAEEFEVQ-IDLLQCDILDLELKG---GIFDTAVINP  122 (185)
T ss_pred             CcchhhhcCchhhhHHHhh-cCCCceEEeeecCHHHHHHHhhchHHhhhh-hheeeeeccchhccC---CeEeeEEecC
Confidence            8899999999999985555 334568999999999999999999998884 799999999987643   7799999974

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=99.13  E-value=2.6e-09  Score=84.49  Aligned_cols=121  Identities=14%  Similarity=0.109  Sum_probs=94.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      ..-++|||||+|..+-.+++.. |.....++|+|+++++...+.++.++.. ++.++.|+.+-...    ++.|+++.|-
T Consensus        44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~-~~~V~tdl~~~l~~----~~VDvLvfNP  118 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVH-IDVVRTDLLSGLRN----ESVDVLVFNP  118 (209)
T ss_pred             ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCc-cceeehhHHhhhcc----CCccEEEECC
Confidence            5679999999999998888765 5678999999999999999999988874 88999998875442    7899999972


Q ss_pred             ------------------c-------ccHHHHHHHHccCcccCeEEEEEeC-CCcHHHHHHHHHHHHHhCCeeeEE
Q 026122          155 ------------------V-------AEMRILAEYCLPLVRVGGLFVAAKG-HDPQEEVKNSERAVQLMGASLLQL  204 (243)
Q Consensus       155 ------------------~-------~~~~~~l~~~~~~LkpgG~l~~~~~-~~~~~~~~~~~~~l~~~g~~~~~~  204 (243)
                                        +       .-...++..+..+|.|.|.+++..- .+..+++   .+.++..|+.....
T Consensus       119 PYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei---~k~l~~~g~~~~~~  191 (209)
T KOG3191|consen  119 PYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEI---LKILEKKGYGVRIA  191 (209)
T ss_pred             CcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHH---HHHHhhcccceeEE
Confidence                              0       0157778888889999999998763 3444444   44566888865543

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=99.13  E-value=2.2e-09  Score=93.92  Aligned_cols=124  Identities=15%  Similarity=0.158  Sum_probs=99.7

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccccccCCcCCCCceEE
Q 026122           72 SCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVA  150 (243)
Q Consensus        72 ~~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~fD~I  150 (243)
                      ...+|.+|+|.-||-|.+++.+|... ..+|+++|+|+.+++++++|++.|++.+ ++.+++|..++....   +.+|-|
T Consensus       185 ~v~~GE~V~DmFAGVGpfsi~~Ak~g-~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~---~~aDrI  260 (341)
T COG2520         185 LVKEGETVLDMFAGVGPFSIPIAKKG-RPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPEL---GVADRI  260 (341)
T ss_pred             hhcCCCEEEEccCCcccchhhhhhcC-CceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhcc---ccCCEE
Confidence            34459999999999999999999763 4459999999999999999999999987 999999999987653   679999


Q ss_pred             EEcCcccHHHHHHHHccCcccCeEEEEEeCCCcHH----HHHHHHHHHHHhCC
Q 026122          151 VARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQE----EVKNSERAVQLMGA  199 (243)
Q Consensus       151 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~----~~~~~~~~l~~~g~  199 (243)
                      +++....-..++..+.+.+++||.+-+..-.....    ....+.......|.
T Consensus       261 im~~p~~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~~~~~~i~~~~~~~~~  313 (341)
T COG2520         261 IMGLPKSAHEFLPLALELLKDGGIIHYYEFVPEDDIEERPEKRIKSAARKGGY  313 (341)
T ss_pred             EeCCCCcchhhHHHHHHHhhcCcEEEEEeccchhhcccchHHHHHHHHhhccC
Confidence            99988777888999999999999987766322222    23444454455554

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=99.11  E-value=1.3e-09  Score=88.64  Aligned_cols=129  Identities=14%  Similarity=0.109  Sum_probs=93.4

Q ss_pred             eEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCE-EEEEccccccccCCc-----CCCCceEEE
Q 026122           78 KLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNV-QIVRGRAETLGKDVS-----FREQYDVAV  151 (243)
Q Consensus        78 ~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~d~~~~~~~~~-----~~~~fD~I~  151 (243)
                      +|||||||||..+..+|..+|..+-.-.|.++......+..+...+++|+ ..+.-|+.+-.-...     ..++||+|+
T Consensus        28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~  107 (204)
T PF06080_consen   28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF  107 (204)
T ss_pred             eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence            59999999999999999999999999999999988777887888787763 344455554311110     135899999


Q ss_pred             EcC------cccHHHHHHHHccCcccCeEEEEEeCC-----Cc-------------------HHHHHHHHHHHHHhCCee
Q 026122          152 ARA------VAEMRILAEYCLPLVRVGGLFVAAKGH-----DP-------------------QEEVKNSERAVQLMGASL  201 (243)
Q Consensus       152 ~~~------~~~~~~~l~~~~~~LkpgG~l~~~~~~-----~~-------------------~~~~~~~~~~l~~~g~~~  201 (243)
                      +.+      ....+.+++.+.++|++||.|+++-..     .+                   -.++.++.+.....|+..
T Consensus       108 ~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL~l  187 (204)
T PF06080_consen  108 CINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGLEL  187 (204)
T ss_pred             ehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCCcc
Confidence            854      335688999999999999998875321     11                   112344556666888877


Q ss_pred             eEEEE
Q 026122          202 LQLCS  206 (243)
Q Consensus       202 ~~~~~  206 (243)
                      .++..
T Consensus       188 ~~~~~  192 (204)
T PF06080_consen  188 EEDID  192 (204)
T ss_pred             Ccccc
Confidence            76543

The function of this family is unknown.

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=99.08  E-value=9.4e-11  Score=96.49  Aligned_cols=98  Identities=16%  Similarity=0.087  Sum_probs=71.0

Q ss_pred             CeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122           77 LKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAVARA-  154 (243)
Q Consensus        77 ~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~-  154 (243)
                      ..++|+|||+|.-++.+|..+  .+|+|+|+|+.|++.+++.-...-. ........+..++...   +++.|+|++.. 
T Consensus        35 ~~a~DvG~G~Gqa~~~iae~~--k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~---e~SVDlI~~Aqa  109 (261)
T KOG3010|consen   35 RLAWDVGTGNGQAARGIAEHY--KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGG---EESVDLITAAQA  109 (261)
T ss_pred             ceEEEeccCCCcchHHHHHhh--hhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCC---Ccceeeehhhhh
Confidence            379999999998777777664  4899999999999988765432222 1244444555555433   38999999853 


Q ss_pred             --cccHHHHHHHHccCcccCeEEEEEe
Q 026122          155 --VAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       155 --~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                        +-+++++.+.+.++||+.|.++..-
T Consensus       110 ~HWFdle~fy~~~~rvLRk~Gg~iavW  136 (261)
T KOG3010|consen  110 VHWFDLERFYKEAYRVLRKDGGLIAVW  136 (261)
T ss_pred             HHhhchHHHHHHHHHHcCCCCCEEEEE
Confidence              3488999999999999877444433

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=99.07  E-value=6.5e-09  Score=83.38  Aligned_cols=124  Identities=19%  Similarity=0.234  Sum_probs=90.0

Q ss_pred             HHHHHHhHhhhcccCCCcccccCccCCCCCCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC
Q 026122           44 NEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ  123 (243)
Q Consensus        44 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~  123 (243)
                      .+..++.+++.+... .++             +.++||+-+|||.+++... .+++.+++.||.|.+++..+++|++.++
T Consensus        26 ~drVREalFNil~~~-~i~-------------g~~~LDlFAGSGaLGlEAl-SRGA~~~~~vE~~~~a~~~l~~N~~~l~   90 (187)
T COG0742          26 TDRVREALFNILAPD-EIE-------------GARVLDLFAGSGALGLEAL-SRGAARVVFVEKDRKAVKILKENLKALG   90 (187)
T ss_pred             chHHHHHHHHhcccc-ccC-------------CCEEEEecCCccHhHHHHH-hCCCceEEEEecCHHHHHHHHHHHHHhC
Confidence            455566666665432 233             8999999999999997655 5567899999999999999999999999


Q ss_pred             CC-CEEEEEccccccccCCcCCCCceEEEEcC-----cccHHHHHHH--HccCcccCeEEEEEeCCC
Q 026122          124 LL-NVQIVRGRAETLGKDVSFREQYDVAVARA-----VAEMRILAEY--CLPLVRVGGLFVAAKGHD  182 (243)
Q Consensus       124 ~~-~v~~~~~d~~~~~~~~~~~~~fD~I~~~~-----~~~~~~~l~~--~~~~LkpgG~l~~~~~~~  182 (243)
                      +. +++++..|...+.......++||+|+...     ..+....+..  -..+|+|+|.+++.....
T Consensus        91 ~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~  157 (187)
T COG0742          91 LEGEARVLRNDALRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDKD  157 (187)
T ss_pred             CccceEEEeecHHHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence            64 58999999885532221123599999963     2222222222  457899999999988754

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=99.05  E-value=2.9e-09  Score=85.79  Aligned_cols=123  Identities=12%  Similarity=0.058  Sum_probs=86.4

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCE---------EEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccccccCCcC
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWK---------VTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSF  143 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~---------v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~  143 (243)
                      +++..|||--||+|.+.+..|....+..         ++|+|+++++++.+++|++..++.+ +.+.+.|+.+++..   
T Consensus        27 ~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~---  103 (179)
T PF01170_consen   27 RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLP---  103 (179)
T ss_dssp             -TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGT---
T ss_pred             CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccc---
Confidence            3478999999999999988887766655         9999999999999999999999865 99999999999843   


Q ss_pred             CCCceEEEEcCc------------ccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEE
Q 026122          144 REQYDVAVARAV------------AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCS  206 (243)
Q Consensus       144 ~~~fD~I~~~~~------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~  206 (243)
                      .+++|.|+++..            .-+..+++.+.+++++ ..+++..+...   +   .+.+...++......+
T Consensus       104 ~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~~~~~---~---~~~~~~~~~~~~~~~~  171 (179)
T PF01170_consen  104 DGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTTSNRE---L---EKALGLKGWRKRKLYN  171 (179)
T ss_dssp             TSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEESCCC---H---HHHHTSTTSEEEEEEE
T ss_pred             cCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEECCHH---H---HHHhcchhhceEEEEE
Confidence            268999999730            1256788899999999 44444444322   2   2333355665554443

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PLN02823 spermine synthase

Probab=99.05  E-value=9.4e-09  Score=90.47  Aligned_cols=145  Identities=14%  Similarity=0.137  Sum_probs=98.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC----CCCEEEEEccccccccCCcCCCCceEEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ----LLNVQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      ..+||.||+|.|..+..+.+..+..+|+.||++++.++.+++.....+    -++++++.+|...+...  ..++||+|+
T Consensus       104 pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~--~~~~yDvIi  181 (336)
T PLN02823        104 PKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEK--RDEKFDVII  181 (336)
T ss_pred             CCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhh--CCCCccEEE
Confidence            679999999999988777765556799999999999999999875432    24699999999886432  136899999


Q ss_pred             EcCccc----------HHHHHH-HHccCcccCeEEEEEeCCC----cHHHHHHHHHHHHHhCCeeeEEEEEecCCCCCce
Q 026122          152 ARAVAE----------MRILAE-YCLPLVRVGGLFVAAKGHD----PQEEVKNSERAVQLMGASLLQLCSVESQSPFGQR  216 (243)
Q Consensus       152 ~~~~~~----------~~~~l~-~~~~~LkpgG~l~~~~~~~----~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r  216 (243)
                      +.....          -.++++ .+++.|+|||.+++..+..    ..+....+.+.++.. |..+.......|.-...-
T Consensus       182 ~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~~v-F~~v~~y~~~vPsf~~~w  260 (336)
T PLN02823        182 GDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLRQV-FKYVVPYTAHVPSFADTW  260 (336)
T ss_pred             ecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEeccCcchhccHHHHHHHHHHHHHh-CCCEEEEEeecCCCCCce
Confidence            964210          256787 8999999999987755431    233344445555443 444444444444433334


Q ss_pred             EEEEEEe
Q 026122          217 TAVVCLK  223 (243)
Q Consensus       217 ~~v~~~k  223 (243)
                      ..+++.+
T Consensus       261 ~f~~aS~  267 (336)
T PLN02823        261 GWVMASD  267 (336)
T ss_pred             EEEEEeC
Confidence            4445444

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=99.04  E-value=1.6e-09  Score=92.25  Aligned_cols=70  Identities=23%  Similarity=0.244  Sum_probs=60.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      +.+|||||||+|.++..+++.  +.+|+++|+++.+++.++++...  ..+++++++|+.+++.     ..||.|++|-
T Consensus        30 ~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~~~~~-----~~~d~Vv~Nl   99 (258)
T PRK14896         30 GDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDALKVDL-----PEFNKVVSNL   99 (258)
T ss_pred             cCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccccCCc-----hhceEEEEcC
Confidence            789999999999999999876  46999999999999999887754  3579999999988753     3589999984

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=99.03  E-value=8e-09  Score=93.70  Aligned_cols=128  Identities=16%  Similarity=0.108  Sum_probs=96.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      ++.+|||+-||.|.+++.+|..  ..+|+|+|+++++++.|++|++.+++.|+++..++.+++.........+|.|+..-
T Consensus       293 ~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvDP  370 (432)
T COG2265         293 GGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVDP  370 (432)
T ss_pred             CCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEECC
Confidence            3679999999999999999944  57999999999999999999999999999999999999876431124789999964


Q ss_pred             cc-cH-HHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEEEe
Q 026122          155 VA-EM-RILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVE  208 (243)
Q Consensus       155 ~~-~~-~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~  208 (243)
                      .. .. +.+++.+.+ ++|..+++++.++.   .+..=...|...|+.+.++..++
T Consensus       371 PR~G~~~~~lk~l~~-~~p~~IvYVSCNP~---TlaRDl~~L~~~gy~i~~v~~~D  422 (432)
T COG2265         371 PRAGADREVLKQLAK-LKPKRIVYVSCNPA---TLARDLAILASTGYEIERVQPFD  422 (432)
T ss_pred             CCCCCCHHHHHHHHh-cCCCcEEEEeCCHH---HHHHHHHHHHhCCeEEEEEEEec
Confidence            21 12 355554443 46766777765543   33333455678898888877766

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.02  E-value=2.8e-09  Score=89.72  Aligned_cols=93  Identities=22%  Similarity=0.240  Sum_probs=74.7

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      ++..+|+|||+|+|..+..+++.+|+.+++..|. ++.++.+++      .++++++.+|+.+  ..   +. +|+++.+
T Consensus        99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~------~~rv~~~~gd~f~--~~---P~-~D~~~l~  165 (241)
T PF00891_consen   99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE------ADRVEFVPGDFFD--PL---PV-ADVYLLR  165 (241)
T ss_dssp             TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH------TTTEEEEES-TTT--CC---SS-ESEEEEE
T ss_pred             cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc------ccccccccccHHh--hh---cc-ccceeee
Confidence            3367899999999999999999999999999999 777777766      4579999999983  22   25 9999986


Q ss_pred             Cc------ccHHHHHHHHccCcccC--eEEEEEe
Q 026122          154 AV------AEMRILAEYCLPLVRVG--GLFVAAK  179 (243)
Q Consensus       154 ~~------~~~~~~l~~~~~~Lkpg--G~l~~~~  179 (243)
                      .+      .+...+++.+++.|+||  |+|++..
T Consensus       166 ~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e  199 (241)
T PF00891_consen  166 HVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIE  199 (241)
T ss_dssp             SSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEE
T ss_pred             hhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence            52      24688999999999999  9999876

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=99.02  E-value=8.8e-09  Score=91.54  Aligned_cols=130  Identities=19%  Similarity=0.150  Sum_probs=97.7

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEE
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIACPD--WKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVA  150 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I  150 (243)
                      .+++.+|||+++++|.=+..+|+...+  ..|+++|.++..+...+++++++|+.|+.+++.|...+.......++||.|
T Consensus       154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~i  233 (355)
T COG0144         154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRI  233 (355)
T ss_pred             CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEE
Confidence            456899999999999998888877643  567999999999999999999999999889998877654322111359999


Q ss_pred             EEcCc--------------------------ccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHH-HHHHHh-CCeee
Q 026122          151 VARAV--------------------------AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSE-RAVQLM-GASLL  202 (243)
Q Consensus       151 ~~~~~--------------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~-~~l~~~-g~~~~  202 (243)
                      +..+.                          .-..++++.+.+.|||||.|+...+.-..+|-++.. ..+++. ++..+
T Consensus       234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~vV~~~L~~~~~~~~~  313 (355)
T COG0144         234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEVVERFLERHPDFELE  313 (355)
T ss_pred             EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHHHHHHHHHhCCCceee
Confidence            98520                          015789999999999999999888765545444333 344454 44443

>TIGR00478 tly hemolysin TlyA family protein

Probab=99.01  E-value=3.3e-09  Score=88.45  Aligned_cols=120  Identities=11%  Similarity=-0.024  Sum_probs=73.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHH-HHHHHH--HcCCCCEEEEEccccccccCCcCCCCceEEEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVF-LEHAVS--LTQLLNVQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~-a~~~~~--~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      +.+|||+|||||.++..+++. +..+|+|||+++.++.. .+++.+  ..+..|++  ..+.+++...  . ..+|++++
T Consensus        76 ~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~--~~~~~~~~~d--~-~~~Dvsfi  149 (228)
T TIGR00478        76 NKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIR--YVTPADIFPD--F-ATFDVSFI  149 (228)
T ss_pred             CCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcc--cCCHhHcCCC--c-eeeeEEEe
Confidence            779999999999999988875 56799999999987764 333222  12223333  2233333211  1 36787776


Q ss_pred             cCcccHHHHHHHHccCcccCeEEEEEeCCC-------------------cHHHHHHHHHHHHHhCCeeeEEEE
Q 026122          153 RAVAEMRILAEYCLPLVRVGGLFVAAKGHD-------------------PQEEVKNSERAVQLMGASLLQLCS  206 (243)
Q Consensus       153 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-------------------~~~~~~~~~~~l~~~g~~~~~~~~  206 (243)
                      .    +..++..+.+.|++ |.+++..-++                   ....+.++...+...||.+.....
T Consensus       150 S----~~~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (228)
T TIGR00478       150 S----LISILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEKKIIF  217 (228)
T ss_pred             e----hHhHHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEeeEEE
Confidence            3    33356777788888 7766443211                   112234455556677887766543

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=99.00  E-value=6.8e-09  Score=92.22  Aligned_cols=137  Identities=18%  Similarity=0.182  Sum_probs=83.2

Q ss_pred             CeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC-------------cC
Q 026122           77 LKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------------SF  143 (243)
Q Consensus        77 ~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-------------~~  143 (243)
                      .+|||+-||+|.+++.+|..  ..+|+|||+++.+++.|++|++.++++|+++++++.+++....             ..
T Consensus       198 ~~vlDlycG~G~fsl~la~~--~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~  275 (352)
T PF05958_consen  198 GDVLDLYCGVGTFSLPLAKK--AKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKAREFNRLKGIDLK  275 (352)
T ss_dssp             TEEEEES-TTTCCHHHHHCC--SSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS-GGTTGGGS-GG
T ss_pred             CcEEEEeecCCHHHHHHHhh--CCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhhHHHHhhhhhhhh
Confidence            38999999999999999865  4699999999999999999999999999999998876642210             00


Q ss_pred             CCCceEEEEcC---cccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEEEe-cCCCCCceEEE
Q 026122          144 REQYDVAVARA---VAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVE-SQSPFGQRTAV  219 (243)
Q Consensus       144 ~~~fD~I~~~~---~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~-~~~~~~~r~~v  219 (243)
                      ...+|+|+...   ..+ +.+++.+.+   +. +++.++ .++..-.+++.. |.+ |+++.++..++ +|....--.++
T Consensus       276 ~~~~d~vilDPPR~G~~-~~~~~~~~~---~~-~ivYvS-CnP~tlaRDl~~-L~~-~y~~~~v~~~DmFP~T~HvE~v~  347 (352)
T PF05958_consen  276 SFKFDAVILDPPRAGLD-EKVIELIKK---LK-RIVYVS-CNPATLARDLKI-LKE-GYKLEKVQPVDMFPQTHHVETVA  347 (352)
T ss_dssp             CTTESEEEE---TT-SC-HHHHHHHHH---SS-EEEEEE-S-HHHHHHHHHH-HHC-CEEEEEEEEE-SSTTSS--EEEE
T ss_pred             hcCCCEEEEcCCCCCch-HHHHHHHhc---CC-eEEEEE-CCHHHHHHHHHH-Hhh-cCEEEEEEEeecCCCCCcEEEEE
Confidence            12589999853   111 334444432   23 433333 233334455443 443 99999998888 44444334455


Q ss_pred             EEEe
Q 026122          220 VCLK  223 (243)
Q Consensus       220 ~~~k  223 (243)
                      +++|
T Consensus       348 lL~r  351 (352)
T PF05958_consen  348 LLER  351 (352)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            5554

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=99.00  E-value=2.2e-09  Score=95.80  Aligned_cols=100  Identities=11%  Similarity=0.136  Sum_probs=87.0

Q ss_pred             CeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCc
Q 026122           77 LKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  155 (243)
Q Consensus        77 ~~VLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~  155 (243)
                      .+|||+.||+|..++.++...+ ..+|+++|+|+++++.+++|++.+++.+++++++|+..+....  ..+||+|.....
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~--~~~fDvIdlDPf  123 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYR--NRKFHVIDIDPF  123 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHh--CCCCCEEEeCCC
Confidence            5899999999999999997643 3689999999999999999999999888999999998764321  257999999877


Q ss_pred             ccHHHHHHHHccCcccCeEEEEE
Q 026122          156 AEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       156 ~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                      .....+++.+.+.+++||.+++.
T Consensus       124 Gs~~~fld~al~~~~~~glL~vT  146 (374)
T TIGR00308       124 GTPAPFVDSAIQASAERGLLLVT  146 (374)
T ss_pred             CCcHHHHHHHHHhcccCCEEEEE
Confidence            66678999999999999999987

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.99  E-value=2.9e-09  Score=92.22  Aligned_cols=73  Identities=19%  Similarity=0.204  Sum_probs=62.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC-CCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ-LLNVQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      ++.+|||||||+|.++..++..  +.+|+++|+|+.+++.++++....+ ..+++++++|+.+...     ..||.|++|
T Consensus        36 ~~~~VLEIG~G~G~LT~~Ll~~--~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~-----~~~d~VvaN  108 (294)
T PTZ00338         36 PTDTVLEIGPGTGNLTEKLLQL--AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF-----PYFDVCVAN  108 (294)
T ss_pred             CcCEEEEecCchHHHHHHHHHh--CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc-----cccCEEEec
Confidence            3789999999999999888865  4689999999999999999988776 3579999999988643     468999997


Q ss_pred             C
Q 026122          154 A  154 (243)
Q Consensus       154 ~  154 (243)
                      .
T Consensus       109 l  109 (294)
T PTZ00338        109 V  109 (294)
T ss_pred             C
Confidence            4

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=98.99  E-value=6.3e-09  Score=84.49  Aligned_cols=126  Identities=18%  Similarity=0.153  Sum_probs=79.7

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      ++...|.|+|||-+.++..+.   ...+|...|+-..               |-.+..+|+...|..+   ++.|+++..
T Consensus        71 ~~~~viaD~GCGdA~la~~~~---~~~~V~SfDLva~---------------n~~Vtacdia~vPL~~---~svDv~Vfc  129 (219)
T PF05148_consen   71 PKSLVIADFGCGDAKLAKAVP---NKHKVHSFDLVAP---------------NPRVTACDIANVPLED---ESVDVAVFC  129 (219)
T ss_dssp             -TTS-EEEES-TT-HHHHH-----S---EEEEESS-S---------------STTEEES-TTS-S--T---T-EEEEEEE
T ss_pred             CCCEEEEECCCchHHHHHhcc---cCceEEEeeccCC---------------CCCEEEecCccCcCCC---CceeEEEEE
Confidence            336799999999998763322   2458999998652               2247779999988764   789988863


Q ss_pred             -C--cccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEEEecCCCCCceEEEEEEeeC
Q 026122          154 -A--VAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSR  225 (243)
Q Consensus       154 -~--~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~v~~~k~~  225 (243)
                       +  ..++..+++++.|+|||||.|.+.+-...-..+..+.+.++..||......     ..+..-.++-.+|..
T Consensus       130 LSLMGTn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~d-----~~n~~F~~f~F~K~~  199 (219)
T PF05148_consen  130 LSLMGTNWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSKD-----ESNKHFVLFEFKKIR  199 (219)
T ss_dssp             S---SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEEE-------STTEEEEEEEE-S
T ss_pred             hhhhCCCcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEecc-----cCCCeEEEEEEEEcC
Confidence             2  458999999999999999999998855555577888999999999887642     123345555555654

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=98.98  E-value=1.9e-09  Score=88.20  Aligned_cols=126  Identities=13%  Similarity=0.107  Sum_probs=86.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~-  154 (243)
                      ..+.||.|||-|+++-.+.... --+|..||.+++.++.|++........-.++++..++++.+..   .+||+|++.- 
T Consensus        56 ~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~---~~YDlIW~QW~  131 (218)
T PF05891_consen   56 FNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEE---GKYDLIWIQWC  131 (218)
T ss_dssp             -SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----T---T-EEEEEEES-
T ss_pred             cceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCC---CcEeEEEehHh
Confidence            5689999999999986554332 3589999999999998887544322222789999999987653   6899999953 


Q ss_pred             -----cccHHHHHHHHccCcccCeEEEEEeCCCc-------------HHHHHHHHHHHHHhCCeeeEEE
Q 026122          155 -----VAEMRILAEYCLPLVRVGGLFVAAKGHDP-------------QEEVKNSERAVQLMGASLLQLC  205 (243)
Q Consensus       155 -----~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-------------~~~~~~~~~~l~~~g~~~~~~~  205 (243)
                           ..++..+++.|+..|+|+|.+++-++...             ......+++.++++|+.++..+
T Consensus       132 lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~  200 (218)
T PF05891_consen  132 LGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEE  200 (218)
T ss_dssp             GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEE
T ss_pred             hccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEec
Confidence                 34789999999999999999887542110             1124567888889999988754

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=98.96  E-value=5.2e-09  Score=82.77  Aligned_cols=74  Identities=14%  Similarity=0.084  Sum_probs=61.4

Q ss_pred             EEEeCCHHHHHHHHHHHHHcC---CCCEEEEEccccccccCCcCCCCceEEEEcC----cccHHHHHHHHccCcccCeEE
Q 026122          103 TLLESMNKRCVFLEHAVSLTQ---LLNVQIVRGRAETLGKDVSFREQYDVAVARA----VAEMRILAEYCLPLVRVGGLF  175 (243)
Q Consensus       103 ~~vD~s~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~----~~~~~~~l~~~~~~LkpgG~l  175 (243)
                      +|+|+|++|++.|++..+..+   ..+++++++|+++++..+   ++||+|++..    +.+...+++++.++|||||.+
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~---~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l   77 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDD---CEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRV   77 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCC---CCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEE
Confidence            589999999999987765322   346999999999987643   6899999863    557899999999999999999


Q ss_pred             EEEe
Q 026122          176 VAAK  179 (243)
Q Consensus       176 ~~~~  179 (243)
                      ++..
T Consensus        78 ~i~d   81 (160)
T PLN02232         78 SILD   81 (160)
T ss_pred             EEEE
Confidence            8765

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.94  E-value=2.7e-09  Score=91.57  Aligned_cols=72  Identities=22%  Similarity=0.153  Sum_probs=58.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      ++.+|||||||+|.++..++...  .+|+|+|+|+++++.++++...   .+++++++|+.+++...   -.+|.|++|-
T Consensus        42 ~~~~VLEiG~G~G~lt~~L~~~~--~~v~avE~d~~~~~~~~~~~~~---~~v~~i~~D~~~~~~~~---~~~~~vv~Nl  113 (272)
T PRK00274         42 PGDNVLEIGPGLGALTEPLLERA--AKVTAVEIDRDLAPILAETFAE---DNLTIIEGDALKVDLSE---LQPLKVVANL  113 (272)
T ss_pred             CcCeEEEeCCCccHHHHHHHHhC--CcEEEEECCHHHHHHHHHhhcc---CceEEEEChhhcCCHHH---cCcceEEEeC
Confidence            37899999999999999999874  3999999999999999876642   57999999999875421   1158888874

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=98.94  E-value=1.8e-08  Score=84.35  Aligned_cols=122  Identities=17%  Similarity=0.130  Sum_probs=87.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  155 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~  155 (243)
                      ..++||||+|.|.++..++..+.  +|++.|.|+.|....    ++.|.   +++  +..++...   +.+||+|.|-++
T Consensus        95 ~~~lLDlGAGdG~VT~~l~~~f~--~v~aTE~S~~Mr~rL----~~kg~---~vl--~~~~w~~~---~~~fDvIscLNv  160 (265)
T PF05219_consen   95 DKSLLDLGAGDGEVTERLAPLFK--EVYATEASPPMRWRL----SKKGF---TVL--DIDDWQQT---DFKFDVISCLNV  160 (265)
T ss_pred             CCceEEecCCCcHHHHHHHhhcc--eEEeecCCHHHHHHH----HhCCC---eEE--ehhhhhcc---CCceEEEeehhh
Confidence            56899999999999999987763  799999999875443    33343   333  22223222   258999999764


Q ss_pred             c----cHHHHHHHHccCcccCeEEEEE----------eCC--C-------------cHHHHHHHHHHHHHhCCeeeEEEE
Q 026122          156 A----EMRILAEYCLPLVRVGGLFVAA----------KGH--D-------------PQEEVKNSERAVQLMGASLLQLCS  206 (243)
Q Consensus       156 ~----~~~~~l~~~~~~LkpgG~l~~~----------~~~--~-------------~~~~~~~~~~~l~~~g~~~~~~~~  206 (243)
                      .    .+..+++.+++.|+|+|++++-          .+.  +             ..+++..+.+.++-+||+++...+
T Consensus       161 LDRc~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~~v~~p~GF~v~~~tr  240 (265)
T PF05219_consen  161 LDRCDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLVNVFEPAGFEVERWTR  240 (265)
T ss_pred             hhccCCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHHHHHHhcCCEEEEEec
Confidence            4    5789999999999999998842          122  1             133455566778899999998877


Q ss_pred             EecCC
Q 026122          207 VESQS  211 (243)
Q Consensus       207 ~~~~~  211 (243)
                      ..+-+
T Consensus       241 ~PYLc  245 (265)
T PF05219_consen  241 LPYLC  245 (265)
T ss_pred             cCccc
Confidence            66543

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.93  E-value=1.2e-08  Score=94.74  Aligned_cols=123  Identities=12%  Similarity=0.017  Sum_probs=94.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  155 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~  155 (243)
                      +..+||||||.|...+.+|..+|+..++|+|++...+..+.+.+...++.|+.+++.|+..+... -.++++|.|+.+-.
T Consensus       348 ~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~-~~~~sv~~i~i~FP  426 (506)
T PRK01544        348 RKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILND-LPNNSLDGIYILFP  426 (506)
T ss_pred             CceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHh-cCcccccEEEEECC
Confidence            56799999999999999999999999999999999999888888888999999998887644321 11267999998631


Q ss_pred             c------------cHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhC-Cee
Q 026122          156 A------------EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMG-ASL  201 (243)
Q Consensus       156 ~------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g-~~~  201 (243)
                      .            --..+++.+.+.|+|||.+.+.+..  .+-...+.+.+...+ |..
T Consensus       427 DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~--~~y~~~~~~~~~~~~~f~~  483 (506)
T PRK01544        427 DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDI--ENYFYEAIELIQQNGNFEI  483 (506)
T ss_pred             CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCC--HHHHHHHHHHHHhCCCeEe
Confidence            1            1378999999999999998886543  333334455555655 543

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.91  E-value=7.5e-09  Score=83.66  Aligned_cols=104  Identities=20%  Similarity=0.252  Sum_probs=80.3

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcC--------C--CCEEEEEccccccccC
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQ--------L--LNVQIVRGRAETLGKD  140 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~--------~--~~v~~~~~d~~~~~~~  140 (243)
                      +.++.+.||+|+|||.++..+++..  ++..++|||.-++.++.+++++++.-        +  .++.++.+|.......
T Consensus        80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e  159 (237)
T KOG1661|consen   80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE  159 (237)
T ss_pred             hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc
Confidence            3459999999999999998888654  33445999999999999999987643        2  2478999999887654


Q ss_pred             CcCCCCceEEEEcCcccHHHHHHHHccCcccCeEEEEEeCC
Q 026122          141 VSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGH  181 (243)
Q Consensus       141 ~~~~~~fD~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  181 (243)
                      .   .+||.|.+.+..  .++.+.+...|++||++++..+.
T Consensus       160 ~---a~YDaIhvGAaa--~~~pq~l~dqL~~gGrllip~~~  195 (237)
T KOG1661|consen  160 Q---APYDAIHVGAAA--SELPQELLDQLKPGGRLLIPVGQ  195 (237)
T ss_pred             c---CCcceEEEccCc--cccHHHHHHhhccCCeEEEeecc
Confidence            3   789999998533  33345555689999999987764

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=98.90  E-value=4e-08  Score=84.35  Aligned_cols=142  Identities=17%  Similarity=0.168  Sum_probs=106.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC----CCCEEEEEccccccccCCcCCCCceEEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ----LLNVQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      .++||-||-|.|..+..+.+..+-.+++.||+++..++.+++......    .++++++.+|..++....  ..+||+|+
T Consensus        77 pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~--~~~fDvIi  154 (282)
T COG0421          77 PKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDC--EEKFDVII  154 (282)
T ss_pred             CCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhC--CCcCCEEE
Confidence            469999999999999888877667899999999999999999876544    356999999998876532  25799999


Q ss_pred             EcCccc--------HHHHHHHHccCcccCeEEEEEeCC--CcHHHHHHHHHHHHHhCCeeeEEEEEecCCCCCceEEEE
Q 026122          152 ARAVAE--------MRILAEYCLPLVRVGGLFVAAKGH--DPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVV  220 (243)
Q Consensus       152 ~~~~~~--------~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~v~  220 (243)
                      +.....        -.++++.+++.|+++|.++.-.+.  ...+++....+.++.. |..........+...+....+.
T Consensus       155 ~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~~~~~~~~~~~~~~v-f~~~~~~~~~ipt~~~g~~~f~  232 (282)
T COG0421         155 VDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQDEEIALAYRNVSRV-FSIVPPYVAPIPTYPSGFWGFI  232 (282)
T ss_pred             EcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhh-ccccccceeccceecCCceEEE
Confidence            975322        388999999999999998887532  2235566666666666 6666655555555555533333

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=98.89  E-value=7.9e-08  Score=81.28  Aligned_cols=146  Identities=15%  Similarity=0.111  Sum_probs=101.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC----CCCEEEEEccccccccCCcCCC-CceEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ----LLNVQIVRGRAETLGKDVSFRE-QYDVA  150 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~~~~~~~~~-~fD~I  150 (243)
                      ..+||=||-|.|..+..+.+..+-.+|+.||+++..++.+++......    -++++++.+|...+....  .+ +||+|
T Consensus        77 p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~--~~~~yDvI  154 (246)
T PF01564_consen   77 PKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKET--QEEKYDVI  154 (246)
T ss_dssp             T-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTS--SST-EEEE
T ss_pred             cCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhc--cCCcccEE
Confidence            789999999999988777755445799999999999999999866532    246999999998865432  24 89999


Q ss_pred             EEcCcc--------cHHHHHHHHccCcccCeEEEEEe--CCCcHHHHHHHHHHHHHhCCeeeEEEEEecCCCCCceEEEE
Q 026122          151 VARAVA--------EMRILAEYCLPLVRVGGLFVAAK--GHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVV  220 (243)
Q Consensus       151 ~~~~~~--------~~~~~l~~~~~~LkpgG~l~~~~--~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~v~  220 (243)
                      +.....        --.++++.+++.|+|||.+++-.  .......+..+.+.++.... .+.......|.....-..+.
T Consensus       155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~-~v~~~~~~vP~~~~~~~~~~  233 (246)
T PF01564_consen  155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVFP-QVKPYTAYVPSYGSGWWSFA  233 (246)
T ss_dssp             EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTSS-EEEEEEEECTTSCSSEEEEE
T ss_pred             EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhCC-ceEEEEEEcCeecccceeEE
Confidence            995422        13789999999999999988765  23345566666777766655 44444455565555544444


Q ss_pred             EEee
Q 026122          221 CLKS  224 (243)
Q Consensus       221 ~~k~  224 (243)
                      ..++
T Consensus       234 ~~s~  237 (246)
T PF01564_consen  234 SASK  237 (246)
T ss_dssp             EEES
T ss_pred             EEeC
Confidence            4443

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.89  E-value=1.5e-08  Score=87.55  Aligned_cols=76  Identities=11%  Similarity=0.023  Sum_probs=62.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcC-CCCceEEEE
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSF-REQYDVAVA  152 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~-~~~fD~I~~  152 (243)
                      ++..++|.+||.|..+..++...+ .++|+|+|.++++++.+++....  ..++++++++..++...... ..++|.|++
T Consensus        19 pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l~~~l~~~~~~vDgIl~   96 (296)
T PRK00050         19 PDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNLKEVLAEGLGKVDGILL   96 (296)
T ss_pred             CCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHHHHHHHcCCCccCEEEE
Confidence            378999999999999999998875 68999999999999999987755  45799999999886432110 027999998

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.89  E-value=5.9e-09  Score=82.22  Aligned_cols=74  Identities=18%  Similarity=0.190  Sum_probs=56.0

Q ss_pred             eEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEEEc
Q 026122           78 KLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        78 ~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      .|+|+.||.|..++.+|+.+  .+|++||+++..++.++.|++-.|+. +|+++++|+.+..........+|+|++.
T Consensus         2 ~vlD~fcG~GGNtIqFA~~~--~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS   76 (163)
T PF09445_consen    2 TVLDAFCGVGGNTIQFARTF--DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS   76 (163)
T ss_dssp             EEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred             EEEEeccCcCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence            69999999999999999874  58999999999999999999999975 6999999999875432111128999984

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=98.85  E-value=1.3e-07  Score=77.66  Aligned_cols=138  Identities=13%  Similarity=0.044  Sum_probs=92.8

Q ss_pred             EEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccccccCCcCCCCceEEEEcCcc-
Q 026122           79 LVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAVARAVA-  156 (243)
Q Consensus        79 VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~-  156 (243)
                      |.||||--|.+++.|.+.....+++++|+++.-++.|++++++.++.+ ++++.+|..+.-...   +..|.|+..++. 
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~---e~~d~ivIAGMGG   77 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPG---EDVDTIVIAGMGG   77 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GG---G---EEEEEEE-H
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCC---CCCCEEEEecCCH
Confidence            689999999999999988666689999999999999999999999865 999999976543221   337888875543 


Q ss_pred             -cHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEEEecCCCCCceEEEEEEeeC
Q 026122          157 -EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSR  225 (243)
Q Consensus       157 -~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~v~~~k~~  225 (243)
                       .+.++++.....++..-.|++ .+...   ...++++|...||.+.+..-+.  ....-..++.+.+..
T Consensus        78 ~lI~~ILe~~~~~~~~~~~lIL-qP~~~---~~~LR~~L~~~gf~I~~E~lv~--e~~~~YeIi~~~~~~  141 (205)
T PF04816_consen   78 ELIIEILEAGPEKLSSAKRLIL-QPNTH---AYELRRWLYENGFEIIDEDLVE--ENGRFYEIIVAERGE  141 (205)
T ss_dssp             HHHHHHHHHTGGGGTT--EEEE-EESS----HHHHHHHHHHTTEEEEEEEEEE--ETTEEEEEEEEEESS
T ss_pred             HHHHHHHHhhHHHhccCCeEEE-eCCCC---hHHHHHHHHHCCCEEEEeEEEe--ECCEEEEEEEEEeCC
Confidence             568888888777766556555 33333   3455677779999998876544  222234444444443

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=98.85  E-value=3.1e-08  Score=82.49  Aligned_cols=122  Identities=19%  Similarity=0.177  Sum_probs=91.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc-C
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR-A  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~-~  154 (243)
                      ...|-|+|||-+.++.    .. ..+|+..|+-.               .|-+++.+|+.+.+..+   ++.|+++.. +
T Consensus       181 ~~vIaD~GCGEakiA~----~~-~~kV~SfDL~a---------------~~~~V~~cDm~~vPl~d---~svDvaV~CLS  237 (325)
T KOG3045|consen  181 NIVIADFGCGEAKIAS----SE-RHKVHSFDLVA---------------VNERVIACDMRNVPLED---ESVDVAVFCLS  237 (325)
T ss_pred             ceEEEecccchhhhhh----cc-ccceeeeeeec---------------CCCceeeccccCCcCcc---CcccEEEeeHh
Confidence            5689999999997743    22 35899999864               14578889999988765   899988853 2


Q ss_pred             --cccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEEEecCCCCCceEEEEEEeeC
Q 026122          155 --VAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSR  225 (243)
Q Consensus       155 --~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~v~~~k~~  225 (243)
                        ..++..+++++.|+|++||.+++-.-...-+.+..+.+.+..+||......     .......++..+|..
T Consensus       238 LMgtn~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~d-----~~n~~F~lfefkK~~  305 (325)
T KOG3045|consen  238 LMGTNLADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHKD-----VSNKYFTLFEFKKTP  305 (325)
T ss_pred             hhcccHHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeehh-----hhcceEEEEEEecCC
Confidence              458999999999999999999997755555667788999999999776542     223445555556553

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.84  E-value=5.3e-08  Score=82.69  Aligned_cols=70  Identities=20%  Similarity=0.246  Sum_probs=57.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCce---EEEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYD---VAVA  152 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD---~I~~  152 (243)
                      +.+|||||||+|.++..++...  .+|+++|+++.+++.++++...  ..+++++++|+.+.+.     .++|   .|++
T Consensus        30 ~~~VLEiG~G~G~lt~~L~~~~--~~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~~~-----~~~d~~~~vvs  100 (253)
T TIGR00755        30 GDVVLEIGPGLGALTEPLLKRA--KKVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKVDL-----PDFPKQLKVVS  100 (253)
T ss_pred             cCEEEEeCCCCCHHHHHHHHhC--CcEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcCCh-----hHcCCcceEEE
Confidence            7899999999999999998775  4699999999999998877643  3579999999988764     2456   8888


Q ss_pred             cC
Q 026122          153 RA  154 (243)
Q Consensus       153 ~~  154 (243)
                      |-
T Consensus       101 Nl  102 (253)
T TIGR00755       101 NL  102 (253)
T ss_pred             cC
Confidence            74

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.83  E-value=4.9e-08  Score=80.12  Aligned_cols=104  Identities=23%  Similarity=0.270  Sum_probs=86.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccC---CcCCCCceEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKD---VSFREQYDVA  150 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~---~~~~~~fD~I  150 (243)
                      ++++||||.=||.-++..|...| +++|+++|+++...+.+.+..+..|.. .|++++++..+....   ....+.||++
T Consensus        74 ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDfa  153 (237)
T KOG1663|consen   74 AKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDFA  153 (237)
T ss_pred             CceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeEE
Confidence            78999999999999999998876 589999999999999999999999986 499999987663211   1113689999


Q ss_pred             EEcCcc-cHHHHHHHHccCcccCeEEEEEe
Q 026122          151 VARAVA-EMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       151 ~~~~~~-~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      |..+.. ++....+++.++||+||.+++-.
T Consensus       154 FvDadK~nY~~y~e~~l~Llr~GGvi~~DN  183 (237)
T KOG1663|consen  154 FVDADKDNYSNYYERLLRLLRVGGVIVVDN  183 (237)
T ss_pred             EEccchHHHHHHHHHHHhhcccccEEEEec
Confidence            998754 56788999999999999988643

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=98.80  E-value=2.6e-07  Score=77.62  Aligned_cols=133  Identities=15%  Similarity=0.112  Sum_probs=101.5

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEE
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVA  150 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I  150 (243)
                      +++|.+|++-|+|+|.++.++++.- |.++++..|..+...+.|++..+..++. |+++.+-|+....+.. ....+|.|
T Consensus       103 i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~-ks~~aDaV  181 (314)
T KOG2915|consen  103 IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI-KSLKADAV  181 (314)
T ss_pred             CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc-cccccceE
Confidence            5679999999999999999998875 6789999999999999999999999985 6999999988755432 13679999


Q ss_pred             EEcCcccHHHHHHHHccCcccCe-EEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEEEec
Q 026122          151 VARAVAEMRILAEYCLPLVRVGG-LFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVES  209 (243)
Q Consensus       151 ~~~~~~~~~~~l~~~~~~LkpgG-~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~  209 (243)
                      +..-..+++.+-. +.+.||.+| +++..+..  .+.+...-+.+..+||.-+++.++..
T Consensus       182 FLDlPaPw~AiPh-a~~~lk~~g~r~csFSPC--IEQvqrtce~l~~~gf~~i~~vEv~~  238 (314)
T KOG2915|consen  182 FLDLPAPWEAIPH-AAKILKDEGGRLCSFSPC--IEQVQRTCEALRSLGFIEIETVEVLL  238 (314)
T ss_pred             EEcCCChhhhhhh-hHHHhhhcCceEEeccHH--HHHHHHHHHHHHhCCCceEEEEEeeh
Confidence            9977666655544 444888766 65554432  44555666778899997766655543

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.75  E-value=2e-08  Score=82.46  Aligned_cols=129  Identities=16%  Similarity=0.173  Sum_probs=94.2

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC--CEEEEEccccccccCCcCCCCceEEE
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL--NVQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      +.+.+|||.|+|-|..++..+.+ ++.+|+.||.++..++.|.-|-=+.++.  .++++.+|+.++.... .+++||+|+
T Consensus       133 ~~G~rVLDtC~GLGYtAi~a~~r-GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~-~D~sfDaIi  210 (287)
T COG2521         133 KRGERVLDTCTGLGYTAIEALER-GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDF-DDESFDAII  210 (287)
T ss_pred             ccCCEeeeeccCccHHHHHHHHc-CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcC-CccccceEe
Confidence            35899999999999998766644 4459999999999988887664333332  4899999998875432 136799999


Q ss_pred             EcC----cc---cHHHHHHHHccCcccCeEEEEEeCCCc-----HHHHHHHHHHHHHhCCeeeEE
Q 026122          152 ARA----VA---EMRILAEYCLPLVRVGGLFVAAKGHDP-----QEEVKNSERAVQLMGASLLQL  204 (243)
Q Consensus       152 ~~~----~~---~~~~~l~~~~~~LkpgG~l~~~~~~~~-----~~~~~~~~~~l~~~g~~~~~~  204 (243)
                      -..    .+   --+++.+++.|+|||||.++-..|...     ..-.....+.|++.||..++.
T Consensus       211 HDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~  275 (287)
T COG2521         211 HDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKK  275 (287)
T ss_pred             eCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeee
Confidence            853    11   247889999999999999887765321     122345667788999975543

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=98.75  E-value=2e-07  Score=79.23  Aligned_cols=104  Identities=13%  Similarity=0.119  Sum_probs=84.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCCE-EEEEccccccccCCcCCCCceEEEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPD--WKVTLLESMNKRCVFLEHAVSLTQLLNV-QIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      .-+||||.||.|..-+......|.  .+|...|.|+..++..++.++..|+.++ +|.++|+.+...........+++++
T Consensus       136 pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~iV  215 (311)
T PF12147_consen  136 PVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAIV  215 (311)
T ss_pred             ceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEEE
Confidence            569999999999987777777775  7999999999999999999999999885 9999999885433223356799988


Q ss_pred             cCc----cc---HHHHHHHHccCcccCeEEEEEe
Q 026122          153 RAV----AE---MRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       153 ~~~----~~---~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      .++    ++   ....++.+.+.+.|||+++...
T Consensus       216 sGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTg  249 (311)
T PF12147_consen  216 SGLYELFPDNDLVRRSLAGLARALEPGGYLIYTG  249 (311)
T ss_pred             ecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence            752    22   5667888999999999977654

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PRK04148 hypothetical protein; Provisional

Probab=98.74  E-value=6.1e-08  Score=73.91  Aligned_cols=83  Identities=10%  Similarity=0.069  Sum_probs=60.5

Q ss_pred             CCeEEEEcCCCCh-HHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc-
Q 026122           76 NLKLVDVGTGAGL-PGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR-  153 (243)
Q Consensus        76 ~~~VLDiGcG~G~-~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~-  153 (243)
                      +.+|+|||||+|. ++..|++.  +.+|+++|+++++++.++++       .++++.+|+.+....  .-+.+|+|.+- 
T Consensus        17 ~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~-------~~~~v~dDlf~p~~~--~y~~a~liysir   85 (134)
T PRK04148         17 NKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKKL-------GLNAFVDDLFNPNLE--IYKNAKLIYSIR   85 (134)
T ss_pred             CCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHh-------CCeEEECcCCCCCHH--HHhcCCEEEEeC
Confidence            5789999999996 77777754  68999999999977766554       268999999886543  23679999984 


Q ss_pred             CcccHHHHHHHHccCc
Q 026122          154 AVAEMRILAEYCLPLV  169 (243)
Q Consensus       154 ~~~~~~~~l~~~~~~L  169 (243)
                      ...++...+-.+.+.+
T Consensus        86 pp~el~~~~~~la~~~  101 (134)
T PRK04148         86 PPRDLQPFILELAKKI  101 (134)
T ss_pred             CCHHHHHHHHHHHHHc
Confidence            3445544444444444

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=98.74  E-value=6.2e-08  Score=85.19  Aligned_cols=105  Identities=11%  Similarity=0.097  Sum_probs=70.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC-------C---CCEEEEEccccccccC---C
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ-------L---LNVQIVRGRAETLGKD---V  141 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-------~---~~v~~~~~d~~~~~~~---~  141 (243)
                      ++.+|||+|||-|.-..-.... .-.+++|+|++...++.|++..+...       .   -...++.+|.......   .
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~-~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~  140 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKA-KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP  140 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHT-T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred             CCCeEEEecCCCchhHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence            3789999999988754334433 34699999999999999988873211       1   1267788887643211   0


Q ss_pred             cCCCCceEEEEcC--------cccHHHHHHHHccCcccCeEEEEEeC
Q 026122          142 SFREQYDVAVARA--------VAEMRILAEYCLPLVRVGGLFVAAKG  180 (243)
Q Consensus       142 ~~~~~fD~I~~~~--------~~~~~~~l~~~~~~LkpgG~l~~~~~  180 (243)
                      ....+||+|-|.-        -.....+++.+...|+|||.++....
T Consensus       141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~  187 (331)
T PF03291_consen  141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP  187 (331)
T ss_dssp             STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence            1014899999952        22467899999999999999887654

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=98.74  E-value=7.4e-08  Score=83.11  Aligned_cols=112  Identities=18%  Similarity=0.180  Sum_probs=88.8

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEE
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      .++.+|||+++|+|.-+..+|.... .+.|++.|++++.+...+.+++++|..++.+.+.|........ ....||.|+.
T Consensus        84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~-~~~~fd~Vlv  162 (283)
T PF01189_consen   84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKK-PESKFDRVLV  162 (283)
T ss_dssp             TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHH-HTTTEEEEEE
T ss_pred             cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccc-cccccchhhc
Confidence            3488999999999999888888765 6899999999999999999999999999999988887763211 1145999998


Q ss_pred             cCc--------------------------ccHHHHHHHHccCc----ccCeEEEEEeCCCcHHH
Q 026122          153 RAV--------------------------AEMRILAEYCLPLV----RVGGLFVAAKGHDPQEE  186 (243)
Q Consensus       153 ~~~--------------------------~~~~~~l~~~~~~L----kpgG~l~~~~~~~~~~~  186 (243)
                      .+.                          .-..++++.+.+.+    ||||+++.....-..+|
T Consensus       163 DaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eE  226 (283)
T PF01189_consen  163 DAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEE  226 (283)
T ss_dssp             ECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGG
T ss_pred             CCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHH
Confidence            420                          01477899999999    99999998886543333

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>PRK00536 speE spermidine synthase; Provisional

Probab=98.71  E-value=7.6e-07  Score=75.67  Aligned_cols=138  Identities=9%  Similarity=-0.024  Sum_probs=94.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH----cCCCCEEEEEccccccccCCcCCCCceEE
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSL----TQLLNVQIVRGRAETLGKDVSFREQYDVA  150 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~----~~~~~v~~~~~d~~~~~~~~~~~~~fD~I  150 (243)
                      ..++||=||.|-|..+..+.+. +. +|+.||++++.++.+++....    ..-++++++.. ..+.     ..++||+|
T Consensus        72 ~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~-----~~~~fDVI  143 (262)
T PRK00536         72 ELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDL-----DIKKYDLI  143 (262)
T ss_pred             CCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhc-----cCCcCCEE
Confidence            3789999999999988777754 54 999999999999999995433    22345777752 2111     12689999


Q ss_pred             EEcCcccHHHHHHHHccCcccCeEEEEEeCC--CcHHHHHHHHHHHHHhCCeeeEEEEEecCCCCCceEEEEEEe
Q 026122          151 VARAVAEMRILAEYCLPLVRVGGLFVAAKGH--DPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLK  223 (243)
Q Consensus       151 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~v~~~k  223 (243)
                      ++....+ .++.+.+++.|+|||.++.-.+.  -..+.+..+.+.+++ .|..........+. .+.=..+++.+
T Consensus       144 IvDs~~~-~~fy~~~~~~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~-~F~~v~~y~~~vp~-~g~wgf~~aS~  215 (262)
T PRK00536        144 ICLQEPD-IHKIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGD-FFSIAMPFVAPLRI-LSNKGYIYASF  215 (262)
T ss_pred             EEcCCCC-hHHHHHHHHhcCCCcEEEECCCCcccCHHHHHHHHHHHHh-hCCceEEEEecCCC-cchhhhheecC
Confidence            9975433 67889999999999998875532  235566677777777 67765544433332 23334444444

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.71  E-value=1.1e-08  Score=79.53  Aligned_cols=131  Identities=17%  Similarity=0.204  Sum_probs=98.2

Q ss_pred             CCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCCEEEEEccccccccCCcCCCCceEEE
Q 026122           76 NLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ---LLNVQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        76 ~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      +.+||++|.| +|..++.+|...|...|...|-+++.++..++....+.   +..+.++..++..-..+. ....||+|+
T Consensus        30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~-eq~tFDiIl  108 (201)
T KOG3201|consen   30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQ-EQHTFDIIL  108 (201)
T ss_pred             HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHH-hhCcccEEE
Confidence            7799999999 78788899988888999999999999998888776652   333444444443322211 124799999


Q ss_pred             EcC---c-ccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEEEe
Q 026122          152 ARA---V-AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVE  208 (243)
Q Consensus       152 ~~~---~-~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~  208 (243)
                      +..   + ...+.+++.++.+|+|.|.-++ ..+.....+..+.+...+.||.+...++++
T Consensus       109 aADClFfdE~h~sLvdtIk~lL~p~g~Al~-fsPRRg~sL~kF~de~~~~gf~v~l~enyd  168 (201)
T KOG3201|consen  109 AADCLFFDEHHESLVDTIKSLLRPSGRALL-FSPRRGQSLQKFLDEVGTVGFTVCLEENYD  168 (201)
T ss_pred             eccchhHHHHHHHHHHHHHHHhCcccceeE-ecCcccchHHHHHHHHHhceeEEEecccHh
Confidence            864   2 2468899999999999999554 455667788999999999999887666544

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=98.70  E-value=2e-08  Score=79.94  Aligned_cols=94  Identities=22%  Similarity=0.299  Sum_probs=77.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  155 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~  155 (243)
                      .+.+-|+|+|+|.++...|..  +-+|++||.++.....|.+|+.-.|..|++++++|+.+...     +..|+|+|...
T Consensus        33 ~d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f-----e~ADvvicEml  105 (252)
T COG4076          33 EDTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF-----ENADVVICEML  105 (252)
T ss_pred             hhceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc-----cccceeHHHHh
Confidence            468999999999999776654  57999999999999999999988888899999999999865     56899999542


Q ss_pred             c------cHHHHHHHHccCcccCeEEE
Q 026122          156 A------EMRILAEYCLPLVRVGGLFV  176 (243)
Q Consensus       156 ~------~~~~~l~~~~~~LkpgG~l~  176 (243)
                      .      ....++..+...||.++.++
T Consensus       106 DTaLi~E~qVpV~n~vleFLr~d~tii  132 (252)
T COG4076         106 DTALIEEKQVPVINAVLEFLRYDPTII  132 (252)
T ss_pred             hHHhhcccccHHHHHHHHHhhcCCccc
Confidence            1      34455666666888888866

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=98.68  E-value=3.9e-06  Score=69.02  Aligned_cols=147  Identities=18%  Similarity=0.115  Sum_probs=95.8

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEE
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      ++++.+||-+|+.+|.--..++..- +.+.|+|||.|+....-.-..+++.  +|+-.+.+|+.....-...-+..|+|+
T Consensus        71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R--~NIiPIl~DAr~P~~Y~~lv~~VDvI~  148 (229)
T PF01269_consen   71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR--PNIIPILEDARHPEKYRMLVEMVDVIF  148 (229)
T ss_dssp             --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS--TTEEEEES-TTSGGGGTTTS--EEEEE
T ss_pred             CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC--CceeeeeccCCChHHhhcccccccEEE
Confidence            4668999999999999766777654 4789999999997665554444432  478889999876433222235899999


Q ss_pred             EcC-cc-cHHHHHHHHccCcccCeEEEEEeC-------CCcHHHHHHHHHHHHHhCCeeeEEEEEecCCCCCceEEEEEE
Q 026122          152 ARA-VA-EMRILAEYCLPLVRVGGLFVAAKG-------HDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCL  222 (243)
Q Consensus       152 ~~~-~~-~~~~~l~~~~~~LkpgG~l~~~~~-------~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~v~~~  222 (243)
                      +.- .+ ..+-++..+...||+||.++++.-       ....+...+-.+.|++.||++.+..  ++..-..++.+|+.+
T Consensus       149 ~DVaQp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e~i--~LePy~~dH~~vv~~  226 (229)
T PF01269_consen  149 QDVAQPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLEQI--TLEPYERDHAMVVGR  226 (229)
T ss_dssp             EE-SSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEEEE--E-TTTSTTEEEEEEE
T ss_pred             ecCCChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChheEe--ccCCCCCCcEEEEEE
Confidence            963 33 456677788889999999887651       2334445555667778899887664  443434455555554


Q ss_pred             e
Q 026122          223 K  223 (243)
Q Consensus       223 k  223 (243)
                      .
T Consensus       227 y  227 (229)
T PF01269_consen  227 Y  227 (229)
T ss_dssp             E
T ss_pred             e
Confidence            3

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.64  E-value=8.5e-08  Score=78.78  Aligned_cols=104  Identities=13%  Similarity=0.102  Sum_probs=64.7

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH-------cCC--CCEEEEEccccccccCCcCC
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSL-------TQL--LNVQIVRGRAETLGKDVSFR  144 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~-------~~~--~~v~~~~~d~~~~~~~~~~~  144 (243)
                      .+++..+|||||.|...+..|...+..+++|||+.+...+.|+...+.       .|.  .++++.++|+.+.......-
T Consensus        41 ~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~~  120 (205)
T PF08123_consen   41 TPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDIW  120 (205)
T ss_dssp             -TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHHG
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhhh
Confidence            347899999999999988888777655699999999988887665432       343  34888899987643211001


Q ss_pred             CCceEEEEcCcc---cHHHHHHHHccCcccCeEEEE
Q 026122          145 EQYDVAVARAVA---EMRILAEYCLPLVRVGGLFVA  177 (243)
Q Consensus       145 ~~fD~I~~~~~~---~~~~~l~~~~~~LkpgG~l~~  177 (243)
                      ...|+|++|+..   ++..-+......||+|-+++-
T Consensus       121 s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~IIs  156 (205)
T PF08123_consen  121 SDADVVFVNNTCFDPDLNLALAELLLELKPGARIIS  156 (205)
T ss_dssp             HC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEEE
T ss_pred             cCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEEE
Confidence            357999998743   455555666678899988664

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=98.63  E-value=1.5e-07  Score=72.52  Aligned_cols=59  Identities=25%  Similarity=0.348  Sum_probs=53.2

Q ss_pred             eEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccc
Q 026122           78 KLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAET  136 (243)
Q Consensus        78 ~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~  136 (243)
                      +++|+|||.|..++.++...++++|+++|+++.+.+.++++++.+++.++++++..+.+
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~   59 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD   59 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence            48999999999999999888888999999999999999999999988778888777655

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.62  E-value=3.4e-07  Score=88.31  Aligned_cols=107  Identities=8%  Similarity=-0.030  Sum_probs=79.6

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHC------------------------------------------CCCEEEEEeCCHHH
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIAC------------------------------------------PDWKVTLLESMNKR  111 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~------------------------------------------~~~~v~~vD~s~~~  111 (243)
                      +++..++|-+||+|.+.+..|...                                          ...+++|+|+++++
T Consensus       189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a  268 (702)
T PRK11783        189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV  268 (702)
T ss_pred             CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence            447899999999999988877631                                          12379999999999


Q ss_pred             HHHHHHHHHHcCCCC-EEEEEccccccccCCcCCCCceEEEEcC-----c---ccHHHHHHHHccCcc---cCeEEEEEe
Q 026122          112 CVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAVARA-----V---AEMRILAEYCLPLVR---VGGLFVAAK  179 (243)
Q Consensus       112 ~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~fD~I~~~~-----~---~~~~~~l~~~~~~Lk---pgG~l~~~~  179 (243)
                      ++.|++|++.+|+.+ +++.++|+.++.... ..++||+|++|.     .   .+...+.+.+.+.++   +|+.+++..
T Consensus       269 v~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~-~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~llt  347 (702)
T PRK11783        269 IQAARKNARRAGVAELITFEVKDVADLKNPL-PKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAALFS  347 (702)
T ss_pred             HHHHHHHHHHcCCCcceEEEeCChhhccccc-ccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEEe
Confidence            999999999999965 999999999875431 124699999984     1   123344444333333   888888877


Q ss_pred             CC
Q 026122          180 GH  181 (243)
Q Consensus       180 ~~  181 (243)
                      +.
T Consensus       348 ~~  349 (702)
T PRK11783        348 SS  349 (702)
T ss_pred             CC
Confidence            63

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.54  E-value=4.4e-07  Score=74.10  Aligned_cols=102  Identities=13%  Similarity=0.130  Sum_probs=65.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHH--------CC-CCEEEEEeCCHHHHHHHHHHH--------------HH-c----C----
Q 026122           76 NLKLVDVGTGAGLPGLVLAIA--------CP-DWKVTLLESMNKRCVFLEHAV--------------SL-T----Q----  123 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~--------~~-~~~v~~vD~s~~~~~~a~~~~--------------~~-~----~----  123 (243)
                      .-+|+..||+||-=...+|..        .+ ..+|+|+|+|+.+++.|++-.              ++ .    +    
T Consensus        32 ~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~  111 (196)
T PF01739_consen   32 PLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYR  111 (196)
T ss_dssp             -EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTT
T ss_pred             CeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCcee
Confidence            568999999999854333321        11 369999999999999986531              11 1    1    


Q ss_pred             C-----CCEEEEEccccccccCCcCCCCceEEEEcCcc------cHHHHHHHHccCcccCeEEEEEeC
Q 026122          124 L-----LNVQIVRGRAETLGKDVSFREQYDVAVARAVA------EMRILAEYCLPLVRVGGLFVAAKG  180 (243)
Q Consensus       124 ~-----~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~------~~~~~l~~~~~~LkpgG~l~~~~~  180 (243)
                      +     ++|+|.+.|+.+....   .+.||+|+|+++.      ....+++.+.+.|+|||.|++-.+
T Consensus       112 v~~~lr~~V~F~~~NL~~~~~~---~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~s  176 (196)
T PF01739_consen  112 VKPELRKMVRFRRHNLLDPDPP---FGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHS  176 (196)
T ss_dssp             E-HHHHTTEEEEE--TT-S---------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred             EChHHcCceEEEecccCCCCcc---cCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence            1     2488999998882222   3789999998743      468999999999999999988443

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.53  E-value=1.1e-06  Score=74.48  Aligned_cols=146  Identities=17%  Similarity=0.153  Sum_probs=86.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc----------------C-----------CC-CE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT----------------Q-----------LL-NV  127 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~----------------~-----------~~-~v  127 (243)
                      +.++||||||+-..-+.-|..+ --+|+..|.++...+..++-+++-                |           +. .|
T Consensus        57 g~~llDiGsGPtiy~~lsa~~~-f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~V  135 (256)
T PF01234_consen   57 GETLLDIGSGPTIYQLLSACEW-FEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAV  135 (256)
T ss_dssp             EEEEEEES-TT--GGGTTGGGT-EEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHE
T ss_pred             CCEEEEeCCCcHHHhhhhHHHh-hcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhh
Confidence            6799999999976532223221 247999999998887655543321                1           00 12


Q ss_pred             -EEEEccccccccCCc---CCCCceEEEEcC--------cccHHHHHHHHccCcccCeEEEEEe---------CCC----
Q 026122          128 -QIVRGRAETLGKDVS---FREQYDVAVARA--------VAEMRILAEYCLPLVRVGGLFVAAK---------GHD----  182 (243)
Q Consensus       128 -~~~~~d~~~~~~~~~---~~~~fD~I~~~~--------~~~~~~~l~~~~~~LkpgG~l~~~~---------~~~----  182 (243)
                       +++.+|+.+.++...   .+.+||+|++.-        ...+...++.+.++|||||.|++..         |..    
T Consensus       136 k~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~~  215 (256)
T PF01234_consen  136 KQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFPC  215 (256)
T ss_dssp             EEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE-
T ss_pred             ceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEeccc
Confidence             477888877554322   234599999842        4468889999999999999998653         111    


Q ss_pred             cHHHHHHHHHHHHHhCCeeeEEEEEecCCCCCceEEEEEEe
Q 026122          183 PQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLK  223 (243)
Q Consensus       183 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~v~~~k  223 (243)
                      ..-.-..+.+.++++|+.+.+.+. .....+-+..++++.+
T Consensus       216 l~l~ee~v~~al~~aG~~i~~~~~-~~~~~d~~~~~f~~a~  255 (256)
T PF01234_consen  216 LPLNEEFVREALEEAGFDIEDLEK-QSKVSDYEGMFFLVAR  255 (256)
T ss_dssp             --B-HHHHHHHHHHTTEEEEEEEG--TTTB---EEEEEEEE
T ss_pred             ccCCHHHHHHHHHHcCCEEEeccc-ccCcCCCCcEEEEEEe
Confidence            011223466788899999988874 3333333445544443

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=98.53  E-value=1.6e-05  Score=66.18  Aligned_cols=128  Identities=13%  Similarity=0.184  Sum_probs=82.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~-  154 (243)
                      |++||=+|=.- ..++++|...+..+|+-+|+++..+++.++.+++.|++ ++.+..|+.+--+. ...++||++++.. 
T Consensus        45 gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~-i~~~~~DlR~~LP~-~~~~~fD~f~TDPP  121 (243)
T PF01861_consen   45 GKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP-IEAVHYDLRDPLPE-ELRGKFDVFFTDPP  121 (243)
T ss_dssp             T-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT---EEEE---TTS---T-TTSS-BSEEEE---
T ss_pred             CCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc-eEEEEecccccCCH-HHhcCCCEEEeCCC
Confidence            78999998444 35677777777789999999999999999999999997 99999999874332 3458999999975 


Q ss_pred             --cccHHHHHHHHccCcccCe-EEEEEeCCCc--HHHHHHHHHHHHHhCCeeeEEEE
Q 026122          155 --VAEMRILAEYCLPLVRVGG-LFVAAKGHDP--QEEVKNSERAVQLMGASLLQLCS  206 (243)
Q Consensus       155 --~~~~~~~l~~~~~~LkpgG-~l~~~~~~~~--~~~~~~~~~~l~~~g~~~~~~~~  206 (243)
                        ...+.-++......||..| ..++..+...  .....++++.+...|+.+.++..
T Consensus       122 yT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~~gl~i~dii~  178 (243)
T PF01861_consen  122 YTPEGLKLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFLLEMGLVITDIIP  178 (243)
T ss_dssp             SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHHHTS--EEEEEEE
T ss_pred             CCHHHHHHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHHHHCCcCHHHHHh
Confidence              3356778888888888655 5555555443  45556788888899998887643

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.50  E-value=8.2e-07  Score=75.06  Aligned_cols=74  Identities=19%  Similarity=0.163  Sum_probs=60.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      ++.+|||||+|.|.++..|++.  +.+|++||+++.+++..++...  ...|++++++|+........  ..++.|++|-
T Consensus        30 ~~d~VlEIGpG~GaLT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~DaLk~d~~~l--~~~~~vVaNl  103 (259)
T COG0030          30 PGDNVLEIGPGLGALTEPLLER--AARVTAIEIDRRLAEVLKERFA--PYDNLTVINGDALKFDFPSL--AQPYKVVANL  103 (259)
T ss_pred             CCCeEEEECCCCCHHHHHHHhh--cCeEEEEEeCHHHHHHHHHhcc--cccceEEEeCchhcCcchhh--cCCCEEEEcC
Confidence            3789999999999999999976  4689999999999888887765  33579999999999876410  1689999985

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=98.50  E-value=4e-07  Score=78.43  Aligned_cols=102  Identities=16%  Similarity=0.183  Sum_probs=73.6

Q ss_pred             CCeEEEEcCCCChHHHHHHH----HCC----CCEEEEEeCCHHHHHHHHHHH------H------------H-----cC-
Q 026122           76 NLKLVDVGTGAGLPGLVLAI----ACP----DWKVTLLESMNKRCVFLEHAV------S------------L-----TQ-  123 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~----~~~----~~~v~~vD~s~~~~~~a~~~~------~------------~-----~~-  123 (243)
                      .-+|+..||.||-=...+|.    ..+    ..+|+|+|+|+.+++.|++..      +            +     .+ 
T Consensus       116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~  195 (287)
T PRK10611        116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL  195 (287)
T ss_pred             CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence            36999999999985444443    221    368999999999999998752      0            0     01 


Q ss_pred             ------C-CCEEEEEccccccccCCcCCCCceEEEEcCc------ccHHHHHHHHccCcccCeEEEEEe
Q 026122          124 ------L-LNVQIVRGRAETLGKDVSFREQYDVAVARAV------AEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       124 ------~-~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~------~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                            + ..|+|...|+.+.+...  .+.||+|+|+++      .....+++.+.+.|+|||+|++-.
T Consensus       196 ~~v~~~lr~~V~F~~~NL~~~~~~~--~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~  262 (287)
T PRK10611        196 VRVRQELANYVDFQQLNLLAKQWAV--PGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH  262 (287)
T ss_pred             EEEChHHHccCEEEcccCCCCCCcc--CCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence                  1 13788888887643211  268999999763      357899999999999999987744

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=98.49  E-value=2e-06  Score=74.00  Aligned_cols=106  Identities=11%  Similarity=0.061  Sum_probs=74.6

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC-C-C----CEEEEEccccccccCCcC--C-
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ-L-L----NVQIVRGRAETLGKDVSF--R-  144 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~-~----~v~~~~~d~~~~~~~~~~--~-  144 (243)
                      +++..++|+|||-|.-.+-.-++ +-.+++|+|+.+-.++.|++..+... . .    .+.|+.+|...-...+..  + 
T Consensus       116 ~~~~~~~~LgCGKGGDLlKw~kA-gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~d  194 (389)
T KOG1975|consen  116 KRGDDVLDLGCGKGGDLLKWDKA-GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKD  194 (389)
T ss_pred             ccccccceeccCCcccHhHhhhh-cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCC
Confidence            34789999999999875444433 23589999999999999988765431 1 1    278999987653221111  1 


Q ss_pred             CCceEEEEcC--------cccHHHHHHHHccCcccCeEEEEEeC
Q 026122          145 EQYDVAVARA--------VAEMRILAEYCLPLVRVGGLFVAAKG  180 (243)
Q Consensus       145 ~~fD~I~~~~--------~~~~~~~l~~~~~~LkpgG~l~~~~~  180 (243)
                      .+||+|-|.-        ......++..+.+.|+|||.++-..+
T Consensus       195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiP  238 (389)
T KOG1975|consen  195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIP  238 (389)
T ss_pred             CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecC
Confidence            3499998841        23467889999999999999776544

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=98.49  E-value=1.8e-07  Score=84.83  Aligned_cols=63  Identities=27%  Similarity=0.273  Sum_probs=56.4

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccc
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLG  138 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~  138 (243)
                      +.+..++|+.||||.+++.+|+.  ..+|+|||+++.+++-|++|++.+|+.|.+|+++.++++-
T Consensus       382 ~~~k~llDv~CGTG~iglala~~--~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~~  444 (534)
T KOG2187|consen  382 PADKTLLDVCCGTGTIGLALARG--VKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDLF  444 (534)
T ss_pred             CCCcEEEEEeecCCceehhhhcc--ccceeeeecChhhcchhhhcchhcCccceeeeecchhhcc
Confidence            44789999999999999888854  5799999999999999999999999999999999777754

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=98.49  E-value=2.3e-06  Score=80.05  Aligned_cols=78  Identities=12%  Similarity=0.119  Sum_probs=55.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCC--------CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcccccccc--CCcCCC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACP--------DWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK--DVSFRE  145 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~--------~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--~~~~~~  145 (243)
                      ..+|||.|||+|.+.+.++...+        ..+++|+|+++.++..++.++...+..++.+.+.|......  .....+
T Consensus        32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~~  111 (524)
T TIGR02987        32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYLD  111 (524)
T ss_pred             ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccccccccC
Confidence            56999999999999877776543        25799999999999999999887762235555555332111  001125


Q ss_pred             CceEEEEc
Q 026122          146 QYDVAVAR  153 (243)
Q Consensus       146 ~fD~I~~~  153 (243)
                      +||+|++|
T Consensus       112 ~fD~IIgN  119 (524)
T TIGR02987       112 LFDIVITN  119 (524)
T ss_pred             cccEEEeC
Confidence            79999997

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=98.47  E-value=1.9e-06  Score=73.63  Aligned_cols=144  Identities=17%  Similarity=0.154  Sum_probs=78.5

Q ss_pred             CCeEEEEcCCCChH-HHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHH-HcCCC-CEEEEEccccccccCCcCCCCceEEE
Q 026122           76 NLKLVDVGTGAGLP-GLVLAIAC-PDWKVTLLESMNKRCVFLEHAVS-LTQLL-NVQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        76 ~~~VLDiGcG~G~~-~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~-~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      +.+|+=||||+=-+ ++.++..+ ++..|+++|+++++++.+++..+ ..++. +++++++|..+.....   ..||+|+
T Consensus       121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl---~~~DvV~  197 (276)
T PF03059_consen  121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDL---KEYDVVF  197 (276)
T ss_dssp             --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG-------SEEE
T ss_pred             cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccccc---ccCCEEE
Confidence            45999999997544 55666543 56889999999999999999888 55664 4999999998765422   5799999


Q ss_pred             EcC-cc----cHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEEEecCCCCCceEEEEEEeeC
Q 026122          152 ARA-VA----EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSR  225 (243)
Q Consensus       152 ~~~-~~----~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~v~~~k~~  225 (243)
                      ..+ +.    +-.++++.+.+.++||..+++-.+..-..-+-...+-....||....+.   .|..+--..+|+++|..
T Consensus       198 lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~GlR~~LYp~vd~~~l~gf~~~~~~---hP~~~ViNSvv~~rk~~  273 (276)
T PF03059_consen  198 LAALVGMDAEPKEEILEHLAKHMAPGARLVVRSAHGLRSFLYPVVDPEDLRGFEVLAVV---HPTDEVINSVVFARKKQ  273 (276)
T ss_dssp             E-TT-S----SHHHHHHHHHHHS-TTSEEEEEE--GGGGGSS----TGGGTTEEEEEEE------TT---EEEEE----
T ss_pred             EhhhcccccchHHHHHHHHHhhCCCCcEEEEecchhhHHHcCCCCChHHCCCeEEEEEE---CCCCCceeEEEEEEecc
Confidence            866 33    7899999999999999998876543211111000110012277665443   36555577888888764

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=98.44  E-value=7.2e-06  Score=72.85  Aligned_cols=123  Identities=17%  Similarity=0.132  Sum_probs=93.3

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEE
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIA-CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      .++.+|||.++-+|.-+..+|.. ...+.|+|-|.+...+...+.|+.++|+.|..+.+.|..+++... ..++||-|+.
T Consensus       240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~-~~~~fDRVLL  318 (460)
T KOG1122|consen  240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKE-FPGSFDRVLL  318 (460)
T ss_pred             CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccc-cCcccceeee
Confidence            46899999999999977666654 445799999999999999999999999999889999998775332 2358999997


Q ss_pred             cC------c--------------------ccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHH-HHHHHh
Q 026122          153 RA------V--------------------AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSE-RAVQLM  197 (243)
Q Consensus       153 ~~------~--------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~-~~l~~~  197 (243)
                      .+      +                    .-..+++..+..++++||+|+...+.-..+|-+... -+|+++
T Consensus       319 DAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~vV~yaL~K~  390 (460)
T KOG1122|consen  319 DAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENEAVVDYALKKR  390 (460)
T ss_pred             cCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhHHHHHHHHHhC
Confidence            42      0                    014778889999999999999887655444433332 334444

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.43  E-value=2.7e-06  Score=73.07  Aligned_cols=125  Identities=14%  Similarity=0.097  Sum_probs=82.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEEEc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPD-WKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      +.+|||+|||+|....+....++. .+++++|.|+.|++.++...+...-. ..........+....    .+.|+|++.
T Consensus        34 P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~DLvi~s  109 (274)
T PF09243_consen   34 PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPF----PPDDLVIAS  109 (274)
T ss_pred             CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccC----CCCcEEEEe
Confidence            679999999999876666555553 58999999999999998887654321 121211112111111    345999984


Q ss_pred             C------cccHHHHHHHHccCcccCeEEEEEe-CC-CcHHHHHHHHHHHHHhCCeeeEEEE
Q 026122          154 A------VAEMRILAEYCLPLVRVGGLFVAAK-GH-DPQEEVKNSERAVQLMGASLLQLCS  206 (243)
Q Consensus       154 ~------~~~~~~~l~~~~~~LkpgG~l~~~~-~~-~~~~~~~~~~~~l~~~g~~~~~~~~  206 (243)
                      .      ......+++.+++.+.+  .|++++ |. .....+.++++.+...|+.+..-..
T Consensus       110 ~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf~~i~~aR~~l~~~~~~v~APCp  168 (274)
T PF09243_consen  110 YVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPAGFRRIAEARDQLLEKGAHVVAPCP  168 (274)
T ss_pred             hhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChHHHHHHHHHHHHHhhCCCceECCCc
Confidence            2      13467788888887766  777666 32 3356677888888877877765443

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=98.43  E-value=5.7e-07  Score=72.35  Aligned_cols=93  Identities=20%  Similarity=0.252  Sum_probs=60.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC----c---CCCCc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV----S---FREQY  147 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~----~---~~~~f  147 (243)
                      +.+|||+||++|..+..+.... +.++|+|+|+.+.           ...+++..+++|+.+.....    .   ...++
T Consensus        24 ~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~   92 (181)
T PF01728_consen   24 GFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPLQNVSFIQGDITNPENIKDIRKLLPESGEKF   92 (181)
T ss_dssp             TEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSE
T ss_pred             ccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccccceeeeecccchhhHHHhhhhhccccccCc
Confidence            5899999999999987777654 4689999999874           22245667777765422110    0   01489


Q ss_pred             eEEEEcCcc---------------cHHHHHHHHccCcccCeEEEEEe
Q 026122          148 DVAVARAVA---------------EMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       148 D~I~~~~~~---------------~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      |+|++....               -....+..+...|+|||.+++-.
T Consensus        93 dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~  139 (181)
T PF01728_consen   93 DLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKV  139 (181)
T ss_dssp             SEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred             ceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEe
Confidence            999996410               12334445667899999877654

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=98.41  E-value=2.5e-06  Score=75.53  Aligned_cols=106  Identities=14%  Similarity=0.111  Sum_probs=83.7

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHHHCCC--------------------------------C-------EEEEEeCCHHHH
Q 026122           72 SCNSNLKLVDVGTGAGLPGLVLAIACPD--------------------------------W-------KVTLLESMNKRC  112 (243)
Q Consensus        72 ~~~~~~~VLDiGcG~G~~~~~la~~~~~--------------------------------~-------~v~~vD~s~~~~  112 (243)
                      ...++..++|-=||+|.+.+..|...++                                +       .++|+|+++.++
T Consensus       188 gw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i  267 (381)
T COG0116         188 GWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHI  267 (381)
T ss_pred             CCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHH
Confidence            3455678999999999999999887542                                1       377999999999


Q ss_pred             HHHHHHHHHcCCCC-EEEEEccccccccCCcCCCCceEEEEcC-----------cc-cHHHHHHHHccCcccCeEEEEEe
Q 026122          113 VFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAVARA-----------VA-EMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       113 ~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~fD~I~~~~-----------~~-~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      +.|+.|++..|+.+ |+|.++|+.++....   +.+|+||||.           +. =+..+.+.+++.++--+..++..
T Consensus       268 ~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~---~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt  344 (381)
T COG0116         268 EGAKANARAAGVGDLIEFKQADATDLKEPL---EEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTT  344 (381)
T ss_pred             HHHHHHHHhcCCCceEEEEEcchhhCCCCC---CcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence            99999999999976 999999999987642   6899999984           11 14556667777777777766655


Q ss_pred             C
Q 026122          180 G  180 (243)
Q Consensus       180 ~  180 (243)
                      .
T Consensus       345 ~  345 (381)
T COG0116         345 S  345 (381)
T ss_pred             c
Confidence            4

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=98.38  E-value=1.1e-06  Score=70.54  Aligned_cols=95  Identities=15%  Similarity=0.135  Sum_probs=73.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  155 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~  155 (243)
                      +++|||+|+|+|..++..++. +...|++.|+.+.....++.|++.++. ++.+...|+-. ..     ..||+++...+
T Consensus        80 gkrVLd~gagsgLvaIAaa~a-GA~~v~a~d~~P~~~~ai~lNa~angv-~i~~~~~d~~g-~~-----~~~Dl~LagDl  151 (218)
T COG3897          80 GKRVLDLGAGSGLVAIAAARA-GAAEVVAADIDPWLEQAIRLNAAANGV-SILFTHADLIG-SP-----PAFDLLLAGDL  151 (218)
T ss_pred             cceeeecccccChHHHHHHHh-hhHHHHhcCCChHHHHHhhcchhhccc-eeEEeeccccC-CC-----cceeEEEeece
Confidence            899999999999999888866 467899999999999999999999886 48888888776 22     67999998652


Q ss_pred             ----ccHHHHHHHHccCcccCeEEEEEe
Q 026122          156 ----AEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       156 ----~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                          ..-..++. ++..++..|..+++-
T Consensus       152 fy~~~~a~~l~~-~~~~l~~~g~~vlvg  178 (218)
T COG3897         152 FYNHTEADRLIP-WKDRLAEAGAAVLVG  178 (218)
T ss_pred             ecCchHHHHHHH-HHHHHHhCCCEEEEe
Confidence                12344555 566666666655544

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=98.38  E-value=3.5e-06  Score=73.52  Aligned_cols=148  Identities=14%  Similarity=0.107  Sum_probs=88.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHH-------CCCCEEEEEeCCHHHHHHHHHHHHHcCCC--CEEEEEccccccccCCcCCCC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIA-------CPDWKVTLLESMNKRCVFLEHAVSLTQLL--NVQIVRGRAETLGKDVSFREQ  146 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~-------~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~~~~~~~~~~  146 (243)
                      +.+|+|-+||+|.+.+.+...       ....+++|+|+++.++..++.++.-.+..  +..+..+|........ ...+
T Consensus        47 ~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~-~~~~  125 (311)
T PF02384_consen   47 GDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFI-KNQK  125 (311)
T ss_dssp             TEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCT-ST--
T ss_pred             cceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccc-cccc
Confidence            678999999999987666552       35789999999999999999887766653  3568888875543321 1257


Q ss_pred             ceEEEEcC----c--c-------------------cHHHHHHHHccCcccCeEEEEEeCCCc---HHHHHHHHHHHHHhC
Q 026122          147 YDVAVARA----V--A-------------------EMRILAEYCLPLVRVGGLFVAAKGHDP---QEEVKNSERAVQLMG  198 (243)
Q Consensus       147 fD~I~~~~----~--~-------------------~~~~~l~~~~~~LkpgG~l~~~~~~~~---~~~~~~~~~~l~~~g  198 (243)
                      ||+|++|.    .  .                   .-..++..+.+.|++||++.++.+...   ...-..+++.+-+.+
T Consensus       126 ~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~L~~~~~~~~iR~~ll~~~  205 (311)
T PF02384_consen  126 FDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGFLFSSSSEKKIRKYLLENG  205 (311)
T ss_dssp             EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHHHHGSTHHHHHHHHHHHHE
T ss_pred             cccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchhhhccchHHHHHHHHHhhc
Confidence            99999962    1  0                   113588889999999999877764321   111234444443433


Q ss_pred             CeeeEEEEEe---cCCCCCceEEEEEEeeC
Q 026122          199 ASLLQLCSVE---SQSPFGQRTAVVCLKSR  225 (243)
Q Consensus       199 ~~~~~~~~~~---~~~~~~~r~~v~~~k~~  225 (243)
                      . +..+-.+.   +......-.+++++|..
T Consensus       206 ~-i~aVI~Lp~~~F~~t~v~t~ilil~k~~  234 (311)
T PF02384_consen  206 Y-IEAVISLPSNLFKPTGVPTSILILNKKK  234 (311)
T ss_dssp             E-EEEEEE--TTSSSSSSS-EEEEEEEESS
T ss_pred             h-hhEEeecccceecccCcCceEEEEeecc
Confidence            2 33332222   12222355666667665

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=98.38  E-value=1.9e-06  Score=72.53  Aligned_cols=75  Identities=23%  Similarity=0.201  Sum_probs=63.2

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccccccCCcCCCCceEEE
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      +++++.|||+|-|||.++..+...  +.+|+|+|+++.|+...++..+.....+ .+++.+|....+.     ..||.++
T Consensus        56 ~k~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~-----P~fd~cV  128 (315)
T KOG0820|consen   56 LKPTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL-----PRFDGCV  128 (315)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC-----cccceee
Confidence            466899999999999998777765  6899999999999999988887666544 9999999988754     4699999


Q ss_pred             EcC
Q 026122          152 ARA  154 (243)
Q Consensus       152 ~~~  154 (243)
                      +|-
T Consensus       129 sNl  131 (315)
T KOG0820|consen  129 SNL  131 (315)
T ss_pred             ccC
Confidence            973

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=98.37  E-value=1.5e-06  Score=67.21  Aligned_cols=73  Identities=18%  Similarity=0.274  Sum_probs=58.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHH----CCCCEEEEEeCCHHHHHHHHHHHHHcC--C-CCEEEEEccccccccCCcCCCCce
Q 026122           76 NLKLVDVGTGAGLPGLVLAIA----CPDWKVTLLESMNKRCVFLEHAVSLTQ--L-LNVQIVRGRAETLGKDVSFREQYD  148 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~----~~~~~v~~vD~s~~~~~~a~~~~~~~~--~-~~v~~~~~d~~~~~~~~~~~~~fD  148 (243)
                      ..+|+|+|||.|.++..++..    .++.+|++||.++..++.+++..++.+  . .+.++..+++.+....    ...+
T Consensus        26 ~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  101 (141)
T PF13679_consen   26 CITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSS----DPPD  101 (141)
T ss_pred             CCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhccc----CCCe
Confidence            679999999999999999971    267899999999999999999988887  4 4577777777654321    4567


Q ss_pred             EEEE
Q 026122          149 VAVA  152 (243)
Q Consensus       149 ~I~~  152 (243)
                      +++.
T Consensus       102 ~~vg  105 (141)
T PF13679_consen  102 ILVG  105 (141)
T ss_pred             EEEE
Confidence            7775

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=98.36  E-value=1.6e-05  Score=65.08  Aligned_cols=143  Identities=12%  Similarity=0.041  Sum_probs=105.4

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEEE
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      +.+.++.||||=.|++.+.+-+..+...+++.|+++..++.|.++.+++++. .+++..+|....-..   ++.+|+|+.
T Consensus        15 ~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~---~d~~d~ivI   91 (226)
T COG2384          15 KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLEL---EDEIDVIVI   91 (226)
T ss_pred             HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCc---cCCcCEEEE
Confidence            3467799999999999999998888889999999999999999999999985 488888888543222   257998887


Q ss_pred             cCcc--cHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEEEecCCCCCceEEEEEEeeC
Q 026122          153 RAVA--EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSR  225 (243)
Q Consensus       153 ~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~v~~~k~~  225 (243)
                      .++.  -+..++++-.+.|+.=-+++ ..+.....++   ++++.+.+|.+....=+  .....-..++++.+..
T Consensus        92 AGMGG~lI~~ILee~~~~l~~~~rlI-LQPn~~~~~L---R~~L~~~~~~I~~E~il--eE~~kiYEIlv~e~~~  160 (226)
T COG2384          92 AGMGGTLIREILEEGKEKLKGVERLI-LQPNIHTYEL---REWLSANSYEIKAETIL--EEDGKIYEILVVEKSS  160 (226)
T ss_pred             eCCcHHHHHHHHHHhhhhhcCcceEE-ECCCCCHHHH---HHHHHhCCceeeeeeee--cccCeEEEEEEEecCC
Confidence            6544  46788888888776433433 3444555555   45566999988765432  2334457777777765

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.34  E-value=1.5e-05  Score=65.01  Aligned_cols=137  Identities=18%  Similarity=0.230  Sum_probs=85.3

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC----cC-CCC
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV----SF-REQ  146 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~----~~-~~~  146 (243)
                      ++++..|+|+||-+|..+..+++..+ +..|+|||+.+-           -...+|.++++|+.+-....    .. ..+
T Consensus        43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~-----------~~~~~V~~iq~d~~~~~~~~~l~~~l~~~~  111 (205)
T COG0293          43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM-----------KPIPGVIFLQGDITDEDTLEKLLEALGGAP  111 (205)
T ss_pred             ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc-----------ccCCCceEEeeeccCccHHHHHHHHcCCCC
Confidence            35589999999999999988887653 356999999872           12346999999987633210    01 134


Q ss_pred             ceEEEEcCcc--------c-------HHHHHHHHccCcccCeEEEEEe--CCCcHHHHHHHHHHHHHhCCeeeEEEEEec
Q 026122          147 YDVAVARAVA--------E-------MRILAEYCLPLVRVGGLFVAAK--GHDPQEEVKNSERAVQLMGASLLQLCSVES  209 (243)
Q Consensus       147 fD~I~~~~~~--------~-------~~~~l~~~~~~LkpgG~l~~~~--~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~  209 (243)
                      +|+|+|...+        +       ....++-+...|+|||.+++-.  |......+..+.+     .|..+....-. 
T Consensus       112 ~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~-----~F~~v~~~KP~-  185 (205)
T COG0293         112 VDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRR-----LFRKVKIFKPK-  185 (205)
T ss_pred             cceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHH-----hhceeEEecCc-
Confidence            7999985311        1       2455666778999999988643  6555554544433     33334433211 


Q ss_pred             CCCCCceEEEEEEeeCC
Q 026122          210 QSPFGQRTAVVCLKSRR  226 (243)
Q Consensus       210 ~~~~~~r~~v~~~k~~~  226 (243)
                      ......+.+.++.+...
T Consensus       186 aSR~~S~E~y~v~~~~~  202 (205)
T COG0293         186 ASRKRSREIYLVAKGFK  202 (205)
T ss_pred             cccCCCceEEEEEeccc
Confidence            12222456666665543

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=98.33  E-value=1.4e-05  Score=69.92  Aligned_cols=155  Identities=16%  Similarity=0.170  Sum_probs=106.3

Q ss_pred             CCCCCCCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHH--HHHc---CC--CCEEEEEccccccccCCc
Q 026122           71 SSCNSNLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHA--VSLT---QL--LNVQIVRGRAETLGKDVS  142 (243)
Q Consensus        71 ~~~~~~~~VLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~--~~~~---~~--~~v~~~~~d~~~~~~~~~  142 (243)
                      +.++...+||-+|.|-|.-...+. ++| -.+|+.||.+|+|++.++++  .++.   .+  +++++++.|+.++-... 
T Consensus       285 s~~~~a~~vLvlGGGDGLAlRell-kyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a-  362 (508)
T COG4262         285 SSVRGARSVLVLGGGDGLALRELL-KYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTA-  362 (508)
T ss_pred             ccccccceEEEEcCCchHHHHHHH-hCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhh-
Confidence            344556789999999998776665 457 46999999999999999844  3332   23  34999999998875432 


Q ss_pred             CCCCceEEEEcCc-------c--cHHHHHHHHccCcccCeEEEEEeCCC--cHHHHHHHHHHHHHhCCeeeEEEEEecCC
Q 026122          143 FREQYDVAVARAV-------A--EMRILAEYCLPLVRVGGLFVAAKGHD--PQEEVKNSERAVQLMGASLLQLCSVESQS  211 (243)
Q Consensus       143 ~~~~fD~I~~~~~-------~--~~~~~l~~~~~~LkpgG~l~~~~~~~--~~~~~~~~~~~l~~~g~~~~~~~~~~~~~  211 (243)
                       .+.||.||..-.       .  --.++...+++.|+++|.+++-.+..  ..+..-.+...++.+|+...- ..++.| 
T Consensus       363 -~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~vfw~i~aTik~AG~~~~P-yhv~VP-  439 (508)
T COG4262         363 -ADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPRVFWRIDATIKSAGYRVWP-YHVHVP-  439 (508)
T ss_pred             -cccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCceeeeehhHHHhCcceeee-eEEecC-
Confidence             368999998521       1  13677888999999999988866432  223333455677899975533 223333 


Q ss_pred             CCCceEEEEEEeeCCCCCC
Q 026122          212 PFGQRTAVVCLKSRRTPKK  230 (243)
Q Consensus       212 ~~~~r~~v~~~k~~~~~~~  230 (243)
                      ..++=.+++..+..-.++.
T Consensus       440 TFGeWGf~l~~~~~~~fep  458 (508)
T COG4262         440 TFGEWGFILAAPGDADFEP  458 (508)
T ss_pred             cccccceeecccccCCCCC
Confidence            3567777777776555544

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.33  E-value=5.8e-05  Score=61.09  Aligned_cols=147  Identities=17%  Similarity=0.151  Sum_probs=99.3

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEE
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      ++++.+||=+|+-+|.-.-..+...+.+.|+|||.|+....-.-..+++.  +|+-.+.+|+.....-...-+..|+|+.
T Consensus        74 i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R--~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~  151 (231)
T COG1889          74 IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR--PNIIPILEDARKPEKYRHLVEKVDVIYQ  151 (231)
T ss_pred             cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC--CCceeeecccCCcHHhhhhcccccEEEE
Confidence            46699999999999998778887777789999999998765554444432  4677888888763322112257999998


Q ss_pred             cC-cc-cHHHHHHHHccCcccCeEEEEEe-C------CCcHHHHHHHHHHHHHhCCeeeEEEEEecCCCCCceEEEEEEe
Q 026122          153 RA-VA-EMRILAEYCLPLVRVGGLFVAAK-G------HDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLK  223 (243)
Q Consensus       153 ~~-~~-~~~~~l~~~~~~LkpgG~l~~~~-~------~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~v~~~k  223 (243)
                      .- .. ..+-+...+...||+||.+++.. .      .+..+-+++..+.++..+|++.+...  +..-+.++.+|+.+.
T Consensus       152 DVAQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i~e~~~--LePye~DH~~i~~~~  229 (231)
T COG1889         152 DVAQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGGFEILEVVD--LEPYEKDHALIVAKY  229 (231)
T ss_pred             ecCCchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhcCceeeEEec--cCCcccceEEEEEee
Confidence            53 33 34666778899999999877553 1      22334445556678888988876643  333344555555443

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=98.33  E-value=3.3e-06  Score=66.23  Aligned_cols=103  Identities=19%  Similarity=0.224  Sum_probs=76.3

Q ss_pred             CCCCeEEEEcCCCChHHHHHHH-HCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccc--cCCcCCCCceEE
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAI-ACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLG--KDVSFREQYDVA  150 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~-~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~~~fD~I  150 (243)
                      +++.-|||+|.|||.++-.+.. ..+...++++|.|++.+....+..     +.++++++|+.++.  ........||.|
T Consensus        47 esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~-----p~~~ii~gda~~l~~~l~e~~gq~~D~v  121 (194)
T COG3963          47 ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY-----PGVNIINGDAFDLRTTLGEHKGQFFDSV  121 (194)
T ss_pred             ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC-----CCccccccchhhHHHHHhhcCCCeeeeE
Confidence            3477999999999999765554 345679999999999877765542     34779999998876  221223569999


Q ss_pred             EEcC------cccHHHHHHHHccCcccCeEEEEEe-CC
Q 026122          151 VARA------VAEMRILAEYCLPLVRVGGLFVAAK-GH  181 (243)
Q Consensus       151 ~~~~------~~~~~~~l~~~~~~LkpgG~l~~~~-~~  181 (243)
                      +|.-      ....-++++.+...|.+||.++-.. |+
T Consensus       122 iS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYgp  159 (194)
T COG3963         122 ISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYGP  159 (194)
T ss_pred             EeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEecC
Confidence            9953      2345778899999999999988554 53

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=98.28  E-value=1.6e-05  Score=68.68  Aligned_cols=77  Identities=18%  Similarity=0.235  Sum_probs=48.3

Q ss_pred             CCeEEEEcCCCChH-HHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc-CCCC-EEEEEccccccccC--CcCCCCceEE
Q 026122           76 NLKLVDVGTGAGLP-GLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT-QLLN-VQIVRGRAETLGKD--VSFREQYDVA  150 (243)
Q Consensus        76 ~~~VLDiGcG~G~~-~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~~~-v~~~~~d~~~~~~~--~~~~~~fD~I  150 (243)
                      .-++||||||.-.+ .+..++.+ +++++|.|+++..++.|+++++++ ++.+ |+++...-.+....  ....+.||+.
T Consensus       103 ~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft  181 (299)
T PF05971_consen  103 KVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT  181 (299)
T ss_dssp             --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred             ceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence            45899999998765 44555554 899999999999999999999999 8864 88876643221111  1112579999


Q ss_pred             EEc
Q 026122          151 VAR  153 (243)
Q Consensus       151 ~~~  153 (243)
                      +||
T Consensus       182 mCN  184 (299)
T PF05971_consen  182 MCN  184 (299)
T ss_dssp             EE-
T ss_pred             ecC
Confidence            997

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=98.27  E-value=5.2e-07  Score=66.05  Aligned_cols=96  Identities=20%  Similarity=0.225  Sum_probs=42.7

Q ss_pred             EEEcCCCChHHHHHHHHCCC---CEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEEEcCc
Q 026122           80 VDVGTGAGLPGLVLAIACPD---WKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVARAV  155 (243)
Q Consensus        80 LDiGcG~G~~~~~la~~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~  155 (243)
                      |||||..|..++.++...+.   .+++++|..+. .+..++.+++.++. ++++++++..+...... .+++|+|+..+.
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~-~~~~dli~iDg~   78 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLP-DGPIDLIFIDGD   78 (106)
T ss_dssp             --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHH-H--EEEEEEES-
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcC-CCCEEEEEECCC
Confidence            68999999988787765433   37999999985 33455555555554 59999999877532211 268999999874


Q ss_pred             c---cHHHHHHHHccCcccCeEEEE
Q 026122          156 A---EMRILAEYCLPLVRVGGLFVA  177 (243)
Q Consensus       156 ~---~~~~~l~~~~~~LkpgG~l~~  177 (243)
                      .   ....-++.+.+.|+|||.+++
T Consensus        79 H~~~~~~~dl~~~~~~l~~ggviv~  103 (106)
T PF13578_consen   79 HSYEAVLRDLENALPRLAPGGVIVF  103 (106)
T ss_dssp             --HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             CCHHHHHHHHHHHHHHcCCCeEEEE
Confidence            3   456667788999999999776

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=98.25  E-value=2.2e-05  Score=68.77  Aligned_cols=114  Identities=18%  Similarity=0.137  Sum_probs=79.1

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      .++.++|||||++|..+..+.+.  +.+|+|||..+-    + ..+.  ...+|+.+.+|.....+.   .+.+|.++|.
T Consensus       210 ~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l----~-~~L~--~~~~V~h~~~d~fr~~p~---~~~vDwvVcD  277 (357)
T PRK11760        210 APGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPM----A-QSLM--DTGQVEHLRADGFKFRPP---RKNVDWLVCD  277 (357)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhc----C-Hhhh--CCCCEEEEeccCcccCCC---CCCCCEEEEe
Confidence            45899999999999999888865  569999996651    2 2222  234588998888776542   2689999999


Q ss_pred             CcccHHHHHHHHccCcccC--eEEEEEe---CCCcHHHHHH----HHHHHHHhCC
Q 026122          154 AVAEMRILAEYCLPLVRVG--GLFVAAK---GHDPQEEVKN----SERAVQLMGA  199 (243)
Q Consensus       154 ~~~~~~~~l~~~~~~Lkpg--G~l~~~~---~~~~~~~~~~----~~~~l~~~g~  199 (243)
                      ....+..+.+.+.++|..|  ...++..   +...-+++..    +.+.+.+.|.
T Consensus       278 mve~P~rva~lm~~Wl~~g~cr~aIfnLKlpmk~r~~~v~~~l~~i~~~l~~~g~  332 (357)
T PRK11760        278 MVEKPARVAELMAQWLVNGWCREAIFNLKLPMKKRYEEVRQCLELIEEQLDENGI  332 (357)
T ss_pred             cccCHHHHHHHHHHHHhcCcccEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence            8888888889888888776  2334332   2233444444    3344556676

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=98.22  E-value=5.7e-06  Score=70.54  Aligned_cols=101  Identities=14%  Similarity=0.108  Sum_probs=71.5

Q ss_pred             CCeEEEEcCCCChH----HHHHHHHCC-----CCEEEEEeCCHHHHHHHHHH------H---------HHc------C--
Q 026122           76 NLKLVDVGTGAGLP----GLVLAIACP-----DWKVTLLESMNKRCVFLEHA------V---------SLT------Q--  123 (243)
Q Consensus        76 ~~~VLDiGcG~G~~----~~~la~~~~-----~~~v~~vD~s~~~~~~a~~~------~---------~~~------~--  123 (243)
                      .-+|+-.||+||-=    ++.+....+     ..+|+|+|+|..+++.|+.-      .         ++.      +  
T Consensus        97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y  176 (268)
T COG1352          97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY  176 (268)
T ss_pred             ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence            56899999999973    334444443     47999999999999988542      1         010      1  


Q ss_pred             -----C-CCEEEEEccccccccCCcCCCCceEEEEcCcc------cHHHHHHHHccCcccCeEEEEEe
Q 026122          124 -----L-LNVQIVRGRAETLGKDVSFREQYDVAVARAVA------EMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       124 -----~-~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~------~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                           + ..|.|...|+.+-..   ..+.||+|+|+++.      ...++++..+..|+|||.|++=.
T Consensus       177 ~v~~~ir~~V~F~~~NLl~~~~---~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~  241 (268)
T COG1352         177 RVKEELRKMVRFRRHNLLDDSP---FLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH  241 (268)
T ss_pred             EEChHHhcccEEeecCCCCCcc---ccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence                 0 125566666655331   23679999999743      46889999999999999999844

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=98.21  E-value=2.6e-05  Score=58.65  Aligned_cols=98  Identities=18%  Similarity=0.146  Sum_probs=67.6

Q ss_pred             EEEEcCCCChHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccc--cccCCcCCCCceEEEEcC
Q 026122           79 LVDVGTGAGLPGLVLAIACPD-WKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAET--LGKDVSFREQYDVAVARA  154 (243)
Q Consensus        79 VLDiGcG~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~--~~~~~~~~~~fD~I~~~~  154 (243)
                      ++|+|||+|... .++...+. ..++++|.++.+++.++..... .... +.+..++...  .+...  ...||++.+..
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~d~~~~~~  127 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPFED--SASFDLVISLL  127 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCCCC--CCceeEEeeee
Confidence            999999999875 34444333 4899999999998885444433 2222 6788888766  33321  03799994433


Q ss_pred             cc---cHHHHHHHHccCcccCeEEEEEeC
Q 026122          155 VA---EMRILAEYCLPLVRVGGLFVAAKG  180 (243)
Q Consensus       155 ~~---~~~~~l~~~~~~LkpgG~l~~~~~  180 (243)
                      ..   .....+..+.+.++|+|.+++...
T Consensus       128 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~  156 (257)
T COG0500         128 VLHLLPPAKALRELLRVLKPGGRLVLSDL  156 (257)
T ss_pred             ehhcCCHHHHHHHHHHhcCCCcEEEEEec
Confidence            21   258889999999999999887664

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=98.21  E-value=7.1e-05  Score=57.49  Aligned_cols=120  Identities=18%  Similarity=0.173  Sum_probs=74.2

Q ss_pred             EEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEEEcC----------c---ccHHHHHHHHc
Q 026122          101 KVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVARA----------V---AEMRILAEYCL  166 (243)
Q Consensus       101 ~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~~~~----------~---~~~~~~l~~~~  166 (243)
                      +|+|.|+.+++++.+++..++.++. +++++..+=+++..... .++.|+++.|-          .   ..--..++.+.
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~-~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al   79 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIP-EGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAAL   79 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT---S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHH
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCc-cCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHH
Confidence            6999999999999999999999885 49999887777654321 13799999972          1   12355667888


Q ss_pred             cCcccCeEEEEEe--CCCc-HHHHHHHHHHHHH---hCCeeeEEEEEecCCCCCceEEEEEEe
Q 026122          167 PLVRVGGLFVAAK--GHDP-QEEVKNSERAVQL---MGASLLQLCSVESQSPFGQRTAVVCLK  223 (243)
Q Consensus       167 ~~LkpgG~l~~~~--~~~~-~~~~~~~~~~l~~---~g~~~~~~~~~~~~~~~~~r~~v~~~k  223 (243)
                      ++|+|||.+.++.  |... .+|...+.+.++.   ..|.+.....+.  .......+++++|
T Consensus        80 ~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~~~~~~V~~~~~~N--~~~~pp~l~~ieK  140 (140)
T PF06962_consen   80 ELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLDQKEFNVLKYQFIN--QKNNPPLLVIIEK  140 (140)
T ss_dssp             HHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-TTTEEEEEEEESS---SS---EEEEEEE
T ss_pred             HhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCcceEEEEEEEccC--CCCCCCEEEEEEC
Confidence            8999999988776  4333 3444445555544   445554443322  3333455555554

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=98.20  E-value=1.9e-05  Score=69.20  Aligned_cols=105  Identities=13%  Similarity=0.016  Sum_probs=71.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHC----CCCEEEEEeCCHHHHHHHHHHHHHcCCCC--EEEEEcccccccc---CCcCCC
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIAC----PDWKVTLLESMNKRCVFLEHAVSLTQLLN--VQIVRGRAETLGK---DVSFRE  145 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~--v~~~~~d~~~~~~---~~~~~~  145 (243)
                      ++..++|+|||+|.-...|....    ...+.++||+|.++++.+.+.+.....+.  +.-+++|..+...   .+....
T Consensus        76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~  155 (319)
T TIGR03439        76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRS  155 (319)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccC
Confidence            36789999999999654433322    24689999999999998888887444444  4458888876421   101123


Q ss_pred             CceEEEEcC--c-----ccHHHHHHHHcc-CcccCeEEEEEe
Q 026122          146 QYDVAVARA--V-----AEMRILAEYCLP-LVRVGGLFVAAK  179 (243)
Q Consensus       146 ~fD~I~~~~--~-----~~~~~~l~~~~~-~LkpgG~l~~~~  179 (243)
                      ...+++.-+  +     .....+++.+.+ .|+|||.+++-.
T Consensus       156 ~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~  197 (319)
T TIGR03439       156 RPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL  197 (319)
T ss_pred             CccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence            466777632  2     245688889999 999999988744

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=98.17  E-value=5.4e-05  Score=64.57  Aligned_cols=128  Identities=14%  Similarity=0.105  Sum_probs=87.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc---------------------------------
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT---------------------------------  122 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~---------------------------------  122 (243)
                      ..+||==|||-|+++..+|..  +..+.|.|.|-.|+-..+-.....                                 
T Consensus        57 ~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv  134 (270)
T PF07942_consen   57 KIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDV  134 (270)
T ss_pred             ccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCc
Confidence            568999999999999999976  789999999998865443322210                                 


Q ss_pred             -------CCCCEEEEEccccccccCCcCCCCceEEEEc----CcccHHHHHHHHccCcccCeEEEEEeCC-------C--
Q 026122          123 -------QLLNVQIVRGRAETLGKDVSFREQYDVAVAR----AVAEMRILAEYCLPLVRVGGLFVAAKGH-------D--  182 (243)
Q Consensus       123 -------~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~----~~~~~~~~l~~~~~~LkpgG~l~~~~~~-------~--  182 (243)
                             .-.++....||+.++-......++||+|+..    ...++-+.++.+.++|||||. ++-.|+       .  
T Consensus       135 ~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~-WIN~GPLlyh~~~~~~  213 (270)
T PF07942_consen  135 DPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGY-WINFGPLLYHFEPMSI  213 (270)
T ss_pred             CcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCE-EEecCCccccCCCCCC
Confidence                   0012445556666554332123689998874    344688999999999999996 443332       1  


Q ss_pred             -----cHHHHHHHHHHHHHhCCeeeEEEE
Q 026122          183 -----PQEEVKNSERAVQLMGASLLQLCS  206 (243)
Q Consensus       183 -----~~~~~~~~~~~l~~~g~~~~~~~~  206 (243)
                           ..-...++...+++.||+++..+.
T Consensus       214 ~~~~sveLs~eEi~~l~~~~GF~~~~~~~  242 (270)
T PF07942_consen  214 PNEMSVELSLEEIKELIEKLGFEIEKEES  242 (270)
T ss_pred             CCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence                 112245677777899999887654

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=98.16  E-value=2.3e-06  Score=70.40  Aligned_cols=107  Identities=17%  Similarity=0.175  Sum_probs=78.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~-  154 (243)
                      ...++|||||-|.+...+... .-.+++.+|-|-.|++.++.... .++ .+....+|-+.++...   +++|+|++.- 
T Consensus        73 fp~a~diGcs~G~v~rhl~~e-~vekli~~DtS~~M~~s~~~~qd-p~i-~~~~~v~DEE~Ldf~e---ns~DLiisSls  146 (325)
T KOG2940|consen   73 FPTAFDIGCSLGAVKRHLRGE-GVEKLIMMDTSYDMIKSCRDAQD-PSI-ETSYFVGDEEFLDFKE---NSVDLIISSLS  146 (325)
T ss_pred             CcceeecccchhhhhHHHHhc-chhheeeeecchHHHHHhhccCC-Cce-EEEEEecchhcccccc---cchhhhhhhhh
Confidence            357999999999998666544 34689999999999887765422 222 2566778887777653   8999999864 


Q ss_pred             ---cccHHHHHHHHccCcccCeEEEEEe-CCCcHHHHH
Q 026122          155 ---VAEMRILAEYCLPLVRVGGLFVAAK-GHDPQEEVK  188 (243)
Q Consensus       155 ---~~~~~~~l~~~~~~LkpgG~l~~~~-~~~~~~~~~  188 (243)
                         ..++...+..|+..|||+|.++... |.++.-|++
T Consensus       147 lHW~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR  184 (325)
T KOG2940|consen  147 LHWTNDLPGSMIQCKLALKPDGLFIASMLGGDTLYELR  184 (325)
T ss_pred             hhhhccCchHHHHHHHhcCCCccchhHHhccccHHHHH
Confidence               3367778889999999999988654 555544443

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=98.14  E-value=5.1e-05  Score=61.44  Aligned_cols=144  Identities=16%  Similarity=0.159  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHhc--cCCccccCChHH-HHHHhHhhhcccCCCcccccCccCCCCCCCCCeEEEEcCCCChHHHHHHHHCC
Q 026122           22 GLFLKKRKQNLQ--KMNLTAVKDVNE-VMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLVLAIACP   98 (243)
Q Consensus        22 ~~~~~~~~~~n~--~~n~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~   98 (243)
                      +.||+.-..-|-  ..++.-+.++++ -|.+++.+.....               +..-.+.|||||-|.+.+.++-.+|
T Consensus        19 Kr~YRQRAHsNP~sDh~l~yPvsP~~mDWS~~yp~f~~~~---------------~~kvefaDIGCGyGGLlv~Lsp~fP   83 (249)
T KOG3115|consen   19 KRYYRQRAHSNPLSDHTLEYPVSPQEMDWSKYYPDFRRAL---------------NKKVEFADIGCGYGGLLMKLAPKFP   83 (249)
T ss_pred             HHHHHHHhhcCCCccCcccCCCChHhCcHHHhhhhhhhhc---------------cccceEEeeccCccchhhhccccCc
Confidence            566666666553  344444444443 4555554432211               1134789999999999999999999


Q ss_pred             CCEEEEEeCCHHHHHHHHHHHHHcC-------CCCEEEEEccccccccCCcCCCCc--eEEEEcC----------cccHH
Q 026122           99 DWKVTLLESMNKRCVFLEHAVSLTQ-------LLNVQIVRGRAETLGKDVSFREQY--DVAVARA----------VAEMR  159 (243)
Q Consensus        99 ~~~v~~vD~s~~~~~~a~~~~~~~~-------~~~v~~~~~d~~~~~~~~~~~~~f--D~I~~~~----------~~~~~  159 (243)
                      +.-+.|.|+--+..+..++.++.++       ..|+.+...+...+.+..-..++.  ++.+...          -.--.
T Consensus        84 dtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLskmff~fpdpHfk~~khk~rii~~  163 (249)
T KOG3115|consen   84 DTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLSKMFFLFPDPHFKARKHKWRIITS  163 (249)
T ss_pred             cceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccccceeecCChhHhhhhccceeech
Confidence            9999999999998899988888765       556777766665543221001121  2222211          01125


Q ss_pred             HHHHHHccCcccCeEEEEEeC
Q 026122          160 ILAEYCLPLVRVGGLFVAAKG  180 (243)
Q Consensus       160 ~~l~~~~~~LkpgG~l~~~~~  180 (243)
                      .++.+..-+|++||.++.+..
T Consensus       164 ~l~~eyay~l~~gg~~ytitD  184 (249)
T KOG3115|consen  164 TLLSEYAYVLREGGILYTITD  184 (249)
T ss_pred             hHHHHHHhhhhcCceEEEEee
Confidence            566777789999999998765

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=98.12  E-value=2.3e-05  Score=66.94  Aligned_cols=75  Identities=16%  Similarity=0.119  Sum_probs=58.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      +..|||||.|+|.++..++...  .+|+++|+++.+++..++...  ...+++++++|+.++............|++|-
T Consensus        31 ~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~--~~~~~~vi~~D~l~~~~~~~~~~~~~~vv~Nl  105 (262)
T PF00398_consen   31 GDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFA--SNPNVEVINGDFLKWDLYDLLKNQPLLVVGNL  105 (262)
T ss_dssp             TSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCT--TCSSEEEEES-TTTSCGGGHCSSSEEEEEEEE
T ss_pred             CCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhh--hcccceeeecchhccccHHhhcCCceEEEEEe
Confidence            7899999999999999998774  799999999998888877544  33579999999998765421123556777763

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=98.10  E-value=4.4e-05  Score=66.25  Aligned_cols=77  Identities=9%  Similarity=0.048  Sum_probs=61.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC-c-CCCCceEEEE
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-S-FREQYDVAVA  152 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-~-~~~~fD~I~~  152 (243)
                      ++..++|.=+|.|..+..++...+.++|+|+|.++.+++.+++..+..+ .++++++++..++.... . ..+++|.|+.
T Consensus        20 ~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~-~R~~~i~~nF~~l~~~l~~~~~~~vDgIl~   98 (305)
T TIGR00006        20 PDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFE-GRVVLIHDNFANFFEHLDELLVTKIDGILV   98 (305)
T ss_pred             CCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcC-CcEEEEeCCHHHHHHHHHhcCCCcccEEEE
Confidence            3789999999999999999887766899999999999999998876543 36999999988764211 0 1146899888

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=98.09  E-value=4.8e-05  Score=62.12  Aligned_cols=106  Identities=19%  Similarity=0.221  Sum_probs=78.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      ++.+||.||-|-|...-.+..+.|..+ +-||..++.++..+...-.- -.||.++.+.+++..... .++.||-|+-..
T Consensus       101 kggrvLnVGFGMgIidT~iQe~~p~~H-~IiE~hp~V~krmr~~gw~e-k~nViil~g~WeDvl~~L-~d~~FDGI~yDT  177 (271)
T KOG1709|consen  101 KGGRVLNVGFGMGIIDTFIQEAPPDEH-WIIEAHPDVLKRMRDWGWRE-KENVIILEGRWEDVLNTL-PDKHFDGIYYDT  177 (271)
T ss_pred             CCceEEEeccchHHHHHHHhhcCCcce-EEEecCHHHHHHHHhccccc-ccceEEEecchHhhhccc-cccCcceeEeec
Confidence            389999999999999867766666655 55999998666555442211 136999999998865432 236799999877


Q ss_pred             cc----cHHHHHHHHccCcccCeEEEEEeCCCc
Q 026122          155 VA----EMRILAEYCLPLVRVGGLFVAAKGHDP  183 (243)
Q Consensus       155 ~~----~~~~~l~~~~~~LkpgG~l~~~~~~~~  183 (243)
                      .+    ++..+.+.+.++|||+|.+-+..+...
T Consensus       178 y~e~yEdl~~~hqh~~rLLkP~gv~SyfNg~~~  210 (271)
T KOG1709|consen  178 YSELYEDLRHFHQHVVRLLKPEGVFSYFNGLGA  210 (271)
T ss_pred             hhhHHHHHHHHHHHHhhhcCCCceEEEecCccc
Confidence            53    567777899999999999988876443

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=98.07  E-value=9.4e-06  Score=72.17  Aligned_cols=103  Identities=20%  Similarity=0.256  Sum_probs=83.0

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccccccCCcCCCCceEE
Q 026122           72 SCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVA  150 (243)
Q Consensus        72 ~~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~fD~I  150 (243)
                      .+.++..++|+|||.|.+...++. +..+.++|+|.++..+..+........+.+ ..++.+|+...+..+   +.||.+
T Consensus       107 ~~~~~~~~~~~~~g~~~~~~~i~~-f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fed---n~fd~v  182 (364)
T KOG1269|consen  107 SCFPGSKVLDVGTGVGGPSRYIAV-FKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFED---NTFDGV  182 (364)
T ss_pred             cCcccccccccCcCcCchhHHHHH-hccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCc---cccCcE
Confidence            345577899999999999877774 457899999999998888777777666654 455888888877654   789999


Q ss_pred             EEcC----cccHHHHHHHHccCcccCeEEEEE
Q 026122          151 VARA----VAEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       151 ~~~~----~~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                      .+..    ..+...+++++++.++|||.++..
T Consensus       183 ~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~  214 (364)
T KOG1269|consen  183 RFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVK  214 (364)
T ss_pred             EEEeecccCCcHHHHHHHHhcccCCCceEEeH
Confidence            9854    457899999999999999998854

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=98.04  E-value=9.9e-05  Score=60.54  Aligned_cols=127  Identities=13%  Similarity=0.077  Sum_probs=85.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~-  154 (243)
                      .-++|||||=+..+.  ++. .+-..|+.||+++.               .-.+.++|+.+.+.+....++||+|.+.- 
T Consensus        52 ~lrlLEVGals~~N~--~s~-~~~fdvt~IDLns~---------------~~~I~qqDFm~rplp~~~~e~FdvIs~SLV  113 (219)
T PF11968_consen   52 KLRLLEVGALSTDNA--CST-SGWFDVTRIDLNSQ---------------HPGILQQDFMERPLPKNESEKFDVISLSLV  113 (219)
T ss_pred             cceEEeecccCCCCc--ccc-cCceeeEEeecCCC---------------CCCceeeccccCCCCCCcccceeEEEEEEE
Confidence            369999999877764  332 34467999999862               24577788888765422347899999853 


Q ss_pred             ---cc---cHHHHHHHHccCcccCeE-----EEEEeCCC-----cHHHHHHHHHHHHHhCCeeeEEEEEecCCCCCceEE
Q 026122          155 ---VA---EMRILAEYCLPLVRVGGL-----FVAAKGHD-----PQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTA  218 (243)
Q Consensus       155 ---~~---~~~~~l~~~~~~LkpgG~-----l~~~~~~~-----~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~  218 (243)
                         ++   ..-++++.+.+.|+|+|.     ++++.+..     ..-....+...++..||..++.+.      ...-+.
T Consensus       114 LNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~~~~~~------~~Kl~y  187 (219)
T PF11968_consen  114 LNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTRVKYKK------SKKLAY  187 (219)
T ss_pred             EeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEEEEEEe------cCeEEE
Confidence               22   467899999999999999     88776421     112234567778899997766543      223444


Q ss_pred             EEEEeeCC
Q 026122          219 VVCLKSRR  226 (243)
Q Consensus       219 v~~~k~~~  226 (243)
                      .+.++...
T Consensus       188 ~l~r~~~~  195 (219)
T PF11968_consen  188 WLFRKSGK  195 (219)
T ss_pred             EEEeecCC
Confidence            55555433

>KOG2730 consensus Methylase [General function prediction only]

Probab=98.00  E-value=4.7e-06  Score=68.09  Aligned_cols=76  Identities=14%  Similarity=0.163  Sum_probs=62.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccccccCCcC-CCCceEEEEc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSF-REQYDVAVAR  153 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~-~~~fD~I~~~  153 (243)
                      ...|+|.-||.|..++..|..+  +.|++||+++..+.+|++|++-.|+++ |+|++||+.++...... ...+|+|+..
T Consensus        95 ~~~iidaf~g~gGntiqfa~~~--~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s  172 (263)
T KOG2730|consen   95 AEVIVDAFCGVGGNTIQFALQG--PYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS  172 (263)
T ss_pred             cchhhhhhhcCCchHHHHHHhC--CeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC
Confidence            5689999999999999999774  689999999999999999999999975 99999999886432111 1246687764

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.00  E-value=1.2e-05  Score=70.51  Aligned_cols=102  Identities=20%  Similarity=0.278  Sum_probs=87.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  155 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~  155 (243)
                      ..+|+|-=||||.=++..|...+..+|+.=|+|+++++.+++|++.+...+..+++.|+..+-...  ...||+|=...+
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~--~~~fd~IDiDPF  130 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHEL--HRAFDVIDIDPF  130 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhc--CCCccEEecCCC
Confidence            468999999999999999988776699999999999999999999996566778888887765431  267999988888


Q ss_pred             ccHHHHHHHHccCcccCeEEEEEe
Q 026122          156 AEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       156 ~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      ..+..+++.+.+.++.||.+.+..
T Consensus       131 GSPaPFlDaA~~s~~~~G~l~vTA  154 (380)
T COG1867         131 GSPAPFLDAALRSVRRGGLLCVTA  154 (380)
T ss_pred             CCCchHHHHHHHHhhcCCEEEEEe
Confidence            889999999999999999988754

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=97.99  E-value=4e-05  Score=68.70  Aligned_cols=102  Identities=19%  Similarity=0.241  Sum_probs=79.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCC--EEEEEccccccccCCcCCCCceEEEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLLN--VQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~--v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      +.+|||.=+|||.=++..+...+ ..+|++-|+|+++++.+++|++.+++..  +++.+.|+..+-..  ....||+|=.
T Consensus        50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~--~~~~fD~IDl  127 (377)
T PF02005_consen   50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYS--RQERFDVIDL  127 (377)
T ss_dssp             -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCH--STT-EEEEEE
T ss_pred             CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhh--ccccCCEEEe
Confidence            45899999999999999998844 4699999999999999999999999865  88999998886421  1378999999


Q ss_pred             cCcccHHHHHHHHccCcccCeEEEEEe
Q 026122          153 RAVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       153 ~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      ........+++.+.+.++.||.+++..
T Consensus       128 DPfGSp~pfldsA~~~v~~gGll~vTa  154 (377)
T PF02005_consen  128 DPFGSPAPFLDSALQAVKDGGLLCVTA  154 (377)
T ss_dssp             --SS--HHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCCccHhHHHHHHHhhcCCEEEEec
Confidence            988899999999999999999999865

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=97.99  E-value=0.00013  Score=58.44  Aligned_cols=96  Identities=16%  Similarity=0.140  Sum_probs=61.0

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEc-cccccccC-----CcCC
Q 026122           72 SCNSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRG-RAETLGKD-----VSFR  144 (243)
Q Consensus        72 ~~~~~~~VLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~-d~~~~~~~-----~~~~  144 (243)
                      .++++.+|||+||.+|..+.-..+.. |.+.|.|||+-.-           .....+.++++ |+.+....     ....
T Consensus        66 ~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~-----------~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~  134 (232)
T KOG4589|consen   66 FLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI-----------EPPEGATIIQGNDVTDPETYRKIFEALPN  134 (232)
T ss_pred             ccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec-----------cCCCCcccccccccCCHHHHHHHHHhCCC
Confidence            35779999999999999985555554 8899999998641           12233556665 65552110     0012


Q ss_pred             CCceEEEEcCc--------ccHHHHH-------HHHccCcccCeEEEEE
Q 026122          145 EQYDVAVARAV--------AEMRILA-------EYCLPLVRVGGLFVAA  178 (243)
Q Consensus       145 ~~fD~I~~~~~--------~~~~~~l-------~~~~~~LkpgG~l~~~  178 (243)
                      .+.|+|+|...        .+....+       .-+...++|+|.+++-
T Consensus       135 r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK  183 (232)
T KOG4589|consen  135 RPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCK  183 (232)
T ss_pred             CcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEE
Confidence            57999999531        1223333       3345677899998864

>PRK10742 putative methyltransferase; Provisional

Probab=97.98  E-value=3.6e-05  Score=64.66  Aligned_cols=76  Identities=21%  Similarity=0.281  Sum_probs=62.3

Q ss_pred             CCCC--eEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc------C--C-CCEEEEEccccccccCCc
Q 026122           74 NSNL--KLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT------Q--L-LNVQIVRGRAETLGKDVS  142 (243)
Q Consensus        74 ~~~~--~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~------~--~-~~v~~~~~d~~~~~~~~~  142 (243)
                      +++.  +|||+-+|+|..++.++..  +++|+++|.++......+.+.++.      +  + .+++++++|..++...  
T Consensus        85 k~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~--  160 (250)
T PRK10742         85 KGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD--  160 (250)
T ss_pred             CCCCCCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhh--
Confidence            4455  8999999999999888855  678999999999999999999885      3  2 4699999998886543  


Q ss_pred             CCCCceEEEEc
Q 026122          143 FREQYDVAVAR  153 (243)
Q Consensus       143 ~~~~fD~I~~~  153 (243)
                      ...+||+|+..
T Consensus       161 ~~~~fDVVYlD  171 (250)
T PRK10742        161 ITPRPQVVYLD  171 (250)
T ss_pred             CCCCCcEEEEC
Confidence            12579999995

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.98  E-value=0.00033  Score=58.20  Aligned_cols=143  Identities=17%  Similarity=0.134  Sum_probs=91.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccccccCCcCCCCceEEEEc
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      ++..+||||+-||.++-.+. ..++.+|+|||.....+..--++     -.+ +..-..++..+.... ..+..|++++.
T Consensus        79 k~kv~LDiGsSTGGFTd~lL-q~gAk~VyavDVG~~Ql~~kLR~-----d~rV~~~E~tN~r~l~~~~-~~~~~d~~v~D  151 (245)
T COG1189          79 KGKVVLDIGSSTGGFTDVLL-QRGAKHVYAVDVGYGQLHWKLRN-----DPRVIVLERTNVRYLTPED-FTEKPDLIVID  151 (245)
T ss_pred             CCCEEEEecCCCccHHHHHH-HcCCcEEEEEEccCCccCHhHhc-----CCcEEEEecCChhhCCHHH-cccCCCeEEEE
Confidence            48899999999999985555 45678999999987544332111     123 333444566554432 23568899985


Q ss_pred             -CcccHHHHHHHHccCcccCeEEEEEeCC-------------------CcHHHHHHHHHHHHHhCCeeeEEEEEecCCCC
Q 026122          154 -AVAEMRILAEYCLPLVRVGGLFVAAKGH-------------------DPQEEVKNSERAVQLMGASLLQLCSVESQSPF  213 (243)
Q Consensus       154 -~~~~~~~~l~~~~~~LkpgG~l~~~~~~-------------------~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  213 (243)
                       ++..+..++..+..+++++|.++...-+                   .....+.++.+++...||.+..+..-...+..
T Consensus       152 vSFISL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl~~Spi~G~~  231 (245)
T COG1189         152 VSFISLKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKGLIKSPIKGGK  231 (245)
T ss_pred             eehhhHHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEeeeEccCccCCC
Confidence             3567888888899999999887754321                   12233455667777889988887653344444


Q ss_pred             CceEEEEEEee
Q 026122          214 GQRTAVVCLKS  224 (243)
Q Consensus       214 ~~r~~v~~~k~  224 (243)
                      +.....+.-++
T Consensus       232 GNiE~l~~~~k  242 (245)
T COG1189         232 GNIEFLLLLKK  242 (245)
T ss_pred             CcEeeeeeeec
Confidence            44455444443

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=97.95  E-value=2.6e-06  Score=69.03  Aligned_cols=120  Identities=17%  Similarity=0.092  Sum_probs=81.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEE-EccccccccCCcCCCCceEEEEcC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIV-RGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~-~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      +.++||+|+|.|-++..++-.+  .+|++.|.|..|....++    .+.   .++ ..+..+.      +-+||+|.|-+
T Consensus       113 ~~~lLDlGAGdGeit~~m~p~f--eevyATElS~tMr~rL~k----k~y---nVl~~~ew~~t------~~k~dli~clN  177 (288)
T KOG3987|consen  113 PVTLLDLGAGDGEITLRMAPTF--EEVYATELSWTMRDRLKK----KNY---NVLTEIEWLQT------DVKLDLILCLN  177 (288)
T ss_pred             CeeEEeccCCCcchhhhhcchH--HHHHHHHhhHHHHHHHhh----cCC---ceeeehhhhhc------CceeehHHHHH
Confidence            5799999999999987777443  369999999987665543    222   222 1122221      14699999865


Q ss_pred             cc----cHHHHHHHHccCccc-CeEEEEEe--------------------------CCCcHHHHHHHHHHHHHhCCeeeE
Q 026122          155 VA----EMRILAEYCLPLVRV-GGLFVAAK--------------------------GHDPQEEVKNSERAVQLMGASLLQ  203 (243)
Q Consensus       155 ~~----~~~~~l~~~~~~Lkp-gG~l~~~~--------------------------~~~~~~~~~~~~~~l~~~g~~~~~  203 (243)
                      +.    +.-.+++.++.+|+| +|++++..                          |....+++..+.+.++++|+.++.
T Consensus       178 lLDRc~~p~kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~~rPdn~Le~~Gr~~ee~v~~~~e~lr~~g~~vea  257 (288)
T KOG3987|consen  178 LLDRCFDPFKLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLPLRPDNLLENNGRSFEEEVARFMELLRNCGYRVEA  257 (288)
T ss_pred             HHHhhcChHHHHHHHHHHhccCCCcEEEEEEecccceeecCCCCCcCCchHHHHhcCccHHHHHHHHHHHHHhcCchhhh
Confidence            33    467889999999999 88876421                          123355667788889999998877


Q ss_pred             EEEEecC
Q 026122          204 LCSVESQ  210 (243)
Q Consensus       204 ~~~~~~~  210 (243)
                      -.+..+.
T Consensus       258 wTrlPYL  264 (288)
T KOG3987|consen  258 WTRLPYL  264 (288)
T ss_pred             hhcCCee
Confidence            6554443

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=97.89  E-value=3.6e-05  Score=65.38  Aligned_cols=90  Identities=21%  Similarity=0.110  Sum_probs=69.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCE-EEEEccccccccCCcCCCCceEEEEcC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNV-QIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      +..++|+|||.|-..   . ..|.+.++|.|++...+.-+++.       +. ....+|+..++...   .+||.+++.+
T Consensus        46 gsv~~d~gCGngky~---~-~~p~~~~ig~D~c~~l~~~ak~~-------~~~~~~~ad~l~~p~~~---~s~d~~lsia  111 (293)
T KOG1331|consen   46 GSVGLDVGCGNGKYL---G-VNPLCLIIGCDLCTGLLGGAKRS-------GGDNVCRADALKLPFRE---ESFDAALSIA  111 (293)
T ss_pred             cceeeecccCCcccC---c-CCCcceeeecchhhhhccccccC-------CCceeehhhhhcCCCCC---Cccccchhhh
Confidence            789999999999763   2 23778999999998765554431       23 67788988887653   7899999865


Q ss_pred             cc-------cHHHHHHHHccCcccCeEEEEEe
Q 026122          155 VA-------EMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       155 ~~-------~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      +.       ....+++++.+.|+|||...++.
T Consensus       112 vihhlsT~~RR~~~l~e~~r~lrpgg~~lvyv  143 (293)
T KOG1331|consen  112 VIHHLSTRERRERALEELLRVLRPGGNALVYV  143 (293)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHhcCCCceEEEE
Confidence            32       46889999999999999976654

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=97.82  E-value=0.00013  Score=61.73  Aligned_cols=127  Identities=12%  Similarity=0.246  Sum_probs=93.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~-  154 (243)
                      ++.|+=+| ---..++++|...-..+|.-||+++..+.+.++.++..|.+|++.+.-|+...-+. .+..+||+.+... 
T Consensus       153 gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe-~~~~kFDvfiTDPp  230 (354)
T COG1568         153 GKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPE-DLKRKFDVFITDPP  230 (354)
T ss_pred             CCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChH-HHHhhCCeeecCch
Confidence            77899999 44455666665544468999999999999999999999999999999998874332 2346899999864 


Q ss_pred             --cccHHHHHHHHccCcccC---eEEEEEeCCCcHHHHHHHHH-HHHHhCCeeeEE
Q 026122          155 --VAEMRILAEYCLPLVRVG---GLFVAAKGHDPQEEVKNSER-AVQLMGASLLQL  204 (243)
Q Consensus       155 --~~~~~~~l~~~~~~Lkpg---G~l~~~~~~~~~~~~~~~~~-~l~~~g~~~~~~  204 (243)
                        +..+..++..-...||--   |++.+.........-.++++ +++..|+-+.++
T Consensus       231 eTi~alk~FlgRGI~tLkg~~~aGyfgiT~ressidkW~eiQr~lIn~~gvVITdi  286 (354)
T COG1568         231 ETIKALKLFLGRGIATLKGEGCAGYFGITRRESSIDKWREIQRILINEMGVVITDI  286 (354)
T ss_pred             hhHHHHHHHHhccHHHhcCCCccceEeeeeccccHHHHHHHHHHHHHhcCeeeHhh
Confidence              334566666656666654   78888776655566666666 677888766554

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=97.79  E-value=2.6e-05  Score=71.06  Aligned_cols=95  Identities=17%  Similarity=0.118  Sum_probs=55.4

Q ss_pred             CeEEEEcCCCChHHHHHHHHCCCCEEEEEe---CCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122           77 LKLVDVGTGAGLPGLVLAIACPDWKVTLLE---SMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        77 ~~VLDiGcG~G~~~~~la~~~~~~~v~~vD---~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      .++||+|||+|.++..+..+  +..+..+-   ..+..+++|.    +-|+.- -+-..-...++...   +.||+|.|.
T Consensus       119 R~~LDvGcG~aSF~a~l~~r--~V~t~s~a~~d~~~~qvqfal----eRGvpa-~~~~~~s~rLPfp~---~~fDmvHcs  188 (506)
T PF03141_consen  119 RTALDVGCGVASFGAYLLER--NVTTMSFAPNDEHEAQVQFAL----ERGVPA-MIGVLGSQRLPFPS---NAFDMVHCS  188 (506)
T ss_pred             EEEEeccceeehhHHHHhhC--CceEEEcccccCCchhhhhhh----hcCcch-hhhhhccccccCCc---cchhhhhcc
Confidence            46899999999998777644  33333333   3333333332    234431 11111223455543   789999984


Q ss_pred             C-cc----cHHHHHHHHccCcccCeEEEEEeCC
Q 026122          154 A-VA----EMRILAEYCLPLVRVGGLFVAAKGH  181 (243)
Q Consensus       154 ~-~~----~~~~~l~~~~~~LkpgG~l~~~~~~  181 (243)
                      . ..    .-.-++-++-|+|+|||+++....+
T Consensus       189 rc~i~W~~~~g~~l~evdRvLRpGGyfv~S~pp  221 (506)
T PF03141_consen  189 RCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPP  221 (506)
T ss_pred             cccccchhcccceeehhhhhhccCceEEecCCc
Confidence            2 11    1234666789999999998876643

; GO: 0008168 methyltransferase activity

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=97.69  E-value=0.0002  Score=62.66  Aligned_cols=93  Identities=16%  Similarity=0.076  Sum_probs=70.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~-  154 (243)
                      -...+|+|.|.|..+-.+...+|.  |-+++.+...+..++....    ..|+.+-+|..+-.      .+-|+|++.- 
T Consensus       178 v~~avDvGgGiG~v~k~ll~~fp~--ik~infdlp~v~~~a~~~~----~gV~~v~gdmfq~~------P~~daI~mkWi  245 (342)
T KOG3178|consen  178 VNVAVDVGGGIGRVLKNLLSKYPH--IKGINFDLPFVLAAAPYLA----PGVEHVAGDMFQDT------PKGDAIWMKWI  245 (342)
T ss_pred             CceEEEcCCcHhHHHHHHHHhCCC--CceeecCHHHHHhhhhhhc----CCcceecccccccC------CCcCeEEEEee
Confidence            468999999999998777777774  7788888776655554443    33778888876642      3467999842 


Q ss_pred             -----cccHHHHHHHHccCcccCeEEEEEeC
Q 026122          155 -----VAEMRILAEYCLPLVRVGGLFVAAKG  180 (243)
Q Consensus       155 -----~~~~~~~l~~~~~~LkpgG~l~~~~~  180 (243)
                           ..+..++++.|+..|+|||.+++.+.
T Consensus       246 LhdwtDedcvkiLknC~~sL~~~GkIiv~E~  276 (342)
T KOG3178|consen  246 LHDWTDEDCVKILKNCKKSLPPGGKIIVVEN  276 (342)
T ss_pred             cccCChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence                 23689999999999999999998764

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=97.66  E-value=0.00088  Score=59.00  Aligned_cols=128  Identities=19%  Similarity=0.152  Sum_probs=85.8

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHHHC-C---CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC------
Q 026122           72 SCNSNLKLVDVGTGAGLPGLVLAIAC-P---DWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV------  141 (243)
Q Consensus        72 ~~~~~~~VLDiGcG~G~~~~~la~~~-~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~------  141 (243)
                      .++++.+|||+++-+|.-++.+.+.. .   ...|++=|.+...+.+......+..-.++.+.+.|+..++...      
T Consensus       152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~  231 (375)
T KOG2198|consen  152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGND  231 (375)
T ss_pred             ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCch
Confidence            35689999999999999876665442 1   2489999999999988888876666556666666666554321      


Q ss_pred             cCCCCceEEEEcC--------------------------cc-cHHHHHHHHccCcccCeEEEEEeCC-CcHHHHHHHHHH
Q 026122          142 SFREQYDVAVARA--------------------------VA-EMRILAEYCLPLVRVGGLFVAAKGH-DPQEEVKNSERA  193 (243)
Q Consensus       142 ~~~~~fD~I~~~~--------------------------~~-~~~~~l~~~~~~LkpgG~l~~~~~~-~~~~~~~~~~~~  193 (243)
                      .....||-|++..                          .. -.-.++....++||+||+++..... +..+.-.-..++
T Consensus       232 ~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieNEaVV~~~  311 (375)
T KOG2198|consen  232 KEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIENEAVVQEA  311 (375)
T ss_pred             hhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhhHHHHHHH
Confidence            0114699999841                          00 1356778888999999999987743 222222223455


Q ss_pred             HHHhCC
Q 026122          194 VQLMGA  199 (243)
Q Consensus       194 l~~~g~  199 (243)
                      +++.|-
T Consensus       312 L~~~~~  317 (375)
T KOG2198|consen  312 LQKVGG  317 (375)
T ss_pred             HHHhcC
Confidence            556553

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=97.54  E-value=0.0004  Score=58.29  Aligned_cols=77  Identities=13%  Similarity=0.057  Sum_probs=54.9

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEE
Q 026122           72 SCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        72 ~~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      .++...+|+|||||-=-+++......++..++|+|++..++++.......++.. .++...|+..-...    ...|+.+
T Consensus       102 ~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~-~~~~v~Dl~~~~~~----~~~DlaL  176 (251)
T PF07091_consen  102 RIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVP-HDARVRDLLSDPPK----EPADLAL  176 (251)
T ss_dssp             CS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-C-EEEEEE-TTTSHTT----SEESEEE
T ss_pred             cCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCC-cceeEeeeeccCCC----CCcchhh
Confidence            345578999999998877665555556789999999999999999999999874 66666677654332    5689998


Q ss_pred             Ec
Q 026122          152 AR  153 (243)
Q Consensus       152 ~~  153 (243)
                      .-
T Consensus       177 ll  178 (251)
T PF07091_consen  177 LL  178 (251)
T ss_dssp             EE
T ss_pred             HH
Confidence            74

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=97.53  E-value=0.00022  Score=63.97  Aligned_cols=72  Identities=21%  Similarity=0.273  Sum_probs=58.4

Q ss_pred             eEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEEE
Q 026122           78 KLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        78 ~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      .|||||+|||.+++..++.. +-.|+++|.-..|.+.|++...++|.. +|++++.+..+....+.  ...|+++.
T Consensus        69 ~vLdigtGTGLLSmMAvrag-aD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~--~RadI~v~  141 (636)
T KOG1501|consen   69 FVLDIGTGTGLLSMMAVRAG-ADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGS--SRADIAVR  141 (636)
T ss_pred             EEEEccCCccHHHHHHHHhc-CCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCc--chhhhhhH
Confidence            68999999999997777664 558999999999999999999999986 59999988887654321  23666655

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.47  E-value=0.00032  Score=61.34  Aligned_cols=123  Identities=15%  Similarity=0.148  Sum_probs=73.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCC-EEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDW-KVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      ..+|||+|.|+|.-..++-..+|+. .++.++.|+..-+......+........+..+|+..-.......+.|++++...
T Consensus       114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~~  193 (484)
T COG5459         114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVLD  193 (484)
T ss_pred             cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhhh
Confidence            5679999999998866666667874 688899998654444444333332222233333322111101125688887642


Q ss_pred             -------cccHHHHHHHHccCcccCeEEEEEeCCC--cHHHHHHHHHHHHHhC
Q 026122          155 -------VAEMRILAEYCLPLVRVGGLFVAAKGHD--PQEEVKNSERAVQLMG  198 (243)
Q Consensus       155 -------~~~~~~~l~~~~~~LkpgG~l~~~~~~~--~~~~~~~~~~~l~~~g  198 (243)
                             --++...++.++.++.|||.+++++...  .-+.+....+.+-+.|
T Consensus       194 eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~Gf~~I~rAR~~ll~~~  246 (484)
T COG5459         194 ELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPAGFERILRARQILLAPG  246 (484)
T ss_pred             hhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCchhHHHHHHHHHHHhcCC
Confidence                   1245668899999999999999988432  2334455554443333

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=97.44  E-value=0.00017  Score=62.64  Aligned_cols=77  Identities=10%  Similarity=0.000  Sum_probs=54.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCc---CCCCceEEE
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS---FREQYDVAV  151 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~---~~~~fD~I~  151 (243)
                      ++..++|.=-|.|..+..+....+.++|+|+|.++.+++.+++..+.. -.++.+++++..++.....   ...++|.|+
T Consensus        20 ~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~-~~r~~~~~~~F~~l~~~l~~~~~~~~~dgiL   98 (310)
T PF01795_consen   20 PGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF-DDRFIFIHGNFSNLDEYLKELNGINKVDGIL   98 (310)
T ss_dssp             TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC-CTTEEEEES-GGGHHHHHHHTTTTS-EEEEE
T ss_pred             CCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc-cceEEEEeccHHHHHHHHHHccCCCccCEEE
Confidence            478999999999999988888888899999999999998887765544 2359999999887643211   125799998


Q ss_pred             E
Q 026122          152 A  152 (243)
Q Consensus       152 ~  152 (243)
                      .
T Consensus        99 ~   99 (310)
T PF01795_consen   99 F   99 (310)
T ss_dssp             E
T ss_pred             E
Confidence            8

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=97.42  E-value=0.0039  Score=50.37  Aligned_cols=147  Identities=15%  Similarity=0.133  Sum_probs=90.9

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCCHHHH----H--HHHHHHHHcCCCCEEEEEccccccccCCcCCC
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRC----V--FLEHAVSLTQLLNVQIVRGRAETLGKDVSFRE  145 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~----~--~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  145 (243)
                      ++++.+|+|+=-|.|..+..++... |.+.|++.=..+...    +  ..+...+.-...|++.+-.+...+...    +
T Consensus        46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~p----q  121 (238)
T COG4798          46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAP----Q  121 (238)
T ss_pred             cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCC----C
Confidence            4679999999999999998888654 567888887654311    1  111122222334666666666655422    5


Q ss_pred             CceEEEEcC-----------cccHHHHHHHHccCcccCeEEEEEeC-----CCcHHH-------HHHHHHHHHHhCCeee
Q 026122          146 QYDVAVARA-----------VAEMRILAEYCLPLVRVGGLFVAAKG-----HDPQEE-------VKNSERAVQLMGASLL  202 (243)
Q Consensus       146 ~fD~I~~~~-----------~~~~~~~l~~~~~~LkpgG~l~~~~~-----~~~~~~-------~~~~~~~l~~~g~~~~  202 (243)
                      ..|+++.+.           ......+...+++.|||||.+.++.-     ......       ........++.||.+.
T Consensus       122 ~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~veaaGFkl~  201 (238)
T COG4798         122 KLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPAVVIAEVEAAGFKLE  201 (238)
T ss_pred             cccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChHHHHHHHHhhcceee
Confidence            567766532           22468888899999999999888762     111111       1234556678999888


Q ss_pred             EEEEEecCCCCCceEEEEEEee
Q 026122          203 QLCSVESQSPFGQRTAVVCLKS  224 (243)
Q Consensus       203 ~~~~~~~~~~~~~r~~v~~~k~  224 (243)
                      ....+.....+ .+.+-++...
T Consensus       202 aeS~ilaNp~D-~~~i~v~dp~  222 (238)
T COG4798         202 AESEILANPDD-PRGIWVFDPT  222 (238)
T ss_pred             eeehhhcCCCC-CCceeecCcc
Confidence            77665544333 3444444433

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=97.40  E-value=0.0043  Score=52.29  Aligned_cols=102  Identities=17%  Similarity=0.121  Sum_probs=63.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC-----CC-CEEEEEccccccccCCcCCCC-ce
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ-----LL-NVQIVRGRAETLGKDVSFREQ-YD  148 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-----~~-~v~~~~~d~~~~~~~~~~~~~-fD  148 (243)
                      ..+||++|+|+|..++..|.. ..++|+..|...- ++..+.+...++     .. ++.+..-++.+.......... +|
T Consensus        87 ~~~vlELGsGtglvG~~aa~~-~~~~v~ltD~~~~-~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D  164 (248)
T KOG2793|consen   87 YINVLELGSGTGLVGILAALL-LGAEVVLTDLPKV-VENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD  164 (248)
T ss_pred             ceeEEEecCCccHHHHHHHHH-hcceeccCCchhh-HHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence            457999999999999888865 4689999998653 333444433222     11 244443343332211111234 89


Q ss_pred             EEEEcC----cccHHHHHHHHccCcccCeEEEEEe
Q 026122          149 VAVARA----VAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       149 ~I~~~~----~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      +|++..    ....+.++..+...|..+|.+++..
T Consensus       165 lilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~  199 (248)
T KOG2793|consen  165 LILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAY  199 (248)
T ss_pred             EEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEE
Confidence            999864    3356777888888888888655544

>PHA01634 hypothetical protein

Probab=97.40  E-value=0.0011  Score=49.92  Aligned_cols=72  Identities=17%  Similarity=0.170  Sum_probs=53.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      +.+|+|||++.|..++.++.. ++.+|+++|.++...+..+++++.+.+-+=-+...++..   .   -+.||+..+..
T Consensus        29 ~KtV~dIGA~iGdSaiYF~l~-GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~eW~~---~---Y~~~Di~~iDC  100 (156)
T PHA01634         29 QRTIQIVGADCGSSALYFLLR-GASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKGEWNG---E---YEDVDIFVMDC  100 (156)
T ss_pred             CCEEEEecCCccchhhHHhhc-CccEEEEeccCHHHHHHHHHHhhhheeeeceeecccccc---c---CCCcceEEEEc
Confidence            789999999999999999966 567999999999999999998887654221122222222   1   26799888754

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=97.38  E-value=0.001  Score=58.51  Aligned_cols=95  Identities=17%  Similarity=0.171  Sum_probs=65.5

Q ss_pred             CCCCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcc-ccccccCCcCCCCceE
Q 026122           72 SCNSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGR-AETLGKDVSFREQYDV  149 (243)
Q Consensus        72 ~~~~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d-~~~~~~~~~~~~~fD~  149 (243)
                      .++++.+|+=+|+| -|..++.+|+... ++|+++|.+++..+.|++.    |-+  .++... .......   .+.||+
T Consensus       163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~l----GAd--~~i~~~~~~~~~~~---~~~~d~  232 (339)
T COG1064         163 NVKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKL----GAD--HVINSSDSDALEAV---KEIADA  232 (339)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHh----CCc--EEEEcCCchhhHHh---HhhCcE
Confidence            46779999999998 3346778887654 8999999999977777654    432  344433 2222111   134999


Q ss_pred             EEEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122          150 AVARAVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       150 I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      |+....   ...++...+.|++||++++.-
T Consensus       233 ii~tv~---~~~~~~~l~~l~~~G~~v~vG  259 (339)
T COG1064         233 IIDTVG---PATLEPSLKALRRGGTLVLVG  259 (339)
T ss_pred             EEECCC---hhhHHHHHHHHhcCCEEEEEC
Confidence            998654   556677778999999988654

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=97.38  E-value=0.00074  Score=55.90  Aligned_cols=130  Identities=15%  Similarity=0.121  Sum_probs=81.7

Q ss_pred             hHHHHHH--HHHHHHHHHHHhccCC-ccccCChHHHHHHhHhhhcccCCCcccccCccCCCCCCCCCeEEEEcCCCChHH
Q 026122           14 FMFMFFY--LGLFLKKRKQNLQKMN-LTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPG   90 (243)
Q Consensus        14 ~~~~~~~--l~~~~~~~~~~n~~~n-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~VLDiGcG~G~~~   90 (243)
                      +.+++++  |.+||. +..|..--+ ++.+..-+..|.+|+.|-+.-..--          ...+..++||||.|.-++=
T Consensus        25 AVk~LnKAlL~~fY~-v~~wdiPeg~LCPpvPgRAdYih~laDLL~s~~g~----------~~~~~i~~LDIGvGAnCIY   93 (292)
T COG3129          25 AVKALNKALLAHFYA-VRYWDIPEGFLCPPVPGRADYIHHLADLLASTSGQ----------IPGKNIRILDIGVGANCIY   93 (292)
T ss_pred             HHHHHHHHHHHHhcc-eeEecCCCCCcCCCCCChhHHHHHHHHHHHhcCCC----------CCcCceEEEeeccCccccc
Confidence            4456666  455554 344554333 4666666677888888866443211          1134678999999987652


Q ss_pred             HHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc-CCCC-EEEEEccccccccCC--cCCCCceEEEEcC
Q 026122           91 LVLAIACPDWKVTLLESMNKRCVFLEHAVSLT-QLLN-VQIVRGRAETLGKDV--SFREQYDVAVARA  154 (243)
Q Consensus        91 ~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~~~-v~~~~~d~~~~~~~~--~~~~~fD~I~~~~  154 (243)
                      =.+...--+++.+|.|+++..++.|+.++..+ ++.+ ++++...-.+..+..  ...+.||+.+||.
T Consensus        94 PliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~tlCNP  161 (292)
T COG3129          94 PLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDATLCNP  161 (292)
T ss_pred             ccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeeeEecCC
Confidence            12222223689999999999999999999988 6654 776654333222211  1136799999973

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=97.37  E-value=0.002  Score=62.16  Aligned_cols=135  Identities=17%  Similarity=0.125  Sum_probs=87.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC-------C-----CCEEEEEeCCH---HHHH-----------HHHHHHHH-----cCC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC-------P-----DWKVTLLESMN---KRCV-----------FLEHAVSL-----TQL  124 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~-------~-----~~~v~~vD~s~---~~~~-----------~a~~~~~~-----~~~  124 (243)
                      .-+|+|+|-|+|.+.+...+..       |     ..+++++|..+   +.+.           .+++..+.     .|+
T Consensus        58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~  137 (662)
T PRK01747         58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC  137 (662)
T ss_pred             cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence            3589999999999876655433       2     35899999644   2221           12222211     122


Q ss_pred             -------C--CEEEEEccccccccCCcCCCCceEEEEcCccc-------HHHHHHHHccCcccCeEEEEEeCCCcHHHHH
Q 026122          125 -------L--NVQIVRGRAETLGKDVSFREQYDVAVARAVAE-------MRILAEYCLPLVRVGGLFVAAKGHDPQEEVK  188 (243)
Q Consensus       125 -------~--~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~~-------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~  188 (243)
                             .  .+++..+|+.+.....  ...+|+++..++++       -+++++.+.++++|||.+.-...      ..
T Consensus       138 ~~~~~~~~~~~l~l~~gd~~~~~~~~--~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t~------a~  209 (662)
T PRK01747        138 HRLLFDDGRVTLDLWFGDANELLPQL--DARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFTS------AG  209 (662)
T ss_pred             eEEEecCCcEEEEEEecCHHHHHHhc--cccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEeeh------HH
Confidence                   1  2567788887754321  25699999986442       28899999999999999876543      24


Q ss_pred             HHHHHHHHhCCeeeEEEEEecCCCCCceEEEEEEe
Q 026122          189 NSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLK  223 (243)
Q Consensus       189 ~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~v~~~k  223 (243)
                      .++..|..+||.+...     +.....|.+.....
T Consensus       210 ~vr~~l~~~GF~v~~~-----~~~g~kr~~~~~~~  239 (662)
T PRK01747        210 FVRRGLQEAGFTVRKV-----KGFGRKREMLVGEL  239 (662)
T ss_pred             HHHHHHHHcCCeeeec-----CCCchhhhhhhehh
Confidence            4577888999987644     34445565555543

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=97.33  E-value=0.0044  Score=53.29  Aligned_cols=135  Identities=13%  Similarity=0.094  Sum_probs=81.9

Q ss_pred             eEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC---
Q 026122           78 KLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA---  154 (243)
Q Consensus        78 ~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~---  154 (243)
                      +|+|+.||.|.++..+... +-..|.++|+++.+++..+.|...      .++++|+.++.... ....+|+++...   
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~-G~~~v~a~e~~~~a~~~~~~N~~~------~~~~~Di~~~~~~~-~~~~~D~l~~gpPCq   73 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKA-GFEIVAANEIDKSAAETYEANFPN------KLIEGDITKIDEKD-FIPDIDLLTGGFPCQ   73 (275)
T ss_pred             cEEEEccCcchHHHHHHHc-CCEEEEEEeCCHHHHHHHHHhCCC------CCccCccccCchhh-cCCCCCEEEeCCCCh
Confidence            6899999999987666654 234678999999988877776531      26677888775431 125699999841   


Q ss_pred             ----------cc-c----HHHHHHHHccCcccCeEEEEEeCC------CcHHHHHHHHHHHHHhCCeeeEEEEEec--CC
Q 026122          155 ----------VA-E----MRILAEYCLPLVRVGGLFVAAKGH------DPQEEVKNSERAVQLMGASLLQLCSVES--QS  211 (243)
Q Consensus       155 ----------~~-~----~~~~l~~~~~~LkpgG~l~~~~~~------~~~~~~~~~~~~l~~~g~~~~~~~~~~~--~~  211 (243)
                                .. .    +..+++ +.+.++|.  ++++++.      ........+.+.++..|+.+... -+..  -+
T Consensus        74 ~fS~ag~~~~~~d~r~~L~~~~~~-~i~~~~P~--~~v~ENV~g~~~~~~~~~~~~i~~~l~~~GY~~~~~-~l~a~~~G  149 (275)
T cd00315          74 PFSIAGKRKGFEDTRGTLFFEIIR-ILKEKKPK--YFLLENVKGLLTHDNGNTLKVILNTLEELGYNVYWK-LLNASDYG  149 (275)
T ss_pred             hhhHHhhcCCCCCchHHHHHHHHH-HHHhcCCC--EEEEEcCcchhccCchHHHHHHHHHHHhCCcEEEEE-EEEHHHcC
Confidence                      11 1    223333 22344664  4444432      12455777888899999976432 2232  12


Q ss_pred             C--CCceEEEEEEee
Q 026122          212 P--FGQRTAVVCLKS  224 (243)
Q Consensus       212 ~--~~~r~~v~~~k~  224 (243)
                      .  ...|.+++..+.
T Consensus       150 vPQ~R~R~~~ia~~~  164 (275)
T cd00315         150 VPQNRERVFIIGIRK  164 (275)
T ss_pred             CCCCCcEEEEEEEeC
Confidence            2  235666665554

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=97.29  E-value=0.0073  Score=51.42  Aligned_cols=123  Identities=12%  Similarity=0.075  Sum_probs=70.7

Q ss_pred             CeEEEEcCCCC--hHHHHHHH-HCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC---cCCCCce--
Q 026122           77 LKLVDVGTGAG--LPGLVLAI-ACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV---SFREQYD--  148 (243)
Q Consensus        77 ~~VLDiGcG~G--~~~~~la~-~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~---~~~~~fD--  148 (243)
                      ...||||||-=  .+.-..|+ ..|+++|+-||.++-.+.+++.......-....++++|+.+.....   ...+-+|  
T Consensus        70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~  149 (267)
T PF04672_consen   70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDFD  149 (267)
T ss_dssp             -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--TT
T ss_pred             ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCCC
Confidence            47999999932  23334444 3689999999999999998888776554223889999988743210   0011222  


Q ss_pred             ---EEEEcC-------cccHHHHHHHHccCcccCeEEEEEeCC--CcHHHHHHHHHHHHHhCC
Q 026122          149 ---VAVARA-------VAEMRILAEYCLPLVRVGGLFVAAKGH--DPQEEVKNSERAVQLMGA  199 (243)
Q Consensus       149 ---~I~~~~-------~~~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~~~~~l~~~g~  199 (243)
                         .+++.+       ..+...++......|.||.+|++.+..  ...+....+...++..+-
T Consensus       150 rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~~~~~~~~~~~~~~  212 (267)
T PF04672_consen  150 RPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPERAEALEAVYAQAGS  212 (267)
T ss_dssp             S--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHHHHHHHHHHHCCS
T ss_pred             CCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHHHHHHHHHHHcCCC
Confidence               333333       236899999999999999999998732  233444555555555543

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=97.27  E-value=0.0044  Score=53.36  Aligned_cols=78  Identities=14%  Similarity=0.095  Sum_probs=61.1

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC--cCCCCceEE
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPD-WKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV--SFREQYDVA  150 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~--~~~~~fD~I  150 (243)
                      +++...+|.=-|.|..+..+...++. ++++|+|.++.+++.|++....++ .++.+++++..++....  ....++|-|
T Consensus        22 ~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~-~r~~~v~~~F~~l~~~l~~~~i~~vDGi  100 (314)
T COG0275          22 KPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD-GRVTLVHGNFANLAEALKELGIGKVDGI  100 (314)
T ss_pred             CCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC-CcEEEEeCcHHHHHHHHHhcCCCceeEE
Confidence            34789999999999998888877764 579999999999999999888766 46999999877754321  001467888


Q ss_pred             EE
Q 026122          151 VA  152 (243)
Q Consensus       151 ~~  152 (243)
                      +.
T Consensus       101 L~  102 (314)
T COG0275         101 LL  102 (314)
T ss_pred             EE
Confidence            76

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=97.25  E-value=0.00089  Score=54.80  Aligned_cols=102  Identities=12%  Similarity=0.089  Sum_probs=57.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHH---C-CCCEEEEEeCCHHHHHHHHHHHHHcCC-CCEEEEEccccccccCCc---C--CC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIA---C-PDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVS---F--RE  145 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~---~-~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~---~--~~  145 (243)
                      ++.|+++|.-.|.-++..|..   . +.++|+|||++-..  ..+...+.+.+ ++|++++||..+......   .  ..
T Consensus        33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~--~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~  110 (206)
T PF04989_consen   33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRP--HNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPP  110 (206)
T ss_dssp             -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT----S-GGGG----TTEEEEES-SSSTHHHHTSGSS----
T ss_pred             CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcch--hchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccC
Confidence            789999999999988777753   2 67899999996431  12333333344 469999999876432110   1  13


Q ss_pred             CceEEEEcCc---ccHHHHHHHHccCcccCeEEEEEe
Q 026122          146 QYDVAVARAV---AEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       146 ~fD~I~~~~~---~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      ...+|+-.+.   ......++....++++|+++++..
T Consensus       111 ~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeD  147 (206)
T PF04989_consen  111 HPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVED  147 (206)
T ss_dssp             SSEEEEESS----SSHHHHHHHHHHT--TT-EEEETS
T ss_pred             CceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEe
Confidence            4557776654   567777788899999999988753

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=97.13  E-value=0.0045  Score=56.72  Aligned_cols=155  Identities=15%  Similarity=0.218  Sum_probs=84.8

Q ss_pred             hHHHHHHhHhhhcccCC-CcccccCccCCCCCCCCCeEEEEcCCCChHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHH
Q 026122           43 VNEVMERHIDDSLAIIP-PIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLVLAIACPDW--KVTLLESMNKRCVFLEHAV  119 (243)
Q Consensus        43 ~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~~--~v~~vD~s~~~~~~a~~~~  119 (243)
                      -.+.|++.+-.+..+.. .+..          ..-..|+|..+|.|.++.+|.. .|-+  .|+-++-. .    .-..+
T Consensus       342 Dt~~Wk~~V~~Y~~l~~~~i~~----------~~iRNVMDMnAg~GGFAAAL~~-~~VWVMNVVP~~~~-n----tL~vI  405 (506)
T PF03141_consen  342 DTKHWKKRVSHYKKLLGLAIKW----------GRIRNVMDMNAGYGGFAAALID-DPVWVMNVVPVSGP-N----TLPVI  405 (506)
T ss_pred             HHHHHHHHHHHHHHhhcccccc----------cceeeeeeecccccHHHHHhcc-CCceEEEecccCCC-C----cchhh
Confidence            34577777665553333 2211          1134799999999988766653 2322  23333211 1    11112


Q ss_pred             HHcCCCCEEEEEccccccccCCcCCCCceEEEEcCc-------ccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHH
Q 026122          120 SLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV-------AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSER  192 (243)
Q Consensus       120 ~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~-------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~  192 (243)
                      -..|+  |-+.+.=.+.++.   ++.+||+|.++.+       .+++.++-++-|.|+|||.+++-..   ..-+.++..
T Consensus       406 ydRGL--IG~yhDWCE~fsT---YPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~---~~vl~~v~~  477 (506)
T PF03141_consen  406 YDRGL--IGVYHDWCEAFST---YPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDT---VDVLEKVKK  477 (506)
T ss_pred             hhccc--chhccchhhccCC---CCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEecc---HHHHHHHHH
Confidence            22233  2233322333433   3488999999752       2578889999999999999999544   445555555


Q ss_pred             HHHHhCCeeeEEEEEecCCCCCceEEEEEEe
Q 026122          193 AVQLMGASLLQLCSVESQSPFGQRTAVVCLK  223 (243)
Q Consensus       193 ~l~~~g~~~~~~~~~~~~~~~~~r~~v~~~k  223 (243)
                      .++...++.....  ...+......+.+++|
T Consensus       478 i~~~lrW~~~~~d--~e~g~~~~EkiL~~~K  506 (506)
T PF03141_consen  478 IAKSLRWEVRIHD--TEDGPDGPEKILICQK  506 (506)
T ss_pred             HHHhCcceEEEEe--cCCCCCCCceEEEEEC
Confidence            5556666554322  1223333444545443

; GO: 0008168 methyltransferase activity

>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.09  E-value=0.00037  Score=63.38  Aligned_cols=106  Identities=18%  Similarity=0.217  Sum_probs=88.8

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccccccCC-cCCCCceEE
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPD-WKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDV-SFREQYDVA  150 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~-~~~~~fD~I  150 (243)
                      .++-+|||.=|+||.-++..|...++ .+|++-|.++.+++..++|++.++..+ ++....|+.-+-... .....||+|
T Consensus       108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI  187 (525)
T KOG1253|consen  108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI  187 (525)
T ss_pred             cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceE
Confidence            34678999999999999999998877 489999999999999999999998765 788888876643221 112579999


Q ss_pred             EEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122          151 VARAVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       151 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      =.........+++.+.+.++.||.|++..
T Consensus       188 DLDPyGs~s~FLDsAvqav~~gGLL~vT~  216 (525)
T KOG1253|consen  188 DLDPYGSPSPFLDSAVQAVRDGGLLCVTC  216 (525)
T ss_pred             ecCCCCCccHHHHHHHHHhhcCCEEEEEe
Confidence            99888888999999999999999998754

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.09  E-value=0.0024  Score=49.31  Aligned_cols=98  Identities=18%  Similarity=0.055  Sum_probs=71.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEEE-c
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVA-R  153 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~~-~  153 (243)
                      ..+.+|+|+|.|.+-+..++.. ...-+|+|+++-.+.+++-.+-+.|+. ...|...|+......     .|..++. .
T Consensus        73 ~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~-----dy~~vviFg  146 (199)
T KOG4058|consen   73 KGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLR-----DYRNVVIFG  146 (199)
T ss_pred             CCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcccc-----ccceEEEee
Confidence            5789999999999977777553 467899999999999999998888885 488999998887653     3444443 3


Q ss_pred             CcccHHHHHHHHccCcccCeEEEEEe
Q 026122          154 AVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       154 ~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      +-.-+..+-.++..-+..+.+++...
T Consensus       147 aes~m~dLe~KL~~E~p~nt~vvacR  172 (199)
T KOG4058|consen  147 AESVMPDLEDKLRTELPANTRVVACR  172 (199)
T ss_pred             hHHHHhhhHHHHHhhCcCCCeEEEEe
Confidence            33334455556666777787776544

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=97.04  E-value=0.015  Score=54.20  Aligned_cols=104  Identities=14%  Similarity=0.079  Sum_probs=75.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCC----CCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCC--cCCCCce
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACP----DWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDV--SFREQYD  148 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~----~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~--~~~~~fD  148 (243)
                      ..+|.|-.||+|.+.+..+....    ...++|.|+++.....++-+.--+|+. ++....+|-..-+...  .....||
T Consensus       187 ~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~~~~D  266 (489)
T COG0286         187 RNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDDKDDKGKFD  266 (489)
T ss_pred             CCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCcccccCCcccee
Confidence            66999999999988655554432    377999999999999999999888886 3566666654433221  1125799


Q ss_pred             EEEEcC----------c-------------------ccHHHHHHHHccCcccCeEEEEEe
Q 026122          149 VAVARA----------V-------------------AEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       149 ~I~~~~----------~-------------------~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      +|++|.          .                   .....+++.+...|+|||+..++.
T Consensus       267 ~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl  326 (489)
T COG0286         267 FVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVL  326 (489)
T ss_pred             EEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEe
Confidence            999961          0                   013678899999999988766554

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=96.92  E-value=0.0058  Score=55.77  Aligned_cols=97  Identities=14%  Similarity=0.203  Sum_probs=70.1

Q ss_pred             eEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC---
Q 026122           78 KLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA---  154 (243)
Q Consensus        78 ~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~---  154 (243)
                      +++-+|||.-.+...+-.. +-..|+.+|+|+-.++.....-. ..-.-.++...|+..+...+   ++||+|+.-+   
T Consensus        51 ~~l~lGCGNS~l~e~ly~~-G~~dI~~iD~S~V~V~~m~~~~~-~~~~~~~~~~~d~~~l~fed---ESFdiVIdkGtlD  125 (482)
T KOG2352|consen   51 KILQLGCGNSELSEHLYKN-GFEDITNIDSSSVVVAAMQVRNA-KERPEMQMVEMDMDQLVFED---ESFDIVIDKGTLD  125 (482)
T ss_pred             eeEeecCCCCHHHHHHHhc-CCCCceeccccHHHHHHHHhccc-cCCcceEEEEecchhccCCC---cceeEEEecCccc
Confidence            8999999999776544432 34579999999987765543321 11123789999999887764   7899999843   


Q ss_pred             --------c---ccHHHHHHHHccCcccCeEEEEEe
Q 026122          155 --------V---AEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       155 --------~---~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                              .   ......+..+.+++++||+++.+.
T Consensus       126 al~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svt  161 (482)
T KOG2352|consen  126 ALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVT  161 (482)
T ss_pred             cccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEE
Confidence                    1   134667788999999999977555

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=96.87  E-value=0.038  Score=47.96  Aligned_cols=130  Identities=15%  Similarity=0.146  Sum_probs=76.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EE--------------------------
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQ--------------------------  128 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~--------------------------  128 (243)
                      ..+||-=|||.|.++..+|...+  ++-|=|.|--|+-...=.+.....+| +.                          
T Consensus       151 ki~iLvPGaGlGRLa~dla~~G~--~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~  228 (369)
T KOG2798|consen  151 KIRILVPGAGLGRLAYDLACLGF--KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDI  228 (369)
T ss_pred             CceEEecCCCchhHHHHHHHhcc--cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccc
Confidence            56899999999999999997754  44555887766543222221111111 11                          


Q ss_pred             -------------EEEccccccccCCcCCCCceEEEEc----CcccHHHHHHHHccCcccCeEEEEEeCC---------C
Q 026122          129 -------------IVRGRAETLGKDVSFREQYDVAVAR----AVAEMRILAEYCLPLVRVGGLFVAAKGH---------D  182 (243)
Q Consensus       129 -------------~~~~d~~~~~~~~~~~~~fD~I~~~----~~~~~~~~l~~~~~~LkpgG~l~~~~~~---------~  182 (243)
                                   ...||..+.-......+.||+|+..    ...+.-+.++.+...|||||..+ -.|+         .
T Consensus       229 ~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWi-NlGPLlYHF~d~~g  307 (369)
T KOG2798|consen  229 HPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWI-NLGPLLYHFEDTHG  307 (369)
T ss_pred             cccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCcEEE-eccceeeeccCCCC
Confidence                         1112332222211112468988864    24468889999999999999955 2111         1


Q ss_pred             ------cHHHHHHHHHHHHHhCCeeeEEEEEe
Q 026122          183 ------PQEEVKNSERAVQLMGASLLQLCSVE  208 (243)
Q Consensus       183 ------~~~~~~~~~~~l~~~g~~~~~~~~~~  208 (243)
                            ..-...++....+..||.+++.+.+.
T Consensus       308 ~~~~~siEls~edl~~v~~~~GF~~~ke~~Id  339 (369)
T KOG2798|consen  308 VENEMSIELSLEDLKRVASHRGFEVEKERGID  339 (369)
T ss_pred             CcccccccccHHHHHHHHHhcCcEEEEeeeee
Confidence                  11123455666678899988776544

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=96.68  E-value=0.0076  Score=54.14  Aligned_cols=103  Identities=14%  Similarity=0.051  Sum_probs=65.2

Q ss_pred             CCCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcc-ccc-cccCCcCCCCceE
Q 026122           73 CNSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGR-AET-LGKDVSFREQYDV  149 (243)
Q Consensus        73 ~~~~~~VLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d-~~~-~~~~~~~~~~fD~  149 (243)
                      +.++.+||.+|||+ |..++.+|+..+..+|+++|.+++..+.+++..   +...+.....+ ..+ +... .....+|+
T Consensus       182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---~~~vi~~~~~~~~~~~l~~~-~~~~~~D~  257 (386)
T cd08283         182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---GAETINFEEVDDVVEALREL-TGGRGPDV  257 (386)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---CcEEEcCCcchHHHHHHHHH-cCCCCCCE
Confidence            34588999999987 888888888875457999999998877776541   22111111111 111 1000 00136999


Q ss_pred             EEEcCcc-------------------cHHHHHHHHccCcccCeEEEEEe
Q 026122          150 AVARAVA-------------------EMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       150 I~~~~~~-------------------~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      |+-....                   +....++.+.+.++++|.++...
T Consensus       258 vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g  306 (386)
T cd08283         258 CIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG  306 (386)
T ss_pred             EEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence            9874311                   12456788889999999988764

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.64  E-value=0.0083  Score=49.72  Aligned_cols=97  Identities=21%  Similarity=0.297  Sum_probs=65.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC----C-C----CEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC----c
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC----P-D----WKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV----S  142 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~----~-~----~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~----~  142 (243)
                      -.+|+|+++-+|..+..+++..    + .    .+|++||+.+-           ..+..|.-+++|+....-..    .
T Consensus        42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M-----------aPI~GV~qlq~DIT~~stae~Ii~h  110 (294)
T KOG1099|consen   42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM-----------APIEGVIQLQGDITSASTAEAIIEH  110 (294)
T ss_pred             hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC-----------CccCceEEeecccCCHhHHHHHHHH
Confidence            4699999999999998888753    1 1    13999999762           23456788889987643110    0


Q ss_pred             C-CCCceEEEEcC------cccH---------HHHHHHHccCcccCeEEEE--EeCCCc
Q 026122          143 F-REQYDVAVARA------VAEM---------RILAEYCLPLVRVGGLFVA--AKGHDP  183 (243)
Q Consensus       143 ~-~~~fD~I~~~~------~~~~---------~~~l~~~~~~LkpgG~l~~--~~~~~~  183 (243)
                      + .++.|+|+|.+      +.++         ...+.....+|||||.|+.  ..|...
T Consensus       111 fggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~~t  169 (294)
T KOG1099|consen  111 FGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGRDT  169 (294)
T ss_pred             hCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccCch
Confidence            1 25899999965      2232         3344556689999999884  335444

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=96.61  E-value=0.0011  Score=56.74  Aligned_cols=101  Identities=12%  Similarity=0.046  Sum_probs=72.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccccccCCcCCCCceEEEEc
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      .+..|+|+-+|-|+.++...-...+..|+|+|.++..++..+++++.++... ..++.+|-....+.    ...|-|...
T Consensus       194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~----~~AdrVnLG  269 (351)
T KOG1227|consen  194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPR----LRADRVNLG  269 (351)
T ss_pred             ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCcc----ccchheeec
Confidence            3678999999999998733334456799999999999999999999887643 55666666654432    568888876


Q ss_pred             CcccHHHHHHHHccCcccCeE-EEEEe
Q 026122          154 AVAEMRILAEYCLPLVRVGGL-FVAAK  179 (243)
Q Consensus       154 ~~~~~~~~l~~~~~~LkpgG~-l~~~~  179 (243)
                      -.+.-+.-+-.+.+.|||.|- ++-++
T Consensus       270 LlPSse~~W~~A~k~Lk~eggsilHIH  296 (351)
T KOG1227|consen  270 LLPSSEQGWPTAIKALKPEGGSILHIH  296 (351)
T ss_pred             cccccccchHHHHHHhhhcCCcEEEEe
Confidence            655445555556667877544 44333

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=96.45  E-value=0.044  Score=47.60  Aligned_cols=135  Identities=14%  Similarity=0.157  Sum_probs=80.4

Q ss_pred             eEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC---
Q 026122           78 KLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA---  154 (243)
Q Consensus        78 ~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~---  154 (243)
                      +++|+-||.|.+++.+.+.. --.|.++|+++.+.+.-+.|..       ....+|+.++.... +++.+|+++...   
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag-~~~~~a~e~~~~a~~~y~~N~~-------~~~~~Di~~~~~~~-l~~~~D~l~ggpPCQ   72 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAG-FEVVWAVEIDPDACETYKANFP-------EVICGDITEIDPSD-LPKDVDLLIGGPPCQ   72 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTT-EEEEEEEESSHHHHHHHHHHHT-------EEEESHGGGCHHHH-HHHT-SEEEEE---T
T ss_pred             cEEEEccCccHHHHHHHhcC-cEEEEEeecCHHHHHhhhhccc-------cccccccccccccc-ccccceEEEeccCCc
Confidence            79999999998876666542 2368999999998877777654       78888998876431 112599999731   


Q ss_pred             ----------ccc-----HHHHHHHHccCcccCeEEEEEe--C---CCcHHHHHHHHHHHHHhCCeeeEEEEEec--CCC
Q 026122          155 ----------VAE-----MRILAEYCLPLVRVGGLFVAAK--G---HDPQEEVKNSERAVQLMGASLLQLCSVES--QSP  212 (243)
Q Consensus       155 ----------~~~-----~~~~l~~~~~~LkpgG~l~~~~--~---~~~~~~~~~~~~~l~~~g~~~~~~~~~~~--~~~  212 (243)
                                ..+     +..+++. .+.++|. .++++.  +   ......+..+.+.++..|+.+.. .-+..  -+.
T Consensus        73 ~fS~ag~~~~~~d~r~~L~~~~~~~-v~~~~Pk-~~~~ENV~~l~~~~~~~~~~~i~~~l~~lGY~v~~-~vlna~~yGv  149 (335)
T PF00145_consen   73 GFSIAGKRKGFDDPRNSLFFEFLRI-VKELKPK-YFLLENVPGLLSSKNGEVFKEILEELEELGYNVQW-RVLNAADYGV  149 (335)
T ss_dssp             TTSTTSTHHCCCCHTTSHHHHHHHH-HHHHS-S-EEEEEEEGGGGTGGGHHHHHHHHHHHHHTTEEEEE-EEEEGGGGTS
T ss_pred             eEeccccccccccccchhhHHHHHH-Hhhccce-EEEecccceeeccccccccccccccccccceeehh-ccccHhhCCC
Confidence                      111     2333332 2345674 334433  1   12234577888889999987643 22332  122


Q ss_pred             CC--ceEEEEEEee
Q 026122          213 FG--QRTAVVCLKS  224 (243)
Q Consensus       213 ~~--~r~~v~~~k~  224 (243)
                      +-  .|.+++..+.
T Consensus       150 PQ~R~R~fivg~r~  163 (335)
T PF00145_consen  150 PQNRERVFIVGIRK  163 (335)
T ss_dssp             SBE-EEEEEEEEEG
T ss_pred             CCceeeEEEEEECC
Confidence            22  5666555554

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=96.45  E-value=0.094  Score=43.98  Aligned_cols=105  Identities=17%  Similarity=0.090  Sum_probs=67.6

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEE
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIA-CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      ++++.+||=+|+++|.---..+.. -|..-|++||.|+..-..+-..+++  -+||-.+..|+.......-+-.-.|+|+
T Consensus       154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk--RtNiiPIiEDArhP~KYRmlVgmVDvIF  231 (317)
T KOG1596|consen  154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK--RTNIIPIIEDARHPAKYRMLVGMVDVIF  231 (317)
T ss_pred             ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc--cCCceeeeccCCCchheeeeeeeEEEEe
Confidence            467999999999999864455543 3678999999997543333222222  2467777778776321100013579999


Q ss_pred             EcC-cccHHH-HHHHHccCcccCeEEEEEe
Q 026122          152 ARA-VAEMRI-LAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       152 ~~~-~~~~~~-~l~~~~~~LkpgG~l~~~~  179 (243)
                      +.- .++... +.-.+.-.||+||.+++..
T Consensus       232 aDvaqpdq~RivaLNA~~FLk~gGhfvisi  261 (317)
T KOG1596|consen  232 ADVAQPDQARIVALNAQYFLKNGGHFVISI  261 (317)
T ss_pred             ccCCCchhhhhhhhhhhhhhccCCeEEEEE
Confidence            863 333333 3346778999999998765

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=96.40  E-value=0.067  Score=43.99  Aligned_cols=101  Identities=15%  Similarity=0.117  Sum_probs=69.3

Q ss_pred             CCeEEEEcCCCC----hHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccc-cccccCCcCCCCceE
Q 026122           76 NLKLVDVGTGAG----LPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRA-ETLGKDVSFREQYDV  149 (243)
Q Consensus        76 ~~~VLDiGcG~G----~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~-~~~~~~~~~~~~fD~  149 (243)
                      ...+++++|+.|    .+++..|....++++++|-.++......++.....++.+ ++|+.++. +++....   ...|+
T Consensus        42 AkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~---~~iDF  118 (218)
T PF07279_consen   42 AKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGL---KGIDF  118 (218)
T ss_pred             ceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhc---cCCCE
Confidence            457899976644    345555556678899999999988877888888888765 79998884 4443321   56999


Q ss_pred             EEEcC-cccHH-HHHHHHccCcccCeEEEEEeCC
Q 026122          150 AVARA-VAEMR-ILAEYCLPLVRVGGLFVAAKGH  181 (243)
Q Consensus       150 I~~~~-~~~~~-~~l~~~~~~LkpgG~l~~~~~~  181 (243)
                      ++..+ ..+.. ++++.+.  +.|.|.+++..+.
T Consensus       119 ~vVDc~~~d~~~~vl~~~~--~~~~GaVVV~~Na  150 (218)
T PF07279_consen  119 VVVDCKREDFAARVLRAAK--LSPRGAVVVCYNA  150 (218)
T ss_pred             EEEeCCchhHHHHHHHHhc--cCCCceEEEEecc
Confidence            99865 33455 6666433  5566776765543

The function of this family is unknown.

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=96.35  E-value=0.12  Score=44.50  Aligned_cols=107  Identities=14%  Similarity=0.071  Sum_probs=78.6

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc--CC--CCEEEEEccccccccCCcCCCCc
Q 026122           72 SCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT--QL--LNVQIVRGRAETLGKDVSFREQY  147 (243)
Q Consensus        72 ~~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~--~~v~~~~~d~~~~~~~~~~~~~f  147 (243)
                      .+...++||=||-|-|......++...=.+++.+|++...++..++.....  |.  +++.++.||...+-... ..++|
T Consensus       118 s~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~-~~~~~  196 (337)
T KOG1562|consen  118 SHPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDL-KENPF  196 (337)
T ss_pred             cCCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHh-ccCCc
Confidence            345578999999999988666665422258999999999998888876653  33  35999999876653321 13789


Q ss_pred             eEEEEcCc---c-----cHHHHHHHHccCcccCeEEEEEe
Q 026122          148 DVAVARAV---A-----EMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       148 D~I~~~~~---~-----~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      |+|+....   .     -.+.+++.+.+.||+||.++...
T Consensus       197 dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~  236 (337)
T KOG1562|consen  197 DVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG  236 (337)
T ss_pred             eEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence            99998531   1     24778888999999999987755

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=96.34  E-value=0.023  Score=50.02  Aligned_cols=96  Identities=10%  Similarity=0.114  Sum_probs=58.0

Q ss_pred             CCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCE-EEEEccccccccCCcCCCCceEEEE
Q 026122           75 SNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNV-QIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        75 ~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      ++.+||=+||| .|..++.+|+.....+|+++|.+++.++.++    ++|...+ .....+..+....   .+.+|+|+-
T Consensus       169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~----~lGa~~vi~~~~~~~~~~~~~---~g~~D~vid  241 (343)
T PRK09880        169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAR----EMGADKLVNPQNDDLDHYKAE---KGYFDVSFE  241 (343)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHH----HcCCcEEecCCcccHHHHhcc---CCCCCEEEE
Confidence            37889888875 3445566666654347999999998776654    3554321 1111122222111   145999986


Q ss_pred             cCcccHHHHHHHHccCcccCeEEEEEe
Q 026122          153 RAVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       153 ~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      ..-.  ...++.+.+.|++||+++..-
T Consensus       242 ~~G~--~~~~~~~~~~l~~~G~iv~~G  266 (343)
T PRK09880        242 VSGH--PSSINTCLEVTRAKGVMVQVG  266 (343)
T ss_pred             CCCC--HHHHHHHHHHhhcCCEEEEEc
Confidence            5322  234566778899999988654

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=96.33  E-value=0.014  Score=47.99  Aligned_cols=102  Identities=13%  Similarity=0.036  Sum_probs=62.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHc-------------------------------
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPD--WKVTLLESMNKRCVFLEHAVSLT-------------------------------  122 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~--~~v~~vD~s~~~~~~a~~~~~~~-------------------------------  122 (243)
                      +-++.|-+||+|.+.-.+...+++  ..|+|-|+++++++.|++|..-+                               
T Consensus        52 p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~sA  131 (246)
T PF11599_consen   52 PYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALESA  131 (246)
T ss_dssp             -EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred             CeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHHH
Confidence            568999999999998778877755  48999999999999998886310                               


Q ss_pred             -----------CCCCEEEEEccccccccCC--cCCCCceEEEEcC-------------cccHHHHHHHHccCcccCeEEE
Q 026122          123 -----------QLLNVQIVRGRAETLGKDV--SFREQYDVAVARA-------------VAEMRILAEYCLPLVRVGGLFV  176 (243)
Q Consensus       123 -----------~~~~v~~~~~d~~~~~~~~--~~~~~fD~I~~~~-------------~~~~~~~l~~~~~~LkpgG~l~  176 (243)
                                 +.....+.+.|+.+.....  ......|+|+..-             ......+++.+.+.|-.++.+.
T Consensus       132 ~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sVV~  211 (246)
T PF11599_consen  132 DRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSVVA  211 (246)
T ss_dssp             HHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-EEE
T ss_pred             HHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcEEE
Confidence                       1112457777777632100  1113469999841             1246889999999994444444


Q ss_pred             E
Q 026122          177 A  177 (243)
Q Consensus       177 ~  177 (243)
                      +
T Consensus       212 v  212 (246)
T PF11599_consen  212 V  212 (246)
T ss_dssp             E
T ss_pred             E
Confidence            4

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.32  E-value=0.02  Score=49.82  Aligned_cols=102  Identities=17%  Similarity=0.150  Sum_probs=67.9

Q ss_pred             CCCCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEc-c-cccc---ccCCcCCC
Q 026122           72 SCNSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRG-R-AETL---GKDVSFRE  145 (243)
Q Consensus        72 ~~~~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~-d-~~~~---~~~~~~~~  145 (243)
                      .++.+.+||=+|+| .|..++..|+..+..+|+.+|.++..++.|++    +|.+.+..... + ..++   ........
T Consensus       166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~----~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~  241 (354)
T KOG0024|consen  166 GVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK----FGATVTDPSSHKSSPQELAELVEKALGKK  241 (354)
T ss_pred             CcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH----hCCeEEeeccccccHHHHHHHHHhhcccc
Confidence            45679999999999 57788888999988999999999998888876    45432222211 1 1111   11000013


Q ss_pred             CceEEEEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122          146 QYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       146 ~fD~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      .+|+.+.-.  ..+..++.+...++.||.+++..
T Consensus       242 ~~d~~~dCs--G~~~~~~aai~a~r~gGt~vlvg  273 (354)
T KOG0024|consen  242 QPDVTFDCS--GAEVTIRAAIKATRSGGTVVLVG  273 (354)
T ss_pred             CCCeEEEcc--CchHHHHHHHHHhccCCEEEEec
Confidence            489988643  23455666777899999965543

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=96.23  E-value=0.0063  Score=53.28  Aligned_cols=104  Identities=11%  Similarity=-0.050  Sum_probs=77.7

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHH-------HHHHHHHHcCCCC--EEEEEccccccccCCcC
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCV-------FLEHAVSLTQLLN--VQIVRGRAETLGKDVSF  143 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~-------~a~~~~~~~~~~~--v~~~~~d~~~~~~~~~~  143 (243)
                      .++|+-|.|=-.|||.+.+..|.  -++.|+|.|++-.++.       ..+.|.++.|...  +.++.+|....+...  
T Consensus       206 v~pGdivyDPFVGTGslLvsaa~--FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rs--  281 (421)
T KOG2671|consen  206 VKPGDIVYDPFVGTGSLLVSAAH--FGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRS--  281 (421)
T ss_pred             cCCCCEEecCccccCceeeehhh--hcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhh--
Confidence            46799999999999988655553  3689999999987765       3466777888542  778888887755432  


Q ss_pred             CCCceEEEEcC-------------------------------------cccHHHHHHHHccCcccCeEEEEEeC
Q 026122          144 REQYDVAVARA-------------------------------------VAEMRILAEYCLPLVRVGGLFVAAKG  180 (243)
Q Consensus       144 ~~~fD~I~~~~-------------------------------------~~~~~~~l~~~~~~LkpgG~l~~~~~  180 (243)
                      ...||.|+|..                                     ..-+..++.-..+.|..||++++..+
T Consensus       282 n~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p  355 (421)
T KOG2671|consen  282 NLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLP  355 (421)
T ss_pred             cceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecC
Confidence            35799999940                                     00146677778899999999998776

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=96.16  E-value=0.021  Score=47.71  Aligned_cols=73  Identities=25%  Similarity=0.310  Sum_probs=47.5

Q ss_pred             CeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc----CC-----CCEEEEEccccccccCCcCCCCc
Q 026122           77 LKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT----QL-----LNVQIVRGRAETLGKDVSFREQY  147 (243)
Q Consensus        77 ~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~----~~-----~~v~~~~~d~~~~~~~~~~~~~f  147 (243)
                      .+|||.=+|-|.-++.+|..  +++|+++|.|+-.....+.-.++.    ..     .+++++++|..++-...  .++|
T Consensus        77 ~~VLDaTaGLG~Da~vlA~~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~--~~s~  152 (234)
T PF04445_consen   77 PSVLDATAGLGRDAFVLASL--GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQP--DNSF  152 (234)
T ss_dssp             --EEETT-TTSHHHHHHHHH--T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCH--SS--
T ss_pred             CEEEECCCcchHHHHHHHcc--CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhc--CCCC
Confidence            48999999999999888865  689999999998887776554332    22     25999999998864421  3789


Q ss_pred             eEEEEc
Q 026122          148 DVAVAR  153 (243)
Q Consensus       148 D~I~~~  153 (243)
                      |+|+..
T Consensus       153 DVVY~D  158 (234)
T PF04445_consen  153 DVVYFD  158 (234)
T ss_dssp             SEEEE-
T ss_pred             CEEEEC
Confidence            999995

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=96.15  E-value=0.032  Score=49.60  Aligned_cols=98  Identities=20%  Similarity=0.118  Sum_probs=64.4

Q ss_pred             CCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEc-cc-cccccCCcCCCCceEEEE
Q 026122           76 NLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRG-RA-ETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        76 ~~~VLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~-d~-~~~~~~~~~~~~fD~I~~  152 (243)
                      +.+|+=+|||+ |.+++.+++..+..+|+.+|.+++.+++|++..   +...+..... +. ...... .....+|+++-
T Consensus       169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~---g~~~~~~~~~~~~~~~~~~~-t~g~g~D~vie  244 (350)
T COG1063         169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAG---GADVVVNPSEDDAGAEILEL-TGGRGADVVIE  244 (350)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhC---CCeEeecCccccHHHHHHHH-hCCCCCCEEEE
Confidence            45999999994 878888888888899999999999888887632   1110111111 11 111000 00135999995


Q ss_pred             cCcccHHHHHHHHccCcccCeEEEEEe
Q 026122          153 RAVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       153 ~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      ..-  ....++.+.+.+++||.+.+.-
T Consensus       245 ~~G--~~~~~~~ai~~~r~gG~v~~vG  269 (350)
T COG1063         245 AVG--SPPALDQALEALRPGGTVVVVG  269 (350)
T ss_pred             CCC--CHHHHHHHHHHhcCCCEEEEEe
Confidence            432  3446778888999999988765

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=96.05  E-value=0.047  Score=48.14  Aligned_cols=92  Identities=11%  Similarity=0.112  Sum_probs=56.9

Q ss_pred             CCCCeEEEEcCC-CChHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEE
Q 026122           74 NSNLKLVDVGTG-AGLPGLVLAIA-CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        74 ~~~~~VLDiGcG-~G~~~~~la~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      .++.+||=+||| .|..++.+++. .++.+|+++|.+++.++.+++    .+.  ....    .+...    ...+|+|+
T Consensus       162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~--~~~~----~~~~~----~~g~d~vi  227 (341)
T cd08237         162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE--TYLI----DDIPE----DLAVDHAF  227 (341)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc--eeeh----hhhhh----ccCCcEEE
Confidence            458899999975 23333444544 455789999999988777654    221  1111    11111    12489999


Q ss_pred             EcCccc-HHHHHHHHccCcccCeEEEEEe
Q 026122          152 ARAVAE-MRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       152 ~~~~~~-~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      -..-.. ....++.+.+.|++||++++.-
T Consensus       228 D~~G~~~~~~~~~~~~~~l~~~G~iv~~G  256 (341)
T cd08237         228 ECVGGRGSQSAINQIIDYIRPQGTIGLMG  256 (341)
T ss_pred             ECCCCCccHHHHHHHHHhCcCCcEEEEEe
Confidence            543221 3456777888999999987653

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=95.89  E-value=0.035  Score=40.62  Aligned_cols=32  Identities=22%  Similarity=0.274  Sum_probs=25.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCH
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMN  109 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~  109 (243)
                      ....+|||||+|.+.-.|...  +.+-.|+|.-.
T Consensus        59 ~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~R~   90 (112)
T PF07757_consen   59 FQGFVDLGCGNGLLVYILNSE--GYPGWGIDARR   90 (112)
T ss_pred             CCceEEccCCchHHHHHHHhC--CCCcccccccc
Confidence            457999999999987666644  67889999853

; GO: 0008168 methyltransferase activity

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=95.83  E-value=0.023  Score=52.45  Aligned_cols=97  Identities=16%  Similarity=0.140  Sum_probs=70.6

Q ss_pred             CeEEEEcCCCChHHH---HHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEE
Q 026122           77 LKLVDVGTGAGLPGL---VLAIA-CPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        77 ~~VLDiGcG~G~~~~---~la~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      ..|+=+|+|-|-+.-   ..|.. ....++++||.++.++...+. .+....+ +|+++.+|+.++..+   ..+.|+++
T Consensus       369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w~ap---~eq~DI~V  444 (649)
T KOG0822|consen  369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKWNAP---REQADIIV  444 (649)
T ss_pred             EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccccccCCc---hhhccchH
Confidence            467889999997642   22322 235799999999999988766 3333444 499999999998753   26899999


Q ss_pred             EcC---ccc---HHHHHHHHccCcccCeEEEE
Q 026122          152 ARA---VAE---MRILAEYCLPLVRVGGLFVA  177 (243)
Q Consensus       152 ~~~---~~~---~~~~l~~~~~~LkpgG~l~~  177 (243)
                      +.-   +.+   -.+.+..+.+.|||+|+.+-
T Consensus       445 SELLGSFGDNELSPECLDG~q~fLkpdgIsIP  476 (649)
T KOG0822|consen  445 SELLGSFGDNELSPECLDGAQKFLKPDGISIP  476 (649)
T ss_pred             HHhhccccCccCCHHHHHHHHhhcCCCceEcc
Confidence            842   111   26677889999999998664

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=95.78  E-value=0.065  Score=50.02  Aligned_cols=100  Identities=14%  Similarity=0.198  Sum_probs=62.1

Q ss_pred             CCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcc--------ccccccC-----
Q 026122           75 SNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGR--------AETLGKD-----  140 (243)
Q Consensus        75 ~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d--------~~~~~~~-----  140 (243)
                      ++.+|+=+||| .|..++..|+..+ ++|+++|.+++..+.+++    +|.+.+.+-..+        +.+....     
T Consensus       164 pg~kVlViGaG~iGL~Ai~~Ak~lG-A~V~a~D~~~~rle~aes----lGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~  238 (509)
T PRK09424        164 PPAKVLVIGAGVAGLAAIGAAGSLG-AIVRAFDTRPEVAEQVES----MGAEFLELDFEEEGGSGDGYAKVMSEEFIKAE  238 (509)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHH----cCCeEEEeccccccccccchhhhcchhHHHHH
Confidence            48899999999 5667777787764 599999999986665544    454311111100        0000000     


Q ss_pred             ----CcCCCCceEEEEcCcc----cHHHHHHHHccCcccCeEEEEEe
Q 026122          141 ----VSFREQYDVAVARAVA----EMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       141 ----~~~~~~fD~I~~~~~~----~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                          ......+|+|+..+..    ....+.+++.+.+||||.++.+.
T Consensus       239 ~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg  285 (509)
T PRK09424        239 MALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLA  285 (509)
T ss_pred             HHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEc
Confidence                0001359999986532    23333588899999999987654

>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function

Probab=95.76  E-value=0.022  Score=42.97  Aligned_cols=84  Identities=15%  Similarity=0.157  Sum_probs=56.0

Q ss_pred             EEEEEccccccccCCcCCCCceEEEEcCccc-------HHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCC
Q 026122          127 VQIVRGRAETLGKDVSFREQYDVAVARAVAE-------MRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGA  199 (243)
Q Consensus       127 v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~~-------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~  199 (243)
                      +++..+|+.+....  ....+|+|+..+++.       -.++++.+.++++|||.+.-....      ..+++.|..+||
T Consensus        33 L~L~~gDa~~~l~~--l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys~a------~~Vr~~L~~aGF  104 (124)
T PF05430_consen   33 LTLWFGDAREMLPQ--LDARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATYSSA------GAVRRALQQAGF  104 (124)
T ss_dssp             EEEEES-HHHHHHH--B-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES--B------HHHHHHHHHCTE
T ss_pred             EEEEEcHHHHHHHh--CcccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEeech------HHHHHHHHHcCC
Confidence            67888998775432  236899999976431       278999999999999997764442      335677889999


Q ss_pred             eeeEEEEEecCCCCCceEEEEEEe
Q 026122          200 SLLQLCSVESQSPFGQRTAVVCLK  223 (243)
Q Consensus       200 ~~~~~~~~~~~~~~~~r~~v~~~k  223 (243)
                      .+.+.     ++..+.|++....|
T Consensus       105 ~v~~~-----~g~g~Kr~~~~a~~  123 (124)
T PF05430_consen  105 EVEKV-----PGFGRKREMLRAVK  123 (124)
T ss_dssp             EEEEE-----E-STTSSEEEEEEC
T ss_pred             EEEEc-----CCCCCcchheEEEc
Confidence            87654     35566788776654

; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=95.74  E-value=0.12  Score=41.11  Aligned_cols=124  Identities=17%  Similarity=0.108  Sum_probs=72.8

Q ss_pred             EcCCCChHHHHHHHHCC-CCEEEEE--eCCHHHHHH---HHHHHHHcCCCCEEE-EEccccccccCC-cCCCCceEEEEc
Q 026122           82 VGTGAGLPGLVLAIACP-DWKVTLL--ESMNKRCVF---LEHAVSLTQLLNVQI-VRGRAETLGKDV-SFREQYDVAVAR  153 (243)
Q Consensus        82 iGcG~G~~~~~la~~~~-~~~v~~v--D~s~~~~~~---a~~~~~~~~~~~v~~-~~~d~~~~~~~~-~~~~~fD~I~~~  153 (243)
                      ||=|.=..++.|++.++ +.++++.  |..++..+.   +..+++.+.-.++++ ...|+..+.... ....+||.|+.|
T Consensus         3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN   82 (166)
T PF10354_consen    3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN   82 (166)
T ss_pred             eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence            45555566777777766 5566555  444333322   234555543233333 445777665432 113679999996


Q ss_pred             C--cc---------------cHHHHHHHHccCcccCeEEEEEeCCCc---HHHHHHHHHHHHHhCCeeeEEEEEe
Q 026122          154 A--VA---------------EMRILAEYCLPLVRVGGLFVAAKGHDP---QEEVKNSERAVQLMGASLLQLCSVE  208 (243)
Q Consensus       154 ~--~~---------------~~~~~l~~~~~~LkpgG~l~~~~~~~~---~~~~~~~~~~l~~~g~~~~~~~~~~  208 (243)
                      -  ..               =+..+++.+.++|+++|.+.+.....+   .-.+.   +..+..|+...+...+.
T Consensus        83 FPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py~~W~i~---~lA~~~gl~l~~~~~F~  154 (166)
T PF10354_consen   83 FPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPYDSWNIE---ELAAEAGLVLVRKVPFD  154 (166)
T ss_pred             CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCccccHH---HHHHhcCCEEEEEecCC
Confidence            2  11               157889999999999999888774322   22333   33347888776665544

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=95.73  E-value=0.0065  Score=54.52  Aligned_cols=66  Identities=17%  Similarity=0.125  Sum_probs=57.3

Q ss_pred             CCCCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC--CEEEEEccccccc
Q 026122           71 SSCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL--NVQIVRGRAETLG  138 (243)
Q Consensus        71 ~~~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~~  138 (243)
                      +.+++|..|.|+.||.|-.++.+++.  +|.|++-|.+++++++.+.++..+.+.  ++++++.|+.++.
T Consensus       245 g~fk~gevv~D~FaGvGPfa~Pa~kK--~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Fl  312 (495)
T KOG2078|consen  245 GLFKPGEVVCDVFAGVGPFALPAAKK--GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFL  312 (495)
T ss_pred             hccCCcchhhhhhcCcCccccchhhc--CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHh
Confidence            35677999999999999999888865  599999999999999999999988774  3899988887765

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=95.59  E-value=0.075  Score=46.14  Aligned_cols=97  Identities=15%  Similarity=0.135  Sum_probs=60.2

Q ss_pred             CCCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEc-cccc-cccCCcCCCCceE
Q 026122           73 CNSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRG-RAET-LGKDVSFREQYDV  149 (243)
Q Consensus        73 ~~~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~-d~~~-~~~~~~~~~~fD~  149 (243)
                      +.++.+||..|+| .|..++.+|+.. +.+|++++.+++..+.+++    .+.+.+-.... +..+ +...  ....+|+
T Consensus       163 ~~~~~~vli~g~g~vG~~~~~la~~~-G~~V~~~~~s~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~--~~~~~D~  235 (338)
T cd08254         163 VKPGETVLVIGLGGLGLNAVQIAKAM-GAAVIAVDIKEEKLELAKE----LGADEVLNSLDDSPKDKKAAG--LGGGFDV  235 (338)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHH----hCCCEEEcCCCcCHHHHHHHh--cCCCceE
Confidence            4557889988876 366777777765 5789999999987665543    45432111111 1100 0011  1256999


Q ss_pred             EEEcCcccHHHHHHHHccCcccCeEEEEE
Q 026122          150 AVARAVAEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       150 I~~~~~~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                      ++.....  ...++.+.+.|+++|.++..
T Consensus       236 vid~~g~--~~~~~~~~~~l~~~G~~v~~  262 (338)
T cd08254         236 IFDFVGT--QPTFEDAQKAVKPGGRIVVV  262 (338)
T ss_pred             EEECCCC--HHHHHHHHHHhhcCCEEEEE
Confidence            8864321  44667788999999998765

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=95.54  E-value=0.22  Score=43.72  Aligned_cols=132  Identities=15%  Similarity=0.120  Sum_probs=77.7

Q ss_pred             EEEEcCCCChHHHHHHHHCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC---
Q 026122           79 LVDVGTGAGLPGLVLAIACPDWK-VTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA---  154 (243)
Q Consensus        79 VLDiGcG~G~~~~~la~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~---  154 (243)
                      |+|+.||.|.+++-+.+.  +.+ +.++|+++.+++..+.|..     + .++++|+.++.... . ..+|+++...   
T Consensus         1 vidLF~G~GG~~~Gl~~a--G~~~~~a~e~~~~a~~ty~~N~~-----~-~~~~~Di~~~~~~~-~-~~~dvl~gg~PCq   70 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQA--GFKCVFASEIDKYAQKTYEANFG-----N-KVPFGDITKISPSD-I-PDFDILLGGFPCQ   70 (315)
T ss_pred             CEEEecCccHHHHHHHHc--CCeEEEEEeCCHHHHHHHHHhCC-----C-CCCccChhhhhhhh-C-CCcCEEEecCCCc
Confidence            689999999887666543  455 5679999988777766642     2 45567888875421 1 3589998731   


Q ss_pred             ----------ccc-HHHHHHHH---ccCcccCeEEEEEeCC------CcHHHHHHHHHHHHHhCCeeeEEEEEec--CC-
Q 026122          155 ----------VAE-MRILAEYC---LPLVRVGGLFVAAKGH------DPQEEVKNSERAVQLMGASLLQLCSVES--QS-  211 (243)
Q Consensus       155 ----------~~~-~~~~l~~~---~~~LkpgG~l~~~~~~------~~~~~~~~~~~~l~~~g~~~~~~~~~~~--~~-  211 (243)
                                ..+ ...++...   .+.++|.  ++++++.      .....+..+.+.++..|+.+... -+..  -+ 
T Consensus        71 ~fS~ag~~~~~~d~r~~L~~~~~r~i~~~~P~--~~v~ENV~~l~~~~~~~~~~~i~~~l~~~GY~v~~~-~l~a~dyGv  147 (315)
T TIGR00675        71 PFSIAGKRKGFEDTRGTLFFEIVRILKEKKPK--FFLLENVKGLVSHDKGRTFKVIIETLEELGYKVYYK-VLNAKDFGV  147 (315)
T ss_pred             ccchhcccCCCCCchhhHHHHHHHHHhhcCCC--EEEeeccHHHHhcccchHHHHHHHHHHhCCCEEEEE-EEcHHHCCC
Confidence                      111 12222222   2345674  4444432      12345677788889999976432 2221  11 


Q ss_pred             -CCCceEEEEEEe
Q 026122          212 -PFGQRTAVVCLK  223 (243)
Q Consensus       212 -~~~~r~~v~~~k  223 (243)
                       ...+|.+++..+
T Consensus       148 PQ~R~R~f~ia~r  160 (315)
T TIGR00675       148 PQNRERIYIVGFR  160 (315)
T ss_pred             CCCccEEEEEEEe
Confidence             223666666655

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=95.48  E-value=0.19  Score=44.32  Aligned_cols=115  Identities=15%  Similarity=0.147  Sum_probs=72.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCC-CceEEEEcC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFRE-QYDVAVARA  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~-~fD~I~~~~  154 (243)
                      ..+++|+-||.|.+.+-+.... ---+.++|+++.+++.-+.|...     ..++..|+.++.... ... .+|+++...
T Consensus         3 ~~~~idLFsG~GG~~lGf~~ag-f~~~~a~Eid~~a~~ty~~n~~~-----~~~~~~di~~~~~~~-~~~~~~DvligGp   75 (328)
T COG0270           3 KMKVIDLFAGIGGLSLGFEEAG-FEIVFANEIDPPAVATYKANFPH-----GDIILGDIKELDGEA-LRKSDVDVLIGGP   75 (328)
T ss_pred             CceEEeeccCCchHHHHHHhcC-CeEEEEEecCHHHHHHHHHhCCC-----CceeechHhhcChhh-ccccCCCEEEeCC
Confidence            4589999999998876666542 23578999999877766665432     456777877765432 112 689999841


Q ss_pred             -------------ccc----H-HHHHHHHccCcccCeEEEEEeCC-C----cHHHHHHHHHHHHHhCCe
Q 026122          155 -------------VAE----M-RILAEYCLPLVRVGGLFVAAKGH-D----PQEEVKNSERAVQLMGAS  200 (243)
Q Consensus       155 -------------~~~----~-~~~l~~~~~~LkpgG~l~~~~~~-~----~~~~~~~~~~~l~~~g~~  200 (243)
                                   ..+    + -.++ .+...++|  .++++++. .    ....+..+.+.|++.|+.
T Consensus        76 PCQ~FS~aG~r~~~~D~R~~L~~~~~-r~I~~~~P--~~fv~ENV~gl~~~~~~~~~~i~~~L~~~GY~  141 (328)
T COG0270          76 PCQDFSIAGKRRGYDDPRGSLFLEFI-RLIEQLRP--KFFVLENVKGLLSSKGQTFDEIKKELEELGYG  141 (328)
T ss_pred             CCcchhhcCcccCCcCccceeeHHHH-HHHHhhCC--CEEEEecCchHHhcCchHHHHHHHHHHHcCCc
Confidence                         111    1 1222 23345566  44554432 1    223677788899999996

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=95.34  E-value=0.035  Score=45.44  Aligned_cols=42  Identities=14%  Similarity=0.153  Sum_probs=31.2

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHH
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEH  117 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~  117 (243)
                      ++++.|||--||+|..+++..+.  +-+.+|+|++++.++.|++
T Consensus       190 ~~gdiVlDpF~GSGTT~~aa~~l--~R~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  190 NPGDIVLDPFAGSGTTAVAAEEL--GRRYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             -TT-EEEETT-TTTHHHHHHHHT--T-EEEEEESSHHHHHHHHH
T ss_pred             ccceeeehhhhccChHHHHHHHc--CCeEEEEeCCHHHHHHhcC
Confidence            34889999999999987554433  5689999999999988864

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=95.33  E-value=0.033  Score=49.47  Aligned_cols=44  Identities=20%  Similarity=0.236  Sum_probs=37.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHH
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAV  119 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~  119 (243)
                      +-..|+|+|+|.|.++..++..+ +..|.+||-|+...+.|++.-
T Consensus       153 gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegsq~~~~ra~rLd  196 (476)
T KOG2651|consen  153 GIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGSQRLVERAQRLD  196 (476)
T ss_pred             CCCeeEEcCCCchHHHHHHhhcc-CceEEEeccchHHHHHHHHHH
Confidence            35689999999999999999776 689999999988777776543

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=95.30  E-value=0.016  Score=43.36  Aligned_cols=88  Identities=17%  Similarity=0.148  Sum_probs=56.3

Q ss_pred             CCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccc---cCCcCCCCceEEEEcCcccHHHH
Q 026122           85 GAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLG---KDVSFREQYDVAVARAVAEMRIL  161 (243)
Q Consensus        85 G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---~~~~~~~~fD~I~~~~~~~~~~~  161 (243)
                      |.|..++.+|+..+ ++|+++|.++...+.++    ++|..  .++..+-.++.   ........+|+|+-....  ...
T Consensus         1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~----~~Ga~--~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~--~~~   71 (130)
T PF00107_consen    1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAK----ELGAD--HVIDYSDDDFVEQIRELTGGRGVDVVIDCVGS--GDT   71 (130)
T ss_dssp             HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHH----HTTES--EEEETTTSSHHHHHHHHTTTSSEEEEEESSSS--HHH
T ss_pred             ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHH----hhccc--ccccccccccccccccccccccceEEEEecCc--HHH
Confidence            35778889998876 99999999998666654    45533  22222222111   000001369999965332  457


Q ss_pred             HHHHccCcccCeEEEEEeCC
Q 026122          162 AEYCLPLVRVGGLFVAAKGH  181 (243)
Q Consensus       162 l~~~~~~LkpgG~l~~~~~~  181 (243)
                      ++.+...++++|.++++-..
T Consensus        72 ~~~~~~~l~~~G~~v~vg~~   91 (130)
T PF00107_consen   72 LQEAIKLLRPGGRIVVVGVY   91 (130)
T ss_dssp             HHHHHHHEEEEEEEEEESST
T ss_pred             HHHHHHHhccCCEEEEEEcc
Confidence            77888899999998886643

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>PRK11524 putative methyltransferase; Provisional

Probab=95.20  E-value=0.049  Score=47.01  Aligned_cols=46  Identities=15%  Similarity=0.034  Sum_probs=37.8

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSL  121 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~  121 (243)
                      ++|+.|||--||||.-+++..+.  +-+.+|+|++++.++.|++.++.
T Consensus       207 ~~GD~VLDPF~GSGTT~~AA~~l--gR~~IG~Ei~~~Y~~~a~~Rl~~  252 (284)
T PRK11524        207 NPGDIVLDPFAGSFTTGAVAKAS--GRKFIGIEINSEYIKMGLRRLDV  252 (284)
T ss_pred             CCCCEEEECCCCCcHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHHh
Confidence            45899999999999887544433  56899999999999999888653

>cd08230 glucose_DH Glucose dehydrogenase

Probab=95.16  E-value=0.12  Score=45.57  Aligned_cols=94  Identities=16%  Similarity=0.170  Sum_probs=56.8

Q ss_pred             CCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeC---CHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEE
Q 026122           75 SNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLES---MNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVA  150 (243)
Q Consensus        75 ~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~---s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I  150 (243)
                      ++.+||=+|+| .|..++.+|+.. +++|++++.   +++..+.+    +++|...+.....+..+ ...   ...+|+|
T Consensus       172 ~g~~vlI~G~G~vG~~a~q~ak~~-G~~vi~~~~~~~~~~~~~~~----~~~Ga~~v~~~~~~~~~-~~~---~~~~d~v  242 (355)
T cd08230         172 NPRRALVLGAGPIGLLAALLLRLR-GFEVYVLNRRDPPDPKADIV----EELGATYVNSSKTPVAE-VKL---VGEFDLI  242 (355)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHH----HHcCCEEecCCccchhh-hhh---cCCCCEE
Confidence            47899999886 355566667665 568999997   56655544    34554312111111111 011   2469999


Q ss_pred             EEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122          151 VARAVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       151 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      +-..-.  ...+..+.+.|++||++++.-
T Consensus       243 id~~g~--~~~~~~~~~~l~~~G~~v~~G  269 (355)
T cd08230         243 IEATGV--PPLAFEALPALAPNGVVILFG  269 (355)
T ss_pred             EECcCC--HHHHHHHHHHccCCcEEEEEe
Confidence            975432  235677788999999987654

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins

Probab=95.04  E-value=0.73  Score=39.02  Aligned_cols=124  Identities=16%  Similarity=0.163  Sum_probs=67.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHH---C--CCCEEEEEeCCH--------------------------HHHHHHHHHHHHcCC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIA---C--PDWKVTLLESMN--------------------------KRCVFLEHAVSLTQL  124 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~---~--~~~~v~~vD~s~--------------------------~~~~~a~~~~~~~~~  124 (243)
                      .+.|+|+||=.|..++.++..   +  ++-++++.|.=+                          ...+..+++..+.++
T Consensus        75 pGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~gl  154 (248)
T PF05711_consen   75 PGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYGL  154 (248)
T ss_dssp             -SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTTT
T ss_pred             CeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcCC
Confidence            568999999999877655432   1  356799999211                          123344444455554


Q ss_pred             --CCEEEEEccccccccCCcCCCCceEEEEcC--cccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCe
Q 026122          125 --LNVQIVRGRAETLGKDVSFREQYDVAVARA--VAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGAS  200 (243)
Q Consensus       125 --~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~--~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~  200 (243)
                        .+++++.|.+.+..+.. ..+++-++...+  ...-...++.+...|.|||.+++-. ......-+.+.+..++.|..
T Consensus       155 ~~~~v~~vkG~F~dTLp~~-p~~~IAll~lD~DlYesT~~aLe~lyprl~~GGiIi~DD-Y~~~gcr~AvdeF~~~~gi~  232 (248)
T PF05711_consen  155 LDDNVRFVKGWFPDTLPDA-PIERIALLHLDCDLYESTKDALEFLYPRLSPGGIIIFDD-YGHPGCRKAVDEFRAEHGIT  232 (248)
T ss_dssp             SSTTEEEEES-HHHHCCC--TT--EEEEEE---SHHHHHHHHHHHGGGEEEEEEEEESS-TTTHHHHHHHHHHHHHTT--
T ss_pred             CcccEEEECCcchhhhccC-CCccEEEEEEeccchHHHHHHHHHHHhhcCCCeEEEEeC-CCChHHHHHHHHHHHHcCCC
Confidence              46999999998754421 113343333332  3356788899999999999977743 33222222333444577764


Q ss_pred             e
Q 026122          201 L  201 (243)
Q Consensus       201 ~  201 (243)
                      .
T Consensus       233 ~  233 (248)
T PF05711_consen  233 D  233 (248)
T ss_dssp             S
T ss_pred             C
Confidence            3

TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.

>PRK13699 putative methylase; Provisional

Probab=94.85  E-value=0.082  Score=44.16  Aligned_cols=47  Identities=11%  Similarity=0.072  Sum_probs=38.1

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT  122 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~  122 (243)
                      ++++.|||--||+|..+++..+.  +-+.+|+|++++..+.+.+.++..
T Consensus       162 ~~g~~vlDpf~Gsgtt~~aa~~~--~r~~~g~e~~~~y~~~~~~r~~~~  208 (227)
T PRK13699        162 HPNAIVLDPFAGSGSTCVAALQS--GRRYIGIELLEQYHRAGQQRLAAV  208 (227)
T ss_pred             CCCCEEEeCCCCCCHHHHHHHHc--CCCEEEEecCHHHHHHHHHHHHHH
Confidence            35889999999999887554433  568999999999999998877653

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=94.80  E-value=0.14  Score=45.25  Aligned_cols=100  Identities=10%  Similarity=0.004  Sum_probs=57.7

Q ss_pred             CCCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccc-cccCCcCCCCceE
Q 026122           73 CNSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAET-LGKDVSFREQYDV  149 (243)
Q Consensus        73 ~~~~~~VLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~-~~~~~~~~~~fD~  149 (243)
                      +.++.+||=.|||. |..++.+|+..+..+|+++|.+++..+.++    ++|.+. +.....+..+ +... .....+|+
T Consensus       174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~----~~Ga~~~i~~~~~~~~~~i~~~-~~~~g~d~  248 (358)
T TIGR03451       174 VKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAR----EFGATHTVNSSGTDPVEAIRAL-TGGFGADV  248 (358)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH----HcCCceEEcCCCcCHHHHHHHH-hCCCCCCE
Confidence            45588999888752 444566676654336999999998766664    345431 1111111111 1100 00135899


Q ss_pred             EEEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122          150 AVARAVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       150 I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      |+-....  ...++.+.+.+++||++++.-
T Consensus       249 vid~~g~--~~~~~~~~~~~~~~G~iv~~G  276 (358)
T TIGR03451       249 VIDAVGR--PETYKQAFYARDLAGTVVLVG  276 (358)
T ss_pred             EEECCCC--HHHHHHHHHHhccCCEEEEEC
Confidence            9864322  234566677899999987653

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=94.72  E-value=0.13  Score=46.03  Aligned_cols=107  Identities=17%  Similarity=0.145  Sum_probs=71.9

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHH-------HcCC--CCEEEEEccccccccCCcC
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVS-------LTQL--LNVQIVRGRAETLGKDVSF  143 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~-------~~~~--~~v~~~~~d~~~~~~~~~~  143 (243)
                      +++++...|+|+|.|.+....|.......=+|+++.....+.+..+.+       ..|-  ..++.++++..+-......
T Consensus       190 ~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~eI  269 (419)
T KOG3924|consen  190 LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVTEI  269 (419)
T ss_pred             cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHHHH
Confidence            345889999999999988777766555678899988776666654432       2343  2388888888764432222


Q ss_pred             CCCceEEEEcCcc---cHHHHHHHHccCcccCeEEEEEe
Q 026122          144 REQYDVAVARAVA---EMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       144 ~~~fD~I~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      ....++|++|++.   ++..=++++..-+++|-+++-..
T Consensus       270 ~~eatvi~vNN~~Fdp~L~lr~~eil~~ck~gtrIiS~~  308 (419)
T KOG3924|consen  270 QTEATVIFVNNVAFDPELKLRSKEILQKCKDGTRIISSK  308 (419)
T ss_pred             hhcceEEEEecccCCHHHHHhhHHHHhhCCCcceEeccc
Confidence            3568999998743   33333346667788888866433

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=94.55  E-value=0.4  Score=42.00  Aligned_cols=91  Identities=19%  Similarity=0.045  Sum_probs=56.6

Q ss_pred             CCCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEE
Q 026122           73 CNSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        73 ~~~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      ++++.+||=.|+| .|..++.+|+.. +++|++++.+++..+.+    +++|...  ++.  ..+..     .+.+|+++
T Consensus       163 ~~~g~~VlV~G~g~iG~~a~~~a~~~-G~~vi~~~~~~~~~~~a----~~~Ga~~--vi~--~~~~~-----~~~~d~~i  228 (329)
T TIGR02822       163 LPPGGRLGLYGFGGSAHLTAQVALAQ-GATVHVMTRGAAARRLA----LALGAAS--AGG--AYDTP-----PEPLDAAI  228 (329)
T ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHH----HHhCCce--ecc--ccccC-----cccceEEE
Confidence            3558899999975 333455666665 56899999998865554    4466542  121  11111     14588766


Q ss_pred             EcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122          152 ARAVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       152 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      .....  ...+....+.|++||++++.-
T Consensus       229 ~~~~~--~~~~~~~~~~l~~~G~~v~~G  254 (329)
T TIGR02822       229 LFAPA--GGLVPPALEALDRGGVLAVAG  254 (329)
T ss_pred             ECCCc--HHHHHHHHHhhCCCcEEEEEe
Confidence            43221  245777888999999987644

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=94.13  E-value=0.19  Score=41.82  Aligned_cols=98  Identities=19%  Similarity=0.246  Sum_probs=59.2

Q ss_pred             CCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccC--CcCCCCceEE
Q 026122           74 NSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD--VSFREQYDVA  150 (243)
Q Consensus        74 ~~~~~VLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~--~~~~~~fD~I  150 (243)
                      .++.+||..|+|+ |...+.+++.. +.+|++++.+++..+.+++    .+...  ++...-.+....  ......+|++
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~----~g~~~--~~~~~~~~~~~~~~~~~~~~~d~v  205 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAKAA-GARVIVTDRSDEKLELAKE----LGADH--VIDYKEEDLEEELRLTGGGGADVV  205 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHH----hCCce--eccCCcCCHHHHHHHhcCCCCCEE
Confidence            4588999999996 55555666654 5899999999876665533    33221  111111111000  0012569999


Q ss_pred             EEcCcccHHHHHHHHccCcccCeEEEEEeC
Q 026122          151 VARAVAEMRILAEYCLPLVRVGGLFVAAKG  180 (243)
Q Consensus       151 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  180 (243)
                      +.....  ...+..+.+.++++|.++....
T Consensus       206 i~~~~~--~~~~~~~~~~l~~~G~~v~~~~  233 (271)
T cd05188         206 IDAVGG--PETLAQALRLLRPGGRIVVVGG  233 (271)
T ss_pred             EECCCC--HHHHHHHHHhcccCCEEEEEcc
Confidence            975432  1445667788899999887653

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=94.12  E-value=0.13  Score=43.86  Aligned_cols=65  Identities=17%  Similarity=0.217  Sum_probs=44.8

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHC-----CCCEEEEEeCCHHHHHHHHHHHHHcCC-CCEEEEEcccccccc
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIAC-----PDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGK  139 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~-----~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~  139 (243)
                      ++...++|+|||.|.++..+++..     +...++.||....... .-...+.... ..++=+..|+.++..
T Consensus        17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K-~D~~~~~~~~~~~~~R~riDI~dl~l   87 (259)
T PF05206_consen   17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHK-ADNKIRKDESEPKFERLRIDIKDLDL   87 (259)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCccccc-chhhhhccCCCCceEEEEEEeeccch
Confidence            447799999999999999999887     4578999998653322 2222222221 236777778888764

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

>PTZ00357 methyltransferase; Provisional

Probab=94.03  E-value=0.2  Score=48.07  Aligned_cols=97  Identities=14%  Similarity=0.114  Sum_probs=60.8

Q ss_pred             eEEEEcCCCChHH---HHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHH-cCCC--------CEEEEEccccccccCC---
Q 026122           78 KLVDVGTGAGLPG---LVLAIAC-PDWKVTLLESMNKRCVFLEHAVSL-TQLL--------NVQIVRGRAETLGKDV---  141 (243)
Q Consensus        78 ~VLDiGcG~G~~~---~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~-~~~~--------~v~~~~~d~~~~~~~~---  141 (243)
                      .|+=+|+|-|-+-   +..+... -..+|++||.|+.++.+...+.+. ....        .|+++..|+.++....   
T Consensus       703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~  782 (1072)
T PTZ00357        703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG  782 (1072)
T ss_pred             EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence            5899999999763   2222222 246899999997765555444322 2332        2899999999985321   


Q ss_pred             -----cCCCCceEEEEcC---ccc---HHHHHHHHccCccc----CeE
Q 026122          142 -----SFREQYDVAVARA---VAE---MRILAEYCLPLVRV----GGL  174 (243)
Q Consensus       142 -----~~~~~fD~I~~~~---~~~---~~~~l~~~~~~Lkp----gG~  174 (243)
                           ...+++|+|||.-   +.+   -.+.|+.+.+.||+    +|+
T Consensus       783 s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKdiqhsdGI  830 (1072)
T PTZ00357        783 SLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLEDIQLSRGI  830 (1072)
T ss_pred             cccccccccccceehHhhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence                 0113799999942   111   14556667777776    675

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=93.77  E-value=0.24  Score=44.05  Aligned_cols=97  Identities=20%  Similarity=0.153  Sum_probs=56.8

Q ss_pred             CCCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccc----cccCCcCCCCc
Q 026122           73 CNSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAET----LGKDVSFREQY  147 (243)
Q Consensus        73 ~~~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~----~~~~~~~~~~f  147 (243)
                      +.++.+||=.|+| .|..++.+|+.....+|+++|.+++..+.++    ++|...  ++..+-.+    +...  ..+.+
T Consensus       189 i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~----~~Ga~~--~i~~~~~~~~~~i~~~--~~~g~  260 (371)
T cd08281         189 VRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAR----ELGATA--TVNAGDPNAVEQVREL--TGGGV  260 (371)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHH----HcCCce--EeCCCchhHHHHHHHH--hCCCC
Confidence            3457888888875 2444555666653337999999998766664    355432  22211111    1110  01368


Q ss_pred             eEEEEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122          148 DVAVARAVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       148 D~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      |+|+-..-.  ...++.+.+.|+++|+++..-
T Consensus       261 d~vid~~G~--~~~~~~~~~~l~~~G~iv~~G  290 (371)
T cd08281         261 DYAFEMAGS--VPALETAYEITRRGGTTVTAG  290 (371)
T ss_pred             CEEEECCCC--hHHHHHHHHHHhcCCEEEEEc
Confidence            999964321  234566677899999987654

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>KOG2920 consensus Predicted methyltransferase [General function prediction only]

Probab=93.68  E-value=0.057  Score=46.18  Aligned_cols=102  Identities=16%  Similarity=0.223  Sum_probs=56.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHH-------HHHHH--HcCC-CCEEEEEccccccccCCcCC
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFL-------EHAVS--LTQL-LNVQIVRGRAETLGKDVSFR  144 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a-------~~~~~--~~~~-~~v~~~~~d~~~~~~~~~~~  144 (243)
                      .+++|||+|||+|.+++..... ....+...|.|.+.++..       +-.+.  .... .-..+.+....+........
T Consensus       116 ~~k~vLELgCg~~Lp~i~~~~~-~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~~  194 (282)
T KOG2920|consen  116 SGKRVLELGCGAALPGIFAFVK-GAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTER  194 (282)
T ss_pred             cCceeEecCCcccccchhhhhh-ccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhccc
Confidence            4889999999999999777755 347899999987766211       11111  0000 00223333111111110001


Q ss_pred             CCceEEEEcC----cccHHHH-HHHHccCcccCeEEEE
Q 026122          145 EQYDVAVARA----VAEMRIL-AEYCLPLVRVGGLFVA  177 (243)
Q Consensus       145 ~~fD~I~~~~----~~~~~~~-l~~~~~~LkpgG~l~~  177 (243)
                      -.||+|.+..    ......+ ...-..+++++|.++.
T Consensus       195 ~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~  232 (282)
T KOG2920|consen  195 THYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYV  232 (282)
T ss_pred             cchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhh
Confidence            2789988853    2233444 4455667788888664

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=93.66  E-value=0.35  Score=41.93  Aligned_cols=86  Identities=20%  Similarity=0.102  Sum_probs=52.9

Q ss_pred             CCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           76 NLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        76 ~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      +.+||=+||| .|..++.+|+..+...|.++|.+++.++.+...    .     ++  |..+.  .   ...+|+|+-..
T Consensus       145 ~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~-----~i--~~~~~--~---~~g~Dvvid~~  208 (308)
T TIGR01202       145 VLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----E-----VL--DPEKD--P---RRDYRAIYDAS  208 (308)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----c-----cc--Chhhc--c---CCCCCEEEECC
Confidence            6788888876 455566677766544577889988766554321    1     11  11110  1   14699998643


Q ss_pred             cccHHHHHHHHccCcccCeEEEEEe
Q 026122          155 VAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       155 ~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      -.  ...++.+.+.++++|++++.-
T Consensus       209 G~--~~~~~~~~~~l~~~G~iv~~G  231 (308)
T TIGR01202       209 GD--PSLIDTLVRRLAKGGEIVLAG  231 (308)
T ss_pred             CC--HHHHHHHHHhhhcCcEEEEEe
Confidence            22  234566778999999988653

>TIGR00936 ahcY adenosylhomocysteinase

Probab=93.61  E-value=1.8  Score=39.44  Aligned_cols=89  Identities=12%  Similarity=0.104  Sum_probs=52.8

Q ss_pred             CCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122           75 SNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        75 ~~~~VLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      .+++|+=+|+|. |......++.. +++|+.+|.++.....+    ...|.   ++.  +.++..      ...|+|+..
T Consensus       194 ~Gk~VvViG~G~IG~~vA~~ak~~-Ga~ViV~d~dp~r~~~A----~~~G~---~v~--~leeal------~~aDVVIta  257 (406)
T TIGR00936       194 AGKTVVVAGYGWCGKGIAMRARGM-GARVIVTEVDPIRALEA----AMDGF---RVM--TMEEAA------KIGDIFITA  257 (406)
T ss_pred             CcCEEEEECCCHHHHHHHHHHhhC-cCEEEEEeCChhhHHHH----HhcCC---EeC--CHHHHH------hcCCEEEEC
Confidence            388999999985 33333334333 67999999998543222    22333   222  223321      357998874


Q ss_pred             CcccHHHHH-HHHccCcccCeEEEEEeCC
Q 026122          154 AVAEMRILA-EYCLPLVRVGGLFVAAKGH  181 (243)
Q Consensus       154 ~~~~~~~~l-~~~~~~LkpgG~l~~~~~~  181 (243)
                      . .. ..++ ......+|+|++++.....
T Consensus       258 T-G~-~~vI~~~~~~~mK~GailiN~G~~  284 (406)
T TIGR00936       258 T-GN-KDVIRGEHFENMKDGAIVANIGHF  284 (406)
T ss_pred             C-CC-HHHHHHHHHhcCCCCcEEEEECCC
Confidence            3 22 3334 3477899999987765543

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=93.59  E-value=0.057  Score=39.64  Aligned_cols=34  Identities=26%  Similarity=0.494  Sum_probs=27.2

Q ss_pred             CceEEEEcCc----------ccHHHHHHHHccCcccCeEEEEEe
Q 026122          146 QYDVAVARAV----------AEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       146 ~fD~I~~~~~----------~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      +||+|+|-++          ..+..+++.+.+.|+|||.++++-
T Consensus         1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEp   44 (110)
T PF06859_consen    1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEP   44 (110)
T ss_dssp             -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred             CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeC
Confidence            4899999652          347889999999999999998864

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=93.58  E-value=0.18  Score=46.29  Aligned_cols=106  Identities=14%  Similarity=0.100  Sum_probs=71.8

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccc----cccCCcCCCCceE
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAET----LGKDVSFREQYDV  149 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~----~~~~~~~~~~fD~  149 (243)
                      ..+..+|=+|-|.|.+...+....|..++++|++++.+++.++.+.....-....+...|..+    .......+..||+
T Consensus       294 ~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dv  373 (482)
T KOG2352|consen  294 DTGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDV  373 (482)
T ss_pred             cccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcE
Confidence            346789999999999988888888989999999999999999887643321122333333222    2111011257999


Q ss_pred             EEEcCc--------cc-----HHHHHHHHccCcccCeEEEEEe
Q 026122          150 AVARAV--------AE-----MRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       150 I~~~~~--------~~-----~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      ++..-.        ..     -..++..++..|.|-|.+++-.
T Consensus       374 l~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inl  416 (482)
T KOG2352|consen  374 LMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINL  416 (482)
T ss_pred             EEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEE
Confidence            997310        01     3667778899999999987654

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=93.49  E-value=0.24  Score=42.31  Aligned_cols=96  Identities=23%  Similarity=0.197  Sum_probs=55.0

Q ss_pred             CCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEE-ccc-cccccCCcCCCCceEEE
Q 026122           75 SNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVR-GRA-ETLGKDVSFREQYDVAV  151 (243)
Q Consensus        75 ~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~-~d~-~~~~~~~~~~~~fD~I~  151 (243)
                      ++.+||=+|+| .|..++.+|+.....+|+++|.+++..+.+++    +|...  ++. .+. ...... .....+|+|+
T Consensus       120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~~--~i~~~~~~~~~~~~-~~~~g~d~vi  192 (280)
T TIGR03366       120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALS----FGATA--LAEPEVLAERQGGL-QNGRGVDVAL  192 (280)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCcE--ecCchhhHHHHHHH-hCCCCCCEEE
Confidence            47889988875 33344556666543359999999876665544    45431  111 111 111100 0013599998


Q ss_pred             EcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122          152 ARAVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       152 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      -..-.  ...++.+.+.++++|+++..-
T Consensus       193 d~~G~--~~~~~~~~~~l~~~G~iv~~G  218 (280)
T TIGR03366       193 EFSGA--TAAVRACLESLDVGGTAVLAG  218 (280)
T ss_pred             ECCCC--hHHHHHHHHHhcCCCEEEEec
Confidence            64322  334566778899999987654

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=93.35  E-value=0.82  Score=35.84  Aligned_cols=110  Identities=15%  Similarity=0.176  Sum_probs=64.3

Q ss_pred             eEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122           78 KLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-  154 (243)
Q Consensus        78 ~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~-  154 (243)
                      +|-=||+  |..+..+|+..  .+.+|++.|.+++..+.+.+    .+   ++. ..+..++.      ...|+|++.- 
T Consensus         3 ~Ig~IGl--G~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~----~g---~~~-~~s~~e~~------~~~dvvi~~v~   66 (163)
T PF03446_consen    3 KIGFIGL--GNMGSAMARNLAKAGYEVTVYDRSPEKAEALAE----AG---AEV-ADSPAEAA------EQADVVILCVP   66 (163)
T ss_dssp             EEEEE----SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHH----TT---EEE-ESSHHHHH------HHBSEEEE-SS
T ss_pred             EEEEEch--HHHHHHHHHHHHhcCCeEEeeccchhhhhhhHH----hh---hhh-hhhhhhHh------hcccceEeecc
Confidence            3444555  56666666542  46899999999875444332    12   333 33444443      3469998743 


Q ss_pred             -cccHHHHHHH--HccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEE
Q 026122          155 -VAEMRILAEY--CLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQL  204 (243)
Q Consensus       155 -~~~~~~~l~~--~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~  204 (243)
                       ....+.++..  +...|++|.. ++-.+....+...++.+.++..|...++-
T Consensus        67 ~~~~v~~v~~~~~i~~~l~~g~i-iid~sT~~p~~~~~~~~~~~~~g~~~vda  118 (163)
T PF03446_consen   67 DDDAVEAVLFGENILAGLRPGKI-IIDMSTISPETSRELAERLAAKGVRYVDA  118 (163)
T ss_dssp             SHHHHHHHHHCTTHGGGS-TTEE-EEE-SS--HHHHHHHHHHHHHTTEEEEEE
T ss_pred             cchhhhhhhhhhHHhhccccceE-EEecCCcchhhhhhhhhhhhhccceeeee
Confidence             2346777777  7777877755 55555566667777888888888765543

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK10458 DNA cytosine methylase; Provisional

Probab=93.12  E-value=7.3  Score=36.18  Aligned_cols=122  Identities=11%  Similarity=-0.033  Sum_probs=69.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC--------------
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV--------------  141 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~--------------  141 (243)
                      ..+++|+-||.|.+.+.+-.. +.-.|.++|+++.+.+.-+.|..  ...+...+++|+.++....              
T Consensus        88 ~~~~iDLFsGiGGl~lGfe~a-G~~~v~a~Eid~~A~~TY~~N~~--~~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~~  164 (467)
T PRK10458         88 AFRFIDLFAGIGGIRRGFEAI-GGQCVFTSEWNKHAVRTYKANWY--CDPATHRFNEDIRDITLSHKEGVSDEEAAEHIR  164 (467)
T ss_pred             CceEEEeCcCccHHHHHHHHc-CCEEEEEEechHHHHHHHHHHcC--CCCccceeccChhhCccccccccchhhhhhhhh
Confidence            458999999999887666543 23367889999987766655531  1122345566776654210              


Q ss_pred             cCCCCceEEEEcC---------c--------------ccHHHHHHHHc---cCcccCeEEEEEeCC------CcHHHHHH
Q 026122          142 SFREQYDVAVARA---------V--------------AEMRILAEYCL---PLVRVGGLFVAAKGH------DPQEEVKN  189 (243)
Q Consensus       142 ~~~~~fD~I~~~~---------~--------------~~~~~~l~~~~---~~LkpgG~l~~~~~~------~~~~~~~~  189 (243)
                      ..-...|+++...         .              .....++-.+.   +..+|.  ++++++.      ........
T Consensus       165 ~~~p~~DvL~gGpPCQ~FS~AG~~k~~~~gr~~g~~~d~rg~Lf~~~~rii~~~kPk--~fvlENV~gl~s~~~g~~f~~  242 (467)
T PRK10458        165 QHIPDHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFECETQGTLFFDVARIIDAKRPA--IFVLENVKNLKSHDKGKTFRI  242 (467)
T ss_pred             ccCCCCCEEEEcCCCCccchhcccccccccccccccCCccccHHHHHHHHHHHhCCC--EEEEeCcHhhhcccccHHHHH
Confidence            0012579888731         0              01111322222   234564  3444432      22345677


Q ss_pred             HHHHHHHhCCeee
Q 026122          190 SERAVQLMGASLL  202 (243)
Q Consensus       190 ~~~~l~~~g~~~~  202 (243)
                      +++.|+..|+.+.
T Consensus       243 i~~~L~~lGY~v~  255 (467)
T PRK10458        243 IMQTLDELGYDVA  255 (467)
T ss_pred             HHHHHHHcCCeEE
Confidence            8888899999875

>PRK13699 putative methylase; Provisional

Probab=93.11  E-value=0.4  Score=40.02  Aligned_cols=74  Identities=12%  Similarity=0.077  Sum_probs=47.5

Q ss_pred             EEEEccccccccCCcCCCCceEEEEcC---c----------------ccHHHHHHHHccCcccCeEEEEEeCCCcHHHHH
Q 026122          128 QIVRGRAETLGKDVSFREQYDVAVARA---V----------------AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVK  188 (243)
Q Consensus       128 ~~~~~d~~~~~~~~~~~~~fD~I~~~~---~----------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~  188 (243)
                      +++++|..+.-.. ..++++|+|+..-   .                .-...+++++.|+|||||.+++..+....   .
T Consensus         3 ~l~~gD~le~l~~-lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~~~---~   78 (227)
T PRK13699          3 RFILGNCIDVMAR-FPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWNRV---D   78 (227)
T ss_pred             eEEechHHHHHHh-CCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEeccccH---H
Confidence            5677777654211 0126788888741   0                01357888999999999998876654432   3


Q ss_pred             HHHHHHHHhCCeeeEEE
Q 026122          189 NSERAVQLMGASLLQLC  205 (243)
Q Consensus       189 ~~~~~l~~~g~~~~~~~  205 (243)
                      .+...+++.||.+...-
T Consensus        79 ~~~~al~~~GF~l~~~I   95 (227)
T PRK13699         79 RFMAAWKNAGFSVVGHL   95 (227)
T ss_pred             HHHHHHHHCCCEEeeEE
Confidence            34566778999866533

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=93.10  E-value=0.6  Score=40.66  Aligned_cols=93  Identities=16%  Similarity=0.168  Sum_probs=57.1

Q ss_pred             CCCeEEEEcCCC-ChHHHHHHHHCCCC-EEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcc---ccccccCCcCCCCceE
Q 026122           75 SNLKLVDVGTGA-GLPGLVLAIACPDW-KVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGR---AETLGKDVSFREQYDV  149 (243)
Q Consensus        75 ~~~~VLDiGcG~-G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d---~~~~~~~~~~~~~fD~  149 (243)
                      ++.+||-.|||. |..++.+|+.. +. +|++++.+++..+.+++    .+.+  .++..+   ..+....   ...+|+
T Consensus       165 ~~~~VLI~g~g~vG~~~~~lak~~-G~~~v~~~~~s~~~~~~~~~----~g~~--~vi~~~~~~~~~~~~~---~~~vd~  234 (339)
T cd08232         165 AGKRVLVTGAGPIGALVVAAARRA-GAAEIVATDLADAPLAVARA----MGAD--ETVNLARDPLAAYAAD---KGDFDV  234 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHH----cCCC--EEEcCCchhhhhhhcc---CCCccE
Confidence            478899888764 55666677665 45 89999999876664433    3432  122211   1111111   145999


Q ss_pred             EEEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122          150 AVARAVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       150 I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      ++.....  ...++.+.+.|+++|+++...
T Consensus       235 vld~~g~--~~~~~~~~~~L~~~G~~v~~g  262 (339)
T cd08232         235 VFEASGA--PAALASALRVVRPGGTVVQVG  262 (339)
T ss_pred             EEECCCC--HHHHHHHHHHHhcCCEEEEEe
Confidence            9975322  234667788999999987653

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=92.96  E-value=1.2  Score=32.41  Aligned_cols=90  Identities=17%  Similarity=0.084  Sum_probs=53.5

Q ss_pred             CCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCc-CCCCceEEEEcCccc-HH
Q 026122           84 TGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-FREQYDVAVARAVAE-MR  159 (243)
Q Consensus        84 cG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~-~~~~fD~I~~~~~~~-~~  159 (243)
                      ||.|..+..+++..  .+.+|+.+|.+++.++.++.    .   .+.++.+|..+...... .-++.|.+++....+ ..
T Consensus         4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~----~---~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n   76 (116)
T PF02254_consen    4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE----E---GVEVIYGDATDPEVLERAGIEKADAVVILTDDDEEN   76 (116)
T ss_dssp             ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH----T---TSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHH
T ss_pred             EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh----c---ccccccccchhhhHHhhcCccccCEEEEccCCHHHH
Confidence            67777877777643  33589999999986555543    2   26799999887432110 015788888754332 22


Q ss_pred             HHHHHHccCcccCeEEEEEeC
Q 026122          160 ILAEYCLPLVRVGGLFVAAKG  180 (243)
Q Consensus       160 ~~l~~~~~~LkpgG~l~~~~~  180 (243)
                      ..+....+.+.|...+++...
T Consensus        77 ~~~~~~~r~~~~~~~ii~~~~   97 (116)
T PF02254_consen   77 LLIALLARELNPDIRIIARVN   97 (116)
T ss_dssp             HHHHHHHHHHTTTSEEEEEES
T ss_pred             HHHHHHHHHHCCCCeEEEEEC
Confidence            233334455667777776554

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=92.87  E-value=2.8  Score=35.58  Aligned_cols=104  Identities=17%  Similarity=0.165  Sum_probs=59.7

Q ss_pred             HHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc-CcccHHHHHHHHccC
Q 026122           90 GLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR-AVAEMRILAEYCLPL  168 (243)
Q Consensus        90 ~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~-~~~~~~~~l~~~~~~  168 (243)
                      +..|.+..+..+|+|+|.++..++.+    .+.|...  -...+.+.+       ..+|+|+.. .......+++++.+.
T Consensus         2 A~aL~~~g~~~~v~g~d~~~~~~~~a----~~~g~~~--~~~~~~~~~-------~~~DlvvlavP~~~~~~~l~~~~~~   68 (258)
T PF02153_consen    2 ALALRKAGPDVEVYGYDRDPETLEAA----LELGIID--EASTDIEAV-------EDADLVVLAVPVSAIEDVLEEIAPY   68 (258)
T ss_dssp             HHHHHHTTTTSEEEEE-SSHHHHHHH----HHTTSSS--EEESHHHHG-------GCCSEEEE-S-HHHHHHHHHHHHCG
T ss_pred             hHHHHhCCCCeEEEEEeCCHHHHHHH----HHCCCee--eccCCHhHh-------cCCCEEEEcCCHHHHHHHHHHhhhh
Confidence            45666666679999999999754443    3455532  111222222       457988864 355789999999999


Q ss_pred             cccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEEEe
Q 026122          169 VRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVE  208 (243)
Q Consensus       169 LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~  208 (243)
                      +++|+.+.=..+. ....+..+.+.+. .+...+....+.
T Consensus        69 ~~~~~iv~Dv~Sv-K~~~~~~~~~~~~-~~~~~v~~HPM~  106 (258)
T PF02153_consen   69 LKPGAIVTDVGSV-KAPIVEAMERLLP-EGVRFVGGHPMA  106 (258)
T ss_dssp             S-TTSEEEE--S--CHHHHHHHHHHHT-SSGEEEEEEESC
T ss_pred             cCCCcEEEEeCCC-CHHHHHHHHHhcC-cccceeecCCCC
Confidence            9999775544443 3333444444333 455666666544

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=92.69  E-value=0.44  Score=44.58  Aligned_cols=93  Identities=13%  Similarity=0.183  Sum_probs=56.0

Q ss_pred             CCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccc-----------ccc----
Q 026122           76 NLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAET-----------LGK----  139 (243)
Q Consensus        76 ~~~VLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-----------~~~----  139 (243)
                      +.+|+=+|||. |..++..++.. ++.|+.+|.+++..+.++    .+|..   ++.-|..+           +..    
T Consensus       164 ~akVlViGaG~iGl~Aa~~ak~l-GA~V~v~d~~~~rle~a~----~lGa~---~v~v~~~e~g~~~~gYa~~~s~~~~~  235 (511)
T TIGR00561       164 PAKVLVIGAGVAGLAAIGAANSL-GAIVRAFDTRPEVKEQVQ----SMGAE---FLELDFKEEGGSGDGYAKVMSEEFIA  235 (511)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHH----HcCCe---EEeccccccccccccceeecCHHHHH
Confidence            68999999984 56666666665 578999999998655444    34442   22222111           000    


Q ss_pred             -----CCcCCCCceEEEEcCc----ccHHHHHHHHccCcccCeEEE
Q 026122          140 -----DVSFREQYDVAVARAV----AEMRILAEYCLPLVRVGGLFV  176 (243)
Q Consensus       140 -----~~~~~~~fD~I~~~~~----~~~~~~l~~~~~~LkpgG~l~  176 (243)
                           ..+.-..+|+|+....    ..+.-+.+++.+.+|||+.++
T Consensus       236 ~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIV  281 (511)
T TIGR00561       236 AEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIV  281 (511)
T ss_pred             HHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEE
Confidence                 0000146999987651    122335667778888888866

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PLN02740 Alcohol dehydrogenase-like

Probab=92.65  E-value=0.59  Score=41.84  Aligned_cols=97  Identities=13%  Similarity=0.034  Sum_probs=56.4

Q ss_pred             CCCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcc-----ccc-cccCCcCCC
Q 026122           73 CNSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGR-----AET-LGKDVSFRE  145 (243)
Q Consensus        73 ~~~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d-----~~~-~~~~~~~~~  145 (243)
                      +.++.+||=+||| .|..++.+|+..+..+|+++|.+++.++.+++    +|.+.  ++..+     ..+ +...  ..+
T Consensus       196 ~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~~--~i~~~~~~~~~~~~v~~~--~~~  267 (381)
T PLN02740        196 VQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE----MGITD--FINPKDSDKPVHERIREM--TGG  267 (381)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH----cCCcE--EEecccccchHHHHHHHH--hCC
Confidence            4568899999875 23344556666543379999999987666643    55432  22211     111 1110  013


Q ss_pred             CceEEEEcCcccHHHHHHHHccCcccC-eEEEEEe
Q 026122          146 QYDVAVARAVAEMRILAEYCLPLVRVG-GLFVAAK  179 (243)
Q Consensus       146 ~fD~I~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~  179 (243)
                      .+|+|+-..-.  ...++.+...+++| |++++.-
T Consensus       268 g~dvvid~~G~--~~~~~~a~~~~~~g~G~~v~~G  300 (381)
T PLN02740        268 GVDYSFECAGN--VEVLREAFLSTHDGWGLTVLLG  300 (381)
T ss_pred             CCCEEEECCCC--hHHHHHHHHhhhcCCCEEEEEc
Confidence            69999864332  23455666678886 8876643

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=92.58  E-value=0.39  Score=36.83  Aligned_cols=89  Identities=17%  Similarity=0.175  Sum_probs=53.3

Q ss_pred             CCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcc-------ccccccCCcCCCCceEEEEcC-
Q 026122           85 GAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGR-------AETLGKDVSFREQYDVAVARA-  154 (243)
Q Consensus        85 G~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d-------~~~~~~~~~~~~~fD~I~~~~-  154 (243)
                      |.|.++..+|...  .+.+|+.++.++ .++.    .++.++   ++...+       .............+|+|+... 
T Consensus         5 G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~----~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vK   76 (151)
T PF02558_consen    5 GAGAIGSLYAARLAQAGHDVTLVSRSP-RLEA----IKEQGL---TITGPDGDETVQPPIVISAPSADAGPYDLVIVAVK   76 (151)
T ss_dssp             STSHHHHHHHHHHHHTTCEEEEEESHH-HHHH----HHHHCE---EEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SS
T ss_pred             CcCHHHHHHHHHHHHCCCceEEEEccc-cHHh----hhheeE---EEEecccceecccccccCcchhccCCCcEEEEEec
Confidence            5556666666543  578999999987 4443    222232   222111       000100000126799999765 


Q ss_pred             cccHHHHHHHHccCcccCeEEEEEeCC
Q 026122          155 VAEMRILAEYCLPLVRVGGLFVAAKGH  181 (243)
Q Consensus       155 ~~~~~~~l~~~~~~LkpgG~l~~~~~~  181 (243)
                      ..+.+..++.+.+.+.++..+++..+.
T Consensus        77 a~~~~~~l~~l~~~~~~~t~iv~~qNG  103 (151)
T PF02558_consen   77 AYQLEQALQSLKPYLDPNTTIVSLQNG  103 (151)
T ss_dssp             GGGHHHHHHHHCTGEETTEEEEEESSS
T ss_pred             ccchHHHHHHHhhccCCCcEEEEEeCC
Confidence            446788999999999999888877643

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=92.46  E-value=0.33  Score=41.00  Aligned_cols=46  Identities=15%  Similarity=0.128  Sum_probs=32.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCC--------CCEEEEEeCCHHHHHHHHHHHHH
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACP--------DWKVTLLESMNKRCVFLEHAVSL  121 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~--------~~~v~~vD~s~~~~~~a~~~~~~  121 (243)
                      .-+|+|+|+|+|.++..+.....        ..+++.||+|+.+.+.-++....
T Consensus        19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~   72 (252)
T PF02636_consen   19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE   72 (252)
T ss_dssp             -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred             CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence            36999999999999877665422        36899999999877666655543

; PDB: 4F3N_A 1ZKD_B.

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=92.45  E-value=0.35  Score=42.60  Aligned_cols=100  Identities=14%  Similarity=0.067  Sum_probs=55.9

Q ss_pred             CCCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccccc---cCCcCCCCc
Q 026122           73 CNSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLG---KDVSFREQY  147 (243)
Q Consensus        73 ~~~~~~VLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~---~~~~~~~~f  147 (243)
                      ++++.+||=.|||+ |..++.+|+.. +.+|+++|.+++.++.+++    +|... +.....+..++.   ........+
T Consensus       164 ~~~g~~VlV~G~G~vG~~a~~~a~~~-G~~vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~  238 (349)
T TIGR03201       164 LKKGDLVIVIGAGGVGGYMVQTAKAM-GAAVVAIDIDPEKLEMMKG----FGADLTLNPKDKSAREVKKLIKAFAKARGL  238 (349)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHH----hCCceEecCccccHHHHHHHHHhhcccCCC
Confidence            34588999999864 55566677765 4689999999987666543    45432 111111111110   000001235


Q ss_pred             e----EEEEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122          148 D----VAVARAVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       148 D----~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      |    +|+-.. .. ...++.+.+.|++||++++.-
T Consensus       239 d~~~d~v~d~~-g~-~~~~~~~~~~l~~~G~iv~~G  272 (349)
T TIGR03201       239 RSTGWKIFECS-GS-KPGQESALSLLSHGGTLVVVG  272 (349)
T ss_pred             CCCcCEEEECC-CC-hHHHHHHHHHHhcCCeEEEEC
Confidence            4    555322 22 235556677899999987654

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function

Probab=92.44  E-value=0.4  Score=37.01  Aligned_cols=53  Identities=19%  Similarity=0.187  Sum_probs=30.8

Q ss_pred             EEcCCCC--hHHHHHH--HHCCCCEEEEEeCCHHHHHHHHHH--HHHcCCC-CEEEEEcc
Q 026122           81 DVGTGAG--LPGLVLA--IACPDWKVTLLESMNKRCVFLEHA--VSLTQLL-NVQIVRGR  133 (243)
Q Consensus        81 DiGcG~G--~~~~~la--~~~~~~~v~~vD~s~~~~~~a~~~--~~~~~~~-~v~~~~~d  133 (243)
                      |||+..|  .....+.  ...++.+|+++|+++...+..+++  +..++.. .+++....
T Consensus         1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~~   60 (167)
T PF05050_consen    1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPYA   60 (167)
T ss_dssp             EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE-
T ss_pred             CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEee
Confidence            8999999  4433332  345788999999999999988888  5544332 25555433

; PDB: 2PY6_A.

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=92.43  E-value=0.63  Score=40.57  Aligned_cols=99  Identities=14%  Similarity=0.122  Sum_probs=56.4

Q ss_pred             CCCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccc-cccCCcCCCCceE
Q 026122           73 CNSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAET-LGKDVSFREQYDV  149 (243)
Q Consensus        73 ~~~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~-~~~~~~~~~~fD~  149 (243)
                      ++++.+||-.|+| .|..++.+|+..+...|++++.++...+.+++    ++... +.....+..+ +... ...+.+|+
T Consensus       165 ~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~i~~~-~~~~~~d~  239 (347)
T cd05278         165 IKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKE----AGATDIINPKNGDIVEQILEL-TGGRGVDC  239 (347)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH----hCCcEEEcCCcchHHHHHHHH-cCCCCCcE
Confidence            4557888887765 35566677776643489999888876555443    34221 1111111111 1100 00146999


Q ss_pred             EEEcCcccHHHHHHHHccCcccCeEEEEE
Q 026122          150 AVARAVAEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       150 I~~~~~~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                      ++.....  ...+..+.+.|+++|+++..
T Consensus       240 vld~~g~--~~~~~~~~~~l~~~G~~v~~  266 (347)
T cd05278         240 VIEAVGF--EETFEQAVKVVRPGGTIANV  266 (347)
T ss_pred             EEEccCC--HHHHHHHHHHhhcCCEEEEE
Confidence            9864222  24667777889999997754

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=92.40  E-value=0.6  Score=40.75  Aligned_cols=98  Identities=20%  Similarity=0.144  Sum_probs=54.5

Q ss_pred             CCCCeEEEEcCC-CChHHHHHHHHCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCCE-EEEEccccccccCCcCCCCceEE
Q 026122           74 NSNLKLVDVGTG-AGLPGLVLAIACPDWK-VTLLESMNKRCVFLEHAVSLTQLLNV-QIVRGRAETLGKDVSFREQYDVA  150 (243)
Q Consensus        74 ~~~~~VLDiGcG-~G~~~~~la~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~d~~~~~~~~~~~~~fD~I  150 (243)
                      .++.+||=+|+| .|..++.+|+.. +++ |+++|.+++..+.++    ++|...+ .....+...+... .....+|+|
T Consensus       162 ~~g~~vlV~G~G~vG~~~~~~ak~~-G~~~vi~~~~~~~~~~~~~----~~ga~~~i~~~~~~~~~~~~~-~~~~~~d~v  235 (339)
T cd08239         162 SGRDTVLVVGAGPVGLGALMLARAL-GAEDVIGVDPSPERLELAK----ALGADFVINSGQDDVQEIREL-TSGAGADVA  235 (339)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHH----HhCCCEEEcCCcchHHHHHHH-hCCCCCCEE
Confidence            447888888764 233345556555 455 999999987665553    3454321 1111111111110 001369999


Q ss_pred             EEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122          151 VARAVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       151 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      +-....  ...+..+.+.|+++|++++..
T Consensus       236 id~~g~--~~~~~~~~~~l~~~G~~v~~g  262 (339)
T cd08239         236 IECSGN--TAARRLALEAVRPWGRLVLVG  262 (339)
T ss_pred             EECCCC--HHHHHHHHHHhhcCCEEEEEc
Confidence            964322  234456667899999987654

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>KOG2912 consensus Predicted DNA methylase [Function unknown]

Probab=92.34  E-value=0.17  Score=44.18  Aligned_cols=74  Identities=18%  Similarity=0.236  Sum_probs=49.9

Q ss_pred             EEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccccccCCcC----CCCceEEEEc
Q 026122           80 VDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSF----REQYDVAVAR  153 (243)
Q Consensus        80 LDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~----~~~fD~I~~~  153 (243)
                      +|||+|+-.+--.+.....++...++|++...+..|..+..++++.. +.+++.........+..    +..||++.||
T Consensus       107 iDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMcN  185 (419)
T KOG2912|consen  107 IDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMCN  185 (419)
T ss_pred             eeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEecC
Confidence            79999987653233222235899999999999999999999998864 66666543322111111    1349999986

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=92.26  E-value=0.71  Score=40.56  Aligned_cols=98  Identities=15%  Similarity=0.087  Sum_probs=57.6

Q ss_pred             CCCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccc----cccCCcCCCCc
Q 026122           73 CNSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAET----LGKDVSFREQY  147 (243)
Q Consensus        73 ~~~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~----~~~~~~~~~~f  147 (243)
                      ++++.+||=.|+| .|..++.+|+..+...|+++|.+++..+.++    .+|...  ++..+-.+    +... .....+
T Consensus       164 ~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~----~~g~~~--~v~~~~~~~~~~i~~~-~~~~~~  236 (351)
T cd08285         164 IKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAK----EYGATD--IVDYKNGDVVEQILKL-TGGKGV  236 (351)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH----HcCCce--EecCCCCCHHHHHHHH-hCCCCC
Confidence            3457888888865 3444556666664447999999987665554    355432  22111111    1000 001459


Q ss_pred             eEEEEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122          148 DVAVARAVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       148 D~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      |+++.....  ...+..+.+.|+++|+++...
T Consensus       237 d~vld~~g~--~~~~~~~~~~l~~~G~~v~~g  266 (351)
T cd08285         237 DAVIIAGGG--QDTFEQALKVLKPGGTISNVN  266 (351)
T ss_pred             cEEEECCCC--HHHHHHHHHHhhcCCEEEEec
Confidence            999864332  245677788899999977543

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=92.13  E-value=3.2  Score=33.91  Aligned_cols=101  Identities=15%  Similarity=0.111  Sum_probs=60.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccC-------CcCCCC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD-------VSFREQ  146 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-------~~~~~~  146 (243)
                      +++|+=.|++ |.++..+++.+  .+.+|++++.+++....+.+.....  .++.++.+|+.+....       ....+.
T Consensus         5 ~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   81 (238)
T PRK05786          5 GKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY--GNIHYVVGDVSSTESARNVIEKAAKVLNA   81 (238)
T ss_pred             CcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence            6789999986 44555565543  4679999999987665543333322  2578888888763211       000135


Q ss_pred             ceEEEEcCcc-------c--------------HHHHHHHHccCcccCeEEEEEe
Q 026122          147 YDVAVARAVA-------E--------------MRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       147 fD~I~~~~~~-------~--------------~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      .|.++.++..       +              ...+++.+.+.++++|.+++..
T Consensus        82 id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s  135 (238)
T PRK05786         82 IDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVS  135 (238)
T ss_pred             CCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEe
Confidence            6888865411       0              1223455556667788877665

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=91.63  E-value=0.78  Score=41.40  Aligned_cols=72  Identities=21%  Similarity=0.356  Sum_probs=45.7

Q ss_pred             CeEEEEcCCCChHHHHHHH---HCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122           77 LKLVDVGTGAGLPGLVLAI---ACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        77 ~~VLDiGcG~G~~~~~la~---~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      .+||=||||  .++...|.   +..+.+|+..|.|.+.++.+.....    .+++..+.|+.+.+.....-..+|+|++-
T Consensus         2 ~~ilviGaG--~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~----~~v~~~~vD~~d~~al~~li~~~d~VIn~   75 (389)
T COG1748           2 MKILVIGAG--GVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG----GKVEALQVDAADVDALVALIKDFDLVINA   75 (389)
T ss_pred             CcEEEECCc--hhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc----ccceeEEecccChHHHHHHHhcCCEEEEe
Confidence            478999995  44434433   2344799999999876555444322    25888888888764321112467999985


Q ss_pred             C
Q 026122          154 A  154 (243)
Q Consensus       154 ~  154 (243)
                      .
T Consensus        76 ~   76 (389)
T COG1748          76 A   76 (389)
T ss_pred             C
Confidence            3

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=91.55  E-value=1  Score=39.75  Aligned_cols=97  Identities=11%  Similarity=0.033  Sum_probs=59.7

Q ss_pred             CCCCCeEEEEcC--CCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCE-EEEEc-cccc-cccCCcCCCCc
Q 026122           73 CNSNLKLVDVGT--GAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNV-QIVRG-RAET-LGKDVSFREQY  147 (243)
Q Consensus        73 ~~~~~~VLDiGc--G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~-d~~~-~~~~~~~~~~f  147 (243)
                      +.++.+||=.|+  |.|..++.+|+.. +++|++++.+++..+.+++   .+|...+ ..... +..+ +...  ..+.+
T Consensus       156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~-G~~Vi~~~~~~~k~~~~~~---~lGa~~vi~~~~~~~~~~~i~~~--~~~gv  229 (348)
T PLN03154        156 PKKGDSVFVSAASGAVGQLVGQLAKLH-GCYVVGSAGSSQKVDLLKN---KLGFDEAFNYKEEPDLDAALKRY--FPEGI  229 (348)
T ss_pred             CCCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHH---hcCCCEEEECCCcccHHHHHHHH--CCCCc
Confidence            355889999987  3666777788775 5789999999876555432   3555321 11111 2211 1110  01468


Q ss_pred             eEEEEcCcccHHHHHHHHccCcccCeEEEEE
Q 026122          148 DVAVARAVAEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       148 D~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                      |+|+-..-   ...+..+.+.|++||+++..
T Consensus       230 D~v~d~vG---~~~~~~~~~~l~~~G~iv~~  257 (348)
T PLN03154        230 DIYFDNVG---GDMLDAALLNMKIHGRIAVC  257 (348)
T ss_pred             EEEEECCC---HHHHHHHHHHhccCCEEEEE
Confidence            99986432   23567778899999998754

>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=91.49  E-value=0.69  Score=39.44  Aligned_cols=88  Identities=17%  Similarity=0.112  Sum_probs=64.8

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEE
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      +.++....|+|+-+|..+..|-++  +..|++||--+-    + +..-..|  .|+....|...+.+.   ....|-.+|
T Consensus       209 L~~~M~avDLGAcPGGWTyqLVkr--~m~V~aVDng~m----a-~sL~dtg--~v~h~r~DGfk~~P~---r~~idWmVC  276 (358)
T COG2933         209 LAPGMWAVDLGACPGGWTYQLVKR--NMRVYAVDNGPM----A-QSLMDTG--QVTHLREDGFKFRPT---RSNIDWMVC  276 (358)
T ss_pred             hcCCceeeecccCCCccchhhhhc--ceEEEEeccchh----h-hhhhccc--ceeeeeccCcccccC---CCCCceEEe
Confidence            456899999999999998777755  689999998652    2 2222222  478888888777653   267999999


Q ss_pred             cCcccHHHHHHHHccCcccC
Q 026122          153 RAVAEMRILAEYCLPLVRVG  172 (243)
Q Consensus       153 ~~~~~~~~~l~~~~~~Lkpg  172 (243)
                      ..+..+..+-..+..+|..|
T Consensus       277 DmVEkP~rv~~li~~Wl~nG  296 (358)
T COG2933         277 DMVEKPARVAALIAKWLVNG  296 (358)
T ss_pred             ehhcCcHHHHHHHHHHHHcc
Confidence            88877777777777777654

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=91.49  E-value=0.6  Score=40.99  Aligned_cols=99  Identities=11%  Similarity=0.131  Sum_probs=54.0

Q ss_pred             CCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCE-EEEEccccccccCCcCCCCce-EE
Q 026122           74 NSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNV-QIVRGRAETLGKDVSFREQYD-VA  150 (243)
Q Consensus        74 ~~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~d~~~~~~~~~~~~~fD-~I  150 (243)
                      .++.+||=.||| .|..++.+|+......|+++|.+++..+.++    ..|...+ .....+..++.... ....+| +|
T Consensus       159 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~----~~Ga~~~i~~~~~~~~~~~~~~-~~~~~d~~v  233 (347)
T PRK10309        159 CEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAK----SLGAMQTFNSREMSAPQIQSVL-RELRFDQLI  233 (347)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH----HcCCceEecCcccCHHHHHHHh-cCCCCCeEE
Confidence            347889888875 2334455666654334899999998666553    3454211 11111111111100 013577 55


Q ss_pred             EEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122          151 VARAVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       151 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      +- +... ...+..+.+.|++||++++.-
T Consensus       234 ~d-~~G~-~~~~~~~~~~l~~~G~iv~~G  260 (347)
T PRK10309        234 LE-TAGV-PQTVELAIEIAGPRAQLALVG  260 (347)
T ss_pred             EE-CCCC-HHHHHHHHHHhhcCCEEEEEc
Confidence            53 3222 345666778899999987653

>PLN02827 Alcohol dehydrogenase-like

Probab=91.37  E-value=1  Score=40.27  Aligned_cols=97  Identities=13%  Similarity=0.041  Sum_probs=54.8

Q ss_pred             CCCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEc-----cccc-cccCCcCCC
Q 026122           73 CNSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRG-----RAET-LGKDVSFRE  145 (243)
Q Consensus        73 ~~~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~-----d~~~-~~~~~~~~~  145 (243)
                      +.++.+||=.|+| -|..++.+|+......|+++|.+++..+.+    +.+|...  ++..     +..+ +...  ..+
T Consensus       191 ~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a----~~lGa~~--~i~~~~~~~~~~~~v~~~--~~~  262 (378)
T PLN02827        191 VSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKA----KTFGVTD--FINPNDLSEPIQQVIKRM--TGG  262 (378)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHH----HHcCCcE--EEcccccchHHHHHHHHH--hCC
Confidence            4558899999874 233344556565434699999998766655    3455532  2211     1111 1100  013


Q ss_pred             CceEEEEcCcccHHHHHHHHccCcccC-eEEEEEe
Q 026122          146 QYDVAVARAVAEMRILAEYCLPLVRVG-GLFVAAK  179 (243)
Q Consensus       146 ~fD~I~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~  179 (243)
                      .+|+|+-..-.  ...+..+.+.+++| |++++.-
T Consensus       263 g~d~vid~~G~--~~~~~~~l~~l~~g~G~iv~~G  295 (378)
T PLN02827        263 GADYSFECVGD--TGIATTALQSCSDGWGLTVTLG  295 (378)
T ss_pred             CCCEEEECCCC--hHHHHHHHHhhccCCCEEEEEC
Confidence            68999864322  22345566788898 9987643

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=91.34  E-value=0.69  Score=40.53  Aligned_cols=99  Identities=20%  Similarity=0.126  Sum_probs=59.1

Q ss_pred             CCCCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEE-EccccccccCCcCCCCce
Q 026122           72 SCNSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIV-RGRAETLGKDVSFREQYD  148 (243)
Q Consensus        72 ~~~~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~-~~d~~~~~~~~~~~~~fD  148 (243)
                      .+.+|.+|-=+|.| -|.+++.+|++. +.+|+++|.+...   -++.++.+|-+. +... ..|+-+-... ..+.-.|
T Consensus       178 g~~pG~~vgI~GlGGLGh~aVq~AKAM-G~rV~vis~~~~k---keea~~~LGAd~fv~~~~d~d~~~~~~~-~~dg~~~  252 (360)
T KOG0023|consen  178 GLGPGKWVGIVGLGGLGHMAVQYAKAM-GMRVTVISTSSKK---KEEAIKSLGADVFVDSTEDPDIMKAIMK-TTDGGID  252 (360)
T ss_pred             CCCCCcEEEEecCcccchHHHHHHHHh-CcEEEEEeCCchh---HHHHHHhcCcceeEEecCCHHHHHHHHH-hhcCcce
Confidence            34578888777765 788899999887 6899999999632   455667777653 2222 2222111100 1112344


Q ss_pred             EEEEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122          149 VAVARAVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       149 ~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      .|.+-+...+    +.+.++||++|.++++-
T Consensus       253 ~v~~~a~~~~----~~~~~~lk~~Gt~V~vg  279 (360)
T KOG0023|consen  253 TVSNLAEHAL----EPLLGLLKVNGTLVLVG  279 (360)
T ss_pred             eeeeccccch----HHHHHHhhcCCEEEEEe
Confidence            4443333334    44556899999988754

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=91.26  E-value=1.8  Score=36.41  Aligned_cols=92  Identities=22%  Similarity=0.104  Sum_probs=55.8

Q ss_pred             CCCCeEEEEcCCC-ChHHHHHHHHCCCCE-EEEEeCCHHHHHHHHHHHHHcCC-CCEEEEEccccccccCCcCCCCceEE
Q 026122           74 NSNLKLVDVGTGA-GLPGLVLAIACPDWK-VTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVA  150 (243)
Q Consensus        74 ~~~~~VLDiGcG~-G~~~~~la~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~fD~I  150 (243)
                      .++.+||=.|||. |..++.+|+..+ .+ |++++.+++..+.+++    .|. ..+.....   ... .   ...+|+|
T Consensus        96 ~~g~~vlI~g~g~vg~~~i~~a~~~g-~~~vi~~~~~~~~~~~~~~----~g~~~~~~~~~~---~~~-~---~~~~d~v  163 (277)
T cd08255          96 RLGERVAVVGLGLVGLLAAQLAKAAG-AREVVGVDPDAARRELAEA----LGPADPVAADTA---DEI-G---GRGADVV  163 (277)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcC-CCcEEEECCCHHHHHHHHH----cCCCccccccch---hhh-c---CCCCCEE
Confidence            4478888888764 555566676654 56 9999999887665543    331 11111000   110 1   1469999


Q ss_pred             EEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122          151 VARAVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       151 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      +.....  ...+....+.|+++|.++...
T Consensus       164 l~~~~~--~~~~~~~~~~l~~~g~~~~~g  190 (277)
T cd08255         164 IEASGS--PSALETALRLLRDRGRVVLVG  190 (277)
T ss_pred             EEccCC--hHHHHHHHHHhcCCcEEEEEe
Confidence            864322  235567778899999987654

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=91.17  E-value=1  Score=39.22  Aligned_cols=98  Identities=20%  Similarity=0.197  Sum_probs=58.1

Q ss_pred             CCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccc-cccCCcCCCCceEE
Q 026122           74 NSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAET-LGKDVSFREQYDVA  150 (243)
Q Consensus        74 ~~~~~VLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~-~~~~~~~~~~fD~I  150 (243)
                      .++.+||-.|+|. |..++.+|+.. +.+|+++..+++..+.+++    .+... +.....+..+ +... .....+|++
T Consensus       158 ~~g~~vLI~g~g~vG~~a~~lA~~~-g~~v~~~~~s~~~~~~~~~----~g~~~v~~~~~~~~~~~l~~~-~~~~~vd~v  231 (337)
T cd08261         158 TAGDTVLVVGAGPIGLGVIQVAKAR-GARVIVVDIDDERLEFARE----LGADDTINVGDEDVAARLREL-TDGEGADVV  231 (337)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEECCCHHHHHHHHH----hCCCEEecCcccCHHHHHHHH-hCCCCCCEE
Confidence            4478999998763 55666777765 6899999888876665533    34322 1111111111 1100 001459999


Q ss_pred             EEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122          151 VARAVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       151 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      +.....  ...+..+.+.|+++|.++...
T Consensus       232 ld~~g~--~~~~~~~~~~l~~~G~~i~~g  258 (337)
T cd08261         232 IDATGN--PASMEEAVELVAHGGRVVLVG  258 (337)
T ss_pred             EECCCC--HHHHHHHHHHHhcCCEEEEEc
Confidence            975322  345667788899999977543

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=91.10  E-value=8.3  Score=32.80  Aligned_cols=101  Identities=17%  Similarity=0.150  Sum_probs=65.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCC----CEEEEEeCCHHHHHHHHHHH-HHc-CCCCEEEEEccccccccCCcCCCCceE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPD----WKVTLLESMNKRCVFLEHAV-SLT-QLLNVQIVRGRAETLGKDVSFREQYDV  149 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~----~~v~~vD~s~~~~~~a~~~~-~~~-~~~~v~~~~~d~~~~~~~~~~~~~fD~  149 (243)
                      +++.+|+|+|+-.-+..+...+..    .+.+.||+|...++...+.+ +.+ ++ .+.-+++|.+..-.... ..+--+
T Consensus        79 ~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l-~v~~l~~~~~~~La~~~-~~~~Rl  156 (321)
T COG4301          79 ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGL-EVNALCGDYELALAELP-RGGRRL  156 (321)
T ss_pred             cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCC-eEeehhhhHHHHHhccc-CCCeEE
Confidence            789999999999877666554432    68999999998776444433 333 33 37777888765322211 122222


Q ss_pred             EEE-c-C-----cccHHHHHHHHccCcccCeEEEEE
Q 026122          150 AVA-R-A-----VAEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       150 I~~-~-~-----~~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                      ++. . .     ..+...++..+...++||-.+++-
T Consensus       157 ~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlG  192 (321)
T COG4301         157 FVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLG  192 (321)
T ss_pred             EEEecccccCCChHHHHHHHHHHHhcCCCcceEEEe
Confidence            222 1 1     235688999999999999998763

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=91.05  E-value=1.4  Score=39.15  Aligned_cols=46  Identities=20%  Similarity=0.266  Sum_probs=34.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHH----CC----CCEEEEEeCCHHHHHHHHHHHHH
Q 026122           76 NLKLVDVGTGAGLPGLVLAIA----CP----DWKVTLLESMNKRCVFLEHAVSL  121 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~----~~----~~~v~~vD~s~~~~~~a~~~~~~  121 (243)
                      .-.++++|.|+|.++..+.+.    .|    ..++..||+|++..+.=+++.+.
T Consensus        78 ~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~  131 (370)
T COG1565          78 PLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKA  131 (370)
T ss_pred             CceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhc
Confidence            458999999999987655542    23    68999999999876655555543

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=91.01  E-value=1.4  Score=38.13  Aligned_cols=98  Identities=10%  Similarity=0.013  Sum_probs=59.1

Q ss_pred             CCCCCeEEEEcC--CCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCE-EEEE-ccccccccCCcCCCCce
Q 026122           73 CNSNLKLVDVGT--GAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNV-QIVR-GRAETLGKDVSFREQYD  148 (243)
Q Consensus        73 ~~~~~~VLDiGc--G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~-~d~~~~~~~~~~~~~fD  148 (243)
                      +.++.+||=.|.  |.|..++.+|+.. +.+|++++.+++..+.++    .+|.+.+ .... .+..+.... ...+.+|
T Consensus       136 ~~~g~~VLI~ga~g~vG~~aiqlAk~~-G~~Vi~~~~s~~~~~~~~----~lGa~~vi~~~~~~~~~~~~~~-~~~~gvd  209 (325)
T TIGR02825       136 VKGGETVMVNAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKVAYLK----KLGFDVAFNYKTVKSLEETLKK-ASPDGYD  209 (325)
T ss_pred             CCCCCEEEEeCCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHH----HcCCCEEEeccccccHHHHHHH-hCCCCeE
Confidence            345889988884  4666777778775 578999999987655553    4565321 1111 111111100 0014699


Q ss_pred             EEEEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122          149 VAVARAVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       149 ~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      +|+-..-.   ..+..+.+.|+++|+++...
T Consensus       210 vv~d~~G~---~~~~~~~~~l~~~G~iv~~G  237 (325)
T TIGR02825       210 CYFDNVGG---EFSNTVIGQMKKFGRIAICG  237 (325)
T ss_pred             EEEECCCH---HHHHHHHHHhCcCcEEEEec
Confidence            99864322   23467788999999988653

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=90.94  E-value=1.2  Score=38.54  Aligned_cols=96  Identities=11%  Similarity=0.025  Sum_probs=58.3

Q ss_pred             CCCCCeEEEEcC--CCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcccccccc--CCcCCCCce
Q 026122           73 CNSNLKLVDVGT--GAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK--DVSFREQYD  148 (243)
Q Consensus        73 ~~~~~~VLDiGc--G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--~~~~~~~fD  148 (243)
                      +.++.+||=.|+  |.|..++.+|+.. +++|++++.+++..+.++    .+|...  ++..+-.++..  .......+|
T Consensus       141 ~~~g~~vlI~ga~g~vG~~aiqlA~~~-G~~vi~~~~s~~~~~~l~----~~Ga~~--vi~~~~~~~~~~v~~~~~~gvd  213 (329)
T cd08294         141 PKAGETVVVNGAAGAVGSLVGQIAKIK-GCKVIGCAGSDDKVAWLK----ELGFDA--VFNYKTVSLEEALKEAAPDGID  213 (329)
T ss_pred             CCCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHH----HcCCCE--EEeCCCccHHHHHHHHCCCCcE
Confidence            345788888874  4555667777775 678999999987655554    355532  22221111110  000114599


Q ss_pred             EEEEcCcccHHHHHHHHccCcccCeEEEEE
Q 026122          149 VAVARAVAEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       149 ~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                      +|+-....   ..++.+.+.|+++|+++..
T Consensus       214 ~vld~~g~---~~~~~~~~~l~~~G~iv~~  240 (329)
T cd08294         214 CYFDNVGG---EFSSTVLSHMNDFGRVAVC  240 (329)
T ss_pred             EEEECCCH---HHHHHHHHhhccCCEEEEE
Confidence            99864322   4557788899999998754

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]

Probab=90.88  E-value=0.36  Score=44.18  Aligned_cols=106  Identities=13%  Similarity=0.129  Sum_probs=61.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHc-CCCCEEEEEccccccccCCcCCCCceEEEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPD--WKVTLLESMNKRCVFLEHAVSLT-QLLNVQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~--~~v~~vD~s~~~~~~a~~~~~~~-~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      ...++|+|.|.|.-.-.+....++  -.++.||.+..|......+.+.- ......+......+...+......||+|++
T Consensus       201 pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi~  280 (491)
T KOG2539|consen  201 PDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVIC  280 (491)
T ss_pred             hHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEEe
Confidence            567999999988765444444433  57999999999999888877651 111111111011111111011256999998


Q ss_pred             cC--------cccHHHHHHHHccCcccCeEEEEEeCC
Q 026122          153 RA--------VAEMRILAEYCLPLVRVGGLFVAAKGH  181 (243)
Q Consensus       153 ~~--------~~~~~~~l~~~~~~LkpgG~l~~~~~~  181 (243)
                      .-        .......-+...+..++||.++++...
T Consensus       281 ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g  317 (491)
T KOG2539|consen  281 AHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKG  317 (491)
T ss_pred             eeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecC
Confidence            42        222333334455677899998888743

>PRK11524 putative methyltransferase; Provisional

Probab=90.74  E-value=0.51  Score=40.69  Aligned_cols=73  Identities=14%  Similarity=0.045  Sum_probs=46.7

Q ss_pred             CEEEEEccccccccCCcCCCCceEEEEcCc--------------------ccHHHHHHHHccCcccCeEEEEEeCCCcHH
Q 026122          126 NVQIVRGRAETLGKDVSFREQYDVAVARAV--------------------AEMRILAEYCLPLVRVGGLFVAAKGHDPQE  185 (243)
Q Consensus       126 ~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~--------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~  185 (243)
                      +.+++++|..+..... ..+++|+|+++..                    .-+..+++++.++|||||.+++..+.....
T Consensus         8 ~~~i~~gD~~~~l~~l-~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~~~~~~   86 (284)
T PRK11524          8 AKTIIHGDALTELKKI-PSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNSTENMP   86 (284)
T ss_pred             CCEEEeccHHHHHHhc-ccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCchhhh
Confidence            4578889988753211 1368999999521                    012578899999999999999876543322


Q ss_pred             HHHHHHHHHHHhCCeeeE
Q 026122          186 EVKNSERAVQLMGASLLQ  203 (243)
Q Consensus       186 ~~~~~~~~l~~~g~~~~~  203 (243)
                      .    ...+.+.||....
T Consensus        87 ~----~~~~~~~~f~~~~  100 (284)
T PRK11524         87 F----IDLYCRKLFTIKS  100 (284)
T ss_pred             H----HHHHHhcCcceEE
Confidence            2    2333455665444

>PRK07806 short chain dehydrogenase; Provisional

Probab=90.66  E-value=2.9  Score=34.52  Aligned_cols=103  Identities=17%  Similarity=0.040  Sum_probs=59.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHH-HHHHHHHHHHHcCCCCEEEEEccccccccCC-------cCCC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNK-RCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------SFRE  145 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~-~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-------~~~~  145 (243)
                      ++++|-.|+.. .++..+++..  .+.+|++++.+.. ..+......+..+ .++.++.+|+.+.....       ...+
T Consensus         6 ~k~vlItGasg-giG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~   83 (248)
T PRK07806          6 GKTALVTGSSR-GIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAG-GRASAVGADLTDEESVAALMDTAREEFG   83 (248)
T ss_pred             CcEEEEECCCC-cHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcC-CceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence            67899888654 4555665432  4678999887642 2333333333333 24778888887643110       0013


Q ss_pred             CceEEEEcCcc-----------------cHHHHHHHHccCcccCeEEEEEeC
Q 026122          146 QYDVAVARAVA-----------------EMRILAEYCLPLVRVGGLFVAAKG  180 (243)
Q Consensus       146 ~fD~I~~~~~~-----------------~~~~~l~~~~~~LkpgG~l~~~~~  180 (243)
                      ..|+++.++..                 ....+++.+.+.++.+|++++..+
T Consensus        84 ~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS  135 (248)
T PRK07806         84 GLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTS  135 (248)
T ss_pred             CCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeC
Confidence            57888865411                 134567777777766777776653

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=90.46  E-value=1.2  Score=39.51  Aligned_cols=97  Identities=11%  Similarity=0.137  Sum_probs=57.7

Q ss_pred             CCCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcc---c-cccccCCcCCCCc
Q 026122           73 CNSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGR---A-ETLGKDVSFREQY  147 (243)
Q Consensus        73 ~~~~~~VLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d---~-~~~~~~~~~~~~f  147 (243)
                      +.++.+||=.|+|. |..++.+|+..+..+|+++|.++...+.+++    .+..  .++..+   . +.+... . ...+
T Consensus       184 ~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~----~g~~--~~i~~~~~~~~~~v~~~-~-~~~~  255 (365)
T cd08278         184 PRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKE----LGAT--HVINPKEEDLVAAIREI-T-GGGV  255 (365)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCc--EEecCCCcCHHHHHHHH-h-CCCC
Confidence            34578888888753 4555666766644479999999876665543    4432  222211   1 111110 1 2469


Q ss_pred             eEEEEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122          148 DVAVARAVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       148 D~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      |+|+-....  ...+..+.+.++++|+++...
T Consensus       256 d~vld~~g~--~~~~~~~~~~l~~~G~~v~~g  285 (365)
T cd08278         256 DYALDTTGV--PAVIEQAVDALAPRGTLALVG  285 (365)
T ss_pred             cEEEECCCC--cHHHHHHHHHhccCCEEEEeC
Confidence            999864322  234567778899999977654

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=90.40  E-value=3.6  Score=35.37  Aligned_cols=92  Identities=9%  Similarity=0.075  Sum_probs=54.2

Q ss_pred             CeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc--------CC----------CCEEEEEccccccc
Q 026122           77 LKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT--------QL----------LNVQIVRGRAETLG  138 (243)
Q Consensus        77 ~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~--------~~----------~~v~~~~~d~~~~~  138 (243)
                      .+|.=||+|+=..++.......+.+|+.+|.+++.++.+++.+++.        .+          .++++ ..|..+..
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~~a~   82 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLAEAV   82 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHHHHh
Confidence            3677788875433333333334679999999999888776654221        11          12222 23333211


Q ss_pred             cCCcCCCCceEEEEcCccc---HHHHHHHHccCcccCeEE
Q 026122          139 KDVSFREQYDVAVARAVAE---MRILAEYCLPLVRVGGLF  175 (243)
Q Consensus       139 ~~~~~~~~fD~I~~~~~~~---~~~~l~~~~~~LkpgG~l  175 (243)
                            ...|+|+.....+   ...+++.+.+.++++-.+
T Consensus        83 ------~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii  116 (287)
T PRK08293         83 ------KDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIF  116 (287)
T ss_pred             ------cCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEE
Confidence                  4579998754433   466777888888777554

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=90.35  E-value=2.1  Score=38.12  Aligned_cols=99  Identities=10%  Similarity=0.015  Sum_probs=56.5

Q ss_pred             CCCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEE--ccccc-cccCCcCCCCc
Q 026122           73 CNSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVR--GRAET-LGKDVSFREQY  147 (243)
Q Consensus        73 ~~~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~--~d~~~-~~~~~~~~~~f  147 (243)
                      ++++.+||=.||| .|..++.+|+.....+|+++|.+++..+.+++    +|... +....  .++.+ +...  ..+.+
T Consensus       183 ~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~----~Ga~~~i~~~~~~~~~~~~v~~~--~~~g~  256 (368)
T TIGR02818       183 VEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKK----LGATDCVNPNDYDKPIQEVIVEI--TDGGV  256 (368)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCCeEEcccccchhHHHHHHHH--hCCCC
Confidence            3458899989875 24455666766543489999999987666643    45432 11110  11111 1100  01358


Q ss_pred             eEEEEcCcccHHHHHHHHccCcccC-eEEEEEe
Q 026122          148 DVAVARAVAEMRILAEYCLPLVRVG-GLFVAAK  179 (243)
Q Consensus       148 D~I~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~  179 (243)
                      |+|+-..-.  ...+..+.+.++++ |+++...
T Consensus       257 d~vid~~G~--~~~~~~~~~~~~~~~G~~v~~g  287 (368)
T TIGR02818       257 DYSFECIGN--VNVMRAALECCHKGWGESIIIG  287 (368)
T ss_pred             CEEEECCCC--HHHHHHHHHHhhcCCCeEEEEe
Confidence            998864321  23455666788886 9877654

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=90.35  E-value=1.3  Score=39.94  Aligned_cols=100  Identities=15%  Similarity=0.031  Sum_probs=56.1

Q ss_pred             CCCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEc---cccc-cccCCcCCCCc
Q 026122           73 CNSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRG---RAET-LGKDVSFREQY  147 (243)
Q Consensus        73 ~~~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~---d~~~-~~~~~~~~~~f  147 (243)
                      +.++.+||=.|+| .|..++.+|+......|+.+|.+++..+.+++    +|..  .+...   +..+ +... .....+
T Consensus       183 ~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~----~Ga~--~v~~~~~~~~~~~v~~~-~~~~g~  255 (393)
T TIGR02819       183 VGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARS----FGCE--TVDLSKDATLPEQIEQI-LGEPEV  255 (393)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH----cCCe--EEecCCcccHHHHHHHH-cCCCCC
Confidence            3457777777775 33344556666544457777888876665543    4542  12211   1111 1100 001358


Q ss_pred             eEEEEcCccc------------HHHHHHHHccCcccCeEEEEEe
Q 026122          148 DVAVARAVAE------------MRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       148 D~I~~~~~~~------------~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      |+++-..-..            ....++.+.+.+++||++++.-
T Consensus       256 Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G  299 (393)
T TIGR02819       256 DCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPG  299 (393)
T ss_pred             cEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEee
Confidence            9998643221            1246777888999999988754

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]

Probab=90.27  E-value=0.79  Score=41.01  Aligned_cols=64  Identities=19%  Similarity=0.171  Sum_probs=55.8

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcccccc
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETL  137 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~  137 (243)
                      .++.+|+|.+|-.|.-+..+|... +..++.|.|.+.+..+..++..+..|...++...+|....
T Consensus       212 ~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~t  276 (413)
T KOG2360|consen  212 RPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLNT  276 (413)
T ss_pred             CCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCccccccccccCC
Confidence            347899999999999888887654 4689999999999999999999999988888889998875

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=90.26  E-value=1.9  Score=38.25  Aligned_cols=94  Identities=17%  Similarity=0.174  Sum_probs=53.1

Q ss_pred             CCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEE-ccccccccCCcCCCCceEEE
Q 026122           74 NSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVR-GRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        74 ~~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~-~d~~~~~~~~~~~~~fD~I~  151 (243)
                      .++.+||=.|+| .|..++.+|+.. +.+|++++.+++..   ...++++|...  ++. .+...+...   .+.+|+|+
T Consensus       182 ~~g~~VlV~G~G~vG~~avq~Ak~~-Ga~vi~~~~~~~~~---~~~~~~~Ga~~--vi~~~~~~~~~~~---~~~~D~vi  252 (360)
T PLN02586        182 EPGKHLGVAGLGGLGHVAVKIGKAF-GLKVTVISSSSNKE---DEAINRLGADS--FLVSTDPEKMKAA---IGTMDYII  252 (360)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCcchh---hhHHHhCCCcE--EEcCCCHHHHHhh---cCCCCEEE
Confidence            347788888875 344455566665 56899998876432   22334456532  221 111111111   13589998


Q ss_pred             EcCcccHHHHHHHHccCcccCeEEEEE
Q 026122          152 ARAVAEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       152 ~~~~~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                      -..- . ...++.+.+.|++||+++..
T Consensus       253 d~~g-~-~~~~~~~~~~l~~~G~iv~v  277 (360)
T PLN02586        253 DTVS-A-VHALGPLLGLLKVNGKLITL  277 (360)
T ss_pred             ECCC-C-HHHHHHHHHHhcCCcEEEEe
Confidence            5432 1 22456677889999998754

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=90.13  E-value=2.4  Score=37.10  Aligned_cols=98  Identities=18%  Similarity=0.138  Sum_probs=56.5

Q ss_pred             CCCCCeEEEEcCCC-ChHHHHHHHHCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCCE-EEEEcc----ccccccCCcCCC
Q 026122           73 CNSNLKLVDVGTGA-GLPGLVLAIACPDWK-VTLLESMNKRCVFLEHAVSLTQLLNV-QIVRGR----AETLGKDVSFRE  145 (243)
Q Consensus        73 ~~~~~~VLDiGcG~-G~~~~~la~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~d----~~~~~~~~~~~~  145 (243)
                      +.++.+||-.|+|. |..++.+|+..+ .+ |++++.+++..+.+++    .+...+ .....+    ..++... ....
T Consensus       160 ~~~g~~vlI~g~g~vG~~a~~lak~~G-~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~~~~~-~~~~  233 (343)
T cd05285         160 VRPGDTVLVFGAGPIGLLTAAVAKAFG-ATKVVVTDIDPSRLEFAKE----LGATHTVNVRTEDTPESAEKIAEL-LGGK  233 (343)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHH----cCCcEEeccccccchhHHHHHHHH-hCCC
Confidence            34578888887764 555666776654 55 9999998876665543    343321 111111    1111110 0014


Q ss_pred             CceEEEEcCcccHHHHHHHHccCcccCeEEEEE
Q 026122          146 QYDVAVARAVAEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       146 ~fD~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                      .+|+|+.....  ...+..+.+.|+++|+++..
T Consensus       234 ~~d~vld~~g~--~~~~~~~~~~l~~~G~~v~~  264 (343)
T cd05285         234 GPDVVIECTGA--ESCIQTAIYATRPGGTVVLV  264 (343)
T ss_pred             CCCEEEECCCC--HHHHHHHHHHhhcCCEEEEE
Confidence            59999975332  23566778899999997754

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]

Probab=89.73  E-value=12  Score=31.85  Aligned_cols=144  Identities=15%  Similarity=0.106  Sum_probs=94.8

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccC-CcCCCCceEEEE
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD-VSFREQYDVAVA  152 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~~~fD~I~~  152 (243)
                      +++.+ |..=|||=.++..+.  +++-++.++|+.++-....+++..  +..++++.++|-...... ....++=-+|+.
T Consensus        88 N~~~~-l~~YpGSP~lA~~ll--R~qDRl~l~ELHp~D~~~L~~~f~--~d~~vrv~~~DG~~~l~a~LPP~erRglVLI  162 (279)
T COG2961          88 NPGGG-LRYYPGSPLLARQLL--REQDRLVLTELHPSDAPLLRNNFA--GDRRVRVLRGDGFLALKAHLPPKERRGLVLI  162 (279)
T ss_pred             CCCCC-cccCCCCHHHHHHHc--chhceeeeeecCccHHHHHHHHhC--CCcceEEEecCcHHHHhhhCCCCCcceEEEe
Confidence            43444 788888876654444  345689999999987777777765  445799999986542111 000134566776


Q ss_pred             cC----cccHHHHHHHHccCcc--cCeEEEEEeCCCcHHHHHHHHHHHHHhCC-eeeEEEEEecCCCCC----ceEEEEE
Q 026122          153 RA----VAEMRILAEYCLPLVR--VGGLFVAAKGHDPQEEVKNSERAVQLMGA-SLLQLCSVESQSPFG----QRTAVVC  221 (243)
Q Consensus       153 ~~----~~~~~~~l~~~~~~Lk--pgG~l~~~~~~~~~~~~~~~~~~l~~~g~-~~~~~~~~~~~~~~~----~r~~v~~  221 (243)
                      ..    -.++..+++.+...++  ++|...+.......+++..+.+.++..|. ++..++--..|..+.    ...++++
T Consensus       163 DPPfE~~~eY~rvv~~l~~~~kRf~~g~yaiWYPik~r~~~~~f~~~L~~~~i~kiL~iEL~VrP~~d~~gm~gSGMivI  242 (279)
T COG2961         163 DPPFELKDEYQRVVEALAEAYKRFATGTYAIWYPIKDRRQIRRFLRALEALGIRKILQIELAVRPDSDPRGMNGSGMIVI  242 (279)
T ss_pred             CCCcccccHHHHHHHHHHHHHHhhcCceEEEEEeecchHHHHHHHHHHhhcCccceeeeEEEecCCCCCCCccceeEEEE
Confidence            43    3367777777777776  58898898888888899999999999998 444444322343332    4555555


Q ss_pred             E
Q 026122          222 L  222 (243)
Q Consensus       222 ~  222 (243)
                      .
T Consensus       243 N  243 (279)
T COG2961         243 N  243 (279)
T ss_pred             C
Confidence            4

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=89.69  E-value=3  Score=36.28  Aligned_cols=104  Identities=18%  Similarity=0.181  Sum_probs=59.1

Q ss_pred             CeEEEEcCCC-C-hHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEE-ccccccc---cCCcCCCCceEE
Q 026122           77 LKLVDVGTGA-G-LPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVR-GRAETLG---KDVSFREQYDVA  150 (243)
Q Consensus        77 ~~VLDiGcG~-G-~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~-~d~~~~~---~~~~~~~~fD~I  150 (243)
                      .+|+=+|||. | .++..|++.  +..|+.++.+++.++..++   ..|+   .+.. +......   ......+.||+|
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~--G~~V~lv~r~~~~~~~i~~---~~Gl---~i~~~g~~~~~~~~~~~~~~~~~~D~v   74 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARA--GLPVRLILRDRQRLAAYQQ---AGGL---TLVEQGQASLYAIPAETADAAEPIHRL   74 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhC--CCCeEEEEechHHHHHHhh---cCCe---EEeeCCcceeeccCCCCcccccccCEE
Confidence            5788899983 3 345555533  5789999998754443332   2222   1110 1100000   000112579998


Q ss_pred             EEcC-cccHHHHHHHHccCcccCeEEEEEe-CCCcHHHHH
Q 026122          151 VARA-VAEMRILAEYCLPLVRVGGLFVAAK-GHDPQEEVK  188 (243)
Q Consensus       151 ~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~-~~~~~~~~~  188 (243)
                      +... ..+....++.+.+.+.++..++... |-...+.+.
T Consensus        75 iv~vK~~~~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~  114 (305)
T PRK05708         75 LLACKAYDAEPAVASLAHRLAPGAELLLLQNGLGSQDAVA  114 (305)
T ss_pred             EEECCHHhHHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHH
Confidence            8754 2356788889999999998877666 444444443

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=89.67  E-value=2.3  Score=35.21  Aligned_cols=78  Identities=13%  Similarity=0.004  Sum_probs=49.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccC---------CcCC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD---------VSFR  144 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~---------~~~~  144 (243)
                      +++||=.|+ +|.++..+++.+  .+++|+++|.++...+...+.++..+..++.++..|+......         ....
T Consensus        12 ~k~vlItG~-~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~   90 (247)
T PRK08945         12 DRIILVTGA-GDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIEEQF   90 (247)
T ss_pred             CCEEEEeCC-CchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHHHHh
Confidence            778999995 556666666543  4679999999987666555555554444567777776421100         0001


Q ss_pred             CCceEEEEcC
Q 026122          145 EQYDVAVARA  154 (243)
Q Consensus       145 ~~fD~I~~~~  154 (243)
                      ++.|.|+.++
T Consensus        91 ~~id~vi~~A  100 (247)
T PRK08945         91 GRLDGVLHNA  100 (247)
T ss_pred             CCCCEEEECC
Confidence            4689998764

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=89.66  E-value=3.1  Score=36.88  Aligned_cols=100  Identities=11%  Similarity=0.010  Sum_probs=55.6

Q ss_pred             CCCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCE-EEEEc--cccccccCCcCCCCce
Q 026122           73 CNSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNV-QIVRG--RAETLGKDVSFREQYD  148 (243)
Q Consensus        73 ~~~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~--d~~~~~~~~~~~~~fD  148 (243)
                      ++++.+||=.|+| .|..++.+|+..+..+|+++|.+++..+.++    .+|...+ .....  +..+.... ...+.+|
T Consensus       184 ~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~----~lGa~~~i~~~~~~~~~~~~v~~-~~~~g~d  258 (368)
T cd08300         184 VEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAK----KFGATDCVNPKDHDKPIQQVLVE-MTDGGVD  258 (368)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH----HcCCCEEEcccccchHHHHHHHH-HhCCCCc
Confidence            4558899888864 2334455566654337999999998766554    3554321 11110  11110000 0013699


Q ss_pred             EEEEcCcccHHHHHHHHccCcccC-eEEEEEe
Q 026122          149 VAVARAVAEMRILAEYCLPLVRVG-GLFVAAK  179 (243)
Q Consensus       149 ~I~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~  179 (243)
                      +|+-..-.  ...+..+.+.++++ |+++...
T Consensus       259 ~vid~~g~--~~~~~~a~~~l~~~~G~~v~~g  288 (368)
T cd08300         259 YTFECIGN--VKVMRAALEACHKGWGTSVIIG  288 (368)
T ss_pred             EEEECCCC--hHHHHHHHHhhccCCCeEEEEc
Confidence            99864321  23556667788887 8877653

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.66  E-value=0.17  Score=39.66  Aligned_cols=76  Identities=22%  Similarity=0.289  Sum_probs=48.2

Q ss_pred             eEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC---
Q 026122           78 KLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA---  154 (243)
Q Consensus        78 ~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~---  154 (243)
                      -.+-||||.=..       .|++..+-++-.++                +.+++-...+..+.   +++.|+|.+.-   
T Consensus         5 ~kv~ig~G~~r~-------npgWi~~d~ed~~~----------------vdlvc~As~e~~F~---dns~d~iyaeHvlE   58 (185)
T COG4627           5 EKVKIGAGGKRV-------NPGWIITDVEDRPE----------------VDLVCRASNESMFE---DNSVDAIYAEHVLE   58 (185)
T ss_pred             eEEEEecccccc-------CCCceeeehhcccc----------------cchhhhhhhhccCC---CcchHHHHHHHHHH
Confidence            457789987544       47777665554431                22222222223333   27899999853   


Q ss_pred             ---cccHHHHHHHHccCcccCeEEEEEe
Q 026122          155 ---VAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       155 ---~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                         ...-..+++++++.|||||++-+..
T Consensus        59 Hlt~~Eg~~alkechr~Lrp~G~LriAv   86 (185)
T COG4627          59 HLTYDEGTSALKECHRFLRPGGKLRIAV   86 (185)
T ss_pred             HHhHHHHHHHHHHHHHHhCcCcEEEEEc
Confidence               2345678899999999999988754

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=89.46  E-value=1.3  Score=38.92  Aligned_cols=100  Identities=13%  Similarity=0.059  Sum_probs=59.0

Q ss_pred             CCCCCeEEEEcCC--CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccccccCCcCCCCceE
Q 026122           73 CNSNLKLVDVGTG--AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDV  149 (243)
Q Consensus        73 ~~~~~~VLDiGcG--~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~fD~  149 (243)
                      ++++.+||=.|+.  -|..++.+|+.... .++++-.+++..+    .++++|-+. +.+...|+.+-.........+|+
T Consensus       140 l~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~----~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDv  214 (326)
T COG0604         140 LKPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLE----LLKELGADHVINYREEDFVEQVRELTGGKGVDV  214 (326)
T ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHH----HHHhcCCCEEEcCCcccHHHHHHHHcCCCCceE
Confidence            3558899999854  45577888888754 6666766665333    445566542 33334443332111111136999


Q ss_pred             EEEcCcccHHHHHHHHccCcccCeEEEEEeC
Q 026122          150 AVARAVAEMRILAEYCLPLVRVGGLFVAAKG  180 (243)
Q Consensus       150 I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  180 (243)
                      |+-.--   ...+....+.|+++|+++.+-.
T Consensus       215 v~D~vG---~~~~~~~l~~l~~~G~lv~ig~  242 (326)
T COG0604         215 VLDTVG---GDTFAASLAALAPGGRLVSIGA  242 (326)
T ss_pred             EEECCC---HHHHHHHHHHhccCCEEEEEec
Confidence            997432   2334456678899999887653

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=89.38  E-value=3.9  Score=35.34  Aligned_cols=95  Identities=19%  Similarity=0.174  Sum_probs=57.0

Q ss_pred             CCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEE
Q 026122           74 NSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        74 ~~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      .++.+||-.||| .|..++.+|+.. +.+|++++.+++..+.+++    .+...  ++..+-.+.....  .+.+|+++.
T Consensus       161 ~~~~~vlI~g~g~iG~~~~~~a~~~-G~~v~~~~~~~~~~~~~~~----~g~~~--~~~~~~~~~~~~~--~~~~d~vi~  231 (330)
T cd08245         161 RPGERVAVLGIGGLGHLAVQYARAM-GFETVAITRSPDKRELARK----LGADE--VVDSGAELDEQAA--AGGADVILV  231 (330)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----hCCcE--EeccCCcchHHhc--cCCCCEEEE
Confidence            457889999886 555555666654 5789999999886665532    34321  1111111111000  145899986


Q ss_pred             cCcccHHHHHHHHccCcccCeEEEEEe
Q 026122          153 RAVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       153 ~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      ....  ...+..+.+.|+++|.++...
T Consensus       232 ~~~~--~~~~~~~~~~l~~~G~~i~~~  256 (330)
T cd08245         232 TVVS--GAAAEAALGGLRRGGRIVLVG  256 (330)
T ss_pred             CCCc--HHHHHHHHHhcccCCEEEEEC
Confidence            4322  235567788999999987653

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=89.32  E-value=3.8  Score=37.51  Aligned_cols=95  Identities=14%  Similarity=0.126  Sum_probs=54.3

Q ss_pred             CCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122           75 SNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        75 ~~~~VLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      .+++|+=+|+|. |......++.. +.+|+.+|+++.....+    ...|.   ++.  ++.+..      ..+|+|+..
T Consensus       211 ~Gk~VlViG~G~IG~~vA~~lr~~-Ga~ViV~d~dp~ra~~A----~~~G~---~v~--~l~eal------~~aDVVI~a  274 (425)
T PRK05476        211 AGKVVVVAGYGDVGKGCAQRLRGL-GARVIVTEVDPICALQA----AMDGF---RVM--TMEEAA------ELGDIFVTA  274 (425)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhC-CCEEEEEcCCchhhHHH----HhcCC---Eec--CHHHHH------hCCCEEEEC
Confidence            388999999984 22222223333 57999999998643222    22232   221  333321      458999875


Q ss_pred             CcccHHHHHH-HHccCcccCeEEEEEeCCCcHHHH
Q 026122          154 AVAEMRILAE-YCLPLVRVGGLFVAAKGHDPQEEV  187 (243)
Q Consensus       154 ~~~~~~~~l~-~~~~~LkpgG~l~~~~~~~~~~~~  187 (243)
                      . .. ..++. .....+|+|++++..-..+..-++
T Consensus       275 T-G~-~~vI~~~~~~~mK~GailiNvG~~d~Eid~  307 (425)
T PRK05476        275 T-GN-KDVITAEHMEAMKDGAILANIGHFDNEIDV  307 (425)
T ss_pred             C-CC-HHHHHHHHHhcCCCCCEEEEcCCCCCccCh
Confidence            3 22 23444 677889999987765444433333

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=89.19  E-value=1.1  Score=39.55  Aligned_cols=99  Identities=14%  Similarity=0.068  Sum_probs=62.1

Q ss_pred             CCCCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEc----cccccccCCcCCCC
Q 026122           72 SCNSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRG----RAETLGKDVSFREQ  146 (243)
Q Consensus        72 ~~~~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~----d~~~~~~~~~~~~~  146 (243)
                      ..+++.+|.=+||| -|..++.-|+.....++++||++++.+++|++    +|..  .+++.    |+-+.... ..+..
T Consensus       182 ~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~----fGAT--~~vn~~~~~~vv~~i~~-~T~gG  254 (366)
T COG1062         182 KVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKK----FGAT--HFVNPKEVDDVVEAIVE-LTDGG  254 (366)
T ss_pred             cCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHh----cCCc--eeecchhhhhHHHHHHH-hcCCC
Confidence            45679999999998 57777777888778899999999998887765    4432  23322    22221110 00135


Q ss_pred             ceEEEEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122          147 YDVAVARAVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       147 fD~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      .|.++-. ..+ ...++.+...+.++|..++.-
T Consensus       255 ~d~~~e~-~G~-~~~~~~al~~~~~~G~~v~iG  285 (366)
T COG1062         255 ADYAFEC-VGN-VEVMRQALEATHRGGTSVIIG  285 (366)
T ss_pred             CCEEEEc-cCC-HHHHHHHHHHHhcCCeEEEEe
Confidence            6776532 122 225566666777788877654

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=89.15  E-value=5.3  Score=31.95  Aligned_cols=99  Identities=13%  Similarity=0.123  Sum_probs=57.7

Q ss_pred             EEEEcCCCChHHHHHHH--HCCCCEEEEEeCCHHHHHHHHHHHHH--------cCC---------CCEEEEEcccccccc
Q 026122           79 LVDVGTGAGLPGLVLAI--ACPDWKVTLLESMNKRCVFLEHAVSL--------TQL---------LNVQIVRGRAETLGK  139 (243)
Q Consensus        79 VLDiGcG~G~~~~~la~--~~~~~~v~~vD~s~~~~~~a~~~~~~--------~~~---------~~v~~~~~d~~~~~~  139 (243)
                      |.=||+|  ..|..+|.  ...+.+|+.+|.+++.++.+++.+++        ..+         .+++ ...|++++  
T Consensus         2 V~ViGaG--~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~dl~~~--   76 (180)
T PF02737_consen    2 VAVIGAG--TMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-FTTDLEEA--   76 (180)
T ss_dssp             EEEES-S--HHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-EESSGGGG--
T ss_pred             EEEEcCC--HHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-cccCHHHH--
Confidence            4446665  44433332  33478999999999999888776654        111         1243 34455554  


Q ss_pred             CCcCCCCceEEEEcCccc---HHHHHHHHccCcccCeEEEEEeCCCcHHHH
Q 026122          140 DVSFREQYDVAVARAVAE---MRILAEYCLPLVRVGGLFVAAKGHDPQEEV  187 (243)
Q Consensus       140 ~~~~~~~fD~I~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~  187 (243)
                           ...|+|+-....+   -.++++++.+.+.|+-.|.-..+.-...++
T Consensus        77 -----~~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~l  122 (180)
T PF02737_consen   77 -----VDADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISEL  122 (180)
T ss_dssp             -----CTESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHH
T ss_pred             -----hhhheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHH
Confidence                 2589999754333   478999999999998776655454444444

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=89.11  E-value=7.2  Score=33.53  Aligned_cols=92  Identities=15%  Similarity=0.161  Sum_probs=55.1

Q ss_pred             CeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc-------CC----------CCEEEEEcccccccc
Q 026122           77 LKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT-------QL----------LNVQIVRGRAETLGK  139 (243)
Q Consensus        77 ~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~~----------~~v~~~~~d~~~~~~  139 (243)
                      .+|.=||+|+=..++.......+.+|+.+|.+++.++.+.+..+++       +.          .++++ ..+.+.+  
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~--   81 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARIST-ATDLEDL--   81 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEe-eCCHHHh--
Confidence            4677788875443333333344679999999999887755433221       21          11332 2233221  


Q ss_pred             CCcCCCCceEEEEcCccc---HHHHHHHHccCcccCeEEE
Q 026122          140 DVSFREQYDVAVARAVAE---MRILAEYCLPLVRVGGLFV  176 (243)
Q Consensus       140 ~~~~~~~fD~I~~~~~~~---~~~~l~~~~~~LkpgG~l~  176 (243)
                           ...|+|+.....+   ...+++.+.+.++++..++
T Consensus        82 -----~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~  116 (292)
T PRK07530         82 -----ADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILA  116 (292)
T ss_pred             -----cCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEE
Confidence                 4579998754332   4567788888888887654

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=89.08  E-value=4.5  Score=34.93  Aligned_cols=97  Identities=16%  Similarity=0.108  Sum_probs=57.1

Q ss_pred             CCCCeEEEEcCC-CChHHHHHHHHCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcccccccc-CCcCCCCceEE
Q 026122           74 NSNLKLVDVGTG-AGLPGLVLAIACPDWK-VTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK-DVSFREQYDVA  150 (243)
Q Consensus        74 ~~~~~VLDiGcG-~G~~~~~la~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~~~fD~I  150 (243)
                      .++.+||-+|+| .|..++.+|+.. +.+ |++++.+++..+.++    +.+..  .++..+-.+... .......+|++
T Consensus       158 ~~g~~vlI~g~g~vg~~~~~la~~~-G~~~v~~~~~~~~~~~~~~----~~g~~--~~~~~~~~~~~~~~~~~~~~vd~v  230 (334)
T cd08234         158 KPGDSVLVFGAGPIGLLLAQLLKLN-GASRVTVAEPNEEKLELAK----KLGAT--ETVDPSREDPEAQKEDNPYGFDVV  230 (334)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHH----HhCCe--EEecCCCCCHHHHHHhcCCCCcEE
Confidence            347899999865 255556667665 455 899999988666553    33432  222221111100 00012569999


Q ss_pred             EEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122          151 VARAVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       151 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      +.....  ...+..+.+.|+++|+++...
T Consensus       231 ~~~~~~--~~~~~~~~~~l~~~G~~v~~g  257 (334)
T cd08234         231 IEATGV--PKTLEQAIEYARRGGTVLVFG  257 (334)
T ss_pred             EECCCC--hHHHHHHHHHHhcCCEEEEEe
Confidence            975322  345667778899999987653

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=89.06  E-value=1.2  Score=40.16  Aligned_cols=114  Identities=21%  Similarity=0.217  Sum_probs=62.1

Q ss_pred             CeEEEEcCCCChHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccc----------ccc--CCc
Q 026122           77 LKLVDVGTGAGLPGLVLAIA--CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAET----------LGK--DVS  142 (243)
Q Consensus        77 ~~VLDiGcG~G~~~~~la~~--~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~----------~~~--~~~  142 (243)
                      .+|-=+|=|  ++|+.+|..  ..+.+|+|+|+++..++...+-.       ..+..-+..+          +..  ...
T Consensus        10 ~~I~ViGLG--YVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~-------~~i~e~~~~~~v~~~v~~g~lraTtd~~   80 (436)
T COG0677          10 ATIGVIGLG--YVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGE-------SYIEEPDLDEVVKEAVESGKLRATTDPE   80 (436)
T ss_pred             eEEEEEccc--cccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCc-------ceeecCcHHHHHHHHHhcCCceEecChh
Confidence            455556555  445455543  34689999999998877653211       1111111111          000  000


Q ss_pred             CCCCceEEEEc-----------CcccHHHHHHHHccCcccCeEEEEEe--CCCcHHHHHHHHHHHHH-hCCee
Q 026122          143 FREQYDVAVAR-----------AVAEMRILAEYCLPLVRVGGLFVAAK--GHDPQEEVKNSERAVQL-MGASL  201 (243)
Q Consensus       143 ~~~~fD~I~~~-----------~~~~~~~~l~~~~~~LkpgG~l~~~~--~~~~~~~~~~~~~~l~~-~g~~~  201 (243)
                      .-...|+++..           .++-.....+.+.+.|++|-.+++.+  .+...+++...+.  +. .|+..
T Consensus        81 ~l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~pll--e~~sgL~~  151 (436)
T COG0677          81 ELKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLL--EERSGLKF  151 (436)
T ss_pred             hcccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHH--hhcCCCcc
Confidence            00256766642           12346778888999999998877766  3455666544332  33 55654

>TIGR01761 thiaz-red thiazolinyl imide reductase

Probab=88.95  E-value=4  Score=36.34  Aligned_cols=112  Identities=16%  Similarity=0.123  Sum_probs=65.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCC-CCEEEE-EeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACP-DWKVTL-LESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~-~~~v~~-vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      ..+|.=||||.|..-+......+ +.+++| +|.+++   .+++.++++|+.    ...|++++...    ...|+|...
T Consensus         3 ~~rVgViG~~~G~~h~~al~~~~~~~eLvaV~d~~~e---rA~~~A~~~gi~----~y~~~eell~d----~Di~~V~ip   71 (343)
T TIGR01761         3 VQSVVVCGTRFGQFYLAAFAAAPERFELAGILAQGSE---RSRALAHRLGVP----LYCEVEELPDD----IDIACVVVR   71 (343)
T ss_pred             CcEEEEEeHHHHHHHHHHHHhCCCCcEEEEEEcCCHH---HHHHHHHHhCCC----ccCCHHHHhcC----CCEEEEEeC
Confidence            46889999977754222222345 677777 688775   466666777653    34677776521    346777763


Q ss_pred             C-cc--cHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeee
Q 026122          154 A-VA--EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLL  202 (243)
Q Consensus       154 ~-~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~  202 (243)
                      . ..  .-.   +.+...|+.|=.+++++.-. .++..++.+..++.|....
T Consensus        72 t~~P~~~H~---e~a~~aL~aGkHVL~EKPla-~~Ea~el~~~A~~~g~~l~  119 (343)
T TIGR01761        72 SAIVGGQGS---ALARALLARGIHVLQEHPLH-PRDIQDLLRLAERQGRRYL  119 (343)
T ss_pred             CCCCCccHH---HHHHHHHhCCCeEEEcCCCC-HHHHHHHHHHHHHcCCEEE
Confidence            2 11  112   22334555565556655543 5777777777777776543

This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).

>COG4121 Uncharacterized conserved protein [Function unknown]

Probab=88.88  E-value=4.6  Score=34.29  Aligned_cols=136  Identities=16%  Similarity=0.071  Sum_probs=86.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCC------------CCEEEEEeCCHHHHHHH-------------HHHHH----------
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACP------------DWKVTLLESMNKRCVFL-------------EHAVS----------  120 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~------------~~~v~~vD~s~~~~~~a-------------~~~~~----------  120 (243)
                      .-.|+++|-|+|...+.+-+..+            ..++++++.++..-..+             .+...          
T Consensus        59 ~~~i~E~gfgtglnfl~~~~~~~~~~~~~~~~~~~~l~~~S~e~~P~~~~~l~~l~~~pel~~~~~~l~~~~~~~~~~~~  138 (252)
T COG4121          59 ILQILEIGFGTGLNFLTAHLAIGDARQAKLEVVLLDLKFDSIELDPFSPPKCPALWTVPFLCHLADALAPTGPLATYGCA  138 (252)
T ss_pred             ceeehhhhcccchhHHHHHhhhhhhhhccccccccccceEEEEeCCCChhhhHHHhhhhhHHHHHHHHhhccCcccchhH
Confidence            45799999999998766655432            24577887654322111             11110          


Q ss_pred             ---HcCCCCEEEEEccccccccCCcCCC---CceEEEEcCcc---c----HHHHHHHHccCcccCeEEEEEeCCCcHHHH
Q 026122          121 ---LTQLLNVQIVRGRAETLGKDVSFRE---QYDVAVARAVA---E----MRILAEYCLPLVRVGGLFVAAKGHDPQEEV  187 (243)
Q Consensus       121 ---~~~~~~v~~~~~d~~~~~~~~~~~~---~fD~I~~~~~~---~----~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~  187 (243)
                         ..|..+..++.+|+.+..++.  +.   ++|+.+-.+.+   +    -.+++..+++..+|||.+.-...      .
T Consensus       139 r~~~~g~~~l~l~~gd~~~~~p~~--~~~~~~~dAwflDgFsP~kNP~mW~~e~l~~~a~~~~~~~~l~t~ss------A  210 (252)
T COG4121         139 AAVRHGLLLLGLVIGDAGDGIPPV--PRRRPGTDAWFLDGFRPVKNPEMWEDELLNLMARIPYRDPTLATFAA------A  210 (252)
T ss_pred             HhhhcchheeeeeeeehhhcCCcc--cccccCccEEecCCccccCChhhccHHHHHHHHhhcCCCCceechHH------H
Confidence               012334678888887765432  23   68999987643   2    27788899999999999664332      3


Q ss_pred             HHHHHHHHHhCCeeeEEEEEecCCCCCceEEEEEEee
Q 026122          188 KNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKS  224 (243)
Q Consensus       188 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~v~~~k~  224 (243)
                      .-.++.+.++||++...     ++....|.+....+.
T Consensus       211 ~~vRr~L~~aGF~v~~r-----~g~grKRem~~a~~~  242 (252)
T COG4121         211 IAVRRRLEQAGFTVEKR-----TGRGKKRELLRGVKI  242 (252)
T ss_pred             HHHHHHHHHcCceeeec-----CCccccccchhhhcc
Confidence            44577888999988765     344556776665553

>cd08293 PTGR2 Prostaglandin reductase

Probab=88.70  E-value=2.1  Score=37.27  Aligned_cols=91  Identities=12%  Similarity=0.126  Sum_probs=55.9

Q ss_pred             CeEEEEcC--CCChHHHHHHHHCCCC-EEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEc---cccc-cccCCcCCCCceE
Q 026122           77 LKLVDVGT--GAGLPGLVLAIACPDW-KVTLLESMNKRCVFLEHAVSLTQLLNVQIVRG---RAET-LGKDVSFREQYDV  149 (243)
Q Consensus        77 ~~VLDiGc--G~G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~---d~~~-~~~~~~~~~~fD~  149 (243)
                      .+||=.|+  |.|..++.+|+.. ++ +|++++.+++..+.+++   .+|.+.  ++..   ++.+ +...  ....+|+
T Consensus       156 ~~VlI~ga~g~vG~~aiqlAk~~-G~~~Vi~~~~s~~~~~~~~~---~lGa~~--vi~~~~~~~~~~i~~~--~~~gvd~  227 (345)
T cd08293         156 QTMVVSGAAGACGSLAGQIGRLL-GCSRVVGICGSDEKCQLLKS---ELGFDA--AINYKTDNVAERLREL--CPEGVDV  227 (345)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHH---hcCCcE--EEECCCCCHHHHHHHH--CCCCceE
Confidence            78888886  4666777788776 55 89999999875555443   255532  2221   1111 1100  1146999


Q ss_pred             EEEcCcccHHHHHHHHccCcccCeEEEEE
Q 026122          150 AVARAVAEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       150 I~~~~~~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                      |+......   .+..+.+.|+++|+++..
T Consensus       228 vid~~g~~---~~~~~~~~l~~~G~iv~~  253 (345)
T cd08293         228 YFDNVGGE---ISDTVISQMNENSHIILC  253 (345)
T ss_pred             EEECCCcH---HHHHHHHHhccCCEEEEE
Confidence            99643221   246777899999998864

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=88.55  E-value=4.1  Score=35.01  Aligned_cols=88  Identities=22%  Similarity=0.203  Sum_probs=53.6

Q ss_pred             CCCCeEEEEcCCCChHHHH---HHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEE
Q 026122           74 NSNLKLVDVGTGAGLPGLV---LAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVA  150 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~---la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I  150 (243)
                      .++.+||=.|+  |.++..   +|+.. +.+|++++.+++..+.+++    +|...+...    .+. ..   ...+|++
T Consensus       154 ~~g~~vlV~g~--g~vg~~~~q~a~~~-G~~vi~~~~~~~~~~~~~~----~g~~~~~~~----~~~-~~---~~~~d~v  218 (319)
T cd08242         154 TPGDKVAVLGD--GKLGLLIAQVLALT-GPDVVLVGRHSEKLALARR----LGVETVLPD----EAE-SE---GGGFDVV  218 (319)
T ss_pred             CCCCEEEEECC--CHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHH----cCCcEEeCc----ccc-cc---CCCCCEE
Confidence            44788888875  455544   44444 5689999999887666654    454321111    111 11   1569999


Q ss_pred             EEcCcccHHHHHHHHccCcccCeEEEEE
Q 026122          151 VARAVAEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       151 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                      +-....  ...++.+.+.|+++|+++..
T Consensus       219 id~~g~--~~~~~~~~~~l~~~g~~v~~  244 (319)
T cd08242         219 VEATGS--PSGLELALRLVRPRGTVVLK  244 (319)
T ss_pred             EECCCC--hHHHHHHHHHhhcCCEEEEE
Confidence            975322  33456667788999998763

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>COG1255 Uncharacterized protein conserved in archaea [Function unknown]

Probab=88.51  E-value=2.4  Score=31.48  Aligned_cols=82  Identities=20%  Similarity=0.121  Sum_probs=52.5

Q ss_pred             CCeEEEEcCCCCh-HHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEE-c
Q 026122           76 NLKLVDVGTGAGL-PGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA-R  153 (243)
Q Consensus        76 ~~~VLDiGcG~G~-~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~-~  153 (243)
                      .++|+++|-|-=. ++-.|++.  ++.|+++|+++.       ++.    ..++++..|+.+-...  .-...|+|.| +
T Consensus        14 ~gkVvEVGiG~~~~VA~~L~e~--g~dv~atDI~~~-------~a~----~g~~~v~DDitnP~~~--iY~~A~lIYSiR   78 (129)
T COG1255          14 RGKVVEVGIGFFLDVAKRLAER--GFDVLATDINEK-------TAP----EGLRFVVDDITNPNIS--IYEGADLIYSIR   78 (129)
T ss_pred             CCcEEEEccchHHHHHHHHHHc--CCcEEEEecccc-------cCc----ccceEEEccCCCccHH--HhhCccceeecC
Confidence            4599999998643 34444433  589999999985       111    2478999999875432  1256899998 4


Q ss_pred             CcccHHHHHHHHccCcccC
Q 026122          154 AVAEMRILAEYCLPLVRVG  172 (243)
Q Consensus       154 ~~~~~~~~l~~~~~~Lkpg  172 (243)
                      ..+++...+-.+.+.++-.
T Consensus        79 pppEl~~~ildva~aVga~   97 (129)
T COG1255          79 PPPELQSAILDVAKAVGAP   97 (129)
T ss_pred             CCHHHHHHHHHHHHhhCCC
Confidence            4445554444555555443

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=88.34  E-value=5.9  Score=28.75  Aligned_cols=109  Identities=17%  Similarity=0.148  Sum_probs=66.3

Q ss_pred             eEEEEcCCCChHHH--HHHHHCCCCEEE-EEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           78 KLVDVGTGAGLPGL--VLAIACPDWKVT-LLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        78 ~VLDiGcG~G~~~~--~la~~~~~~~v~-~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      +|.=||+|...-..  .+....++.+++ .+|.+++..+   +..++.+.+    ...|++++...    ...|+|+...
T Consensus         2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~---~~~~~~~~~----~~~~~~~ll~~----~~~D~V~I~t   70 (120)
T PF01408_consen    2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAE---AFAEKYGIP----VYTDLEELLAD----EDVDAVIIAT   70 (120)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHH---HHHHHTTSE----EESSHHHHHHH----TTESEEEEES
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHH---HHHHHhccc----chhHHHHHHHh----hcCCEEEEec
Confidence            56678887653322  223333667776 5799886444   335555553    55677776432    4699998754


Q ss_pred             cc-cHHHHHHHHccCcccCeEEEEEeC-CCcHHHHHHHHHHHHHhCCe
Q 026122          155 VA-EMRILAEYCLPLVRVGGLFVAAKG-HDPQEEVKNSERAVQLMGAS  200 (243)
Q Consensus       155 ~~-~~~~~l~~~~~~LkpgG~l~~~~~-~~~~~~~~~~~~~l~~~g~~  200 (243)
                      .. ...++   +...++.|-.+++..+ ....++..++.+..++.|..
T Consensus        71 p~~~h~~~---~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~~  115 (120)
T PF01408_consen   71 PPSSHAEI---AKKALEAGKHVLVEKPLALTLEEAEELVEAAKEKGVK  115 (120)
T ss_dssp             SGGGHHHH---HHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHHHTSC
T ss_pred             CCcchHHH---HHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHhCCE
Confidence            33 22333   3345555667777664 35678888888888888864

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>PLN02494 adenosylhomocysteinase

Probab=88.28  E-value=3.7  Score=38.06  Aligned_cols=88  Identities=13%  Similarity=0.057  Sum_probs=52.3

Q ss_pred             CCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           76 NLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        76 ~~~VLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      +++|+=+|+|. |......++.+ +++|+.+|.++.....+    ...|..   +.  +.++..      ...|+|+...
T Consensus       254 GKtVvViGyG~IGr~vA~~aka~-Ga~VIV~e~dp~r~~eA----~~~G~~---vv--~leEal------~~ADVVI~tT  317 (477)
T PLN02494        254 GKVAVICGYGDVGKGCAAAMKAA-GARVIVTEIDPICALQA----LMEGYQ---VL--TLEDVV------SEADIFVTTT  317 (477)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCchhhHHH----HhcCCe---ec--cHHHHH------hhCCEEEECC
Confidence            88999999983 33222333333 67999999998533222    223332   22  333321      3579998732


Q ss_pred             cccHHHHHHHHccCcccCeEEEEEeC
Q 026122          155 VAEMRILAEYCLPLVRVGGLFVAAKG  180 (243)
Q Consensus       155 ~~~~~~~l~~~~~~LkpgG~l~~~~~  180 (243)
                       .+...+.+...+.+|+||.++-...
T Consensus       318 -Gt~~vI~~e~L~~MK~GAiLiNvGr  342 (477)
T PLN02494        318 -GNKDIIMVDHMRKMKNNAIVCNIGH  342 (477)
T ss_pred             -CCccchHHHHHhcCCCCCEEEEcCC
Confidence             2333344677789999999776543

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=88.22  E-value=4.4  Score=32.62  Aligned_cols=88  Identities=20%  Similarity=0.195  Sum_probs=45.9

Q ss_pred             CCChHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHH------------HHHcC-CCCEEEEEccccccccCCcCCCCceE
Q 026122           85 GAGLPGLVLAIA--CPDWKVTLLESMNKRCVFLEHA------------VSLTQ-LLNVQIVRGRAETLGKDVSFREQYDV  149 (243)
Q Consensus        85 G~G~~~~~la~~--~~~~~v~~vD~s~~~~~~a~~~------------~~~~~-~~~v~~~~~d~~~~~~~~~~~~~fD~  149 (243)
                      |.|++|+.+|..  ..+.+|+|+|++++.++..++-            .++.. -.+..+. .|..+..      ...|+
T Consensus         7 GlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~ai------~~adv   79 (185)
T PF03721_consen    7 GLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEAI------KDADV   79 (185)
T ss_dssp             --STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHHH------HH-SE
T ss_pred             CCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhhh------hccce
Confidence            455555555543  3468999999999877766431            11110 1122222 2333311      34677


Q ss_pred             EEEcC-----------cccHHHHHHHHccCcccCeEEEEEe
Q 026122          150 AVARA-----------VAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       150 I~~~~-----------~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      ++..-           ...+...++.+.+.++++-.+++.+
T Consensus        80 ~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~S  120 (185)
T PF03721_consen   80 VFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIES  120 (185)
T ss_dssp             EEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESS
T ss_pred             EEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEcc
Confidence            77521           2347888899999999966655544

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=88.12  E-value=2.7  Score=36.69  Aligned_cols=97  Identities=11%  Similarity=0.041  Sum_probs=58.8

Q ss_pred             CCCCCeEEEEcC--CCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCE-EEEEc-cccc-cccCCcCCCCc
Q 026122           73 CNSNLKLVDVGT--GAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNV-QIVRG-RAET-LGKDVSFREQY  147 (243)
Q Consensus        73 ~~~~~~VLDiGc--G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~-d~~~-~~~~~~~~~~f  147 (243)
                      +.++.+||=.|+  |.|..++.+|+.. +.+|++++.+++..+.+++.   +|...+ ..... +..+ +...  ....+
T Consensus       149 ~~~g~~VlI~Ga~G~vG~~aiqlAk~~-G~~Vi~~~~~~~~~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~--~~~gv  222 (338)
T cd08295         149 PKKGETVFVSAASGAVGQLVGQLAKLK-GCYVVGSAGSDEKVDLLKNK---LGFDDAFNYKEEPDLDAALKRY--FPNGI  222 (338)
T ss_pred             CCCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHh---cCCceeEEcCCcccHHHHHHHh--CCCCc
Confidence            455889998886  3555666777765 57899999988765555431   454321 11111 2211 1111  01469


Q ss_pred             eEEEEcCcccHHHHHHHHccCcccCeEEEEE
Q 026122          148 DVAVARAVAEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       148 D~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                      |+|+-....   ..+..+.+.|+++|+++..
T Consensus       223 d~v~d~~g~---~~~~~~~~~l~~~G~iv~~  250 (338)
T cd08295         223 DIYFDNVGG---KMLDAVLLNMNLHGRIAAC  250 (338)
T ss_pred             EEEEECCCH---HHHHHHHHHhccCcEEEEe
Confidence            999864322   4567778899999998764

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=88.10  E-value=1.7  Score=37.90  Aligned_cols=96  Identities=18%  Similarity=0.159  Sum_probs=56.4

Q ss_pred             CCCCeEEEEcCCC-ChHHHHHHHHCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcc---ccccccCCcCCCCce
Q 026122           74 NSNLKLVDVGTGA-GLPGLVLAIACPDWK-VTLLESMNKRCVFLEHAVSLTQLLNVQIVRGR---AETLGKDVSFREQYD  148 (243)
Q Consensus        74 ~~~~~VLDiGcG~-G~~~~~la~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d---~~~~~~~~~~~~~fD  148 (243)
                      .++.+||-.|+|+ |..++.+|+.. +.+ |++++.+++..+.++    ..+..  .++..+   ..++... .....+|
T Consensus       158 ~~~~~vlI~g~g~~g~~~~~lA~~~-G~~~v~~~~~~~~~~~~l~----~~g~~--~~~~~~~~~~~~~~~~-~~~~~~d  229 (343)
T cd08236         158 TLGDTVVVIGAGTIGLLAIQWLKIL-GAKRVIAVDIDDEKLAVAR----ELGAD--DTINPKEEDVEKVREL-TEGRGAD  229 (343)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHH----HcCCC--EEecCccccHHHHHHH-hCCCCCC
Confidence            4477899998754 55666677665 455 999999887655443    34442  222211   1111110 0013499


Q ss_pred             EEEEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122          149 VAVARAVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       149 ~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      +++.....  ...+..+.+.|+++|.++...
T Consensus       230 ~vld~~g~--~~~~~~~~~~l~~~G~~v~~g  258 (343)
T cd08236         230 LVIEAAGS--PATIEQALALARPGGKVVLVG  258 (343)
T ss_pred             EEEECCCC--HHHHHHHHHHhhcCCEEEEEc
Confidence            99975322  345567788899999977653

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=87.99  E-value=1.6  Score=39.31  Aligned_cols=46  Identities=13%  Similarity=0.243  Sum_probs=33.2

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHH
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVS  120 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~  120 (243)
                      +.++++||-|.+| |..++.+....| .+|++||+|+......+-...
T Consensus        33 i~~~d~vl~ItSa-G~N~L~yL~~~P-~~I~aVDlNp~Q~aLleLKlA   78 (380)
T PF11899_consen   33 IGPDDRVLTITSA-GCNALDYLLAGP-KRIHAVDLNPAQNALLELKLA   78 (380)
T ss_pred             CCCCCeEEEEccC-CchHHHHHhcCC-ceEEEEeCCHHHHHHHHHHHH
Confidence            4558899999665 555556655555 699999999988877765443

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted

Probab=87.97  E-value=5.8  Score=33.55  Aligned_cols=117  Identities=12%  Similarity=0.076  Sum_probs=71.3

Q ss_pred             cCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcccccccc--CCcCCCCceEEEEcC----cc
Q 026122           83 GTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK--DVSFREQYDVAVARA----VA  156 (243)
Q Consensus        83 GcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--~~~~~~~fD~I~~~~----~~  156 (243)
                      ..=+|.+.+.....++.-+.+++|+.+.-.+..+++.+.  ..++++.+.|..+...  .+. ..+=-+|+..-    ..
T Consensus        63 ~~YPGSP~ia~~llR~qDrl~l~ELHp~d~~~L~~~~~~--~~~v~v~~~DG~~~l~allPP-~~rRglVLIDPpYE~~~  139 (245)
T PF04378_consen   63 RFYPGSPAIAARLLREQDRLVLFELHPQDFEALKKNFRR--DRRVRVHHRDGYEGLKALLPP-PERRGLVLIDPPYEQKD  139 (245)
T ss_dssp             -EEE-HHHHHHHHS-TTSEEEEE--SHHHHHHHTTS--T--TS-EEEE-S-HHHHHHHH-S--TTS-EEEEE-----STT
T ss_pred             CcCCCCHHHHHHhCCccceEEEEecCchHHHHHHHHhcc--CCccEEEeCchhhhhhhhCCC-CCCCeEEEECCCCCCch
Confidence            344566665555556677999999999888877766553  2469999999766211  100 13455777752    34


Q ss_pred             cHHHHHHHHccCcc--cCeEEEEEeCCCcHHHHHHHHHHHHHhCCeee
Q 026122          157 EMRILAEYCLPLVR--VGGLFVAAKGHDPQEEVKNSERAVQLMGASLL  202 (243)
Q Consensus       157 ~~~~~l~~~~~~Lk--pgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~  202 (243)
                      ++..+.+.+...+|  +.|.+++..+--...+...+.+.+++.|....
T Consensus       140 dy~~v~~~l~~a~kR~~~G~~~iWYPi~~~~~~~~~~~~l~~~~~~~~  187 (245)
T PF04378_consen  140 DYQRVVDALAKALKRWPTGVYAIWYPIKDRERVDRFLRALKALGIKKV  187 (245)
T ss_dssp             HHHHHHHHHHHHHHH-TTSEEEEEEEESSHHHHHHHHHHHHHH-SSE-
T ss_pred             HHHHHHHHHHHHHHhcCCcEEEEEeecccHHHHHHHHHHHHhcCCCCe
Confidence            67777777777776  68998888877677788888898998887643

; PDB: 2OO3_A.

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=87.97  E-value=2.9  Score=36.50  Aligned_cols=98  Identities=20%  Similarity=0.220  Sum_probs=54.0

Q ss_pred             CCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccc-cccCCcCCCCceEE
Q 026122           74 NSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAET-LGKDVSFREQYDVA  150 (243)
Q Consensus        74 ~~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~-~~~~~~~~~~fD~I  150 (243)
                      .++.+||=.|+| .|..++.+|+..+..+|+++|.++...+.++    .++.+. +.....+... +... .....+|+|
T Consensus       165 ~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~----~~g~~~~v~~~~~~~~~~i~~~-~~~~~~d~v  239 (345)
T cd08286         165 KPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAK----KLGATHTVNSAKGDAIEQVLEL-TDGRGVDVV  239 (345)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH----HhCCCceeccccccHHHHHHHH-hCCCCCCEE
Confidence            446777667653 2223344566654378999999887655444    345432 2221112111 1100 001469999


Q ss_pred             EEcCcccHHHHHHHHccCcccCeEEEEE
Q 026122          151 VARAVAEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       151 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                      +... .. ...++.+.+.|+++|.++..
T Consensus       240 ld~~-g~-~~~~~~~~~~l~~~g~~v~~  265 (345)
T cd08286         240 IEAV-GI-PATFELCQELVAPGGHIANV  265 (345)
T ss_pred             EECC-CC-HHHHHHHHHhccCCcEEEEe
Confidence            8643 22 33567777899999997754

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=87.86  E-value=2.5  Score=40.17  Aligned_cols=80  Identities=14%  Similarity=0.016  Sum_probs=49.6

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHc-----CC---CCEEEEEccccccccCCcC
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLT-----QL---LNVQIVRGRAETLGKDVSF  143 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~-----~~---~~v~~~~~d~~~~~~~~~~  143 (243)
                      +.+.+||=.|+ +|.+|..+++..  .+.+|++++.+.+.++.....+...     +.   .+++++.+|+.+.......
T Consensus        78 ~~gKvVLVTGA-TGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~a  156 (576)
T PLN03209         78 KDEDLAFVAGA-TGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPA  156 (576)
T ss_pred             CCCCEEEEECC-CCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHH
Confidence            34677777776 466676666543  4689999999987665444333321     11   2478899999874321111


Q ss_pred             CCCceEEEEcC
Q 026122          144 REQYDVAVARA  154 (243)
Q Consensus       144 ~~~fD~I~~~~  154 (243)
                      -+..|+||+++
T Consensus       157 LggiDiVVn~A  167 (576)
T PLN03209        157 LGNASVVICCI  167 (576)
T ss_pred             hcCCCEEEEcc
Confidence            14689988764

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=87.83  E-value=3.1  Score=36.47  Aligned_cols=98  Identities=16%  Similarity=0.095  Sum_probs=55.0

Q ss_pred             CCCCeEEEEcCC-CChHHHHHHHHCCCC-EEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccc-cccCCcCCCCceE
Q 026122           74 NSNLKLVDVGTG-AGLPGLVLAIACPDW-KVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAET-LGKDVSFREQYDV  149 (243)
Q Consensus        74 ~~~~~VLDiGcG-~G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~-~~~~~~~~~~fD~  149 (243)
                      .++.+||=.|+| .|..++.+|+.. +. +|++++.+++..+.+++    +|.+. +.....++.+ +... .....+|+
T Consensus       171 ~~g~~vlI~g~g~vG~~a~q~a~~~-G~~~v~~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~l~~~-~~~~~~d~  244 (351)
T cd08233         171 KPGDTALVLGAGPIGLLTILALKAA-GASKIIVSEPSEARRELAEE----LGATIVLDPTEVDVVAEVRKL-TGGGGVDV  244 (351)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHH----hCCCEEECCCccCHHHHHHHH-hCCCCCCE
Confidence            447788888764 233445556655 45 89999999887666543    35431 1111111111 1100 00134999


Q ss_pred             EEEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122          150 AVARAVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       150 I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      |+-....  ...++.+.+.|+++|.++...
T Consensus       245 vid~~g~--~~~~~~~~~~l~~~G~~v~~g  272 (351)
T cd08233         245 SFDCAGV--QATLDTAIDALRPRGTAVNVA  272 (351)
T ss_pred             EEECCCC--HHHHHHHHHhccCCCEEEEEc
Confidence            9975321  234566778899999977654

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=87.77  E-value=1.3  Score=38.71  Aligned_cols=47  Identities=13%  Similarity=0.087  Sum_probs=35.5

Q ss_pred             CCCCCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCCHHHHHHHHH
Q 026122           71 SSCNSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEH  117 (243)
Q Consensus        71 ~~~~~~~~VLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~  117 (243)
                      ..++++.+|.=+|+|. |.-.+.-|+..++.+++|||++++..+.+++
T Consensus       188 Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~  235 (375)
T KOG0022|consen  188 AKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKE  235 (375)
T ss_pred             cccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHh
Confidence            3567789999999985 4334445666777899999999998777654

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=87.76  E-value=4.7  Score=35.70  Aligned_cols=99  Identities=11%  Similarity=0.062  Sum_probs=55.4

Q ss_pred             CCCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCE-EEEEc--cccc-cccCCcCCCCc
Q 026122           73 CNSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNV-QIVRG--RAET-LGKDVSFREQY  147 (243)
Q Consensus        73 ~~~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~--d~~~-~~~~~~~~~~f  147 (243)
                      +.++.+||=+|+| .|..++.+|+..+..+|+++|.+++..+.++    .+|...+ .....  +..+ +...  ....+
T Consensus       182 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~----~~ga~~~i~~~~~~~~~~~~~~~~--~~~g~  255 (365)
T cd08277         182 VEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAK----EFGATDFINPKDSDKPVSEVIREM--TGGGV  255 (365)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH----HcCCCcEeccccccchHHHHHHHH--hCCCC
Confidence            3458888888864 2334455566654337999999987666653    3454321 11110  0011 1110  01358


Q ss_pred             eEEEEcCcccHHHHHHHHccCcccC-eEEEEEe
Q 026122          148 DVAVARAVAEMRILAEYCLPLVRVG-GLFVAAK  179 (243)
Q Consensus       148 D~I~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~  179 (243)
                      |+|+-..-.  ...+..+.+.++++ |+++...
T Consensus       256 d~vid~~g~--~~~~~~~~~~l~~~~G~~v~~g  286 (365)
T cd08277         256 DYSFECTGN--ADLMNEALESTKLGWGVSVVVG  286 (365)
T ss_pred             CEEEECCCC--hHHHHHHHHhcccCCCEEEEEc
Confidence            999964322  24556677788885 8877654

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family

Probab=87.75  E-value=3.9  Score=36.54  Aligned_cols=100  Identities=18%  Similarity=0.089  Sum_probs=54.4

Q ss_pred             CCCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCE-EEEEc---cc-cccccCCcCCCC
Q 026122           73 CNSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNV-QIVRG---RA-ETLGKDVSFREQ  146 (243)
Q Consensus        73 ~~~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~---d~-~~~~~~~~~~~~  146 (243)
                      ++++.+||=.|+| .|..++.+|+..+..+|++++.+++..+.    ++++|.+.+ .....   +. ..+... .....
T Consensus       201 ~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~----~~~~g~~~~v~~~~~~~~~~~~~v~~~-~~g~g  275 (384)
T cd08265         201 FRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNL----AKEMGADYVFNPTKMRDCLSGEKVMEV-TKGWG  275 (384)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHH----HHHcCCCEEEcccccccccHHHHHHHh-cCCCC
Confidence            3457788777764 22233445555543379999998864433    344555321 11110   11 111100 00145


Q ss_pred             ceEEEEcCcccHHHHHHHHccCcccCeEEEEE
Q 026122          147 YDVAVARAVAEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       147 fD~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                      +|+|+.. .......+..+.+.|+++|+++..
T Consensus       276 vDvvld~-~g~~~~~~~~~~~~l~~~G~~v~~  306 (384)
T cd08265         276 ADIQVEA-AGAPPATIPQMEKSIAINGKIVYI  306 (384)
T ss_pred             CCEEEEC-CCCcHHHHHHHHHHHHcCCEEEEE
Confidence            9999864 333344567778889999998765

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi

>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function

Probab=87.72  E-value=2  Score=37.58  Aligned_cols=110  Identities=18%  Similarity=0.234  Sum_probs=68.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--------------------CCCEEEEEeCCHH--HHHHHHHHHHHc-----------
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC--------------------PDWKVTLLESMNK--RCVFLEHAVSLT-----------  122 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~--------------------~~~~v~~vD~s~~--~~~~a~~~~~~~-----------  122 (243)
                      ..+||-||.|.|.--+++|..+                    +..+|++||+.+-  .+......+...           
T Consensus        87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~  166 (315)
T PF11312_consen   87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN  166 (315)
T ss_pred             CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence            4699999999987555555433                    1258999998753  223333333222           


Q ss_pred             -CC---C--CEEEEEccccccccCCc---CC-CCceEEEE----c-----CcccHHHHHHHHccCcccCeEEEEEeCCCc
Q 026122          123 -QL---L--NVQIVRGRAETLGKDVS---FR-EQYDVAVA----R-----AVAEMRILAEYCLPLVRVGGLFVAAKGHDP  183 (243)
Q Consensus       123 -~~---~--~v~~~~~d~~~~~~~~~---~~-~~fD~I~~----~-----~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  183 (243)
                       ..   .  +++|.+.|+..+.....   +. ...|+|..    |     ....--.++..+-..++||-.|++..++..
T Consensus       167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSpGS  246 (315)
T PF11312_consen  167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSPGS  246 (315)
T ss_pred             cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCCCC
Confidence             01   1  48899999988754210   00 13455543    1     233457788899999999999999886554


Q ss_pred             HH
Q 026122          184 QE  185 (243)
Q Consensus       184 ~~  185 (243)
                      -.
T Consensus       247 YS  248 (315)
T PF11312_consen  247 YS  248 (315)
T ss_pred             ch
Confidence            33

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=87.31  E-value=8.8  Score=34.73  Aligned_cols=33  Identities=24%  Similarity=0.433  Sum_probs=22.5

Q ss_pred             CCChHHHHHHHHC-CCCEEEEEeCCHHHHHHHHH
Q 026122           85 GAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEH  117 (243)
Q Consensus        85 G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~  117 (243)
                      |.|.+|+.+|... .+.+|+++|++++.++.+++
T Consensus         7 GlGyvGl~~A~~lA~G~~VigvD~d~~kv~~l~~   40 (388)
T PRK15057          7 GTGYVGLSNGLLIAQNHEVVALDILPSRVAMLND   40 (388)
T ss_pred             CCCHHHHHHHHHHHhCCcEEEEECCHHHHHHHHc
Confidence            4555554454332 25789999999998887765

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=87.26  E-value=5.7  Score=34.94  Aligned_cols=97  Identities=18%  Similarity=0.109  Sum_probs=53.9

Q ss_pred             CCCeEEEEcCC-CChHHHHHHHHCCCC-EEEEEeCCHHHHHHHHHHHHHcCCCCEE-EEEcccc----ccccCCcCCCCc
Q 026122           75 SNLKLVDVGTG-AGLPGLVLAIACPDW-KVTLLESMNKRCVFLEHAVSLTQLLNVQ-IVRGRAE----TLGKDVSFREQY  147 (243)
Q Consensus        75 ~~~~VLDiGcG-~G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~-~~~~d~~----~~~~~~~~~~~f  147 (243)
                      ++.+||=.|+| .|..++.+|+.. +. +|++++.+++..+.+    +++|...+- ....+..    .+... .....+
T Consensus       177 ~g~~vlI~g~g~vG~~~~~lak~~-G~~~v~~~~~~~~~~~~~----~~~g~~~vi~~~~~~~~~~~~~i~~~-~~~~~~  250 (361)
T cd08231         177 AGDTVVVQGAGPLGLYAVAAAKLA-GARRVIVIDGSPERLELA----REFGADATIDIDELPDPQRRAIVRDI-TGGRGA  250 (361)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHH----HHcCCCeEEcCcccccHHHHHHHHHH-hCCCCC
Confidence            47788888764 233344555554 46 899999988755544    345553211 1111110    11100 001469


Q ss_pred             eEEEEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122          148 DVAVARAVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       148 D~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      |+|+-....  ...+..+.+.++++|+++...
T Consensus       251 d~vid~~g~--~~~~~~~~~~l~~~G~~v~~g  280 (361)
T cd08231         251 DVVIEASGH--PAAVPEGLELLRRGGTYVLVG  280 (361)
T ss_pred             cEEEECCCC--hHHHHHHHHHhccCCEEEEEc
Confidence            999964322  234566778899999987654

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=86.95  E-value=3.9  Score=37.30  Aligned_cols=87  Identities=11%  Similarity=0.029  Sum_probs=54.2

Q ss_pred             CCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122           75 SNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        75 ~~~~VLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      ++++|+=+|||+ |......++.. +++|+.+|.++...+.|+    ..|..   ..  +..+..      ..+|+|+..
T Consensus       201 ~GktVvViG~G~IG~~va~~ak~~-Ga~ViV~d~d~~R~~~A~----~~G~~---~~--~~~e~v------~~aDVVI~a  264 (413)
T cd00401         201 AGKVAVVAGYGDVGKGCAQSLRGQ-GARVIVTEVDPICALQAA----MEGYE---VM--TMEEAV------KEGDIFVTT  264 (413)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECChhhHHHHH----hcCCE---Ec--cHHHHH------cCCCEEEEC
Confidence            488999999995 44444444444 569999999987655543    34542   22  122211      357999874


Q ss_pred             CcccHHHHHHH-HccCcccCeEEEEEe
Q 026122          154 AVAEMRILAEY-CLPLVRVGGLFVAAK  179 (243)
Q Consensus       154 ~~~~~~~~l~~-~~~~LkpgG~l~~~~  179 (243)
                      .- . ..++.. ..+.+|+||+++..-
T Consensus       265 tG-~-~~~i~~~~l~~mk~GgilvnvG  289 (413)
T cd00401         265 TG-N-KDIITGEHFEQMKDGAIVCNIG  289 (413)
T ss_pred             CC-C-HHHHHHHHHhcCCCCcEEEEeC
Confidence            32 2 234443 478999999976654

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=86.89  E-value=4.5  Score=36.19  Aligned_cols=93  Identities=17%  Similarity=0.182  Sum_probs=52.8

Q ss_pred             CCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEE-ccccccccCCcCCCCceEEEE
Q 026122           75 SNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVR-GRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        75 ~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~-~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      ++.+|+=.|+| .|..++.+|+.. +.+|+++|.+++..   .+.++.+|.+.  ++. .+...+...   .+.+|+|+-
T Consensus       178 ~g~~VlV~G~G~vG~~avq~Ak~~-Ga~Vi~~~~~~~~~---~~~a~~lGa~~--~i~~~~~~~v~~~---~~~~D~vid  248 (375)
T PLN02178        178 SGKRLGVNGLGGLGHIAVKIGKAF-GLRVTVISRSSEKE---REAIDRLGADS--FLVTTDSQKMKEA---VGTMDFIID  248 (375)
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHc-CCeEEEEeCChHHh---HHHHHhCCCcE--EEcCcCHHHHHHh---hCCCcEEEE
Confidence            47888888875 344455566665 56899999876421   22334566532  221 111111111   135899986


Q ss_pred             cCcccHHHHHHHHccCcccCeEEEEE
Q 026122          153 RAVAEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       153 ~~~~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                      ..-.  ...+..+.+.+++||+++..
T Consensus       249 ~~G~--~~~~~~~~~~l~~~G~iv~v  272 (375)
T PLN02178        249 TVSA--EHALLPLFSLLKVSGKLVAL  272 (375)
T ss_pred             CCCc--HHHHHHHHHhhcCCCEEEEE
Confidence            4321  23456667789999998764

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=86.58  E-value=3.3  Score=35.95  Aligned_cols=75  Identities=15%  Similarity=0.049  Sum_probs=54.0

Q ss_pred             CCeEEEEcCCCCh---HHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccC-------CcCCC
Q 026122           76 NLKLVDVGTGAGL---PGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD-------VSFRE  145 (243)
Q Consensus        76 ~~~VLDiGcG~G~---~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-------~~~~~  145 (243)
                      +..||=-|.|+|.   +++.+|++  ++++...|++++..+...+.+++.|  .+....+|+.+...-       ...-+
T Consensus        38 g~~vLITGgg~GlGr~ialefa~r--g~~~vl~Din~~~~~etv~~~~~~g--~~~~y~cdis~~eei~~~a~~Vk~e~G  113 (300)
T KOG1201|consen   38 GEIVLITGGGSGLGRLIALEFAKR--GAKLVLWDINKQGNEETVKEIRKIG--EAKAYTCDISDREEIYRLAKKVKKEVG  113 (300)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHh--CCeEEEEeccccchHHHHHHHHhcC--ceeEEEecCCCHHHHHHHHHHHHHhcC
Confidence            8899999999996   33444433  5789999999998887777777776  578888887663211       00125


Q ss_pred             CceEEEEcC
Q 026122          146 QYDVAVARA  154 (243)
Q Consensus       146 ~fD~I~~~~  154 (243)
                      ..|+++.|+
T Consensus       114 ~V~ILVNNA  122 (300)
T KOG1201|consen  114 DVDILVNNA  122 (300)
T ss_pred             CceEEEecc
Confidence            789999875

>TIGR00518 alaDH alanine dehydrogenase

Probab=86.50  E-value=1.5  Score=39.30  Aligned_cols=95  Identities=15%  Similarity=0.165  Sum_probs=50.9

Q ss_pred             CCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           76 NLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        76 ~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      +.+|+=+|+| .|..++..+... +++|+.+|.+++..+.+..   ..+. .+.....+..++...   -..+|+|+...
T Consensus       167 ~~~VlViGaG~vG~~aa~~a~~l-Ga~V~v~d~~~~~~~~l~~---~~g~-~v~~~~~~~~~l~~~---l~~aDvVI~a~  238 (370)
T TIGR00518       167 PGDVTIIGGGVVGTNAAKMANGL-GATVTILDINIDRLRQLDA---EFGG-RIHTRYSNAYEIEDA---VKRADLLIGAV  238 (370)
T ss_pred             CceEEEEcCCHHHHHHHHHHHHC-CCeEEEEECCHHHHHHHHH---hcCc-eeEeccCCHHHHHHH---HccCCEEEEcc
Confidence            5679999887 445555555554 5689999999865443322   2222 122211222222111   14689999753


Q ss_pred             -c--c-cHHHHHHHHccCcccCeEEEEE
Q 026122          155 -V--A-EMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       155 -~--~-~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                       +  . .+.-+-+...+.++||+.++-.
T Consensus       239 ~~~g~~~p~lit~~~l~~mk~g~vIvDv  266 (370)
T TIGR00518       239 LIPGAKAPKLVSNSLVAQMKPGAVIVDV  266 (370)
T ss_pred             ccCCCCCCcCcCHHHHhcCCCCCEEEEE
Confidence             1  1 1111224555667888876643

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=86.47  E-value=3.6  Score=37.17  Aligned_cols=104  Identities=13%  Similarity=0.064  Sum_probs=57.9

Q ss_pred             CCCCCeEEEEcC-C-CChHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHc----CCCCEEEEEc----cccccccC
Q 026122           73 CNSNLKLVDVGT-G-AGLPGLVLAIACP--DWKVTLLESMNKRCVFLEHAVSLT----QLLNVQIVRG----RAETLGKD  140 (243)
Q Consensus        73 ~~~~~~VLDiGc-G-~G~~~~~la~~~~--~~~v~~vD~s~~~~~~a~~~~~~~----~~~~v~~~~~----d~~~~~~~  140 (243)
                      ++++.+|+=+|+ | .|..++.+|+...  ..+|+++|.+++.++.+++.....    |.. ..++..    +..+....
T Consensus       173 ~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~-~~~i~~~~~~~~~~~v~~  251 (410)
T cd08238         173 IKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIE-LLYVNPATIDDLHATLME  251 (410)
T ss_pred             CCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCce-EEEECCCccccHHHHHHH
Confidence            355788888873 4 5666666776642  248999999999888776642110    221 122221    11110000


Q ss_pred             CcCCCCceEEEEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122          141 VSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       141 ~~~~~~fD~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      ......+|+|+.....  ...+..+.+.++++|.+++..
T Consensus       252 ~t~g~g~D~vid~~g~--~~~~~~a~~~l~~~G~~v~~~  288 (410)
T cd08238         252 LTGGQGFDDVFVFVPV--PELVEEADTLLAPDGCLNFFA  288 (410)
T ss_pred             HhCCCCCCEEEEcCCC--HHHHHHHHHHhccCCeEEEEE
Confidence            0001369988864311  345566778889888766543

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=86.31  E-value=4.5  Score=35.24  Aligned_cols=98  Identities=19%  Similarity=0.101  Sum_probs=53.7

Q ss_pred             CCCCeEEEEcCC-CChHHHHHHHHCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccc-cccCCcCCCCceE
Q 026122           74 NSNLKLVDVGTG-AGLPGLVLAIACPDWK-VTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAET-LGKDVSFREQYDV  149 (243)
Q Consensus        74 ~~~~~VLDiGcG-~G~~~~~la~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~-~~~~~~~~~~fD~  149 (243)
                      .++.+|+-.|+| .|..++.+|+.. +.+ |++++.+++..+.++    .++... +.....+..+ +... .....+|+
T Consensus       160 ~~g~~vlI~~~g~vg~~a~~la~~~-G~~~v~~~~~~~~~~~~~~----~~g~~~~v~~~~~~~~~~l~~~-~~~~~~d~  233 (340)
T TIGR00692       160 ISGKSVLVTGAGPIGLMAIAVAKAS-GAYPVIVSDPNEYRLELAK----KMGATYVVNPFKEDVVKEVADL-TDGEGVDV  233 (340)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHH----HhCCcEEEcccccCHHHHHHHh-cCCCCCCE
Confidence            347777777664 344455566665 455 899988876554443    344421 1111111111 1000 00146999


Q ss_pred             EEEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122          150 AVARAVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       150 I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      |+.....  ...+..+.+.|+++|+++...
T Consensus       234 vld~~g~--~~~~~~~~~~l~~~g~~v~~g  261 (340)
T TIGR00692       234 FLEMSGA--PKALEQGLQAVTPGGRVSLLG  261 (340)
T ss_pred             EEECCCC--HHHHHHHHHhhcCCCEEEEEc
Confidence            9975322  345667788899999977653

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>PRK06940 short chain dehydrogenase; Provisional

Probab=86.29  E-value=3.7  Score=34.84  Aligned_cols=75  Identities=15%  Similarity=0.023  Sum_probs=45.9

Q ss_pred             CeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC------cCCCCceE
Q 026122           77 LKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV------SFREQYDV  149 (243)
Q Consensus        77 ~~VLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~------~~~~~fD~  149 (243)
                      +.+|=.|+  |.++..+++.+ .+.+|+++|.++..++.+.+..+..+. ++.++.+|+.+.....      ...+..|+
T Consensus         3 k~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~   79 (275)
T PRK06940          3 EVVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAGF-DVSTQEVDVSSRESVKALAATAQTLGPVTG   79 (275)
T ss_pred             CEEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEeecCCHHHHHHHHHHHHhcCCCCE
Confidence            45665665  35776777654 467999999988766554444443332 4777888876632100      00146899


Q ss_pred             EEEcC
Q 026122          150 AVARA  154 (243)
Q Consensus       150 I~~~~  154 (243)
                      ++.++
T Consensus        80 li~nA   84 (275)
T PRK06940         80 LVHTA   84 (275)
T ss_pred             EEECC
Confidence            99865

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=86.26  E-value=9.7  Score=32.99  Aligned_cols=91  Identities=12%  Similarity=0.090  Sum_probs=51.2

Q ss_pred             CeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH-cCC-----------CCEEEEEccccccccCCcCC
Q 026122           77 LKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSL-TQL-----------LNVQIVRGRAETLGKDVSFR  144 (243)
Q Consensus        77 ~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~~-----------~~v~~~~~d~~~~~~~~~~~  144 (243)
                      .+|.=||+|.=..++.......+.+|+++|.+++.++.+++...+ .+.           .++++ ..|..+.      -
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~------~   77 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM-EAGLAAA------V   77 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE-eCCHHHH------h
Confidence            467778887533333333333467999999999988777664321 111           01121 1222221      1


Q ss_pred             CCceEEEEcCccc---HHHHHHHHccCcccCeE
Q 026122          145 EQYDVAVARAVAE---MRILAEYCLPLVRVGGL  174 (243)
Q Consensus       145 ~~fD~I~~~~~~~---~~~~l~~~~~~LkpgG~  174 (243)
                      ...|+|+.....+   ...++..+...++++-.
T Consensus        78 ~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~i  110 (311)
T PRK06130         78 SGADLVIEAVPEKLELKRDVFARLDGLCDPDTI  110 (311)
T ss_pred             ccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcE
Confidence            4579998754333   46677777776666544

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=86.25  E-value=8.5  Score=32.88  Aligned_cols=90  Identities=11%  Similarity=0.135  Sum_probs=52.5

Q ss_pred             eEEEEcCCCChHHHHHHH--HCCCCEEEEEeCCHHHHHHHHHHH-------HHcC-CC---------CEEEEEccccccc
Q 026122           78 KLVDVGTGAGLPGLVLAI--ACPDWKVTLLESMNKRCVFLEHAV-------SLTQ-LL---------NVQIVRGRAETLG  138 (243)
Q Consensus        78 ~VLDiGcG~G~~~~~la~--~~~~~~v~~vD~s~~~~~~a~~~~-------~~~~-~~---------~v~~~~~d~~~~~  138 (243)
                      +|.=||+|  .++..+|.  ...+.+|+++|++++.++.+++.+       .+.+ +.         ++++ ..|...+ 
T Consensus         5 kI~VIG~G--~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~~-   80 (282)
T PRK05808          5 KIGVIGAG--TMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLDDL-   80 (282)
T ss_pred             EEEEEccC--HHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHHHh-
Confidence            56667776  33333332  223579999999999887554322       2222 11         2221 2233221 


Q ss_pred             cCCcCCCCceEEEEcCccc---HHHHHHHHccCcccCeEEEE
Q 026122          139 KDVSFREQYDVAVARAVAE---MRILAEYCLPLVRVGGLFVA  177 (243)
Q Consensus       139 ~~~~~~~~fD~I~~~~~~~---~~~~l~~~~~~LkpgG~l~~  177 (243)
                            ...|+|+.....+   ...+++.+.+.++|+..+..
T Consensus        81 ------~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s  116 (282)
T PRK05808         81 ------KDADLVIEAATENMDLKKKIFAQLDEIAKPEAILAT  116 (282)
T ss_pred             ------ccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEE
Confidence                  4589999765433   24888888899988876533

>cd05281 TDH Threonine dehydrogenase

Probab=86.14  E-value=4.5  Score=35.27  Aligned_cols=99  Identities=16%  Similarity=0.031  Sum_probs=53.7

Q ss_pred             CCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCE-EEEEccccccccCCcCCCCceEEE
Q 026122           74 NSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNV-QIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        74 ~~~~~VLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      .++.+||-.|+|. |..++.+|+..+..+|++++.+++..+.++    .++...+ .....+...+... ...+.+|+|+
T Consensus       162 ~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~-~~~~~vd~vl  236 (341)
T cd05281         162 VSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAK----KMGADVVINPREEDVVEVKSV-TDGTGVDVVL  236 (341)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH----HhCcceeeCcccccHHHHHHH-cCCCCCCEEE
Confidence            3477787777653 445566676654337889988776555443    3444211 1111111111000 0114699999


Q ss_pred             EcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122          152 ARAVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       152 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      .....  ...+..+.+.|+++|.++...
T Consensus       237 d~~g~--~~~~~~~~~~l~~~G~~v~~g  262 (341)
T cd05281         237 EMSGN--PKAIEQGLKALTPGGRVSILG  262 (341)
T ss_pred             ECCCC--HHHHHHHHHHhccCCEEEEEc
Confidence            75322  234556677899999987653

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>PRK07102 short chain dehydrogenase; Provisional

Probab=86.07  E-value=4.8  Score=33.11  Aligned_cols=76  Identities=12%  Similarity=0.011  Sum_probs=47.2

Q ss_pred             CeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC----cCCCCceEE
Q 026122           77 LKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV----SFREQYDVA  150 (243)
Q Consensus        77 ~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~----~~~~~fD~I  150 (243)
                      ++|+=.|+ +|.++..+++..  .+.+|++++.++...+...+.....+-.++.++.+|+.+.....    .....+|.+
T Consensus         2 ~~vlItGa-s~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~v   80 (243)
T PRK07102          2 KKILIIGA-TSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPALPDIV   80 (243)
T ss_pred             cEEEEEcC-CcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhhcCCEE
Confidence            36787785 455666666543  36799999999876654444443333346889999987743210    011357999


Q ss_pred             EEc
Q 026122          151 VAR  153 (243)
Q Consensus       151 ~~~  153 (243)
                      +.+
T Consensus        81 v~~   83 (243)
T PRK07102         81 LIA   83 (243)
T ss_pred             EEC
Confidence            975

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=86.04  E-value=7.5  Score=33.43  Aligned_cols=90  Identities=16%  Similarity=0.097  Sum_probs=52.3

Q ss_pred             CeEEEEcCCCChHHHHHH--HHCCCCEEEEEeCCHHHHHHHHHHHHHc----------CC----------CCEEEEEccc
Q 026122           77 LKLVDVGTGAGLPGLVLA--IACPDWKVTLLESMNKRCVFLEHAVSLT----------QL----------LNVQIVRGRA  134 (243)
Q Consensus        77 ~~VLDiGcG~G~~~~~la--~~~~~~~v~~vD~s~~~~~~a~~~~~~~----------~~----------~~v~~~~~d~  134 (243)
                      .+|.=||+|+  ++..+|  ....+.+|+.+|.+++.++.+++.+++.          +.          .++.+ ..+.
T Consensus         4 ~~I~ViGaG~--mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~-~~~~   80 (291)
T PRK06035          4 KVIGVVGSGV--MGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRT-STSY   80 (291)
T ss_pred             cEEEEECccH--HHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEe-eCCH
Confidence            3677778873  332222  2234679999999999988765543321          11          01111 1122


Q ss_pred             cccccCCcCCCCceEEEEcCccc---HHHHHHHHccCcccCeEEE
Q 026122          135 ETLGKDVSFREQYDVAVARAVAE---MRILAEYCLPLVRVGGLFV  176 (243)
Q Consensus       135 ~~~~~~~~~~~~fD~I~~~~~~~---~~~~l~~~~~~LkpgG~l~  176 (243)
                      ..+       ...|+|+.....+   ...+++++.+.++++..++
T Consensus        81 ~~~-------~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~  118 (291)
T PRK06035         81 ESL-------SDADFIVEAVPEKLDLKRKVFAELERNVSPETIIA  118 (291)
T ss_pred             HHh-------CCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEE
Confidence            111       4579998765443   4677888888888876544

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=85.96  E-value=6.1  Score=34.95  Aligned_cols=97  Identities=11%  Similarity=-0.004  Sum_probs=54.4

Q ss_pred             CCCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcc-----ccc-cccCCcCCC
Q 026122           73 CNSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGR-----AET-LGKDVSFRE  145 (243)
Q Consensus        73 ~~~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d-----~~~-~~~~~~~~~  145 (243)
                      +.++.+||=.|+| .|..++.+|+..+..+|+++|.+++..+.+    +++|...  ++..+     ..+ +...  ..+
T Consensus       185 ~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~----~~~Ga~~--~i~~~~~~~~~~~~v~~~--~~~  256 (369)
T cd08301         185 VKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQA----KKFGVTE--FVNPKDHDKPVQEVIAEM--TGG  256 (369)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH----HHcCCce--EEcccccchhHHHHHHHH--hCC
Confidence            3558899888864 233345556665433899999998866655    3455432  22111     111 1100  013


Q ss_pred             CceEEEEcCcccHHHHHHHHccCcccC-eEEEEEe
Q 026122          146 QYDVAVARAVAEMRILAEYCLPLVRVG-GLFVAAK  179 (243)
Q Consensus       146 ~fD~I~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~  179 (243)
                      .+|+++-....  ...+..+.+.+++| |+++...
T Consensus       257 ~~d~vid~~G~--~~~~~~~~~~~~~~~g~~v~~g  289 (369)
T cd08301         257 GVDYSFECTGN--IDAMISAFECVHDGWGVTVLLG  289 (369)
T ss_pred             CCCEEEECCCC--hHHHHHHHHHhhcCCCEEEEEC
Confidence            68988864221  33445566778896 8877654

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>PRK07904 short chain dehydrogenase; Provisional

Probab=85.93  E-value=5.4  Score=33.37  Aligned_cols=78  Identities=14%  Similarity=0.072  Sum_probs=49.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHC---CCCEEEEEeCCHHH-HHHHHHHHHHcCCCCEEEEEcccccccc-----CC-cCC
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIAC---PDWKVTLLESMNKR-CVFLEHAVSLTQLLNVQIVRGRAETLGK-----DV-SFR  144 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~---~~~~v~~vD~s~~~-~~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~~-~~~  144 (243)
                      .+.+||=.|++.| +|..+++.+   ++.+|+.++.+++. ++.+.+.++..+..+++++.+|+.+...     .. ...
T Consensus         7 ~~~~vlItGas~g-iG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~   85 (253)
T PRK07904          7 NPQTILLLGGTSE-IGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFAG   85 (253)
T ss_pred             CCcEEEEEcCCcH-HHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHhc
Confidence            3678999999655 555666542   34799999988764 5544444555444468889898865331     00 001


Q ss_pred             CCceEEEEc
Q 026122          145 EQYDVAVAR  153 (243)
Q Consensus       145 ~~fD~I~~~  153 (243)
                      +..|+++.+
T Consensus        86 g~id~li~~   94 (253)
T PRK07904         86 GDVDVAIVA   94 (253)
T ss_pred             CCCCEEEEe
Confidence            468988865

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=85.89  E-value=6.6  Score=34.01  Aligned_cols=105  Identities=17%  Similarity=0.237  Sum_probs=62.7

Q ss_pred             CCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC--cccHHH
Q 026122           85 GAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA--VAEMRI  160 (243)
Q Consensus        85 G~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~--~~~~~~  160 (243)
                      |.|..+..+|...  .+..|+..|.+++..   .+.....|.   +......+..       ...|+|++.-  ......
T Consensus         7 GLG~MG~pmA~~L~~aG~~v~v~~r~~~ka---~~~~~~~Ga---~~a~s~~eaa-------~~aDvVitmv~~~~~V~~   73 (286)
T COG2084           7 GLGIMGSPMAANLLKAGHEVTVYNRTPEKA---AELLAAAGA---TVAASPAEAA-------AEADVVITMLPDDAAVRA   73 (286)
T ss_pred             cCchhhHHHHHHHHHCCCEEEEEeCChhhh---hHHHHHcCC---cccCCHHHHH-------HhCCEEEEecCCHHHHHH
Confidence            5566676777643  468999999998752   233333343   2222221111       4689998742  234455


Q ss_pred             HH---HHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeE
Q 026122          161 LA---EYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQ  203 (243)
Q Consensus       161 ~l---~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~  203 (243)
                      ++   .-+...++||..++- .+.......+++.+.++..|+..++
T Consensus        74 V~~g~~g~~~~~~~G~i~ID-mSTisp~~a~~~a~~~~~~G~~~lD  118 (286)
T COG2084          74 VLFGENGLLEGLKPGAIVID-MSTISPETARELAAALAAKGLEFLD  118 (286)
T ss_pred             HHhCccchhhcCCCCCEEEE-CCCCCHHHHHHHHHHHHhcCCcEEe
Confidence            55   345667778877554 4445556667777888899986654

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=85.79  E-value=6.2  Score=37.82  Aligned_cols=94  Identities=15%  Similarity=0.032  Sum_probs=55.3

Q ss_pred             CeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCc-CCCCceEEEEc
Q 026122           77 LKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-FREQYDVAVAR  153 (243)
Q Consensus        77 ~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~-~~~~fD~I~~~  153 (243)
                      .+|+=+|  .|..+..+++..  .+.+++.+|.|++.++.+++    .   ...++.+|..+...... .-++.|.+++.
T Consensus       401 ~~vII~G--~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~---g~~v~~GDat~~~~L~~agi~~A~~vv~~  471 (601)
T PRK03659        401 PQVIIVG--FGRFGQVIGRLLMANKMRITVLERDISAVNLMRK----Y---GYKVYYGDATQLELLRAAGAEKAEAIVIT  471 (601)
T ss_pred             CCEEEec--CchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----C---CCeEEEeeCCCHHHHHhcCCccCCEEEEE
Confidence            4565555  556666666532  45799999999998776654    2   35789999887532210 01468888874


Q ss_pred             Cccc-HHHHHHHHccCcccCeEEEEEe
Q 026122          154 AVAE-MRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       154 ~~~~-~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      ...+ -...+-...+.+.|...++...
T Consensus       472 ~~d~~~n~~i~~~~r~~~p~~~IiaRa  498 (601)
T PRK03659        472 CNEPEDTMKIVELCQQHFPHLHILARA  498 (601)
T ss_pred             eCCHHHHHHHHHHHHHHCCCCeEEEEe
Confidence            3222 1212222344466777766543

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=85.46  E-value=3.6  Score=36.10  Aligned_cols=93  Identities=18%  Similarity=0.248  Sum_probs=63.0

Q ss_pred             CCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           76 NLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        76 ~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      +.+|.=||-| .|..+..+|.- -++.|+-+|+|.+.+......   .+ .+++.+..+...+....   .+.|++|..-
T Consensus       168 ~~kv~iiGGGvvgtnaAkiA~g-lgA~Vtild~n~~rl~~ldd~---f~-~rv~~~~st~~~iee~v---~~aDlvIgaV  239 (371)
T COG0686         168 PAKVVVLGGGVVGTNAAKIAIG-LGADVTILDLNIDRLRQLDDL---FG-GRVHTLYSTPSNIEEAV---KKADLVIGAV  239 (371)
T ss_pred             CccEEEECCccccchHHHHHhc-cCCeeEEEecCHHHHhhhhHh---hC-ceeEEEEcCHHHHHHHh---hhccEEEEEE
Confidence            5677888888 46666555544 368999999998765544332   22 24777777776665432   5799999742


Q ss_pred             ----cccHHHHHHHHccCcccCeEEE
Q 026122          155 ----VAEMRILAEYCLPLVRVGGLFV  176 (243)
Q Consensus       155 ----~~~~~~~l~~~~~~LkpgG~l~  176 (243)
                          -..+.-+.+++...+|||+.++
T Consensus       240 LIpgakaPkLvt~e~vk~MkpGsViv  265 (371)
T COG0686         240 LIPGAKAPKLVTREMVKQMKPGSVIV  265 (371)
T ss_pred             EecCCCCceehhHHHHHhcCCCcEEE
Confidence                2345666677788999999877

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=85.37  E-value=8.4  Score=33.06  Aligned_cols=101  Identities=14%  Similarity=0.148  Sum_probs=56.0

Q ss_pred             eEEEEcCCCChHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHc-------C-C---------CCEEEEEccccccc
Q 026122           78 KLVDVGTGAGLPGLVLAIA--CPDWKVTLLESMNKRCVFLEHAVSLT-------Q-L---------LNVQIVRGRAETLG  138 (243)
Q Consensus        78 ~VLDiGcG~G~~~~~la~~--~~~~~v~~vD~s~~~~~~a~~~~~~~-------~-~---------~~v~~~~~d~~~~~  138 (243)
                      +|.=||+|  .++..+|..  ..+.+|+.+|.+++.++.+.+.....       + +         .++++ ..+..+..
T Consensus         3 ~V~VIG~G--~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~~   79 (288)
T PRK09260          3 KLVVVGAG--VMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY-SLDLKAAV   79 (288)
T ss_pred             EEEEECcc--HHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCcHHHhh
Confidence            56667775  344334332  23679999999999988776543221       1 1         01221 22332211


Q ss_pred             cCCcCCCCceEEEEcCccc---HHHHHHHHccCcccCeEEEEEeCCCcHHHH
Q 026122          139 KDVSFREQYDVAVARAVAE---MRILAEYCLPLVRVGGLFVAAKGHDPQEEV  187 (243)
Q Consensus       139 ~~~~~~~~fD~I~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~  187 (243)
                            ...|+|+.....+   ...++..+.+.++++..+....+.-...++
T Consensus        80 ------~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l  125 (288)
T PRK09260         80 ------ADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEI  125 (288)
T ss_pred             ------cCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHH
Confidence                  4579999654333   346677777888887665554444333333

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=85.21  E-value=7.8  Score=34.24  Aligned_cols=96  Identities=20%  Similarity=0.207  Sum_probs=53.2

Q ss_pred             CCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEE
Q 026122           74 NSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        74 ~~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      .++.+|+=.|+| .|..++.+|+.. +.+|++++.+++..+.+   .+.+|... .+...+...+...   ...+|+++-
T Consensus       179 ~~g~~vlV~G~G~vG~~av~~Ak~~-G~~vi~~~~~~~~~~~~---~~~~Ga~~-~i~~~~~~~~~~~---~~~~D~vid  250 (357)
T PLN02514        179 QSGLRGGILGLGGVGHMGVKIAKAM-GHHVTVISSSDKKREEA---LEHLGADD-YLVSSDAAEMQEA---ADSLDYIID  250 (357)
T ss_pred             CCCCeEEEEcccHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHH---HHhcCCcE-EecCCChHHHHHh---cCCCcEEEE
Confidence            347788877764 344445566665 56889998887643332   33456532 1111111111111   135898886


Q ss_pred             cCcccHHHHHHHHccCcccCeEEEEEe
Q 026122          153 RAVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       153 ~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      ..-.  ...++.+.+.++++|+++..-
T Consensus       251 ~~g~--~~~~~~~~~~l~~~G~iv~~G  275 (357)
T PLN02514        251 TVPV--FHPLEPYLSLLKLDGKLILMG  275 (357)
T ss_pred             CCCc--hHHHHHHHHHhccCCEEEEEC
Confidence            4321  234556667899999977643

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=85.18  E-value=11  Score=32.19  Aligned_cols=93  Identities=16%  Similarity=0.171  Sum_probs=51.8

Q ss_pred             eEEEEcCCCChHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcc----ccccccCCcCCCCceEEE
Q 026122           78 KLVDVGTGAGLPGLVLAIA--CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGR----AETLGKDVSFREQYDVAV  151 (243)
Q Consensus        78 ~VLDiGcG~G~~~~~la~~--~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d----~~~~~~~~~~~~~fD~I~  151 (243)
                      +|+=+|+|.-  |..+|..  ..+.+|+.++.+++.++..++    .++. +.  .++    .......... ..+|+|+
T Consensus         2 ~I~IiG~G~~--G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~----~g~~-~~--~~~~~~~~~~~~~~~~~-~~~d~vi   71 (304)
T PRK06522          2 KIAILGAGAI--GGLFGAALAQAGHDVTLVARRGAHLDALNE----NGLR-LE--DGEITVPVLAADDPAEL-GPQDLVI   71 (304)
T ss_pred             EEEEECCCHH--HHHHHHHHHhCCCeEEEEECChHHHHHHHH----cCCc-cc--CCceeecccCCCChhHc-CCCCEEE
Confidence            4667787643  3333332  235799999998765544432    2331 10  111    0001100011 5689988


Q ss_pred             EcC-cccHHHHHHHHccCcccCeEEEEEeC
Q 026122          152 ARA-VAEMRILAEYCLPLVRVGGLFVAAKG  180 (243)
Q Consensus       152 ~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~  180 (243)
                      ... ......+++.+...+.++..++....
T Consensus        72 la~k~~~~~~~~~~l~~~l~~~~~iv~~~n  101 (304)
T PRK06522         72 LAVKAYQLPAALPSLAPLLGPDTPVLFLQN  101 (304)
T ss_pred             EecccccHHHHHHHHhhhcCCCCEEEEecC
Confidence            754 33578888888888888777665553

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=84.96  E-value=5.4  Score=34.39  Aligned_cols=90  Identities=11%  Similarity=0.084  Sum_probs=50.8

Q ss_pred             CCeEEEEcCC--CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122           76 NLKLVDVGTG--AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        76 ~~~VLDiGcG--~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      ..+|+=+|.|  -|.++..+........|++.|.+...++.+    ..+|+.+ + ...+.....     ....|+|+..
T Consensus         3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a----~~lgv~d-~-~~~~~~~~~-----~~~aD~Viva   71 (279)
T COG0287           3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAA----LELGVID-E-LTVAGLAEA-----AAEADLVIVA   71 (279)
T ss_pred             CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHH----hhcCccc-c-cccchhhhh-----cccCCEEEEe
Confidence            3577778866  233344444333445678888887533332    2344321 1 111110111     1458988864


Q ss_pred             -CcccHHHHHHHHccCcccCeEEE
Q 026122          154 -AVAEMRILAEYCLPLVRVGGLFV  176 (243)
Q Consensus       154 -~~~~~~~~l~~~~~~LkpgG~l~  176 (243)
                       .+.....+++++.+.|++|..+.
T Consensus        72 vPi~~~~~~l~~l~~~l~~g~iv~   95 (279)
T COG0287          72 VPIEATEEVLKELAPHLKKGAIVT   95 (279)
T ss_pred             ccHHHHHHHHHHhcccCCCCCEEE
Confidence             35667889999999999987644

>PRK07326 short chain dehydrogenase; Provisional

Probab=84.82  E-value=5.5  Score=32.48  Aligned_cols=76  Identities=17%  Similarity=0.043  Sum_probs=47.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC-------cCCCC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------SFREQ  146 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-------~~~~~  146 (243)
                      +.+||=+|+ +|.+|..+++..  .+.+|++++.++.......+.....  ..+.++.+|+.+.....       ...+.
T Consensus         6 ~~~ilItGa-tg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   82 (237)
T PRK07326          6 GKVALITGG-SKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK--GNVLGLAADVRDEADVQRAVDAIVAAFGG   82 (237)
T ss_pred             CCEEEEECC-CCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc--CcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            578898885 666666666543  3679999999886555444433322  34788888876532100       00136


Q ss_pred             ceEEEEcC
Q 026122          147 YDVAVARA  154 (243)
Q Consensus       147 fD~I~~~~  154 (243)
                      .|.|+.++
T Consensus        83 ~d~vi~~a   90 (237)
T PRK07326         83 LDVLIANA   90 (237)
T ss_pred             CCEEEECC
Confidence            89888653

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=84.75  E-value=3.6  Score=32.01  Aligned_cols=94  Identities=18%  Similarity=0.203  Sum_probs=57.5

Q ss_pred             EEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC-CC------CEEEEEccccccccCCcCCCCceEEE
Q 026122           79 LVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ-LL------NVQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        79 VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~------~v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      |.=+|+|++..++.......+.+|+....+++.++..++.-.... +.      ++.+ ..|+++..      ...|+|+
T Consensus         2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~------~~ad~Ii   74 (157)
T PF01210_consen    2 IAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEAL------EDADIII   74 (157)
T ss_dssp             EEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHH------TT-SEEE
T ss_pred             EEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHh------CcccEEE
Confidence            455777777655444444456799999999987776665433111 11      3432 44554432      4579888


Q ss_pred             EcC-cccHHHHHHHHccCcccCeEEEEEe
Q 026122          152 ARA-VAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       152 ~~~-~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      ..- ....+.+++.+...++++-.++...
T Consensus        75 iavPs~~~~~~~~~l~~~l~~~~~ii~~~  103 (157)
T PF01210_consen   75 IAVPSQAHREVLEQLAPYLKKGQIIISAT  103 (157)
T ss_dssp             E-S-GGGHHHHHHHHTTTSHTT-EEEETS
T ss_pred             ecccHHHHHHHHHHHhhccCCCCEEEEec
Confidence            754 3357899999999998876655433

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family

Probab=84.66  E-value=4.1  Score=36.00  Aligned_cols=97  Identities=18%  Similarity=0.140  Sum_probs=54.3

Q ss_pred             CCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccc----cccCCcCCCCce
Q 026122           74 NSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAET----LGKDVSFREQYD  148 (243)
Q Consensus        74 ~~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~----~~~~~~~~~~fD  148 (243)
                      .++.+||=.|+| .|..++.+|+..+...|++++.+++..+.++    ..+..  .++..+-.+    +... .....+|
T Consensus       186 ~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~----~~g~~--~v~~~~~~~~~~~l~~~-~~~~~~d  258 (367)
T cd08263         186 RPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAK----ELGAT--HTVNAAKEDAVAAIREI-TGGRGVD  258 (367)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH----HhCCc--eEecCCcccHHHHHHHH-hCCCCCC
Confidence            346777766654 3334455566654334999999887655543    34442  222221111    1100 0014599


Q ss_pred             EEEEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122          149 VAVARAVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       149 ~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      +|+......  ..++.+.+.|+++|.++...
T Consensus       259 ~vld~vg~~--~~~~~~~~~l~~~G~~v~~g  287 (367)
T cd08263         259 VVVEALGKP--ETFKLALDVVRDGGRAVVVG  287 (367)
T ss_pred             EEEEeCCCH--HHHHHHHHHHhcCCEEEEEc
Confidence            999643221  35677788999999987653

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu

>PRK08324 short chain dehydrogenase; Validated

Probab=84.62  E-value=11  Score=36.65  Aligned_cols=102  Identities=13%  Similarity=-0.023  Sum_probs=60.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC-------cCCCC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------SFREQ  146 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-------~~~~~  146 (243)
                      +++||=.|++. .+|..+++..  .+.+|+++|.++...+.+.......  .++.++.+|+.+.....       ...+.
T Consensus       422 gk~vLVTGasg-gIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~--~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~  498 (681)
T PRK08324        422 GKVALVTGAAG-GIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP--DRALGVACDVTDEAAVQAAFEEAALAFGG  498 (681)
T ss_pred             CCEEEEecCCC-HHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc--CcEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            57888888754 4555555432  3679999999987665544433222  35778888876532100       00146


Q ss_pred             ceEEEEcCcc-----------------------cHHHHHHHHccCccc---CeEEEEEeC
Q 026122          147 YDVAVARAVA-----------------------EMRILAEYCLPLVRV---GGLFVAAKG  180 (243)
Q Consensus       147 fD~I~~~~~~-----------------------~~~~~l~~~~~~Lkp---gG~l~~~~~  180 (243)
                      .|+|+.++..                       ....+++.+.+.+++   +|.+++..+
T Consensus       499 iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS  558 (681)
T PRK08324        499 VDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIAS  558 (681)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence            8999986520                       023445566666665   678776653

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=84.51  E-value=8.6  Score=33.26  Aligned_cols=111  Identities=13%  Similarity=0.079  Sum_probs=61.3

Q ss_pred             eEEEEcCCCChHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122           78 KLVDVGTGAGLPGLVLAIA--CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-  154 (243)
Q Consensus        78 ~VLDiGcG~G~~~~~la~~--~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~-  154 (243)
                      +|-=||+|.  .+..++..  ..+.+|++.|.+++.++.+++    .+..   . ..+..++...   ....|+|+..- 
T Consensus         2 ~Ig~IGlG~--mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~----~g~~---~-~~s~~~~~~~---~~~~dvIi~~vp   68 (298)
T TIGR00872         2 QLGLIGLGR--MGANIVRRLAKRGHDCVGYDHDQDAVKAMKE----DRTT---G-VANLRELSQR---LSAPRVVWVMVP   68 (298)
T ss_pred             EEEEEcchH--HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----cCCc---c-cCCHHHHHhh---cCCCCEEEEEcC
Confidence            345567654  44444432  346799999999976554432    2321   1 1233332211   03469888743 


Q ss_pred             cccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeee
Q 026122          155 VAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLL  202 (243)
Q Consensus       155 ~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~  202 (243)
                      ......+++.+...|++|-. ++..+........+..+.++..|...+
T Consensus        69 ~~~~~~v~~~l~~~l~~g~i-vid~st~~~~~t~~~~~~~~~~g~~~v  115 (298)
T TIGR00872        69 HGIVDAVLEELAPTLEKGDI-VIDGGNSYYKDSLRRYKLLKEKGIHLL  115 (298)
T ss_pred             chHHHHHHHHHHhhCCCCCE-EEECCCCCcccHHHHHHHHHhcCCeEE
Confidence            22567778888888888744 444443333344445556667776543

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=84.45  E-value=6  Score=34.37  Aligned_cols=96  Identities=8%  Similarity=0.037  Sum_probs=54.5

Q ss_pred             CCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccC-CcCCCCceEEE
Q 026122           74 NSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD-VSFREQYDVAV  151 (243)
Q Consensus        74 ~~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~~~fD~I~  151 (243)
                      .++.+||=.||| .|..++.+|+.. +.+|+.++.+++..+.++    ++|.+.  ++...-.++... ... ..+|+++
T Consensus       162 ~~~~~vlV~g~g~iG~~~~~~a~~~-G~~vi~~~~~~~~~~~~~----~~g~~~--~i~~~~~~~~~~~~~~-~~~d~vi  233 (333)
T cd08296         162 KPGDLVAVQGIGGLGHLAVQYAAKM-GFRTVAISRGSDKADLAR----KLGAHH--YIDTSKEDVAEALQEL-GGAKLIL  233 (333)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHH----HcCCcE--EecCCCccHHHHHHhc-CCCCEEE
Confidence            347788888854 233344556554 568999999987655553    345422  222111111100 001 3489998


Q ss_pred             EcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122          152 ARAVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       152 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      .....  ...+..+.+.|+++|.++...
T Consensus       234 ~~~g~--~~~~~~~~~~l~~~G~~v~~g  259 (333)
T cd08296         234 ATAPN--AKAISALVGGLAPRGKLLILG  259 (333)
T ss_pred             ECCCc--hHHHHHHHHHcccCCEEEEEe
Confidence            64211  345666778899999977643

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=84.37  E-value=12  Score=32.16  Aligned_cols=103  Identities=11%  Similarity=0.104  Sum_probs=58.6

Q ss_pred             CeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc-------C-C---------CCEEEEEcccccccc
Q 026122           77 LKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT-------Q-L---------LNVQIVRGRAETLGK  139 (243)
Q Consensus        77 ~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~-~---------~~v~~~~~d~~~~~~  139 (243)
                      .+|-=||+|+=..++.......+.+|+.+|.+++.++.+++.+++.       | +         .+++ ...|.+.+  
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~-~~~~~~~~--   82 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLR-FTTDLGDF--   82 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeE-eeCCHHHh--
Confidence            3777888874222233333345789999999999988766554321       1 1         1121 22333222  


Q ss_pred             CCcCCCCceEEEEcCccc---HHHHHHHHccCc-ccCeEEEEEeCCCcHHHH
Q 026122          140 DVSFREQYDVAVARAVAE---MRILAEYCLPLV-RVGGLFVAAKGHDPQEEV  187 (243)
Q Consensus       140 ~~~~~~~fD~I~~~~~~~---~~~~l~~~~~~L-kpgG~l~~~~~~~~~~~~  187 (243)
                           ...|+|+-....+   -..++..+.+.+ +|+..+.-.++.....++
T Consensus        83 -----~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~l  129 (286)
T PRK07819         83 -----ADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKL  129 (286)
T ss_pred             -----CCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHH
Confidence                 4589999754333   356777777777 667554443343343433

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=84.24  E-value=4.1  Score=38.57  Aligned_cols=93  Identities=14%  Similarity=0.026  Sum_probs=53.9

Q ss_pred             CeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCc-CCCCceEEEEc
Q 026122           77 LKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-FREQYDVAVAR  153 (243)
Q Consensus        77 ~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~-~~~~fD~I~~~  153 (243)
                      .+|+=+|||  ..+..+++..  .+.+|+.+|.+++.++.+++    .   +...+.+|..+...... .-+++|.+++.
T Consensus       418 ~hiiI~G~G--~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~----~---g~~~i~GD~~~~~~L~~a~i~~a~~viv~  488 (558)
T PRK10669        418 NHALLVGYG--RVGSLLGEKLLAAGIPLVVIETSRTRVDELRE----R---GIRAVLGNAANEEIMQLAHLDCARWLLLT  488 (558)
T ss_pred             CCEEEECCC--hHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH----C---CCeEEEcCCCCHHHHHhcCccccCEEEEE
Confidence            456665555  5566666543  35789999999987666643    2   46799999887432110 01578977653


Q ss_pred             CcccHH--HHHHHHccCcccCeEEEEEe
Q 026122          154 AVAEMR--ILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       154 ~~~~~~--~~l~~~~~~LkpgG~l~~~~  179 (243)
                      ...+.+  .+... .+...|+-.++...
T Consensus       489 ~~~~~~~~~iv~~-~~~~~~~~~iiar~  515 (558)
T PRK10669        489 IPNGYEAGEIVAS-AREKRPDIEIIARA  515 (558)
T ss_pred             cCChHHHHHHHHH-HHHHCCCCeEEEEE
Confidence            222211  23333 34446766666543

>PRK07454 short chain dehydrogenase; Provisional

Probab=84.06  E-value=8.7  Score=31.48  Aligned_cols=77  Identities=14%  Similarity=0.072  Sum_probs=48.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCc-------CCCC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-------FREQ  146 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~-------~~~~  146 (243)
                      .+++|=.|+ +|.++..+++..  .+.+|++++.+++..+...+..+..+ .++.++.+|+.+......       ..++
T Consensus         6 ~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   83 (241)
T PRK07454          6 MPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTG-VKAAAYSIDLSNPEAIAPGIAELLEQFGC   83 (241)
T ss_pred             CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCC-CcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            567888885 566666666543  46799999999876655444444333 257888898876431100       0135


Q ss_pred             ceEEEEcC
Q 026122          147 YDVAVARA  154 (243)
Q Consensus       147 fD~I~~~~  154 (243)
                      .|.++.++
T Consensus        84 id~lv~~a   91 (241)
T PRK07454         84 PDVLINNA   91 (241)
T ss_pred             CCEEEECC
Confidence            79998754

>PRK09291 short chain dehydrogenase; Provisional

Probab=83.64  E-value=6  Score=32.72  Aligned_cols=77  Identities=14%  Similarity=0.117  Sum_probs=48.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC-cCCCCceEEEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIA--CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-SFREQYDVAVA  152 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~--~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-~~~~~fD~I~~  152 (243)
                      +.+||=.|++.| ++..+++.  ..+++|++++.++...+..+......+. ++.++.+|+.+..... ......|+|+.
T Consensus         2 ~~~vlVtGasg~-iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~id~vi~   79 (257)
T PRK09291          2 SKTILITGAGSG-FGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGL-ALRVEKLDLTDAIDRAQAAEWDVDVLLN   79 (257)
T ss_pred             CCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cceEEEeeCCCHHHHHHHhcCCCCEEEE
Confidence            357888887554 55555543  2468999999987766555554444443 4788888887642110 01137899998


Q ss_pred             cC
Q 026122          153 RA  154 (243)
Q Consensus       153 ~~  154 (243)
                      ++
T Consensus        80 ~a   81 (257)
T PRK09291         80 NA   81 (257)
T ss_pred             CC
Confidence            64

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=83.58  E-value=5.2  Score=34.61  Aligned_cols=94  Identities=13%  Similarity=0.010  Sum_probs=50.5

Q ss_pred             CCeEEEE--cCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccc---cCCcCCCCceE
Q 026122           76 NLKLVDV--GTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLG---KDVSFREQYDV  149 (243)
Q Consensus        76 ~~~VLDi--GcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---~~~~~~~~fD~  149 (243)
                      +.+++=+  |+| .|..++.+|+.. +.+|++++.+++..+.+++    +|.+.  ++..+-.++.   ........+|+
T Consensus       143 ~~~vlv~~~g~g~vG~~a~q~a~~~-G~~vi~~~~~~~~~~~~~~----~g~~~--~i~~~~~~~~~~v~~~~~~~~~d~  215 (324)
T cd08291         143 GAKAVVHTAAASALGRMLVRLCKAD-GIKVINIVRRKEQVDLLKK----IGAEY--VLNSSDPDFLEDLKELIAKLNATI  215 (324)
T ss_pred             CCcEEEEccCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH----cCCcE--EEECCCccHHHHHHHHhCCCCCcE
Confidence            4455544  332 444455566664 6789999999876666543    55432  2222111110   00000135899


Q ss_pred             EEEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122          150 AVARAVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       150 I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      ++-....   .......+.++++|+++...
T Consensus       216 vid~~g~---~~~~~~~~~l~~~G~~v~~g  242 (324)
T cd08291         216 FFDAVGG---GLTGQILLAMPYGSTLYVYG  242 (324)
T ss_pred             EEECCCc---HHHHHHHHhhCCCCEEEEEE
Confidence            9864322   12234567789999987654

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase

Probab=83.53  E-value=4.9  Score=35.46  Aligned_cols=98  Identities=13%  Similarity=0.119  Sum_probs=56.8

Q ss_pred             CCCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccc----cccCCcCCCCc
Q 026122           73 CNSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAET----LGKDVSFREQY  147 (243)
Q Consensus        73 ~~~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~----~~~~~~~~~~f  147 (243)
                      +.++.+||-.|+| .|..++.+++..+..+|++++.++...+.++    ..+..  .++..+-.+    +... .....+
T Consensus       180 ~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~----~~g~~--~vv~~~~~~~~~~l~~~-~~~~~v  252 (363)
T cd08279         180 VRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELAR----RFGAT--HTVNASEDDAVEAVRDL-TDGRGA  252 (363)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHH----HhCCe--EEeCCCCccHHHHHHHH-cCCCCC
Confidence            3457888888775 3555566776654335999999887655543    34442  222221111    1100 001469


Q ss_pred             eEEEEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122          148 DVAVARAVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       148 D~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      |+++.....  ...+..+.+.|+++|+++...
T Consensus       253 d~vld~~~~--~~~~~~~~~~l~~~G~~v~~g  282 (363)
T cd08279         253 DYAFEAVGR--AATIRQALAMTRKGGTAVVVG  282 (363)
T ss_pred             CEEEEcCCC--hHHHHHHHHHhhcCCeEEEEe
Confidence            999864322  245667788899999987653

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me

>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown

Probab=83.40  E-value=3.1  Score=31.42  Aligned_cols=87  Identities=16%  Similarity=0.082  Sum_probs=42.6

Q ss_pred             CCeEEEEcCCCCh-HHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc-
Q 026122           76 NLKLVDVGTGAGL-PGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR-  153 (243)
Q Consensus        76 ~~~VLDiGcG~G~-~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~-  153 (243)
                      ..+|+++|-|.=. .+..|+..  +..|+++|+++.       ++. .|   +.++..|+.+-...  .-...|+|.|- 
T Consensus        14 ~~kiVEVGiG~~~~vA~~L~~~--G~dV~~tDi~~~-------~a~-~g---~~~v~DDif~P~l~--iY~~a~lIYSiR   78 (127)
T PF03686_consen   14 YGKIVEVGIGFNPEVAKKLKER--GFDVIATDINPR-------KAP-EG---VNFVVDDIFNPNLE--IYEGADLIYSIR   78 (127)
T ss_dssp             SSEEEEET-TT--HHHHHHHHH--S-EEEEE-SS-S------------S---TTEE---SSS--HH--HHTTEEEEEEES
T ss_pred             CCcEEEECcCCCHHHHHHHHHc--CCcEEEEECccc-------ccc-cC---cceeeecccCCCHH--HhcCCcEEEEeC
Confidence            4599999999755 44455544  589999999985       222 33   56888898874321  12468999984 


Q ss_pred             CcccHHHHHHHHccCcccCeEEEEEe
Q 026122          154 AVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       154 ~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      ...++...+-.+.+.+  |.-+++..
T Consensus        79 PP~El~~~il~lA~~v--~adlii~p  102 (127)
T PF03686_consen   79 PPPELQPPILELAKKV--GADLIIRP  102 (127)
T ss_dssp             --TTSHHHHHHHHHHH--T-EEEEE-
T ss_pred             CChHHhHHHHHHHHHh--CCCEEEEC
Confidence            3334443333344333  44555543

; PDB: 2K4M_A.

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=83.04  E-value=17  Score=34.05  Aligned_cols=119  Identities=10%  Similarity=0.051  Sum_probs=68.5

Q ss_pred             eEEEEcCCCChHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122           78 KLVDVGTGAGLPGLVLAIA--CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-  154 (243)
Q Consensus        78 ~VLDiGcG~G~~~~~la~~--~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~-  154 (243)
                      +|==||.  |..+..+|+.  ..+.+|+..|.+++.++...+.....|..++ ....+..++....   ...|+|++.- 
T Consensus         8 ~IG~IGL--G~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~-~~a~s~~e~v~~l---~~~dvIi~~v~   81 (493)
T PLN02350          8 RIGLAGL--AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPL-YGFKDPEDFVLSI---QKPRSVIILVK   81 (493)
T ss_pred             CEEEEee--HHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCccc-ccCCCHHHHHhcC---CCCCEEEEECC
Confidence            3444444  4555555543  2468999999998876654432211232111 1233455543211   3479888742 


Q ss_pred             -cccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeE
Q 026122          155 -VAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQ  203 (243)
Q Consensus       155 -~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~  203 (243)
                       ....+.+++.+...|++|- +++-.+....+...+..+.++..|...+.
T Consensus        82 ~~~aV~~Vi~gl~~~l~~G~-iiID~sT~~~~~t~~~~~~l~~~Gi~fld  130 (493)
T PLN02350         82 AGAPVDQTIKALSEYMEPGD-CIIDGGNEWYENTERRIKEAAEKGLLYLG  130 (493)
T ss_pred             CcHHHHHHHHHHHhhcCCCC-EEEECCCCCHHHHHHHHHHHHHcCCeEEe
Confidence             3345667777778888864 45555555556666667777888876554

>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=82.98  E-value=11  Score=31.88  Aligned_cols=98  Identities=18%  Similarity=0.139  Sum_probs=52.6

Q ss_pred             CCCCCeEEEEcCC--CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEE
Q 026122           73 CNSNLKLVDVGTG--AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVA  150 (243)
Q Consensus        73 ~~~~~~VLDiGcG--~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I  150 (243)
                      +.++.+|+-.|+.  .|...+.+|+.. +++|++++.+ ...+.    ++..+...  ++..+-.++.......+.+|+|
T Consensus       141 ~~~g~~vli~g~~g~~g~~~~~la~~~-g~~v~~~~~~-~~~~~----~~~~g~~~--~~~~~~~~~~~~~~~~~~~d~v  212 (319)
T cd08267         141 VKPGQRVLINGASGGVGTFAVQIAKAL-GAHVTGVCST-RNAEL----VRSLGADE--VIDYTTEDFVALTAGGEKYDVI  212 (319)
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHc-CCEEEEEeCH-HHHHH----HHHcCCCE--eecCCCCCcchhccCCCCCcEE
Confidence            3458899999973  455666677665 5799998854 43333    34455421  1111111110000112469999


Q ss_pred             EEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122          151 VARAVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       151 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      +.............+. .++++|.++...
T Consensus       213 i~~~~~~~~~~~~~~~-~l~~~g~~i~~g  240 (319)
T cd08267         213 FDAVGNSPFSLYRASL-ALKPGGRYVSVG  240 (319)
T ss_pred             EECCCchHHHHHHhhh-ccCCCCEEEEec
Confidence            9754322233333333 389999977653

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08241 QOR1 Quinone oxidoreductase (QOR)

Probab=82.92  E-value=7.8  Score=32.73  Aligned_cols=95  Identities=17%  Similarity=0.121  Sum_probs=54.2

Q ss_pred             CCCCCeEEEEcCC--CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcccccc----ccCCcCCCC
Q 026122           73 CNSNLKLVDVGTG--AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETL----GKDVSFREQ  146 (243)
Q Consensus        73 ~~~~~~VLDiGcG--~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~----~~~~~~~~~  146 (243)
                      +.++.+|+-.||.  .|...+.+++.. +++|+.++.+++..+.++    ..+...  ++..+-.++    ... .....
T Consensus       137 ~~~~~~vli~g~~~~~g~~~~~~a~~~-g~~v~~~~~~~~~~~~~~----~~g~~~--~~~~~~~~~~~~i~~~-~~~~~  208 (323)
T cd08241         137 LQPGETVLVLGAAGGVGLAAVQLAKAL-GARVIAAASSEEKLALAR----ALGADH--VIDYRDPDLRERVKAL-TGGRG  208 (323)
T ss_pred             CCCCCEEEEEcCCchHHHHHHHHHHHh-CCEEEEEeCCHHHHHHHH----HcCCce--eeecCCccHHHHHHHH-cCCCC
Confidence            3457899999983  344444555553 678999999987666553    334422  121111111    000 00135


Q ss_pred             ceEEEEcCcccHHHHHHHHccCcccCeEEEEE
Q 026122          147 YDVAVARAVAEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       147 fD~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                      +|+++.....   ..+..+.+.++++|.++..
T Consensus       209 ~d~v~~~~g~---~~~~~~~~~~~~~g~~v~~  237 (323)
T cd08241         209 VDVVYDPVGG---DVFEASLRSLAWGGRLLVI  237 (323)
T ss_pred             cEEEEECccH---HHHHHHHHhhccCCEEEEE
Confidence            8998865322   3445667788999987654

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=82.87  E-value=4.5  Score=35.00  Aligned_cols=78  Identities=9%  Similarity=0.026  Sum_probs=46.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCC-CCEEEEEccccccccCCcCCCCceEEEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      +++||=.| |+|.+|..+++..  .+.+|+++..++.............+. .+++++.+|+.+.......-...|+|+.
T Consensus         5 ~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vih   83 (325)
T PLN02989          5 GKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVFH   83 (325)
T ss_pred             CCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEEE
Confidence            67888888 5778877777643  467888887765433222221111122 3588899998875321111135798887


Q ss_pred             cC
Q 026122          153 RA  154 (243)
Q Consensus       153 ~~  154 (243)
                      .+
T Consensus        84 ~A   85 (325)
T PLN02989         84 TA   85 (325)
T ss_pred             eC
Confidence            54

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=82.85  E-value=26  Score=32.57  Aligned_cols=120  Identities=14%  Similarity=0.133  Sum_probs=66.9

Q ss_pred             eEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc--Cc
Q 026122           78 KLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR--AV  155 (243)
Q Consensus        78 ~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~--~~  155 (243)
                      +|-=||.|.-.-++.......+.+|++.|.+++.++...+.....+. +++ ...++.++....   ...|+|+..  ..
T Consensus         3 ~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~-~i~-~~~s~~e~v~~l---~~~d~Iil~v~~~   77 (470)
T PTZ00142          3 DIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNT-RVK-GYHTLEELVNSL---KKPRKVILLIKAG   77 (470)
T ss_pred             EEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCC-cce-ecCCHHHHHhcC---CCCCEEEEEeCCh
Confidence            34556666433222222233467999999999887766554332232 122 233444443211   246866653  23


Q ss_pred             ccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeE
Q 026122          156 AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQ  203 (243)
Q Consensus       156 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~  203 (243)
                      ...+.+++.+.+.|++|-. ++-.+......-....+.+...|...+.
T Consensus        78 ~~v~~vi~~l~~~L~~g~i-IID~gn~~~~dt~~r~~~l~~~Gi~fld  124 (470)
T PTZ00142         78 EAVDETIDNLLPLLEKGDI-IIDGGNEWYLNTERRIKRCEEKGILYLG  124 (470)
T ss_pred             HHHHHHHHHHHhhCCCCCE-EEECCCCCHHHHHHHHHHHHHcCCeEEc
Confidence            3567788888888988755 4444444444444555667777875543

>PRK08703 short chain dehydrogenase; Provisional

Probab=82.76  E-value=6.9  Score=32.06  Aligned_cols=59  Identities=15%  Similarity=0.022  Sum_probs=38.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcccc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAE  135 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~  135 (243)
                      +++|+=.||+ |.+|..+++.+  .+.+|++++.++...+.....+...+-..+.++..|+.
T Consensus         6 ~k~vlItG~s-ggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~   66 (239)
T PRK08703          6 DKTILVTGAS-QGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLM   66 (239)
T ss_pred             CCEEEEECCC-CcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeec
Confidence            6789999964 55555666543  46899999999876665555544433223555666654

>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]

Probab=82.74  E-value=1.4  Score=41.77  Aligned_cols=93  Identities=13%  Similarity=0.045  Sum_probs=57.2

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcccccc----ccCCc-CCCC
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETL----GKDVS-FREQ  146 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~----~~~~~-~~~~  146 (243)
                      +.++..|||+||.+|......++..| +.-|+|||+-+-           ..+.++..++.||..-    +.... ..-+
T Consensus        42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi-----------kp~~~c~t~v~dIttd~cr~~l~k~l~t~~  110 (780)
T KOG1098|consen   42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI-----------KPIPNCDTLVEDITTDECRSKLRKILKTWK  110 (780)
T ss_pred             ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeec-----------ccCCccchhhhhhhHHHHHHHHHHHHHhCC
Confidence            35578999999999998766666665 568999998762           1223444444555431    10000 0135


Q ss_pred             ceEEEEcCccc---------------HHHHHHHHccCcccCeEEE
Q 026122          147 YDVAVARAVAE---------------MRILAEYCLPLVRVGGLFV  176 (243)
Q Consensus       147 fD~I~~~~~~~---------------~~~~l~~~~~~LkpgG~l~  176 (243)
                      .|+|+..+.++               -...++.+...|+.||.++
T Consensus       111 advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fv  155 (780)
T KOG1098|consen  111 ADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFV  155 (780)
T ss_pred             CcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccc
Confidence            69998853111               1344566778889999954

>TIGR00497 hsdM type I restriction system adenine methylase (hsdM)

Probab=82.74  E-value=42  Score=31.40  Aligned_cols=104  Identities=13%  Similarity=0.013  Sum_probs=64.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHC--C--CCEEEEEeCCHHHHHHHHHHHHHcCCC--CEEEEEccccccccCCcCCCCce
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIAC--P--DWKVTLLESMNKRCVFLEHAVSLTQLL--NVQIVRGRAETLGKDVSFREQYD  148 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~--~--~~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~~~~~~~~~~fD  148 (243)
                      +++.|.|..||+|...+......  +  ...++|-|....+..+++.+..-++..  ......+|...-+.. ....+||
T Consensus       217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~-~~~~~~D  295 (501)
T TIGR00497       217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEW-ENENGFE  295 (501)
T ss_pred             CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccc-cccccCC
Confidence            46799999999998765433321  1  256999999999999998887655542  233333433221110 0114689


Q ss_pred             EEEEcC-----c-----c-------------------cHHHHHHHHccCcccCeEEEEEe
Q 026122          149 VAVARA-----V-----A-------------------EMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       149 ~I~~~~-----~-----~-------------------~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      .|+++.     +     +                   .=..++..+...|++||+..++.
T Consensus       296 ~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~  355 (501)
T TIGR00497       296 VVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVC  355 (501)
T ss_pred             EEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEe
Confidence            888752     0     0                   01345566778899999866554

Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).

>KOG2811 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.66  E-value=8.9  Score=34.34  Aligned_cols=63  Identities=19%  Similarity=0.153  Sum_probs=44.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEE---EeCCHHHHHHHHHHHHHcCCCCEEEEEcccccccc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTL---LESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK  139 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~---vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~  139 (243)
                      +..++++|||-|.++.+++...+...++.   +|........=+...+++.. .++=+..|++++..
T Consensus       183 ~~~~vEFGAGrg~Ls~~vs~~l~~~~~~l~vlvdR~s~R~K~D~k~~~~~~~-vi~R~riDI~dLkL  248 (420)
T KOG2811|consen  183 SSCFVEFGAGRGELSRWVSDCLQIQNVYLFVLVDRKSSRLKFDRKLRNKNSL-VIKRIRIDIEDLKL  248 (420)
T ss_pred             cceEEEecCCchHHHHHHHHHhccccEEEEEeecccchhhhhhhhhhccCcc-hhheeEeeHHhcCc
Confidence            46899999999999999999888777766   88776555444443333322 25566678887654

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=82.66  E-value=8  Score=31.79  Aligned_cols=75  Identities=15%  Similarity=0.040  Sum_probs=46.5

Q ss_pred             eEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccc-------cCCcCCCCce
Q 026122           78 KLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLG-------KDVSFREQYD  148 (243)
Q Consensus        78 ~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-------~~~~~~~~fD  148 (243)
                      ++|=.| |+|.++..+++..  .+.+|++++.++...+.+....+..+ .++.++.+|+.+..       .........|
T Consensus         3 ~vlItG-a~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d   80 (255)
T TIGR01963         3 TALVTG-AASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAG-GSVIYLVADVTKEDEIADMIAAAAAEFGGLD   80 (255)
T ss_pred             EEEEcC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CceEEEECCCCCHHHHHHHHHHHHHhcCCCC
Confidence            566666 4566676776543  46799999999876555544444333 25888888887643       1000014579


Q ss_pred             EEEEcC
Q 026122          149 VAVARA  154 (243)
Q Consensus       149 ~I~~~~  154 (243)
                      .|+.++
T Consensus        81 ~vi~~a   86 (255)
T TIGR01963        81 ILVNNA   86 (255)
T ss_pred             EEEECC
Confidence            988754

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>PRK05396 tdh L-threonine 3-dehydrogenase; Validated

Probab=82.53  E-value=6.5  Score=34.22  Aligned_cols=98  Identities=13%  Similarity=0.139  Sum_probs=54.4

Q ss_pred             CCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCE-EEEEccccc-cccCCcCCCCceEEE
Q 026122           75 SNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNV-QIVRGRAET-LGKDVSFREQYDVAV  151 (243)
Q Consensus        75 ~~~~VLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~d~~~-~~~~~~~~~~fD~I~  151 (243)
                      ++.+|+-.|+|. |..++.+|+..+..+|++++.+++..+.++    .+|.+.+ .....+..+ +... .....+|+|+
T Consensus       163 ~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~----~lg~~~~~~~~~~~~~~~~~~~-~~~~~~d~v~  237 (341)
T PRK05396        163 VGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELAR----KMGATRAVNVAKEDLRDVMAEL-GMTEGFDVGL  237 (341)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH----HhCCcEEecCccccHHHHHHHh-cCCCCCCEEE
Confidence            367777777653 445556676654337888988887655544    3444321 111111111 1000 0124689998


Q ss_pred             EcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122          152 ARAVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       152 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      .....  ...+..+.+.|+++|.++...
T Consensus       238 d~~g~--~~~~~~~~~~l~~~G~~v~~g  263 (341)
T PRK05396        238 EMSGA--PSAFRQMLDNMNHGGRIAMLG  263 (341)
T ss_pred             ECCCC--HHHHHHHHHHHhcCCEEEEEe
Confidence            73322  335566777899999988764

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=82.45  E-value=9.6  Score=31.52  Aligned_cols=77  Identities=10%  Similarity=-0.069  Sum_probs=48.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccC-------CcCCCC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD-------VSFREQ  146 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-------~~~~~~  146 (243)
                      ++++|=.|++. .++..+++.+  .+++|+.++.+++.++.....++..+. ++.++.+|+.+....       ....++
T Consensus        11 ~k~ilItGas~-~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   88 (256)
T PRK06124         11 GQVALVTGSAR-GLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGG-AAEALAFDIADEEAVAAAFARIDAEHGR   88 (256)
T ss_pred             CCEEEEECCCc-hHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence            77899888654 4555666543  468999999998766655555544443 477888887663210       000146


Q ss_pred             ceEEEEcC
Q 026122          147 YDVAVARA  154 (243)
Q Consensus       147 fD~I~~~~  154 (243)
                      .|.++.++
T Consensus        89 id~vi~~a   96 (256)
T PRK06124         89 LDILVNNV   96 (256)
T ss_pred             CCEEEECC
Confidence            79898753

>PRK08339 short chain dehydrogenase; Provisional

Probab=82.41  E-value=10  Score=31.87  Aligned_cols=78  Identities=10%  Similarity=0.027  Sum_probs=49.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCc------CCCCc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS------FREQY  147 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~------~~~~f  147 (243)
                      ++++|=.|++.|. +..+++.+  .+++|+.++.+++.++.+.+..+...-.++.++.+|+.+......      ..+..
T Consensus         8 ~k~~lItGas~gI-G~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~i   86 (263)
T PRK08339          8 GKLAFTTASSKGI-GFGVARVLARAGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIGEP   86 (263)
T ss_pred             CCEEEEeCCCCcH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhCCC
Confidence            6788989988775 34444432  468999999998776655554443222357888888876421100      01468


Q ss_pred             eEEEEcC
Q 026122          148 DVAVARA  154 (243)
Q Consensus       148 D~I~~~~  154 (243)
                      |+++.++
T Consensus        87 D~lv~na   93 (263)
T PRK08339         87 DIFFFST   93 (263)
T ss_pred             cEEEECC
Confidence            9888764

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=82.15  E-value=17  Score=33.38  Aligned_cols=39  Identities=28%  Similarity=0.400  Sum_probs=27.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCCHHHHHHHH
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLE  116 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~  116 (243)
                      ..+|-=||.  |.+|+.+|... .+.+|+++|++++.++..+
T Consensus         6 ~mkI~vIGl--GyvGlpmA~~la~~~~V~g~D~~~~~ve~l~   45 (425)
T PRK15182          6 EVKIAIIGL--GYVGLPLAVEFGKSRQVVGFDVNKKRILELK   45 (425)
T ss_pred             CCeEEEECc--CcchHHHHHHHhcCCEEEEEeCCHHHHHHHH
Confidence            356666655  56666666543 2479999999999887765

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=81.94  E-value=8.3  Score=39.38  Aligned_cols=74  Identities=15%  Similarity=0.125  Sum_probs=40.7

Q ss_pred             CCeEEEEcCC-CChHHHHHHHHCCCCE-------------EEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC
Q 026122           76 NLKLVDVGTG-AGLPGLVLAIACPDWK-------------VTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV  141 (243)
Q Consensus        76 ~~~VLDiGcG-~G~~~~~la~~~~~~~-------------v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~  141 (243)
                      ..+|+=|||| .|...+......++.+             |+..|++.+..   ++.++..  .+++.+..|+.+.....
T Consensus       569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a---~~la~~~--~~~~~v~lDv~D~e~L~  643 (1042)
T PLN02819        569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDA---KETVEGI--ENAEAVQLDVSDSESLL  643 (1042)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHH---HHHHHhc--CCCceEEeecCCHHHHH
Confidence            5689999997 3554333333345544             88899997643   3333332  23445555544432111


Q ss_pred             cCCCCceEEEEcC
Q 026122          142 SFREQYDVAVARA  154 (243)
Q Consensus       142 ~~~~~fD~I~~~~  154 (243)
                      ..-...|+|++-.
T Consensus       644 ~~v~~~DaVIsal  656 (1042)
T PLN02819        644 KYVSQVDVVISLL  656 (1042)
T ss_pred             HhhcCCCEEEECC
Confidence            1013599999853

>PRK06949 short chain dehydrogenase; Provisional

Probab=81.85  E-value=10  Score=31.27  Aligned_cols=77  Identities=14%  Similarity=0.023  Sum_probs=48.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC-------cCCCC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------SFREQ  146 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-------~~~~~  146 (243)
                      +++||=.| |+|.++..+++.+  .+.+|++++.+++.++......+..+. ++.++.+|+.+.....       ...++
T Consensus         9 ~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~   86 (258)
T PRK06949          9 GKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGG-AAHVVSLDVTDYQSIKAAVAHAETEAGT   86 (258)
T ss_pred             CCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEecCCCHHHHHHHHHHHHHhcCC
Confidence            67888888 5555666666543  467999999998876655554443332 4778888876532100       00135


Q ss_pred             ceEEEEcC
Q 026122          147 YDVAVARA  154 (243)
Q Consensus       147 fD~I~~~~  154 (243)
                      .|+++.++
T Consensus        87 ~d~li~~a   94 (258)
T PRK06949         87 IDILVNNS   94 (258)
T ss_pred             CCEEEECC
Confidence            79988864

>cd05284 arabinose_DH_like D-arabinose dehydrogenase

Probab=81.76  E-value=11  Score=32.71  Aligned_cols=96  Identities=13%  Similarity=0.111  Sum_probs=53.4

Q ss_pred             CCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccc---cccccCCcCCCCceE
Q 026122           74 NSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRA---ETLGKDVSFREQYDV  149 (243)
Q Consensus        74 ~~~~~VLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~---~~~~~~~~~~~~fD~  149 (243)
                      .++.+||=.|+|+ |...+.+|+..++.+|++++.+++..+.+    +..+.+.  ++..+-   .++... .....+|+
T Consensus       166 ~~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~----~~~g~~~--~~~~~~~~~~~i~~~-~~~~~~dv  238 (340)
T cd05284         166 DPGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLA----ERLGADH--VLNASDDVVEEVREL-TGGRGADA  238 (340)
T ss_pred             CCCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHH----HHhCCcE--EEcCCccHHHHHHHH-hCCCCCCE
Confidence            4478888888553 22233445554437899999988755544    3455421  221111   111100 00135999


Q ss_pred             EEEcCcccHHHHHHHHccCcccCeEEEEE
Q 026122          150 AVARAVAEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       150 I~~~~~~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                      |+.....  ...++.+.+.|+++|+++..
T Consensus       239 vld~~g~--~~~~~~~~~~l~~~g~~i~~  265 (340)
T cd05284         239 VIDFVGS--DETLALAAKLLAKGGRYVIV  265 (340)
T ss_pred             EEEcCCC--HHHHHHHHHHhhcCCEEEEE
Confidence            9964322  34566777888999998754

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=81.63  E-value=8.5  Score=33.59  Aligned_cols=90  Identities=16%  Similarity=0.078  Sum_probs=47.1

Q ss_pred             CCeEEEEcCCCChHHHHHHH---HCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEE-ccccccccCCcCCCCceEEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAI---ACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVR-GRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~---~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~-~d~~~~~~~~~~~~~fD~I~  151 (243)
                      +.+|+=+|+|  ..+..+++   .....+|+.+|.+++..   ++.++.++.   .... .+..+..      ..+|+|+
T Consensus       178 ~~~V~ViGaG--~iG~~~a~~L~~~g~~~V~v~~r~~~ra---~~la~~~g~---~~~~~~~~~~~l------~~aDvVi  243 (311)
T cd05213         178 GKKVLVIGAG--EMGELAAKHLAAKGVAEITIANRTYERA---EELAKELGG---NAVPLDELLELL------NEADVVI  243 (311)
T ss_pred             CCEEEEECcH--HHHHHHHHHHHHcCCCEEEEEeCCHHHH---HHHHHHcCC---eEEeHHHHHHHH------hcCCEEE
Confidence            7899999885  44433333   22346899999997643   333444443   2221 1222211      4589999


Q ss_pred             EcCc-ccHHHHHHHHccCcccCeEEEEEe
Q 026122          152 ARAV-AEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       152 ~~~~-~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      +... ......++.+.+....+|.+++-.
T Consensus       244 ~at~~~~~~~~~~~~~~~~~~~~~~viDl  272 (311)
T cd05213         244 SATGAPHYAKIVERAMKKRSGKPRLIVDL  272 (311)
T ss_pred             ECCCCCchHHHHHHHHhhCCCCCeEEEEe
Confidence            8543 233344444433332245655533

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=81.42  E-value=19  Score=31.77  Aligned_cols=92  Identities=15%  Similarity=0.095  Sum_probs=53.4

Q ss_pred             CeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH-------cCC------CCEEEEEccccccccCCcC
Q 026122           77 LKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSL-------TQL------LNVQIVRGRAETLGKDVSF  143 (243)
Q Consensus        77 ~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~-------~~~------~~v~~~~~d~~~~~~~~~~  143 (243)
                      .+|-=||+|+=..++.......+.+|+..|.+++.++.++..++.       .++      .++++. .++++.      
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l~~a------   80 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATIEAC------   80 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCHHHH------
Confidence            577788887322222222223578999999999887765553321       221      112222 122221      


Q ss_pred             CCCceEEEEcCccc---HHHHHHHHccCcccCeEE
Q 026122          144 REQYDVAVARAVAE---MRILAEYCLPLVRVGGLF  175 (243)
Q Consensus       144 ~~~fD~I~~~~~~~---~~~~l~~~~~~LkpgG~l  175 (243)
                      -...|+|+-....+   -..+++.+.+.++|+..+
T Consensus        81 v~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIl  115 (321)
T PRK07066         81 VADADFIQESAPEREALKLELHERISRAAKPDAII  115 (321)
T ss_pred             hcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEE
Confidence            14579999865443   357778888888888643

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=81.42  E-value=10  Score=31.41  Aligned_cols=77  Identities=13%  Similarity=0.007  Sum_probs=49.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccC-------CcCCCC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD-------VSFREQ  146 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-------~~~~~~  146 (243)
                      +++||=.|+ +|.++..+++..  .+++|++++.++...+.....++..+. ++.++.+|+.+....       ....+.
T Consensus        10 ~k~vlItGa-~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~   87 (255)
T PRK07523         10 GRRALVTGS-SQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGL-SAHALAFDVTDHDAVRAAIDAFEAEIGP   87 (255)
T ss_pred             CCEEEEECC-cchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCc-eEEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence            678998885 566676776543  468999999998776655555544432 477788888663210       000145


Q ss_pred             ceEEEEcC
Q 026122          147 YDVAVARA  154 (243)
Q Consensus       147 fD~I~~~~  154 (243)
                      .|.++.++
T Consensus        88 ~d~li~~a   95 (255)
T PRK07523         88 IDILVNNA   95 (255)
T ss_pred             CCEEEECC
Confidence            89998864

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=81.40  E-value=9.9  Score=36.65  Aligned_cols=94  Identities=13%  Similarity=0.053  Sum_probs=54.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCc-CCCCceEEEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIA--CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-FREQYDVAVA  152 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~--~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~-~~~~fD~I~~  152 (243)
                      ..+|+=+|||  ..+..+++.  ..+.+++.+|.|++.++.+++    .   +..++.+|..+...... .-++.|++++
T Consensus       400 ~~~vII~G~G--r~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~---g~~v~~GDat~~~~L~~agi~~A~~vvv  470 (621)
T PRK03562        400 QPRVIIAGFG--RFGQIVGRLLLSSGVKMTVLDHDPDHIETLRK----F---GMKVFYGDATRMDLLESAGAAKAEVLIN  470 (621)
T ss_pred             cCcEEEEecC--hHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----c---CCeEEEEeCCCHHHHHhcCCCcCCEEEE
Confidence            3577777776  444445543  235789999999998777654    2   35789999887542210 0147888886


Q ss_pred             cCcc-cHHHHHHHHccCcccCeEEEEE
Q 026122          153 RAVA-EMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       153 ~~~~-~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                      .... +....+-...+.+.|+-.++..
T Consensus       471 ~~~d~~~n~~i~~~ar~~~p~~~iiaR  497 (621)
T PRK03562        471 AIDDPQTSLQLVELVKEHFPHLQIIAR  497 (621)
T ss_pred             EeCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence            4322 2222222233344566555543

>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)

Probab=81.38  E-value=7  Score=27.81  Aligned_cols=66  Identities=14%  Similarity=0.111  Sum_probs=41.3

Q ss_pred             EcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCcccHHHH
Q 026122           82 VGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAVAEMRIL  161 (243)
Q Consensus        82 iGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~~~~~~  161 (243)
                      +-||+|.-+-.++.                  ..++.++++|++ +++...++.+....   ...+|+|+..  +.....
T Consensus         4 ~~Cg~G~sTS~~~~------------------ki~~~~~~~~~~-~~v~~~~~~~~~~~---~~~~Diil~~--Pqv~~~   59 (96)
T cd05564           4 LVCSAGMSTSILVK------------------KMKKAAEKRGID-AEIEAVPESELEEY---IDDADVVLLG--PQVRYM   59 (96)
T ss_pred             EEcCCCchHHHHHH------------------HHHHHHHHCCCc-eEEEEecHHHHHHh---cCCCCEEEEC--hhHHHH
Confidence            56888875543332                  357777788875 88888888776432   2579999986  333444


Q ss_pred             HHHHccCccc
Q 026122          162 AEYCLPLVRV  171 (243)
Q Consensus       162 l~~~~~~Lkp  171 (243)
                      ++.+.+...+
T Consensus        60 ~~~i~~~~~~   69 (96)
T cd05564          60 LDEVKKKAAE   69 (96)
T ss_pred             HHHHHHHhcc
Confidence            4555543333

In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d

>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]

Probab=81.10  E-value=8.5  Score=31.44  Aligned_cols=100  Identities=13%  Similarity=0.164  Sum_probs=61.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHH---C-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC---cCCCCce
Q 026122           76 NLKLVDVGTGAGLPGLVLAIA---C-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV---SFREQYD  148 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~---~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~---~~~~~fD  148 (243)
                      +..|+++|+-.|..++..|..   . ...+|+++|++-....-+   +.  ..++|.+++++..+.....   ...+.+-
T Consensus        70 P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~---a~--e~p~i~f~egss~dpai~eqi~~~~~~y~  144 (237)
T COG3510          70 PSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPA---AR--EVPDILFIEGSSTDPAIAEQIRRLKNEYP  144 (237)
T ss_pred             CceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChh---hh--cCCCeEEEeCCCCCHHHHHHHHHHhcCCC
Confidence            679999999999887777743   2 237999999986532211   11  1457999999876643210   0112233


Q ss_pred             EEEE--cCccc---HHHHHHHHccCcccCeEEEEEeC
Q 026122          149 VAVA--RAVAE---MRILAEYCLPLVRVGGLFVAAKG  180 (243)
Q Consensus       149 ~I~~--~~~~~---~~~~l~~~~~~LkpgG~l~~~~~  180 (243)
                      -|+.  .+...   .-.-++...++|.-|-++++..+
T Consensus       145 kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs  181 (237)
T COG3510         145 KIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDS  181 (237)
T ss_pred             cEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEecc
Confidence            3333  33333   33444556688888888887653

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=81.09  E-value=11  Score=31.24  Aligned_cols=77  Identities=14%  Similarity=0.064  Sum_probs=50.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccC-------CcCCCC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD-------VSFREQ  146 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-------~~~~~~  146 (243)
                      ++++|=.| |+|.++..+++..  .+.+|+.++.+....+......+..+. ++.++.+|+.+....       ....++
T Consensus        12 ~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~-~~~~~~~Dl~d~~~i~~~~~~~~~~~~~   89 (259)
T PRK08213         12 GKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGI-DALWIAADVADEADIERLAEETLERFGH   89 (259)
T ss_pred             CCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            67888888 4666777777543  367999999998776665555544332 477888888763211       000136


Q ss_pred             ceEEEEcC
Q 026122          147 YDVAVARA  154 (243)
Q Consensus       147 fD~I~~~~  154 (243)
                      .|.|+.++
T Consensus        90 id~vi~~a   97 (259)
T PRK08213         90 VDILVNNA   97 (259)
T ss_pred             CCEEEECC
Confidence            89998764

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=81.08  E-value=17  Score=33.86  Aligned_cols=85  Identities=16%  Similarity=0.087  Sum_probs=51.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      +++|+=+|+|.  +|..+|+..  -+++|+.+|.++.....+    ...|.   ++.  ++.++.      ...|+|+..
T Consensus       254 GKtVgVIG~G~--IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A----~~~G~---~~~--~leell------~~ADIVI~a  316 (476)
T PTZ00075        254 GKTVVVCGYGD--VGKGCAQALRGFGARVVVTEIDPICALQA----AMEGY---QVV--TLEDVV------ETADIFVTA  316 (476)
T ss_pred             CCEEEEECCCH--HHHHHHHHHHHCCCEEEEEeCCchhHHHH----HhcCc---eec--cHHHHH------hcCCEEEEC
Confidence            88999999995  444444322  357999999987543222    11232   222  333331      468999985


Q ss_pred             CcccHHHHH-HHHccCcccCeEEEEEe
Q 026122          154 AVAEMRILA-EYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       154 ~~~~~~~~l-~~~~~~LkpgG~l~~~~  179 (243)
                      . .. ..++ ......+|||++++-..
T Consensus       317 t-Gt-~~iI~~e~~~~MKpGAiLINvG  341 (476)
T PTZ00075        317 T-GN-KDIITLEHMRRMKNNAIVGNIG  341 (476)
T ss_pred             C-Cc-ccccCHHHHhccCCCcEEEEcC
Confidence            4 22 2233 46778899999966543

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=81.02  E-value=26  Score=29.98  Aligned_cols=93  Identities=17%  Similarity=0.184  Sum_probs=50.3

Q ss_pred             eEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcc-------ccccccCCcCCCCceEE
Q 026122           78 KLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGR-------AETLGKDVSFREQYDVA  150 (243)
Q Consensus        78 ~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d-------~~~~~~~~~~~~~fD~I  150 (243)
                      +|+=+|+|.-...+.......+.+|+.++. ++.++..+    ..++. ++-..++       ..+...   ....+|+|
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~----~~g~~-~~~~~~~~~~~~~~~~~~~~---~~~~~d~v   72 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALR----ERGLV-IRSDHGDAVVPGPVITDPEE---LTGPFDLV   72 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHH----hCCeE-EEeCCCeEEecceeecCHHH---ccCCCCEE
Confidence            466778876544333322333578999998 55444332    33321 1111001       111110   11568988


Q ss_pred             EEcC-cccHHHHHHHHccCcccCeEEEEEe
Q 026122          151 VARA-VAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       151 ~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      +... ....+.+++.+...+.++..++...
T Consensus        73 ilavk~~~~~~~~~~l~~~~~~~~~ii~~~  102 (305)
T PRK12921         73 ILAVKAYQLDAAIPDLKPLVGEDTVIIPLQ  102 (305)
T ss_pred             EEEecccCHHHHHHHHHhhcCCCCEEEEee
Confidence            8643 3457888888888888877666554

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=80.97  E-value=19  Score=31.07  Aligned_cols=105  Identities=14%  Similarity=0.087  Sum_probs=58.3

Q ss_pred             CCChHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCc-c-cHHH
Q 026122           85 GAGLPGLVLAIA--CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV-A-EMRI  160 (243)
Q Consensus        85 G~G~~~~~la~~--~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~-~-~~~~  160 (243)
                      |.|..+..++..  ..+.+|+..|.+++..+.++    ..+.   + ...+.++.....   +..|+|+.... . ..+.
T Consensus         7 GlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~----~~g~---~-~~~s~~~~~~~~---~~advVi~~vp~~~~~~~   75 (299)
T PRK12490          7 GLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAG----KLGI---T-ARHSLEELVSKL---EAPRTIWVMVPAGEVTES   75 (299)
T ss_pred             cccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH----HCCC---e-ecCCHHHHHHhC---CCCCEEEEEecCchHHHH
Confidence            445555555543  24578999999987554432    2332   2 122333332110   22577776432 2 4567


Q ss_pred             HHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCee
Q 026122          161 LAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASL  201 (243)
Q Consensus       161 ~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~  201 (243)
                      +++.+...+++|-. ++..+........++.+.+...|...
T Consensus        76 v~~~i~~~l~~g~i-vid~st~~~~~~~~~~~~~~~~g~~~  115 (299)
T PRK12490         76 VIKDLYPLLSPGDI-VVDGGNSRYKDDLRRAEELAERGIHY  115 (299)
T ss_pred             HHHHHhccCCCCCE-EEECCCCCchhHHHHHHHHHHcCCeE
Confidence            77778888877754 44444444445555666677777643

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=80.87  E-value=9.1  Score=33.87  Aligned_cols=99  Identities=13%  Similarity=0.023  Sum_probs=54.4

Q ss_pred             CCCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEc--cccc-cccCCcCCCCc
Q 026122           73 CNSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRG--RAET-LGKDVSFREQY  147 (243)
Q Consensus        73 ~~~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~--d~~~-~~~~~~~~~~f  147 (243)
                      +.++.+||=.|+| .|..++.+|+..+...|++++.+++..+.++    ++|... +.....  +..+ +...  ..+.+
T Consensus       181 ~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~----~~g~~~~v~~~~~~~~~~~~l~~~--~~~~~  254 (365)
T cd05279         181 VTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAK----QLGATECINPRDQDKPIVEVLTEM--TDGGV  254 (365)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH----HhCCCeecccccccchHHHHHHHH--hCCCC
Confidence            3457788888764 2333445566654346899998887665553    345431 111111  1111 1000  02469


Q ss_pred             eEEEEcCcccHHHHHHHHccCcc-cCeEEEEEe
Q 026122          148 DVAVARAVAEMRILAEYCLPLVR-VGGLFVAAK  179 (243)
Q Consensus       148 D~I~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~  179 (243)
                      |+|+...- . ...+..+.+.|+ ++|.++...
T Consensus       255 d~vid~~g-~-~~~~~~~~~~l~~~~G~~v~~g  285 (365)
T cd05279         255 DYAFEVIG-S-ADTLKQALDATRLGGGTSVVVG  285 (365)
T ss_pred             cEEEECCC-C-HHHHHHHHHHhccCCCEEEEEe
Confidence            99996432 1 345566777888 999987653

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=80.87  E-value=22  Score=32.40  Aligned_cols=70  Identities=19%  Similarity=0.102  Sum_probs=40.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCH-HHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMN-KRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~-~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      +++|+=+|+|....++.......+++|+++|.+. ..++...+...+.+   ++++.++..+-.     .+.+|+|+.+
T Consensus         5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~-----~~~~d~vv~~   75 (450)
T PRK14106          5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELG---IELVLGEYPEEF-----LEGVDLVVVS   75 (450)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcC---CEEEeCCcchhH-----hhcCCEEEEC
Confidence            6789999887733333333334578999999985 22222122233333   556666665521     1569988875

>PRK06128 oxidoreductase; Provisional

Probab=80.85  E-value=23  Score=30.30  Aligned_cols=102  Identities=16%  Similarity=0.091  Sum_probs=57.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHH--HHHHHHHHHHHcCCCCEEEEEccccccccCC-------cCC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNK--RCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------SFR  144 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~--~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-------~~~  144 (243)
                      +++||=.|++.| ++..+++.+  .+.+|+.+..+.+  ..+...+.++..+. ++.++.+|+.+.....       ...
T Consensus        55 ~k~vlITGas~g-IG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~v~~~~~~~~~~~  132 (300)
T PRK06128         55 GRKALITGADSG-IGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGR-KAVALPGDLKDEAFCRQLVERAVKEL  132 (300)
T ss_pred             CCEEEEecCCCc-HHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHHHHHHHh
Confidence            578898886544 555666543  4678887766543  22223333333332 4678888887632100       001


Q ss_pred             CCceEEEEcCcc-------------c-----------HHHHHHHHccCcccCeEEEEEe
Q 026122          145 EQYDVAVARAVA-------------E-----------MRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       145 ~~fD~I~~~~~~-------------~-----------~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      +..|+++.++..             +           ...+++.+.+.++++|.++...
T Consensus       133 g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~s  191 (300)
T PRK06128        133 GGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTG  191 (300)
T ss_pred             CCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEEC
Confidence            468999986410             0           1235556667777888877654

>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

Probab=80.79  E-value=10  Score=32.76  Aligned_cols=95  Identities=20%  Similarity=0.178  Sum_probs=54.9

Q ss_pred             CCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccc-cc----cccCCcCCCCc
Q 026122           74 NSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRA-ET----LGKDVSFREQY  147 (243)
Q Consensus        74 ~~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~-~~----~~~~~~~~~~f  147 (243)
                      .++.+||=.|+| .|..++.+|+...+.+|++++.+++..+.++    +.|.+.  ++...- .+    +...   .+.+
T Consensus       161 ~~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~----~~g~~~--v~~~~~~~~~~~~v~~~---~~~~  231 (338)
T PRK09422        161 KPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAK----EVGADL--TINSKRVEDVAKIIQEK---TGGA  231 (338)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHH----HcCCcE--EecccccccHHHHHHHh---cCCC
Confidence            457888888864 2344455665533679999999998666663    345432  221110 11    1111   1347


Q ss_pred             eEEEEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122          148 DVAVARAVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       148 D~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      |.++.....  ...++.+.+.|+++|.++...
T Consensus       232 d~vi~~~~~--~~~~~~~~~~l~~~G~~v~~g  261 (338)
T PRK09422        232 HAAVVTAVA--KAAFNQAVDAVRAGGRVVAVG  261 (338)
T ss_pred             cEEEEeCCC--HHHHHHHHHhccCCCEEEEEe
Confidence            844433222  345677888999999987653

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=80.69  E-value=13  Score=31.55  Aligned_cols=94  Identities=22%  Similarity=0.189  Sum_probs=56.8

Q ss_pred             CCCCeEEEEcC--CCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccc-cccCCcCCCCceEE
Q 026122           74 NSNLKLVDVGT--GAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAET-LGKDVSFREQYDVA  150 (243)
Q Consensus        74 ~~~~~VLDiGc--G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~~~~~~~~~~fD~I  150 (243)
                      .++.+||=.|+  +.|..++.+|+.. +++|+++..+++..+.+    +..|...+-....+..+ +...   ...+|++
T Consensus       141 ~~g~~vlV~ga~g~~g~~~~~~a~~~-g~~v~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~i~~~---~~~~d~v  212 (320)
T cd08243         141 QPGDTLLIRGGTSSVGLAALKLAKAL-GATVTATTRSPERAALL----KELGADEVVIDDGAIAEQLRAA---PGGFDKV  212 (320)
T ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHc-CCEEEEEeCCHHHHHHH----HhcCCcEEEecCccHHHHHHHh---CCCceEE
Confidence            45788888886  3555666677665 57899999988755444    33554322111111111 1111   2569999


Q ss_pred             EEcCcccHHHHHHHHccCcccCeEEEEE
Q 026122          151 VARAVAEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       151 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                      +.....   ..+..+.+.|+++|+++..
T Consensus       213 l~~~~~---~~~~~~~~~l~~~g~~v~~  237 (320)
T cd08243         213 LELVGT---ATLKDSLRHLRPGGIVCMT  237 (320)
T ss_pred             EECCCh---HHHHHHHHHhccCCEEEEE
Confidence            964332   3567778899999997654

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PRK07814 short chain dehydrogenase; Provisional

Probab=80.33  E-value=12  Score=31.18  Aligned_cols=77  Identities=12%  Similarity=0.082  Sum_probs=49.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC-------cCCCC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------SFREQ  146 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-------~~~~~  146 (243)
                      ++++|=.|+ +|.++..+++..  .+++|++++.+++..+...+..+..+ .++.++.+|+.+.....       ..-++
T Consensus        10 ~~~vlItGa-sggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   87 (263)
T PRK07814         10 DQVAVVTGA-GRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAG-RRAHVVAADLAHPEATAGLAGQAVEAFGR   87 (263)
T ss_pred             CCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            678888886 555666666532  46899999999876665555444333 24778888877643210       00136


Q ss_pred             ceEEEEcC
Q 026122          147 YDVAVARA  154 (243)
Q Consensus       147 fD~I~~~~  154 (243)
                      .|+|+.++
T Consensus        88 id~vi~~A   95 (263)
T PRK07814         88 LDIVVNNV   95 (263)
T ss_pred             CCEEEECC
Confidence            89999754

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=80.31  E-value=31  Score=31.24  Aligned_cols=92  Identities=20%  Similarity=0.112  Sum_probs=48.0

Q ss_pred             EEEEcCCCChHHHHHHH--HCCCCEEEEEeCCHHHHHHHHHHH------------HH-cCCCCEEEEEccccccccCCcC
Q 026122           79 LVDVGTGAGLPGLVLAI--ACPDWKVTLLESMNKRCVFLEHAV------------SL-TQLLNVQIVRGRAETLGKDVSF  143 (243)
Q Consensus        79 VLDiGcG~G~~~~~la~--~~~~~~v~~vD~s~~~~~~a~~~~------------~~-~~~~~v~~~~~d~~~~~~~~~~  143 (243)
                      |-=||+|.  +|..+|.  ...+.+|+++|.+++.++..++..            .+ ....++++. .+..+..     
T Consensus         3 I~vIGlG~--~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~-~~~~~~~-----   74 (411)
T TIGR03026         3 IAVIGLGY--VGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRAT-TDYEDAI-----   74 (411)
T ss_pred             EEEECCCc--hhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEE-CCHHHHH-----
Confidence            44566664  3333433  234679999999998776543210            00 000112221 2222211     


Q ss_pred             CCCceEEEEcCc-----------ccHHHHHHHHccCcccCeEEEEEe
Q 026122          144 REQYDVAVARAV-----------AEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       144 ~~~fD~I~~~~~-----------~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                       ...|+|+..-.           .......+.+.+.+++|-.++..+
T Consensus        75 -~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~S  120 (411)
T TIGR03026        75 -RDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLES  120 (411)
T ss_pred             -hhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeC
Confidence             35788886321           125666677777888776655443

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	243
1xdz_A	240	Crystal Structure Of Gram_positive Bacillus Subtili		1e-36
3g88_A	249	T. Thermophilus 16s Rrna G527 Methyltransferase In		2e-24
1jsx_A	207	Crystal Structure Of The Escherichia Coli Glucose-I		1e-18

>pdb|1XDZ|A Chain A, Crystal Structure Of Gram_positive Bacillus Subtilis Glucose Inhibited Division Protein B (Gidb), Structural Genomics, Mcsg Length = 240

Iteration: 1
 Score =  149 bits (377), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 82/211 (38%), Positives = 113/211 (53%), Gaps = 10/211 (4%)
Query: 33  QKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLV 92
           +K+NLT++ +  EV  +H  DS+          T+      N    + DVG GAG P L 
Sbjct: 38  EKINLTSITEKKEVYLKHFYDSI----------TAAFYVDFNQVNTICDVGAGAGFPSLP 87
Query: 93  LAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA 152
           + I  P   VT+++S+NKR  FLE      QL N      RAET G+    RE YD+  A
Sbjct: 88  IKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTA 147
Query: 153 RAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSP 212
           RAVA + +L+E CLPLV+  GLFVA K    +EE+   ++A+  +G  L  + S +    
Sbjct: 148 RAVARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELENIHSFKLPIE 207
Query: 213 FGQRTAVVCLKSRRTPKKYPRDPGTPAKVPL 243
              R  +V  K + TPKKYPR PGTP K P+
Sbjct: 208 ESDRNIMVIRKIKNTPKKYPRKPGTPNKSPI 238

>pdb|3G88|A Chain A, T. Thermophilus 16s Rrna G527 Methyltransferase In Complex With Adomet In Space Group P61 Length = 249

Iteration: 1
 Score =  108 bits (271), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/210 (35%), Positives = 116/210 (55%), Gaps = 10/210 (4%)
Query: 34  KMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLVL 93
           K+NLTA++   EV+ +H  DSL ++                  L+++D+GTGAG PGL L
Sbjct: 49  KVNLTALRGEEEVVVKHFLDSLTLL----------RLPLWQGPLRVLDLGTGAGFPGLPL 98
Query: 94  AIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR 153
            I  P+ ++ L+++  K+  F+E A+ +  L   + + GRAE L ++   RE Y  AVAR
Sbjct: 99  KIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR 158
Query: 154 AVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPF 213
           AVA + +L+E  LP + VGG  VA KG   +EE+     A++ +G  L ++ +++     
Sbjct: 159 AVAPLCVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPALERLGGRLGEVLALQLPLSG 218
Query: 214 GQRTAVVCLKSRRTPKKYPRDPGTPAKVPL 243
             R  VV  K+  TP  YPR PG P + PL
Sbjct: 219 EARHLVVLEKTAPTPPAYPRRPGVPERHPL 248

>pdb|1JSX|A Chain A, Crystal Structure Of The Escherichia Coli Glucose-Inhibited Division Protein B (Gidb) Length = 207

Iteration: 1
 Score = 90.1 bits (222), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 93/186 (50%), Gaps = 22/186 (11%)
Query: 36  NLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLVLAI 95
           NLT+V+D NE++ RHI DS+ + P ++               + +DVGTG GLPG+ L+I
Sbjct: 39  NLTSVRDPNEMLVRHILDSIVVAPYLQGE-------------RFIDVGTGPGLPGIPLSI 85
Query: 96  ACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV 155
             P+   TLL+S+ KR  FL       +L N++ V+ R E    +  F    D  ++RA 
Sbjct: 86  VRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPF----DGVISRAF 141
Query: 156 AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQ 215
           A +  +  +C  L    G F A KG  P++E+       Q+     LQ+ +++     G+
Sbjct: 142 ASLNDMVSWCHHLPGEQGRFYALKGQMPEDEIALLPEEYQVESVVKLQVPALD-----GE 196
Query: 216 RTAVVC 221
           R  VV 
Sbjct: 197 RHLVVI 202

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	243
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	2e-84
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	3e-82
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	1e-65
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	1e-04
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	1e-04
3ocj_A	305	Putative exported protein; structural genomics, PS	4e-04

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 Length = 240

 Score =  250 bits (640), Expect = 2e-84
 Identities = 81/211 (38%), Positives = 112/211 (53%), Gaps = 10/211 (4%)

Query: 33  QKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLV 92
           +K+NLT++ +  EV  +H  DS+     +            N    + DVG GAG P L 
Sbjct: 38  EKINLTSITEKKEVYLKHFYDSITAAFYVDF----------NQVNTICDVGAGAGFPSLP 87

Query: 93  LAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA 152
           + I  P   VT+++S+NKR  FLE      QL N      RAET G+    RE YD+  A
Sbjct: 88  IKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTA 147

Query: 153 RAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSP 212
           RAVA + +L+E CLPLV+  GLFVA K    +EE+   ++A+  +G  L  + S +    
Sbjct: 148 RAVARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELENIHSFKLPIE 207

Query: 213 FGQRTAVVCLKSRRTPKKYPRDPGTPAKVPL 243
              R  +V  K + TPKKYPR PGTP K P+
Sbjct: 208 ESDRNIMVIRKIKNTPKKYPRKPGTPNKSPI 238

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* Length = 249

 Score =  245 bits (627), Expect = 3e-82
 Identities = 80/234 (34%), Positives = 122/234 (52%), Gaps = 21/234 (8%)

Query: 21  LGLFLKKRKQNL-----------QKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHC 69
           LGL LK   +              K+NLTA++   EV+ +H  DSL ++           
Sbjct: 25  LGLDLKPHLEAFSRLYALLQEASGKVNLTALRGEEEVVVKHFLDSLTLLRLPLW------ 78

Query: 70  DSSCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQI 129
                  L+++D+GTGAG PGL L I  P+ ++ L+++  K+  F+E A+ +  L   + 
Sbjct: 79  ----QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARA 134

Query: 130 VRGRAETLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKN 189
           + GRAE L ++   RE Y  AVARAVA + +L+E  LP + VGG  VA KG   +EE+  
Sbjct: 135 LWGRAEVLAREAGHREAYARAVARAVAPLCVLSELLLPFLEVGGAAVAMKGPRVEEELAP 194

Query: 190 SERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDPGTPAKVPL 243
              A++ +G  L ++ +++       R  VV  K+  TP  YPR PG P + PL
Sbjct: 195 LPPALERLGGRLGEVLALQLPLSGEARHLVVLEKTAPTPPAYPRRPGVPERHPL 248

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 Length = 207

 Score =  201 bits (513), Expect = 1e-65
 Identities = 58/193 (30%), Positives = 95/193 (49%), Gaps = 22/193 (11%)

Query: 33  QKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLV 92
           +  NLT+V+D NE++ RHI DS+ + P ++               + +DVGTG GLPG+ 
Sbjct: 36  KAYNLTSVRDPNEMLVRHILDSIVVAPYLQGE-------------RFIDVGTGPGLPGIP 82

Query: 93  LAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA 152
           L+I  P+   TLL+S+ KR  FL       +L N++ V+ R E           +D  ++
Sbjct: 83  LSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPS----EPPFDGVIS 138

Query: 153 RAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSP 212
           RA A +  +  +C  L    G F A KG  P++E+       Q+     LQ+ +++    
Sbjct: 139 RAFASLNDMVSWCHHLPGEQGRFYALKGQMPEDEIALLPEEYQVESVVKLQVPALD---- 194

Query: 213 FGQRTAVVCLKSR 225
            G+R  VV   ++
Sbjct: 195 -GERHLVVIKANK 206

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 33/160 (20%), Positives = 59/160 (36%), Gaps = 29/160 (18%)

Query: 35  MNLTAVKDV-NEVMER---HIDDSLAIIPPIKNSYTSHCDSSCN--SNLKLVDVGTGAGL 88
           M+L+ +K   + V  +           IP   + Y      +     N  ++D+G G GL
Sbjct: 1   MSLSEIKRKFDAVSGKYDEQRRKF---IPCFDDFYGVSVSIASVDTENPDILDLGAGTGL 57

Query: 89  PGLVLAIACPDWKVTLL---ESMNKRCVFLEHAVS-LTQLLNVQIVRGRAETLGKDVSFR 144
               L    P+   TL+   E M      LE A +     L V+ +            F 
Sbjct: 58  LSAFLMEKYPEATFTLVDMSEKM------LEIAKNRFRGNLKVKYIEADYSKY----DFE 107

Query: 145 EQYDVAVARAV------AEMRILAEYCLPLVRVGGLFVAA 178
           E+YD+ V+          + + L +    +++  G+F+ A
Sbjct: 108 EKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINA 147

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284

 Score = 41.5 bits (97), Expect = 1e-04
 Identities = 27/119 (22%), Positives = 48/119 (40%), Gaps = 22/119 (18%)

Query: 74  NSNLKLVDVGTGAGLPGLVLA-IACPDWKVTLL---ESMNKRCVFLEHAVSLTQL--LNV 127
              + +VD G G G  GLVL  +     K T +   E++      L  A  L +L   + 
Sbjct: 21  TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETL------LAEARELFRLLPYDS 74

Query: 128 QIVRGRAETLGKDVSFREQYDVAVARAVAE-----MRILAEYCLPLVRVGGLFVAAKGH 181
           + + G A  +       ++YD+A+  A          +L +  +  V+ GG  +  + H
Sbjct: 75  EFLEGDATEI----ELNDKYDIAICHAFLLHMTTPETMLQK-MIHSVKKGGKIICFEPH 128

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305

 Score = 40.1 bits (93), Expect = 4e-04
 Identities = 28/142 (19%), Positives = 42/142 (29%), Gaps = 25/142 (17%)

Query: 78  KLVDVGTGAGLPGLVLAI-ACPDWKVTLL---ESMNKRCVFLEHAVSLTQLL----NVQI 129
            +  V  G     L L   ACP  ++  +            L+ A  L         + +
Sbjct: 121 VVASVPCGWMSELLALDYSACPGVQLVGIDYDPEA------LDGATRLAAGHALAGQITL 174

Query: 130 VRGRAETLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRV-------GGLFVAAKGHD 182
            R  A  L      RE YD+  +  +            L R        GG  V +    
Sbjct: 175 HRQDAWKL----DTREGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTP 230

Query: 183 PQEEVKNSERAVQLMGASLLQL 204
           P     +S   +Q +    LQL
Sbjct: 231 PPALSPDSPWDMQAIDPHDLQL 252

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	243
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	100.0
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	100.0
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.94
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.82
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.8
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.8
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.8
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.8
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.8
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.8
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.8
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.79
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.79
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.78
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.78
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.78
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.78
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.77
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.77
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.77
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.77
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.77
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.76
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.76
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.76
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.76
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.76
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.75
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.75
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.75
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.75
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.75
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.75
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.74
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.74
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.74
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.74
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.74
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.74
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.74
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.74
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.74
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.74
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.74
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.74
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.74
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.73
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.73
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.73
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.73
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.73
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.73
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.72
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.72
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.72
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.72
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.72
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.72
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.72
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.71
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.71
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.71
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.71
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.71
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.71
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.71
3ocj_A	305	Putative exported protein; structural genomics, PS	99.71
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.71
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.71
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.71
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.7
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.7
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.7
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.7
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.7
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.7
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.7
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.7
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.7
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.7
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.7
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.7
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.7
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.69
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.69
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.69
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.69
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.68
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.68
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.68
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.68
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.68
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.68
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.68
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.68
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.67
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.67
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.67
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.67
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.67
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.67
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.67
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.67
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.67
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.67
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.67
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.67
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.66
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.66
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.66
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.66
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.66
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.66
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.66
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.66
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.66
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.65
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.65
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.65
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.65
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.65
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.65
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.65
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.64
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.64
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.64
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.64
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.64
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.64
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.64
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.64
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.63
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.63
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.63
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.63
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.63
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.63
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.62
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.62
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.62
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.62
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.62
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.62
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.62
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.62
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.62
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.62
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.62
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.61
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.61
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.61
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.61
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.61
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.61
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.61
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.6
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.6
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.6
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.6
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.6
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.6
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.59
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.59
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.59
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.59
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.59
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.59
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.59
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.59
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.58
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.58
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.58
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.58
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.58
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.58
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.58
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.58
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.58
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.58
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.58
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.58
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.58
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.58
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.58
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.57
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.57
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.57
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.57
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.57
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.57
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.57
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.57
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.56
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.56
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.55
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.55
2o07_A	304	Spermidine synthase; structural genomics, structur	99.55
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.55
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.55
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.54
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.54
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.54
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.54
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.54
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.54
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.54
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.54
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.53
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.53
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.53
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.53
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.53
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.53
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.53
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.52
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.52
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.52
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.51
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.51
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.51
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.5
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.5
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.5
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.49
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.48
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.48
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	99.47
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.47
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.47
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.46
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.45
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.45
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.44
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.44
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.44
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.43
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.43
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	99.41
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.4
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.4
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	99.4
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	99.38
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.38
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.36
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	99.36
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	99.34
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.33
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	99.33
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.33
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	99.32
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	99.32
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.31
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	99.31
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.31
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	99.3
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.29
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	99.21
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.2
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	99.16
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	99.12
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	99.12
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	99.12
3ll7_A	410	Putative methyltransferase; methytransferase, stru	99.11
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	99.09
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	99.08
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	99.08
3cvo_A	202	Methyltransferase-like protein of unknown functio;	99.06
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	99.06
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	99.05
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.03
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	99.02
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	99.01
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.98
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.95
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.94
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.93
3lkd_A	542	Type I restriction-modification system methyltrans	98.88
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.88
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.87
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	98.87
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.85
3khk_A	544	Type I restriction-modification system methylation	98.76
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.62
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	98.58
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	98.54
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	98.51
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	98.41
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.39
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.29
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	98.27
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	98.24
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	98.24
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	98.21
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	98.2
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	98.19
2oo3_A	283	Protein involved in catabolism of external DNA; st	98.16
3ufb_A	530	Type I restriction-modification system methyltran	98.14
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	98.05
2zig_A	297	TTHA0409, putative modification methylase; methylt	98.01
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	98.01
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	97.81
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	97.78
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	97.71
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	97.57
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	97.56
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	97.53
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	97.48
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	97.22
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	97.13
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	97.08
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	97.06
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	97.04
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	97.03
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	97.02
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	96.99
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	96.97
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	96.94
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	96.81
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	96.79
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	96.78
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	96.69
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	96.66
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	96.66
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	96.61
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	96.52
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	96.46
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	96.44
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	96.36
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	96.33
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	96.31
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	96.3
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	96.25
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	96.22
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	96.16
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	96.09
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	96.08
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	96.03
3gms_A	340	Putative NADPH:quinone reductase; structural genom	96.0
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	96.0
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	95.99
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	95.98
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	95.97
4eye_A	342	Probable oxidoreductase; structural genomics, niai	95.95
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	95.95
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	95.93
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	95.93
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	95.91
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	95.89
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	95.88
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	95.86
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	95.85
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	95.78
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	95.72
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	95.71
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	95.69
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	95.69
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	95.63
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	95.51
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	95.49
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	95.47
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	95.39
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	95.36
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	95.34
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	95.33
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	95.28
3me5_A	482	Cytosine-specific methyltransferase; structural ge	95.23
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	95.23
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	95.17
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	95.12
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	95.09
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	95.05
4ft4_B	784	DNA (cytosine-5)-methyltransferase 1; chromodomain	94.91
2zig_A	297	TTHA0409, putative modification methylase; methylt	94.84
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	94.83
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	94.63
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	94.59
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	94.43
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	94.32
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	94.26
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	94.26
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	94.24
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	94.05
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	93.9
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	93.88
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	93.74
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	93.67
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	93.47
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	93.26
4dkj_A	403	Cytosine-specific methyltransferase; CG-specificit	93.16
3av4_A	1330	DNA (cytosine-5)-methyltransferase 1; CXXC-type zi	93.13
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	92.84
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	92.73
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	92.59
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	92.56
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	92.33
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	92.15
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	92.03
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	91.97
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	91.55
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	91.54
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	91.53
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	91.52
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	91.51
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	91.46
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	91.45
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	91.35
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	91.34
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	91.3
4gmf_A	372	Yersiniabactin biosynthetic protein YBTU; rossmann	91.13
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	90.82
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	90.72
3c85_A	183	Putative glutathione-regulated potassium-efflux S	90.49
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	90.44
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	90.34
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	90.24
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	90.0
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	89.86
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	89.78
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	89.67
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	89.62
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	89.58
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	89.57
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	89.51
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	89.4
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	89.33
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	89.26
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	89.22
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	89.2
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	88.91
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	88.9
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	88.85
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	88.84
1id1_A	153	Putative potassium channel protein; RCK domain, E.	88.79
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	88.38
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	88.34
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	88.05
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	87.98
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	87.97
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	87.92
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	87.9
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	87.88
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	87.78
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	87.75
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	87.62
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	87.61
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	87.58
4f6c_A	427	AUSA reductase domain protein; thioester reductase	87.36
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	87.35
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	87.31
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	87.26
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	87.12
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	86.93
4had_A	350	Probable oxidoreductase protein; structural genomi	86.92
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	86.9
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	86.78
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	86.43
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	86.37
4ezb_A	317	Uncharacterized conserved protein; structural geno	86.31
2hwk_A	320	Helicase NSP2; rossman fold, alpha/beta/alpha, mul	86.23
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	86.19
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	85.94
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	85.92
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	85.84
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	85.47
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	85.41
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	85.36
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	85.24
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	85.08
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	85.04
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	85.03
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	84.86
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	84.79
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	84.75
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	84.63
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	84.49
4f6l_B	508	AUSA reductase domain protein; thioester reductase	84.42
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	84.42
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	84.4
2nvw_A	479	Galactose/lactose metabolism regulatory protein GA	84.32
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	84.22
1xq1_A	266	Putative tropinone reducatse; structural genomics,	84.15
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	84.13
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	84.11
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	84.11
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	84.05
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	84.0
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	83.88
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	83.87
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	83.78
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	83.75
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	83.54
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	83.53
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	83.52
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	83.4
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	83.27
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	83.21
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	83.2
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	83.13
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	83.04
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	82.98

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=100.00  E-value=2.2e-39  Score=273.17  Aligned_cols=217  Identities=35%  Similarity=0.537  Sum_probs=188.6

Q ss_pred             HHHHHHHHHHHHHHHhccCCccccCChHHHHHHhHhhhcccCCCcccccCccCCCCCCCCCeEEEEcCCCChHHHHHHHH
Q 026122           17 MFFYLGLFLKKRKQNLQKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLVLAIA   96 (243)
Q Consensus        17 ~~~~l~~~~~~~~~~n~~~n~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~VLDiGcG~G~~~~~la~~   96 (243)
                      ..+++..|.+.+.+||+.+|++...+.+++|.+|+.+++.......          +.++.+|||||||+|.+++.+|..
T Consensus        32 ~~~~~~~~~~~l~~~~~~~nl~~i~~~~~~~~~~~~ds~~~l~~~~----------~~~~~~vLDiG~G~G~~~i~la~~  101 (249)
T 3g89_A           32 HLEAFSRLYALLQEASGKVNLTALRGEEEVVVKHFLDSLTLLRLPL----------WQGPLRVLDLGTGAGFPGLPLKIV  101 (249)
T ss_dssp             GHHHHHHHHHHHHHC----------CHHHHHHHHHHHHHGGGGSSC----------CCSSCEEEEETCTTTTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCCceECCHHHHhhceeeechhhhcccc----------cCCCCEEEEEcCCCCHHHHHHHHH
Confidence            5678999999999999999999999999999999999987765432          133789999999999999999999


Q ss_pred             CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCcccHHHHHHHHccCcccCeEEE
Q 026122           97 CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFV  176 (243)
Q Consensus        97 ~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~~~~~~l~~~~~~LkpgG~l~  176 (243)
                      +|+.+|+++|+|+++++.++++++.+++.|++++++|++++.......++||+|+++++.++..+++.+.++|||||+++
T Consensus       102 ~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~a~~~~~~ll~~~~~~LkpgG~l~  181 (249)
T 3g89_A          102 RPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVARAVAPLCVLSELLLPFLEVGGAAV  181 (249)
T ss_dssp             CTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEESSCCHHHHHHHHGGGEEEEEEEE
T ss_pred             CCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEECCcCCHHHHHHHHHHHcCCCeEEE
Confidence            89999999999999999999999999998899999999987643112368999999999999999999999999999999


Q ss_pred             EEeCCCcHHHHHHHHHHHHHhCCeeeEEEEEecCCCCCceEEEEEEeeCCCCCCCCCCCCCCCCCCC
Q 026122          177 AAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDPGTPAKVPL  243 (243)
Q Consensus       177 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~v~~~k~~~~~~~yp~~~~~~~~~p~  243 (243)
                      ++.+....+++.++.+.++..|+.+.++..+..+..+..|++++++|.+.||++|||++|+|.|+||
T Consensus       182 ~~~g~~~~~e~~~~~~~l~~~G~~~~~~~~~~~p~~~~~R~l~~~~k~~~t~~~yPr~~g~~~k~pl  248 (249)
T 3g89_A          182 AMKGPRVEEELAPLPPALERLGGRLGEVLALQLPLSGEARHLVVLEKTAPTPPAYPRRPGVPERHPL  248 (249)
T ss_dssp             EEECSCCHHHHTTHHHHHHHHTEEEEEEEEEECTTTCCEEEEEEEEECSCCCTTCSCSTTHHHHSCC
T ss_pred             EEeCCCcHHHHHHHHHHHHHcCCeEEEEEEeeCCCCCCcEEEEEEEeCCCCCCCCCCCCCCcCCCCC
Confidence            9999888899999999999999999999999888888899999999999999999999999999998

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=100.00  E-value=9.4e-36  Score=249.07  Aligned_cols=222  Identities=37%  Similarity=0.581  Sum_probs=196.4

Q ss_pred             cchHHHHHHHHHHHHHHHHHhccCCccccCChHHHHHHhHhhhcccCCCcccccCccCCCCCCCCCeEEEEcCCCChHHH
Q 026122           12 SVFMFMFFYLGLFLKKRKQNLQKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGL   91 (243)
Q Consensus        12 ~~~~~~~~~l~~~~~~~~~~n~~~n~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~VLDiGcG~G~~~~   91 (243)
                      .+.....+.+..|++.+.+||+.+|++.+....+.|.+++.+++.....+.          ++++.+|||||||+|.+++
T Consensus        17 ~l~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~d~l~~~~~~~----------~~~~~~vLDiG~G~G~~~~   86 (240)
T 1xdz_A           17 SLSPRQLEQFELYYDMLVEWNEKINLTSITEKKEVYLKHFYDSITAAFYVD----------FNQVNTICDVGAGAGFPSL   86 (240)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHSCCCSCCSHHHHHHHTHHHHHGGGGTSC----------GGGCCEEEEECSSSCTTHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHhHhcCccccCCHHHHHHHHHHHHHhHHHhcc----------cCCCCEEEEecCCCCHHHH
Confidence            345567788999999999999999999999999999999999887655432          1237899999999999999


Q ss_pred             HHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCcccHHHHHHHHccCccc
Q 026122           92 VLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRV  171 (243)
Q Consensus        92 ~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~~~~~~l~~~~~~Lkp  171 (243)
                      .++...++.+|+|+|+|+++++.++++++.+++.+++++++|+.++.......++||+|+++++.++..+++.+.++|+|
T Consensus        87 ~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~~~~~~~~l~~~~~~Lkp  166 (240)
T 1xdz_A           87 PIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARAVARLSVLSELCLPLVKK  166 (240)
T ss_dssp             HHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEECCSCHHHHHHHHGGGEEE
T ss_pred             HHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEeccCCHHHHHHHHHHhcCC
Confidence            99988888999999999999999999999999988999999998876321113689999999999999999999999999


Q ss_pred             CeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEEEecCCCCCceEEEEEEeeCCCCCCCCCCCCCCCCCCC
Q 026122          172 GGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDPGTPAKVPL  243 (243)
Q Consensus       172 gG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~v~~~k~~~~~~~yp~~~~~~~~~p~  243 (243)
                      ||.+++..+....+++.++.+.++.+|+.+.+...+..+..++.+.+++++|...+|.+|||+||.+.|+||
T Consensus       167 gG~l~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~k~~~~~~~~pr~~~~~~~~pl  238 (240)
T 1xdz_A          167 NGLFVALKAASAEEELNAGKKAITTLGGELENIHSFKLPIEESDRNIMVIRKIKNTPKKYPRKPGTPNKSPI  238 (240)
T ss_dssp             EEEEEEEECC-CHHHHHHHHHHHHHTTEEEEEEEEEECTTTCCEEEEEEEEECSCCCTTCSCSTTHHHHSCC
T ss_pred             CCEEEEEeCCCchHHHHHHHHHHHHcCCeEeEEEEEecCCCCCceEEEEEEecCCCCCCCCCCCCccccCCC
Confidence            999999988888888888889999999999988888888778899999999999999999999999999998

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.94  E-value=1.9e-25  Score=181.65  Aligned_cols=190  Identities=29%  Similarity=0.437  Sum_probs=151.2

Q ss_pred             chHHHHHHHHHHHHHHHHHhccCCccccCChHHHHHHhHhhhcccCCCcccccCccCCCCCCCCCeEEEEcCCCChHHHH
Q 026122           13 VFMFMFFYLGLFLKKRKQNLQKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLV   92 (243)
Q Consensus        13 ~~~~~~~~l~~~~~~~~~~n~~~n~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~VLDiGcG~G~~~~~   92 (243)
                      +.....+++..|.+....|++.++++..+...+.+.+++++.+...+..+             +.+|||+|||+|..++.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------~~~vLDiG~G~G~~~~~   82 (207)
T 1jsx_A           16 LTDHQKNQLIAYVNMLHKWNKAYNLTSVRDPNEMLVRHILDSIVVAPYLQ-------------GERFIDVGTGPGLPGIP   82 (207)
T ss_dssp             CCHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHGGGCC-------------SSEEEEETCTTTTTHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHhhhhhhhhcC-------------CCeEEEECCCCCHHHHH
Confidence            45567788999999999999999998888778888899888876543222             67999999999999999


Q ss_pred             HHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCcccHHHHHHHHccCcccC
Q 026122           93 LAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVG  172 (243)
Q Consensus        93 la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~~~~~~l~~~~~~Lkpg  172 (243)
                      ++...|+.+|+|+|+|+.+++.++++++..++.+++++++|+.+...    .++||+|+++.+.++..+++.+.++|+||
T Consensus        83 l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~----~~~~D~i~~~~~~~~~~~l~~~~~~L~~g  158 (207)
T 1jsx_A           83 LSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPS----EPPFDGVISRAFASLNDMVSWCHHLPGEQ  158 (207)
T ss_dssp             HHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCC----CSCEEEEECSCSSSHHHHHHHHTTSEEEE
T ss_pred             HHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCc----cCCcCEEEEeccCCHHHHHHHHHHhcCCC
Confidence            99888889999999999999999999999998889999999988653    26899999999889999999999999999


Q ss_pred             eEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEEEecCCCCCceEEEEEEee
Q 026122          173 GLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKS  224 (243)
Q Consensus       173 G~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~v~~~k~  224 (243)
                      |.+++..+....+++.++.+     ||...++..+..+...+.+.+++++|.
T Consensus       159 G~l~~~~~~~~~~~~~~~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~k~  205 (207)
T 1jsx_A          159 GRFYALKGQMPEDEIALLPE-----EYQVESVVKLQVPALDGERHLVVIKAN  205 (207)
T ss_dssp             EEEEEEESSCCHHHHHTSCT-----TEEEEEEEEEECC--CCEEEEEEEEEC
T ss_pred             cEEEEEeCCCchHHHHHHhc-----CCceeeeeeeccCCCCCceEEEEEEec
Confidence            99999998877776655433     898888777777777788999888875

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.82  E-value=7.5e-19  Score=140.11  Aligned_cols=145  Identities=17%  Similarity=0.052  Sum_probs=105.3

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      +++.+|||+|||+|..++.++..  +.+|+|+|+|+.+++.|+++++.+++.++++++++..++....  +++||+|+++
T Consensus        21 ~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~--~~~fD~v~~~   96 (185)
T 3mti_A           21 DDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYV--REPIRAAIFN   96 (185)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTC--CSCEEEEEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhc--cCCcCEEEEe
Confidence            34889999999999999999876  6899999999999999999999999888999998888754321  3689999987


Q ss_pred             C-------------cccHHHHHHHHccCcccCeEEEEEeCCC---cH---HHHHHHHHHHHHhCCeeeEEEEEecCCCCC
Q 026122          154 A-------------VAEMRILAEYCLPLVRVGGLFVAAKGHD---PQ---EEVKNSERAVQLMGASLLQLCSVESQSPFG  214 (243)
Q Consensus       154 ~-------------~~~~~~~l~~~~~~LkpgG~l~~~~~~~---~~---~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  214 (243)
                      .             ......+++.+.++|||||++++..-..   ..   ..+.++.+.+...++.+.....+.  ..+.
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~  174 (185)
T 3mti_A           97 LGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGDMEKDAVLEYVIGLDQRVFTAMLYQPLN--QINT  174 (185)
T ss_dssp             EC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC------CHHHHHHHHHHHHSCTTTEEEEEEEESS--CSSC
T ss_pred             CCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEehhhc--cCCC
Confidence            2             1234678899999999999998765321   12   233333443344556666554422  3345


Q ss_pred             ceEEEEEEee
Q 026122          215 QRTAVVCLKS  224 (243)
Q Consensus       215 ~r~~v~~~k~  224 (243)
                      ...+++++|.
T Consensus       175 ~~~~~~i~~~  184 (185)
T 3mti_A          175 PPFLVMLEKL  184 (185)
T ss_dssp             CCEEEEEEEC
T ss_pred             CCeEEEEEec
Confidence            5677777664

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.80  E-value=2.3e-19  Score=152.57  Aligned_cols=124  Identities=21%  Similarity=0.355  Sum_probs=104.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      ++.+|||+|||+|..++.++...|+.+|+|+|+|+.+++.++++++.+++.+++++++|+.+...    .++||+|+++.
T Consensus       109 ~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~----~~~fD~Iv~np  184 (276)
T 2b3t_A          109 QPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALA----GQQFAMIVSNP  184 (276)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGT----TCCEEEEEECC
T ss_pred             CCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcc----cCCccEEEECC
Confidence            36799999999999999999888889999999999999999999999998889999999987432    26899999972


Q ss_pred             -----------------------------cccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEE
Q 026122          155 -----------------------------VAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLC  205 (243)
Q Consensus       155 -----------------------------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~  205 (243)
                                                   ...+..+++.+.+.|+|||.+++..+..+.+++.+   .+++.||..++..
T Consensus       185 Py~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~---~l~~~Gf~~v~~~  261 (276)
T 2b3t_A          185 PYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQ---AFILAGYHDVETC  261 (276)
T ss_dssp             CCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCHHHHHH---HHHHTTCTTCCEE
T ss_pred             CCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECchHHHHHHH---HHHHCCCcEEEEE
Confidence                                         02467899999999999999999888777666544   4558899766543

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.80  E-value=3.2e-18  Score=141.06  Aligned_cols=143  Identities=15%  Similarity=0.154  Sum_probs=109.3

Q ss_pred             CCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEE
Q 026122           74 NSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        74 ~~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      +++.+|||+||| +|..++.++... +.+|+|+|+|+.+++.++++++.+++ +++++++|+..+....  +++||+|++
T Consensus        54 ~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~~--~~~fD~I~~  129 (230)
T 3evz_A           54 RGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNS-NVRLVKSNGGIIKGVV--EGTFDVIFS  129 (230)
T ss_dssp             CSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTC-CCEEEECSSCSSTTTC--CSCEEEEEE
T ss_pred             CCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEeCCchhhhhcc--cCceeEEEE
Confidence            348899999999 999999999875 68999999999999999999999998 7999999976543221  268999999


Q ss_pred             cCc-----------------------ccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEEEec
Q 026122          153 RAV-----------------------AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVES  209 (243)
Q Consensus       153 ~~~-----------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~  209 (243)
                      +..                       ..+..+++.+.++|||||++++..... .....++.+.+++.|+.+..++.   
T Consensus       130 npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-~~~~~~~~~~l~~~g~~~~~~~~---  205 (230)
T 3evz_A          130 APPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDK-EKLLNVIKERGIKLGYSVKDIKF---  205 (230)
T ss_dssp             CCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESC-HHHHHHHHHHHHHTTCEEEEEEE---
T ss_pred             CCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEeccc-HhHHHHHHHHHHHcCCceEEEEe---
Confidence            731                       114889999999999999999876433 24556777888899997766543   


Q ss_pred             CCCCCceEEEEEEee
Q 026122          210 QSPFGQRTAVVCLKS  224 (243)
Q Consensus       210 ~~~~~~r~~v~~~k~  224 (243)
                      ......+.++.+.|.
T Consensus       206 ~~g~~~~~~l~f~~~  220 (230)
T 3evz_A          206 KVGTRWRHSLIFFKG  220 (230)
T ss_dssp             CCCC-CEEEEEEECC
T ss_pred             cCCCeEEEEEEEecc
Confidence            222334444455443

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.80  E-value=2.1e-18  Score=145.28  Aligned_cols=146  Identities=14%  Similarity=0.144  Sum_probs=114.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEEEc
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      ++.+|||+|||+|.+++.+++..+ .+|+|+|+++.+++.|+++++.+++. +++++++|+.++.... ..++||+|+++
T Consensus        49 ~~~~vLDlG~G~G~~~~~la~~~~-~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~-~~~~fD~Ii~n  126 (259)
T 3lpm_A           49 RKGKIIDLCSGNGIIPLLLSTRTK-AKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLI-PKERADIVTCN  126 (259)
T ss_dssp             SCCEEEETTCTTTHHHHHHHTTCC-CEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTS-CTTCEEEEEEC
T ss_pred             CCCEEEEcCCchhHHHHHHHHhcC-CcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhh-ccCCccEEEEC
Confidence            478999999999999999997754 49999999999999999999999986 5999999999876321 13789999996


Q ss_pred             Cc------------------------ccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEEEec
Q 026122          154 AV------------------------AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVES  209 (243)
Q Consensus       154 ~~------------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~  209 (243)
                      ..                        .++..+++.+.++|+|||++++..+.....+   +...+++.|+....+..+..
T Consensus       127 pPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~---~~~~l~~~~~~~~~~~~v~~  203 (259)
T 3lpm_A          127 PPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPERLLD---IIDIMRKYRLEPKRIQFVHP  203 (259)
T ss_dssp             CCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTTTHHH---HHHHHHHTTEEEEEEEEEES
T ss_pred             CCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHHHHHH---HHHHHHHCCCceEEEEEeec
Confidence            31                        2356799999999999999999877655444   55667789999988887662


Q ss_pred             -CCCCCceEEEEEEeeC
Q 026122          210 -QSPFGQRTAVVCLKSR  225 (243)
Q Consensus       210 -~~~~~~r~~v~~~k~~  225 (243)
                       +.....+.++...|..
T Consensus       204 ~~~~~~~~~l~~~~k~~  220 (259)
T 3lpm_A          204 RSDREANTVLVEGIKDG  220 (259)
T ss_dssp             STTSCCSEEEEEEEETC
T ss_pred             CCCCCcEEEEEEEEeCC
Confidence             3333355555555543

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.80  E-value=1e-18  Score=147.79  Aligned_cols=101  Identities=14%  Similarity=0.197  Sum_probs=87.3

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEE
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVA  150 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I  150 (243)
                      +++.+|||||||+|..++.+++..  ++++|+|||+|+.|++.|+++++..+.. +++++++|+.+++.     ++||+|
T Consensus        69 ~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~-----~~~d~v  143 (261)
T 4gek_A           69 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI-----ENASMV  143 (261)
T ss_dssp             CTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCC-----CSEEEE
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccc-----cccccc
Confidence            458899999999999999998764  5789999999999999999999988764 69999999998764     569999


Q ss_pred             EEcCc------ccHHHHHHHHccCcccCeEEEEEe
Q 026122          151 VARAV------AEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       151 ~~~~~------~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      +++..      .+...+++++++.|||||.+++..
T Consensus       144 ~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e  178 (261)
T 4gek_A          144 VLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSE  178 (261)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEe
Confidence            99752      245678999999999999998865

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.80  E-value=3.7e-18  Score=139.04  Aligned_cols=124  Identities=17%  Similarity=0.139  Sum_probs=105.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEEEc
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      ++.+|||+|||+|..++.+++.  +.+|+|+|+|+.+++.++++++.+++. +++++++|+.+.....   .+||+|+++
T Consensus        55 ~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~---~~~D~v~~~  129 (204)
T 3njr_A           55 RGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADL---PLPEAVFIG  129 (204)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTS---CCCSEEEEC
T ss_pred             CCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccC---CCCCEEEEC
Confidence            3789999999999999999876  689999999999999999999999998 8999999998843321   579999998


Q ss_pred             CcccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEE
Q 026122          154 AVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCS  206 (243)
Q Consensus       154 ~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~  206 (243)
                      ...+.. +++.+.+.|||||++++....  .+...++.+.+++.|+.+..+..
T Consensus       130 ~~~~~~-~l~~~~~~LkpgG~lv~~~~~--~~~~~~~~~~l~~~g~~i~~i~~  179 (204)
T 3njr_A          130 GGGSQA-LYDRLWEWLAPGTRIVANAVT--LESETLLTQLHARHGGQLLRIDI  179 (204)
T ss_dssp             SCCCHH-HHHHHHHHSCTTCEEEEEECS--HHHHHHHHHHHHHHCSEEEEEEE
T ss_pred             CcccHH-HHHHHHHhcCCCcEEEEEecC--cccHHHHHHHHHhCCCcEEEEEe
Confidence            765677 999999999999998886643  45566777888899988777654

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.80  E-value=4.4e-18  Score=137.90  Aligned_cols=121  Identities=14%  Similarity=0.125  Sum_probs=103.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      ++.+|||+|||+|..++.++...|+.+|+|+|+|+.+++.++++++.+++.+++++++|+.+.....   ++||+|+++.
T Consensus        40 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~---~~~D~i~~~~  116 (204)
T 3e05_A           40 DDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDL---PDPDRVFIGG  116 (204)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTS---CCCSEEEESC
T ss_pred             CCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcC---CCCCEEEECC
Confidence            3789999999999999999999888999999999999999999999999888999999997654321   6799999976


Q ss_pred             -cccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCe
Q 026122          155 -VAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGAS  200 (243)
Q Consensus       155 -~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~  200 (243)
                       ..++..+++.+.+.|+|||++++....  .....++.+.+++.||.
T Consensus       117 ~~~~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~~~l~~~g~~  161 (204)
T 3e05_A          117 SGGMLEEIIDAVDRRLKSEGVIVLNAVT--LDTLTKAVEFLEDHGYM  161 (204)
T ss_dssp             CTTCHHHHHHHHHHHCCTTCEEEEEECB--HHHHHHHHHHHHHTTCE
T ss_pred             CCcCHHHHHHHHHHhcCCCeEEEEEecc--cccHHHHHHHHHHCCCc
Confidence             457899999999999999999986543  34556677788899983

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.80  E-value=1.5e-18  Score=141.71  Aligned_cols=142  Identities=14%  Similarity=0.080  Sum_probs=112.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      ++.+|||+|||+|..+..++... +..+|+|+|+|+.+++.++++.+..++.+++++++|+.+++...   ++||+|+++
T Consensus        37 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~---~~fD~v~~~  113 (219)
T 3dh0_A           37 EGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPD---NTVDFIFMA  113 (219)
T ss_dssp             TTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCS---SCEEEEEEE
T ss_pred             CCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCC---CCeeEEEee
Confidence            37899999999999999999875 67899999999999999999999999888999999999876542   689999997


Q ss_pred             C----cccHHHHHHHHccCcccCeEEEEEeCCC----------cHHHHHHHHHHHHHhCCeeeEEEEEecCCCCCceEEE
Q 026122          154 A----VAEMRILAEYCLPLVRVGGLFVAAKGHD----------PQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAV  219 (243)
Q Consensus       154 ~----~~~~~~~l~~~~~~LkpgG~l~~~~~~~----------~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~v  219 (243)
                      .    ..+...+++++.++|+|||.+++.....          ..-...++.+.++++||++++...+.     .....+
T Consensus       114 ~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~-----~~~~~~  188 (219)
T 3dh0_A          114 FTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRVVEVG-----KYCFGV  188 (219)
T ss_dssp             SCGGGCSSHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEEEEET-----TTEEEE
T ss_pred             hhhhhcCCHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEEEeeC-----CceEEE
Confidence            5    3468999999999999999999875211          01123566777889999988775432     234455


Q ss_pred             EEEee
Q 026122          220 VCLKS  224 (243)
Q Consensus       220 ~~~k~  224 (243)
                      +++|.
T Consensus       189 ~~~k~  193 (219)
T 3dh0_A          189 YAMIV  193 (219)
T ss_dssp             EEECC
T ss_pred             EEEec
Confidence            55554

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.79  E-value=4.2e-18  Score=139.20  Aligned_cols=127  Identities=13%  Similarity=0.065  Sum_probs=104.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  155 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~  155 (243)
                      +.+|||||||+|..++.++...|+.+|+|||+|+.+++.++++++..++.+++++++|+.++.... ..++||+|+++..
T Consensus        42 ~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-~~~~~D~i~~~~~  120 (214)
T 1yzh_A           42 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYF-EDGEIDRLYLNFS  120 (214)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTS-CTTCCSEEEEESC
T ss_pred             CCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhc-CCCCCCEEEEECC
Confidence            679999999999999999999998999999999999999999999999888999999998865210 1267999999753


Q ss_pred             c------------cHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEE
Q 026122          156 A------------EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLC  205 (243)
Q Consensus       156 ~------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~  205 (243)
                      .            ....+++.+.++|+|||.+++....  ......+.+.+++.||......
T Consensus       121 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~~~~~~~g~~~~~~~  180 (214)
T 1yzh_A          121 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDN--RGLFEYSLVSFSQYGMKLNGVW  180 (214)
T ss_dssp             CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESC--HHHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCC--HHHHHHHHHHHHHCCCeeeecc
Confidence            2            1368999999999999999987653  2234556677788999876654

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.79  E-value=3.7e-18  Score=138.74  Aligned_cols=126  Identities=19%  Similarity=0.280  Sum_probs=104.3

Q ss_pred             CeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122           77 LKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVARA-  154 (243)
Q Consensus        77 ~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~~~~-  154 (243)
                      .+|||+|||+|..+..++.. ++.+|+|+|+|+.+++.++++++..++. +++++++|+.+++...   ++||+|+++. 
T Consensus        45 ~~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~D~v~~~~~  120 (219)
T 3dlc_A           45 GTCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIED---NYADLIVSRGS  120 (219)
T ss_dssp             EEEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCT---TCEEEEEEESC
T ss_pred             CEEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCc---ccccEEEECch
Confidence            39999999999999999987 7789999999999999999999998875 6999999999876542   7899999975 


Q ss_pred             ---cccHHHHHHHHccCcccCeEEEEEeCCCc---------------------------HHHHHHHHHHHHHhCCeeeEE
Q 026122          155 ---VAEMRILAEYCLPLVRVGGLFVAAKGHDP---------------------------QEEVKNSERAVQLMGASLLQL  204 (243)
Q Consensus       155 ---~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---------------------------~~~~~~~~~~l~~~g~~~~~~  204 (243)
                         ..+...+++++.++|+|||.+++......                           .....++.+.++++||+.+++
T Consensus       121 l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~  200 (219)
T 3dlc_A          121 VFFWEDVATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIGISSYEI  200 (219)
T ss_dssp             GGGCSCHHHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHHHHSSHHHHHHHHHHHHHHTCSSEEE
T ss_pred             HhhccCHHHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhhhccccCCHHHHHHHHHHcCCCeEEE
Confidence               34789999999999999999998752211                           112255677788999988776


Q ss_pred             EE
Q 026122          205 CS  206 (243)
Q Consensus       205 ~~  206 (243)
                      ..
T Consensus       201 ~~  202 (219)
T 3dlc_A          201 IL  202 (219)
T ss_dssp             EE
T ss_pred             Ee
Confidence            53

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.78  E-value=6.6e-18  Score=135.94  Aligned_cols=149  Identities=12%  Similarity=0.036  Sum_probs=110.1

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCC-CCEEEEEccccccccCCcCCCCceEEE
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      +++.+|||+|||+|..++.++... ++.+|+|+|+|+.+++.++++++.+++ .+++++++|+.++....  +++||+|+
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~--~~~fD~v~   98 (197)
T 3eey_A           21 KEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYI--DCPVKAVM   98 (197)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTC--CSCEEEEE
T ss_pred             CCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhc--cCCceEEE
Confidence            347899999999999999999875 567999999999999999999999988 57999999998875321  37899999


Q ss_pred             EcCcc-------------cHHHHHHHHccCcccCeEEEEEeC---CCcHHHHHHHHHHHH---HhCCeeeEEEEEecCCC
Q 026122          152 ARAVA-------------EMRILAEYCLPLVRVGGLFVAAKG---HDPQEEVKNSERAVQ---LMGASLLQLCSVESQSP  212 (243)
Q Consensus       152 ~~~~~-------------~~~~~l~~~~~~LkpgG~l~~~~~---~~~~~~~~~~~~~l~---~~g~~~~~~~~~~~~~~  212 (243)
                      ++..-             +...+++.+.++|||||++++..-   .....+...+.+.++   ..++.+.....+  ...
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~--~~~  176 (197)
T 3eey_A           99 FNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKGVDQKKFIVQRTDFI--NQA  176 (197)
T ss_dssp             EEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCBTTTBSHHHHHHHHHHTTSCTTTEEEEEEEET--TCC
T ss_pred             EcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccCCCCcHHHHHHHHHHHHhCCCCcEEEEEEEec--cCc
Confidence            86411             346799999999999999988752   122233333444443   445655554432  233


Q ss_pred             CCceEEEEEEeeCC
Q 026122          213 FGQRTAVVCLKSRR  226 (243)
Q Consensus       213 ~~~r~~v~~~k~~~  226 (243)
                      .....+++++++..
T Consensus       177 ~~pp~~~~~~~~~~  190 (197)
T 3eey_A          177 NCPPILVCIEKISE  190 (197)
T ss_dssp             SCCCEEEEEEECCS
T ss_pred             cCCCeEEEEEEccc
Confidence            45677888888754

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.78  E-value=4.6e-18  Score=143.36  Aligned_cols=130  Identities=15%  Similarity=0.158  Sum_probs=106.3

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEEE
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      +++.+|||||||+|..+..++.. ++++|+|+|+|+.+++.++++++..++. +++++++|+.+++..   .++||+|++
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~fD~i~~  120 (267)
T 3kkz_A           45 TEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFR---NEELDLIWS  120 (267)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCC---TTCEEEEEE
T ss_pred             CCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCC---CCCEEEEEE
Confidence            44889999999999999999877 6789999999999999999999999985 499999999987643   278999999


Q ss_pred             cCc---ccHHHHHHHHccCcccCeEEEEEeCC----CcHH--------------HHHHHHHHHHHhCCeeeEEEEE
Q 026122          153 RAV---AEMRILAEYCLPLVRVGGLFVAAKGH----DPQE--------------EVKNSERAVQLMGASLLQLCSV  207 (243)
Q Consensus       153 ~~~---~~~~~~l~~~~~~LkpgG~l~~~~~~----~~~~--------------~~~~~~~~l~~~g~~~~~~~~~  207 (243)
                      +..   .++..+++.+.++|||||.+++....    ....              ...++.+.++++||.+++...+
T Consensus       121 ~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~  196 (267)
T 3kkz_A          121 EGAIYNIGFERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYPEIDTIPNQVAKIHKAGYLPVATFIL  196 (267)
T ss_dssp             SSCGGGTCHHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCEEHHHHHHHHHHTTEEEEEEEEC
T ss_pred             cCCceecCHHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCEEEEEEEC
Confidence            752   27899999999999999999986521    1111              2345667788999998877653

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.78  E-value=5.6e-18  Score=141.62  Aligned_cols=130  Identities=13%  Similarity=0.165  Sum_probs=106.2

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccccccCCcCCCCceEEEE
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      +++.+|||||||+|..+..++...++ +|+|+|+|+.+++.++++++..++.+ ++++++|+.+++...   ++||+|++
T Consensus        45 ~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~fD~v~~  120 (257)
T 3f4k_A           45 TDDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQN---EELDLIWS  120 (257)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCT---TCEEEEEE
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCC---CCEEEEEe
Confidence            44789999999999999999988764 99999999999999999999999875 999999998876542   78999999


Q ss_pred             cC---cccHHHHHHHHccCcccCeEEEEEeCC----CcHH--------------HHHHHHHHHHHhCCeeeEEEEE
Q 026122          153 RA---VAEMRILAEYCLPLVRVGGLFVAAKGH----DPQE--------------EVKNSERAVQLMGASLLQLCSV  207 (243)
Q Consensus       153 ~~---~~~~~~~l~~~~~~LkpgG~l~~~~~~----~~~~--------------~~~~~~~~l~~~g~~~~~~~~~  207 (243)
                      +.   ..+...+++.+.++|||||.+++....    ....              ...++.+.++++||.++....+
T Consensus       121 ~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~  196 (257)
T 3f4k_A          121 EGAIYNIGFERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVIPTCIDKMERAGYTPTAHFIL  196 (257)
T ss_dssp             ESCSCCCCHHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCCBHHHHHHHHHHTTEEEEEEEEC
T ss_pred             cChHhhcCHHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCeEEEEEEC
Confidence            75   226899999999999999999987521    1111              2345677788999988876543

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.78  E-value=2.1e-18  Score=147.55  Aligned_cols=144  Identities=13%  Similarity=0.074  Sum_probs=103.6

Q ss_pred             CCCCCCeEEEEcCCCChHH-HHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEE
Q 026122           72 SCNSNLKLVDVGTGAGLPG-LVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVA  150 (243)
Q Consensus        72 ~~~~~~~VLDiGcG~G~~~-~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I  150 (243)
                      .++++.+|||||||+|..+ +.+| ..++++|+|||+|+++++.|++++++.++.+++++++|+.+++  .   ++||+|
T Consensus       119 ~l~~g~rVLDIGcG~G~~ta~~lA-~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~--d---~~FDvV  192 (298)
T 3fpf_A          119 RFRRGERAVFIGGGPLPLTGILLS-HVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID--G---LEFDVL  192 (298)
T ss_dssp             TCCTTCEEEEECCCSSCHHHHHHH-HTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG--G---CCCSEE
T ss_pred             CCCCcCEEEEECCCccHHHHHHHH-HccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC--C---CCcCEE
Confidence            3566999999999998765 4445 4468999999999999999999999988877999999999875  1   789999


Q ss_pred             EEcC-cccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEEEecCCCCCceEEEEEEee
Q 026122          151 VARA-VAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKS  224 (243)
Q Consensus       151 ~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~v~~~k~  224 (243)
                      ++.+ ..+...+++++.+.|||||++++........-+..........||.....   ..+..+....+++++|.
T Consensus       193 ~~~a~~~d~~~~l~el~r~LkPGG~Lvv~~~~~~r~~l~~~v~~~~~~gf~~~~~---~~p~~~v~N~vv~a~k~  264 (298)
T 3fpf_A          193 MVAALAEPKRRVFRNIHRYVDTETRIIYRTYTGMRAILYAPVSDDDITGFRRAGV---VLPSGKVNNTSVLVFKC  264 (298)
T ss_dssp             EECTTCSCHHHHHHHHHHHCCTTCEEEEEECCGGGGGSSCCCCTGGGTTEEEEEE---ECCCTTCCCEEEEEEEC
T ss_pred             EECCCccCHHHHHHHHHHHcCCCcEEEEEcCcchhhhccccCChhhhhhhhheeE---ECCCCCcCcEEEEEEcc
Confidence            9865 45788999999999999999998764321110000000001336655433   23444445556666554

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.77  E-value=8.3e-18  Score=137.79  Aligned_cols=126  Identities=17%  Similarity=0.092  Sum_probs=101.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  155 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~  155 (243)
                      +.+|||||||+|..++.+|+..|+.+|+|||+|+.+++.|+++++..++.|++++++|+.++.... ..++||.|+++..
T Consensus        39 ~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~-~~~~~d~v~~~~~  117 (213)
T 2fca_A           39 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVF-EPGEVKRVYLNFS  117 (213)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHC-CTTSCCEEEEESC
T ss_pred             CceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhc-CcCCcCEEEEECC
Confidence            679999999999999999999899999999999999999999999999988999999998864110 1267999988532


Q ss_pred             cc------------HHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEE
Q 026122          156 AE------------MRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQL  204 (243)
Q Consensus       156 ~~------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~  204 (243)
                      ..            ...+++.+.++|||||.+++....  ......+.+.++..|+.....
T Consensus       118 ~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~--~~~~~~~~~~~~~~g~~~~~~  176 (213)
T 2fca_A          118 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDN--RGLFEYSLKSFSEYGLLLTYV  176 (213)
T ss_dssp             CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESC--HHHHHHHHHHHHHHTCEEEEE
T ss_pred             CCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCC--HHHHHHHHHHHHHCCCccccc
Confidence            11            368999999999999999987643  223344566677889876543

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.77  E-value=6.7e-18  Score=142.53  Aligned_cols=148  Identities=16%  Similarity=0.204  Sum_probs=111.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH---cCCC-CEEEEEccccccccC----CcCCCC
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSL---TQLL-NVQIVRGRAETLGKD----VSFREQ  146 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~---~~~~-~v~~~~~d~~~~~~~----~~~~~~  146 (243)
                      ++.+|||+|||+|.+++.++...|+.+|+|||+++.+++.++++++.   +++. +++++++|+.+....    ....++
T Consensus        36 ~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~  115 (260)
T 2ozv_A           36 RACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDEH  115 (260)
T ss_dssp             SCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTTC
T ss_pred             CCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCCC
Confidence            37799999999999999999998888999999999999999999988   8886 499999999887210    001268


Q ss_pred             ceEEEEcC----------------------cccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEE
Q 026122          147 YDVAVARA----------------------VAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQL  204 (243)
Q Consensus       147 fD~I~~~~----------------------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~  204 (243)
                      ||+|+++.                      ...+..+++.+.++|+|||+++++.+...   ..++.+.+++. |....+
T Consensus       116 fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---~~~~~~~l~~~-~~~~~i  191 (260)
T 2ozv_A          116 FHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQS---VAEIIAACGSR-FGGLEI  191 (260)
T ss_dssp             EEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGGG---HHHHHHHHTTT-EEEEEE
T ss_pred             cCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHHH---HHHHHHHHHhc-CCceEE
Confidence            99999972                      11378899999999999999999887553   34455555554 766666


Q ss_pred             EEEe-cCCCCCceEEEEEEeeCC
Q 026122          205 CSVE-SQSPFGQRTAVVCLKSRR  226 (243)
Q Consensus       205 ~~~~-~~~~~~~r~~v~~~k~~~  226 (243)
                      ..+. .......+.++...|..+
T Consensus       192 ~~v~~~~~~~~~~~lv~~~k~~~  214 (260)
T 2ozv_A          192 TLIHPRPGEDAVRMLVTAIKGSR  214 (260)
T ss_dssp             EEEESSTTSCCCEEEEEEEETCC
T ss_pred             EEEcCCCCCCceEEEEEEEeCCC
Confidence            6554 223333555555566443

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.77  E-value=3.2e-18  Score=143.70  Aligned_cols=129  Identities=16%  Similarity=0.185  Sum_probs=104.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      ++.+|||||||+|..+..++...  .+|+|+|+|+.+++.++++++..++.+++++++|+++++..+   ++||+|+++.
T Consensus        37 ~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~---~~fD~V~~~~  111 (260)
T 1vl5_A           37 GNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTD---ERFHIVTCRI  111 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCT---TCEEEEEEES
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCC---CCEEEEEEhh
Confidence            37899999999999998888764  499999999999999999999988888999999999876542   7899999975


Q ss_pred             ----cccHHHHHHHHccCcccCeEEEEEe--CCCc--------------------HHHHHHHHHHHHHhCCeeeEEEEEe
Q 026122          155 ----VAEMRILAEYCLPLVRVGGLFVAAK--GHDP--------------------QEEVKNSERAVQLMGASLLQLCSVE  208 (243)
Q Consensus       155 ----~~~~~~~l~~~~~~LkpgG~l~~~~--~~~~--------------------~~~~~~~~~~l~~~g~~~~~~~~~~  208 (243)
                          +.+...+++++.++|||||.+++..  ....                    .....++.+.++++||.+.......
T Consensus       112 ~l~~~~d~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~  191 (260)
T 1vl5_A          112 AAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEELHCFH  191 (260)
T ss_dssp             CGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHHTCEEEEEEEEE
T ss_pred             hhHhcCCHHHHHHHHHHHcCCCCEEEEEEcCCCCCHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHCCCeEEEEEEee
Confidence                4478999999999999999999864  2111                    0112456677889999987776543

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.77  E-value=4.4e-18  Score=142.15  Aligned_cols=126  Identities=14%  Similarity=0.148  Sum_probs=103.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEEEc
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      ++.+|||||||+|..+..++... +.+|+|+|+|+.+++.++++++..++. +++++++|+.+++.    +++||+|++.
T Consensus        36 ~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~----~~~fD~V~~~  110 (256)
T 1nkv_A           36 PGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA----NEKCDVAACV  110 (256)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC----SSCEEEEEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc----CCCCCEEEEC
Confidence            37899999999999999999876 679999999999999999999998885 69999999998764    2789999986


Q ss_pred             C----cccHHHHHHHHccCcccCeEEEEEeCC----CcHH---------------HHHHHHHHHHHhCCeeeEEE
Q 026122          154 A----VAEMRILAEYCLPLVRVGGLFVAAKGH----DPQE---------------EVKNSERAVQLMGASLLQLC  205 (243)
Q Consensus       154 ~----~~~~~~~l~~~~~~LkpgG~l~~~~~~----~~~~---------------~~~~~~~~l~~~g~~~~~~~  205 (243)
                      .    ..+...+++++.++|||||.+++....    ....               ...++.+.++++||..++..
T Consensus       111 ~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~  185 (256)
T 1nkv_A          111 GATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDVVEMV  185 (256)
T ss_dssp             SCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHHTTTBCCCEEE
T ss_pred             CChHhcCCHHHHHHHHHHHcCCCeEEEEecCcccCCCChHHHHHHHhcccccccCCHHHHHHHHHHCCCeeEEEE
Confidence            4    336789999999999999999986521    1011               12456778889999887654

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.77  E-value=6.4e-18  Score=142.92  Aligned_cols=133  Identities=14%  Similarity=0.157  Sum_probs=109.8

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      +++.+|||||||+|..+..++...|+.+|+|+|+|+.+++.++++....++.+++++++|+.+++...   ++||+|+++
T Consensus        36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~---~~fD~v~~~  112 (276)
T 3mgg_A           36 PPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFED---SSFDHIFVC  112 (276)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCT---TCEEEEEEE
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCC---CCeeEEEEe
Confidence            34889999999999999999999888999999999999999999999999888999999999876543   789999997


Q ss_pred             C----cccHHHHHHHHccCcccCeEEEEEeCC--------CcHH--------------------HHHHHHHHHHHhCCee
Q 026122          154 A----VAEMRILAEYCLPLVRVGGLFVAAKGH--------DPQE--------------------EVKNSERAVQLMGASL  201 (243)
Q Consensus       154 ~----~~~~~~~l~~~~~~LkpgG~l~~~~~~--------~~~~--------------------~~~~~~~~l~~~g~~~  201 (243)
                      .    +.+...+++.+.++|||||.+++....        ....                    ...++.+.++++||..
T Consensus       113 ~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~  192 (276)
T 3mgg_A          113 FVLEHLQSPEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQESGFEK  192 (276)
T ss_dssp             SCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHHHHTTCCTTGGGGHHHHHHHTTCEE
T ss_pred             chhhhcCCHHHHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHCCCCe
Confidence            5    447889999999999999999986521        1000                    0134556788999999


Q ss_pred             eEEEEEec
Q 026122          202 LQLCSVES  209 (243)
Q Consensus       202 ~~~~~~~~  209 (243)
                      +++.....
T Consensus       193 v~~~~~~~  200 (276)
T 3mgg_A          193 IRVEPRMV  200 (276)
T ss_dssp             EEEEEEEE
T ss_pred             EEEeeEEE
Confidence            88876553

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.76  E-value=4.2e-17  Score=128.68  Aligned_cols=126  Identities=16%  Similarity=0.091  Sum_probs=101.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      +.+|||+|||+|..+..++...|+.+|+++|+|+.+++.++++++.+++. ++ ++++|..+....  ..++||+|+++.
T Consensus        26 ~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~--~~~~~D~i~~~~  102 (178)
T 3hm2_A           26 HETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDD--VPDNPDVIFIGG  102 (178)
T ss_dssp             TEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGG--CCSCCSEEEECC
T ss_pred             CCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhc--cCCCCCEEEECC
Confidence            77999999999999999998888899999999999999999999999987 78 888888552221  126799999976


Q ss_pred             cccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEE
Q 026122          155 VAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCS  206 (243)
Q Consensus       155 ~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~  206 (243)
                      ......+++.+.+.|+|||++++....  .+....+.+.++..|+.+..+..
T Consensus       103 ~~~~~~~l~~~~~~L~~gG~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  152 (178)
T 3hm2_A          103 GLTAPGVFAAAWKRLPVGGRLVANAVT--VESEQMLWALRKQFGGTISSFAI  152 (178)
T ss_dssp             -TTCTTHHHHHHHTCCTTCEEEEEECS--HHHHHHHHHHHHHHCCEEEEEEE
T ss_pred             cccHHHHHHHHHHhcCCCCEEEEEeec--cccHHHHHHHHHHcCCeeEEEEe
Confidence            444478999999999999998876543  23445566777888987766543

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.76  E-value=1e-17  Score=142.79  Aligned_cols=126  Identities=16%  Similarity=0.168  Sum_probs=105.7

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccccccCCcCCCCceEEE
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      ++++.+|||+|||+|..++.+|...+. +|+|+|+|+.+++.++++++.+++.+ ++++++|+.++..    .++||+|+
T Consensus       123 ~~~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~----~~~fD~Vi  197 (278)
T 2frn_A          123 AKPDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG----ENIADRIL  197 (278)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC----CSCEEEEE
T ss_pred             CCCCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc----cCCccEEE
Confidence            355889999999999999999987544 89999999999999999999999876 9999999998765    27899999


Q ss_pred             EcCcccHHHHHHHHccCcccCeEEEEEeCC----CcHHHHHHHHHHHHHhCCeeeE
Q 026122          152 ARAVAEMRILAEYCLPLVRVGGLFVAAKGH----DPQEEVKNSERAVQLMGASLLQ  203 (243)
Q Consensus       152 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~----~~~~~~~~~~~~l~~~g~~~~~  203 (243)
                      ++.......+++.+.++|+|||.+++....    ........+.+.+++.|+.+..
T Consensus       198 ~~~p~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~~  253 (278)
T 2frn_A          198 MGYVVRTHEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEK  253 (278)
T ss_dssp             ECCCSSGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEE
T ss_pred             ECCchhHHHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHHcCCeeEE
Confidence            987666678899999999999999986632    1234456667778899998766

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.76  E-value=1.1e-17  Score=137.59  Aligned_cols=138  Identities=17%  Similarity=0.168  Sum_probs=108.6

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-----CEEEEEccccccccCCcCCCCc
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-----NVQIVRGRAETLGKDVSFREQY  147 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-----~v~~~~~d~~~~~~~~~~~~~f  147 (243)
                      ++++.+|||+|||+|..+..++..  +.+|+|+|+|+.+++.++++.+..++.     +++++++|+.+++...   ++|
T Consensus        28 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~  102 (235)
T 3sm3_A           28 LQEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHD---SSF  102 (235)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCT---TCE
T ss_pred             CCCCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCC---Cce
Confidence            345889999999999999888876  679999999999999999998877762     5899999999876542   789


Q ss_pred             eEEEEcC----cccHH---HHHHHHccCcccCeEEEEEeC-CC-------------------------------------
Q 026122          148 DVAVARA----VAEMR---ILAEYCLPLVRVGGLFVAAKG-HD-------------------------------------  182 (243)
Q Consensus       148 D~I~~~~----~~~~~---~~l~~~~~~LkpgG~l~~~~~-~~-------------------------------------  182 (243)
                      |+|++..    ..+..   .+++.+.++|+|||.+++... ..                                     
T Consensus       103 D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (235)
T 3sm3_A          103 DFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKRYLHDFPITKEEGSFLARDPETGETEFIA  182 (235)
T ss_dssp             EEEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHHHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEE
T ss_pred             eEEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHHHHHHhhhhccchhhhcceEecccccCCcceee
Confidence            9999965    22444   899999999999999988642 11                                     


Q ss_pred             cHHHHHHHHHHHHHhCCeeeEEEEEecCCCCCc
Q 026122          183 PQEEVKNSERAVQLMGASLLQLCSVESQSPFGQ  215 (243)
Q Consensus       183 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~  215 (243)
                      ..-...++.+.++++||.++++.........+.
T Consensus       183 ~~~~~~~l~~ll~~aGf~~~~~~~~~~~~~~g~  215 (235)
T 3sm3_A          183 HHFTEKELVFLLTDCRFEIDYFRVKELETRTGN  215 (235)
T ss_dssp             ECBCHHHHHHHHHTTTEEEEEEEEEEEECTTSC
T ss_pred             EeCCHHHHHHHHHHcCCEEEEEEecceeeccCC
Confidence            011245667778899999999887766555554

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.76  E-value=3.8e-17  Score=134.88  Aligned_cols=142  Identities=12%  Similarity=0.010  Sum_probs=108.2

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccccccCCcCCCCceEEE
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      ++++.+|+|||||+|.+++.+|+..|..+|+|+|+++.+++.|++|++.+++.+ ++++.+|..+....   .++||+|+
T Consensus        13 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~---~~~~D~Iv   89 (225)
T 3kr9_A           13 VSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEE---TDQVSVIT   89 (225)
T ss_dssp             SCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG---GGCCCEEE
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhccc---CcCCCEEE
Confidence            455889999999999999999988778899999999999999999999999974 99999999653221   13699888


Q ss_pred             EcCc-c-cHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEEEecCCCCCceEEEEEEe
Q 026122          152 ARAV-A-EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLK  223 (243)
Q Consensus       152 ~~~~-~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~v~~~k  223 (243)
                      ..+. . .+..+++.+.+.|+++|++++... ...   ..+.+++.+.||.+.+..-+.  .......++.+.+
T Consensus        90 iaG~Gg~~i~~Il~~~~~~L~~~~~lVlq~~-~~~---~~vr~~L~~~Gf~i~~e~lv~--e~~~~Yeii~~~~  157 (225)
T 3kr9_A           90 IAGMGGRLIARILEEGLGKLANVERLILQPN-NRE---DDLRIWLQDHGFQIVAESILE--EAGKFYEILVVEA  157 (225)
T ss_dssp             EEEECHHHHHHHHHHTGGGCTTCCEEEEEES-SCH---HHHHHHHHHTTEEEEEEEEEE--ETTEEEEEEEEEE
T ss_pred             EcCCChHHHHHHHHHHHHHhCCCCEEEEECC-CCH---HHHHHHHHHCCCEEEEEEEEE--ECCEEEEEEEEEe
Confidence            6442 2 368999999999999999887444 333   445666779999988765333  1222344555554

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.76  E-value=5.6e-17  Score=134.15  Aligned_cols=143  Identities=9%  Similarity=-0.017  Sum_probs=109.6

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccccccCCcCCCCceEEE
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      ++++.+|+|||||+|.+++.+++..+..+|+|+|+++.+++.|++|++.+++.+ ++++++|..+.....   ++||+|+
T Consensus        19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~---~~~D~Iv   95 (230)
T 3lec_A           19 VPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEA---DNIDTIT   95 (230)
T ss_dssp             SCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGG---GCCCEEE
T ss_pred             CCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccc---cccCEEE
Confidence            455889999999999999999988777899999999999999999999999965 999999998865431   3799987


Q ss_pred             EcCc-c-cHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEEEecCCCCCceEEEEEEee
Q 026122          152 ARAV-A-EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKS  224 (243)
Q Consensus       152 ~~~~-~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~v~~~k~  224 (243)
                      ..+. . .+..+++...+.|+++|+|++.-. ..   ...+++++.+.||.+.+..-+.  .......++.+.+.
T Consensus        96 iaGmGg~lI~~IL~~~~~~l~~~~~lIlqp~-~~---~~~lr~~L~~~Gf~i~~E~lv~--e~~~~Yeii~~~~~  164 (230)
T 3lec_A           96 ICGMGGRLIADILNNDIDKLQHVKTLVLQPN-NR---EDDLRKWLAANDFEIVAEDILT--ENDKRYEILVVKHG  164 (230)
T ss_dssp             EEEECHHHHHHHHHHTGGGGTTCCEEEEEES-SC---HHHHHHHHHHTTEEEEEEEEEE--C--CEEEEEEEEEC
T ss_pred             EeCCchHHHHHHHHHHHHHhCcCCEEEEECC-CC---hHHHHHHHHHCCCEEEEEEEEE--ECCEEEEEEEEEeC
Confidence            5443 2 478899999999999999776443 33   3445667779999988765433  22334555555543

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.75  E-value=1.6e-17  Score=138.00  Aligned_cols=130  Identities=13%  Similarity=0.195  Sum_probs=105.0

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      +++.+|||+|||+|..+..++...  .+|+|+|+|+.+++.++++++..++.+++++++|+++++..+   ++||+|+++
T Consensus        20 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~---~~fD~v~~~   94 (239)
T 1xxl_A           20 RAEHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPD---DSFDIITCR   94 (239)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCT---TCEEEEEEE
T ss_pred             CCCCEEEEEccCcCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCC---CcEEEEEEC
Confidence            348899999999999998888764  599999999999999999999988888999999999876542   789999997


Q ss_pred             C----cccHHHHHHHHccCcccCeEEEEEeCCC-cH---------------------HHHHHHHHHHHHhCCeeeEEEEE
Q 026122          154 A----VAEMRILAEYCLPLVRVGGLFVAAKGHD-PQ---------------------EEVKNSERAVQLMGASLLQLCSV  207 (243)
Q Consensus       154 ~----~~~~~~~l~~~~~~LkpgG~l~~~~~~~-~~---------------------~~~~~~~~~l~~~g~~~~~~~~~  207 (243)
                      .    +.+...+++++.++|||||.+++..... ..                     ....++.+.++++||.++.+...
T Consensus        95 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~~~~~~~  174 (239)
T 1xxl_A           95 YAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQDIQKW  174 (239)
T ss_dssp             SCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHTTEEEEEEEEE
T ss_pred             CchhhccCHHHHHHHHHHHcCCCcEEEEEEcCCCCChhHHHHHHHHHHhccccccCCCCHHHHHHHHHHCCCcEEEEEee
Confidence            4    3478999999999999999999865211 10                     11245667778899988777654


Q ss_pred             e
Q 026122          208 E  208 (243)
Q Consensus       208 ~  208 (243)
                      .
T Consensus       175 ~  175 (239)
T 1xxl_A          175 N  175 (239)
T ss_dssp             E
T ss_pred             c
Confidence            3

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.75  E-value=3.2e-17  Score=139.41  Aligned_cols=129  Identities=17%  Similarity=0.215  Sum_probs=104.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      +.+|||||||+|..+..++..  +.+|+|+|+|+.+++.++++++..++ .+++++++|+.+++...  +++||+|++..
T Consensus        69 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~--~~~fD~v~~~~  144 (285)
T 4htf_A           69 KLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHL--ETPVDLILFHA  144 (285)
T ss_dssp             CCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGC--SSCEEEEEEES
T ss_pred             CCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhc--CCCceEEEECc
Confidence            679999999999999888876  67999999999999999999998888 57999999999886221  37899999975


Q ss_pred             ----cccHHHHHHHHccCcccCeEEEEEeCCCc-------------------------------HHHHHHHHHHHHHhCC
Q 026122          155 ----VAEMRILAEYCLPLVRVGGLFVAAKGHDP-------------------------------QEEVKNSERAVQLMGA  199 (243)
Q Consensus       155 ----~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-------------------------------~~~~~~~~~~l~~~g~  199 (243)
                          +.+...+++++.++|||||.+++......                               .-...++.+.++++||
T Consensus       145 ~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf  224 (285)
T 4htf_A          145 VLEWVADPRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKKRTLSPDYPRDPTQVYLWLEEAGW  224 (285)
T ss_dssp             CGGGCSCHHHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCCCC----CCCSCCBCHHHHHHHHHHTTC
T ss_pred             hhhcccCHHHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcCHHHHhhhccccccccCCCCCCCCHHHHHHHHHHCCC
Confidence                34789999999999999999988652110                               0112456777889999


Q ss_pred             eeeEEEEEe
Q 026122          200 SLLQLCSVE  208 (243)
Q Consensus       200 ~~~~~~~~~  208 (243)
                      .+++...+.
T Consensus       225 ~v~~~~~~~  233 (285)
T 4htf_A          225 QIMGKTGVR  233 (285)
T ss_dssp             EEEEEEEES
T ss_pred             ceeeeeeEE
Confidence            999887754

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.75  E-value=1.7e-17  Score=136.89  Aligned_cols=99  Identities=20%  Similarity=0.349  Sum_probs=85.4

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      ++.+|||+|||+|..+..++...|+.+|+|+|+|+.+++.++++....+  +++++++|+.+++..    ++||+|++..
T Consensus        44 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~d~~~~~~~----~~fD~v~~~~  117 (234)
T 3dtn_A           44 ENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL--KVKYIEADYSKYDFE----EKYDMVVSAL  117 (234)
T ss_dssp             SSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT--TEEEEESCTTTCCCC----SCEEEEEEES
T ss_pred             CCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC--CEEEEeCchhccCCC----CCceEEEEeC
Confidence            3789999999999999999999888999999999999999998876555  799999999987653    6899999975


Q ss_pred             c----cc--HHHHHHHHccCcccCeEEEEEe
Q 026122          155 V----AE--MRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       155 ~----~~--~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      .    .+  ...+++++.++|||||.+++..
T Consensus       118 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  148 (234)
T 3dtn_A          118 SIHHLEDEDKKELYKRSYSILKESGIFINAD  148 (234)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            2    22  3369999999999999999876

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.75  E-value=1.8e-17  Score=137.13  Aligned_cols=141  Identities=18%  Similarity=0.137  Sum_probs=104.1

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccc----cccCCcCCCCceE
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAET----LGKDVSFREQYDV  149 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~----~~~~~~~~~~fD~  149 (243)
                      +++.+|||+|||+|..+..++...+..+|+|+|+|+.+++.++++++.+  .+++++.+|+.+    .+.    .++||+
T Consensus        73 ~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~----~~~~D~  146 (230)
T 1fbn_A           73 KRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER--ENIIPILGDANKPQEYANI----VEKVDV  146 (230)
T ss_dssp             CTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC--TTEEEEECCTTCGGGGTTT----SCCEEE
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC--CCeEEEECCCCCccccccc----CccEEE
Confidence            3478999999999999999998877789999999999999999887655  579999999987    332    267999


Q ss_pred             EEEcCccc---HHHHHHHHccCcccCeEEEEEeC---CCc---HHH-H-HHHHHHHHHhCCeeeEEEEEecCCCCCceEE
Q 026122          150 AVARAVAE---MRILAEYCLPLVRVGGLFVAAKG---HDP---QEE-V-KNSERAVQLMGASLLQLCSVESQSPFGQRTA  218 (243)
Q Consensus       150 I~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~---~~~---~~~-~-~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~  218 (243)
                      |+... .+   ...+++.+.+.|||||++++...   ...   ... . .++. .++..||.+.+...+  .....++.+
T Consensus       147 v~~~~-~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~l~-~l~~~Gf~~~~~~~~--~~~~~~~~~  222 (230)
T 1fbn_A          147 IYEDV-AQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKE-ILEAGGFKIVDEVDI--EPFEKDHVM  222 (230)
T ss_dssp             EEECC-CSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHH-HHHHHTEEEEEEEEC--TTTSTTEEE
T ss_pred             EEEec-CChhHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCCCHHHhhHHHHH-HHHHCCCEEEEEEcc--CCCccceEE
Confidence            99642 23   37789999999999999988531   111   111 1 3333 678899988776543  222345666


Q ss_pred             EEEEee
Q 026122          219 VVCLKS  224 (243)
Q Consensus       219 v~~~k~  224 (243)
                      ++++|.
T Consensus       223 v~~~k~  228 (230)
T 1fbn_A          223 FVGIWE  228 (230)
T ss_dssp             EEEEEC
T ss_pred             EEEEeC
Confidence            666664

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.75  E-value=2.1e-17  Score=134.91  Aligned_cols=140  Identities=15%  Similarity=0.124  Sum_probs=102.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC-cCCCCceEEEEcC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-SFREQYDVAVARA  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-~~~~~fD~I~~~~  154 (243)
                      +.+|||+|||+|..+..++..  +.+|+|+|+|+.+++.++++      .++++..+|+.++.... ...++||+|+++.
T Consensus        53 ~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~  124 (227)
T 3e8s_A           53 PERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAA------GAGEVHLASYAQLAEAKVPVGKDYDLICANF  124 (227)
T ss_dssp             CSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHT------CSSCEEECCHHHHHTTCSCCCCCEEEEEEES
T ss_pred             CCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHh------cccccchhhHHhhcccccccCCCccEEEECc
Confidence            689999999999999888865  67999999999999988876      34778888888872111 1124599999965


Q ss_pred             ---cccHHHHHHHHccCcccCeEEEEEeCCC-c----------------------------HHHHHHHHHHHHHhCCeee
Q 026122          155 ---VAEMRILAEYCLPLVRVGGLFVAAKGHD-P----------------------------QEEVKNSERAVQLMGASLL  202 (243)
Q Consensus       155 ---~~~~~~~l~~~~~~LkpgG~l~~~~~~~-~----------------------------~~~~~~~~~~l~~~g~~~~  202 (243)
                         ..+...+++.+.++|+|||.+++..... .                            .....++.+.++++||.++
T Consensus       125 ~l~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~  204 (227)
T 3e8s_A          125 ALLHQDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAGLRLV  204 (227)
T ss_dssp             CCCSSCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTTEEEE
T ss_pred             hhhhhhHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHHHcCCeEE
Confidence               3467899999999999999999865210 0                            0135677888889999998


Q ss_pred             EEEEEecCCCCCceEEEEEEe
Q 026122          203 QLCSVESQSPFGQRTAVVCLK  223 (243)
Q Consensus       203 ~~~~~~~~~~~~~r~~v~~~k  223 (243)
                      ++.....+.......++++.+
T Consensus       205 ~~~~~~~~~~~~~~~~~~va~  225 (227)
T 3e8s_A          205 SLQEPQHPQSAVPQSLLMVAE  225 (227)
T ss_dssp             EEECCCCTTCSSCSCEEEEEE
T ss_pred             EEecCCCCCCCCceeEEEEee
Confidence            877644333322334444443

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.75  E-value=2.2e-17  Score=142.51  Aligned_cols=131  Identities=14%  Similarity=0.075  Sum_probs=107.0

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEE
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      +.++.+|||+|||+|..+..++... +++|+|+|+|+.+++.++++++..++. +++++++|+.+++...   ++||+|+
T Consensus       115 ~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~---~~fD~V~  190 (312)
T 3vc1_A          115 AGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDK---GAVTASW  190 (312)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCT---TCEEEEE
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCC---CCEeEEE
Confidence            3458899999999999999999875 579999999999999999999999986 6999999999876432   7899999


Q ss_pred             EcCc---ccHHHHHHHHccCcccCeEEEEEeCC--C-c---H--------------HHHHHHHHHHHHhCCeeeEEEEE
Q 026122          152 ARAV---AEMRILAEYCLPLVRVGGLFVAAKGH--D-P---Q--------------EEVKNSERAVQLMGASLLQLCSV  207 (243)
Q Consensus       152 ~~~~---~~~~~~l~~~~~~LkpgG~l~~~~~~--~-~---~--------------~~~~~~~~~l~~~g~~~~~~~~~  207 (243)
                      ++..   .++..+++++.++|||||++++....  . .   .              ....++.+.++++||.+++...+
T Consensus       191 ~~~~l~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~~~~  269 (312)
T 3vc1_A          191 NNESTMYVDLHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFECNIHSRREYLRAMADNRLVPHTIVDL  269 (312)
T ss_dssp             EESCGGGSCHHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHHHTCCCCBHHHHHHHHHTTTEEEEEEEEC
T ss_pred             ECCchhhCCHHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHhhhcCCCCCHHHHHHHHHHCCCEEEEEEeC
Confidence            9642   25899999999999999999987621  1 0   0              02345677888999998887764

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.74  E-value=1.5e-16  Score=130.20  Aligned_cols=130  Identities=16%  Similarity=0.053  Sum_probs=93.1

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      +++.+|||+|||+|..+..++...++++|+|+|+|+.+++.+.+.++..  .|+.++.+|+.+........++||+|+++
T Consensus        56 ~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~--~~v~~~~~d~~~~~~~~~~~~~fD~V~~~  133 (210)
T 1nt2_A           56 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER--NNIIPLLFDASKPWKYSGIVEKVDLIYQD  133 (210)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC--SSEEEECSCTTCGGGTTTTCCCEEEEEEC
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC--CCeEEEEcCCCCchhhcccccceeEEEEe
Confidence            4488999999999999999998876679999999999987766666543  46889999987742100112689999997


Q ss_pred             Ccc--cHHHHHHHHccCcccCeEEEEEeC------CCcHHHHH-HHHHHHHHhCCeeeEEEE
Q 026122          154 AVA--EMRILAEYCLPLVRVGGLFVAAKG------HDPQEEVK-NSERAVQLMGASLLQLCS  206 (243)
Q Consensus       154 ~~~--~~~~~l~~~~~~LkpgG~l~~~~~------~~~~~~~~-~~~~~l~~~g~~~~~~~~  206 (243)
                      ...  ....+++++.++|||||++++...      ....+++. +..+.+++. |.+.+...
T Consensus       134 ~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~-f~~~~~~~  194 (210)
T 1nt2_A          134 IAQKNQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEMEGD-FKIVKHGS  194 (210)
T ss_dssp             CCSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHHHHTT-SEEEEEEE
T ss_pred             ccChhHHHHHHHHHHHHhCCCCEEEEEEecCCccccCCHHHHHHHHHHHHHhh-cEEeeeec
Confidence            532  234568999999999999998741      11223321 223346777 88777654

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.74  E-value=3.1e-17  Score=134.00  Aligned_cols=136  Identities=14%  Similarity=0.079  Sum_probs=102.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  155 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~  155 (243)
                      +.+|||+|||+|..+..++..  +.+|+|+|+|+.+++.++++..    .+++++++|+.+++..    ++||+|+++..
T Consensus        46 ~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~d~~~~~~~----~~fD~v~~~~~  115 (220)
T 3hnr_A           46 FGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLP----KEFSITEGDFLSFEVP----TSIDTIVSTYA  115 (220)
T ss_dssp             CSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSC----TTCCEESCCSSSCCCC----SCCSEEEEESC
T ss_pred             CCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCC----CceEEEeCChhhcCCC----CCeEEEEECcc
Confidence            789999999999999888875  6799999999999999887754    4689999999987542    68999999752


Q ss_pred             ----ccHHH--HHHHHccCcccCeEEEEEeCC-CcHH---------------------------HHHHHHHHHHHhCCee
Q 026122          156 ----AEMRI--LAEYCLPLVRVGGLFVAAKGH-DPQE---------------------------EVKNSERAVQLMGASL  201 (243)
Q Consensus       156 ----~~~~~--~l~~~~~~LkpgG~l~~~~~~-~~~~---------------------------~~~~~~~~l~~~g~~~  201 (243)
                          .+...  +++++.+.|||||.+++.... ....                           ...++.+.++++||++
T Consensus       116 l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v  195 (220)
T 3hnr_A          116 FHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFHV  195 (220)
T ss_dssp             GGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHHHTTEEE
T ss_pred             hhcCChHHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHHHCCCEE
Confidence                23444  999999999999999987522 1111                           1245677888999977


Q ss_pred             eEEEEEecCCCCCceEEEEEEeeCCCC
Q 026122          202 LQLCSVESQSPFGQRTAVVCLKSRRTP  228 (243)
Q Consensus       202 ~~~~~~~~~~~~~~r~~v~~~k~~~~~  228 (243)
                      +....       .....++..++...|
T Consensus       196 ~~~~~-------~~~~w~~~~~~~~~~  215 (220)
T 3hnr_A          196 TFTRL-------NHFVWVMEATKQLEH  215 (220)
T ss_dssp             EEEEC-------SSSEEEEEEEECSCC
T ss_pred             EEeec-------cceEEEEeehhhhhh
Confidence            65542       145555555554444

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.74  E-value=1.2e-17  Score=143.07  Aligned_cols=149  Identities=17%  Similarity=0.184  Sum_probs=103.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCC-------------------------------
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL-------------------------------  124 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-------------------------------  124 (243)
                      +.+|||||||+|..++.++..+++.+|+|||+|+.+++.|+++++..+.                               
T Consensus        47 ~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (292)
T 3g07_A           47 GRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSCF  126 (292)
T ss_dssp             TSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC------------------------------------
T ss_pred             CCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccccc
Confidence            7899999999999999999998889999999999999999998765432                               


Q ss_pred             ---------------------------CCEEEEEccccccccC--CcCCCCceEEEEcCcc----------cHHHHHHHH
Q 026122          125 ---------------------------LNVQIVRGRAETLGKD--VSFREQYDVAVARAVA----------EMRILAEYC  165 (243)
Q Consensus       125 ---------------------------~~v~~~~~d~~~~~~~--~~~~~~fD~I~~~~~~----------~~~~~l~~~  165 (243)
                                                 .+++++++|+.+....  ....++||+|++..+.          .+..+++.+
T Consensus       127 p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~~  206 (292)
T 3g07_A          127 PASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRRI  206 (292)
T ss_dssp             ---------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHHH
Confidence                                       3699999998764310  0013789999998743          678899999


Q ss_pred             ccCcccCeEEEEEeCCCc--------HHHH-----------HHHHHHHHH--hCCeeeEEEEEecCCCCC-ceEEEEEEe
Q 026122          166 LPLVRVGGLFVAAKGHDP--------QEEV-----------KNSERAVQL--MGASLLQLCSVESQSPFG-QRTAVVCLK  223 (243)
Q Consensus       166 ~~~LkpgG~l~~~~~~~~--------~~~~-----------~~~~~~l~~--~g~~~~~~~~~~~~~~~~-~r~~v~~~k  223 (243)
                      .++|+|||+|++....+.        .+++           .++.+.|..  .||..+++.........+ .|.+.+++|
T Consensus       207 ~~~LkpGG~lil~~~~~~~y~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~~~~GF~~~~~~~~~~~~~~g~~r~i~~~~k  286 (292)
T 3g07_A          207 YRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNYYRIQLKPEQFSSYLTSPDVGFSSYELVATPHNTSKGFQRPVYLFHK  286 (292)
T ss_dssp             HHHEEEEEEEEEECCCHHHHHTTTTSCHHHHHHHHHCCCCGGGHHHHHTSTTTCCCEEEEC-----------CCCEEEEC
T ss_pred             HHHhCCCcEEEEecCCchhhhhhhcccHHHHhhhhcEEEcHHHHHHHHHhcCCCceEEEEeccCCCCCCCccceEEEEEc
Confidence            999999999988643211        1111           134556667  899777654422111122 577777777


Q ss_pred             e
Q 026122          224 S  224 (243)
Q Consensus       224 ~  224 (243)
                      .
T Consensus       287 ~  287 (292)
T 3g07_A          287 A  287 (292)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.74  E-value=2.5e-17  Score=133.45  Aligned_cols=123  Identities=14%  Similarity=0.112  Sum_probs=101.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      ++.+|||+|||+|..++.++. .+..+|+|+|+|+.+++.++++++..++.+++++++|+.+..     .++||+|+++.
T Consensus        60 ~~~~vLDiG~G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-----~~~fD~i~~~~  133 (205)
T 3grz_A           60 KPLTVADVGTGSGILAIAAHK-LGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADV-----DGKFDLIVANI  133 (205)
T ss_dssp             SCCEEEEETCTTSHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTC-----CSCEEEEEEES
T ss_pred             CCCEEEEECCCCCHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccC-----CCCceEEEECC
Confidence            378999999999999988886 466799999999999999999999999877999999998753     27899999976


Q ss_pred             c-ccHHHHHHHHccCcccCeEEEEEe-CCCcHHHHHHHHHHHHHhCCeeeEEEE
Q 026122          155 V-AEMRILAEYCLPLVRVGGLFVAAK-GHDPQEEVKNSERAVQLMGASLLQLCS  206 (243)
Q Consensus       155 ~-~~~~~~l~~~~~~LkpgG~l~~~~-~~~~~~~~~~~~~~l~~~g~~~~~~~~  206 (243)
                      . ..+..+++.+.++|+|||++++.. ...   ...++.+.+++.||.+++...
T Consensus       134 ~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~---~~~~~~~~~~~~Gf~~~~~~~  184 (205)
T 3grz_A          134 LAEILLDLIPQLDSHLNEDGQVIFSGIDYL---QLPKIEQALAENSFQIDLKMR  184 (205)
T ss_dssp             CHHHHHHHGGGSGGGEEEEEEEEEEEEEGG---GHHHHHHHHHHTTEEEEEEEE
T ss_pred             cHHHHHHHHHHHHHhcCCCCEEEEEecCcc---cHHHHHHHHHHcCCceEEeec
Confidence            4 346888999999999999998864 322   345556777799998877654

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.74  E-value=1.5e-17  Score=139.37  Aligned_cols=128  Identities=13%  Similarity=0.114  Sum_probs=102.4

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      +++.+|||||||+|..+..++... +.+|+|+|+|+.+++.++++....  .+++++++|+.+++...   ++||+|+++
T Consensus        54 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~~~---~~fD~v~~~  127 (266)
T 3ujc_A           54 NENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGN--NKIIFEANDILTKEFPE---NNFDLIYSR  127 (266)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSC--TTEEEEECCTTTCCCCT---TCEEEEEEE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEECccccCCCCC---CcEEEEeHH
Confidence            447899999999999999999876 679999999999999998876544  57999999999876542   789999997


Q ss_pred             C----c--ccHHHHHHHHccCcccCeEEEEEeC--CC----c-------------HHHHHHHHHHHHHhCCeeeEEEEE
Q 026122          154 A----V--AEMRILAEYCLPLVRVGGLFVAAKG--HD----P-------------QEEVKNSERAVQLMGASLLQLCSV  207 (243)
Q Consensus       154 ~----~--~~~~~~l~~~~~~LkpgG~l~~~~~--~~----~-------------~~~~~~~~~~l~~~g~~~~~~~~~  207 (243)
                      .    +  .++..+++++.++|||||.+++...  ..    .             .....++.+.++++||..++...+
T Consensus       128 ~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~  206 (266)
T 3ujc_A          128 DAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRKYTLITVEEYADILTACNFKNVVSKDL  206 (266)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCHHHHHHHHHHTCCCCCHHHHHHHHHHTTCEEEEEEEC
T ss_pred             HHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchHHHHHHHhcCCCCCCCHHHHHHHHHHcCCeEEEEEeC
Confidence            5    3  5789999999999999999998752  11    0             012345677788999988877653

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.74  E-value=8.9e-17  Score=135.55  Aligned_cols=129  Identities=19%  Similarity=0.171  Sum_probs=105.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEEEc
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      ++.+|||||||+|..+..++... +++|+|+|+|+.+++.++++++..++. +++++.+|+.+++...   ++||+|++.
T Consensus        61 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~fD~v~~~  136 (273)
T 3bus_A           61 SGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFED---ASFDAVWAL  136 (273)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCT---TCEEEEEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCC---CCccEEEEe
Confidence            37899999999999999998876 689999999999999999999998875 5999999999876542   689999986


Q ss_pred             C----cccHHHHHHHHccCcccCeEEEEEeC----CCcHH------------------HHHHHHHHHHHhCCeeeEEEEE
Q 026122          154 A----VAEMRILAEYCLPLVRVGGLFVAAKG----HDPQE------------------EVKNSERAVQLMGASLLQLCSV  207 (243)
Q Consensus       154 ~----~~~~~~~l~~~~~~LkpgG~l~~~~~----~~~~~------------------~~~~~~~~l~~~g~~~~~~~~~  207 (243)
                      .    ..+...+++++.++|||||.+++...    .....                  ...++.+.++++||.+++...+
T Consensus       137 ~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~  216 (273)
T 3bus_A          137 ESLHHMPDRGRALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVDAFRAGGGVLSLGGIDEYESDVRQAELVVTSTVDI  216 (273)
T ss_dssp             SCTTTSSCHHHHHHHHHTTEEEEEEEEEEEEEESSCCCHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHTTCEEEEEEEC
T ss_pred             chhhhCCCHHHHHHHHHHHcCCCeEEEEEEeeccCCCChhHHHHHHHHHhhcCccCCCCHHHHHHHHHHcCCeEEEEEEC
Confidence            5    44789999999999999999987651    11110                  1245667788999998877653

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.74  E-value=4.6e-17  Score=132.32  Aligned_cols=139  Identities=16%  Similarity=0.156  Sum_probs=106.1

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      +++.+|||+|||+|..+..++..  +.+|+|+|+|+.+++.++++.      +++++++|+.+++.    .++||+|+++
T Consensus        42 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~------~~~~~~~d~~~~~~----~~~fD~v~~~  109 (211)
T 3e23_A           42 PAGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRL------GRPVRTMLFHQLDA----IDAYDAVWAH  109 (211)
T ss_dssp             CTTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHH------TSCCEECCGGGCCC----CSCEEEEEEC
T ss_pred             CCCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhc------CCceEEeeeccCCC----CCcEEEEEec
Confidence            34789999999999999888865  579999999999999998876      36788899988762    3789999997


Q ss_pred             Cc----c--cHHHHHHHHccCcccCeEEEEEeCCCcH------------HHHHHHHHHHHHhC-CeeeEEEEEecCCCCC
Q 026122          154 AV----A--EMRILAEYCLPLVRVGGLFVAAKGHDPQ------------EEVKNSERAVQLMG-ASLLQLCSVESQSPFG  214 (243)
Q Consensus       154 ~~----~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~------------~~~~~~~~~l~~~g-~~~~~~~~~~~~~~~~  214 (243)
                      ..    .  ++..+++++.++|||||.+++.......            -...++.+.++++| |+++++.........+
T Consensus       110 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~~~~~~~~~~~  189 (211)
T 3e23_A          110 ACLLHVPRDELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVAVESSEGKGFDQ  189 (211)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEEEEEEEEECTTS
T ss_pred             CchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEEEEEeccCCCCCC
Confidence            52    2  6789999999999999999987532111            13456677788999 9999887665433333


Q ss_pred             --ceEEEEEEee
Q 026122          215 --QRTAVVCLKS  224 (243)
Q Consensus       215 --~r~~v~~~k~  224 (243)
                        .+.++++.+.
T Consensus       190 ~~~~wl~~~~~~  201 (211)
T 3e23_A          190 ELAQFLHVSVRK  201 (211)
T ss_dssp             CEEEEEEEEEEC
T ss_pred             CCceEEEEEEec
Confidence              4455555544

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.74  E-value=1.5e-16  Score=131.63  Aligned_cols=96  Identities=11%  Similarity=0.115  Sum_probs=83.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~-  154 (243)
                      +.+|||+|||+|..+..++..  +.+|+|+|+|+.+++.++++....+. +++++++|+.+++..    ++||+|++.. 
T Consensus        38 ~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~----~~fD~v~~~~~  110 (246)
T 1y8c_A           38 FDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGL-KPRLACQDISNLNIN----RKFDLITCCLD  110 (246)
T ss_dssp             TTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTC-CCEEECCCGGGCCCS----CCEEEEEECTT
T ss_pred             CCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhhcCC-CeEEEecccccCCcc----CCceEEEEcCc
Confidence            789999999999999888866  57999999999999999999988776 699999999887542    6899999964 


Q ss_pred             ----c---ccHHHHHHHHccCcccCeEEEEE
Q 026122          155 ----V---AEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       155 ----~---~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                          .   .+...+++.+.++|+|||.+++.
T Consensus       111 ~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  141 (246)
T 1y8c_A          111 STNYIIDSDDLKKYFKAVSNHLKEGGVFIFD  141 (246)
T ss_dssp             GGGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             cccccCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence                2   35788999999999999999873

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.74  E-value=5.5e-17  Score=139.27  Aligned_cols=126  Identities=11%  Similarity=0.038  Sum_probs=103.2

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEEE
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      +++.+|||||||+|..+..++..++ ++|+|+|+|+.+++.++++.+..++. +++++++|+.++      +++||+|++
T Consensus        71 ~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~fD~v~~  143 (302)
T 3hem_A           71 EPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF------DEPVDRIVS  143 (302)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC------CCCCSEEEE
T ss_pred             CCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc------CCCccEEEE
Confidence            3478999999999999999998765 89999999999999999999999986 699999999886      178999999


Q ss_pred             cCc-------------ccHHHHHHHHccCcccCeEEEEEeCC-CcH-------------------------------HHH
Q 026122          153 RAV-------------AEMRILAEYCLPLVRVGGLFVAAKGH-DPQ-------------------------------EEV  187 (243)
Q Consensus       153 ~~~-------------~~~~~~l~~~~~~LkpgG~l~~~~~~-~~~-------------------------------~~~  187 (243)
                      ...             .++..+++++.++|||||.+++.... ...                               ...
T Consensus       144 ~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~s~  223 (302)
T 3hem_A          144 LGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGGRLPRI  223 (302)
T ss_dssp             ESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTCCCCCH
T ss_pred             cchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhccccccccccchHHHHHHhcCCCCCCCCH
Confidence            642             23479999999999999999986521 111                               113


Q ss_pred             HHHHHHHHHhCCeeeEEEE
Q 026122          188 KNSERAVQLMGASLLQLCS  206 (243)
Q Consensus       188 ~~~~~~l~~~g~~~~~~~~  206 (243)
                      .++.+.++++||.++....
T Consensus       224 ~~~~~~l~~aGf~~~~~~~  242 (302)
T 3hem_A          224 SQVDYYSSNAGWKVERYHR  242 (302)
T ss_dssp             HHHHHHHHHHTCEEEEEEE
T ss_pred             HHHHHHHHhCCcEEEEEEe
Confidence            4567778899998887765

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.74  E-value=4.7e-17  Score=139.48  Aligned_cols=141  Identities=14%  Similarity=0.158  Sum_probs=109.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCC---CCEEEEEccccccccCCcCCCCceEEEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL---LNVQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~~v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      +.+|||||||+|..+..++..  +.+|+|+|+|+.+++.++++....+.   .+++++++|+.+++.    +++||+|++
T Consensus        83 ~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~----~~~fD~v~~  156 (299)
T 3g2m_A           83 SGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL----DKRFGTVVI  156 (299)
T ss_dssp             CSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC----SCCEEEEEE
T ss_pred             CCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc----CCCcCEEEE
Confidence            459999999999999888865  57999999999999999999988764   469999999999765    278999986


Q ss_pred             cC----c---ccHHHHHHHHccCcccCeEEEEEeCCCcH-----------------------------------------
Q 026122          153 RA----V---AEMRILAEYCLPLVRVGGLFVAAKGHDPQ-----------------------------------------  184 (243)
Q Consensus       153 ~~----~---~~~~~~l~~~~~~LkpgG~l~~~~~~~~~-----------------------------------------  184 (243)
                      ..    .   .+...+++++.++|+|||.+++.......                                         
T Consensus       157 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  236 (299)
T 3g2m_A          157 SSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRHLPAEEIQEITIHPAD  236 (299)
T ss_dssp             CHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHHSCCCCC-------------CCEEEEEEEEEEEEEEEESC
T ss_pred             CCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCccccccchhccceeecCCCcEEEEEEEEeccccEEEEEEEecc
Confidence            42    1   13689999999999999999886521111                                         


Q ss_pred             ---------------HHHHHHHHHHHHhCCeeeEEEEEecCCCCCceEEEEEEe
Q 026122          185 ---------------EEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLK  223 (243)
Q Consensus       185 ---------------~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~v~~~k  223 (243)
                                     -...++.+.++++||+++++..+..+...... ++++..
T Consensus       237 ~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~g~~~~~-~~lvea  289 (299)
T 3g2m_A          237 ETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFASGGAGRKD-MVLVEA  289 (299)
T ss_dssp             C--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEEECTTSSSSCC-EEEEEE
T ss_pred             CCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEecCCCCCCccc-eeeeeh
Confidence                           03467788889999999999877654433233 344443

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.74  E-value=9.6e-17  Score=133.79  Aligned_cols=143  Identities=9%  Similarity=-0.021  Sum_probs=109.3

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccccccCCcCCCCceEEE
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      ++++.+|||||||+|.+++.+++..+..+|+|+|+++.+++.|++|++.+++.+ ++++.+|..+.....   ++||+|+
T Consensus        19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~---~~~D~Iv   95 (244)
T 3gnl_A           19 ITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKK---DAIDTIV   95 (244)
T ss_dssp             CCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGG---GCCCEEE
T ss_pred             CCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCcc---ccccEEE
Confidence            455889999999999999999988777899999999999999999999999975 999999998865421   3699987


Q ss_pred             EcC-cc-cHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEEEecCCCCCceEEEEEEee
Q 026122          152 ARA-VA-EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKS  224 (243)
Q Consensus       152 ~~~-~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~v~~~k~  224 (243)
                      +.+ .. .+..+++...+.|+++|+|++..- ...   ..+.+++.+.||.+.+..-+.  .......++.+.+.
T Consensus        96 iagmGg~lI~~IL~~~~~~L~~~~~lIlq~~-~~~---~~lr~~L~~~Gf~i~~E~lv~--e~~k~Yeii~~~~~  164 (244)
T 3gnl_A           96 IAGMGGTLIRTILEEGAAKLAGVTKLILQPN-IAA---WQLREWSEQNNWLITSEAILR--EDNKVYEIMVLAPS  164 (244)
T ss_dssp             EEEECHHHHHHHHHHTGGGGTTCCEEEEEES-SCH---HHHHHHHHHHTEEEEEEEEEE--ETTEEEEEEEEEEC
T ss_pred             EeCCchHHHHHHHHHHHHHhCCCCEEEEEcC-CCh---HHHHHHHHHCCCEEEEEEEEE--ECCEEEEEEEEEeC
Confidence            643 22 478899999999999999777543 333   445667779999987765433  12233445555544

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.74  E-value=7e-17  Score=133.94  Aligned_cols=132  Identities=17%  Similarity=0.118  Sum_probs=101.6

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEE
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      +++|.+|||+|||+|..+..+|... |.++|+|+|++++|++.+++++++.  .|+..+.+|..+........+++|+|+
T Consensus        75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~--~ni~~V~~d~~~p~~~~~~~~~vDvVf  152 (233)
T 4df3_A           75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR--RNIFPILGDARFPEKYRHLVEGVDGLY  152 (233)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC--TTEEEEESCTTCGGGGTTTCCCEEEEE
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh--cCeeEEEEeccCccccccccceEEEEE
Confidence            5679999999999999999999864 7789999999999999988877654  478899888876543322347899999


Q ss_pred             EcC--cccHHHHHHHHccCcccCeEEEEEeCCC-------cHHHHHHHHHHHHHhCCeeeEEEE
Q 026122          152 ARA--VAEMRILAEYCLPLVRVGGLFVAAKGHD-------PQEEVKNSERAVQLMGASLLQLCS  206 (243)
Q Consensus       152 ~~~--~~~~~~~l~~~~~~LkpgG~l~~~~~~~-------~~~~~~~~~~~l~~~g~~~~~~~~  206 (243)
                      +.-  ..+...++.++.+.|||||++++..-..       ....+.+..+.|+..||++.+...
T Consensus       153 ~d~~~~~~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~p~~~~~~~ev~~L~~~GF~l~e~i~  216 (233)
T 4df3_A          153 ADVAQPEQAAIVVRNARFFLRDGGYMLMAIKARSIDVTTEPSEVYKREIKTLMDGGLEIKDVVH  216 (233)
T ss_dssp             ECCCCTTHHHHHHHHHHHHEEEEEEEEEEEECCHHHHHTCCCHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             EeccCChhHHHHHHHHHHhccCCCEEEEEEecccCCCCCChHHHHHHHHHHHHHCCCEEEEEEc
Confidence            853  2356788999999999999998764211       123345556778899998877644

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.74  E-value=6.7e-17  Score=132.03  Aligned_cols=101  Identities=15%  Similarity=0.177  Sum_probs=86.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-----CEEEEEccccccccCCcCCCCceEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-----NVQIVRGRAETLGKDVSFREQYDVA  150 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-----~v~~~~~d~~~~~~~~~~~~~fD~I  150 (243)
                      +.+|||+|||+|..+..++...+..+|+|+|+|+.+++.++++++..++.     +++++++|+.......   ++||+|
T Consensus        30 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~---~~fD~v  106 (217)
T 3jwh_A           30 ARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRF---HGYDAA  106 (217)
T ss_dssp             CCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGG---CSCSEE
T ss_pred             CCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccC---CCcCEE
Confidence            78999999999999999998777789999999999999999998877765     6999999997655432   689999


Q ss_pred             EEcCc----c--cHHHHHHHHccCcccCeEEEEEe
Q 026122          151 VARAV----A--EMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       151 ~~~~~----~--~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      ++..+    .  +...+++.+.++|||||.+++..
T Consensus       107 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~  141 (217)
T 3jwh_A          107 TVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTP  141 (217)
T ss_dssp             EEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred             eeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence            99752    2  35799999999999999877654

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.73  E-value=2.3e-17  Score=146.63  Aligned_cols=129  Identities=18%  Similarity=0.199  Sum_probs=102.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHc-----C-C--CCEEEEEcccccc------cc
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLT-----Q-L--LNVQIVRGRAETL------GK  139 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~-----~-~--~~v~~~~~d~~~~------~~  139 (243)
                      ++.+|||||||+|..+..++... ++.+|+|+|+|+.+++.++++++.+     | .  .+++++++|+.++      +.
T Consensus        83 ~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~  162 (383)
T 4fsd_A           83 EGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGV  162 (383)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCC
T ss_pred             CCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCCC
Confidence            47899999999999999998875 6789999999999999999988765     3 2  4799999999986      33


Q ss_pred             CCcCCCCceEEEEcC----cccHHHHHHHHccCcccCeEEEEEeC---CCcH-----------------HHHHHHHHHHH
Q 026122          140 DVSFREQYDVAVARA----VAEMRILAEYCLPLVRVGGLFVAAKG---HDPQ-----------------EEVKNSERAVQ  195 (243)
Q Consensus       140 ~~~~~~~fD~I~~~~----~~~~~~~l~~~~~~LkpgG~l~~~~~---~~~~-----------------~~~~~~~~~l~  195 (243)
                      .   +++||+|+++.    ..++..+++++.++|||||++++...   ....                 ....++.+.++
T Consensus       163 ~---~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~  239 (383)
T 4fsd_A          163 P---DSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRLVA  239 (383)
T ss_dssp             C---TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHHHHH
T ss_pred             C---CCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHHHHHH
Confidence            2   36899999976    35789999999999999999998641   1100                 11256777888


Q ss_pred             HhCCeeeEEEE
Q 026122          196 LMGASLLQLCS  206 (243)
Q Consensus       196 ~~g~~~~~~~~  206 (243)
                      ++||..+++..
T Consensus       240 ~aGF~~v~~~~  250 (383)
T 4fsd_A          240 EAGFRDVRLVS  250 (383)
T ss_dssp             HTTCCCEEEEE
T ss_pred             HCCCceEEEEe
Confidence            99998765544

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.73  E-value=7.5e-17  Score=133.89  Aligned_cols=130  Identities=16%  Similarity=0.137  Sum_probs=102.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      ++.+|||||||+|..+..++... ..+|+|+|+|+.+++.++++....+..+++++++|+.+++...   ++||+|++..
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~---~~fD~v~~~~  154 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEP---DSYDVIWIQW  154 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCS---SCEEEEEEES
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCC---CCEEEEEEcc
Confidence            37899999999999988877654 5699999999999999999887765446999999998876542   6899999975


Q ss_pred             c----cc--HHHHHHHHccCcccCeEEEEEeCCC------------cHHHHHHHHHHHHHhCCeeeEEEEEe
Q 026122          155 V----AE--MRILAEYCLPLVRVGGLFVAAKGHD------------PQEEVKNSERAVQLMGASLLQLCSVE  208 (243)
Q Consensus       155 ~----~~--~~~~l~~~~~~LkpgG~l~~~~~~~------------~~~~~~~~~~~l~~~g~~~~~~~~~~  208 (243)
                      .    .+  +..+++.+.++|+|||.+++.....            ......++.+.++++||.+++.....
T Consensus       155 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~  226 (241)
T 2ex4_A          155 VIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEERQE  226 (241)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEECC
T ss_pred             hhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEEeeecC
Confidence            3    22  5689999999999999999854210            11134567778889999988876543

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.73  E-value=1.2e-16  Score=133.04  Aligned_cols=125  Identities=14%  Similarity=0.115  Sum_probs=99.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  155 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~  155 (243)
                      +.+|||||||+|..+..++... ..+|+++|+|+.+++.++++....  .+++++++|+.+++...   ++||+|++...
T Consensus        94 ~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~~~---~~fD~v~~~~~  167 (254)
T 1xtp_A           94 TSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGM--PVGKFILASMETATLPP---NTYDLIVIQWT  167 (254)
T ss_dssp             CSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTS--SEEEEEESCGGGCCCCS---SCEEEEEEESC
T ss_pred             CCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccC--CceEEEEccHHHCCCCC---CCeEEEEEcch
Confidence            7899999999999998888765 568999999999999999887654  46999999999876432   68999999752


Q ss_pred             ------ccHHHHHHHHccCcccCeEEEEEeCCCc-------------HHHHHHHHHHHHHhCCeeeEEEE
Q 026122          156 ------AEMRILAEYCLPLVRVGGLFVAAKGHDP-------------QEEVKNSERAVQLMGASLLQLCS  206 (243)
Q Consensus       156 ------~~~~~~l~~~~~~LkpgG~l~~~~~~~~-------------~~~~~~~~~~l~~~g~~~~~~~~  206 (243)
                            .++..+++.+.++|||||.+++......             .....++.+.++++||.+++...
T Consensus       168 l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~  237 (254)
T 1xtp_A          168 AIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAF  237 (254)
T ss_dssp             GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEEE
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEEEEeee
Confidence                  3578999999999999999998763110             11235567778899999887754

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.73  E-value=4.8e-16  Score=127.01  Aligned_cols=147  Identities=14%  Similarity=0.118  Sum_probs=106.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-----CEEEEEccccccccCCcCCCCceEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-----NVQIVRGRAETLGKDVSFREQYDVA  150 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-----~v~~~~~d~~~~~~~~~~~~~fD~I  150 (243)
                      +.+|||||||+|..+..++...+..+|+|+|+|+.+++.++++....++.     +++++++|+...+...   ++||+|
T Consensus        30 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~---~~fD~V  106 (219)
T 3jwg_A           30 AKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRF---SGYDAA  106 (219)
T ss_dssp             CCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGG---TTCSEE
T ss_pred             CCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCccccccccc---CCCCEE
Confidence            77999999999999999998777689999999999999999998877664     6999999997765432   689999


Q ss_pred             EEcCc----c--cHHHHHHHHccCcccCeEEEEEeCCC----------------------cHHHHHHHH-HHHHHhCCee
Q 026122          151 VARAV----A--EMRILAEYCLPLVRVGGLFVAAKGHD----------------------PQEEVKNSE-RAVQLMGASL  201 (243)
Q Consensus       151 ~~~~~----~--~~~~~l~~~~~~LkpgG~l~~~~~~~----------------------~~~~~~~~~-~~l~~~g~~~  201 (243)
                      ++..+    .  +...+++.+.+.|||||.++......                      ..+++.++. +.++++||.+
T Consensus       107 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Gf~v  186 (219)
T 3jwg_A          107 TVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGNLFEGNLRHRDHRFEWTRKEFQTWAVKVAEKYGYSV  186 (219)
T ss_dssp             EEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCCCT-----GGGCCTTSBCHHHHHHHHHHHHHHHTEEE
T ss_pred             EEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccchhhhhhhcccCcccccccCceeeecHHHHHHHHHHHHHHCCcEE
Confidence            98752    2  34789999999999999776554221                      233343332 5577899976


Q ss_pred             eEEEEEe-cCCCCCceEEEEEEeeC
Q 026122          202 LQLCSVE-SQSPFGQRTAVVCLKSR  225 (243)
Q Consensus       202 ~~~~~~~-~~~~~~~r~~v~~~k~~  225 (243)
                      .....-. .+.......+.++.|..
T Consensus       187 ~~~~~g~~~~~~g~~~qi~~~~~~~  211 (219)
T 3jwg_A          187 RFLQIGEIDDEFGSPTQMGVFTLGA  211 (219)
T ss_dssp             EEEEESCCCTTSCCSEEEEEEEECC
T ss_pred             EEEecCCccccCCCCeEEEEEeccC
Confidence            5432211 12222355666666653

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.73  E-value=2e-16  Score=124.85  Aligned_cols=120  Identities=18%  Similarity=0.132  Sum_probs=101.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  155 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~  155 (243)
                      +.+|||+|||+|..+..++.  ++.+|+|+|+|+.+++.++++.+.+++.+++++++|+.+ ....   ++||+|+++..
T Consensus        36 ~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~---~~~D~i~~~~~  109 (183)
T 2yxd_A           36 DDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED-VLDK---LEFNKAFIGGT  109 (183)
T ss_dssp             TCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH-HGGG---CCCSEEEECSC
T ss_pred             CCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc-cccC---CCCcEEEECCc
Confidence            78999999999999988886  678999999999999999999999998789999999988 3321   68999999877


Q ss_pred             ccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEE
Q 026122          156 AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLC  205 (243)
Q Consensus       156 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~  205 (243)
                      .+...+++.+.+.  |||.+++....  .....++.+.+++.|+.+..+.
T Consensus       110 ~~~~~~l~~~~~~--~gG~l~~~~~~--~~~~~~~~~~l~~~g~~~~~~~  155 (183)
T 2yxd_A          110 KNIEKIIEILDKK--KINHIVANTIV--LENAAKIINEFESRGYNVDAVN  155 (183)
T ss_dssp             SCHHHHHHHHHHT--TCCEEEEEESC--HHHHHHHHHHHHHTTCEEEEEE
T ss_pred             ccHHHHHHHHhhC--CCCEEEEEecc--cccHHHHHHHHHHcCCeEEEEE
Confidence            7889999999988  99999987632  3456677888889998766543

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.73  E-value=1.4e-16  Score=136.16  Aligned_cols=129  Identities=14%  Similarity=0.111  Sum_probs=104.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEEEc
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      ++.+|||||||+|..+..++... +++|+|+|+|+.+++.++++.+..++. +++++++|+.+++...   ++||+|++.
T Consensus        82 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~fD~v~~~  157 (297)
T 2o57_A           82 RQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCED---NSYDFIWSQ  157 (297)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCT---TCEEEEEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCC---CCEeEEEec
Confidence            37899999999999999998875 469999999999999999999888874 6999999999876542   789999996


Q ss_pred             C----cccHHHHHHHHccCcccCeEEEEEeCC----CcHH---------------HHHHHHHHHHHhCCeeeEEEEE
Q 026122          154 A----VAEMRILAEYCLPLVRVGGLFVAAKGH----DPQE---------------EVKNSERAVQLMGASLLQLCSV  207 (243)
Q Consensus       154 ~----~~~~~~~l~~~~~~LkpgG~l~~~~~~----~~~~---------------~~~~~~~~l~~~g~~~~~~~~~  207 (243)
                      .    +.+...+++++.++|||||.+++....    ....               ...++.+.++++||.+++...+
T Consensus       158 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~  234 (297)
T 2o57_A          158 DAFLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRTFSR  234 (297)
T ss_dssp             SCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHTTEEEEEEEEC
T ss_pred             chhhhcCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCchHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeEEEEEEC
Confidence            5    346899999999999999999987521    1100               2345567788999998877653

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.72  E-value=1e-16  Score=129.37  Aligned_cols=122  Identities=16%  Similarity=0.111  Sum_probs=98.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~-  154 (243)
                      +.+|||+|||+|..+..++..  +.+|+|+|+|+.+++.++++     ..+++++++|+.+++...   ++||+|++.. 
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~-----~~~~~~~~~d~~~~~~~~---~~fD~v~~~~~  111 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQT-----HPSVTFHHGTITDLSDSP---KRWAGLLAWYS  111 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHH-----CTTSEEECCCGGGGGGSC---CCEEEEEEESS
T ss_pred             CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHh-----CCCCeEEeCcccccccCC---CCeEEEEehhh
Confidence            679999999999999888876  56999999999999988876     346899999999876542   7899999965 


Q ss_pred             ---c--ccHHHHHHHHccCcccCeEEEEEeCCCc-------------HHHHHHHHHHHHHhCCeeeEEEEE
Q 026122          155 ---V--AEMRILAEYCLPLVRVGGLFVAAKGHDP-------------QEEVKNSERAVQLMGASLLQLCSV  207 (243)
Q Consensus       155 ---~--~~~~~~l~~~~~~LkpgG~l~~~~~~~~-------------~~~~~~~~~~l~~~g~~~~~~~~~  207 (243)
                         .  .+...+++.+.++|+|||.+++......             .....++.+.++++||.++++...
T Consensus       112 l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~  182 (203)
T 3h2b_A          112 LIHMGPGELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSSHWD  182 (203)
T ss_dssp             STTCCTTTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEEEEC
T ss_pred             HhcCCHHHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEEEec
Confidence               2  2789999999999999999998762211             112456677788999999887653

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.72  E-value=6.8e-18  Score=137.22  Aligned_cols=128  Identities=9%  Similarity=-0.106  Sum_probs=93.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc------------CCCCEEEEEccccccccCCcC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT------------QLLNVQIVRGRAETLGKDVSF  143 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~------------~~~~v~~~~~d~~~~~~~~~~  143 (243)
                      +.+|||+|||+|..+..++..  +.+|+|||+|+.|++.|++..+..            ...+++++++|+.+++...  
T Consensus        23 ~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~--   98 (203)
T 1pjz_A           23 GARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARD--   98 (203)
T ss_dssp             TCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHH--
T ss_pred             CCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCccc--
Confidence            789999999999999999976  579999999999999998875421            1346999999999886421  


Q ss_pred             CCCceEEEEcCc------ccHHHHHHHHccCcccCeEEEEEe-CCC--------cHHHHHHHHHHHHHhCCeeeEEEEEe
Q 026122          144 REQYDVAVARAV------AEMRILAEYCLPLVRVGGLFVAAK-GHD--------PQEEVKNSERAVQLMGASLLQLCSVE  208 (243)
Q Consensus       144 ~~~fD~I~~~~~------~~~~~~l~~~~~~LkpgG~l~~~~-~~~--------~~~~~~~~~~~l~~~g~~~~~~~~~~  208 (243)
                      .++||+|+++..      .+...+++++.++|||||++++.. ...        ..-...++.+.+.. ||++..++...
T Consensus        99 ~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~-gf~i~~~~~~~  177 (203)
T 1pjz_A           99 IGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVMSG-NWEVTKVGGQD  177 (203)
T ss_dssp             HHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTSCS-SEEEEEEEESS
T ss_pred             CCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCccccCCCCCCCCHHHHHHHhcC-CcEEEEecccc
Confidence            157999998642      235678999999999999844332 211        00123445555556 88877766544

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.72  E-value=5.5e-16  Score=129.77  Aligned_cols=105  Identities=17%  Similarity=0.229  Sum_probs=89.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEEE
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      ++.+|||||||+|..++.++...| +++|+++|+|+.+++.++++++..++. +++++++|+.+........++||+|++
T Consensus        63 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~  142 (248)
T 3tfw_A           63 QAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIFI  142 (248)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEEE
T ss_pred             CCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEEE
Confidence            378999999999999999998877 789999999999999999999999986 699999999874322111248999998


Q ss_pred             cC-cccHHHHHHHHccCcccCeEEEEEe
Q 026122          153 RA-VAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       153 ~~-~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      .+ ......+++.+.++|||||.+++..
T Consensus       143 d~~~~~~~~~l~~~~~~LkpGG~lv~~~  170 (248)
T 3tfw_A          143 DADKPNNPHYLRWALRYSRPGTLIIGDN  170 (248)
T ss_dssp             CSCGGGHHHHHHHHHHTCCTTCEEEEEC
T ss_pred             CCchHHHHHHHHHHHHhcCCCeEEEEeC
Confidence            76 4467889999999999999988754

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.72  E-value=8.1e-17  Score=137.20  Aligned_cols=102  Identities=24%  Similarity=0.353  Sum_probs=89.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      ++.+|||||||+|..+..++..+| +.+|+|+|+|+.+++.++++....+. +++++++|+.+++.    +++||+|+++
T Consensus        22 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~----~~~fD~v~~~   96 (284)
T 3gu3_A           22 KPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY-DSEFLEGDATEIEL----NDKYDIAICH   96 (284)
T ss_dssp             SCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS-EEEEEESCTTTCCC----SSCEEEEEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC-ceEEEEcchhhcCc----CCCeeEEEEC
Confidence            478999999999999999998877 48999999999999999999887766 79999999998764    2689999997


Q ss_pred             C----cccHHHHHHHHccCcccCeEEEEEeCC
Q 026122          154 A----VAEMRILAEYCLPLVRVGGLFVAAKGH  181 (243)
Q Consensus       154 ~----~~~~~~~l~~~~~~LkpgG~l~~~~~~  181 (243)
                      .    ..+...+++.+.+.|||||++++....
T Consensus        97 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  128 (284)
T 3gu3_A           97 AFLLHMTTPETMLQKMIHSVKKGGKIICFEPH  128 (284)
T ss_dssp             SCGGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             ChhhcCCCHHHHHHHHHHHcCCCCEEEEEecc
Confidence            5    357899999999999999999977643

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.72  E-value=6.2e-17  Score=135.14  Aligned_cols=125  Identities=14%  Similarity=0.141  Sum_probs=100.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~-  154 (243)
                      +.+|||+|||+|..+..++...+ .+|+|+|+|+.+++.++++..   ..+++++++|+.+++...   ++||+|++.. 
T Consensus        45 ~~~vLD~GcG~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~~~---~~fD~v~~~~~  117 (253)
T 3g5l_A           45 QKTVLDLGCGFGWHCIYAAEHGA-KKVLGIDLSERMLTEAKRKTT---SPVVCYEQKAIEDIAIEP---DAYNVVLSSLA  117 (253)
T ss_dssp             TCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHCC---CTTEEEEECCGGGCCCCT---TCEEEEEEESC
T ss_pred             CCEEEEECCCCCHHHHHHHHcCC-CEEEEEECCHHHHHHHHHhhc---cCCeEEEEcchhhCCCCC---CCeEEEEEchh
Confidence            78999999999999988887643 399999999999999887755   346999999999876532   7899999975 


Q ss_pred             ---cccHHHHHHHHccCcccCeEEEEEeCCCc-------------------------------------------HHHHH
Q 026122          155 ---VAEMRILAEYCLPLVRVGGLFVAAKGHDP-------------------------------------------QEEVK  188 (243)
Q Consensus       155 ---~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-------------------------------------------~~~~~  188 (243)
                         ..++..+++++.++|||||.+++......                                           .....
T Consensus       118 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~  197 (253)
T 3g5l_A          118 LHYIASFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGEDVQKYHRTVT  197 (253)
T ss_dssp             GGGCSCHHHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEETTEEEEEECCCHH
T ss_pred             hhhhhhHHHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEEeccccccceEEEeeccccCccEecCHH
Confidence               34789999999999999999998631100                                           00456


Q ss_pred             HHHHHHHHhCCeeeEEEEE
Q 026122          189 NSERAVQLMGASLLQLCSV  207 (243)
Q Consensus       189 ~~~~~l~~~g~~~~~~~~~  207 (243)
                      ++.+.++++||.++++...
T Consensus       198 ~~~~~l~~aGF~~~~~~e~  216 (253)
T 3g5l_A          198 TYIQTLLKNGFQINSVIEP  216 (253)
T ss_dssp             HHHHHHHHTTEEEEEEECC
T ss_pred             HHHHHHHHcCCeeeeeecC
Confidence            7788888999999887653

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.72  E-value=1e-16  Score=132.68  Aligned_cols=129  Identities=15%  Similarity=0.109  Sum_probs=101.8

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      +++.+|||||||+|..+..++..  +.+|+|+|+|+.+++.++++.   ...+++++++|+.+++...   ++||+|++.
T Consensus        52 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~---~~~~~~~~~~d~~~~~~~~---~~fD~v~~~  123 (242)
T 3l8d_A           52 KKEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERG---EGPDLSFIKGDLSSLPFEN---EQFEAIMAI  123 (242)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTT---CBTTEEEEECBTTBCSSCT---TCEEEEEEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhc---ccCCceEEEcchhcCCCCC---CCccEEEEc
Confidence            34789999999999999888876  579999999999999887763   2346999999999876532   789999996


Q ss_pred             C----cccHHHHHHHHccCcccCeEEEEEeC-CCcH------------------HHHHHHHHHHHHhCCeeeEEEEEecC
Q 026122          154 A----VAEMRILAEYCLPLVRVGGLFVAAKG-HDPQ------------------EEVKNSERAVQLMGASLLQLCSVESQ  210 (243)
Q Consensus       154 ~----~~~~~~~l~~~~~~LkpgG~l~~~~~-~~~~------------------~~~~~~~~~l~~~g~~~~~~~~~~~~  210 (243)
                      .    ..+...+++.+.++|+|||.+++... ....                  -...++.+.++++||++++...+...
T Consensus       124 ~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~  203 (242)
T 3l8d_A          124 NSLEWTEEPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDGIGVYKR  203 (242)
T ss_dssp             SCTTSSSCHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEEEEEEEECT
T ss_pred             ChHhhccCHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEEEEeeccccc
Confidence            5    45788999999999999999998762 1110                  11235677788999999988766543

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.72  E-value=1.8e-16  Score=126.23  Aligned_cols=123  Identities=15%  Similarity=0.075  Sum_probs=98.6

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      +++.+|||+|||+|..+..++..  +.+|+++|+|+.+++.++++.     .+++++++|+.+.+..   .++||+|+++
T Consensus        45 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~-----~~~~~~~~d~~~~~~~---~~~~D~i~~~  114 (195)
T 3cgg_A           45 PRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDF-----PEARWVVGDLSVDQIS---ETDFDLIVSA  114 (195)
T ss_dssp             CTTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHC-----TTSEEEECCTTTSCCC---CCCEEEEEEC
T ss_pred             cCCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhC-----CCCcEEEcccccCCCC---CCceeEEEEC
Confidence            34789999999999999888866  579999999999999988764     3588999999886543   2689999997


Q ss_pred             -Cc------ccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEE
Q 026122          154 -AV------AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCS  206 (243)
Q Consensus       154 -~~------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~  206 (243)
                       ..      .+...+++.+.+.|+|||.+++...........++.+.++..||.+.+...
T Consensus       115 ~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  174 (195)
T 3cgg_A          115 GNVMGFLAEDGREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVGLELENAFE  174 (195)
T ss_dssp             CCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHHHHTEEEEEEES
T ss_pred             CcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHHHcCCEEeeeec
Confidence             32      245889999999999999999877544333456667778899998877654

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.71  E-value=3.9e-16  Score=129.54  Aligned_cols=147  Identities=14%  Similarity=0.010  Sum_probs=99.6

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEE
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      ++++.+|||+|||+|..+..+|... +.++|+|+|+|+.+++.+.+.+++.  .|+.++++|+..........++||+|+
T Consensus        74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r--~nv~~i~~Da~~~~~~~~~~~~~D~I~  151 (232)
T 3id6_C           74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR--PNIFPLLADARFPQSYKSVVENVDVLY  151 (232)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC--TTEEEEECCTTCGGGTTTTCCCEEEEE
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CCeEEEEcccccchhhhccccceEEEE
Confidence            4568999999999999998888763 5789999999999886555555443  579999999986532211236899999


Q ss_pred             EcCc-ccHHH-HHHHHccCcccCeEEEEEeCC-------CcHHHHHHHHHHHHHhCCeeeEEEEEecCCCCCceEEEEEE
Q 026122          152 ARAV-AEMRI-LAEYCLPLVRVGGLFVAAKGH-------DPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCL  222 (243)
Q Consensus       152 ~~~~-~~~~~-~l~~~~~~LkpgG~l~~~~~~-------~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~v~~~  222 (243)
                      ++.. .+... +.+.+.+.|||||++++..-.       ...+...+..+.++..||++.+...  +.....++.+|+.+
T Consensus       152 ~d~a~~~~~~il~~~~~~~LkpGG~lvisik~~~~d~t~~~~e~~~~~~~~L~~~gf~~~~~~~--l~p~~~~h~~v~~~  229 (232)
T 3id6_C          152 VDIAQPDQTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKLENSNFETIQIIN--LDPYDKDHAIVLSK  229 (232)
T ss_dssp             ECCCCTTHHHHHHHHHHHHEEEEEEEEEEEC-------CCSSSSTTHHHHHHHHTTEEEEEEEE--CTTTCSSCEEEEEE
T ss_pred             ecCCChhHHHHHHHHHHHhCCCCeEEEEEEccCCcccCCCHHHHHHHHHHHHHHCCCEEEEEec--cCCCcCceEEEEEE
Confidence            9863 34444 445566699999999986411       1111223445566788998876543  33333455555555


Q ss_pred             e
Q 026122          223 K  223 (243)
Q Consensus       223 k  223 (243)
                      +
T Consensus       230 ~  230 (232)
T 3id6_C          230 Y  230 (232)
T ss_dssp             E
T ss_pred             e
Confidence            4

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.71  E-value=8.2e-17  Score=133.16  Aligned_cols=124  Identities=14%  Similarity=0.079  Sum_probs=99.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~-  154 (243)
                      +.+|||||||+|..+..++...  .+|+|+|+|+.+++.++++...    +++++++|+.++..    +++||+|++.. 
T Consensus        43 ~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~~~----~v~~~~~d~~~~~~----~~~fD~v~~~~~  112 (250)
T 2p7i_A           43 PGNLLELGSFKGDFTSRLQEHF--NDITCVEASEEAISHAQGRLKD----GITYIHSRFEDAQL----PRRYDNIVLTHV  112 (250)
T ss_dssp             SSCEEEESCTTSHHHHHHTTTC--SCEEEEESCHHHHHHHHHHSCS----CEEEEESCGGGCCC----SSCEEEEEEESC
T ss_pred             CCcEEEECCCCCHHHHHHHHhC--CcEEEEeCCHHHHHHHHHhhhC----CeEEEEccHHHcCc----CCcccEEEEhhH
Confidence            6799999999999998888653  4899999999999998877543    69999999998732    27899999975 


Q ss_pred             ---cccHHHHHHHHc-cCcccCeEEEEEeCCCc-H-----------------------------HHHHHHHHHHHHhCCe
Q 026122          155 ---VAEMRILAEYCL-PLVRVGGLFVAAKGHDP-Q-----------------------------EEVKNSERAVQLMGAS  200 (243)
Q Consensus       155 ---~~~~~~~l~~~~-~~LkpgG~l~~~~~~~~-~-----------------------------~~~~~~~~~l~~~g~~  200 (243)
                         +.+...+++++. ++|||||.+++...... .                             -...++.+.++++||+
T Consensus       113 l~~~~~~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~  192 (250)
T 2p7i_A          113 LEHIDDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQ  192 (250)
T ss_dssp             GGGCSSHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCE
T ss_pred             HHhhcCHHHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcCccccchhcccccccccccccCCHHHHHHHHHHCCCe
Confidence               347899999999 99999999998762211 0                             0234667788899999


Q ss_pred             eeEEEEEec
Q 026122          201 LLQLCSVES  209 (243)
Q Consensus       201 ~~~~~~~~~  209 (243)
                      +++...+.+
T Consensus       193 ~~~~~~~~~  201 (250)
T 2p7i_A          193 VTYRSGIFF  201 (250)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEeeeEe
Confidence            988876553

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.71  E-value=1.2e-16  Score=128.86  Aligned_cols=132  Identities=12%  Similarity=0.139  Sum_probs=102.5

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      +++ +|||+|||+|..+..++..  +.+|+|+|+|+.+++.++++.+..+. +++++++|+.+.+..   .++||+|++.
T Consensus        29 ~~~-~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~---~~~fD~v~~~  101 (202)
T 2kw5_A           29 PQG-KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGV-KITTVQSNLADFDIV---ADAWEGIVSI  101 (202)
T ss_dssp             CSS-EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHTC-CEEEECCBTTTBSCC---TTTCSEEEEE
T ss_pred             CCC-CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCC-ceEEEEcChhhcCCC---cCCccEEEEE
Confidence            336 9999999999999888865  57999999999999999999988776 699999999887643   2689999985


Q ss_pred             C----cccHHHHHHHHccCcccCeEEEEEeCC-Cc-------------HHHHHHHHHHHHHhCCeeeEEEEEecCCCCC
Q 026122          154 A----VAEMRILAEYCLPLVRVGGLFVAAKGH-DP-------------QEEVKNSERAVQLMGASLLQLCSVESQSPFG  214 (243)
Q Consensus       154 ~----~~~~~~~l~~~~~~LkpgG~l~~~~~~-~~-------------~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  214 (243)
                      .    ..+...+++.+.++|+|||.+++.... ..             .-...++.+.++  ||+++.......+...+
T Consensus       102 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--Gf~v~~~~~~~~~~~~g  178 (202)
T 2kw5_A          102 FCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSELP--SLNWLIANNLERNLDEG  178 (202)
T ss_dssp             CCCCCHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCSSSGGGCCCHHHHHHHCS--SSCEEEEEEEEEECSCS
T ss_pred             hhcCCHHHHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCCCCcceeecCHHHHHHHhc--CceEEEEEEEEeecCCC
Confidence            3    235788999999999999999987521 10             112344555555  99999888776554333

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.71  E-value=1.2e-16  Score=133.76  Aligned_cols=126  Identities=17%  Similarity=0.131  Sum_probs=104.4

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccccccCCcCCCCceEEE
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIA-CPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      .++.+|||+|||+|..+..++.. .|+.+|+++|+|+.+++.|+++++..++.+ ++++++|+.+...    .++||+|+
T Consensus        92 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~D~v~  167 (255)
T 3mb5_A           92 SPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIE----EENVDHVI  167 (255)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCC----CCSEEEEE
T ss_pred             CCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccC----CCCcCEEE
Confidence            44889999999999999999988 678999999999999999999999999876 9999999987532    26799999


Q ss_pred             EcCcccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhC--CeeeEEEE
Q 026122          152 ARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMG--ASLLQLCS  206 (243)
Q Consensus       152 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g--~~~~~~~~  206 (243)
                      ++. .+...+++.+.+.|+|||.+++....  .....++.+.+++.|  |...+..+
T Consensus       168 ~~~-~~~~~~l~~~~~~L~~gG~l~~~~~~--~~~~~~~~~~l~~~g~~f~~~~~~e  221 (255)
T 3mb5_A          168 LDL-PQPERVVEHAAKALKPGGFFVAYTPC--SNQVMRLHEKLREFKDYFMKPRTIN  221 (255)
T ss_dssp             ECS-SCGGGGHHHHHHHEEEEEEEEEEESS--HHHHHHHHHHHHHTGGGBSCCEEEC
T ss_pred             ECC-CCHHHHHHHHHHHcCCCCEEEEEECC--HHHHHHHHHHHHHcCCCccccEEEE
Confidence            964 45567889999999999999987643  344566677788999  87665543

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.71  E-value=1.3e-16  Score=135.51  Aligned_cols=127  Identities=13%  Similarity=0.149  Sum_probs=105.2

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHc-CCCCEEEEEccccccccCCcCCCCceEE
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIA-CPDWKVTLLESMNKRCVFLEHAVSLT-QLLNVQIVRGRAETLGKDVSFREQYDVA  150 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~-~~~~~v~~vD~s~~~~~~a~~~~~~~-~~~~v~~~~~d~~~~~~~~~~~~~fD~I  150 (243)
                      +.++.+|||+|||+|..+..++.. .|+.+|+++|+++.+++.++++++.+ +..+++++++|+.+.. .   .++||+|
T Consensus       108 ~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~-~---~~~fD~V  183 (275)
T 1yb2_A          108 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFI-S---DQMYDAV  183 (275)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCC-C---SCCEEEE
T ss_pred             CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccC-c---CCCccEE
Confidence            345789999999999999999987 67889999999999999999999988 8778999999998732 2   2679999


Q ss_pred             EEcCcccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEE
Q 026122          151 VARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCS  206 (243)
Q Consensus       151 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~  206 (243)
                      +++ ..+...+++.+.+.|+|||++++.....  ....++.+.++..||...+...
T Consensus       184 i~~-~~~~~~~l~~~~~~LkpgG~l~i~~~~~--~~~~~~~~~l~~~Gf~~~~~~~  236 (275)
T 1yb2_A          184 IAD-IPDPWNHVQKIASMMKPGSVATFYLPNF--DQSEKTVLSLSASGMHHLETVE  236 (275)
T ss_dssp             EEC-CSCGGGSHHHHHHTEEEEEEEEEEESSH--HHHHHHHHHSGGGTEEEEEEEE
T ss_pred             EEc-CcCHHHHHHHHHHHcCCCCEEEEEeCCH--HHHHHHHHHHHHCCCeEEEEEE
Confidence            994 4456788999999999999999877543  3445666777889998777655

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.71  E-value=9.8e-17  Score=136.28  Aligned_cols=125  Identities=17%  Similarity=0.131  Sum_probs=101.3

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEE
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      +.++.+|||+|||+|.+++.+|...++++|+|+|+|+.+++.++++++.+++.+++++++|+.+. ..   .++||+|++
T Consensus       117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~-~~---~~~~D~Vi~  192 (272)
T 3a27_A          117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDV-EL---KDVADRVIM  192 (272)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGC-CC---TTCEEEEEE
T ss_pred             cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHc-Cc---cCCceEEEE
Confidence            45688999999999999999998877789999999999999999999999998899999999987 32   268999999


Q ss_pred             cCcccHHHHHHHHccCcccCeEEEEEeCCCcH---HHHHHHHHHHHH-hCCee
Q 026122          153 RAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQ---EEVKNSERAVQL-MGASL  201 (243)
Q Consensus       153 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~---~~~~~~~~~l~~-~g~~~  201 (243)
                      +.......+++.+.+.|+|||.+++.......   +...+..+.+.. .|..+
T Consensus       193 d~p~~~~~~l~~~~~~LkpgG~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (272)
T 3a27_A          193 GYVHKTHKFLDKTFEFLKDRGVIHYHETVAEKIMYERPIERLKFYAEKNGYKL  245 (272)
T ss_dssp             CCCSSGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTHHHHHHHHHHHHTTEEE
T ss_pred             CCcccHHHHHHHHHHHcCCCCEEEEEEcCccccccccHHHHHHHHHHHhCCee
Confidence            87667788999999999999999876643211   234444444444 34443

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.71  E-value=2.2e-17  Score=133.79  Aligned_cols=126  Identities=17%  Similarity=0.191  Sum_probs=80.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccC-CcCCCCceEEEEcC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD-VSFREQYDVAVARA  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~~~fD~I~~~~  154 (243)
                      +.+|||+|||+|..++.++...++.+|+|+|+|+.+++.++++++.++. +++++++|+.+.... ....++||+|+++.
T Consensus        31 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~fD~i~~np  109 (215)
T 4dzr_A           31 GTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA-VVDWAAADGIEWLIERAERGRPWHAIVSNP  109 (215)
T ss_dssp             TEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC--------------------CCHHHHHHHHHHHHHTTCCBSEEEECC
T ss_pred             CCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC-ceEEEEcchHhhhhhhhhccCcccEEEECC
Confidence            7899999999999999999998888999999999999999999988887 799999999873211 00126899999952


Q ss_pred             c----c--------------------------cHHHHHHHHccCcccCeE-EEEEeCCCcHHHHHHHHHHHH--HhCCee
Q 026122          155 V----A--------------------------EMRILAEYCLPLVRVGGL-FVAAKGHDPQEEVKNSERAVQ--LMGASL  201 (243)
Q Consensus       155 ~----~--------------------------~~~~~l~~~~~~LkpgG~-l~~~~~~~~~~~~~~~~~~l~--~~g~~~  201 (243)
                      .    .                          .+..+++.+.++|||||+ +++..+....+++   .+.++  ..||..
T Consensus       110 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~---~~~l~~~~~gf~~  186 (215)
T 4dzr_A          110 PYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGHNQADEV---ARLFAPWRERGFR  186 (215)
T ss_dssp             CCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTTSCHHHH---HHHTGGGGGGTEE
T ss_pred             CCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECCccHHHH---HHHHHHhhcCCce
Confidence            0    0                          127888999999999999 6665565554444   55566  778866


Q ss_pred             eEEE
Q 026122          202 LQLC  205 (243)
Q Consensus       202 ~~~~  205 (243)
                      .++.
T Consensus       187 ~~~~  190 (215)
T 4dzr_A          187 VRKV  190 (215)
T ss_dssp             CCEE
T ss_pred             EEEE
Confidence            5543

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.71  E-value=1.1e-16  Score=137.82  Aligned_cols=129  Identities=16%  Similarity=0.129  Sum_probs=103.3

Q ss_pred             CCCCeEEEEcCCCChHHHHHH-HHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccccccCCcCCCCceEEE
Q 026122           74 NSNLKLVDVGTGAGLPGLVLA-IACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la-~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      +++.+|||||||+|..++.++ ...++.+|+|+|+|+.+++.++++....++.+ ++++++|+.+++..    ++||+|+
T Consensus       117 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~----~~fD~v~  192 (305)
T 3ocj_A          117 RPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTR----EGYDLLT  192 (305)
T ss_dssp             CTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCC----SCEEEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCcc----CCeEEEE
Confidence            458899999999999988875 45678899999999999999999999888865 99999999997642    7899999


Q ss_pred             EcCc----ccHH---HHHHHHccCcccCeEEEEEeCCC-------c--------H---------------------HHHH
Q 026122          152 ARAV----AEMR---ILAEYCLPLVRVGGLFVAAKGHD-------P--------Q---------------------EEVK  188 (243)
Q Consensus       152 ~~~~----~~~~---~~l~~~~~~LkpgG~l~~~~~~~-------~--------~---------------------~~~~  188 (243)
                      ++..    .+..   .+++++.+.|||||.+++..-..       .        .                     ....
T Consensus       193 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (305)
T 3ocj_A          193 SNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHA  272 (305)
T ss_dssp             CCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHH
T ss_pred             ECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHH
Confidence            9752    2333   47999999999999999865110       0        0                     1245


Q ss_pred             HHHHHHHHhCCeeeEEEE
Q 026122          189 NSERAVQLMGASLLQLCS  206 (243)
Q Consensus       189 ~~~~~l~~~g~~~~~~~~  206 (243)
                      ++.+.++++||..+++..
T Consensus       273 ~~~~~l~~aGF~~v~~~~  290 (305)
T 3ocj_A          273 QTRAQLEEAGFTDLRFED  290 (305)
T ss_dssp             HHHHHHHHTTCEEEEEEC
T ss_pred             HHHHHHHHCCCEEEEEEc
Confidence            677888899998887654

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.71  E-value=5.8e-17  Score=134.00  Aligned_cols=129  Identities=13%  Similarity=0.076  Sum_probs=102.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      +.+|||+|||+|..+..++.  ++.+|+|+|+|+.+++.++++....+. .+++++++|+.++...    ++||+|+++.
T Consensus        67 ~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~----~~fD~v~~~~  140 (235)
T 3lcc_A           67 LGRALVPGCGGGHDVVAMAS--PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPT----ELFDLIFDYV  140 (235)
T ss_dssp             CEEEEEETCTTCHHHHHHCB--TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCS----SCEEEEEEES
T ss_pred             CCCEEEeCCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCC----CCeeEEEECh
Confidence            45999999999999887764  578999999999999999998876543 4699999999987642    6899999865


Q ss_pred             ----cc--cHHHHHHHHccCcccCeEEEEEeCCC--------cHHHHHHHHHHHHHhCCeeeEEEEEecC
Q 026122          155 ----VA--EMRILAEYCLPLVRVGGLFVAAKGHD--------PQEEVKNSERAVQLMGASLLQLCSVESQ  210 (243)
Q Consensus       155 ----~~--~~~~~l~~~~~~LkpgG~l~~~~~~~--------~~~~~~~~~~~l~~~g~~~~~~~~~~~~  210 (243)
                          +.  +...+++.+.++|+|||.+++..-..        ......++.+.++.+||.++.++.....
T Consensus       141 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~  210 (235)
T 3lcc_A          141 FFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAVSVEENPHA  210 (235)
T ss_dssp             STTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEEEEEECTTC
T ss_pred             hhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCeEEEEEecCCc
Confidence                23  68899999999999999998765211        1112356677788999999888775543

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.71  E-value=3.4e-16  Score=124.34  Aligned_cols=121  Identities=21%  Similarity=0.166  Sum_probs=100.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      +.+|||+|||+|..+..++...  .+|+++|+|+.+++.++++.+.+++ .+++++++|+.+....   .++||+|++..
T Consensus        34 ~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~D~v~~~~  108 (192)
T 1l3i_A           34 NDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCK---IPDIDIAVVGG  108 (192)
T ss_dssp             TCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTT---SCCEEEEEESC
T ss_pred             CCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhccc---CCCCCEEEECC
Confidence            7899999999999998888764  7999999999999999999999988 6799999998872211   14799999976


Q ss_pred             c-ccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeE
Q 026122          155 V-AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQ  203 (243)
Q Consensus       155 ~-~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~  203 (243)
                      . ..+..+++.+.++|+|||.+++....  .....++.+.+++.||.+..
T Consensus       109 ~~~~~~~~l~~~~~~l~~gG~l~~~~~~--~~~~~~~~~~l~~~g~~~~~  156 (192)
T 1l3i_A          109 SGGELQEILRIIKDKLKPGGRIIVTAIL--LETKFEAMECLRDLGFDVNI  156 (192)
T ss_dssp             CTTCHHHHHHHHHHTEEEEEEEEEEECB--HHHHHHHHHHHHHTTCCCEE
T ss_pred             chHHHHHHHHHHHHhcCCCcEEEEEecC--cchHHHHHHHHHHCCCceEE
Confidence            4 67899999999999999999886643  34556677788899985443

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.71  E-value=5.5e-16  Score=126.85  Aligned_cols=98  Identities=15%  Similarity=0.148  Sum_probs=84.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  155 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~  155 (243)
                      +.+|||+|||+|..+..++...+  +|+|+|+|+.+++.++++.+..+ .+++++++|+.+++..   .++||+|+++..
T Consensus        39 ~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~~---~~~~D~v~~~~~  112 (227)
T 1ve3_A           39 RGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRE-SNVEFIVGDARKLSFE---DKTFDYVIFIDS  112 (227)
T ss_dssp             CCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCTTSCCSC---TTCEEEEEEESC
T ss_pred             CCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcC-CCceEEECchhcCCCC---CCcEEEEEEcCc
Confidence            67999999999999988887644  99999999999999999998877 5799999999887543   268999999754


Q ss_pred             ------ccHHHHHHHHccCcccCeEEEEEe
Q 026122          156 ------AEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       156 ------~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                            .+...+++.+.++|+|||.+++..
T Consensus       113 ~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  142 (227)
T 1ve3_A          113 IVHFEPLELNQVFKEVRRVLKPSGKFIMYF  142 (227)
T ss_dssp             GGGCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hHhCCHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence                  256789999999999999998765

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.70  E-value=3e-16  Score=129.78  Aligned_cols=147  Identities=18%  Similarity=0.119  Sum_probs=103.9

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEE
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      ++++.+|||+|||+|..+..++... ++.+|+|+|+|+.+++.+.++++.+  .+++++++|+.+....+...++||+|+
T Consensus        75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~--~~v~~~~~d~~~~~~~~~~~~~~D~V~  152 (233)
T 2ipx_A           75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR--TNIIPVIEDARHPHKYRMLIAMVDVIF  152 (233)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC--TTEEEECSCTTCGGGGGGGCCCEEEEE
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc--CCeEEEEcccCChhhhcccCCcEEEEE
Confidence            3457899999999999999999875 5689999999999988888887775  579999999987431111136899999


Q ss_pred             EcCcc--cHHHHHHHHccCcccCeEEEEEeCCC-------cHHHHHHHHHHHHHhCCeeeEEEEEecCCCCCceEEEEEE
Q 026122          152 ARAVA--EMRILAEYCLPLVRVGGLFVAAKGHD-------PQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCL  222 (243)
Q Consensus       152 ~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~-------~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~v~~~  222 (243)
                      ++...  ....+++.+.+.|||||.+++.....       .......-.+.++++||.+.+...+  ...+.+..+++..
T Consensus       153 ~~~~~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~--~~~~~~~~~v~~~  230 (233)
T 2ipx_A          153 ADVAQPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQLTL--EPYERDHAVVVGV  230 (233)
T ss_dssp             ECCCCTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHHHHHHTTGGGTEEEEEEEEC--TTTSSSEEEEEEE
T ss_pred             EcCCCccHHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHHHHHHHHHHHHHCCCceEEEEec--CCccCCcEEEEEE
Confidence            97542  23556888999999999999865321       0111222246677899988775442  2333445555554


Q ss_pred             e
Q 026122          223 K  223 (243)
Q Consensus       223 k  223 (243)
                      +
T Consensus       231 ~  231 (233)
T 2ipx_A          231 Y  231 (233)
T ss_dssp             E
T ss_pred             e
Confidence            4

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.70  E-value=1.8e-16  Score=132.48  Aligned_cols=127  Identities=21%  Similarity=0.162  Sum_probs=104.8

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHc-CCCCEEEEEccccccccCCcCCCCceEEE
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIA-CPDWKVTLLESMNKRCVFLEHAVSLT-QLLNVQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~-~~~~~v~~vD~s~~~~~~a~~~~~~~-~~~~v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      .++.+|||+|||+|..+..++.. .|+.+|+++|+|+.+++.++++.+.. +..+++++++|+.+.+..   .++||+|+
T Consensus        95 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~---~~~~D~v~  171 (258)
T 2pwy_A           95 APGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELE---EAAYDGVA  171 (258)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCC---TTCEEEEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCC---CCCcCEEE
Confidence            45889999999999999999987 56789999999999999999999888 766799999999887433   26799999


Q ss_pred             EcCcccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEE
Q 026122          152 ARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCS  206 (243)
Q Consensus       152 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~  206 (243)
                      ++. .+...+++.+.+.|+|||.+++.....  +...++.+.+++.||...+..+
T Consensus       172 ~~~-~~~~~~l~~~~~~L~~gG~l~~~~~~~--~~~~~~~~~l~~~gf~~~~~~~  223 (258)
T 2pwy_A          172 LDL-MEPWKVLEKAALALKPDRFLVAYLPNI--TQVLELVRAAEAHPFRLERVLE  223 (258)
T ss_dssp             EES-SCGGGGHHHHHHHEEEEEEEEEEESCH--HHHHHHHHHHTTTTEEEEEEEE
T ss_pred             ECC-cCHHHHHHHHHHhCCCCCEEEEEeCCH--HHHHHHHHHHHHCCCceEEEEE
Confidence            953 455688899999999999999877543  4556677778889988766544

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.70  E-value=4.9e-17  Score=133.85  Aligned_cols=106  Identities=14%  Similarity=0.096  Sum_probs=88.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  155 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~  155 (243)
                      +.+|||||||+|..++.+|...|+.+|+|||+|+.+++.++++++..++.|++++++|+.++......+++||.|+++..
T Consensus        35 ~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~~  114 (218)
T 3dxy_A           35 APVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFFP  114 (218)
T ss_dssp             CCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEESC
T ss_pred             CCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeCC
Confidence            67999999999999999999999999999999999999999999999998999999999885210001278999998621


Q ss_pred             ---c---c------HHHHHHHHccCcccCeEEEEEeCC
Q 026122          156 ---A---E------MRILAEYCLPLVRVGGLFVAAKGH  181 (243)
Q Consensus       156 ---~---~------~~~~l~~~~~~LkpgG~l~~~~~~  181 (243)
                         .   .      ...+++.+.++|||||.+++....
T Consensus       115 ~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~  152 (218)
T 3dxy_A          115 DPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDW  152 (218)
T ss_dssp             CCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             CCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCC
Confidence               1   1      135999999999999999987754

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.70  E-value=9.7e-17  Score=132.69  Aligned_cols=132  Identities=16%  Similarity=0.072  Sum_probs=98.4

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCC-HHHHHHH---HHHHHHcCCCCEEEEEccccccccCCcCCCCceEE
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESM-NKRCVFL---EHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVA  150 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s-~~~~~~a---~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I  150 (243)
                      ++.+|||||||+|..+..+|+..++.+|+|||+| +.+++.|   ++++++.++.+++++++|+++++..  ..+.+|.|
T Consensus        24 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~--~~d~v~~i  101 (225)
T 3p2e_A           24 FDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFE--LKNIADSI  101 (225)
T ss_dssp             CSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGG--GTTCEEEE
T ss_pred             CCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhh--ccCeEEEE
Confidence            3779999999999999999987888999999999 6666666   7777778888899999999998532  12567777


Q ss_pred             EEcCc-c--------cHHHHHHHHccCcccCeEEEEEeC--CC--------------cHHHHH--HHHHHHHHhCCeeeE
Q 026122          151 VARAV-A--------EMRILAEYCLPLVRVGGLFVAAKG--HD--------------PQEEVK--NSERAVQLMGASLLQ  203 (243)
Q Consensus       151 ~~~~~-~--------~~~~~l~~~~~~LkpgG~l~~~~~--~~--------------~~~~~~--~~~~~l~~~g~~~~~  203 (243)
                      .++-. .        +...+++++.++|||||.+++...  ..              ......  ++.+.++++||.+..
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~l~~aGf~v~~  181 (225)
T 3p2e_A          102 SILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSYEEAEIKKRGLPLLSKAYFLSEQYKAELSNSGFRIDD  181 (225)
T ss_dssp             EEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC--------------CCHHHHHSHHHHHHHHHHTCEEEE
T ss_pred             EEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccchhchhhhcCCCCCChhhcchHHHHHHHHHcCCCeee
Confidence            76531 1        235688999999999999988321  11              001111  266778899999888


Q ss_pred             EEEEe
Q 026122          204 LCSVE  208 (243)
Q Consensus       204 ~~~~~  208 (243)
                      .+.+.
T Consensus       182 ~~~~~  186 (225)
T 3p2e_A          182 VKELD  186 (225)
T ss_dssp             EEEEC
T ss_pred             eeecC
Confidence            77654

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.70  E-value=7.5e-17  Score=133.62  Aligned_cols=101  Identities=21%  Similarity=0.308  Sum_probs=89.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEcccccccc-CCcCCCCceEEEEc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGK-DVSFREQYDVAVAR  153 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~-~~~~~~~fD~I~~~  153 (243)
                      +.+|||||||+|..++.++...++.+|+++|+|+.+++.++++++..++. +++++++|+.+... ..  .++||+|++.
T Consensus        72 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~--~~~fD~V~~~  149 (232)
T 3ntv_A           72 VKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVN--DKVYDMIFID  149 (232)
T ss_dssp             CCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHT--TSCEEEEEEE
T ss_pred             CCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhc--cCCccEEEEc
Confidence            78999999999999999998767899999999999999999999999985 79999999987533 11  2789999997


Q ss_pred             C-cccHHHHHHHHccCcccCeEEEEE
Q 026122          154 A-VAEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       154 ~-~~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                      . ...+..+++.+.++|+|||.+++.
T Consensus       150 ~~~~~~~~~l~~~~~~LkpgG~lv~d  175 (232)
T 3ntv_A          150 AAKAQSKKFFEIYTPLLKHQGLVITD  175 (232)
T ss_dssp             TTSSSHHHHHHHHGGGEEEEEEEEEE
T ss_pred             CcHHHHHHHHHHHHHhcCCCeEEEEe
Confidence            6 557889999999999999998873

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.70  E-value=1.6e-16  Score=135.90  Aligned_cols=111  Identities=17%  Similarity=0.179  Sum_probs=92.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccccccCCcCCCCc---eEE
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQY---DVA  150 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~f---D~I  150 (243)
                      ++.+|||+|||+|.+++.++.. |+++|+|+|+|+.+++.|+++++.+++.+ ++++++|+.+...     ++|   |+|
T Consensus       123 ~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~-----~~f~~~D~I  196 (284)
T 1nv8_A          123 GIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFK-----EKFASIEMI  196 (284)
T ss_dssp             TCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGG-----GGTTTCCEE
T ss_pred             CCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcc-----cccCCCCEE
Confidence            3679999999999999999988 88999999999999999999999999875 9999999987421     468   999


Q ss_pred             EEcCc--------------c---------cHHHHHHHHc-cCcccCeEEEEEeCCCcHHHHHHHH
Q 026122          151 VARAV--------------A---------EMRILAEYCL-PLVRVGGLFVAAKGHDPQEEVKNSE  191 (243)
Q Consensus       151 ~~~~~--------------~---------~~~~~l~~~~-~~LkpgG~l~~~~~~~~~~~~~~~~  191 (243)
                      ++|..              .         +-..+++.+. +.|+|||.+++..+..+.+++.++.
T Consensus       197 vsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~~q~~~v~~~~  261 (284)
T 1nv8_A          197 LSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGEDQVEELKKIV  261 (284)
T ss_dssp             EECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTTCHHHHTTTS
T ss_pred             EEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECchHHHHHHHHH
Confidence            99720              0         0126888999 9999999999988887766665443

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.70  E-value=1.8e-16  Score=126.93  Aligned_cols=104  Identities=18%  Similarity=0.215  Sum_probs=87.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~-  154 (243)
                      +.+|||+|||+|..++.++. .+..+|+|+|+|+.+++.++++++.+++.+++++++|+.++.... ..++||+|+++. 
T Consensus        45 ~~~vLDlgcG~G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-~~~~fD~i~~~~p  122 (189)
T 3p9n_A           45 GLAVLDLYAGSGALGLEALS-RGAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAG-TTSPVDLVLADPP  122 (189)
T ss_dssp             TCEEEEETCTTCHHHHHHHH-TTCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHC-CSSCCSEEEECCC
T ss_pred             CCEEEEeCCCcCHHHHHHHH-CCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhc-cCCCccEEEECCC
Confidence            78999999999999987765 356799999999999999999999999878999999998864311 026899999974 


Q ss_pred             --c--ccHHHHHHHHcc--CcccCeEEEEEeCC
Q 026122          155 --V--AEMRILAEYCLP--LVRVGGLFVAAKGH  181 (243)
Q Consensus       155 --~--~~~~~~l~~~~~--~LkpgG~l~~~~~~  181 (243)
                        .  ..+..+++.+.+  +|+|||.+++....
T Consensus       123 ~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~  155 (189)
T 3p9n_A          123 YNVDSADVDAILAALGTNGWTREGTVAVVERAT  155 (189)
T ss_dssp             TTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEET
T ss_pred             CCcchhhHHHHHHHHHhcCccCCCeEEEEEecC
Confidence              1  357889999988  99999999987743

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.70  E-value=4.6e-16  Score=132.28  Aligned_cols=126  Identities=16%  Similarity=0.199  Sum_probs=101.7

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEEE
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      +++.+|||||||+|..+..++... +.+|+|+|+|+.+++.++++.+..++. +++++.+|+.+++      ++||+|++
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~------~~fD~v~~  135 (287)
T 1kpg_A           63 QPGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD------EPVDRIVS  135 (287)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC------CCCSEEEE
T ss_pred             CCcCEEEEECCcccHHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC------CCeeEEEE
Confidence            347899999999999999998665 459999999999999999999888874 6999999998753      67999998


Q ss_pred             cC----c--ccHHHHHHHHccCcccCeEEEEEeCC--CcH------------------------------HHHHHHHHHH
Q 026122          153 RA----V--AEMRILAEYCLPLVRVGGLFVAAKGH--DPQ------------------------------EEVKNSERAV  194 (243)
Q Consensus       153 ~~----~--~~~~~~l~~~~~~LkpgG~l~~~~~~--~~~------------------------------~~~~~~~~~l  194 (243)
                      ..    +  .++..+++++.++|||||.+++....  ...                              ....++.+.+
T Consensus       136 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l  215 (287)
T 1kpg_A          136 IGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPMVQECA  215 (287)
T ss_dssp             ESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHH
T ss_pred             eCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCCCHHHHHHHH
Confidence            64    2  46789999999999999999876521  100                              0234566778


Q ss_pred             HHhCCeeeEEEE
Q 026122          195 QLMGASLLQLCS  206 (243)
Q Consensus       195 ~~~g~~~~~~~~  206 (243)
                      +++||.+++...
T Consensus       216 ~~aGf~~~~~~~  227 (287)
T 1kpg_A          216 SANGFTVTRVQS  227 (287)
T ss_dssp             HTTTCEEEEEEE
T ss_pred             HhCCcEEEEEEe
Confidence            899998887764

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.70  E-value=2.2e-16  Score=131.41  Aligned_cols=119  Identities=18%  Similarity=0.113  Sum_probs=93.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH------cCCCCEEEEEccccc-cc--cCCcCCC
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSL------TQLLNVQIVRGRAET-LG--KDVSFRE  145 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~------~~~~~v~~~~~d~~~-~~--~~~~~~~  145 (243)
                      ++.+|||||||+|..++.+|...|+.+|+|||+|+.+++.|+++++.      .+..|++++++|+.+ ++  ..   .+
T Consensus        46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~---~~  122 (235)
T 3ckk_A           46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFY---KG  122 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCC---TT
T ss_pred             CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCC---Cc
Confidence            36789999999999999999988999999999999999999988764      456789999999987 43  22   26


Q ss_pred             CceEEEEcCcccH------------HHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhC
Q 026122          146 QYDVAVARAVAEM------------RILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMG  198 (243)
Q Consensus       146 ~fD~I~~~~~~~~------------~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g  198 (243)
                      +||.|+++....+            ..+++.+.++|||||.+++....  ......+.+.+...+
T Consensus       123 ~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~--~~~~~~~~~~l~~~~  185 (235)
T 3ckk_A          123 QLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDV--LELHDWMCTHFEEHP  185 (235)
T ss_dssp             CEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESC--HHHHHHHHHHHHTST
T ss_pred             CeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCC--HHHHHHHHHHHHHCC
Confidence            8999998642221            47999999999999999987653  233444556666776

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.70  E-value=1.7e-16  Score=130.87  Aligned_cols=102  Identities=17%  Similarity=0.267  Sum_probs=87.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCC--CEEEEEccccccccCCcCCCCceEEEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLL--NVQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      +.+|||||||+|..++.+|...+ +++|+++|+|+++++.|+++++..++.  +++++++|+.+..... ..++||+|++
T Consensus        57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~-~~~~fD~V~~  135 (221)
T 3dr5_A           57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRL-ANDSYQLVFG  135 (221)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGS-CTTCEEEEEE
T ss_pred             CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHh-cCCCcCeEEE
Confidence            34999999999999999998764 789999999999999999999999986  6999999998764321 0378999999


Q ss_pred             cC-cccHHHHHHHHccCcccCeEEEEE
Q 026122          153 RA-VAEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       153 ~~-~~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                      .+ ...+..+++.+.++|+|||.+++-
T Consensus       136 d~~~~~~~~~l~~~~~~LkpGG~lv~d  162 (221)
T 3dr5_A          136 QVSPMDLKALVDAAWPLLRRGGALVLA  162 (221)
T ss_dssp             CCCTTTHHHHHHHHHHHEEEEEEEEET
T ss_pred             cCcHHHHHHHHHHHHHHcCCCcEEEEe
Confidence            76 346788999999999999998873

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.70  E-value=2e-16  Score=133.05  Aligned_cols=125  Identities=17%  Similarity=0.080  Sum_probs=100.7

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEE
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      +.++.+|||+|||+|.+++.+++..  .+|+|+|+|+.+++.++++++.+++. +++.++|+.+...    .++||+|++
T Consensus       118 ~~~~~~VLDiGcG~G~l~~~la~~g--~~v~gvDi~~~~v~~a~~n~~~~~~~-v~~~~~d~~~~~~----~~~fD~Vv~  190 (254)
T 2nxc_A          118 LRPGDKVLDLGTGSGVLAIAAEKLG--GKALGVDIDPMVLPQAEANAKRNGVR-PRFLEGSLEAALP----FGPFDLLVA  190 (254)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHTT--CEEEEEESCGGGHHHHHHHHHHTTCC-CEEEESCHHHHGG----GCCEEEEEE
T ss_pred             cCCCCEEEEecCCCcHHHHHHHHhC--CeEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChhhcCc----CCCCCEEEE
Confidence            3458899999999999998888653  39999999999999999999999887 8999999887421    268999999


Q ss_pred             cCcc-cHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEE
Q 026122          153 RAVA-EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCS  206 (243)
Q Consensus       153 ~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~  206 (243)
                      +... .+..+++.+.++|+|||++++..-.  .....++.+.+++.||.+.+...
T Consensus       191 n~~~~~~~~~l~~~~~~LkpgG~lils~~~--~~~~~~v~~~l~~~Gf~~~~~~~  243 (254)
T 2nxc_A          191 NLYAELHAALAPRYREALVPGGRALLTGIL--KDRAPLVREAMAGAGFRPLEEAA  243 (254)
T ss_dssp             ECCHHHHHHHHHHHHHHEEEEEEEEEEEEE--GGGHHHHHHHHHHTTCEEEEEEE
T ss_pred             CCcHHHHHHHHHHHHHHcCCCCEEEEEeec--cCCHHHHHHHHHHCCCEEEEEec
Confidence            8643 4678999999999999998885421  12345566777899998877654

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.70  E-value=6.3e-16  Score=133.35  Aligned_cols=148  Identities=12%  Similarity=0.095  Sum_probs=111.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH----cCCCCEEEEEccccccccCCcCCCCceEEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSL----TQLLNVQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~----~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      +.+|||||||+|..+..+++..+..+|++||+|+.+++.++++...    ....+++++++|+.++.... ..++||+|+
T Consensus        96 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~-~~~~fDvIi  174 (304)
T 3bwc_A           96 PERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQT-PDNTYDVVI  174 (304)
T ss_dssp             CCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSS-CTTCEEEEE
T ss_pred             CCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhc-cCCceeEEE
Confidence            6899999999999998888765678999999999999999988643    12346999999998865320 126899999


Q ss_pred             EcCcccH--------HHHHHHHccCcccCeEEEEEeCC--CcHHHHHHHHHHHHHhCCeeeEEEEEecCCCC-CceEEEE
Q 026122          152 ARAVAEM--------RILAEYCLPLVRVGGLFVAAKGH--DPQEEVKNSERAVQLMGASLLQLCSVESQSPF-GQRTAVV  220 (243)
Q Consensus       152 ~~~~~~~--------~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~-~~r~~v~  220 (243)
                      ++.....        .++++.+.++|+|||.+++..+.  .......++.+.+++.||..+.......+..+ +.-..++
T Consensus       175 ~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~GF~~v~~~~~~vP~yp~g~w~f~~  254 (304)
T 3bwc_A          175 IDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRETGFASVQYALMHVPTYPCGSIGTLV  254 (304)
T ss_dssp             EECC---------CCHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHHHTCSEEEEEECCCTTSTTSCCEEEE
T ss_pred             ECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhCCCCcEEEEEeecccccCcceEEEE
Confidence            9753211        68899999999999999987643  23456677888899999988777655555543 3445555


Q ss_pred             EEee
Q 026122          221 CLKS  224 (243)
Q Consensus       221 ~~k~  224 (243)
                      +.|.
T Consensus       255 as~~  258 (304)
T 3bwc_A          255 CSKK  258 (304)
T ss_dssp             EESS
T ss_pred             EeCC
Confidence            5554

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.70  E-value=4.7e-16  Score=128.55  Aligned_cols=94  Identities=19%  Similarity=0.232  Sum_probs=80.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~-  154 (243)
                      +.+|||+|||+|..+..++..   .+|+|+|+|+.+++.++++....+ .+++++++|+.+++..    ++||+|++.. 
T Consensus        34 ~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~~----~~fD~v~~~~~  105 (243)
T 3d2l_A           34 GKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMETN-RHVDFWVQDMRELELP----EPVDAITILCD  105 (243)
T ss_dssp             TCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCGGGCCCS----SCEEEEEECTT
T ss_pred             CCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhcC-CceEEEEcChhhcCCC----CCcCEEEEeCC
Confidence            689999999999998877754   799999999999999999988776 3689999999887542    6899999863 


Q ss_pred             ----c---ccHHHHHHHHccCcccCeEEEE
Q 026122          155 ----V---AEMRILAEYCLPLVRVGGLFVA  177 (243)
Q Consensus       155 ----~---~~~~~~l~~~~~~LkpgG~l~~  177 (243)
                          .   .+...+++.+.++|+|||.+++
T Consensus       106 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~  135 (243)
T 3d2l_A          106 SLNYLQTEADVKQTFDSAARLLTDGGKLLF  135 (243)
T ss_dssp             GGGGCCSHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             chhhcCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence                1   3567899999999999999887

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.69  E-value=2.3e-16  Score=132.68  Aligned_cols=129  Identities=15%  Similarity=0.026  Sum_probs=93.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH-----------------cCCCCEEEEEcccccc
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSL-----------------TQLLNVQIVRGRAETL  137 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~-----------------~~~~~v~~~~~d~~~~  137 (243)
                      ++.+|||+|||+|..+..||..  +.+|+|||+|+.|++.|++....                 ....+++++++|+.++
T Consensus        68 ~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l  145 (252)
T 2gb4_A           68 SGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDL  145 (252)
T ss_dssp             CSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTG
T ss_pred             CCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccC
Confidence            4789999999999999999875  67999999999999998765431                 0124699999999998


Q ss_pred             ccCCcCCCCceEEEEcCc------ccHHHHHHHHccCcccCeEEEEEe-C--------CCcHHHHHHHHHHHHHhCCeee
Q 026122          138 GKDVSFREQYDVAVARAV------AEMRILAEYCLPLVRVGGLFVAAK-G--------HDPQEEVKNSERAVQLMGASLL  202 (243)
Q Consensus       138 ~~~~~~~~~fD~I~~~~~------~~~~~~l~~~~~~LkpgG~l~~~~-~--------~~~~~~~~~~~~~l~~~g~~~~  202 (243)
                      +...  .++||+|++++.      .....+++++.++|||||++++.. .        +...-...++.+.+.. +|+++
T Consensus       146 ~~~~--~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~~g~~~~~~~~el~~~l~~-~f~v~  222 (252)
T 2gb4_A          146 PRAN--IGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTKHAGPPFYVPSAELKRLFGT-KCSMQ  222 (252)
T ss_dssp             GGGC--CCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSCCCSSCCCCHHHHHHHHTT-TEEEE
T ss_pred             Cccc--CCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCccCCCCCCCCCHHHHHHHhhC-CeEEE
Confidence            6531  268999998642      246789999999999999986432 1        1001122344555555 58877


Q ss_pred             EEEEEe
Q 026122          203 QLCSVE  208 (243)
Q Consensus       203 ~~~~~~  208 (243)
                      ..+.+.
T Consensus       223 ~~~~~~  228 (252)
T 2gb4_A          223 CLEEVD  228 (252)
T ss_dssp             EEEEEE
T ss_pred             EEeccc
Confidence            776554

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.69  E-value=1.6e-15  Score=123.28  Aligned_cols=95  Identities=16%  Similarity=0.100  Sum_probs=80.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      ++.+|||+|||+|..+..++..  +.+|+|+|+|+.+++.+++    .+..+++++++|+.++ ..   .++||+|+++.
T Consensus        46 ~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~----~~~~~~~~~~~d~~~~-~~---~~~~D~v~~~~  115 (218)
T 3ou2_A           46 IRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGR----HGLDNVEFRQQDLFDW-TP---DRQWDAVFFAH  115 (218)
T ss_dssp             SCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGG----GCCTTEEEEECCTTSC-CC---SSCEEEEEEES
T ss_pred             CCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHh----cCCCCeEEEecccccC-CC---CCceeEEEEec
Confidence            3679999999999999999877  5799999999999998877    5656799999999887 32   27899999975


Q ss_pred             c----cc--HHHHHHHHccCcccCeEEEEEe
Q 026122          155 V----AE--MRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       155 ~----~~--~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      .    .+  ...+++++.++|+|||.+++..
T Consensus       116 ~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  146 (218)
T 3ou2_A          116 WLAHVPDDRFEAFWESVRSAVAPGGVVEFVD  146 (218)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhhcCCHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence            2    22  4889999999999999998875

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.69  E-value=1.3e-15  Score=121.18  Aligned_cols=115  Identities=16%  Similarity=0.205  Sum_probs=93.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC--EEEEEccccccccCCcCCCCceEEEE
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN--VQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~--v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      ++.+|||+|||+|..+..++..  +.+|+|+|+|+.+++.++++.+..++.+  ++++++|+.+...    .++||+|++
T Consensus        52 ~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~D~v~~  125 (194)
T 1dus_A           52 KDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK----DRKYNKIIT  125 (194)
T ss_dssp             TTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT----TSCEEEEEE
T ss_pred             CCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccc----cCCceEEEE
Confidence            3789999999999999888876  6799999999999999999999999887  9999999987432    268999999


Q ss_pred             cCc-----ccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHh
Q 026122          153 RAV-----AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLM  197 (243)
Q Consensus       153 ~~~-----~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~  197 (243)
                      +..     .....+++.+.++|+|||.+++.......  ..++.+.+++.
T Consensus       126 ~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~--~~~~~~~l~~~  173 (194)
T 1dus_A          126 NPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTKQG--AKSLAKYMKDV  173 (194)
T ss_dssp             CCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEESTHH--HHHHHHHHHHH
T ss_pred             CCCcccchhHHHHHHHHHHHHcCCCCEEEEEECCCCC--hHHHHHHHHHH
Confidence            753     35678999999999999999988754432  23344555555

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.69  E-value=4.6e-16  Score=130.09  Aligned_cols=99  Identities=14%  Similarity=0.210  Sum_probs=84.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      ++.+|||+|||+|..+..++..  +.+|+|+|+|+.+++.+++++ ..+..+++++++|+.+++..   +++||+|+++.
T Consensus        39 ~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~~~---~~~fD~v~~~~  112 (263)
T 2yqz_A           39 EEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKI-AGVDRKVQVVQADARAIPLP---DESVHGVIVVH  112 (263)
T ss_dssp             SCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHT-TTSCTTEEEEESCTTSCCSC---TTCEEEEEEES
T ss_pred             CCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHh-hccCCceEEEEcccccCCCC---CCCeeEEEECC
Confidence            3789999999999999888865  579999999999999999887 33445799999999887643   26899999975


Q ss_pred             ----cccHHHHHHHHccCcccCeEEEEEe
Q 026122          155 ----VAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       155 ----~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                          ..+...+++++.++|+|||.+++..
T Consensus       113 ~l~~~~~~~~~l~~~~~~L~pgG~l~~~~  141 (263)
T 2yqz_A          113 LWHLVPDWPKVLAEAIRVLKPGGALLEGW  141 (263)
T ss_dssp             CGGGCTTHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             chhhcCCHHHHHHHHHHHCCCCcEEEEEe
Confidence                3467999999999999999998763

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.68  E-value=1.9e-16  Score=129.47  Aligned_cols=130  Identities=18%  Similarity=0.089  Sum_probs=97.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHH----HHcCCCCEEEEEccccccccCCcCCCCceEE
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAV----SLTQLLNVQIVRGRAETLGKDVSFREQYDVA  150 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~----~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I  150 (243)
                      ++.+|||+|||+|..+..++...|+.+|+|+|+|+.|++.+.+.+    +..++.+++++++|+.+++...   +. |.|
T Consensus        27 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~---~~-d~v  102 (218)
T 3mq2_A           27 YDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLS---GV-GEL  102 (218)
T ss_dssp             SSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCC---CE-EEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCC---CC-CEE
Confidence            378999999999999999999988999999999999888543333    3456678999999999976542   34 766


Q ss_pred             EEcC-c--------ccHHHHHHHHccCcccCeEEEEEeCC---------------CcHHHH-HHHHHHHHHhCCeeeEEE
Q 026122          151 VARA-V--------AEMRILAEYCLPLVRVGGLFVAAKGH---------------DPQEEV-KNSERAVQLMGASLLQLC  205 (243)
Q Consensus       151 ~~~~-~--------~~~~~~l~~~~~~LkpgG~l~~~~~~---------------~~~~~~-~~~~~~l~~~g~~~~~~~  205 (243)
                      +... .        .+...+++++.++|||||.+++..+.               ...... ..+.+.+..+||.+.++.
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~i~~~~  182 (218)
T 3mq2_A          103 HVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAGWKLADCR  182 (218)
T ss_dssp             EEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred             EEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEeccccccccccccccCCccchHHHHHHHHHHHHHcCCCceeee
Confidence            6422 1        22378899999999999999986421               111222 236677889999998876


Q ss_pred             EEe
Q 026122          206 SVE  208 (243)
Q Consensus       206 ~~~  208 (243)
                      .+.
T Consensus       183 ~~~  185 (218)
T 3mq2_A          183 YLE  185 (218)
T ss_dssp             EEC
T ss_pred             ccc
Confidence            644

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.68  E-value=1.3e-15  Score=124.74  Aligned_cols=104  Identities=20%  Similarity=0.258  Sum_probs=87.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccccccCC--cCCCCceEEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDV--SFREQYDVAV  151 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~--~~~~~fD~I~  151 (243)
                      +.+|||||||+|..++.++...| +++|+++|+++.+++.++++++..++.+ ++++++|+.+.....  ...++||+|+
T Consensus        59 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v~  138 (223)
T 3duw_A           59 ARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFIF  138 (223)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEEE
T ss_pred             CCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEEE
Confidence            78999999999999999998877 7899999999999999999999999865 999999997642210  0014699999


Q ss_pred             EcC-cccHHHHHHHHccCcccCeEEEEEe
Q 026122          152 ARA-VAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       152 ~~~-~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      +.. ......+++.+.++|+|||.+++..
T Consensus       139 ~d~~~~~~~~~l~~~~~~L~pgG~lv~~~  167 (223)
T 3duw_A          139 IDADKQNNPAYFEWALKLSRPGTVIIGDN  167 (223)
T ss_dssp             ECSCGGGHHHHHHHHHHTCCTTCEEEEES
T ss_pred             EcCCcHHHHHHHHHHHHhcCCCcEEEEeC
Confidence            976 4467899999999999999877754

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.68  E-value=4e-16  Score=132.30  Aligned_cols=124  Identities=15%  Similarity=0.117  Sum_probs=98.1

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      .++.+|||||||+|..+..++.  ++.+|+|+|+|+.+++.++++.     .+++++++|+.+++.    +++||+|+++
T Consensus        56 ~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~----~~~fD~v~~~  124 (279)
T 3ccf_A           56 QPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNY-----PHLHFDVADARNFRV----DKPLDAVFSN  124 (279)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHC-----TTSCEEECCTTTCCC----SSCEEEEEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhC-----CCCEEEECChhhCCc----CCCcCEEEEc
Confidence            3478999999999999988886  6789999999999999888764     468899999998764    2789999997


Q ss_pred             C----cccHHHHHHHHccCcccCeEEEEEeCC-CcHH---------------------------HHHHHHHHHHHhCCee
Q 026122          154 A----VAEMRILAEYCLPLVRVGGLFVAAKGH-DPQE---------------------------EVKNSERAVQLMGASL  201 (243)
Q Consensus       154 ~----~~~~~~~l~~~~~~LkpgG~l~~~~~~-~~~~---------------------------~~~~~~~~l~~~g~~~  201 (243)
                      .    +.+...+++++.++|||||++++.... ....                           ...++.+.++++||.+
T Consensus       125 ~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~  204 (279)
T 3ccf_A          125 AMLHWVKEPEAAIASIHQALKSGGRFVAEFGGKGNIKYILEALYNALETLGIHNPQALNPWYFPSIGEYVNILEKQGFDV  204 (279)
T ss_dssp             SCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECTTTTHHHHHHHHHHHHHHTCCCGGGGCCCCCCCHHHHHHHHHHHTEEE
T ss_pred             chhhhCcCHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHhcCCccccCcCceeCCCHHHHHHHHHHcCCEE
Confidence            5    357899999999999999999986632 1100                           1234566777889988


Q ss_pred             eEEEEEe
Q 026122          202 LQLCSVE  208 (243)
Q Consensus       202 ~~~~~~~  208 (243)
                      +....+.
T Consensus       205 ~~~~~~~  211 (279)
T 3ccf_A          205 TYAALFN  211 (279)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEec
Confidence            7766554

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.68  E-value=5.2e-16  Score=130.36  Aligned_cols=92  Identities=18%  Similarity=0.153  Sum_probs=78.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~-  154 (243)
                      +.+|||||||+|..+..++..  +.+|+|+|+|+.+++.++++..     +++++++|+.+++.    +++||+|++.. 
T Consensus        51 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~-----~~~~~~~d~~~~~~----~~~fD~v~~~~~  119 (263)
T 3pfg_A           51 AASLLDVACGTGMHLRHLADS--FGTVEGLELSADMLAIARRRNP-----DAVLHHGDMRDFSL----GRRFSAVTCMFS  119 (263)
T ss_dssp             CCEEEEETCTTSHHHHHHTTT--SSEEEEEESCHHHHHHHHHHCT-----TSEEEECCTTTCCC----SCCEEEEEECTT
T ss_pred             CCcEEEeCCcCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCC-----CCEEEECChHHCCc----cCCcCEEEEcCc
Confidence            689999999999999888865  4699999999999999887643     68999999998765    27899999974 


Q ss_pred             ----c---ccHHHHHHHHccCcccCeEEEEE
Q 026122          155 ----V---AEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       155 ----~---~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                          +   .+...+++.+.++|||||.+++.
T Consensus       120 ~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~  150 (263)
T 3pfg_A          120 SIGHLAGQAELDAALERFAAHVLPDGVVVVE  150 (263)
T ss_dssp             GGGGSCHHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred             hhhhcCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence                2   25678899999999999999884

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.68  E-value=6.5e-17  Score=134.50  Aligned_cols=128  Identities=12%  Similarity=0.082  Sum_probs=95.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      ++.+|||||||+|..+..+++..+ .+|++||+|+.+++.|+++.+..+. +++++.+|+.+..... ..++||.|+...
T Consensus        60 ~G~rVLdiG~G~G~~~~~~~~~~~-~~v~~id~~~~~~~~a~~~~~~~~~-~~~~~~~~a~~~~~~~-~~~~FD~i~~D~  136 (236)
T 3orh_A           60 KGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTH-KVIPLKGLWEDVAPTL-PDGHFDGILYDT  136 (236)
T ss_dssp             TCEEEEEECCTTSHHHHHHTTSCE-EEEEEEECCHHHHHHHHHHGGGCSS-EEEEEESCHHHHGGGS-CTTCEEEEEECC
T ss_pred             CCCeEEEECCCccHHHHHHHHhCC-cEEEEEeCCHHHHHHHHHHHhhCCC-ceEEEeehHHhhcccc-cccCCceEEEee
Confidence            388999999999999888886544 5899999999999999998887664 5889999988764321 136899998753


Q ss_pred             ---------cccHHHHHHHHccCcccCeEEEEEeCC----------CcH--HHHHHHHHHHHHhCCeeeEEE
Q 026122          155 ---------VAEMRILAEYCLPLVRVGGLFVAAKGH----------DPQ--EEVKNSERAVQLMGASLLQLC  205 (243)
Q Consensus       155 ---------~~~~~~~l~~~~~~LkpgG~l~~~~~~----------~~~--~~~~~~~~~l~~~g~~~~~~~  205 (243)
                               ..+...+++++.|+|||||+|++....          ...  .-.+.....|.++||+...+.
T Consensus       137 ~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~eaGF~~~~i~  208 (236)
T 3orh_A          137 YPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITIMFEETQVPALLEAGFRRENIR  208 (236)
T ss_dssp             CCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSCHHHHHHHHTHHHHHHHTCCGGGEE
T ss_pred             eecccchhhhcchhhhhhhhhheeCCCCEEEEEecCCchhhhhhhhhhhhhhhHHHHHHHHHHcCCeEEEEE
Confidence                     235788999999999999999875410          100  111234456778999876654

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.68  E-value=1.6e-15  Score=130.88  Aligned_cols=126  Identities=14%  Similarity=0.102  Sum_probs=102.5

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEEE
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      .++.+|||||||+|..+..++... +++|+|+|+|+.+++.++++.+..++. +++++++|+.+++      ++||+|++
T Consensus        89 ~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------~~fD~v~~  161 (318)
T 2fk8_A           89 KPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA------EPVDRIVS  161 (318)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC------CCCSEEEE
T ss_pred             CCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC------CCcCEEEE
Confidence            457899999999999999998775 579999999999999999999988875 4999999998763      67999998


Q ss_pred             cC----c--ccHHHHHHHHccCcccCeEEEEEeCC-CcHH-------------------------------HHHHHHHHH
Q 026122          153 RA----V--AEMRILAEYCLPLVRVGGLFVAAKGH-DPQE-------------------------------EVKNSERAV  194 (243)
Q Consensus       153 ~~----~--~~~~~~l~~~~~~LkpgG~l~~~~~~-~~~~-------------------------------~~~~~~~~l  194 (243)
                      ..    +  .++..+++++.++|||||.+++.... ....                               ...++.+.+
T Consensus       162 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l  241 (318)
T 2fk8_A          162 IEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEMMVEHG  241 (318)
T ss_dssp             ESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHH
T ss_pred             eChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCCCHHHHHHHH
Confidence            74    2  46899999999999999999986521 1110                               134566778


Q ss_pred             HHhCCeeeEEEE
Q 026122          195 QLMGASLLQLCS  206 (243)
Q Consensus       195 ~~~g~~~~~~~~  206 (243)
                      +++||.+++...
T Consensus       242 ~~aGf~~~~~~~  253 (318)
T 2fk8_A          242 EKAGFTVPEPLS  253 (318)
T ss_dssp             HHTTCBCCCCEE
T ss_pred             HhCCCEEEEEEe
Confidence            899998877655

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.68  E-value=3.7e-16  Score=131.79  Aligned_cols=132  Identities=17%  Similarity=0.126  Sum_probs=94.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----------------------------CC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL-----------------------------LN  126 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-----------------------------~~  126 (243)
                      +.+|||||||+|..++.++.. ...+|+|+|+|+.|++.|+++++....                             .+
T Consensus        56 g~~vLDiGCG~G~~~~~~~~~-~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (263)
T 2a14_A           56 GDTLIDIGSGPTIYQVLAACD-SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAA  134 (263)
T ss_dssp             EEEEEESSCTTCCGGGTTGGG-TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred             CceEEEeCCCccHHHHHHHHh-hhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHhh
Confidence            789999999999887555533 224799999999999999987654320                             12


Q ss_pred             EE-EEEcccccccc-CCcCCCCceEEEEcCc--------ccHHHHHHHHccCcccCeEEEEEeC--CCc-----------
Q 026122          127 VQ-IVRGRAETLGK-DVSFREQYDVAVARAV--------AEMRILAEYCLPLVRVGGLFVAAKG--HDP-----------  183 (243)
Q Consensus       127 v~-~~~~d~~~~~~-~~~~~~~fD~I~~~~~--------~~~~~~l~~~~~~LkpgG~l~~~~~--~~~-----------  183 (243)
                      ++ ++++|+.+... .....++||+|++...        .++..+++++.++|||||.|++...  ...           
T Consensus       135 i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~~g~~~~~~~  214 (263)
T 2a14_A          135 VKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCV  214 (263)
T ss_dssp             EEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECC
T ss_pred             hheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCccceeCCeEeecc
Confidence            44 88999987422 1011268999999742        3457889999999999999998741  100           


Q ss_pred             HHHHHHHHHHHHHhCCeeeEEEEEe
Q 026122          184 QEEVKNSERAVQLMGASLLQLCSVE  208 (243)
Q Consensus       184 ~~~~~~~~~~l~~~g~~~~~~~~~~  208 (243)
                      .-...++.+.++++||.+++...+.
T Consensus       215 ~~~~~~l~~~l~~aGF~i~~~~~~~  239 (263)
T 2a14_A          215 ALEKGEVEQAVLDAGFDIEQLLHSP  239 (263)
T ss_dssp             CCCHHHHHHHHHHTTEEEEEEEEEC
T ss_pred             ccCHHHHHHHHHHCCCEEEEEeecc
Confidence            0123466777889999998877653

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.68  E-value=2.6e-16  Score=132.70  Aligned_cols=93  Identities=22%  Similarity=0.157  Sum_probs=79.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~-  154 (243)
                      +.+|||||||+|..+..++..  +.+|+|||+|+.|++.|++      ..+++++++++++++..+   ++||+|++.. 
T Consensus        40 ~~~vLDvGcGtG~~~~~l~~~--~~~v~gvD~s~~ml~~a~~------~~~v~~~~~~~e~~~~~~---~sfD~v~~~~~  108 (257)
T 4hg2_A           40 RGDALDCGCGSGQASLGLAEF--FERVHAVDPGEAQIRQALR------HPRVTYAVAPAEDTGLPP---ASVDVAIAAQA  108 (257)
T ss_dssp             SSEEEEESCTTTTTHHHHHTT--CSEEEEEESCHHHHHTCCC------CTTEEEEECCTTCCCCCS---SCEEEEEECSC
T ss_pred             CCCEEEEcCCCCHHHHHHHHh--CCEEEEEeCcHHhhhhhhh------cCCceeehhhhhhhcccC---CcccEEEEeee
Confidence            579999999999999888865  4799999999999887653      247999999999987653   7899999965 


Q ss_pred             --cccHHHHHHHHccCcccCeEEEEEe
Q 026122          155 --VAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       155 --~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                        ..+.+.+++++.++|||||.|++..
T Consensus       109 ~h~~~~~~~~~e~~rvLkpgG~l~~~~  135 (257)
T 4hg2_A          109 MHWFDLDRFWAELRRVARPGAVFAAVT  135 (257)
T ss_dssp             CTTCCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhHhhHHHHHHHHHHHcCCCCEEEEEE
Confidence              3468899999999999999998766

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.67  E-value=6.4e-16  Score=131.45  Aligned_cols=127  Identities=16%  Similarity=0.166  Sum_probs=101.6

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccccccCCcCCCCceEE
Q 026122           72 SCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVA  150 (243)
Q Consensus        72 ~~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~fD~I  150 (243)
                      .++++.+|||+|||+|.+++.+|.. ++++|+++|+|+.+++.+++|++.+++.+ ++++++|..++...    +.||.|
T Consensus       122 ~~~~g~~VlD~~aG~G~~~i~~a~~-g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~----~~~D~V  196 (278)
T 3k6r_A          122 VAKPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGE----NIADRI  196 (278)
T ss_dssp             HCCTTCEEEETTCTTTTTTHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCC----SCEEEE
T ss_pred             hcCCCCEEEEecCcCcHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccc----cCCCEE
Confidence            3567999999999999999998876 46799999999999999999999999975 99999999987653    689999


Q ss_pred             EEcCcccHHHHHHHHccCcccCeEEEEEeC----CCcHHHHHHHHHHHHHhCCeeeE
Q 026122          151 VARAVAEMRILAEYCLPLVRVGGLFVAAKG----HDPQEEVKNSERAVQLMGASLLQ  203 (243)
Q Consensus       151 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~----~~~~~~~~~~~~~l~~~g~~~~~  203 (243)
                      +++....-..++..+.++||+||.+.+...    .........+.+..+..|+.+..
T Consensus       197 i~~~p~~~~~~l~~a~~~lk~gG~ih~~~~~~e~~~~~~~~e~i~~~~~~~g~~v~~  253 (278)
T 3k6r_A          197 LMGYVVRTHEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEK  253 (278)
T ss_dssp             EECCCSSGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEE
T ss_pred             EECCCCcHHHHHHHHHHHcCCCCEEEEEeeecccccchhHHHHHHHHHHHcCCcEEE
Confidence            998766667788888899999999865431    11122234455666788987643

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.67  E-value=3.4e-16  Score=126.99  Aligned_cols=106  Identities=14%  Similarity=0.093  Sum_probs=86.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCC--CCEEEEEccccccccCCcCCCC-ceEEEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL--LNVQIVRGRAETLGKDVSFREQ-YDVAVA  152 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~-fD~I~~  152 (243)
                      +.+|||+|||+|..++.++.. ...+|+|+|+|+.+++.++++++.+++  .+++++++|+.++.... ..++ ||+|++
T Consensus        54 ~~~vLDlGcGtG~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~~~~fD~I~~  131 (201)
T 2ift_A           54 QSECLDGFAGSGSLGFEALSR-QAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQP-QNQPHFDVVFL  131 (201)
T ss_dssp             TCEEEETTCTTCHHHHHHHHT-TCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSC-CSSCCEEEEEE
T ss_pred             CCeEEEcCCccCHHHHHHHHc-cCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhh-ccCCCCCEEEE
Confidence            789999999999998876654 346999999999999999999999998  68999999998864320 1267 999999


Q ss_pred             cCc---ccHHHHHHHH--ccCcccCeEEEEEeCCCc
Q 026122          153 RAV---AEMRILAEYC--LPLVRVGGLFVAAKGHDP  183 (243)
Q Consensus       153 ~~~---~~~~~~l~~~--~~~LkpgG~l~~~~~~~~  183 (243)
                      +..   .....+++.+  .++|+|||.+++......
T Consensus       132 ~~~~~~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~~  167 (201)
T 2ift_A          132 DPPFHFNLAEQAISLLCENNWLKPNALIYVETEKDK  167 (201)
T ss_dssp             CCCSSSCHHHHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred             CCCCCCccHHHHHHHHHhcCccCCCcEEEEEECCCC
Confidence            753   3567888888  778999999998775443

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.67  E-value=7.7e-16  Score=130.65  Aligned_cols=125  Identities=18%  Similarity=0.180  Sum_probs=103.0

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCEEEEEccccccccCCcCCCCceEEE
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIA-CPDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      .++.+|||+|||+|.+++.++.. .|+.+|+++|+|+.+++.++++.+.+++ .+++++++|+.+.. .   .++||+|+
T Consensus       111 ~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~---~~~~D~V~  186 (277)
T 1o54_A          111 KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGF-D---EKDVDALF  186 (277)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCC-S---CCSEEEEE
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcc-c---CCccCEEE
Confidence            45789999999999999999988 5678999999999999999999999988 57999999998862 2   25799999


Q ss_pred             EcCcccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEE
Q 026122          152 ARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLC  205 (243)
Q Consensus       152 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~  205 (243)
                      ++. .+...+++.+.+.|+|||.+++.....  ..+.++.+.+++.||...+..
T Consensus       187 ~~~-~~~~~~l~~~~~~L~pgG~l~~~~~~~--~~~~~~~~~l~~~gf~~~~~~  237 (277)
T 1o54_A          187 LDV-PDPWNYIDKCWEALKGGGRFATVCPTT--NQVQETLKKLQELPFIRIEVW  237 (277)
T ss_dssp             ECC-SCGGGTHHHHHHHEEEEEEEEEEESSH--HHHHHHHHHHHHSSEEEEEEE
T ss_pred             ECC-cCHHHHHHHHHHHcCCCCEEEEEeCCH--HHHHHHHHHHHHCCCceeEEE
Confidence            964 445678899999999999999887642  345566677778998766544

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.67  E-value=6.5e-16  Score=123.79  Aligned_cols=98  Identities=21%  Similarity=0.220  Sum_probs=86.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  155 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~  155 (243)
                      +.+|||+|||+|..+..++..  +.+|+|+|+|+.+++.++++.+..++.+++++++|+.+.+.    .++||+|+++..
T Consensus        33 ~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~----~~~~D~v~~~~~  106 (199)
T 2xvm_A           33 PGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF----DRQYDFILSTVV  106 (199)
T ss_dssp             SCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC----CCCEEEEEEESC
T ss_pred             CCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC----CCCceEEEEcch
Confidence            679999999999999888876  57999999999999999999998888789999999998764    278999999752


Q ss_pred             ----c--cHHHHHHHHccCcccCeEEEEEe
Q 026122          156 ----A--EMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       156 ----~--~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                          .  +...+++.+.++|+|||.+++..
T Consensus       107 l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  136 (199)
T 2xvm_A          107 LMFLEAKTIPGLIANMQRCTKPGGYNLIVA  136 (199)
T ss_dssp             GGGSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence                2  67899999999999999987764

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.67  E-value=2.8e-15  Score=122.99  Aligned_cols=120  Identities=16%  Similarity=0.190  Sum_probs=89.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCc---CCCCceEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVS---FREQYDVA  150 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~---~~~~fD~I  150 (243)
                      +.+|||||||+|..++.+|+..+ +++|+++|+++.+++.++++++..++. +++++++|+.+......   ..++||+|
T Consensus        59 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~V  138 (221)
T 3u81_A           59 PSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMV  138 (221)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSEE
T ss_pred             CCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEEE
Confidence            78999999999999999998654 789999999999999999999999986 49999999876432110   01579999


Q ss_pred             EEcCc-cc---HHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhC
Q 026122          151 VARAV-AE---MRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMG  198 (243)
Q Consensus       151 ~~~~~-~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g  198 (243)
                      ++... ..   ...+++.+ ++|+|||.+++......  ...++.+.++...
T Consensus       139 ~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~~~~~~~--~~~~~~~~l~~~~  187 (221)
T 3u81_A          139 FLDHWKDRYLPDTLLLEKC-GLLRKGTVLLADNVIVP--GTPDFLAYVRGSS  187 (221)
T ss_dssp             EECSCGGGHHHHHHHHHHT-TCCCTTCEEEESCCCCC--CCHHHHHHHHHCT
T ss_pred             EEcCCcccchHHHHHHHhc-cccCCCeEEEEeCCCCc--chHHHHHHHhhCC
Confidence            99763 22   33566666 99999999887543222  1234444554543

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.67  E-value=1.1e-15  Score=127.48  Aligned_cols=123  Identities=15%  Similarity=0.118  Sum_probs=94.4

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc--------CCCCEEEEEccccc-cccCCcCC
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT--------QLLNVQIVRGRAET-LGKDVSFR  144 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~--------~~~~v~~~~~d~~~-~~~~~~~~  144 (243)
                      +++.+|||||||+|..++.+|...|+.+|+|||+|+.+++.++++++.+        ++.|++++++|+.+ ++.. ...
T Consensus        48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~-~~~  126 (246)
T 2vdv_E           48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNF-FEK  126 (246)
T ss_dssp             SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGT-SCT
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHh-ccc
Confidence            3477999999999999999999988889999999999999999998876        77789999999987 3311 112


Q ss_pred             CCceEEEEcCcccH------------HHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCC
Q 026122          145 EQYDVAVARAVAEM------------RILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGA  199 (243)
Q Consensus       145 ~~fD~I~~~~~~~~------------~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~  199 (243)
                      +++|.|+.......            ..+++.+.++|+|||.+++.....  .-...+.+.+...+.
T Consensus       127 ~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~~--~~~~~~~~~~~~~~~  191 (246)
T 2vdv_E          127 GQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDVK--DLHEWMVKHLEEHPL  191 (246)
T ss_dssp             TCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEESCH--HHHHHHHHHHHHSTT
T ss_pred             cccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEeccH--HHHHHHHHHHHhCcC
Confidence            67999987532221            589999999999999999866532  222233445556653

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.67  E-value=1.4e-15  Score=125.00  Aligned_cols=104  Identities=15%  Similarity=0.094  Sum_probs=83.2

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEE
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      .++.+|||+|||+|..+..++... ++.+|+|+|+|+.+++.++++++..  .+++++++|+.+........++||+|++
T Consensus        72 ~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~D~v~~  149 (227)
T 1g8a_A           72 KPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER--RNIVPILGDATKPEEYRALVPKVDVIFE  149 (227)
T ss_dssp             CTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC--TTEEEEECCTTCGGGGTTTCCCEEEEEE
T ss_pred             CCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc--CCCEEEEccCCCcchhhcccCCceEEEE
Confidence            447899999999999999999774 5689999999999999999888765  5799999999874311111358999999


Q ss_pred             cCcc-c-HHHHHHHHccCcccCeEEEEEe
Q 026122          153 RAVA-E-MRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       153 ~~~~-~-~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      +... + ...+++.+.+.|||||.+++..
T Consensus       150 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  178 (227)
T 1g8a_A          150 DVAQPTQAKILIDNAEVYLKRGGYGMIAV  178 (227)
T ss_dssp             CCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCHhHHHHHHHHHHHhcCCCCEEEEEE
Confidence            7643 2 2355999999999999988864

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.67  E-value=1e-15  Score=133.63  Aligned_cols=135  Identities=13%  Similarity=0.130  Sum_probs=100.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC--EEEEEccccccccCC-cCCCCceEEEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN--VQIVRGRAETLGKDV-SFREQYDVAVA  152 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~--v~~~~~d~~~~~~~~-~~~~~fD~I~~  152 (243)
                      +.+|||+|||+|..++.++..  +.+|++||+|+.+++.++++++.+++.+  ++++++|+.++.... ...++||+|++
T Consensus       154 ~~~VLDlgcGtG~~sl~la~~--ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~  231 (332)
T 2igt_A          154 PLKVLNLFGYTGVASLVAAAA--GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILT  231 (332)
T ss_dssp             CCEEEEETCTTCHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEE
T ss_pred             CCcEEEcccccCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEEE
Confidence            679999999999999988874  4599999999999999999999999864  999999998864210 00258999999


Q ss_pred             cCc--------------ccHHHHHHHHccCcccCeEEEEEeCCCc---HHHHHHHH-HHHHHhCCeeeEEEEEecCCCC
Q 026122          153 RAV--------------AEMRILAEYCLPLVRVGGLFVAAKGHDP---QEEVKNSE-RAVQLMGASLLQLCSVESQSPF  213 (243)
Q Consensus       153 ~~~--------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~---~~~~~~~~-~~l~~~g~~~~~~~~~~~~~~~  213 (243)
                      +..              .++..+++.+.++|+|||.+++......   ...+.++. +.+.+.|+.+. ...+.++...
T Consensus       232 dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~l~~a~~~~g~~v~-~~e~~~p~~~  309 (332)
T 2igt_A          232 DPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRETMRGAGGVVA-SGELVIREAG  309 (332)
T ss_dssp             CCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHHTTTSCSEEE-EEEEEEECCC
T ss_pred             CCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCCCCCHHHHHHHHHHHHHHcCCeEE-EEEEecccCC
Confidence            531              1467899999999999999777664332   33333333 34457788765 4555555444

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.67  E-value=3.3e-16  Score=129.01  Aligned_cols=117  Identities=8%  Similarity=0.044  Sum_probs=92.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcccc-ccccCCcCCCCceEEEEcC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAE-TLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~-~~~~~~~~~~~fD~I~~~~  154 (243)
                      +.+|||+|||+|..+..++..  +.+|+|+|+|+.+++.++++     ..+++++++|+. .++..  .+++||+|+++ 
T Consensus        49 ~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~d~~~~~~~~--~~~~fD~v~~~-  118 (226)
T 3m33_A           49 QTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARAN-----APHADVYEWNGKGELPAG--LGAPFGLIVSR-  118 (226)
T ss_dssp             TCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHH-----CTTSEEEECCSCSSCCTT--CCCCEEEEEEE-
T ss_pred             CCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHh-----CCCceEEEcchhhccCCc--CCCCEEEEEeC-
Confidence            789999999999999888876  57999999999999999887     346999999995 44432  12789999998 


Q ss_pred             cccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEE
Q 026122          155 VAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCS  206 (243)
Q Consensus       155 ~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~  206 (243)
                       .+...+++.+.++|||||.++...+.....   ++.+.+..+||....+..
T Consensus       119 -~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~---~~~~~l~~~Gf~~~~~~~  166 (226)
T 3m33_A          119 -RGPTSVILRLPELAAPDAHFLYVGPRLNVP---EVPERLAAVGWDIVAEDH  166 (226)
T ss_dssp             -SCCSGGGGGHHHHEEEEEEEEEEESSSCCT---HHHHHHHHTTCEEEEEEE
T ss_pred             -CCHHHHHHHHHHHcCCCcEEEEeCCcCCHH---HHHHHHHHCCCeEEEEEe
Confidence             466788889999999999998544443333   345667799998877654

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.67  E-value=1e-15  Score=130.23  Aligned_cols=102  Identities=15%  Similarity=0.085  Sum_probs=85.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCEEEEEccccccccCCcCCCCceEEEEc
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      ++.+|||||||+|..+..++.. +..+|+|+|+|+.+++.++++....+. .+++++++|+.+.+...  .++||+|++.
T Consensus        64 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~--~~~fD~v~~~  140 (298)
T 1ri5_A           64 RGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDL--GKEFDVISSQ  140 (298)
T ss_dssp             TTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCC--SSCEEEEEEE
T ss_pred             CCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCC--CCCcCEEEEC
Confidence            3789999999999998888766 456999999999999999999988877 35999999999875421  2789999986


Q ss_pred             Cc--------ccHHHHHHHHccCcccCeEEEEEe
Q 026122          154 AV--------AEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       154 ~~--------~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      ..        .+...+++.+.++|+|||.+++..
T Consensus       141 ~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  174 (298)
T 1ri5_A          141 FSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTV  174 (298)
T ss_dssp             SCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             chhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            42        346889999999999999998765

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.67  E-value=5.9e-16  Score=128.40  Aligned_cols=122  Identities=11%  Similarity=0.112  Sum_probs=95.4

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcccccc--ccCCcCCCCceEEE
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETL--GKDVSFREQYDVAV  151 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~fD~I~  151 (243)
                      +++.+|||||||+|..+..++..  +.+|+|+|+|+.+++.++++        ++++++|+.+.  +..   +++||+|+
T Consensus        40 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~--------~~~~~~d~~~~~~~~~---~~~fD~i~  106 (240)
T 3dli_A           40 KGCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGK--------FNVVKSDAIEYLKSLP---DKYLDGVM  106 (240)
T ss_dssp             TTCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTT--------SEEECSCHHHHHHTSC---TTCBSEEE
T ss_pred             cCCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhh--------cceeeccHHHHhhhcC---CCCeeEEE
Confidence            34789999999999999888876  56899999999999888765        68899998875  322   27899999


Q ss_pred             EcC----cc--cHHHHHHHHccCcccCeEEEEEeCC-CcHH---------------HHHHHHHHHHHhCCeeeEEEEEe
Q 026122          152 ARA----VA--EMRILAEYCLPLVRVGGLFVAAKGH-DPQE---------------EVKNSERAVQLMGASLLQLCSVE  208 (243)
Q Consensus       152 ~~~----~~--~~~~~l~~~~~~LkpgG~l~~~~~~-~~~~---------------~~~~~~~~l~~~g~~~~~~~~~~  208 (243)
                      +..    +.  ++..+++++.++|||||.+++.... ....               ...++.+.++++||.+++...+.
T Consensus       107 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~  185 (240)
T 3dli_A          107 ISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFILEYLGFRDVKIEFFE  185 (240)
T ss_dssp             EESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHHTTSTTCCSCCCHHHHHHHHHHHTCEEEEEEEEC
T ss_pred             ECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHHhcCccccccCCHHHHHHHHHHCCCeEEEEEEec
Confidence            965    22  5689999999999999999987632 2111               12456777889999988876644

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.66  E-value=1.2e-15  Score=124.00  Aligned_cols=101  Identities=16%  Similarity=0.163  Sum_probs=87.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEEEc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      +.+|||||||+|..++.++...+ +.+|+++|+|+.+++.++++++..++. +++++++|+.+....  .++ ||+|+++
T Consensus        57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~-fD~v~~~  133 (210)
T 3c3p_A           57 PQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAG--QRD-IDILFMD  133 (210)
T ss_dssp             CSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTT--CCS-EEEEEEE
T ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhcc--CCC-CCEEEEc
Confidence            67999999999999999998776 789999999999999999999988875 499999999875321  126 9999987


Q ss_pred             C-cccHHHHHHHHccCcccCeEEEEEe
Q 026122          154 A-VAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       154 ~-~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      . ......+++.+.++|+|||.+++..
T Consensus       134 ~~~~~~~~~l~~~~~~LkpgG~lv~~~  160 (210)
T 3c3p_A          134 CDVFNGADVLERMNRCLAKNALLIAVN  160 (210)
T ss_dssp             TTTSCHHHHHHHHGGGEEEEEEEEEES
T ss_pred             CChhhhHHHHHHHHHhcCCCeEEEEEC
Confidence            6 4578999999999999999988744

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.66  E-value=4.2e-15  Score=131.05  Aligned_cols=146  Identities=16%  Similarity=0.106  Sum_probs=109.0

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEEE
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      +++.+|||||||+|..+..++..+|+.+++++|+ +.+++.++++....++. +++++.+|+.+ ...    ..||+|++
T Consensus       181 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~----~~~D~v~~  254 (374)
T 1qzz_A          181 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLP----VTADVVLL  254 (374)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCS----CCEEEEEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-cCC----CCCCEEEE
Confidence            4578999999999999999999998899999999 99999999999988886 69999999976 221    45999999


Q ss_pred             cCcc----c--HHHHHHHHccCcccCeEEEEEeC--C--CcH--------------------HHHHHHHHHHHHhCCeee
Q 026122          153 RAVA----E--MRILAEYCLPLVRVGGLFVAAKG--H--DPQ--------------------EEVKNSERAVQLMGASLL  202 (243)
Q Consensus       153 ~~~~----~--~~~~l~~~~~~LkpgG~l~~~~~--~--~~~--------------------~~~~~~~~~l~~~g~~~~  202 (243)
                      +.+.    +  ...+++++.+.|+|||++++...  .  ...                    ....++.+.++++||.++
T Consensus       255 ~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~~  334 (374)
T 1qzz_A          255 SFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALA  334 (374)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEEE
T ss_pred             eccccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCcCCCHHHHHHHHHHCCCceE
Confidence            7532    2  24899999999999999887654  2  110                    023456677889999988


Q ss_pred             EEEEEecCCCCCceEEEEEEeeC
Q 026122          203 QLCSVESQSPFGQRTAVVCLKSR  225 (243)
Q Consensus       203 ~~~~~~~~~~~~~r~~v~~~k~~  225 (243)
                      ++........+....++.+.+..
T Consensus       335 ~~~~~~~~~~~~~~~~i~~~~~~  357 (374)
T 1qzz_A          335 SERTSGSTTLPFDFSILEFTAVS  357 (374)
T ss_dssp             EEEEECCSSCSSCEEEEEEEECC
T ss_pred             EEEECCCCcccCCcEEEEEEECc
Confidence            87654311111122566666543

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.66  E-value=1e-15  Score=125.59  Aligned_cols=104  Identities=22%  Similarity=0.282  Sum_probs=88.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccccccCCcC---CCCceEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSF---REQYDVA  150 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~---~~~fD~I  150 (243)
                      +.+|||||||+|..++.++...+ +.+|+++|+++.+++.++++++..++.+ ++++++|+.+.......   .++||+|
T Consensus        65 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v  144 (225)
T 3tr6_A           65 AKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLI  144 (225)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEE
T ss_pred             CCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccEE
Confidence            77999999999999999998776 7899999999999999999999999865 99999999765321100   1579999


Q ss_pred             EEcCc-ccHHHHHHHHccCcccCeEEEEEe
Q 026122          151 VARAV-AEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       151 ~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      ++... ..+..+++.+.++|+|||.+++..
T Consensus       145 ~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~  174 (225)
T 3tr6_A          145 YIDADKANTDLYYEESLKLLREGGLIAVDN  174 (225)
T ss_dssp             EECSCGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EECCCHHHHHHHHHHHHHhcCCCcEEEEeC
Confidence            98764 458899999999999999988754

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.66  E-value=5e-16  Score=122.79  Aligned_cols=103  Identities=13%  Similarity=0.114  Sum_probs=85.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      +.+|||+|||+|..++.++.. +..+|+|+|+|+.+++.++++++..++. +++++++|+.+....  ..++||+|+++.
T Consensus        32 ~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~fD~i~~~~  108 (177)
T 2esr_A           32 GGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDC--LTGRFDLVFLDP  108 (177)
T ss_dssp             SCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHH--BCSCEEEEEECC
T ss_pred             CCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHh--hcCCCCEEEECC
Confidence            789999999999999888866 5679999999999999999999999885 699999999884221  125799999975


Q ss_pred             c---ccHHHHHHHHc--cCcccCeEEEEEeCC
Q 026122          155 V---AEMRILAEYCL--PLVRVGGLFVAAKGH  181 (243)
Q Consensus       155 ~---~~~~~~l~~~~--~~LkpgG~l~~~~~~  181 (243)
                      .   .....+++.+.  ++|+|||.+++....
T Consensus       109 ~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~  140 (177)
T 2esr_A          109 PYAKETIVATIEALAAKNLLSEQVMVVCETDK  140 (177)
T ss_dssp             SSHHHHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             CCCcchHHHHHHHHHhCCCcCCCcEEEEEECC
Confidence            3   34567777776  999999999987754

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.66  E-value=1.7e-16  Score=131.50  Aligned_cols=121  Identities=13%  Similarity=0.101  Sum_probs=91.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcccccc--ccCCcCCCCceEEEEc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETL--GKDVSFREQYDVAVAR  153 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~fD~I~~~  153 (243)
                      +.+|||||||+|..+..++.. +..+|+|+|+|+.+++.|+++.+..+ .+++++++|+.++  +..   +++||+|+++
T Consensus        61 ~~~vLDiGcGtG~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~---~~~fD~V~~d  135 (236)
T 1zx0_A           61 GGRVLEVGFGMAIAASKVQEA-PIDEHWIIECNDGVFQRLRDWAPRQT-HKVIPLKGLWEDVAPTLP---DGHFDGILYD  135 (236)
T ss_dssp             CEEEEEECCTTSHHHHHHHTS-CEEEEEEEECCHHHHHHHHHHGGGCS-SEEEEEESCHHHHGGGSC---TTCEEEEEEC
T ss_pred             CCeEEEEeccCCHHHHHHHhc-CCCeEEEEcCCHHHHHHHHHHHHhcC-CCeEEEecCHHHhhcccC---CCceEEEEEC
Confidence            789999999999999888754 33599999999999999999887766 4699999999987  443   2689999992


Q ss_pred             -C--------cccHHHHHHHHccCcccCeEEEEEeCCCc----------HHH--HHHHHHHHHHhCCee
Q 026122          154 -A--------VAEMRILAEYCLPLVRVGGLFVAAKGHDP----------QEE--VKNSERAVQLMGASL  201 (243)
Q Consensus       154 -~--------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~----------~~~--~~~~~~~l~~~g~~~  201 (243)
                       .        ......+++++.++|||||++++......          ...  .......+.++||..
T Consensus       136 ~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~  204 (236)
T 1zx0_A          136 TYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITIMFEETQVPALLEAGFRR  204 (236)
T ss_dssp             CCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSCHHHHHHHHTHHHHHHTTCCG
T ss_pred             CcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEecCcHHHhhchhhhhhhhhccHHHHHHHHHCCCCC
Confidence             1        11345779999999999999887542110          000  123345678899975

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.66  E-value=1.7e-15  Score=126.43  Aligned_cols=95  Identities=18%  Similarity=0.141  Sum_probs=83.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~-  154 (243)
                      +.+|||+|||+|..+..++...|+.+|+|+|+|+.+++.++++     ..+++++++|+.+++ .   +++||+|+++. 
T Consensus        34 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~-----~~~~~~~~~d~~~~~-~---~~~fD~v~~~~~  104 (259)
T 2p35_A           34 VLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADR-----LPNTNFGKADLATWK-P---AQKADLLYANAV  104 (259)
T ss_dssp             CSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHH-----STTSEEEECCTTTCC-C---SSCEEEEEEESC
T ss_pred             CCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh-----CCCcEEEECChhhcC-c---cCCcCEEEEeCc
Confidence            7899999999999999999887888999999999999998876     346899999999876 3   27899999975 


Q ss_pred             ---cccHHHHHHHHccCcccCeEEEEEe
Q 026122          155 ---VAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       155 ---~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                         ..+...+++++.++|+|||.+++..
T Consensus       105 l~~~~~~~~~l~~~~~~L~pgG~l~~~~  132 (259)
T 2p35_A          105 FQWVPDHLAVLSQLMDQLESGGVLAVQM  132 (259)
T ss_dssp             GGGSTTHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             hhhCCCHHHHHHHHHHhcCCCeEEEEEe
Confidence               3478999999999999999999876

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.66  E-value=1e-15  Score=132.71  Aligned_cols=129  Identities=19%  Similarity=0.145  Sum_probs=100.9

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEE
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      +.++.+|||+|||+|..+..++...+ +++|+|+|+|+.+++.++++++++++.+++++++|+.++...   .++||+|+
T Consensus       116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~---~~~fD~Il  192 (315)
T 1ixk_A          116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGEL---NVEFDKIL  192 (315)
T ss_dssp             CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGG---CCCEEEEE
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccc---cccCCEEE
Confidence            45688999999999999999998764 589999999999999999999999998899999999887542   26899999


Q ss_pred             EcCc----------c----------------cHHHHHHHHccCcccCeEEEEEeCCCcHHH-HHHHHHHHHHhCCeeeEE
Q 026122          152 ARAV----------A----------------EMRILAEYCLPLVRVGGLFVAAKGHDPQEE-VKNSERAVQLMGASLLQL  204 (243)
Q Consensus       152 ~~~~----------~----------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~-~~~~~~~l~~~g~~~~~~  204 (243)
                      ++..          .                ....+++.+.++|||||++++.......++ -..+...+++.|+..+.+
T Consensus       193 ~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~Ene~~v~~~l~~~~~~~~~~  272 (315)
T 1ixk_A          193 LDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNFDVELLPL  272 (315)
T ss_dssp             EECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSEEEECC
T ss_pred             EeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHhHHHHHHHHhcCCCEEecC
Confidence            8531          0                025889999999999999998775433222 222344566778765543

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.66  E-value=2.8e-15  Score=127.00  Aligned_cols=125  Identities=16%  Similarity=0.091  Sum_probs=100.2

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHc-C--CCCEEEEEccccccccCCcCCCCceE
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIA-CPDWKVTLLESMNKRCVFLEHAVSLT-Q--LLNVQIVRGRAETLGKDVSFREQYDV  149 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~-~~~~~v~~vD~s~~~~~~a~~~~~~~-~--~~~v~~~~~d~~~~~~~~~~~~~fD~  149 (243)
                      .++.+|||+|||+|.++..++.. .|+.+|+++|+++.+++.++++.+.. +  ..+++++++|+.+....   .++||+
T Consensus        98 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~~---~~~~D~  174 (280)
T 1i9g_A           98 FPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELP---DGSVDR  174 (280)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCC---TTCEEE
T ss_pred             CCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCCC---CCceeE
Confidence            44789999999999999999975 46789999999999999999999887 6  56799999999887543   268999


Q ss_pred             EEEcCcccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHH-hCCeeeEE
Q 026122          150 AVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQL-MGASLLQL  204 (243)
Q Consensus       150 I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~  204 (243)
                      |+++. .+...+++.+.+.|+|||.+++....  .+.+.++.+.++. .+|...+.
T Consensus       175 v~~~~-~~~~~~l~~~~~~L~pgG~l~~~~~~--~~~~~~~~~~l~~~~~f~~~~~  227 (280)
T 1i9g_A          175 AVLDM-LAPWEVLDAVSRLLVAGGVLMVYVAT--VTQLSRIVEALRAKQCWTEPRA  227 (280)
T ss_dssp             EEEES-SCGGGGHHHHHHHEEEEEEEEEEESS--HHHHHHHHHHHHHHSSBCCCEE
T ss_pred             EEECC-cCHHHHHHHHHHhCCCCCEEEEEeCC--HHHHHHHHHHHHhcCCcCCcEE
Confidence            99954 35568889999999999999987754  2445566666666 67765443

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.66  E-value=2.5e-16  Score=131.52  Aligned_cols=104  Identities=19%  Similarity=0.171  Sum_probs=88.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCc---CCCCceEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVS---FREQYDVA  150 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~---~~~~fD~I  150 (243)
                      +.+|||||||+|..++.+|...+ +++|+++|+++++++.|+++++..++. +++++++|+.+......   ..++||+|
T Consensus        61 ~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~V  140 (242)
T 3r3h_A           61 AKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFI  140 (242)
T ss_dssp             CSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEEE
T ss_pred             cCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeEE
Confidence            67999999999999999998775 789999999999999999999999986 69999999977532100   02689999


Q ss_pred             EEcCc-ccHHHHHHHHccCcccCeEEEEEe
Q 026122          151 VARAV-AEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       151 ~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      ++.+. ..+..+++.+.++|+|||.+++..
T Consensus       141 ~~d~~~~~~~~~l~~~~~~LkpGG~lv~d~  170 (242)
T 3r3h_A          141 FIDADKTNYLNYYELALKLVTPKGLIAIDN  170 (242)
T ss_dssp             EEESCGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EEcCChHHhHHHHHHHHHhcCCCeEEEEEC
Confidence            99764 468889999999999999988743

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.65  E-value=4.3e-15  Score=127.66  Aligned_cols=146  Identities=12%  Similarity=0.040  Sum_probs=106.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH--cC--CCCEEEEEccccccccCCcCCCCceEEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSL--TQ--LLNVQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~--~~~v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      +.+|||||||+|..+..+++..+..+|++||+|+.+++.++++...  .+  ..+++++++|+.+.....  .++||+|+
T Consensus        91 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~--~~~fD~Ii  168 (296)
T 1inl_A           91 PKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKF--KNEFDVII  168 (296)
T ss_dssp             CCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGC--SSCEEEEE
T ss_pred             CCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhC--CCCceEEE
Confidence            6799999999999998888765678999999999999999998754  22  356999999987753211  26899999


Q ss_pred             EcCccc---------HHHHHHHHccCcccCeEEEEEeCC--CcHHHHHHHHHHHHHhCCeeeEEEEEecCCCCCc-eEEE
Q 026122          152 ARAVAE---------MRILAEYCLPLVRVGGLFVAAKGH--DPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQ-RTAV  219 (243)
Q Consensus       152 ~~~~~~---------~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~-r~~v  219 (243)
                      ++....         ..++++.+.+.|+|||.+++..+.  ...+....+.+.+++. |..+.......+..++. -..+
T Consensus       169 ~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~v~~~~~~vp~~p~g~~~f~  247 (296)
T 1inl_A          169 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKV-FPITRVYLGFMTTYPSGMWSYT  247 (296)
T ss_dssp             EEC----------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHH-CSEEEEEEEECTTSTTSEEEEE
T ss_pred             EcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccCcccCHHHHHHHHHHHHHH-CCceEEEEeecCccCCCceEEE
Confidence            865322         268899999999999999987643  3355667777777776 55555555555544333 3344


Q ss_pred             EEEee
Q 026122          220 VCLKS  224 (243)
Q Consensus       220 ~~~k~  224 (243)
                      ++.|.
T Consensus       248 ~as~~  252 (296)
T 1inl_A          248 FASKG  252 (296)
T ss_dssp             EEESS
T ss_pred             EecCC
Confidence            44443

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.65  E-value=1.1e-15  Score=130.82  Aligned_cols=102  Identities=17%  Similarity=0.097  Sum_probs=86.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHc-C-CCCEEEEEccccccccCC---cCCCCceE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLT-Q-LLNVQIVRGRAETLGKDV---SFREQYDV  149 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~-~-~~~v~~~~~d~~~~~~~~---~~~~~fD~  149 (243)
                      +.+|||||||+|..+..++... ++.+|+|+|+|+.+++.++++++.. + ..+++++++|+++++...   ...++||+
T Consensus        37 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~  116 (299)
T 3g5t_A           37 RKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKIDM  116 (299)
T ss_dssp             CSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCEEE
T ss_pred             CCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCeeE
Confidence            7899999999999999999875 7899999999999999999999886 2 357999999999876431   00158999


Q ss_pred             EEEcCc---ccHHHHHHHHccCcccCeEEEE
Q 026122          150 AVARAV---AEMRILAEYCLPLVRVGGLFVA  177 (243)
Q Consensus       150 I~~~~~---~~~~~~l~~~~~~LkpgG~l~~  177 (243)
                      |+++..   .++..+++++.++|+|||.+++
T Consensus       117 V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~i  147 (299)
T 3g5t_A          117 ITAVECAHWFDFEKFQRSAYANLRKDGTIAI  147 (299)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHEEEEEEEEE
T ss_pred             EeHhhHHHHhCHHHHHHHHHHhcCCCcEEEE
Confidence            999652   1889999999999999999987

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.65  E-value=3.3e-16  Score=131.73  Aligned_cols=122  Identities=15%  Similarity=0.036  Sum_probs=95.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~-  154 (243)
                      +.+|||||||+|..+..++.  ++.+|+|+|+|+.+++.++++.      +++++++|+++++...   ++||+|+++. 
T Consensus        35 ~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~------~~~~~~~d~~~~~~~~---~~fD~v~~~~~  103 (261)
T 3ege_A           35 GSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVHP------QVEWFTGYAENLALPD---KSVDGVISILA  103 (261)
T ss_dssp             TCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCCT------TEEEECCCTTSCCSCT---TCBSEEEEESC
T ss_pred             CCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhcc------CCEEEECchhhCCCCC---CCEeEEEEcch
Confidence            78999999999999988885  6789999999999888765543      6999999999876542   7899999975 


Q ss_pred             ---cccHHHHHHHHccCcccCeEEEEEeCC-C------c--------------HHHHHHHHHHHHHhCCeeeEEEEEecC
Q 026122          155 ---VAEMRILAEYCLPLVRVGGLFVAAKGH-D------P--------------QEEVKNSERAVQLMGASLLQLCSVESQ  210 (243)
Q Consensus       155 ---~~~~~~~l~~~~~~LkpgG~l~~~~~~-~------~--------------~~~~~~~~~~l~~~g~~~~~~~~~~~~  210 (243)
                         +.++..+++++.++|| ||++++.... .      .              .....++. .++++||..+....+..+
T Consensus       104 l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~aGF~~v~~~~~~~p  181 (261)
T 3ege_A          104 IHHFSHLEKSFQEMQRIIR-DGTIVLLTFDIRLAQRIWLYDYFPFLWEDALRFLPLDEQIN-LLQENTKRRVEAIPFLLP  181 (261)
T ss_dssp             GGGCSSHHHHHHHHHHHBC-SSCEEEEEECGGGCCCCGGGGTCHHHHHHHHTSCCHHHHHH-HHHHHHCSEEEEEECCEE
T ss_pred             HhhccCHHHHHHHHHHHhC-CcEEEEEEcCCchhHHHHHHHHHHHHhhhhhhhCCCHHHHH-HHHHcCCCceeEEEecCC
Confidence               3578999999999999 9977766521 0      0              00123455 888999988887765543

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.65  E-value=3.7e-15  Score=131.04  Aligned_cols=127  Identities=13%  Similarity=0.164  Sum_probs=103.0

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccccccCCcCCCCceEEEE
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      +++.+|||||||+|..+..++..+|+.+++++|+ +.+++.++++++..++.+ ++++.+|+.+.+.     ..+|+|++
T Consensus       189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----~~~D~v~~  262 (359)
T 1x19_A          189 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY-----PEADAVLF  262 (359)
T ss_dssp             TTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCC-----CCCSEEEE
T ss_pred             CCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCC-----CCCCEEEE
Confidence            4478999999999999999999999999999999 999999999999888865 9999999988643     23599998


Q ss_pred             cCc----cc--HHHHHHHHccCcccCeEEEEEeCC---------------------CcH----HHHHHHHHHHHHhCCee
Q 026122          153 RAV----AE--MRILAEYCLPLVRVGGLFVAAKGH---------------------DPQ----EEVKNSERAVQLMGASL  201 (243)
Q Consensus       153 ~~~----~~--~~~~l~~~~~~LkpgG~l~~~~~~---------------------~~~----~~~~~~~~~l~~~g~~~  201 (243)
                      ..+    .+  ...+++++.+.|+|||++++....                     ...    ....++.+.++++||+.
T Consensus       263 ~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~t~~e~~~ll~~aGf~~  342 (359)
T 1x19_A          263 CRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESLGYKD  342 (359)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCTTSCCHHHHHHHGGGGGSSCCCCCCCCGGGHHHHHHHHTCEE
T ss_pred             echhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCCCCchHHHHHHHHHhcCCCCcccCCCCHHHHHHHHHHCCCce
Confidence            652    23  688999999999999999876511                     000    23345677788999998


Q ss_pred             eEEEE
Q 026122          202 LQLCS  206 (243)
Q Consensus       202 ~~~~~  206 (243)
                      +++..
T Consensus       343 v~~~~  347 (359)
T 1x19_A          343 VTMVR  347 (359)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            87765

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.65  E-value=2.1e-15  Score=132.48  Aligned_cols=140  Identities=21%  Similarity=0.117  Sum_probs=108.2

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEE
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      ++++.+|||+|||+|.+++.++... ++.+|+|+|+|+.+++.|++|++..++.++++.++|+.+++...   +.||+|+
T Consensus       201 ~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~---~~~D~Ii  277 (354)
T 3tma_A          201 ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFF---PEVDRIL  277 (354)
T ss_dssp             CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTC---CCCSEEE
T ss_pred             CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCcccc---CCCCEEE
Confidence            3557899999999999999999876 77899999999999999999999999888999999999986542   5699999


Q ss_pred             EcCc--------c----cHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEEEecCCCCCceEEE
Q 026122          152 ARAV--------A----EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAV  219 (243)
Q Consensus       152 ~~~~--------~----~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~v  219 (243)
                      ++..        .    .+..+++.+.+.|+|||.+++..+..  ..   +.+..+ .|++..+...+.  .....+.++
T Consensus       278 ~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~--~~---~~~~~~-~g~~~~~~~~l~--~g~l~~~i~  349 (354)
T 3tma_A          278 ANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLRP--AL---LKRALP-PGFALRHARVVE--QGGVYPRVF  349 (354)
T ss_dssp             ECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCH--HH---HHHHCC-TTEEEEEEEECC--BTTBCCEEE
T ss_pred             ECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCCH--HH---HHHHhh-cCcEEEEEEEEE--eCCEEEEEE
Confidence            9741        1    24788999999999999999987631  11   223333 788776554432  223356666


Q ss_pred             EEEe
Q 026122          220 VCLK  223 (243)
Q Consensus       220 ~~~k  223 (243)
                      +++|
T Consensus       350 vl~r  353 (354)
T 3tma_A          350 VLEK  353 (354)
T ss_dssp             EEEE
T ss_pred             EEEc
Confidence            6665

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.65  E-value=1.1e-15  Score=127.87  Aligned_cols=132  Identities=14%  Similarity=0.102  Sum_probs=98.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----------------------------CC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL-----------------------------LN  126 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-----------------------------~~  126 (243)
                      +.+|||+|||+|..+..++...+ .+|+|+|+|+.+++.++++.+..+.                             .+
T Consensus        57 ~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  135 (265)
T 2i62_A           57 GELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRRA  135 (265)
T ss_dssp             EEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHHH
T ss_pred             CCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhhh
Confidence            67999999999999888776533 4999999999999999888765431                             02


Q ss_pred             E-EEEEccccccccCC-cCCCCceEEEEcCc--------ccHHHHHHHHccCcccCeEEEEEeCCC-------------c
Q 026122          127 V-QIVRGRAETLGKDV-SFREQYDVAVARAV--------AEMRILAEYCLPLVRVGGLFVAAKGHD-------------P  183 (243)
Q Consensus       127 v-~~~~~d~~~~~~~~-~~~~~fD~I~~~~~--------~~~~~~l~~~~~~LkpgG~l~~~~~~~-------------~  183 (243)
                      + +++++|+.+..... ...++||+|++...        .++..+++++.++|||||.+++.....             .
T Consensus       136 v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~  215 (265)
T 2i62_A          136 IKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQKFSSL  215 (265)
T ss_dssp             EEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECC
T ss_pred             heeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcCCcccccc
Confidence            7 89999998864311 11267999999642        257889999999999999998864110             0


Q ss_pred             HHHHHHHHHHHHHhCCeeeEEEEEe
Q 026122          184 QEEVKNSERAVQLMGASLLQLCSVE  208 (243)
Q Consensus       184 ~~~~~~~~~~l~~~g~~~~~~~~~~  208 (243)
                      .-...++.+.++++||.+++.....
T Consensus       216 ~~~~~~~~~~l~~aGf~~~~~~~~~  240 (265)
T 2i62_A          216 PLGWETVRDAVEEAGYTIEQFEVIS  240 (265)
T ss_dssp             CCCHHHHHHHHHHTTCEEEEEEEEC
T ss_pred             ccCHHHHHHHHHHCCCEEEEEEEec
Confidence            1123456677889999998877654

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.65  E-value=1.1e-15  Score=121.43  Aligned_cols=105  Identities=12%  Similarity=0.063  Sum_probs=85.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccC-CcCCCCceEEEEc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKD-VSFREQYDVAVAR  153 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~-~~~~~~fD~I~~~  153 (243)
                      +.+|||+|||+|..++.++. .+..+|+|+|+|+.+++.++++++.+++. +++++++|+.+.... ....++||+|+++
T Consensus        45 ~~~vLD~GcG~G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~  123 (187)
T 2fhp_A           45 GGMALDLYSGSGGLAIEAVS-RGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLD  123 (187)
T ss_dssp             SCEEEETTCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCCEEEeCCccCHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEEC
Confidence            78999999999999988776 45679999999999999999999999874 699999999874321 0002689999997


Q ss_pred             Cc---ccHHHHHHHH--ccCcccCeEEEEEeCC
Q 026122          154 AV---AEMRILAEYC--LPLVRVGGLFVAAKGH  181 (243)
Q Consensus       154 ~~---~~~~~~l~~~--~~~LkpgG~l~~~~~~  181 (243)
                      ..   ......++.+  .++|+|||.+++....
T Consensus       124 ~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~  156 (187)
T 2fhp_A          124 PPYAKQEIVSQLEKMLERQLLTNEAVIVCETDK  156 (187)
T ss_dssp             CCGGGCCHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             CCCCchhHHHHHHHHHHhcccCCCCEEEEEeCC
Confidence            53   3567777777  8999999999987754

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.64  E-value=1.6e-15  Score=125.27  Aligned_cols=125  Identities=19%  Similarity=0.154  Sum_probs=98.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~-  154 (243)
                      +.+|||||||+|..+..++.. +..+|+|+|+|+.+++.++++...   .+++++++|+.+++..   .++||+|++.. 
T Consensus        44 ~~~vLdiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~~~---~~~fD~v~~~~~  116 (243)
T 3bkw_A           44 GLRIVDLGCGFGWFCRWAHEH-GASYVLGLDLSEKMLARARAAGPD---TGITYERADLDKLHLP---QDSFDLAYSSLA  116 (243)
T ss_dssp             TCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTSCS---SSEEEEECCGGGCCCC---TTCEEEEEEESC
T ss_pred             CCEEEEEcCcCCHHHHHHHHC-CCCeEEEEcCCHHHHHHHHHhccc---CCceEEEcChhhccCC---CCCceEEEEecc
Confidence            789999999999999888866 323999999999999988876532   3699999999987643   26899999965 


Q ss_pred             ---cccHHHHHHHHccCcccCeEEEEEeCC-------C-----------------c----------H--------HHHHH
Q 026122          155 ---VAEMRILAEYCLPLVRVGGLFVAAKGH-------D-----------------P----------Q--------EEVKN  189 (243)
Q Consensus       155 ---~~~~~~~l~~~~~~LkpgG~l~~~~~~-------~-----------------~----------~--------~~~~~  189 (243)
                         ..+...+++.+.++|+|||.+++....       .                 .          .        ....+
T Consensus       117 l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~  196 (243)
T 3bkw_A          117 LHYVEDVARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAKGVVKHHRTVGT  196 (243)
T ss_dssp             GGGCSCHHHHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHHSCCEEECCHHH
T ss_pred             ccccchHHHHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeeccCceEEEeccHHH
Confidence               346899999999999999999885410       0                 0          0        13566


Q ss_pred             HHHHHHHhCCeeeEEEEE
Q 026122          190 SERAVQLMGASLLQLCSV  207 (243)
Q Consensus       190 ~~~~l~~~g~~~~~~~~~  207 (243)
                      +.+.++++||.++++...
T Consensus       197 ~~~~l~~aGF~~~~~~~~  214 (243)
T 3bkw_A          197 TLNALIRSGFAIEHVEEF  214 (243)
T ss_dssp             HHHHHHHTTCEEEEEEEC
T ss_pred             HHHHHHHcCCEeeeeccC
Confidence            778889999998887653

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.64  E-value=2.7e-15  Score=117.61  Aligned_cols=132  Identities=9%  Similarity=-0.004  Sum_probs=95.7

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      +++.+|||+|||+|..+..++...  .+|+|+|+|+.+++.++++     ..+++++.+|   .+..   .++||+|+++
T Consensus        16 ~~~~~vLDiG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~-----~~~v~~~~~d---~~~~---~~~~D~v~~~   82 (170)
T 3i9f_A           16 GKKGVIVDYGCGNGFYCKYLLEFA--TKLYCIDINVIALKEVKEK-----FDSVITLSDP---KEIP---DNSVDFILFA   82 (170)
T ss_dssp             SCCEEEEEETCTTCTTHHHHHTTE--EEEEEECSCHHHHHHHHHH-----CTTSEEESSG---GGSC---TTCEEEEEEE
T ss_pred             CCCCeEEEECCCCCHHHHHHHhhc--CeEEEEeCCHHHHHHHHHh-----CCCcEEEeCC---CCCC---CCceEEEEEc
Confidence            347799999999999998888764  3999999999999998887     4478999999   2222   2689999997


Q ss_pred             C----cccHHHHHHHHccCcccCeEEEEEeCCCc----------HHHHHHHHHHHHHhCCeeeEEEEEecCCCCCceEEE
Q 026122          154 A----VAEMRILAEYCLPLVRVGGLFVAAKGHDP----------QEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAV  219 (243)
Q Consensus       154 ~----~~~~~~~l~~~~~~LkpgG~l~~~~~~~~----------~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~v  219 (243)
                      .    ..+...+++++.+.|||||.+++..-...          .-...++.+.++  ||++++....     ......+
T Consensus        83 ~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--Gf~~~~~~~~-----~~~~~~l  155 (170)
T 3i9f_A           83 NSFHDMDDKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS--NFVVEKRFNP-----TPYHFGL  155 (170)
T ss_dssp             SCSTTCSCHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT--TEEEEEEECS-----STTEEEE
T ss_pred             cchhcccCHHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh--CcEEEEccCC-----CCceEEE
Confidence            5    34789999999999999999998752110          001234555555  9987766431     2334455


Q ss_pred             EEEeeC
Q 026122          220 VCLKSR  225 (243)
Q Consensus       220 ~~~k~~  225 (243)
                      ++.+..
T Consensus       156 ~~~~~~  161 (170)
T 3i9f_A          156 VLKRKT  161 (170)
T ss_dssp             EEEECC
T ss_pred             EEecCC
Confidence            555543

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.64  E-value=2e-15  Score=128.31  Aligned_cols=97  Identities=22%  Similarity=0.321  Sum_probs=85.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  155 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~  155 (243)
                      +.+|||+|||+|..+..++..  +.+|+|+|+|+.+++.++++++..++ +++++++|+.+...    .++||+|+++.+
T Consensus       121 ~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~----~~~fD~i~~~~~  193 (286)
T 3m70_A          121 PCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKENL-NISTALYDINAANI----QENYDFIVSTVV  193 (286)
T ss_dssp             SCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCGGGCCC----CSCEEEEEECSS
T ss_pred             CCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcCC-ceEEEEeccccccc----cCCccEEEEccc
Confidence            789999999999999888876  56999999999999999999999888 79999999998765    278999999752


Q ss_pred             ------ccHHHHHHHHccCcccCeEEEEEe
Q 026122          156 ------AEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       156 ------~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                            .....+++.+.++|+|||.+++..
T Consensus       194 ~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  223 (286)
T 3m70_A          194 FMFLNRERVPSIIKNMKEHTNVGGYNLIVA  223 (286)
T ss_dssp             GGGSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence                  346799999999999999977754

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.64  E-value=8.8e-16  Score=124.62  Aligned_cols=101  Identities=19%  Similarity=0.248  Sum_probs=85.0

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      .++.+|||+|||+|..+..++..  +.+|+++|+|+.+++.++++.+.+++.+++++++|+.+....   .++||+|+++
T Consensus        76 ~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~---~~~~D~i~~~  150 (210)
T 3lbf_A           76 TPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQA---RAPFDAIIVT  150 (210)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG---GCCEEEEEES
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCcc---CCCccEEEEc
Confidence            45889999999999999999987  579999999999999999999999988899999999886543   2689999997


Q ss_pred             CcccHHHHHHHHccCcccCeEEEEEeCC
Q 026122          154 AVAEMRILAEYCLPLVRVGGLFVAAKGH  181 (243)
Q Consensus       154 ~~~~~~~~l~~~~~~LkpgG~l~~~~~~  181 (243)
                      ....  .+.+.+.+.|+|||++++..+.
T Consensus       151 ~~~~--~~~~~~~~~L~pgG~lv~~~~~  176 (210)
T 3lbf_A          151 AAPP--EIPTALMTQLDEGGILVLPVGE  176 (210)
T ss_dssp             SBCS--SCCTHHHHTEEEEEEEEEEECS
T ss_pred             cchh--hhhHHHHHhcccCcEEEEEEcC
Confidence            5321  1123578899999999998765

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.64  E-value=4.2e-15  Score=122.53  Aligned_cols=92  Identities=14%  Similarity=0.169  Sum_probs=77.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEE-cC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA-RA  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~-~~  154 (243)
                      +.+|||+|||+|..+..++...+  +|+|+|+|+.+++.++++.     .+++++++|+.+++.    .++||+|++ ..
T Consensus        41 ~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~----~~~~D~v~~~~~  109 (239)
T 3bxo_A           41 ASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRL-----PDATLHQGDMRDFRL----GRKFSAVVSMFS  109 (239)
T ss_dssp             CCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHC-----TTCEEEECCTTTCCC----SSCEEEEEECTT
T ss_pred             CCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhC-----CCCEEEECCHHHccc----CCCCcEEEEcCc
Confidence            78999999999999999988753  9999999999999988763     468999999988754    278999995 32


Q ss_pred             ----c---ccHHHHHHHHccCcccCeEEEEE
Q 026122          155 ----V---AEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       155 ----~---~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                          .   .+...+++.+.++|+|||.+++.
T Consensus       110 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  140 (239)
T 3bxo_A          110 SVGYLKTTEELGAAVASFAEHLEPGGVVVVE  140 (239)
T ss_dssp             GGGGCCSHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred             hHhhcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence                2   35688999999999999999875

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.64  E-value=5.3e-15  Score=126.40  Aligned_cols=128  Identities=13%  Similarity=0.160  Sum_probs=91.3

Q ss_pred             CCeEEEEcCCCChHHHH----HHHHCCCCEE--EEEeCCHHHHHHHHHHHHHc-CCCCE--EEEEccccccccC---CcC
Q 026122           76 NLKLVDVGTGAGLPGLV----LAIACPDWKV--TLLESMNKRCVFLEHAVSLT-QLLNV--QIVRGRAETLGKD---VSF  143 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~----la~~~~~~~v--~~vD~s~~~~~~a~~~~~~~-~~~~v--~~~~~d~~~~~~~---~~~  143 (243)
                      +.+|||||||+|..+..    ++..+++.+|  +|+|+|++|++.+++.++.. ++.++  .+..++++++...   +..
T Consensus        53 ~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  132 (292)
T 2aot_A           53 EIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKE  132 (292)
T ss_dssp             EEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTTC
T ss_pred             CCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccccC
Confidence            67999999999976543    2334466755  99999999999999988764 55555  4456666654310   001


Q ss_pred             CCCceEEEEcC----cccHHHHHHHHccCcccCeEEEEEeC-CCcH--------------------HHHHHHHHHHHHhC
Q 026122          144 REQYDVAVARA----VAEMRILAEYCLPLVRVGGLFVAAKG-HDPQ--------------------EEVKNSERAVQLMG  198 (243)
Q Consensus       144 ~~~fD~I~~~~----~~~~~~~l~~~~~~LkpgG~l~~~~~-~~~~--------------------~~~~~~~~~l~~~g  198 (243)
                      +++||+|+++.    +.++..+++++.++|||||++++... ....                    ....++.+.++++|
T Consensus       133 ~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG  212 (292)
T 2aot_A          133 LQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSDDLTQMLDNLG  212 (292)
T ss_dssp             CCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTTSHHHHHHHHHGGGSCCCTTCCCCCHHHHHHHHHHHT
T ss_pred             CCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEEecCCccHHHHHHHHHHhccCCCcccCCCHHHHHHHHHHCC
Confidence            26899999975    55789999999999999999998642 1110                    11245677788999


Q ss_pred             CeeeE
Q 026122          199 ASLLQ  203 (243)
Q Consensus       199 ~~~~~  203 (243)
                      |.+..
T Consensus       213 f~~~~  217 (292)
T 2aot_A          213 LKYEC  217 (292)
T ss_dssp             CCEEE
T ss_pred             CceEE
Confidence            98765

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.64  E-value=3.2e-15  Score=127.47  Aligned_cols=150  Identities=13%  Similarity=0.031  Sum_probs=103.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc-----------------CC-------------C
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT-----------------QL-------------L  125 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~-----------------~~-------------~  125 (243)
                      +.+|||||||+|..++.++. .++.+|+|+|+|+.|++.++++++..                 +.             .
T Consensus        72 ~~~vLDiGcG~G~~~~l~~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  150 (289)
T 2g72_A           72 GRTLIDIGSGPTVYQLLSAC-SHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRAR  150 (289)
T ss_dssp             CSEEEEETCTTCCGGGTTGG-GGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHH
T ss_pred             CCeEEEECCCcChHHHHhhc-cCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHhh
Confidence            78999999999996544443 34579999999999999998865421                 10             0


Q ss_pred             CEEEEEccccc-cccCC--cCCCCceEEEEcC--------cccHHHHHHHHccCcccCeEEEEEe--CC-----------
Q 026122          126 NVQIVRGRAET-LGKDV--SFREQYDVAVARA--------VAEMRILAEYCLPLVRVGGLFVAAK--GH-----------  181 (243)
Q Consensus       126 ~v~~~~~d~~~-~~~~~--~~~~~fD~I~~~~--------~~~~~~~l~~~~~~LkpgG~l~~~~--~~-----------  181 (243)
                      .++++.+|+.+ .+...  ..+++||+|+++.        ..++..+++++.++|||||++++..  ..           
T Consensus       151 ~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~~~~~~  230 (289)
T 2g72_A          151 VKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLT  230 (289)
T ss_dssp             EEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEEE
T ss_pred             hceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEcCCeeee
Confidence            15677889887 43211  1125699999975        2257899999999999999998753  10           


Q ss_pred             CcHHHHHHHHHHHHHhCCeeeEEEEEec----CC--CCCceEEEEEEeeCC
Q 026122          182 DPQEEVKNSERAVQLMGASLLQLCSVES----QS--PFGQRTAVVCLKSRR  226 (243)
Q Consensus       182 ~~~~~~~~~~~~l~~~g~~~~~~~~~~~----~~--~~~~r~~v~~~k~~~  226 (243)
                      ...-...++.+.++++||.++....+..    ..  .+-++.+.+++|+..
T Consensus       231 ~~~~~~~~l~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (289)
T 2g72_A          231 VVPVSEEEVREALVRSGYKVRDLRTYIMPAHLQTGVDDVKGVFFAWAQKVG  281 (289)
T ss_dssp             CCCCCHHHHHHHHHHTTEEEEEEEEEECCGGGCCTTBCCCEEEEEEEEECC
T ss_pred             eccCCHHHHHHHHHHcCCeEEEeeEeeccccccccccCcceEEEEEEeccc
Confidence            0011245667778899999988877662    21  234577777777643

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.64  E-value=5.7e-16  Score=136.06  Aligned_cols=96  Identities=22%  Similarity=0.287  Sum_probs=84.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccccccCCcCCCCceEEEEcC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      +.+|||||||+|.+++.+++. +..+|+|+|+| .+++.|+++++.+++.+ ++++++|+++++...   ++||+|+++.
T Consensus        67 ~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~---~~fD~Iis~~  141 (349)
T 3q7e_A           67 DKVVLDVGSGTGILCMFAAKA-GARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEEVELPV---EKVDIIISEW  141 (349)
T ss_dssp             TCEEEEESCTTSHHHHHHHHT-TCSEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTCCCSS---SCEEEEEECC
T ss_pred             CCEEEEEeccchHHHHHHHHC-CCCEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHHccCCC---CceEEEEEcc
Confidence            789999999999999888876 56799999999 49999999999999876 999999999986542   7899999964


Q ss_pred             -------cccHHHHHHHHccCcccCeEEE
Q 026122          155 -------VAEMRILAEYCLPLVRVGGLFV  176 (243)
Q Consensus       155 -------~~~~~~~l~~~~~~LkpgG~l~  176 (243)
                             ...+..+++.+.++|||||.++
T Consensus       142 ~~~~l~~~~~~~~~l~~~~r~LkpgG~li  170 (349)
T 3q7e_A          142 MGYCLFYESMLNTVLHARDKWLAPDGLIF  170 (349)
T ss_dssp             CBBTBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             ccccccCchhHHHHHHHHHHhCCCCCEEc
Confidence                   2468899999999999999986

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.63  E-value=1.3e-15  Score=128.44  Aligned_cols=130  Identities=14%  Similarity=-0.005  Sum_probs=98.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCCHH------HHHHHHHHHHHcCC-CCEEEEEcc-c--cccccCCcC
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNK------RCVFLEHAVSLTQL-LNVQIVRGR-A--ETLGKDVSF  143 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~------~~~~a~~~~~~~~~-~~v~~~~~d-~--~~~~~~~~~  143 (243)
                      ++.+|||||||+|..+..++... +..+|+|+|+|+.      +++.++++.+..++ .+++++++| .  ..++..   
T Consensus        43 ~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~---  119 (275)
T 3bkx_A           43 PGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIA---  119 (275)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGGGT---
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCCCC---
Confidence            37899999999999999999875 6689999999997      99999999988887 469999998 3  333322   


Q ss_pred             CCCceEEEEcC----cccHHHHHHHHccCcccCeEEEEEeCCC---c-----------------------------HHHH
Q 026122          144 REQYDVAVARA----VAEMRILAEYCLPLVRVGGLFVAAKGHD---P-----------------------------QEEV  187 (243)
Q Consensus       144 ~~~fD~I~~~~----~~~~~~~l~~~~~~LkpgG~l~~~~~~~---~-----------------------------~~~~  187 (243)
                      .++||+|+++.    ..+...+++.+.++++|||++++..-..   .                             ....
T Consensus       120 ~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  199 (275)
T 3bkx_A          120 DQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYAIAPSDVANIRTLITP  199 (275)
T ss_dssp             TCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHHHHHHHHHHHHHHSCCTTCSCCCCCCH
T ss_pred             CCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEecCCCCchhhhhHHHHHHHHHHHhhccccccccccccCCH
Confidence            26899999965    3356677777777888899998864110   0                             0112


Q ss_pred             HHHHHHHHHhCCeeeEEEEE
Q 026122          188 KNSERAVQLMGASLLQLCSV  207 (243)
Q Consensus       188 ~~~~~~l~~~g~~~~~~~~~  207 (243)
                      .++.+.++++||.+++...+
T Consensus       200 ~~l~~~l~~aGf~~~~~~~~  219 (275)
T 3bkx_A          200 DTLAQIAHDNTWTYTAGTIV  219 (275)
T ss_dssp             HHHHHHHHHHTCEEEECCCB
T ss_pred             HHHHHHHHHCCCeeEEEEEe
Confidence            35667788999988877665

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.63  E-value=3.4e-15  Score=129.70  Aligned_cols=144  Identities=13%  Similarity=0.058  Sum_probs=105.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc--CC--CCEEEEEccccccccCCcCCCCceEEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT--QL--LNVQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~--~~v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      +.+|||||||+|..+..+++..+..+|+++|+|+.+++.++++....  ++  .+++++++|+.+....  ..++||+|+
T Consensus       117 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~--~~~~fDvIi  194 (321)
T 2pt6_A          117 PKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLEN--VTNTYDVII  194 (321)
T ss_dssp             CCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHH--CCSCEEEEE
T ss_pred             CCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhh--cCCCceEEE
Confidence            67999999999999988887656789999999999999999987652  22  4699999998774321  126899999


Q ss_pred             EcCcc------cH--HHHHHHHccCcccCeEEEEEeCC--CcHHHHHHHHHHHHHhCCeeeEEEEEecCCCCCceEEEEE
Q 026122          152 ARAVA------EM--RILAEYCLPLVRVGGLFVAAKGH--DPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVC  221 (243)
Q Consensus       152 ~~~~~------~~--~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~v~~  221 (243)
                      ++...      ..  .++++.+.+.|+|||.+++..+.  ...+.+..+.+.+++. |..........+..+.....+++
T Consensus       195 ~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~v~~~~~~vp~~~~g~w~f~~  273 (321)
T 2pt6_A          195 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKL-FKKVEYANISIPTYPCGCIGILC  273 (321)
T ss_dssp             EECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHTT-CSEEEEEEEECTTSGGGEEEEEE
T ss_pred             ECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHH-CCCeEEEEEEeccccCceEEEEE
Confidence            97521      11  78999999999999999987643  3456677777777665 55555555555554443443333


Q ss_pred             E
Q 026122          222 L  222 (243)
Q Consensus       222 ~  222 (243)
                      .
T Consensus       274 a  274 (321)
T 2pt6_A          274 C  274 (321)
T ss_dssp             E
T ss_pred             e
Confidence            3

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.63  E-value=6.2e-15  Score=127.96  Aligned_cols=128  Identities=17%  Similarity=0.156  Sum_probs=103.3

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEEE
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      +++.+|||+|||+|..+..++..+|+.+++++|++ .+++.++++....++. +++++.+|+.+.+..    +.||+|++
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~----~~~D~v~~  238 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDYG----NDYDLVLL  238 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCCC----SCEEEEEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCCC----CCCcEEEE
Confidence            34789999999999999999999888999999999 9999999999988886 499999999876432    45999999


Q ss_pred             cCc------ccHHHHHHHHccCcccCeEEEEEeCCCcH------------------------HHHHHHHHHHHHhCCeee
Q 026122          153 RAV------AEMRILAEYCLPLVRVGGLFVAAKGHDPQ------------------------EEVKNSERAVQLMGASLL  202 (243)
Q Consensus       153 ~~~------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~------------------------~~~~~~~~~l~~~g~~~~  202 (243)
                      +.+      .+...+++.+.+.|+|||++++.......                        ....++.+.++++||..+
T Consensus       239 ~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGf~~~  318 (335)
T 2r3s_A          239 PNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFSHS  318 (335)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHTTCSEE
T ss_pred             cchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHCCCCee
Confidence            652      23578999999999999998887632110                        014566778889999888


Q ss_pred             EEEE
Q 026122          203 QLCS  206 (243)
Q Consensus       203 ~~~~  206 (243)
                      ++..
T Consensus       319 ~~~~  322 (335)
T 2r3s_A          319 QLHS  322 (335)
T ss_dssp             EEEC
T ss_pred             eEEE
Confidence            7654

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.63  E-value=5.3e-15  Score=125.82  Aligned_cols=146  Identities=17%  Similarity=0.114  Sum_probs=106.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc--CC--CCEEEEEccccccccCCcCCCCceEEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT--QL--LNVQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~--~~v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      +.+|||||||+|..+..+++..+..+|++||+++.+++.++++....  ++  ++++++.+|+.+.....  .++||+|+
T Consensus        76 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~--~~~fD~Ii  153 (275)
T 1iy9_A           76 PEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKS--ENQYDVIM  153 (275)
T ss_dssp             CCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTC--CSCEEEEE
T ss_pred             CCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhC--CCCeeEEE
Confidence            67999999999999988886656689999999999999999987542  33  46999999988743211  26899999


Q ss_pred             EcCccc--------HHHHHHHHccCcccCeEEEEEeCC--CcHHHHHHHHHHHHHhCCeeeEEEEEecCCCCCce-EEEE
Q 026122          152 ARAVAE--------MRILAEYCLPLVRVGGLFVAAKGH--DPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQR-TAVV  220 (243)
Q Consensus       152 ~~~~~~--------~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r-~~v~  220 (243)
                      ++....        ..++++.+.+.|+|||.+++..+.  ...+.+..+.+.+++. |..+.......+..++.. ..++
T Consensus       154 ~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~v~~~~~~vp~~~~g~w~~~~  232 (275)
T 1iy9_A          154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEI-FPITKLYTANIPTYPSGLWTFTI  232 (275)
T ss_dssp             ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTT-CSEEEEEEECCTTSGGGCEEEEE
T ss_pred             ECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCccccHHHHHHHHHHHHHh-CCCeEEEEEecCcccCcceEEEE
Confidence            975321        268999999999999999887643  2355667777777776 555555554555432333 3444


Q ss_pred             EEee
Q 026122          221 CLKS  224 (243)
Q Consensus       221 ~~k~  224 (243)
                      +.|.
T Consensus       233 ask~  236 (275)
T 1iy9_A          233 GSKK  236 (275)
T ss_dssp             EESS
T ss_pred             eeCC
Confidence            4443

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.63  E-value=2.1e-15  Score=122.31  Aligned_cols=103  Identities=13%  Similarity=0.049  Sum_probs=84.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  155 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~  155 (243)
                      +.+|||+|||+|..++.++... ..+|+|+|+|+.+++.++++++.+++.+++++++|+.+.....  .++||+|+++..
T Consensus        55 ~~~vLDlgcG~G~~~~~l~~~~-~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~--~~~fD~V~~~~p  131 (202)
T 2fpo_A           55 DAQCLDCFAGSGALGLEALSRY-AAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQK--GTPHNIVFVDPP  131 (202)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSC--CCCEEEEEECCS
T ss_pred             CCeEEEeCCCcCHHHHHHHhcC-CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhc--CCCCCEEEECCC
Confidence            7899999999999998766553 3599999999999999999999999878999999998843221  268999999753


Q ss_pred             ---ccHHHHHHHHcc--CcccCeEEEEEeCC
Q 026122          156 ---AEMRILAEYCLP--LVRVGGLFVAAKGH  181 (243)
Q Consensus       156 ---~~~~~~l~~~~~--~LkpgG~l~~~~~~  181 (243)
                         .....+++.+.+  +|+|||.+++....
T Consensus       132 ~~~~~~~~~l~~l~~~~~L~pgG~l~i~~~~  162 (202)
T 2fpo_A          132 FRRGLLEETINLLEDNGWLADEALIYVESEV  162 (202)
T ss_dssp             SSTTTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred             CCCCcHHHHHHHHHhcCccCCCcEEEEEECC
Confidence               356677777754  69999999887653

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.63  E-value=1.9e-15  Score=128.35  Aligned_cols=108  Identities=15%  Similarity=0.136  Sum_probs=90.2

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC-cCCCCceEEE
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPD-WKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-SFREQYDVAV  151 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-~~~~~fD~I~  151 (243)
                      .++.+|||+|||+|..+..++...++ .+|+|+|+|+.+++.++++++++++.+++++++|+.++.... ...++||+|+
T Consensus        82 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl  161 (274)
T 3ajd_A           82 REDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKIL  161 (274)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEEE
Confidence            45889999999999999999987655 899999999999999999999999988999999998865310 0026899999


Q ss_pred             EcCc----------------------ccHHHHHHHHccCcccCeEEEEEeCC
Q 026122          152 ARAV----------------------AEMRILAEYCLPLVRVGGLFVAAKGH  181 (243)
Q Consensus       152 ~~~~----------------------~~~~~~l~~~~~~LkpgG~l~~~~~~  181 (243)
                      ++..                      .....+++.+.+.|||||++++....
T Consensus       162 ~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs  213 (274)
T 3ajd_A          162 LDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCS  213 (274)
T ss_dssp             EEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             EcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECC
Confidence            8621                      23578999999999999999987753

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.62  E-value=1.1e-14  Score=129.27  Aligned_cols=177  Identities=15%  Similarity=0.069  Sum_probs=116.3

Q ss_pred             CCcCCCCCCccchHHHHHHHHHHHHHHHHHhcc----CCccccC-ChHHHHHHhHhhhccc--------CCCcc---cc-
Q 026122            2 PFFNGTGYPFSVFMFMFFYLGLFLKKRKQNLQK----MNLTAVK-DVNEVMERHIDDSLAI--------IPPIK---NS-   64 (243)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~n~~----~n~~~~~-~~~~~~~~~~~~~l~~--------~~~~~---~~-   64 (243)
                      +.+.+..|+-.-+..|.+-.+.|.+.+..+.+.    .+..... ....-|.+++++....        +...+   .. 
T Consensus        74 ~~~~~~~~~~~~~~~~~~l~~~yN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~Il~~~Y~r~V~~~~~L~~Ye~Fs~~v  153 (438)
T 3uwp_A           74 ENYVLIDYDTKSFESMQRLCDKYNRAIDSIHQLWKGTTQPMKLNTRPSTGLLRHILQQVYNHSVTDPEKLNNYEPFSPEV  153 (438)
T ss_dssp             CGGGGGGSCTTCHHHHHHHHHHHHHHHHHHHHHHHSSSCCCCCSBCCCHHHHHHHHHHHHHHHCSCGGGSCCCSSSCGGG
T ss_pred             HHhhhhccCccCHHHHHHHHHHHHHHHHHHHHhhccccCcccccCCCCHHHHHHHHHHHHhhcCCCHHHhcCcccCCCcc
Confidence            344455677777778887788888777666543    2221111 0112233444332211        00000   00 


Q ss_pred             cC-------ccCCC--CCCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHH-------HHcCC--CC
Q 026122           65 YT-------SHCDS--SCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAV-------SLTQL--LN  126 (243)
Q Consensus        65 ~~-------~~~~~--~~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~-------~~~~~--~~  126 (243)
                      +-       ..++.  .+.++.+|||||||+|.+++.+|...+..+|+|||+|+.+++.|++++       +.+|+  .+
T Consensus       154 YGEt~~~~i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~r  233 (438)
T 3uwp_A          154 YGETSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAE  233 (438)
T ss_dssp             GGGTHHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCE
T ss_pred             cCCCCHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            00       01111  346789999999999999999998776667999999999999998765       34565  46


Q ss_pred             EEEEEccccccccCCcCCCCceEEEEcCc---ccHHHHHHHHccCcccCeEEEEEe
Q 026122          127 VQIVRGRAETLGKDVSFREQYDVAVARAV---AEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       127 v~~~~~d~~~~~~~~~~~~~fD~I~~~~~---~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      ++++++|+.+.+.... -..||+|+++..   .+....+.++.+.|||||+|++..
T Consensus       234 Vefi~GD~~~lp~~d~-~~~aDVVf~Nn~~F~pdl~~aL~Ei~RvLKPGGrIVssE  288 (438)
T 3uwp_A          234 YTLERGDFLSEEWRER-IANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSK  288 (438)
T ss_dssp             EEEEECCTTSHHHHHH-HHTCSEEEECCTTCCHHHHHHHHHHHTTSCTTCEEEESS
T ss_pred             eEEEECcccCCccccc-cCCccEEEEcccccCchHHHHHHHHHHcCCCCcEEEEee
Confidence            9999999998764210 036999999863   467788889999999999998764

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.62  E-value=5.8e-16  Score=136.97  Aligned_cols=95  Identities=23%  Similarity=0.302  Sum_probs=81.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccccccCCcCCCCceEEEEcC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      +++|||||||+|.+++.+|+. ++.+|+|||.|+ +++.|+++++.+++.+ |++++++++++..+    +++|+|++..
T Consensus        84 ~k~VLDvG~GtGiLs~~Aa~a-GA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lp----e~~DvivsE~  157 (376)
T 4hc4_A           84 GKTVLDVGAGTGILSIFCAQA-GARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVELP----EQVDAIVSEW  157 (376)
T ss_dssp             TCEEEEETCTTSHHHHHHHHT-TCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCCS----SCEEEEECCC
T ss_pred             CCEEEEeCCCccHHHHHHHHh-CCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecCC----ccccEEEeec
Confidence            889999999999999877754 557999999996 8899999999999965 99999999998653    7899999953


Q ss_pred             -------cccHHHHHHHHccCcccCeEEE
Q 026122          155 -------VAEMRILAEYCLPLVRVGGLFV  176 (243)
Q Consensus       155 -------~~~~~~~l~~~~~~LkpgG~l~  176 (243)
                             -..+..++....++|||||.++
T Consensus       158 ~~~~l~~e~~l~~~l~a~~r~Lkp~G~~i  186 (376)
T 4hc4_A          158 MGYGLLHESMLSSVLHARTKWLKEGGLLL  186 (376)
T ss_dssp             CBTTBTTTCSHHHHHHHHHHHEEEEEEEE
T ss_pred             ccccccccchhhhHHHHHHhhCCCCceEC
Confidence                   1257888888899999999987

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.62  E-value=6e-15  Score=130.05  Aligned_cols=142  Identities=8%  Similarity=0.037  Sum_probs=107.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      ..+|||||||+|..+..+++.+|+.+++++|+ +.+++.++++++..++. +++++.+|+.+...+  .+++||+|+++.
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~p~~~D~v~~~~  256 (363)
T 3dp7_A          180 PKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVP--FPTGFDAVWMSQ  256 (363)
T ss_dssp             CSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCC--CCCCCSEEEEES
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCC--CCCCcCEEEEec
Confidence            67999999999999999999999999999999 99999999999888874 699999999875200  126799999865


Q ss_pred             c----c--cHHHHHHHHccCcccCeEEEEEeCC---C-cHH-----------------------HHHHHHHHHHHhCCee
Q 026122          155 V----A--EMRILAEYCLPLVRVGGLFVAAKGH---D-PQE-----------------------EVKNSERAVQLMGASL  201 (243)
Q Consensus       155 ~----~--~~~~~l~~~~~~LkpgG~l~~~~~~---~-~~~-----------------------~~~~~~~~l~~~g~~~  201 (243)
                      +    .  +...+++++.+.|+|||++++....   . ...                       ...++.+.++++||.+
T Consensus       257 vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~AGf~~  336 (363)
T 3dp7_A          257 FLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGLEV  336 (363)
T ss_dssp             CSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSCSSCCSCCHHHHHHHHHTTTEEE
T ss_pred             hhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHhhhCCCCcccCHHHHHHHHHHcCCeE
Confidence            2    2  3467899999999999999886621   1 110                       2356777888999988


Q ss_pred             eEEEEEecCCCCCceEEEEEEee
Q 026122          202 LQLCSVESQSPFGQRTAVVCLKS  224 (243)
Q Consensus       202 ~~~~~~~~~~~~~~r~~v~~~k~  224 (243)
                      +++..    .......++..++.
T Consensus       337 v~~~~----~~g~~~svi~~~~~  355 (363)
T 3dp7_A          337 EEIQD----NIGLGHSILQCRLK  355 (363)
T ss_dssp             SCCCC----CBTTTBEEEEEEEC
T ss_pred             EEEEe----CCCCCceEEEEeec
Confidence            77643    22233555555554

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.62  E-value=2.2e-15  Score=121.81  Aligned_cols=99  Identities=16%  Similarity=0.234  Sum_probs=82.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  155 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~  155 (243)
                      +.+|||+|||+|..+..++.. ++.+|+|+|+|+.+++.++++++..+. +++++++|+.+++..   +++||+|++...
T Consensus        24 ~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~---~~~fD~v~~~~~   98 (209)
T 2p8j_A           24 DKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSRENNF-KLNISKGDIRKLPFK---DESMSFVYSYGT   98 (209)
T ss_dssp             CSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHHTC-CCCEEECCTTSCCSC---TTCEEEEEECSC
T ss_pred             CCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcCC-ceEEEECchhhCCCC---CCceeEEEEcCh
Confidence            789999999999975444434 467999999999999999999887763 588999999987643   268999999642


Q ss_pred             ------ccHHHHHHHHccCcccCeEEEEEe
Q 026122          156 ------AEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       156 ------~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                            .+...+++++.++|||||.+++..
T Consensus        99 l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  128 (209)
T 2p8j_A           99 IFHMRKNDVKEAIDEIKRVLKPGGLACINF  128 (209)
T ss_dssp             GGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence                  467899999999999999998765

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.62  E-value=2.3e-14  Score=125.75  Aligned_cols=129  Identities=16%  Similarity=0.143  Sum_probs=103.0

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEEE
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      +++.+|||||||+|..+..++...|+.+++++|+ +.+++.++++++..++. +++++.+|+.+. .    +..||+|++
T Consensus       182 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~----~~~~D~v~~  255 (360)
T 1tw3_A          182 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEP-L----PRKADAIIL  255 (360)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSC-C----SSCEEEEEE
T ss_pred             ccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCC-C----CCCccEEEE
Confidence            4578999999999999999999988899999999 99999999999998885 699999999762 1    145999998


Q ss_pred             cCcc----c--HHHHHHHHccCcccCeEEEEEeCC-Cc-----H-----------------HHHHHHHHHHHHhCCeeeE
Q 026122          153 RAVA----E--MRILAEYCLPLVRVGGLFVAAKGH-DP-----Q-----------------EEVKNSERAVQLMGASLLQ  203 (243)
Q Consensus       153 ~~~~----~--~~~~l~~~~~~LkpgG~l~~~~~~-~~-----~-----------------~~~~~~~~~l~~~g~~~~~  203 (243)
                      ..+.    +  ...+++++.+.|+|||++++.... ..     .                 ....++.+.++++||.+++
T Consensus       256 ~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~  335 (360)
T 1tw3_A          256 SFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEE  335 (360)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEE
T ss_pred             cccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCCcCCCHHHHHHHHHHCCCeEEE
Confidence            6522    2  358999999999999999987533 11     0                 0134567778899999888


Q ss_pred             EEEEe
Q 026122          204 LCSVE  208 (243)
Q Consensus       204 ~~~~~  208 (243)
                      +....
T Consensus       336 ~~~~~  340 (360)
T 1tw3_A          336 VRQLP  340 (360)
T ss_dssp             EEEEE
T ss_pred             EEeCC
Confidence            76643

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.62  E-value=2e-14  Score=126.94  Aligned_cols=127  Identities=14%  Similarity=0.112  Sum_probs=101.6

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEEE
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      ++..+|||||||+|..+..+++.+|+.+++++|+ +.+++.+++++...++. +++++.+|+.+ +.    +.+||+|++
T Consensus       201 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~-~~----p~~~D~v~~  274 (369)
T 3gwz_A          201 SGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFE-TI----PDGADVYLI  274 (369)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTT-CC----CSSCSEEEE
T ss_pred             ccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCC-CC----CCCceEEEh
Confidence            3478999999999999999999999999999999 99999999999988874 69999999983 21    247999999


Q ss_pred             cCc----cc--HHHHHHHHccCcccCeEEEEEeCC--C--cH-----------------HHHHHHHHHHHHhCCeeeEEE
Q 026122          153 RAV----AE--MRILAEYCLPLVRVGGLFVAAKGH--D--PQ-----------------EEVKNSERAVQLMGASLLQLC  205 (243)
Q Consensus       153 ~~~----~~--~~~~l~~~~~~LkpgG~l~~~~~~--~--~~-----------------~~~~~~~~~l~~~g~~~~~~~  205 (243)
                      +.+    .+  ...+++++.+.|+|||++++....  .  ..                 ....++.+.++++||+++++.
T Consensus       275 ~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~  354 (369)
T 3gwz_A          275 KHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALLEKSGLRVERSL  354 (369)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHHTTTEEEEEEE
T ss_pred             hhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHHHCCCeEEEEE
Confidence            752    22  347999999999999999986521  1  00                 113456778889999988775


Q ss_pred             E
Q 026122          206 S  206 (243)
Q Consensus       206 ~  206 (243)
                      .
T Consensus       355 ~  355 (369)
T 3gwz_A          355 P  355 (369)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.62  E-value=2.9e-15  Score=123.69  Aligned_cols=104  Identities=23%  Similarity=0.405  Sum_probs=88.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      +.+|||+|||+|..++.++...|+.+|+++|+|+.+++.++++++..++. +++++++|+.+........++||+|+++.
T Consensus        55 ~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  134 (233)
T 2gpy_A           55 PARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFIDA  134 (233)
T ss_dssp             CSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEEEG
T ss_pred             CCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEECC
Confidence            77999999999999999999888889999999999999999999999985 59999999987422100026899999976


Q ss_pred             c-ccHHHHHHHHccCcccCeEEEEEe
Q 026122          155 V-AEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       155 ~-~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      . ..+..+++.+.+.|+|||.+++..
T Consensus       135 ~~~~~~~~l~~~~~~L~pgG~lv~~~  160 (233)
T 2gpy_A          135 AKGQYRRFFDMYSPMVRPGGLILSDN  160 (233)
T ss_dssp             GGSCHHHHHHHHGGGEEEEEEEEEET
T ss_pred             CHHHHHHHHHHHHHHcCCCeEEEEEc
Confidence            3 468899999999999999988863

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.62  E-value=3.8e-15  Score=130.17  Aligned_cols=135  Identities=12%  Similarity=0.078  Sum_probs=101.8

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCEEEEEccccccccCCcCCCCceEEEE
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      .++.+|||+|||+|.+++. |.  ++.+|+|+|+|+.+++.+++|++.+++ .+++++++|+.++.      ++||+|++
T Consensus       194 ~~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~------~~fD~Vi~  264 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD------VKGNRVIM  264 (336)
T ss_dssp             CTTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC------CCEEEEEE
T ss_pred             CCCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc------CCCcEEEE
Confidence            4688999999999999988 75  478999999999999999999999998 46999999998864      57999999


Q ss_pred             cCcccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHh-CCeeeEEEEEecCCCCCceEEEEE
Q 026122          153 RAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLM-GASLLQLCSVESQSPFGQRTAVVC  221 (243)
Q Consensus       153 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~~~~~~~~~~~~r~~v~~  221 (243)
                      +.......+++.+.++|+|||.+++.......   ....+.++.. |+.+..++.+.... +..+++++.
T Consensus       265 dpP~~~~~~l~~~~~~L~~gG~l~~~~~~~~~---~~~~~~l~~~~~~~i~~~~~v~~~~-p~~~~~~~~  330 (336)
T 2yx1_A          265 NLPKFAHKFIDKALDIVEEGGVIHYYTIGKDF---DKAIKLFEKKCDCEVLEKRIVKSYA-PREYILALD  330 (336)
T ss_dssp             CCTTTGGGGHHHHHHHEEEEEEEEEEEEESSS---HHHHHHHHHHSEEEEEEEEEEEEEE-TTEEEEEEE
T ss_pred             CCcHhHHHHHHHHHHHcCCCCEEEEEEeecCc---hHHHHHHHHhcCCcEEEEEEEeccC-CCCCEEEEE
Confidence            85444568889999999999998886532222   3334445555 77665555444222 334554443

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.62  E-value=4.6e-15  Score=129.85  Aligned_cols=96  Identities=20%  Similarity=0.247  Sum_probs=83.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      +.+|||||||+|.+++.+++. +..+|+|+|+|+ +++.|+++++.+++ .+++++++|+.+++...   ++||+|+++.
T Consensus        65 ~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~---~~~D~Ivs~~  139 (340)
T 2fyt_A           65 DKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHLPV---EKVDVIISEW  139 (340)
T ss_dssp             TCEEEEETCTTSHHHHHHHHT-TCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSC---SCEEEEEECC
T ss_pred             CCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCC---CcEEEEEEcC
Confidence            789999999999999888876 456999999996 99999999999998 57999999999876532   6899999865


Q ss_pred             c-------ccHHHHHHHHccCcccCeEEE
Q 026122          155 V-------AEMRILAEYCLPLVRVGGLFV  176 (243)
Q Consensus       155 ~-------~~~~~~l~~~~~~LkpgG~l~  176 (243)
                      .       ..+..+++.+.++|||||.++
T Consensus       140 ~~~~l~~~~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          140 MGYFLLFESMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             CBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             chhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence            1       246789999999999999987

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.62  E-value=2e-14  Score=116.24  Aligned_cols=121  Identities=11%  Similarity=0.071  Sum_probs=92.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  155 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~  155 (243)
                      +.+|||+|||+|..++.++.. +..+|+|+|+|+.+++.++++++.+++ +++++++|+.+++      ++||+|+++..
T Consensus        50 ~~~vlD~g~G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~------~~~D~v~~~~p  121 (207)
T 1wy7_A           50 GKVVADLGAGTGVLSYGALLL-GAKEVICVEVDKEAVDVLIENLGEFKG-KFKVFIGDVSEFN------SRVDIVIMNPP  121 (207)
T ss_dssp             TCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHTGGGTT-SEEEEESCGGGCC------CCCSEEEECCC
T ss_pred             cCEEEEeeCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCC-CEEEEECchHHcC------CCCCEEEEcCC
Confidence            789999999999999888876 345899999999999999999998888 7999999998863      57999999752


Q ss_pred             ------ccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEEEe
Q 026122          156 ------AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVE  208 (243)
Q Consensus       156 ------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~  208 (243)
                            .....+++.+.+.+  ||. ++..- ........+.+.++..|+.+..+....
T Consensus       122 ~~~~~~~~~~~~l~~~~~~l--~~~-~~~~~-~~~~~~~~~~~~l~~~g~~~~~~~~~~  176 (207)
T 1wy7_A          122 FGSQRKHADRPFLLKAFEIS--DVV-YSIHL-AKPEVRRFIEKFSWEHGFVVTHRLTTK  176 (207)
T ss_dssp             CSSSSTTTTHHHHHHHHHHC--SEE-EEEEE-CCHHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             CccccCCchHHHHHHHHHhc--CcE-EEEEe-CCcCCHHHHHHHHHHCCCeEEEEEEEe
Confidence                  23456778887777  554 44331 112333445566778998887766654

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.62  E-value=1.2e-15  Score=119.34  Aligned_cols=104  Identities=26%  Similarity=0.331  Sum_probs=83.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcccccccc-CCcCCCCceEEEEcC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK-DVSFREQYDVAVARA  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~~~fD~I~~~~  154 (243)
                      +.+|||+|||+|..++.++...  .+|+|+|+|+.+++.++++++.+++ +++++++|+.+... .....++||+|+++.
T Consensus        42 ~~~vLD~GcG~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~  118 (171)
T 1ws6_A           42 RGRFLDPFAGSGAVGLEAASEG--WEAVLVEKDPEAVRLLKENVRRTGL-GARVVALPVEVFLPEAKAQGERFTVAFMAP  118 (171)
T ss_dssp             CCEEEEETCSSCHHHHHHHHTT--CEEEEECCCHHHHHHHHHHHHHHTC-CCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CCeEEEeCCCcCHHHHHHHHCC--CeEEEEeCCHHHHHHHHHHHHHcCC-ceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence            7899999999999998888764  4599999999999999999999888 79999999987422 110014799999975


Q ss_pred             c--ccHHHHHHHHc--cCcccCeEEEEEeCCC
Q 026122          155 V--AEMRILAEYCL--PLVRVGGLFVAAKGHD  182 (243)
Q Consensus       155 ~--~~~~~~l~~~~--~~LkpgG~l~~~~~~~  182 (243)
                      .  .....+++.+.  ++|+|||.+++.....
T Consensus       119 ~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~~~  150 (171)
T 1ws6_A          119 PYAMDLAALFGELLASGLVEAGGLYVLQHPKD  150 (171)
T ss_dssp             CTTSCTTHHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred             CCchhHHHHHHHHHhhcccCCCcEEEEEeCCc
Confidence            2  34566777777  9999999999877543

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.61  E-value=9.6e-15  Score=124.55  Aligned_cols=143  Identities=13%  Similarity=0.112  Sum_probs=104.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc--C---------CCCEEEEEccccccccCCcCC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT--Q---------LLNVQIVRGRAETLGKDVSFR  144 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~---------~~~v~~~~~d~~~~~~~~~~~  144 (243)
                      +.+|||||||+|..+..+++. +..+|++||+|+.+++.++++. ..  +         ..+++++++|+.+....   .
T Consensus        76 ~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~---~  150 (281)
T 1mjf_A           76 PKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN---N  150 (281)
T ss_dssp             CCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH---C
T ss_pred             CCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc---c
Confidence            679999999999999888876 7789999999999999999987 43  2         24699999998764321   2


Q ss_pred             CCceEEEEcCcc------c--HHHHHHHHccCcccCeEEEEEeCC--CcHHHHHHHHHHHHHhCCeeeEEEEEecCCCCC
Q 026122          145 EQYDVAVARAVA------E--MRILAEYCLPLVRVGGLFVAAKGH--DPQEEVKNSERAVQLMGASLLQLCSVESQSPFG  214 (243)
Q Consensus       145 ~~fD~I~~~~~~------~--~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  214 (243)
                      ++||+|+++...      .  ..++++.+.+.|+|||.+++..+.  ...+.+..+.+.++.. |..........|..++
T Consensus       151 ~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~-f~~v~~~~~~vP~~~g  229 (281)
T 1mjf_A          151 RGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKV-FDRVYYYSFPVIGYAS  229 (281)
T ss_dssp             CCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHH-CSEEEEEEECCTTSSS
T ss_pred             CCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHH-CCceEEEEEecCCCCc
Confidence            689999997532      1  277899999999999999887532  3455566666666665 5555554444555434


Q ss_pred             ceEEEEEEee
Q 026122          215 QRTAVVCLKS  224 (243)
Q Consensus       215 ~r~~v~~~k~  224 (243)
                      .-..+++.|.
T Consensus       230 ~~~~~~as~~  239 (281)
T 1mjf_A          230 PWAFLVGVKG  239 (281)
T ss_dssp             SEEEEEEEES
T ss_pred             eEEEEEeeCC
Confidence            4444555554

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.61  E-value=3.5e-15  Score=129.22  Aligned_cols=146  Identities=12%  Similarity=0.041  Sum_probs=103.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH--cC---CCCEEEEEccccccccCCcCCCCceEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSL--TQ---LLNVQIVRGRAETLGKDVSFREQYDVA  150 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~---~~~v~~~~~d~~~~~~~~~~~~~fD~I  150 (243)
                      +.+|||||||+|..+..+++..+..+|++||+|+.+++.++++...  .+   ..+++++++|+.+....  ..++||+|
T Consensus        78 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~--~~~~fD~I  155 (314)
T 1uir_A           78 PKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLER--TEERYDVV  155 (314)
T ss_dssp             CCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHH--CCCCEEEE
T ss_pred             CCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHh--cCCCccEE
Confidence            6799999999999998888766678999999999999999998765  22   35699999999875221  13689999


Q ss_pred             EEcCccc-----------HHHHHHHHccCcccCeEEEEEeCC---CcHHHHHHHHHHHHHhCCeeeEEEEEecCCCCCce
Q 026122          151 VARAVAE-----------MRILAEYCLPLVRVGGLFVAAKGH---DPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQR  216 (243)
Q Consensus       151 ~~~~~~~-----------~~~~l~~~~~~LkpgG~l~~~~~~---~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r  216 (243)
                      +++....           ..++++.+.++|+|||.+++..+.   ...+....+.+.++.. |..........+..++.-
T Consensus       156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~l~~~-F~~v~~~~~~vP~~~g~~  234 (314)
T 1uir_A          156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREA-FRYVRSYKNHIPGFFLNF  234 (314)
T ss_dssp             EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTT-CSEEEEEEEEEGGGTEEE
T ss_pred             EECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEccCccccCHHHHHHHHHHHHHH-CCceEEEEEecCCCCCeE
Confidence            9975321           378999999999999999987532   2234455556666655 444554444445443344


Q ss_pred             EEEEEEee
Q 026122          217 TAVVCLKS  224 (243)
Q Consensus       217 ~~v~~~k~  224 (243)
                      .++++.|.
T Consensus       235 ~~~~as~~  242 (314)
T 1uir_A          235 GFLLASDA  242 (314)
T ss_dssp             EEEEEESS
T ss_pred             EEEEEECC
Confidence            44555443

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.61  E-value=1.9e-15  Score=126.53  Aligned_cols=104  Identities=17%  Similarity=0.206  Sum_probs=88.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCc----CCCCceE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVS----FREQYDV  149 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~----~~~~fD~  149 (243)
                      +.+|||||||+|..++.++...| +++|+++|+|+++++.++++++..++. +++++++|+.+......    ..++||+
T Consensus        80 ~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~  159 (247)
T 1sui_A           80 AKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDF  159 (247)
T ss_dssp             CCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBSE
T ss_pred             cCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEEE
Confidence            67999999999999999999876 789999999999999999999999984 59999999877522100    0268999


Q ss_pred             EEEcC-cccHHHHHHHHccCcccCeEEEEEe
Q 026122          150 AVARA-VAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       150 I~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      |++.+ ...+..+++.+.++|+|||.+++..
T Consensus       160 V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d~  190 (247)
T 1sui_A          160 IFVDADKDNYLNYHKRLIDLVKVGGVIGYDN  190 (247)
T ss_dssp             EEECSCSTTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred             EEEcCchHHHHHHHHHHHHhCCCCeEEEEec
Confidence            99976 4578899999999999999988754

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.61  E-value=2.1e-14  Score=127.14  Aligned_cols=126  Identities=10%  Similarity=0.140  Sum_probs=98.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccc-cccCCcCCCCceEEEEcC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAET-LGKDVSFREQYDVAVARA  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~~~~~~~~~~fD~I~~~~  154 (243)
                      +.+|||+| |+|.+++.++...+..+|+++|+|+.+++.++++++.+++.+++++++|+.+ ++..  ..++||+|+++.
T Consensus       173 ~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~--~~~~fD~Vi~~~  249 (373)
T 2qm3_A          173 NKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDY--ALHKFDTFITDP  249 (373)
T ss_dssp             TCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTT--TSSCBSEEEECC
T ss_pred             CCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhh--ccCCccEEEECC
Confidence            78999999 9999999999887668999999999999999999999998789999999988 5421  125899999985


Q ss_pred             c---ccHHHHHHHHccCcccCeEE-EEEeCC--CcHHHHHHHHHHHH-HhCCeeeEE
Q 026122          155 V---AEMRILAEYCLPLVRVGGLF-VAAKGH--DPQEEVKNSERAVQ-LMGASLLQL  204 (243)
Q Consensus       155 ~---~~~~~~l~~~~~~LkpgG~l-~~~~~~--~~~~~~~~~~~~l~-~~g~~~~~~  204 (243)
                      .   .....+++.+.+.|+|||++ ++....  ........+.+.+. ..|+.+..+
T Consensus       250 p~~~~~~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~  306 (373)
T 2qm3_A          250 PETLEAIRAFVGRGIATLKGPRCAGYFGITRRESSLDKWREIQKLLLNEFNVVITDI  306 (373)
T ss_dssp             CSSHHHHHHHHHHHHHTBCSTTCEEEEEECTTTCCHHHHHHHHHHHHHTSCCEEEEE
T ss_pred             CCchHHHHHHHHHHHHHcccCCeEEEEEEecCcCCHHHHHHHHHHHHHhcCcchhhh
Confidence            2   23578899999999999944 444443  33322244556666 788876544

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.61  E-value=6.2e-15  Score=129.39  Aligned_cols=97  Identities=20%  Similarity=0.259  Sum_probs=82.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      +.+|||||||+|.+++.+++. +..+|+|+|+|+ +++.++++++.+++ .+++++++|++++...    ++||+|++..
T Consensus        51 ~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~----~~~D~Ivs~~  124 (348)
T 2y1w_A           51 DKIVLDVGCGSGILSFFAAQA-GARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP----EQVDIIISEP  124 (348)
T ss_dssp             TCEEEEETCTTSHHHHHHHHT-TCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS----SCEEEEEECC
T ss_pred             cCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCCCC----CceeEEEEeC
Confidence            789999999999999888865 567999999996 88999999999998 4699999999987542    6899999974


Q ss_pred             c------ccHHHHHHHHccCcccCeEEEEE
Q 026122          155 V------AEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       155 ~------~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                      .      ......+..+.++|||||.+++.
T Consensus       125 ~~~~~~~~~~~~~l~~~~~~LkpgG~li~~  154 (348)
T 2y1w_A          125 MGYMLFNERMLESYLHAKKYLKPSGNMFPT  154 (348)
T ss_dssp             CBTTBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred             chhcCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence            2      24667788899999999998843

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.61  E-value=8.4e-15  Score=121.58  Aligned_cols=121  Identities=15%  Similarity=0.074  Sum_probs=96.4

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCEEEEEccccccccCCcCCCCceEEEE
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      .++.+|||+|||+|..++.++..  +.+|+++|+++.+++.++++.+..++ .+++++.+|+.+....   .++||+|++
T Consensus        90 ~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~D~v~~  164 (248)
T 2yvl_A           90 NKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVP---EGIFHAAFV  164 (248)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCC---TTCBSEEEE
T ss_pred             CCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccC---CCcccEEEE
Confidence            34789999999999999999987  67999999999999999999999888 5799999999885412   267999999


Q ss_pred             cCcccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeE
Q 026122          153 RAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQ  203 (243)
Q Consensus       153 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~  203 (243)
                      +. .+...+++.+.+.|+|||.+++.....  ....++.+.++.. |...+
T Consensus       165 ~~-~~~~~~l~~~~~~L~~gG~l~~~~~~~--~~~~~~~~~l~~~-f~~~~  211 (248)
T 2yvl_A          165 DV-REPWHYLEKVHKSLMEGAPVGFLLPTA--NQVIKLLESIENY-FGNLE  211 (248)
T ss_dssp             CS-SCGGGGHHHHHHHBCTTCEEEEEESSH--HHHHHHHHHSTTT-EEEEE
T ss_pred             CC-cCHHHHHHHHHHHcCCCCEEEEEeCCH--HHHHHHHHHHHhh-CCcce
Confidence            53 355678899999999999999987642  3444555555555 55443

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.61  E-value=2.6e-14  Score=125.08  Aligned_cols=139  Identities=14%  Similarity=0.097  Sum_probs=107.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      +.+|||||||+|..+..+++.+|+.+++++|+ +.+++.++++....++. +++++.+|+.+....  .+++||+|+++.
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~~~D~v~~~~  256 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNF--EGGAADVVMLND  256 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGG--TTCCEEEEEEES
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCccc--CCCCccEEEEec
Confidence            67999999999999999999999999999999 88999999999988875 499999999886410  125799999965


Q ss_pred             c----c--cHHHHHHHHccCcccCeEEEEEeCC------Cc------------------HHHHHHHHHHHHHhCCeeeEE
Q 026122          155 V----A--EMRILAEYCLPLVRVGGLFVAAKGH------DP------------------QEEVKNSERAVQLMGASLLQL  204 (243)
Q Consensus       155 ~----~--~~~~~l~~~~~~LkpgG~l~~~~~~------~~------------------~~~~~~~~~~l~~~g~~~~~~  204 (243)
                      +    .  +...+++.+.+.|+|||++++....      ..                  .....++.+.++++||++++.
T Consensus       257 vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~  336 (352)
T 3mcz_A          257 CLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGVVRDAGLAVGER  336 (352)
T ss_dssp             CGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred             ccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHHHHHHHCCCceeee
Confidence            2    2  3478999999999999999886521      00                  001345677888999988773


Q ss_pred             EEEecCCCCCceEEEEEEee
Q 026122          205 CSVESQSPFGQRTAVVCLKS  224 (243)
Q Consensus       205 ~~~~~~~~~~~r~~v~~~k~  224 (243)
                      .       .+...+++.+|.
T Consensus       337 ~-------~g~~~l~~a~kp  349 (352)
T 3mcz_A          337 S-------IGRYTLLIGQRS  349 (352)
T ss_dssp             E-------ETTEEEEEEECC
T ss_pred             c-------cCceEEEEEecC
Confidence            2       134555555553

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.60  E-value=2.6e-14  Score=124.27  Aligned_cols=126  Identities=18%  Similarity=0.116  Sum_probs=102.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEEEc
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      +..+|||||||+|..+..++..+|+.+++++|+ +.+++.+++++...++. +++++.+|+.+ +.    +.+||+|+++
T Consensus       169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~----p~~~D~v~~~  242 (332)
T 3i53_A          169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFD-PL----PAGAGGYVLS  242 (332)
T ss_dssp             GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CC----CCSCSEEEEE
T ss_pred             CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCC-CC----CCCCcEEEEe
Confidence            367999999999999999999999999999999 99999999999988874 69999999973 21    1479999997


Q ss_pred             Cc----cc--HHHHHHHHccCcccCeEEEEEeCCCcH-------------------HHHHHHHHHHHHhCCeeeEEEE
Q 026122          154 AV----AE--MRILAEYCLPLVRVGGLFVAAKGHDPQ-------------------EEVKNSERAVQLMGASLLQLCS  206 (243)
Q Consensus       154 ~~----~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~-------------------~~~~~~~~~l~~~g~~~~~~~~  206 (243)
                      .+    .+  ...+++++.+.|+|||++++.......                   ....++.+.++++||+.+++..
T Consensus       243 ~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~  320 (332)
T 3i53_A          243 AVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAVRAAHP  320 (332)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred             hhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEEEEEEE
Confidence            52    22  578999999999999999987632111                   1134577788899998887754

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.60  E-value=8.8e-15  Score=115.48  Aligned_cols=127  Identities=15%  Similarity=0.051  Sum_probs=91.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  155 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~  155 (243)
                      +.+|||+|||+|.+++.++...   +|+|+|+|+.+++.         ..+++++++|+.+. ..   .++||+|+++..
T Consensus        24 ~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~---------~~~~~~~~~d~~~~-~~---~~~fD~i~~n~~   87 (170)
T 3q87_B           24 MKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES---------HRGGNLVRADLLCS-IN---QESVDVVVFNPP   87 (170)
T ss_dssp             SCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT---------CSSSCEEECSTTTT-BC---GGGCSEEEECCC
T ss_pred             CCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc---------ccCCeEEECChhhh-cc---cCCCCEEEECCC
Confidence            6799999999999998888653   99999999998876         34689999999873 22   168999999742


Q ss_pred             c-------------cHHHHHHHHccCcccCeEEEEEe-CCCcHHHHHHHHHHHHHhCCeeeEEEEEecCCCCCceEEEEE
Q 026122          156 A-------------EMRILAEYCLPLVRVGGLFVAAK-GHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVC  221 (243)
Q Consensus       156 ~-------------~~~~~l~~~~~~LkpgG~l~~~~-~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~v~~  221 (243)
                      -             +...+++.+.+.+ |||.+++.. +....   .++.+.+++.||....+.....   .-++.+++.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~~~---~~l~~~l~~~gf~~~~~~~~~~---~~e~~~~~~  160 (170)
T 3q87_B           88 YVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEANRP---KEVLARLEERGYGTRILKVRKI---LGETVYIIK  160 (170)
T ss_dssp             CBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGGGCH---HHHHHHHHHTTCEEEEEEEEEC---SSSEEEEEE
T ss_pred             CccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecCCCH---HHHHHHHHHCCCcEEEEEeecc---CCceEEEEE
Confidence            1             1345667777777 999999876 33333   4456667799998887766442   234555544


Q ss_pred             EeeC
Q 026122          222 LKSR  225 (243)
Q Consensus       222 ~k~~  225 (243)
                      .+++
T Consensus       161 ~~~~  164 (170)
T 3q87_B          161 GEKS  164 (170)
T ss_dssp             EECC
T ss_pred             Eecc
Confidence            4443

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.60  E-value=5.5e-15  Score=120.31  Aligned_cols=127  Identities=18%  Similarity=0.143  Sum_probs=94.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      ++.+|||||||+|..+..+     +.+|+|+|+|+.               +++++++|+.+++..   .++||+|++..
T Consensus        67 ~~~~vLDiG~G~G~~~~~l-----~~~v~~~D~s~~---------------~~~~~~~d~~~~~~~---~~~fD~v~~~~  123 (215)
T 2zfu_A           67 ASLVVADFGCGDCRLASSI-----RNPVHCFDLASL---------------DPRVTVCDMAQVPLE---DESVDVAVFCL  123 (215)
T ss_dssp             TTSCEEEETCTTCHHHHHC-----CSCEEEEESSCS---------------STTEEESCTTSCSCC---TTCEEEEEEES
T ss_pred             CCCeEEEECCcCCHHHHHh-----hccEEEEeCCCC---------------CceEEEeccccCCCC---CCCEeEEEEeh
Confidence            3689999999999987555     268999999986               467889999886543   26899999975


Q ss_pred             c---ccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEEEecCCCCCceEEEEEEeeCCCCC
Q 026122          155 V---AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPK  229 (243)
Q Consensus       155 ~---~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~v~~~k~~~~~~  229 (243)
                      .   .+...+++.+.++|+|||.+++...........++.+.++.+||.++...     .......++.++|......
T Consensus       124 ~l~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~l~~~Gf~~~~~~-----~~~~~~~~~~~~k~~~~~~  196 (215)
T 2zfu_A          124 SLMGTNIRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAVTKLGFKIVSKD-----LTNSHFFLFDFQKTGPPLV  196 (215)
T ss_dssp             CCCSSCHHHHHHHHHHHEEEEEEEEEEECGGGCSCHHHHHHHHHHTTEEEEEEE-----CCSTTCEEEEEEECSSCSS
T ss_pred             hccccCHHHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHHHHHHCCCEEEEEe-----cCCCeEEEEEEEecCcccc
Confidence            3   57899999999999999999987643222234566777889999876643     2234556677777644443

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.60  E-value=5.6e-15  Score=130.97  Aligned_cols=102  Identities=14%  Similarity=0.142  Sum_probs=87.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC---CEEEEEccccccccCCcCCCCceEEEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL---NVQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~---~v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      +.+|||+|||+|.+++.++...|+.+|+|+|+|+.+++.++++++.+++.   +++++.+|+.+...    .++||+|++
T Consensus       223 ~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~----~~~fD~Ii~  298 (375)
T 4dcm_A          223 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE----PFRFNAVLC  298 (375)
T ss_dssp             CSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCC----TTCEEEEEE
T ss_pred             CCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCC----CCCeeEEEE
Confidence            57999999999999999999988999999999999999999999998875   48899999987422    268999999


Q ss_pred             cCc---------ccHHHHHHHHccCcccCeEEEEEeCC
Q 026122          153 RAV---------AEMRILAEYCLPLVRVGGLFVAAKGH  181 (243)
Q Consensus       153 ~~~---------~~~~~~l~~~~~~LkpgG~l~~~~~~  181 (243)
                      +..         .....+++.+.+.|+|||.++++...
T Consensus       299 nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~  336 (375)
T 4dcm_A          299 NPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANR  336 (375)
T ss_dssp             CCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred             CCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEEC
Confidence            742         12357899999999999999987644

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.60  E-value=1.7e-14  Score=125.76  Aligned_cols=122  Identities=14%  Similarity=0.150  Sum_probs=92.6

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHcC-----------CCCEEEEEccccccccCC
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIA-CPDWKVTLLESMNKRCVFLEHAVSLTQ-----------LLNVQIVRGRAETLGKDV  141 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~-----------~~~v~~~~~d~~~~~~~~  141 (243)
                      .++.+|||+|||+|.+++.++.. .+..+|+++|+++.+++.|+++.+..+           ..+++++.+|+.+.....
T Consensus       104 ~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~~  183 (336)
T 2b25_A          104 NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDI  183 (336)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC---
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHccccc
Confidence            44889999999999999999987 466899999999999999999988643           246999999998863210


Q ss_pred             cCCCCceEEEEcCcccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCC
Q 026122          142 SFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGA  199 (243)
Q Consensus       142 ~~~~~fD~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~  199 (243)
                       ..++||+|+++.. ....+++.+.+.|+|||.+++....  ...+.++.+.++..+.
T Consensus       184 -~~~~fD~V~~~~~-~~~~~l~~~~~~LkpgG~lv~~~~~--~~~~~~~~~~l~~~~~  237 (336)
T 2b25_A          184 -KSLTFDAVALDML-NPHVTLPVFYPHLKHGGVCAVYVVN--ITQVIELLDGIRTCEL  237 (336)
T ss_dssp             -----EEEEEECSS-STTTTHHHHGGGEEEEEEEEEEESS--HHHHHHHHHHHHHHTC
T ss_pred             -CCCCeeEEEECCC-CHHHHHHHHHHhcCCCcEEEEEeCC--HHHHHHHHHHHHhcCC
Confidence             1257999999753 3344789999999999999987653  4455666666666544

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.60  E-value=3e-15  Score=121.86  Aligned_cols=96  Identities=17%  Similarity=0.173  Sum_probs=81.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  155 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~  155 (243)
                      +.+|||+|||+|..+..++..  +.+|+|+|+|+.+++.++++....+  +++++++|+.++..    .++||+|+++..
T Consensus        52 ~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~d~~~~~~----~~~fD~v~~~~~  123 (216)
T 3ofk_A           52 VSNGLEIGCAAGAFTEKLAPH--CKRLTVIDVMPRAIGRACQRTKRWS--HISWAATDILQFST----AELFDLIVVAEV  123 (216)
T ss_dssp             EEEEEEECCTTSHHHHHHGGG--EEEEEEEESCHHHHHHHHHHTTTCS--SEEEEECCTTTCCC----SCCEEEEEEESC
T ss_pred             CCcEEEEcCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhcccCC--CeEEEEcchhhCCC----CCCccEEEEccH
Confidence            679999999999999888866  3699999999999999998876543  79999999999863    278999999742


Q ss_pred             ----cc---HHHHHHHHccCcccCeEEEEEe
Q 026122          156 ----AE---MRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       156 ----~~---~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                          .+   +..+++.+.++|||||.+++..
T Consensus       124 l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  154 (216)
T 3ofk_A          124 LYYLEDMTQMRTAIDNMVKMLAPGGHLVFGS  154 (216)
T ss_dssp             GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             HHhCCCHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence                23   3677999999999999999865

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.59  E-value=1.8e-15  Score=134.14  Aligned_cols=96  Identities=22%  Similarity=0.276  Sum_probs=83.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccccccCCcCCCCceEEEEcC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      +.+|||||||+|.+++.+++. +..+|+|||+| .+++.++++++.+++.+ ++++++|++++...    ++||+|+++.
T Consensus        64 ~~~VLDlGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~----~~~D~Iv~~~  137 (376)
T 3r0q_C           64 GKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLP----EKVDVIISEW  137 (376)
T ss_dssp             TCEEEEESCTTTHHHHHHHHT-TCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCS----SCEEEEEECC
T ss_pred             CCEEEEeccCcCHHHHHHHhc-CCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcC----CcceEEEEcC
Confidence            789999999999999888876 44599999999 99999999999999865 99999999998653    6899999964


Q ss_pred             c-------ccHHHHHHHHccCcccCeEEEE
Q 026122          155 V-------AEMRILAEYCLPLVRVGGLFVA  177 (243)
Q Consensus       155 ~-------~~~~~~l~~~~~~LkpgG~l~~  177 (243)
                      .       ..+..+++.+.++|||||.+++
T Consensus       138 ~~~~l~~e~~~~~~l~~~~~~LkpgG~li~  167 (376)
T 3r0q_C          138 MGYFLLRESMFDSVISARDRWLKPTGVMYP  167 (376)
T ss_dssp             CBTTBTTTCTHHHHHHHHHHHEEEEEEEES
T ss_pred             hhhcccchHHHHHHHHHHHhhCCCCeEEEE
Confidence            1       3478899999999999999874

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.59  E-value=6.8e-15  Score=122.50  Aligned_cols=96  Identities=18%  Similarity=0.328  Sum_probs=82.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~-  154 (243)
                      +.+|||+|||+|..+..++..  +.+|+|+|+|+.+++.++++.+..+. +++++++|+.+++..    ++||+|++.. 
T Consensus        42 ~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~-~v~~~~~d~~~~~~~----~~fD~v~~~~~  114 (252)
T 1wzn_A           42 VRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNL-KIEFLQGDVLEIAFK----NEFDAVTMFFS  114 (252)
T ss_dssp             CCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC-CCEEEESCGGGCCCC----SCEEEEEECSS
T ss_pred             CCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhcCC-ceEEEECChhhcccC----CCccEEEEcCC
Confidence            679999999999999888865  57999999999999999999988776 599999999987542    6899999752 


Q ss_pred             ------cccHHHHHHHHccCcccCeEEEEE
Q 026122          155 ------VAEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       155 ------~~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                            ..+...+++.+.++|+|||.+++.
T Consensus       115 ~~~~~~~~~~~~~l~~~~~~L~pgG~li~~  144 (252)
T 1wzn_A          115 TIMYFDEEDLRKLFSKVAEALKPGGVFITD  144 (252)
T ss_dssp             GGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             chhcCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence                  125688999999999999998864

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.59  E-value=4.1e-15  Score=120.37  Aligned_cols=101  Identities=11%  Similarity=0.125  Sum_probs=83.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      ++.+|||+|||+|..+..++...+ .+|+|+|+|+.+++.++++...  ..+++++++|+.+++...   ++||+|+++.
T Consensus        42 ~~~~vLdiGcG~G~~~~~l~~~~~-~~v~~~D~s~~~~~~a~~~~~~--~~~i~~~~~d~~~~~~~~---~~fD~v~~~~  115 (215)
T 2pxx_A           42 PEDRILVLGCGNSALSYELFLGGF-PNVTSVDYSSVVVAAMQACYAH--VPQLRWETMDVRKLDFPS---ASFDVVLEKG  115 (215)
T ss_dssp             TTCCEEEETCTTCSHHHHHHHTTC-CCEEEEESCHHHHHHHHHHTTT--CTTCEEEECCTTSCCSCS---SCEEEEEEES
T ss_pred             CCCeEEEECCCCcHHHHHHHHcCC-CcEEEEeCCHHHHHHHHHhccc--CCCcEEEEcchhcCCCCC---CcccEEEECc
Confidence            378999999999999988887643 3899999999999999988653  346899999998875432   6899999864


Q ss_pred             c-------------------ccHHHHHHHHccCcccCeEEEEEeCC
Q 026122          155 V-------------------AEMRILAEYCLPLVRVGGLFVAAKGH  181 (243)
Q Consensus       155 ~-------------------~~~~~~l~~~~~~LkpgG~l~~~~~~  181 (243)
                      .                   .+...+++++.++|+|||.+++....
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~  161 (215)
T 2pxx_A          116 TLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSA  161 (215)
T ss_dssp             HHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             chhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCC
Confidence            2                   24588999999999999999887754

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.59  E-value=5.9e-15  Score=122.69  Aligned_cols=104  Identities=19%  Similarity=0.231  Sum_probs=88.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCC--c--CCCCceE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDV--S--FREQYDV  149 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~--~--~~~~fD~  149 (243)
                      +.+|||||||+|..++.++...| +.+|+++|+|+++++.+++++++.++. +++++++|+.+.....  .  ..++||+
T Consensus        71 ~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~  150 (237)
T 3c3y_A           71 AKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDF  150 (237)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEEE
T ss_pred             CCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcCE
Confidence            67999999999999999998876 789999999999999999999999986 4999999987742210  0  0268999


Q ss_pred             EEEcC-cccHHHHHHHHccCcccCeEEEEEe
Q 026122          150 AVARA-VAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       150 I~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      |++.+ ...+..+++.+.++|+|||.+++..
T Consensus       151 I~~d~~~~~~~~~l~~~~~~L~pGG~lv~d~  181 (237)
T 3c3y_A          151 GFVDADKPNYIKYHERLMKLVKVGGIVAYDN  181 (237)
T ss_dssp             EEECSCGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EEECCchHHHHHHHHHHHHhcCCCeEEEEec
Confidence            99976 4468899999999999999988754

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.59  E-value=7.1e-15  Score=119.66  Aligned_cols=104  Identities=20%  Similarity=0.234  Sum_probs=85.1

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEE
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      .++.+|||+|||+|..+..++... +..+|+++|+|+.+++.++++....++.+++++++|+......   .++||+|++
T Consensus        76 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~---~~~fD~v~~  152 (215)
T 2yxe_A           76 KPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEP---LAPYDRIYT  152 (215)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGG---GCCEEEEEE
T ss_pred             CCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCC---CCCeeEEEE
Confidence            457899999999999999999876 4579999999999999999999998888899999998653321   268999999


Q ss_pred             cCcccHHHHHHHHccCcccCeEEEEEeCCC
Q 026122          153 RAVAEMRILAEYCLPLVRVGGLFVAAKGHD  182 (243)
Q Consensus       153 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  182 (243)
                      .....  .+.+.+.+.|||||++++..+..
T Consensus       153 ~~~~~--~~~~~~~~~L~pgG~lv~~~~~~  180 (215)
T 2yxe_A          153 TAAGP--KIPEPLIRQLKDGGKLLMPVGRY  180 (215)
T ss_dssp             SSBBS--SCCHHHHHTEEEEEEEEEEESSS
T ss_pred             CCchH--HHHHHHHHHcCCCcEEEEEECCC
Confidence            76332  12257889999999999988654

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.59  E-value=1.1e-15  Score=122.23  Aligned_cols=100  Identities=12%  Similarity=0.065  Sum_probs=80.6

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEEE
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      .+..+|||+|||+|.+++.++...|+.+|+|+|+|+.|++.++++++.+|.. ++++  .|..+...    +++||+|++
T Consensus        48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~----~~~~DvVLa  121 (200)
T 3fzg_A           48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVY----KGTYDVVFL  121 (200)
T ss_dssp             CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHT----TSEEEEEEE
T ss_pred             CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCC----CCCcChhhH
Confidence            4478999999999999999988888999999999999999999999999987 5766  55544322    267999999


Q ss_pred             cCc----ccHHHHHHHHccCcccCeEEEEEe
Q 026122          153 RAV----AEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       153 ~~~----~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      ..+    .+.+..+..+.+.|+|||.++-.-
T Consensus       122 ~k~LHlL~~~~~al~~v~~~L~pggvfISfp  152 (200)
T 3fzg_A          122 LKMLPVLKQQDVNILDFLQLFHTQNFVISFP  152 (200)
T ss_dssp             ETCHHHHHHTTCCHHHHHHTCEEEEEEEEEE
T ss_pred             hhHHHhhhhhHHHHHHHHHHhCCCCEEEEeC
Confidence            653    233445557889999999977544

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.59  E-value=1.2e-14  Score=123.66  Aligned_cols=99  Identities=19%  Similarity=0.276  Sum_probs=82.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCC----CCEEEEEccccccc---cCCcCCCCce
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL----LNVQIVRGRAETLG---KDVSFREQYD  148 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~----~~v~~~~~d~~~~~---~~~~~~~~fD  148 (243)
                      +.+|||||||+|..+..++..  +.+|+|+|+|+.+++.++++....+.    .++.+..+|+.+++   ..   .++||
T Consensus        58 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~---~~~fD  132 (293)
T 3thr_A           58 CHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPA---GDGFD  132 (293)
T ss_dssp             CCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCC---TTCEE
T ss_pred             CCEEEEecCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCcccccc---CCCeE
Confidence            689999999999999888876  46999999999999999988755432    35889999998875   33   27899


Q ss_pred             EEEEc-C----ccc-------HHHHHHHHccCcccCeEEEEEe
Q 026122          149 VAVAR-A----VAE-------MRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       149 ~I~~~-~----~~~-------~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      +|++. .    +.+       +..+++++.++|||||++++..
T Consensus       133 ~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  175 (293)
T 3thr_A          133 AVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH  175 (293)
T ss_dssp             EEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence            99996 2    334       8999999999999999998765

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.59  E-value=1.5e-14  Score=118.04  Aligned_cols=125  Identities=17%  Similarity=0.193  Sum_probs=95.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~-  154 (243)
                      +.+|||+|||+|..+..++..  +.+|+|+|+|+.+++.++++.       .+++++|+.+..... .+++||+|++.. 
T Consensus        33 ~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~~~~~~~~~~~~~-------~~~~~~d~~~~~~~~-~~~~fD~v~~~~~  102 (230)
T 3cc8_A           33 WKEVLDIGCSSGALGAAIKEN--GTRVSGIEAFPEAAEQAKEKL-------DHVVLGDIETMDMPY-EEEQFDCVIFGDV  102 (230)
T ss_dssp             CSEEEEETCTTSHHHHHHHTT--TCEEEEEESSHHHHHHHHTTS-------SEEEESCTTTCCCCS-CTTCEEEEEEESC
T ss_pred             CCcEEEeCCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhC-------CcEEEcchhhcCCCC-CCCccCEEEECCh
Confidence            789999999999999888876  489999999999988877542       368889987642211 126899999865 


Q ss_pred             ---cccHHHHHHHHccCcccCeEEEEEeCCC-c--------------------------HHHHHHHHHHHHHhCCeeeEE
Q 026122          155 ---VAEMRILAEYCLPLVRVGGLFVAAKGHD-P--------------------------QEEVKNSERAVQLMGASLLQL  204 (243)
Q Consensus       155 ---~~~~~~~l~~~~~~LkpgG~l~~~~~~~-~--------------------------~~~~~~~~~~l~~~g~~~~~~  204 (243)
                         ..+...+++.+.+.|+|||.+++..... .                          .-...++.+.++++||++++.
T Consensus       103 l~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~  182 (230)
T 3cc8_A          103 LEHLFDPWAVIEKVKPYIKQNGVILASIPNVSHISVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLKAGYSISKV  182 (230)
T ss_dssp             GGGSSCHHHHHHHTGGGEEEEEEEEEEEECTTSHHHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHHHHHHHTTEEEEEE
T ss_pred             hhhcCCHHHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhcCCceeccCCCCCcceEEEecHHHHHHHHHHcCCeEEEE
Confidence               3467899999999999999999865211 0                          012456677788999999888


Q ss_pred             EEEecC
Q 026122          205 CSVESQ  210 (243)
Q Consensus       205 ~~~~~~  210 (243)
                      ..+...
T Consensus       183 ~~~~~~  188 (230)
T 3cc8_A          183 DRVYVD  188 (230)
T ss_dssp             EEEECC
T ss_pred             EecccC
Confidence            776543

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.58  E-value=5.3e-15  Score=122.47  Aligned_cols=104  Identities=17%  Similarity=0.254  Sum_probs=87.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcC-C--CCceEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSF-R--EQYDVA  150 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~-~--~~fD~I  150 (243)
                      +.+|||||||+|..++.++...+ +++|+++|+|+++++.++++++..++. +++++++|+.+....... .  ++||+|
T Consensus        73 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V  152 (232)
T 3cbg_A           73 AKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLI  152 (232)
T ss_dssp             CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEE
T ss_pred             CCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEE
Confidence            67999999999999999998776 689999999999999999999998885 499999998653211000 1  579999


Q ss_pred             EEcCc-ccHHHHHHHHccCcccCeEEEEEe
Q 026122          151 VARAV-AEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       151 ~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      ++.+. .++..+++.+.++|+|||.+++..
T Consensus       153 ~~d~~~~~~~~~l~~~~~~LkpgG~lv~~~  182 (232)
T 3cbg_A          153 FIDADKRNYPRYYEIGLNLLRRGGLMVIDN  182 (232)
T ss_dssp             EECSCGGGHHHHHHHHHHTEEEEEEEEEEC
T ss_pred             EECCCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence            99864 578899999999999999988854

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.58  E-value=1.5e-14  Score=125.32  Aligned_cols=146  Identities=10%  Similarity=0.052  Sum_probs=104.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc--CC--CCEEEEEccccccccCCcCCCCceEEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT--QL--LNVQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~--~~v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      +.+|||||||+|..+..+++..+..+|++||+|+.+++.|+++....  ++  .+++++.+|+.+....  ..++||+|+
T Consensus       109 ~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~--~~~~fD~Ii  186 (314)
T 2b2c_A          109 PKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKN--HKNEFDVII  186 (314)
T ss_dssp             CCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHH--CTTCEEEEE
T ss_pred             CCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHh--cCCCceEEE
Confidence            67999999999999988887666789999999999999999987654  33  4699999999874321  126899999


Q ss_pred             EcCcc------c-H-HHHHHHHccCcccCeEEEEEeCC--CcHHHHHHHHHHHHHhCCeeeEEEEEecCCCCCce-EEEE
Q 026122          152 ARAVA------E-M-RILAEYCLPLVRVGGLFVAAKGH--DPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQR-TAVV  220 (243)
Q Consensus       152 ~~~~~------~-~-~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r-~~v~  220 (243)
                      ++...      . + ..+++.+.++|+|||.+++..+.  ...+.+..+.+.++.. |..........|..+... .+++
T Consensus       187 ~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~v-F~~v~~~~~~iP~~~~g~~g~~~  265 (314)
T 2b2c_A          187 TDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKI-FPAVTYAQSIVSTYPSGSMGYLI  265 (314)
T ss_dssp             ECCC-------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHH-CSEEEEEEEECTTSGGGEEEEEE
T ss_pred             EcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEECCCcccCHHHHHHHHHHHHHH-CCcceEEEEEecCcCCCceEEEE
Confidence            97632      1 1 68899999999999999987643  2344555556666555 555555555556544444 4666


Q ss_pred             EEee
Q 026122          221 CLKS  224 (243)
Q Consensus       221 ~~k~  224 (243)
                      +.|.
T Consensus       266 ask~  269 (314)
T 2b2c_A          266 CAKN  269 (314)
T ss_dssp             EESS
T ss_pred             EeCC
Confidence            6554

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.58  E-value=5.4e-15  Score=121.47  Aligned_cols=104  Identities=20%  Similarity=0.259  Sum_probs=86.1

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHC-----CCCEEEEEeCCHHHHHHHHHHHHHcC-----CCCEEEEEccccccc----
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIAC-----PDWKVTLLESMNKRCVFLEHAVSLTQ-----LLNVQIVRGRAETLG----  138 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~-----~~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~v~~~~~d~~~~~----  138 (243)
                      ++++.+|||||||+|..+..++...     +..+|+++|+++.+++.++++.+..+     ..+++++++|+.+..    
T Consensus        78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  157 (227)
T 2pbf_A           78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK  157 (227)
T ss_dssp             SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccC
Confidence            3558899999999999999999875     45799999999999999999999887     567999999998753    


Q ss_pred             cCCcCCCCceEEEEcCcccHHHHHHHHccCcccCeEEEEEeCC
Q 026122          139 KDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGH  181 (243)
Q Consensus       139 ~~~~~~~~fD~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  181 (243)
                      ..   .++||+|++.....  .+++.+.+.|+|||++++..+.
T Consensus       158 ~~---~~~fD~I~~~~~~~--~~~~~~~~~LkpgG~lv~~~~~  195 (227)
T 2pbf_A          158 KE---LGLFDAIHVGASAS--ELPEILVDLLAENGKLIIPIEE  195 (227)
T ss_dssp             HH---HCCEEEEEECSBBS--SCCHHHHHHEEEEEEEEEEEEE
T ss_pred             cc---CCCcCEEEECCchH--HHHHHHHHhcCCCcEEEEEEcc
Confidence            22   26899999976432  3457788999999999987754

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.58  E-value=2e-15  Score=124.12  Aligned_cols=104  Identities=25%  Similarity=0.281  Sum_probs=87.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCC-CCEEEEEccccccccCCcC---CCCceEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSF---REQYDVA  150 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~---~~~fD~I  150 (243)
                      +.+|||||||+|..++.++...+ +.+|+++|+++.+++.++++++..++ .+++++++|+.+.......   .++||+|
T Consensus        70 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v  149 (229)
T 2avd_A           70 AKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVA  149 (229)
T ss_dssp             CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEE
T ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccEE
Confidence            78999999999999999998766 68999999999999999999999988 4699999998764211000   1579999


Q ss_pred             EEcC-cccHHHHHHHHccCcccCeEEEEEe
Q 026122          151 VARA-VAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       151 ~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      +++. ...+..+++.+.++|+|||.+++..
T Consensus       150 ~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~  179 (229)
T 2avd_A          150 VVDADKENCSAYYERCLQLLRPGGILAVLR  179 (229)
T ss_dssp             EECSCSTTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EECCCHHHHHHHHHHHHHHcCCCeEEEEEC
Confidence            9976 4567889999999999999988854

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.58  E-value=4.4e-14  Score=118.09  Aligned_cols=131  Identities=13%  Similarity=0.152  Sum_probs=89.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEcccccc-ccCCcC--CCCceEEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETL-GKDVSF--REQYDVAV  151 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~-~~~~~~--~~~fD~I~  151 (243)
                      +.+|||+|||+|.+++.++...++.+|+|+|+|+.+++.|+++++.+++.+ ++++++|+.+. ......  +++||+|+
T Consensus        66 ~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i~  145 (254)
T 2h00_A           66 LRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFCM  145 (254)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEEE
T ss_pred             CCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEEE
Confidence            679999999999999889887777899999999999999999999999865 99999998762 111010  14799999


Q ss_pred             EcCc----c---------------cHHHHHHHHccCc--------------------ccCeEEEEEeCCCcHHHHHHHHH
Q 026122          152 ARAV----A---------------EMRILAEYCLPLV--------------------RVGGLFVAAKGHDPQEEVKNSER  192 (243)
Q Consensus       152 ~~~~----~---------------~~~~~l~~~~~~L--------------------kpgG~l~~~~~~~~~~~~~~~~~  192 (243)
                      ++..    .               +...++..+.++|                    +++|.+....+....  +.++.+
T Consensus       146 ~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~~~~~~~l~~~g~~~~~~~~~~~--~~~~~~  223 (254)
T 2h00_A          146 CNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGKKCS--LAPLKE  223 (254)
T ss_dssp             ECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEESSTTS--HHHHHH
T ss_pred             ECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHHHHHHhcccceEEEEECCCChhH--HHHHHH
Confidence            9720    0               0112333444444                    455554444443332  244566


Q ss_pred             HHHHhCCeeeEEEEEe
Q 026122          193 AVQLMGASLLQLCSVE  208 (243)
Q Consensus       193 ~l~~~g~~~~~~~~~~  208 (243)
                      .+++.||..++...+.
T Consensus       224 ~l~~~Gf~~v~~~~~~  239 (254)
T 2h00_A          224 ELRIQGVPKVTYTEFC  239 (254)
T ss_dssp             HHHHTTCSEEEEEEEE
T ss_pred             HHHHcCCCceEEEEEe
Confidence            7779999877766544

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.58  E-value=1.2e-14  Score=123.90  Aligned_cols=129  Identities=16%  Similarity=0.062  Sum_probs=91.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeC-CHHHHHHHHHHH-----HHcCCC-----CEEEEEccccccccCCc--
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLES-MNKRCVFLEHAV-----SLTQLL-----NVQIVRGRAETLGKDVS--  142 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~-s~~~~~~a~~~~-----~~~~~~-----~v~~~~~d~~~~~~~~~--  142 (243)
                      +.+|||+|||+|.+++.+++. +..+|+|+|+ |+.+++.+++++     +.+++.     ++++...++.+......  
T Consensus        80 ~~~vLDlG~G~G~~~~~~a~~-~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  158 (281)
T 3bzb_A           80 GKTVCELGAGAGLVSIVAFLA-GADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQRC  158 (281)
T ss_dssp             TCEEEETTCTTSHHHHHHHHT-TCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHHH
T ss_pred             CCeEEEecccccHHHHHHHHc-CCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHhh
Confidence            789999999999999888865 3459999999 899999999999     555553     68888666544211000  


Q ss_pred             -CCCCceEEEEcC----cccHHHHHHHHccCcc---c--CeEEEEEeCCCc---HHHHHHHHHHHHHhC-CeeeEEE
Q 026122          143 -FREQYDVAVARA----VAEMRILAEYCLPLVR---V--GGLFVAAKGHDP---QEEVKNSERAVQLMG-ASLLQLC  205 (243)
Q Consensus       143 -~~~~fD~I~~~~----~~~~~~~l~~~~~~Lk---p--gG~l~~~~~~~~---~~~~~~~~~~l~~~g-~~~~~~~  205 (243)
                       ..++||+|++..    ......+++.+.++|+   |  ||.+++......   .....++.+.+++.| |.+..+.
T Consensus       159 ~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~~~~~~~~~~~~~l~~~G~f~v~~~~  235 (281)
T 3bzb_A          159 TGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVTFTHHRPHLAERDLAFFRLVNADGALIAEPWL  235 (281)
T ss_dssp             HSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEEECC--------CTHHHHHHHHSTTEEEEEEE
T ss_pred             ccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEEEEEeeecccchhHHHHHHHHHhcCCEEEEEec
Confidence             126899999854    3468899999999999   9  999877654322   122355667778999 9887763

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.58  E-value=1.2e-14  Score=120.69  Aligned_cols=101  Identities=15%  Similarity=0.116  Sum_probs=81.6

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcC--CCCceEEE
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSF--REQYDVAV  151 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~--~~~fD~I~  151 (243)
                      .++.+|||+|||+|..+..++...+  +|+|+|+|+.+++.++++.   ...+++++++|+.+.......  ...||+|+
T Consensus        55 ~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~  129 (245)
T 3ggd_A           55 NPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKEN---TAANISYRLLDGLVPEQAAQIHSEIGDANIY  129 (245)
T ss_dssp             CTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHS---CCTTEEEEECCTTCHHHHHHHHHHHCSCEEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhC---cccCceEEECcccccccccccccccCccEEE
Confidence            4478999999999999999998754  8999999999999998865   334799999999886532100  12499999


Q ss_pred             EcC----cc--cHHHHHHHHccCcccCeEEEEEe
Q 026122          152 ARA----VA--EMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       152 ~~~----~~--~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      ++.    ..  +...+++++.++|||||.+++..
T Consensus       130 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  163 (245)
T 3ggd_A          130 MRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIE  163 (245)
T ss_dssp             EESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEE
T ss_pred             EcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence            975    22  67899999999999999987765

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.58  E-value=5.7e-15  Score=122.56  Aligned_cols=104  Identities=21%  Similarity=0.234  Sum_probs=87.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccccccCCc-----------
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVS-----------  142 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~-----------  142 (243)
                      +.+|||||||+|..+..++...+ +.+|+++|+++.+++.++++++..++.+ ++++++|+.+......           
T Consensus        61 ~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~  140 (239)
T 2hnk_A           61 AKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASD  140 (239)
T ss_dssp             CSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGTT
T ss_pred             cCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccccccc
Confidence            78999999999999999998876 6899999999999999999999998865 9999999876321000           


Q ss_pred             C--C-CCceEEEEcC-cccHHHHHHHHccCcccCeEEEEEe
Q 026122          143 F--R-EQYDVAVARA-VAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       143 ~--~-~~fD~I~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      +  . ++||+|++.. ...+..+++.+.+.|+|||.+++..
T Consensus       141 f~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~  181 (239)
T 2hnk_A          141 FAFGPSSIDLFFLDADKENYPNYYPLILKLLKPGGLLIADN  181 (239)
T ss_dssp             TCCSTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             ccCCCCCcCEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEEc
Confidence            0  1 5799999976 4567899999999999999998865

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.58  E-value=2.6e-14  Score=124.18  Aligned_cols=136  Identities=15%  Similarity=0.134  Sum_probs=104.7

Q ss_pred             CeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCEEEEEccccccccCCcCCCCceEEEEcCc
Q 026122           77 LKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAVARAV  155 (243)
Q Consensus        77 ~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~  155 (243)
                      .+|||+|||+|..+..++..+|+.+++++|+ +.+++.++++....++ .+++++.+|+.+ +.    +++||+|+++.+
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~----~~~~D~v~~~~v  242 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EV----PSNGDIYLLSRI  242 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CC----CSSCSEEEEESC
T ss_pred             CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CC----CCCCCEEEEchh
Confidence            7999999999999999999999999999999 9999999998877765 359999999987 32    257999999753


Q ss_pred             c----c--HHHHHHHHccCcccCeEEEEEeCC-----CcH-----------------HHHHHHHHHHHHhCCeeeEEEEE
Q 026122          156 A----E--MRILAEYCLPLVRVGGLFVAAKGH-----DPQ-----------------EEVKNSERAVQLMGASLLQLCSV  207 (243)
Q Consensus       156 ~----~--~~~~l~~~~~~LkpgG~l~~~~~~-----~~~-----------------~~~~~~~~~l~~~g~~~~~~~~~  207 (243)
                      .    +  ...+++.+.+.|+|||++++....     ...                 ....++.+.++++||..+++...
T Consensus       243 l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~  322 (334)
T 2ip2_A          243 IGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMACAGRHRTTEEVVDLLGRGGFAVERIVDL  322 (334)
T ss_dssp             GGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEEEE
T ss_pred             ccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHhHhhCCCcCCCHHHHHHHHHHCCCceeEEEEC
Confidence            2    2  348999999999999999987521     100                 02345677788999988877542


Q ss_pred             ecCCCCCceEEEEEEe
Q 026122          208 ESQSPFGQRTAVVCLK  223 (243)
Q Consensus       208 ~~~~~~~~r~~v~~~k  223 (243)
                           .....++.+.|
T Consensus       323 -----~~~~~~i~~~~  333 (334)
T 2ip2_A          323 -----PMETRMIVAAR  333 (334)
T ss_dssp             -----TTTEEEEEEEE
T ss_pred             -----CCCCEEEEEEe
Confidence                 22345555544

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.58  E-value=2.8e-14  Score=121.75  Aligned_cols=146  Identities=14%  Similarity=0.057  Sum_probs=106.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC----CCCEEEEEccccccccCCcCCCCceEEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ----LLNVQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      +.+|||||||+|..+..+++..+..+|++||+|+.+++.++++....+    ..+++++++|+.+.....  .++||+|+
T Consensus        79 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~--~~~fD~Ii  156 (283)
T 2i7c_A           79 PKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV--TNTYDVII  156 (283)
T ss_dssp             CCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC--CSCEEEEE
T ss_pred             CCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhC--CCCceEEE
Confidence            679999999999999888876667899999999999999999876542    346999999998753211  36899999


Q ss_pred             EcCcc------cH--HHHHHHHccCcccCeEEEEEeCC--CcHHHHHHHHHHHHHhCCeeeEEEEEecCCCCCce-EEEE
Q 026122          152 ARAVA------EM--RILAEYCLPLVRVGGLFVAAKGH--DPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQR-TAVV  220 (243)
Q Consensus       152 ~~~~~------~~--~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r-~~v~  220 (243)
                      ++...      .+  .++++.+.+.|+|||.+++..+.  ...+.+..+.+.+++. |..........|.-++.. ..++
T Consensus       157 ~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~v~~~~~~vP~y~~g~~g~~~  235 (283)
T 2i7c_A          157 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKL-FKKVEYANISIPTYPCGCIGILC  235 (283)
T ss_dssp             EECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTT-CSEEEEEEEECTTSGGGEEEEEE
T ss_pred             EcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECCCcccCHHHHHHHHHHHHHH-CCceEEEEEEcCCcCCCcEEEEE
Confidence            96421      22  68999999999999999887542  2345556666666654 555555555556544443 4555


Q ss_pred             EEee
Q 026122          221 CLKS  224 (243)
Q Consensus       221 ~~k~  224 (243)
                      +.|.
T Consensus       236 ~s~~  239 (283)
T 2i7c_A          236 CSKT  239 (283)
T ss_dssp             EESS
T ss_pred             EeCC
Confidence            5544

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.58  E-value=1.7e-14  Score=128.10  Aligned_cols=128  Identities=20%  Similarity=0.166  Sum_probs=98.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC-cCCCCceEEEEc
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-SFREQYDVAVAR  153 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-~~~~~fD~I~~~  153 (243)
                      ++.+|||+|||+|..++.+|..  +.+|+|+|+|+.+++.++++++.+++.+++++++|+.++.... ...++||+|+++
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~d  286 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD  286 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence            4779999999999999999977  5799999999999999999999999988999999998764310 002689999996


Q ss_pred             Cc-------------ccHHHHHHHHccCcccCeEEEEEeCCCc--HHHHHH-HHHHHHHhCCeeeEE
Q 026122          154 AV-------------AEMRILAEYCLPLVRVGGLFVAAKGHDP--QEEVKN-SERAVQLMGASLLQL  204 (243)
Q Consensus       154 ~~-------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~--~~~~~~-~~~~l~~~g~~~~~~  204 (243)
                      ..             ..+..++..+.++|+|||.+++......  .....+ +.+.+.+.|.....+
T Consensus       287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~i  353 (382)
T 1wxx_A          287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHRLLRVV  353 (382)
T ss_dssp             CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence            41             3467889999999999999998875432  222222 334556666544433

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.58  E-value=8.7e-15  Score=132.47  Aligned_cols=130  Identities=15%  Similarity=0.128  Sum_probs=100.9

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEE
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      ..++.+|||+|||+|..++.+|...+ .++|+++|+|+.+++.++++++++|+.|+.++++|..++...  .+++||+|+
T Consensus       103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~--~~~~FD~Il  180 (456)
T 3m4x_A          103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPH--FSGFFDRIV  180 (456)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHH--HTTCEEEEE
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhh--ccccCCEEE
Confidence            35688999999999999999987654 479999999999999999999999998999999999887531  126899999


Q ss_pred             EcCc----c----------------------cHHHHHHHHccCcccCeEEEEEeCCCcHHHH-HHHHHHHHHhCCeeeEE
Q 026122          152 ARAV----A----------------------EMRILAEYCLPLVRVGGLFVAAKGHDPQEEV-KNSERAVQLMGASLLQL  204 (243)
Q Consensus       152 ~~~~----~----------------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~-~~~~~~l~~~g~~~~~~  204 (243)
                      +++.    .                      ....+++.+.++|||||++++..+....+|- ..+...++++++.++.+
T Consensus       181 ~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~~l~~~~~~l~~~  260 (456)
T 3m4x_A          181 VDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAPEENEEIISWLVENYPVTIEEI  260 (456)
T ss_dssp             EECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSEEEECC
T ss_pred             ECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecccccCHHHHHHHHHhCCCEEEec
Confidence            8642    0                      1237899999999999999987765433332 23345556777665543

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.58  E-value=1e-14  Score=129.46  Aligned_cols=102  Identities=18%  Similarity=0.250  Sum_probs=88.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      ++.+|||+|||+|.+++.++..  +.+|+++|+|+.+++.++++++.+++. ++++++|+.+....   .++||+|+++.
T Consensus       233 ~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~~~~-v~~~~~D~~~~~~~---~~~fD~Ii~np  306 (381)
T 3dmg_A          233 RGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEANALK-AQALHSDVDEALTE---EARFDIIVTNP  306 (381)
T ss_dssp             TTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHTTCC-CEEEECSTTTTSCT---TCCEEEEEECC
T ss_pred             CCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEcchhhcccc---CCCeEEEEECC
Confidence            3779999999999999999876  579999999999999999999998875 89999999987543   26899999973


Q ss_pred             ---------cccHHHHHHHHccCcccCeEEEEEeCCC
Q 026122          155 ---------VAEMRILAEYCLPLVRVGGLFVAAKGHD  182 (243)
Q Consensus       155 ---------~~~~~~~l~~~~~~LkpgG~l~~~~~~~  182 (243)
                               ......+++.+.+.|+|||.+++.....
T Consensus       307 p~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~  343 (381)
T 3dmg_A          307 PFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNPF  343 (381)
T ss_dssp             CCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTT
T ss_pred             chhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcCC
Confidence                     2356889999999999999999987654

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.58  E-value=9.9e-15  Score=119.78  Aligned_cols=105  Identities=20%  Similarity=0.222  Sum_probs=85.7

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcC-----CCCEEEEEccccccccCCcCCCC
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQ-----LLNVQIVRGRAETLGKDVSFREQ  146 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~~~~  146 (243)
                      ++++.+|||+|||+|..+..++... +..+|+++|+++.+++.++++.+..+     ..+++++++|+.+....   .++
T Consensus        75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~  151 (226)
T 1i1n_A           75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAE---EAP  151 (226)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGG---GCC
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCccc---CCC
Confidence            4558899999999999999998774 45799999999999999999998866     35799999999865432   268


Q ss_pred             ceEEEEcCcccHHHHHHHHccCcccCeEEEEEeCCC
Q 026122          147 YDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHD  182 (243)
Q Consensus       147 fD~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  182 (243)
                      ||+|++....  ..+++.+.+.|||||.+++..+..
T Consensus       152 fD~i~~~~~~--~~~~~~~~~~LkpgG~lv~~~~~~  185 (226)
T 1i1n_A          152 YDAIHVGAAA--PVVPQALIDQLKPGGRLILPVGPA  185 (226)
T ss_dssp             EEEEEECSBB--SSCCHHHHHTEEEEEEEEEEESCT
T ss_pred             cCEEEECCch--HHHHHHHHHhcCCCcEEEEEEecC
Confidence            9999997643  334567889999999999987653

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.58  E-value=3.1e-14  Score=126.98  Aligned_cols=132  Identities=14%  Similarity=0.152  Sum_probs=101.5

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCC-C-CEEEEEccccccccCC-cCCCCceEE
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL-L-NVQIVRGRAETLGKDV-SFREQYDVA  150 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~-~v~~~~~d~~~~~~~~-~~~~~fD~I  150 (243)
                      .++.+|||+|||+|..++.+|.. ...+|+|+|+|+.+++.+++|++.+++ . +++++++|+.+..... ....+||+|
T Consensus       219 ~~~~~VLDl~cG~G~~sl~la~~-g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~I  297 (396)
T 3c0k_A          219 VENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI  297 (396)
T ss_dssp             CTTCEEEEESCTTCSHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             hCCCeEEEeeccCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEE
Confidence            45789999999999999998875 356999999999999999999999998 6 7999999998863210 002579999


Q ss_pred             EEcCc-------------ccHHHHHHHHccCcccCeEEEEEeCCCc--HHHHHHH-HHHHHHhCCeeeEEEE
Q 026122          151 VARAV-------------AEMRILAEYCLPLVRVGGLFVAAKGHDP--QEEVKNS-ERAVQLMGASLLQLCS  206 (243)
Q Consensus       151 ~~~~~-------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~--~~~~~~~-~~~l~~~g~~~~~~~~  206 (243)
                      +++..             ..+..++..+.+.|+|||.+++......  .++..+. .+.+.+.|.....+..
T Consensus       298 i~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~i~~  369 (396)
T 3c0k_A          298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFIEQ  369 (396)
T ss_dssp             EECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred             EECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEEEE
Confidence            99731             3578899999999999999998875432  2233333 3467788876655443

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.57  E-value=1.1e-14  Score=130.93  Aligned_cols=106  Identities=19%  Similarity=0.161  Sum_probs=84.9

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHH-------HHHHHHcC--CCCEEEEEcccccc--ccCC
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFL-------EHAVSLTQ--LLNVQIVRGRAETL--GKDV  141 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a-------~~~~~~~~--~~~v~~~~~d~~~~--~~~~  141 (243)
                      +.++.+|||||||+|.+++.+|...+..+|+|||+++.+++.|       +++++..|  ..+++++++|....  ... 
T Consensus       240 l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~~~~-  318 (433)
T 1u2z_A          240 LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVA-  318 (433)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHH-
T ss_pred             CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCccccccccc-
Confidence            3458899999999999999999877767999999999999988       88888888  56899998754321  100 


Q ss_pred             cCCCCceEEEEcC---cccHHHHHHHHccCcccCeEEEEEe
Q 026122          142 SFREQYDVAVARA---VAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       142 ~~~~~fD~I~~~~---~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      ...++||+|+++.   ..++...++++.+.|||||++++..
T Consensus       319 ~~~~~FDvIvvn~~l~~~d~~~~L~el~r~LKpGG~lVi~d  359 (433)
T 1u2z_A          319 ELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLK  359 (433)
T ss_dssp             HHGGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             cccCCCCEEEEeCccccccHHHHHHHHHHhCCCCeEEEEee
Confidence            0015799999964   2467788899999999999988864

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.57  E-value=6.4e-14  Score=124.05  Aligned_cols=125  Identities=15%  Similarity=0.118  Sum_probs=97.9

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCEEEEEccccccccCCcCCCCceEEEE
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      .++.+|||+|||+|.+++.++...+.++|+|+|+|+.+++.|+++++.+++ .+++++++|+.+++...   ++||+|++
T Consensus       216 ~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~---~~fD~Ii~  292 (373)
T 3tm4_A          216 LDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYV---DSVDFAIS  292 (373)
T ss_dssp             CCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTC---SCEEEEEE
T ss_pred             CCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCccc---CCcCEEEE
Confidence            457899999999999999999876556999999999999999999999998 46999999999987542   68999999


Q ss_pred             cCc-----------cc-HHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEEEe
Q 026122          153 RAV-----------AE-MRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVE  208 (243)
Q Consensus       153 ~~~-----------~~-~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~  208 (243)
                      +..           .. +..+++.+.++|  ||.++++.+.  .   ..+.+.+.+.|+...+...+.
T Consensus       293 npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~~--~---~~~~~~~~~~G~~~~~~~~~~  353 (373)
T 3tm4_A          293 NLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITTE--K---KAIEEAIAENGFEIIHHRVIG  353 (373)
T ss_dssp             ECCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEESC--H---HHHHHHHHHTTEEEEEEEEEE
T ss_pred             CCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEECC--H---HHHHHHHHHcCCEEEEEEEEE
Confidence            731           11 367888888888  5665655542  2   233456678999887766544

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.57  E-value=8.1e-15  Score=126.94  Aligned_cols=103  Identities=18%  Similarity=0.252  Sum_probs=85.2

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEE
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      +++.+|||||||+|..+..++...+ +.+|+|+|+|+++++.++++++..++.+++++++|+.+....   .++||+|++
T Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~---~~~fD~Iv~  150 (317)
T 1dl5_A           74 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPE---FSPYDVIFV  150 (317)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG---GCCEEEEEE
T ss_pred             CCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhcccc---CCCeEEEEE
Confidence            4588999999999999999998765 478999999999999999999999988899999999885432   268999999


Q ss_pred             cCcccHHHHHHHHccCcccCeEEEEEeCC
Q 026122          153 RAVAEMRILAEYCLPLVRVGGLFVAAKGH  181 (243)
Q Consensus       153 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  181 (243)
                      .....  .+.+.+.+.|||||++++..+.
T Consensus       151 ~~~~~--~~~~~~~~~LkpgG~lvi~~~~  177 (317)
T 1dl5_A          151 TVGVD--EVPETWFTQLKEGGRVIVPINL  177 (317)
T ss_dssp             CSBBS--CCCHHHHHHEEEEEEEEEEBCB
T ss_pred             cCCHH--HHHHHHHHhcCCCcEEEEEECC
Confidence            76331  1125677899999999987643

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.57  E-value=1.6e-14  Score=118.12  Aligned_cols=117  Identities=16%  Similarity=0.218  Sum_probs=92.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~-  154 (243)
                      +.+|||+|||+|..+..++..      +|+|+|+.+++.++++       +++++++|+.+++..   .++||+|++.. 
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~---~~~fD~v~~~~~  111 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR-------GVFVLKGTAENLPLK---DESFDFALMVTT  111 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT-------TCEEEECBTTBCCSC---TTCEEEEEEESC
T ss_pred             CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc-------CCEEEEcccccCCCC---CCCeeEEEEcch
Confidence            679999999999998766532      9999999999988776       578999999887643   26899999975 


Q ss_pred             ---cccHHHHHHHHccCcccCeEEEEEeCCC-cH--------------------HHHHHHHHHHHHhCCeeeEEEEEe
Q 026122          155 ---VAEMRILAEYCLPLVRVGGLFVAAKGHD-PQ--------------------EEVKNSERAVQLMGASLLQLCSVE  208 (243)
Q Consensus       155 ---~~~~~~~l~~~~~~LkpgG~l~~~~~~~-~~--------------------~~~~~~~~~l~~~g~~~~~~~~~~  208 (243)
                         ..+...+++.+.+.|+|||.+++..... ..                    -...++.+.++++||++++.....
T Consensus       112 l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~~  189 (219)
T 1vlm_A          112 ICFVDDPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQTL  189 (219)
T ss_dssp             GGGSSCHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEEEC
T ss_pred             HhhccCHHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEEeccc
Confidence               3468899999999999999999875221 10                    123566777889999998877644

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.57  E-value=7.1e-14  Score=124.49  Aligned_cols=131  Identities=16%  Similarity=0.070  Sum_probs=98.1

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEE
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      .+++.+|||+|||+|..++.+|..  +++|+++|+|+.+++.+++|++.+++. .++.++|+.+.....  .+.||+|++
T Consensus       212 ~~~g~~VLDlg~GtG~~sl~~a~~--ga~V~avDis~~al~~a~~n~~~ng~~-~~~~~~D~~~~l~~~--~~~fD~Ii~  286 (393)
T 4dmg_A          212 VRPGERVLDVYSYVGGFALRAARK--GAYALAVDKDLEALGVLDQAALRLGLR-VDIRHGEALPTLRGL--EGPFHHVLL  286 (393)
T ss_dssp             CCTTCEEEEESCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCC-CEEEESCHHHHHHTC--CCCEEEEEE
T ss_pred             hcCCCeEEEcccchhHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHhCCC-CcEEEccHHHHHHHh--cCCCCEEEE
Confidence            345889999999999999998875  456999999999999999999999986 356799998764321  245999999


Q ss_pred             cCc-------------ccHHHHHHHHccCcccCeEEEEEeCCCc--HHHHH-HHHHHHHHhCCeeeEEEEEe
Q 026122          153 RAV-------------AEMRILAEYCLPLVRVGGLFVAAKGHDP--QEEVK-NSERAVQLMGASLLQLCSVE  208 (243)
Q Consensus       153 ~~~-------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~--~~~~~-~~~~~l~~~g~~~~~~~~~~  208 (243)
                      +..             ..+..+++.+.++|+|||.+++......  .++.. .+.+.+.+.|.....+....
T Consensus       287 dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~~~~~~f~~~v~~a~~~~g~~~~i~~~~~  358 (393)
T 4dmg_A          287 DPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYHLRLEDLLEVARRAAADLGRRLRVHRVTY  358 (393)
T ss_dssp             CCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHHTCCEEEEEEEE
T ss_pred             CCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEEEcC
Confidence            742             2467899999999999999987664322  33333 34455667777665554433

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.57  E-value=2.1e-14  Score=131.04  Aligned_cols=97  Identities=19%  Similarity=0.253  Sum_probs=82.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      +.+|||||||+|.+++.+++ .+..+|+|+|+|+ +++.|+++++.+++ .+++++.+|+.++...    ++||+|+++.
T Consensus       159 ~~~VLDiGcGtG~la~~la~-~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~----~~fD~Ivs~~  232 (480)
T 3b3j_A          159 DKIVLDVGCGSGILSFFAAQ-AGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP----EQVDIIISEP  232 (480)
T ss_dssp             TCEEEEESCSTTHHHHHHHH-TTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS----SCEEEEECCC
T ss_pred             CCEEEEecCcccHHHHHHHH-cCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCccC----CCeEEEEEeC
Confidence            78999999999999988886 4677999999998 99999999999998 4699999999986532    6899999976


Q ss_pred             c------ccHHHHHHHHccCcccCeEEEEE
Q 026122          155 V------AEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       155 ~------~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                      .      ......+..+.++|||||.+++.
T Consensus       233 ~~~~~~~e~~~~~l~~~~~~LkpgG~li~~  262 (480)
T 3b3j_A          233 MGYMLFNERMLESYLHAKKYLKPSGNMFPT  262 (480)
T ss_dssp             CHHHHTCHHHHHHHHHGGGGEEEEEEEESC
T ss_pred             chHhcCcHHHHHHHHHHHHhcCCCCEEEEE
Confidence            3      23456677889999999998853

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.57  E-value=2e-14  Score=125.20  Aligned_cols=96  Identities=18%  Similarity=0.228  Sum_probs=82.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      +.+|||||||+|.+++.+++. +..+|+|+|+| .+++.++++++.+++. +++++++|+.++....   ++||+|+++.
T Consensus        39 ~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~---~~~D~Ivs~~  113 (328)
T 1g6q_1           39 DKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHLPF---PKVDIIISEW  113 (328)
T ss_dssp             TCEEEEETCTTSHHHHHHHHT-CCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCCSS---SCEEEEEECC
T ss_pred             CCEEEEecCccHHHHHHHHHC-CCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccCCC---CcccEEEEeC
Confidence            789999999999999888865 55699999999 5999999999999985 4999999999876432   6899999963


Q ss_pred             -------cccHHHHHHHHccCcccCeEEE
Q 026122          155 -------VAEMRILAEYCLPLVRVGGLFV  176 (243)
Q Consensus       155 -------~~~~~~~l~~~~~~LkpgG~l~  176 (243)
                             ...+..+++.+.++|+|||.++
T Consensus       114 ~~~~l~~~~~~~~~l~~~~~~LkpgG~li  142 (328)
T 1g6q_1          114 MGYFLLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             CBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             chhhcccHHHHHHHHHHHHhhcCCCeEEE
Confidence                   2247889999999999999987

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.57  E-value=1.1e-14  Score=122.73  Aligned_cols=97  Identities=15%  Similarity=0.090  Sum_probs=73.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcccccccc--CCcCCCCceEEEE
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK--DVSFREQYDVAVA  152 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--~~~~~~~fD~I~~  152 (243)
                      ++.+|||||||+|.+++.++..  +.+|+|+|+|+.|++.++++++..      +++.++.++..  .....++||+|++
T Consensus        45 ~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~~~~~~------~v~~~~~~~~~~~~~~~~~~fD~Vv~  116 (261)
T 3iv6_A           45 PGSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLAEALADR------CVTIDLLDITAEIPKELAGHFDFVLN  116 (261)
T ss_dssp             TTCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTSSS------CCEEEECCTTSCCCGGGTTCCSEEEE
T ss_pred             CcCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhc------cceeeeeecccccccccCCCccEEEE
Confidence            4789999999999999999865  579999999999999999887644      22333333322  1111368999999


Q ss_pred             cCc------ccHHHHHHHHccCcccCeEEEEEeC
Q 026122          153 RAV------AEMRILAEYCLPLVRVGGLFVAAKG  180 (243)
Q Consensus       153 ~~~------~~~~~~l~~~~~~LkpgG~l~~~~~  180 (243)
                      +..      .+...+++.+.++| |||++++...
T Consensus       117 ~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~  149 (261)
T 3iv6_A          117 DRLINRFTTEEARRACLGMLSLV-GSGTVRASVK  149 (261)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred             hhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEec
Confidence            752      24677899999999 9999998763

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.56  E-value=1.3e-14  Score=125.09  Aligned_cols=103  Identities=6%  Similarity=-0.027  Sum_probs=77.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC------CEEEEEccc------cccccCCcC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL------NVQIVRGRA------ETLGKDVSF  143 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~------~v~~~~~d~------~~~~~~~~~  143 (243)
                      +.+|||||||+|.....++.. +..+|+|+|+|+.|++.|++.....+..      ++++.+.|+      .++... ..
T Consensus        49 ~~~VLDlGCG~G~~l~~~~~~-~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~-~~  126 (302)
T 2vdw_A           49 KRKVLAIDFGNGADLEKYFYG-EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREV-FY  126 (302)
T ss_dssp             CCEEEETTCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTT-CC
T ss_pred             CCeEEEEecCCcHhHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcc-cc
Confidence            789999999999765555543 4579999999999999999988776543      267888887      333211 01


Q ss_pred             CCCceEEEEcCc-------ccHHHHHHHHccCcccCeEEEEEeC
Q 026122          144 REQYDVAVARAV-------AEMRILAEYCLPLVRVGGLFVAAKG  180 (243)
Q Consensus       144 ~~~fD~I~~~~~-------~~~~~~l~~~~~~LkpgG~l~~~~~  180 (243)
                      .++||+|+|...       .+...+++++.++|||||.+++...
T Consensus       127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~  170 (302)
T 2vdw_A          127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTM  170 (302)
T ss_dssp             SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            268999998531       2568999999999999999987653

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.56  E-value=1.2e-14  Score=117.81  Aligned_cols=91  Identities=21%  Similarity=0.213  Sum_probs=77.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCC-EEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDW-KVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      +.+|||+|||+|..+..+     +. +|+|+|+|+.+++.++++.     .+++++++|+.+++...   ++||+|++..
T Consensus        37 ~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~~~---~~fD~v~~~~  103 (211)
T 2gs9_A           37 GESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRA-----PEATWVRAWGEALPFPG---ESFDVVLLFT  103 (211)
T ss_dssp             CSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHC-----TTSEEECCCTTSCCSCS---SCEEEEEEES
T ss_pred             CCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhC-----CCcEEEEcccccCCCCC---CcEEEEEEcC
Confidence            789999999999887555     45 9999999999999888775     46899999998876532   6899999975


Q ss_pred             ----cccHHHHHHHHccCcccCeEEEEEe
Q 026122          155 ----VAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       155 ----~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                          ..+...+++++.++|||||.+++..
T Consensus       104 ~l~~~~~~~~~l~~~~~~L~pgG~l~i~~  132 (211)
T 2gs9_A          104 TLEFVEDVERVLLEARRVLRPGGALVVGV  132 (211)
T ss_dssp             CTTTCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhhhcCCHHHHHHHHHHHcCCCCEEEEEe
Confidence                3478999999999999999999876

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.55  E-value=1.6e-14  Score=119.58  Aligned_cols=104  Identities=20%  Similarity=0.365  Sum_probs=83.7

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEE
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      +.++.+|||+|||+|..+..++...+ .+|+++|+++.+++.++++.+..++.+++++.+|+.. ....  ..+||+|++
T Consensus        89 ~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~~~~--~~~fD~Ii~  164 (235)
T 1jg1_A           89 LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSK-GFPP--KAPYDVIIV  164 (235)
T ss_dssp             CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGG-CCGG--GCCEEEEEE
T ss_pred             CCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCccc-CCCC--CCCccEEEE
Confidence            34578999999999999999998876 8999999999999999999999998889999999732 2211  146999999


Q ss_pred             cCcccHHHHHHHHccCcccCeEEEEEeCCC
Q 026122          153 RAVAEMRILAEYCLPLVRVGGLFVAAKGHD  182 (243)
Q Consensus       153 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  182 (243)
                      .....  .+.+.+.+.|+|||++++..+..
T Consensus       165 ~~~~~--~~~~~~~~~L~pgG~lvi~~~~~  192 (235)
T 1jg1_A          165 TAGAP--KIPEPLIEQLKIGGKLIIPVGSY  192 (235)
T ss_dssp             CSBBS--SCCHHHHHTEEEEEEEEEEECSS
T ss_pred             CCcHH--HHHHHHHHhcCCCcEEEEEEecC
Confidence            75331  22246788999999999987643

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.55  E-value=8.8e-14  Score=123.66  Aligned_cols=109  Identities=13%  Similarity=0.092  Sum_probs=87.5

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC--CEEEEEccccccccC-CcCCCCceEE
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL--NVQIVRGRAETLGKD-VSFREQYDVA  150 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~~~~-~~~~~~fD~I  150 (243)
                      .++.+|||+|||+|.+++.+|.. ...+|+|||+|+.+++.|++|++.+++.  +++++++|+.+.... .....+||+|
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~-ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~I  289 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMG-GAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII  289 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHT-TBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             cCCCeEEEEeeccCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEE
Confidence            45789999999999999998864 3459999999999999999999999986  799999999874321 0012579999


Q ss_pred             EEcC-------------cccHHHHHHHHccCcccCeEEEEEeCCCc
Q 026122          151 VARA-------------VAEMRILAEYCLPLVRVGGLFVAAKGHDP  183 (243)
Q Consensus       151 ~~~~-------------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  183 (243)
                      +++.             ...+.++++.+.++|+|||.+++......
T Consensus       290 i~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~  335 (385)
T 2b78_A          290 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAAN  335 (385)
T ss_dssp             EECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred             EECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCc
Confidence            9852             11356688888999999999998875443

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.55  E-value=1.6e-13  Score=118.23  Aligned_cols=146  Identities=11%  Similarity=0.036  Sum_probs=102.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH--cCC--CCEEEEEccccccccCCcCCCCceEEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSL--TQL--LNVQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~~--~~v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      +.+|||||||+|..+..+++..+..+|++||+|+.+++.++++...  .++  .+++++++|+.+....  ..++||+|+
T Consensus        96 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~--~~~~fD~Ii  173 (304)
T 2o07_A           96 PRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQ--NQDAFDVII  173 (304)
T ss_dssp             CCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHT--CSSCEEEEE
T ss_pred             CCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhh--CCCCceEEE
Confidence            6799999999999998888766678999999999999999998765  233  4699999998774221  126899999


Q ss_pred             EcCcc--------cHHHHHHHHccCcccCeEEEEEe-CCC-cHHHHHHHHHHHHHhCCeeeEEEEEecCCCCC-ceEEEE
Q 026122          152 ARAVA--------EMRILAEYCLPLVRVGGLFVAAK-GHD-PQEEVKNSERAVQLMGASLLQLCSVESQSPFG-QRTAVV  220 (243)
Q Consensus       152 ~~~~~--------~~~~~l~~~~~~LkpgG~l~~~~-~~~-~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~-~r~~v~  220 (243)
                      ++...        ...++++.+.++|+|||.+++.. ..+ .......+.+.++.. |..........|.-++ .-.+++
T Consensus       174 ~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~-f~~v~~~~~~vP~~~~g~~g~~~  252 (304)
T 2o07_A          174 TDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSL-FPVVAYAYCTIPTYPSGQIGFML  252 (304)
T ss_dssp             EECC-----------CHHHHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHHH-CSEEEEEEEECTTSGGGEEEEEE
T ss_pred             ECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecCCcccchHHHHHHHHHHHHh-CCCceeEEEEeccccCcceEEEE
Confidence            97532        13578999999999999999876 332 233444554544443 4445554444554333 334555


Q ss_pred             EEee
Q 026122          221 CLKS  224 (243)
Q Consensus       221 ~~k~  224 (243)
                      +.|.
T Consensus       253 as~~  256 (304)
T 2o07_A          253 CSKN  256 (304)
T ss_dssp             EESS
T ss_pred             EeCC
Confidence            5544

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.55  E-value=4e-13  Score=121.17  Aligned_cols=128  Identities=13%  Similarity=0.080  Sum_probs=95.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccC-CcCCCCceEEEEc
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD-VSFREQYDVAVAR  153 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~~~fD~I~~~  153 (243)
                      ++.+|||+|||+|.+++.+|..  +.+|+|+|+|+.+++.|+++++.+++.|++++++|+.+.... +...++||+|+++
T Consensus       286 ~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv~d  363 (433)
T 1uwv_A          286 PEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLD  363 (433)
T ss_dssp             TTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEEC
T ss_pred             CCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcCCCCEEEEC
Confidence            4779999999999999999866  679999999999999999999999998999999999884221 0112579999997


Q ss_pred             Ccc-cHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEEEe
Q 026122          154 AVA-EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVE  208 (243)
Q Consensus       154 ~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~  208 (243)
                      ... ....+++.+.+ ++|++.+++...+.   .+..-...+.+.|+.+..+..++
T Consensus       364 PPr~g~~~~~~~l~~-~~p~~ivyvsc~p~---tlard~~~l~~~Gy~~~~~~~~d  415 (433)
T 1uwv_A          364 PARAGAAGVMQQIIK-LEPIRIVYVSCNPA---TLARDSEALLKAGYTIARLAMLD  415 (433)
T ss_dssp             CCTTCCHHHHHHHHH-HCCSEEEEEESCHH---HHHHHHHHHHHTTCEEEEEEEEC
T ss_pred             CCCccHHHHHHHHHh-cCCCeEEEEECChH---HHHhhHHHHHHCCcEEEEEEEec
Confidence            421 12355555543 68888877754432   23333455667899998887776

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.55  E-value=1.3e-14  Score=127.07  Aligned_cols=101  Identities=15%  Similarity=0.218  Sum_probs=87.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      ++.+|||+|||+|.+++.++...|..+|+++|+|+.+++.++++.+.+++. ++++.+|+.+..     .++||+|+++.
T Consensus       196 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~-~~~~~~d~~~~~-----~~~fD~Iv~~~  269 (343)
T 2pjd_A          196 TKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVE-GEVFASNVFSEV-----KGRFDMIISNP  269 (343)
T ss_dssp             CCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCC-CEEEECSTTTTC-----CSCEEEEEECC
T ss_pred             CCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-CEEEEccccccc-----cCCeeEEEECC
Confidence            367999999999999999999888889999999999999999999988875 678889987643     26899999974


Q ss_pred             c---------ccHHHHHHHHccCcccCeEEEEEeCC
Q 026122          155 V---------AEMRILAEYCLPLVRVGGLFVAAKGH  181 (243)
Q Consensus       155 ~---------~~~~~~l~~~~~~LkpgG~l~~~~~~  181 (243)
                      .         .....+++.+.++|||||.+++....
T Consensus       270 ~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  305 (343)
T 2pjd_A          270 PFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANA  305 (343)
T ss_dssp             CCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEET
T ss_pred             CcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcC
Confidence            2         24688999999999999999987753

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.54  E-value=5.6e-15  Score=123.42  Aligned_cols=105  Identities=12%  Similarity=0.008  Sum_probs=82.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHc---CCCC------------------------
Q 026122           76 NLKLVDVGTGAGLPGLVLAIA--CPDWKVTLLESMNKRCVFLEHAVSLT---QLLN------------------------  126 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~--~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~------------------------  126 (243)
                      +.+|||+|||+|..++.++..  .++.+|+|+|+|+.+++.|++++...   ++.+                        
T Consensus        52 ~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (250)
T 1o9g_A           52 PVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQAA  131 (250)
T ss_dssp             CEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred             CCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhhh
Confidence            679999999999999999887  66789999999999999999988766   4432                        


Q ss_pred             --EE-------------EEEccccccccCC--cCCCCceEEEEcCc-------------ccHHHHHHHHccCcccCeEEE
Q 026122          127 --VQ-------------IVRGRAETLGKDV--SFREQYDVAVARAV-------------AEMRILAEYCLPLVRVGGLFV  176 (243)
Q Consensus       127 --v~-------------~~~~d~~~~~~~~--~~~~~fD~I~~~~~-------------~~~~~~l~~~~~~LkpgG~l~  176 (243)
                        ++             ++++|+.+.....  ...++||+|+++..             ..+..+++.+.++|+|||+++
T Consensus       132 ~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~  211 (250)
T 1o9g_A          132 RRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVIA  211 (250)
T ss_dssp             HHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEEE
T ss_pred             hhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEEE
Confidence              56             9999988743100  01248999999631             235689999999999999999


Q ss_pred             EEeC
Q 026122          177 AAKG  180 (243)
Q Consensus       177 ~~~~  180 (243)
                      +...
T Consensus       212 ~~~~  215 (250)
T 1o9g_A          212 VTDR  215 (250)
T ss_dssp             EEES
T ss_pred             EeCc
Confidence            8543

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.54  E-value=1.1e-13  Score=125.35  Aligned_cols=130  Identities=21%  Similarity=0.114  Sum_probs=99.5

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEE
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIACPD-WKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      ..++.+|||+|||+|..+..++...++ ++|+++|+|+.+++.++++++++|+.+++++++|+.++.... ..++||+|+
T Consensus       257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~-~~~~fD~Vl  335 (450)
T 2yxl_A          257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEII-GEEVADKVL  335 (450)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSS-CSSCEEEEE
T ss_pred             CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhh-ccCCCCEEE
Confidence            456889999999999999999988766 899999999999999999999999988999999998875311 015799999


Q ss_pred             EcC----cc------c----------------HHHHHHHHccCcccCeEEEEEeCCCcHHHH-HHHHHHHHHh-CCeeeE
Q 026122          152 ARA----VA------E----------------MRILAEYCLPLVRVGGLFVAAKGHDPQEEV-KNSERAVQLM-GASLLQ  203 (243)
Q Consensus       152 ~~~----~~------~----------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~-~~~~~~l~~~-g~~~~~  203 (243)
                      ++.    ..      +                ...+++.+.++|||||.+++.......++- ..+...++.+ +|..+.
T Consensus       336 ~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~~ene~~v~~~l~~~~~~~~~~  415 (450)
T 2yxl_A          336 LDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFKEENEKNIRWFLNVHPEFKLVP  415 (450)
T ss_dssp             EECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHHHHCSSCEECC
T ss_pred             EcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhCCCCEEee
Confidence            842    10      1                167899999999999999987754433322 2333445565 566544

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.54  E-value=5.1e-14  Score=121.64  Aligned_cols=119  Identities=19%  Similarity=0.204  Sum_probs=90.7

Q ss_pred             CeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCcc
Q 026122           77 LKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAVA  156 (243)
Q Consensus        77 ~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~  156 (243)
                      .+|||||||+|..+..+++.+|+.+|++||+++.+++.++++.......+++++++|..++.... ..++||+|+++...
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~-~~~~fDvIi~D~~~  169 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESF-TPASRDVIIRDVFA  169 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTC-CTTCEEEEEECCST
T ss_pred             CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhc-cCCCCCEEEECCCC
Confidence            49999999999999999988888999999999999999998875443456999999998763210 12689999996421


Q ss_pred             ------c--HHHHHHHHccCcccCeEEEEEeCCC-cHHHHHHHHHHHHH
Q 026122          157 ------E--MRILAEYCLPLVRVGGLFVAAKGHD-PQEEVKNSERAVQL  196 (243)
Q Consensus       157 ------~--~~~~l~~~~~~LkpgG~l~~~~~~~-~~~~~~~~~~~l~~  196 (243)
                            .  ..++++.++++|+|||.+++..+.. ....+..+.+.++.
T Consensus       170 ~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~~~~~~~~~~~~~tL~~  218 (317)
T 3gjy_A          170 GAITPQNFTTVEFFEHCHRGLAPGGLYVANCGDHSDLRGAKSELAGMME  218 (317)
T ss_dssp             TSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEECTTCHHHHHHHHHHHH
T ss_pred             ccccchhhhHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHH
Confidence                  1  2789999999999999998876422 22334444554544

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.54  E-value=3.7e-14  Score=114.10  Aligned_cols=92  Identities=14%  Similarity=0.230  Sum_probs=72.2

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccc-------------
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACP--DWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLG-------------  138 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-------------  138 (243)
                      +++.+|||+|||+|..+..++...+  +++|+|+|+|+.+           ...+++++++|+.+..             
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~~~v~~~~~d~~~~~~~~~~~~~~i~~~   89 (201)
T 2plw_A           21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PIPNVYFIQGEIGKDNMNNIKNINYIDNM   89 (201)
T ss_dssp             CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CCTTCEEEECCTTTTSSCCC---------
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CCCCceEEEccccchhhhhhccccccccc
Confidence            3478999999999999999998877  6899999999831           2356899999998764             


Q ss_pred             ------------cCCcCCCCceEEEEcCcc--------cH-------HHHHHHHccCcccCeEEEEEe
Q 026122          139 ------------KDVSFREQYDVAVARAVA--------EM-------RILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       139 ------------~~~~~~~~fD~I~~~~~~--------~~-------~~~l~~~~~~LkpgG~l~~~~  179 (243)
                                  ..   .++||+|+++...        +.       ..+++.+.++|||||.+++..
T Consensus        90 ~~~~~~~~~~~~~~---~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~  154 (201)
T 2plw_A           90 NNNSVDYKLKEILQ---DKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKM  154 (201)
T ss_dssp             --CHHHHHHHHHHT---TCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cchhhHHHHHhhcC---CCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence                        11   2589999996421        11       247888999999999998854

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.54  E-value=7.6e-14  Score=108.95  Aligned_cols=112  Identities=13%  Similarity=0.180  Sum_probs=82.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccc--------cCCcCCC
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLG--------KDVSFRE  145 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--------~~~~~~~  145 (243)
                      ++.+|||+|||+|..+..++... ++.+|+|+|+++ +++.          .+++++++|+.+.+        ..   .+
T Consensus        22 ~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~----------~~~~~~~~d~~~~~~~~~~~~~~~---~~   87 (180)
T 1ej0_A           22 PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI----------VGVDFLQGDFRDELVMKALLERVG---DS   87 (180)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC----------TTEEEEESCTTSHHHHHHHHHHHT---TC
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc----------CcEEEEEcccccchhhhhhhccCC---CC
Confidence            37899999999999999999874 568999999998 6432          56999999998864        22   26


Q ss_pred             CceEEEEcCc----ccH-----------HHHHHHHccCcccCeEEEEEeC-CCcHHHHHHHHHHHHHhCCeeeEE
Q 026122          146 QYDVAVARAV----AEM-----------RILAEYCLPLVRVGGLFVAAKG-HDPQEEVKNSERAVQLMGASLLQL  204 (243)
Q Consensus       146 ~fD~I~~~~~----~~~-----------~~~l~~~~~~LkpgG~l~~~~~-~~~~~~~~~~~~~l~~~g~~~~~~  204 (243)
                      +||+|+++..    ...           ..+++.+.++|+|||.+++... .....   .+.+.++.. +....+
T Consensus        88 ~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~---~~~~~~~~~-~~~~~~  158 (180)
T 1ej0_A           88 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFD---EYLREIRSL-FTKVKV  158 (180)
T ss_dssp             CEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHH---HHHHHHHHH-EEEEEE
T ss_pred             ceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCCcHH---HHHHHHHHh-hhhEEe
Confidence            8999999642    122           6889999999999999988653 23333   334444453 544443

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.54  E-value=3.2e-14  Score=117.03  Aligned_cols=100  Identities=22%  Similarity=0.292  Sum_probs=81.3

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      .++.+|||+|||+|..+..++...  .+|+|+|+|+.+++.++++....+  +++++++|+.+....   .++||+|++.
T Consensus        69 ~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~--~v~~~~~d~~~~~~~---~~~fD~v~~~  141 (231)
T 1vbf_A           69 HKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYN--NIKLILGDGTLGYEE---EKPYDRVVVW  141 (231)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCS--SEEEEESCGGGCCGG---GCCEEEEEES
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhcC--CeEEEECCccccccc---CCCccEEEEC
Confidence            347899999999999999998874  799999999999999999988776  799999999873222   2689999997


Q ss_pred             CcccHHHHHHHHccCcccCeEEEEEeCCC
Q 026122          154 AVAEMRILAEYCLPLVRVGGLFVAAKGHD  182 (243)
Q Consensus       154 ~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  182 (243)
                      ....  .+.+.+.+.|+|||++++..+..
T Consensus       142 ~~~~--~~~~~~~~~L~pgG~l~~~~~~~  168 (231)
T 1vbf_A          142 ATAP--TLLCKPYEQLKEGGIMILPIGVG  168 (231)
T ss_dssp             SBBS--SCCHHHHHTEEEEEEEEEEECSS
T ss_pred             CcHH--HHHHHHHHHcCCCcEEEEEEcCC
Confidence            6331  22356788999999999987643

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.54  E-value=7.4e-14  Score=112.50  Aligned_cols=115  Identities=12%  Similarity=0.105  Sum_probs=84.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  155 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~  155 (243)
                      +.+|||+|||+|..++.++.. +..+|+|+|+|+.+++.++++.+     +++++++|+.+++      ++||+|+++..
T Consensus        52 ~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~-----~~~~~~~d~~~~~------~~~D~v~~~~p  119 (200)
T 1ne2_A           52 GRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCG-----GVNFMVADVSEIS------GKYDTWIMNPP  119 (200)
T ss_dssp             TSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCT-----TSEEEECCGGGCC------CCEEEEEECCC
T ss_pred             CCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcC-----CCEEEECcHHHCC------CCeeEEEECCC
Confidence            789999999999999888866 45589999999999999998865     6899999998863      57999999753


Q ss_pred             ----c--cHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEEEec
Q 026122          156 ----A--EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVES  209 (243)
Q Consensus       156 ----~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~  209 (243)
                          .  ....+++.+.+.+   |.+++......   ...+.+.++..| .+..+.....
T Consensus       120 ~~~~~~~~~~~~l~~~~~~~---g~~~~~~~~~~---~~~~~~~~~~~g-~~~~~~~~~~  172 (200)
T 1ne2_A          120 FGSVVKHSDRAFIDKAFETS---MWIYSIGNAKA---RDFLRREFSARG-DVFREEKVYI  172 (200)
T ss_dssp             C-------CHHHHHHHHHHE---EEEEEEEEGGG---HHHHHHHHHHHE-EEEEEEEEEE
T ss_pred             chhccCchhHHHHHHHHHhc---CcEEEEEcCch---HHHHHHHHHHCC-CEEEEEEEec
Confidence                1  1246777777777   44555554333   233455566788 6666655443

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.54  E-value=1.6e-13  Score=120.49  Aligned_cols=142  Identities=16%  Similarity=0.125  Sum_probs=107.7

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      +...+|+|||||+|..+..+++.+|+.+++..|. +.+++.+++++...+..+|+++.+|+.+-+.     ..+|++++.
T Consensus       178 ~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~-----~~~D~~~~~  251 (353)
T 4a6d_A          178 SVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDPL-----PEADLYILA  251 (353)
T ss_dssp             GGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTSCC-----CCCSEEEEE
T ss_pred             ccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccCCC-----CCceEEEee
Confidence            3467999999999999999999999999999998 7889999888765555679999999976432     458999986


Q ss_pred             Cc----c--cHHHHHHHHccCcccCeEEEEEeCC---C---c-HH----------------HHHHHHHHHHHhCCeeeEE
Q 026122          154 AV----A--EMRILAEYCLPLVRVGGLFVAAKGH---D---P-QE----------------EVKNSERAVQLMGASLLQL  204 (243)
Q Consensus       154 ~~----~--~~~~~l~~~~~~LkpgG~l~~~~~~---~---~-~~----------------~~~~~~~~l~~~g~~~~~~  204 (243)
                      .+    .  +...+++++++.|+|||++++....   .   . ..                ...++.+.++++||+.+++
T Consensus       252 ~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll~~AGf~~v~v  331 (353)
T 4a6d_A          252 RVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSSAGFRDFQF  331 (353)
T ss_dssp             SSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHHTCEEEEE
T ss_pred             eecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHCCCceEEE
Confidence            52    2  2467899999999999999987631   1   1 00                1246778889999998876


Q ss_pred             EEEecCCCCCceEEEEEEeeCC
Q 026122          205 CSVESQSPFGQRTAVVCLKSRR  226 (243)
Q Consensus       205 ~~~~~~~~~~~r~~v~~~k~~~  226 (243)
                      ..     ..+...+|+++|+-.
T Consensus       332 ~~-----~~~~~~~i~ArKgt~  348 (353)
T 4a6d_A          332 KK-----TGAIYDAILARKGTH  348 (353)
T ss_dssp             EC-----CSSSCEEEEEECCCC
T ss_pred             EE-----cCCceEEEEEEecCc
Confidence            54     234567778877643

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.53  E-value=8.1e-14  Score=116.93  Aligned_cols=94  Identities=19%  Similarity=0.243  Sum_probs=78.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~-  154 (243)
                      +.+|||||||+|..+..++..  +.+|+|+|+|+.+++.++++..    .+  ++++|+.+++..   .++||+|++.. 
T Consensus        55 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~----~~--~~~~d~~~~~~~---~~~fD~v~~~~~  123 (260)
T 2avn_A           55 PCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGV----KN--VVEAKAEDLPFP---SGAFEAVLALGD  123 (260)
T ss_dssp             CCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTC----SC--EEECCTTSCCSC---TTCEEEEEECSS
T ss_pred             CCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcC----CC--EEECcHHHCCCC---CCCEEEEEEcch
Confidence            789999999999999888865  5799999999999999887643    22  888999887643   26899999964 


Q ss_pred             ----cccHHHHHHHHccCcccCeEEEEEeC
Q 026122          155 ----VAEMRILAEYCLPLVRVGGLFVAAKG  180 (243)
Q Consensus       155 ----~~~~~~~l~~~~~~LkpgG~l~~~~~  180 (243)
                          ..+...+++++.++|||||.+++...
T Consensus       124 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  153 (260)
T 2avn_A          124 VLSYVENKDKAFSEIRRVLVPDGLLIATVD  153 (260)
T ss_dssp             HHHHCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             hhhccccHHHHHHHHHHHcCCCeEEEEEeC
Confidence                24689999999999999999988653

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.53  E-value=4.1e-14  Score=128.24  Aligned_cols=128  Identities=16%  Similarity=0.089  Sum_probs=98.2

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEE
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIACPD-WKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      ..++.+|||+|||+|..++.+|...++ ++|+|+|+|+.+++.++++++++|+. ++++++|+.++...  ..++||+|+
T Consensus        99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~--~~~~FD~Il  175 (464)
T 3m6w_A           99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEA--FGTYFHRVL  175 (464)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHH--HCSCEEEEE
T ss_pred             cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhh--ccccCCEEE
Confidence            356889999999999999999987654 79999999999999999999999998 99999999887531  126899999


Q ss_pred             EcCc----------c----------------cHHHHHHHHccCcccCeEEEEEeCCCcHHHHHH-HHHHHHHh-CCeeeE
Q 026122          152 ARAV----------A----------------EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKN-SERAVQLM-GASLLQ  203 (243)
Q Consensus       152 ~~~~----------~----------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~-~~~~l~~~-g~~~~~  203 (243)
                      +++.          .                ....+++.+.++|||||++++..+....+|-.+ +...++++ +++++.
T Consensus       176 ~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~eEne~vv~~~l~~~~~~~l~~  255 (464)
T 3m6w_A          176 LDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPEENEGVVAHFLKAHPEFRLED  255 (464)
T ss_dssp             EECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHHHHCTTEEEEC
T ss_pred             ECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCchhcCHHHHHHHHHHCCCcEEEe
Confidence            7421          0                127899999999999999998776543333222 23334455 455544

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.53  E-value=8.2e-14  Score=124.19  Aligned_cols=126  Identities=19%  Similarity=0.133  Sum_probs=96.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCC-cCCCCceEEEE
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDV-SFREQYDVAVA  152 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~-~~~~~fD~I~~  152 (243)
                      ++.+|||+|||+|..++.+|.. +..+|+|+|+|+.+++.++++++.+++. +++++++|+.+..... ...++||+|++
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~  295 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL  295 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence            5889999999999999999865 4569999999999999999999999997 7999999998763210 00268999999


Q ss_pred             cCc-------------ccHHHHHHHHccCcccCeEEEEEeCCC--cHHHHHHH-HHHHHHhCCee
Q 026122          153 RAV-------------AEMRILAEYCLPLVRVGGLFVAAKGHD--PQEEVKNS-ERAVQLMGASL  201 (243)
Q Consensus       153 ~~~-------------~~~~~~l~~~~~~LkpgG~l~~~~~~~--~~~~~~~~-~~~l~~~g~~~  201 (243)
                      +..             ..+..++..+.+.|+|||.+++.....  ...+..+. .+.+...|...
T Consensus       296 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~v~~~~~~~~~~~  360 (396)
T 2as0_A          296 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMFKDMIIAAGAKAGKFL  360 (396)
T ss_dssp             CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTEEE
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence            641             346788999999999999988877432  22333332 24455556444

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.53  E-value=6.7e-14  Score=120.62  Aligned_cols=103  Identities=11%  Similarity=0.120  Sum_probs=83.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc-------CCCCEEEEEccccccc----cCCcCC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT-------QLLNVQIVRGRAETLG----KDVSFR  144 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~~~~v~~~~~d~~~~~----~~~~~~  144 (243)
                      +.+|||+|||+|..+..++. .+..+|+|+|+|+.+++.++++....       +..+++++++|+.+.+    ... ..
T Consensus        35 ~~~VLDlGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-~~  112 (313)
T 3bgv_A           35 DITVLDLGCGKGGDLLKWKK-GRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRD-PQ  112 (313)
T ss_dssp             CCEEEEETCTTTTTHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSS-TT
T ss_pred             CCEEEEECCCCcHHHHHHHh-cCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhccc-CC
Confidence            77999999999999888886 35789999999999999999988764       3346999999999875    211 12


Q ss_pred             CCceEEEEcCc--------ccHHHHHHHHccCcccCeEEEEEeC
Q 026122          145 EQYDVAVARAV--------AEMRILAEYCLPLVRVGGLFVAAKG  180 (243)
Q Consensus       145 ~~fD~I~~~~~--------~~~~~~l~~~~~~LkpgG~l~~~~~  180 (243)
                      ++||+|+++..        .+...+++++.++|||||.+++...
T Consensus       113 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~  156 (313)
T 3bgv_A          113 MCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTP  156 (313)
T ss_dssp             CCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             CCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence            58999998642        2357899999999999999988653

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.53  E-value=1.4e-14  Score=119.14  Aligned_cols=104  Identities=15%  Similarity=0.161  Sum_probs=83.8

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCC------CCEEEEEeCCHHHHHHHHHHHHHcC-----CCCEEEEEccccccccCC
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIACP------DWKVTLLESMNKRCVFLEHAVSLTQ-----LLNVQIVRGRAETLGKDV  141 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~------~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~v~~~~~d~~~~~~~~  141 (243)
                      ++++.+|||+|||+|..+..++...+      ..+|+++|+++.+++.++++.+..+     ..+++++++|+.+.... 
T Consensus        82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-  160 (227)
T 1r18_A           82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPP-  160 (227)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGG-
T ss_pred             CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCc-
Confidence            45588999999999999998887654      2699999999999999999988776     56799999999873221 


Q ss_pred             cCCCCceEEEEcCcccHHHHHHHHccCcccCeEEEEEeCC
Q 026122          142 SFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGH  181 (243)
Q Consensus       142 ~~~~~fD~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  181 (243)
                        .++||+|++.....  .+.+.+.+.|||||++++..+.
T Consensus       161 --~~~fD~I~~~~~~~--~~~~~~~~~LkpgG~lvi~~~~  196 (227)
T 1r18_A          161 --NAPYNAIHVGAAAP--DTPTELINQLASGGRLIVPVGP  196 (227)
T ss_dssp             --GCSEEEEEECSCBS--SCCHHHHHTEEEEEEEEEEESC
T ss_pred             --CCCccEEEECCchH--HHHHHHHHHhcCCCEEEEEEec
Confidence              26799999976331  2346788999999999998764

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.53  E-value=7.4e-15  Score=121.69  Aligned_cols=96  Identities=11%  Similarity=0.060  Sum_probs=81.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      +.+|||+|||+|..++.++..  +.+|+|+|+|+.+++.++++++.+++ .+++++++|+.++...    ++||+|+++.
T Consensus        79 ~~~vLD~gcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~D~v~~~~  152 (241)
T 3gdh_A           79 CDVVVDAFCGVGGNTIQFALT--GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASF----LKADVVFLSP  152 (241)
T ss_dssp             CSEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGG----CCCSEEEECC
T ss_pred             CCEEEECccccCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhccc----CCCCEEEECC
Confidence            789999999999999999875  48999999999999999999999998 5799999999987632    6899999975


Q ss_pred             c----ccHHHHHHHHccCcccCeEEEE
Q 026122          155 V----AEMRILAEYCLPLVRVGGLFVA  177 (243)
Q Consensus       155 ~----~~~~~~l~~~~~~LkpgG~l~~  177 (243)
                      .    ......+..+.++|+|||.+++
T Consensus       153 ~~~~~~~~~~~~~~~~~~L~pgG~~i~  179 (241)
T 3gdh_A          153 PWGGPDYATAETFDIRTMMSPDGFEIF  179 (241)
T ss_dssp             CCSSGGGGGSSSBCTTTSCSSCHHHHH
T ss_pred             CcCCcchhhhHHHHHHhhcCCcceeHH
Confidence            2    2333355678899999999654

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.53  E-value=5.2e-14  Score=128.36  Aligned_cols=105  Identities=18%  Similarity=0.220  Sum_probs=88.4

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      ++.+|||+|||+|..++.+|...+ .++|+|+|+|+.+++.++++++++|+.+++++++|+.++...  ..++||.|+++
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~--~~~~fD~Il~D  194 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAA--VPEMFDAILLD  194 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHH--STTCEEEEEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhh--ccccCCEEEEC
Confidence            688999999999999999998764 579999999999999999999999998899999999887531  12689999985


Q ss_pred             Cc----------c----------------cHHHHHHHHccCcccCeEEEEEeCC
Q 026122          154 AV----------A----------------EMRILAEYCLPLVRVGGLFVAAKGH  181 (243)
Q Consensus       154 ~~----------~----------------~~~~~l~~~~~~LkpgG~l~~~~~~  181 (243)
                      +.          .                ....+++.+.++|||||++++....
T Consensus       195 ~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs  248 (479)
T 2frx_A          195 APCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCT  248 (479)
T ss_dssp             CCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             CCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEeccc
Confidence            21          0                0357889999999999999987754

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.52  E-value=2.2e-13  Score=118.89  Aligned_cols=120  Identities=13%  Similarity=0.083  Sum_probs=91.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc--CC--CCEEEEEccccccccCCcCCCCceEEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT--QL--LNVQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~--~~v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      +.+|||||||+|..+..+++..+..+|++||+|+.+++.|+++....  ++  .+++++++|+.++.... ..++||+|+
T Consensus       121 ~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~-~~~~fDlIi  199 (334)
T 1xj5_A          121 PKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNA-AEGSYDAVI  199 (334)
T ss_dssp             CCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTS-CTTCEEEEE
T ss_pred             CCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhc-cCCCccEEE
Confidence            67999999999999999987766789999999999999999987653  33  46999999988752210 026899999


Q ss_pred             EcCcc-----c---HHHHHHHHccCcccCeEEEEEeC-C-CcHHHHHHHHHHHHH
Q 026122          152 ARAVA-----E---MRILAEYCLPLVRVGGLFVAAKG-H-DPQEEVKNSERAVQL  196 (243)
Q Consensus       152 ~~~~~-----~---~~~~l~~~~~~LkpgG~l~~~~~-~-~~~~~~~~~~~~l~~  196 (243)
                      ++...     .   ...+++.+.++|+|||.+++..+ . .....+....+.+++
T Consensus       200 ~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~  254 (334)
T 1xj5_A          200 VDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESLWLHMDIIEDIVSNCRE  254 (334)
T ss_dssp             ECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHH
T ss_pred             ECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEecCCccccHHHHHHHHHHHHH
Confidence            96531     1   47899999999999999988642 2 333444444454443

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.52  E-value=1.5e-13  Score=109.90  Aligned_cols=110  Identities=14%  Similarity=0.133  Sum_probs=77.6

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCC---------CEEEEEeCCHHHHHHHHHHHHHcCCCCEEEE-EccccccccC---
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPD---------WKVTLLESMNKRCVFLEHAVSLTQLLNVQIV-RGRAETLGKD---  140 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~---------~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~-~~d~~~~~~~---  140 (243)
                      +++.+|||+|||+|..+..+++..+.         .+|+|+|+|+.+           ...+++++ .+|+.+....   
T Consensus        21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~~~~~~~~~~d~~~~~~~~~~   89 (196)
T 2nyu_A           21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PLEGATFLCPADVTDPRTSQRI   89 (196)
T ss_dssp             CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CCTTCEEECSCCTTSHHHHHHH
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cCCCCeEEEeccCCCHHHHHHH
Confidence            34789999999999999999988654         799999999831           23568899 8888764310   


Q ss_pred             --CcCCCCceEEEEcCc--------ccH-------HHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHH
Q 026122          141 --VSFREQYDVAVARAV--------AEM-------RILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQL  196 (243)
Q Consensus       141 --~~~~~~fD~I~~~~~--------~~~-------~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~  196 (243)
                        ....++||+|+++..        .+.       ..+++.+.++|||||.+++......  ...++...++.
T Consensus        90 ~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~--~~~~~~~~l~~  160 (196)
T 2nyu_A           90 LEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGS--QSRRLQRRLTE  160 (196)
T ss_dssp             HHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSG--GGHHHHHHHHH
T ss_pred             HHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCc--cHHHHHHHHHH
Confidence              000147999998541        111       4789999999999999998754322  23344444444

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.52  E-value=2.4e-14  Score=119.09  Aligned_cols=97  Identities=14%  Similarity=0.140  Sum_probs=78.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHH----CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcccccc---ccCCcCCCCce
Q 026122           76 NLKLVDVGTGAGLPGLVLAIA----CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETL---GKDVSFREQYD  148 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~----~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~---~~~~~~~~~fD  148 (243)
                      +.+|||||||+|..++.++..    .++++|+|||+|+.+++.|+    ... .+++++++|+.+.   +...  ..+||
T Consensus        82 ~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~----~~~-~~v~~~~gD~~~~~~l~~~~--~~~fD  154 (236)
T 2bm8_A           82 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA----SDM-ENITLHQGDCSDLTTFEHLR--EMAHP  154 (236)
T ss_dssp             CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG----GGC-TTEEEEECCSSCSGGGGGGS--SSCSS
T ss_pred             CCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh----ccC-CceEEEECcchhHHHHHhhc--cCCCC
Confidence            679999999999999999987    57899999999999988776    222 4699999999884   3221  13799


Q ss_pred             EEEEcC-cccHHHHHHHHcc-CcccCeEEEEEe
Q 026122          149 VAVARA-VAEMRILAEYCLP-LVRVGGLFVAAK  179 (243)
Q Consensus       149 ~I~~~~-~~~~~~~l~~~~~-~LkpgG~l~~~~  179 (243)
                      +|++.+ ..++..+++++.+ +|||||++++..
T Consensus       155 ~I~~d~~~~~~~~~l~~~~r~~LkpGG~lv~~d  187 (236)
T 2bm8_A          155 LIFIDNAHANTFNIMKWAVDHLLEEGDYFIIED  187 (236)
T ss_dssp             EEEEESSCSSHHHHHHHHHHHTCCTTCEEEECS
T ss_pred             EEEECCchHhHHHHHHHHHHhhCCCCCEEEEEe
Confidence            999865 3467889999997 999999988853

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.51  E-value=2.8e-14  Score=121.91  Aligned_cols=142  Identities=13%  Similarity=0.050  Sum_probs=98.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEE-EccccccccCCcCC-CCceEEEEc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIV-RGRAETLGKDVSFR-EQYDVAVAR  153 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~-~~d~~~~~~~~~~~-~~fD~I~~~  153 (243)
                      +.+|||+|||||.++..+++. +..+|+|||+|+.|++.+.++-     .++... ..++..+... ..+ .+||+|+++
T Consensus        86 g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~~-----~rv~~~~~~ni~~l~~~-~l~~~~fD~v~~d  158 (291)
T 3hp7_A           86 DMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQD-----DRVRSMEQYNFRYAEPV-DFTEGLPSFASID  158 (291)
T ss_dssp             TCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHTC-----TTEEEECSCCGGGCCGG-GCTTCCCSEEEEC
T ss_pred             ccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhC-----cccceecccCceecchh-hCCCCCCCEEEEE
Confidence            679999999999999888765 5579999999999988743321     223222 3345444321 112 349999986


Q ss_pred             C-cccHHHHHHHHccCcccCeEEEEEeCCC-------------------cHHHHHHHHHHHHHhCCeeeEEEEEecCCCC
Q 026122          154 A-VAEMRILAEYCLPLVRVGGLFVAAKGHD-------------------PQEEVKNSERAVQLMGASLLQLCSVESQSPF  213 (243)
Q Consensus       154 ~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~-------------------~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  213 (243)
                      . +..+..++.++.++|+|||.+++...++                   ....+.++.+.+..+||.+..+..-...+..
T Consensus       159 ~sf~sl~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~~~~~spi~g~~  238 (291)
T 3hp7_A          159 VSFISLNLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFSVKGLDFSPIQGGH  238 (291)
T ss_dssp             CSSSCGGGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEEEEEEECSSCCGG
T ss_pred             eeHhhHHHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCC
Confidence            4 5567889999999999999999872110                   0123456777788999998887654455556


Q ss_pred             CceEEEEEEee
Q 026122          214 GQRTAVVCLKS  224 (243)
Q Consensus       214 ~~r~~v~~~k~  224 (243)
                      +....++.-++
T Consensus       239 gn~e~l~~~~~  249 (291)
T 3hp7_A          239 GNIEFLAHLEK  249 (291)
T ss_dssp             GCCCEEEEEEE
T ss_pred             cCHHHHHHhhh
Confidence            66666665544

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.51  E-value=1.7e-13  Score=115.73  Aligned_cols=138  Identities=8%  Similarity=-0.050  Sum_probs=98.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH----cCCCCEEEEEccccccccCCcCCCCceEEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSL----TQLLNVQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~----~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      +.+|||||||+|..+..+++. + .+|++||+++.+++.|+++...    ...++++++.+|..++.      ++||+|+
T Consensus        73 ~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~------~~fD~Ii  144 (262)
T 2cmg_A           73 LKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI------KKYDLIF  144 (262)
T ss_dssp             CCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC------CCEEEEE
T ss_pred             CCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH------hhCCEEE
Confidence            679999999999998888766 6 8999999999999999876532    22346999999998753      5799999


Q ss_pred             EcCcccHHHHHHHHccCcccCeEEEEEeCC--CcHHHHHHHHHHHHHhCCeeeEEEEEecCCCCCceEEEEEEee
Q 026122          152 ARAVAEMRILAEYCLPLVRVGGLFVAAKGH--DPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKS  224 (243)
Q Consensus       152 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~v~~~k~  224 (243)
                      +.... ...+++.+.+.|+|||.+++..+.  .....+..+.+.++.. |..........|. ++.-.++++.|.
T Consensus       145 ~d~~d-p~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~~~~~~~~vP~-~g~~~~~~as~~  216 (262)
T 2cmg_A          145 CLQEP-DIHRIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGGV-FSVAMPFVAPLRI-LSNKGYIYASFK  216 (262)
T ss_dssp             ESSCC-CHHHHHHHHTTEEEEEEEEEEEECTTTCHHHHHHHHHHHHTT-CSEEEEECCTTCT-TCCEEEEEEESS
T ss_pred             ECCCC-hHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHh-CCceEEEEEccCC-CcccEEEEeeCC
Confidence            98543 345899999999999999886533  2234455555555543 5444443333344 444445555544

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.51  E-value=9.4e-15  Score=121.30  Aligned_cols=142  Identities=12%  Similarity=0.065  Sum_probs=89.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEE-EccccccccCCcCCC-CceEEEEc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIV-RGRAETLGKDVSFRE-QYDVAVAR  153 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~-~~d~~~~~~~~~~~~-~fD~I~~~  153 (243)
                      +.+|||||||+|..+..+++. +..+|+|||+|+.|++.++++..+     +... ..++...... .... .||.+.+.
T Consensus        38 g~~VLDiGcGtG~~t~~la~~-g~~~V~gvDis~~ml~~a~~~~~~-----~~~~~~~~~~~~~~~-~~~~~~~d~~~~D  110 (232)
T 3opn_A           38 GKTCLDIGSSTGGFTDVMLQN-GAKLVYALDVGTNQLAWKIRSDER-----VVVMEQFNFRNAVLA-DFEQGRPSFTSID  110 (232)
T ss_dssp             TCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSCCCCCHHHHTCTT-----EEEECSCCGGGCCGG-GCCSCCCSEEEEC
T ss_pred             CCEEEEEccCCCHHHHHHHhc-CCCEEEEEcCCHHHHHHHHHhCcc-----ccccccceEEEeCHh-HcCcCCCCEEEEE
Confidence            679999999999999888866 445999999999999987664332     2111 1122111100 0011 24444433


Q ss_pred             C-cccHHHHHHHHccCcccCeEEEEEeCCC-------------------cHHHHHHHHHHHHHhCCeeeEEEEEecCCCC
Q 026122          154 A-VAEMRILAEYCLPLVRVGGLFVAAKGHD-------------------PQEEVKNSERAVQLMGASLLQLCSVESQSPF  213 (243)
Q Consensus       154 ~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~-------------------~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  213 (243)
                      . +..+..+++++.++|||||.+++...+.                   ......++.+.++.+||.+..+..-......
T Consensus       111 ~v~~~l~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~~~~~~pi~g~~  190 (232)
T 3opn_A          111 VSFISLDLILPPLYEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVKGLTFSPIKGGA  190 (232)
T ss_dssp             CSSSCGGGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEEEEEEEECSSCBTT
T ss_pred             EEhhhHHHHHHHHHHhccCCCEEEEEECcccccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCCEEEEEEEccCCCCC
Confidence            2 3345889999999999999999873210                   0123456778888999998887654444445


Q ss_pred             CceEEEEEEee
Q 026122          214 GQRTAVVCLKS  224 (243)
Q Consensus       214 ~~r~~v~~~k~  224 (243)
                      +....++.-++
T Consensus       191 gn~e~l~~~~~  201 (232)
T 3opn_A          191 GNVEFLVHLLK  201 (232)
T ss_dssp             TBCCEEEEEEE
T ss_pred             CCHHHHHHHhh
Confidence            54444444443

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.50  E-value=3.5e-14  Score=119.47  Aligned_cols=94  Identities=18%  Similarity=0.153  Sum_probs=79.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  155 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~  155 (243)
                      +.+|||+|||+|..+..++...++.+|+|+|+|+.+++.++++.     .++.+..+|+.+++...   ++||+|++...
T Consensus        86 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~~~---~~fD~v~~~~~  157 (269)
T 1p91_A           86 ATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY-----PQVTFCVASSHRLPFSD---TSMDAIIRIYA  157 (269)
T ss_dssp             CCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC-----TTSEEEECCTTSCSBCT---TCEEEEEEESC
T ss_pred             CCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC-----CCcEEEEcchhhCCCCC---CceeEEEEeCC
Confidence            78999999999999999998777789999999999999887753     35889999998876542   68999998654


Q ss_pred             ccHHHHHHHHccCcccCeEEEEEeC
Q 026122          156 AEMRILAEYCLPLVRVGGLFVAAKG  180 (243)
Q Consensus       156 ~~~~~~l~~~~~~LkpgG~l~~~~~  180 (243)
                      .   ..++++.++|||||.+++...
T Consensus       158 ~---~~l~~~~~~L~pgG~l~~~~~  179 (269)
T 1p91_A          158 P---CKAEELARVVKPGGWVITATP  179 (269)
T ss_dssp             C---CCHHHHHHHEEEEEEEEEEEE
T ss_pred             h---hhHHHHHHhcCCCcEEEEEEc
Confidence            3   357888999999999998774

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.50  E-value=5.3e-14  Score=133.84  Aligned_cols=126  Identities=11%  Similarity=0.137  Sum_probs=98.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC--CEEEEEccccccccCCcCCCCceEEEE
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL--NVQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      ++.+|||+|||+|..++.++.. +..+|++||+|+.+++.+++|++.+++.  +++++++|+.++...  ..++||+|++
T Consensus       539 ~g~~VLDlg~GtG~~sl~aa~~-ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~--~~~~fD~Ii~  615 (703)
T 3v97_A          539 KGKDFLNLFSYTGSATVHAGLG-GARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLRE--ANEQFDLIFI  615 (703)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHH--CCCCEEEEEE
T ss_pred             CCCcEEEeeechhHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHh--cCCCccEEEE
Confidence            5889999999999999888864 4457999999999999999999999986  699999999885322  1268999999


Q ss_pred             cCc---------------ccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEE
Q 026122          153 RAV---------------AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCS  206 (243)
Q Consensus       153 ~~~---------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~  206 (243)
                      +..               ..+..+++.+.++|+|||.+++..+......-   .+.+++.|+....+..
T Consensus       616 DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~~~~~~---~~~l~~~g~~~~~i~~  681 (703)
T 3v97_A          616 DPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRGFRMD---LDGLAKLGLKAQEITQ  681 (703)
T ss_dssp             CCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCTTCCCC---HHHHHHTTEEEEECTT
T ss_pred             CCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccC---HHHHHHcCCceeeeee
Confidence            641               24678899999999999999988765221211   2445578876555443

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.50  E-value=4.7e-14  Score=125.08  Aligned_cols=102  Identities=14%  Similarity=0.157  Sum_probs=88.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc---------------CCCCEEEEEccccccccC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT---------------QLLNVQIVRGRAETLGKD  140 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~---------------~~~~v~~~~~d~~~~~~~  140 (243)
                      +.+|||+|||+|..++.+|...++.+|+++|+++.+++.+++|++.+               ++.+++++++|+.++...
T Consensus        48 ~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~~  127 (378)
T 2dul_A           48 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAE  127 (378)
T ss_dssp             CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHH
T ss_pred             CCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHHh
Confidence            78999999999999999998877789999999999999999999999               887799999999876432


Q ss_pred             CcCCCCceEEEEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122          141 VSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       141 ~~~~~~fD~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      .  .++||+|+.+.......+++.+.+.|++||.+++..
T Consensus       128 ~--~~~fD~I~lDP~~~~~~~l~~a~~~lk~gG~l~vt~  164 (378)
T 2dul_A          128 R--HRYFHFIDLDPFGSPMEFLDTALRSAKRRGILGVTA  164 (378)
T ss_dssp             S--TTCEEEEEECCSSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             c--cCCCCEEEeCCCCCHHHHHHHHHHhcCCCCEEEEEe
Confidence            1  257999998765556789999999999999887764

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.49  E-value=4.8e-13  Score=113.59  Aligned_cols=103  Identities=9%  Similarity=-0.008  Sum_probs=81.9

Q ss_pred             CCeEEEEcCCC---ChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccC-------CcC-C
Q 026122           76 NLKLVDVGTGA---GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD-------VSF-R  144 (243)
Q Consensus        76 ~~~VLDiGcG~---G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-------~~~-~  144 (243)
                      ..+|||||||+   |..+..+++..|+.+|+++|+|+.|++.++++...  ..+++++++|+.+....       ... .
T Consensus        78 ~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~--~~~v~~~~~D~~~~~~~~~~~~~~~~~d~  155 (274)
T 2qe6_A           78 ISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAK--DPNTAVFTADVRDPEYILNHPDVRRMIDF  155 (274)
T ss_dssp             CCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTT--CTTEEEEECCTTCHHHHHHSHHHHHHCCT
T ss_pred             CCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCC--CCCeEEEEeeCCCchhhhccchhhccCCC
Confidence            47999999999   98876677777889999999999999999988743  24699999999764210       000 1


Q ss_pred             CCceEEEEcC----ccc--HHHHHHHHccCcccCeEEEEEeC
Q 026122          145 EQYDVAVARA----VAE--MRILAEYCLPLVRVGGLFVAAKG  180 (243)
Q Consensus       145 ~~fD~I~~~~----~~~--~~~~l~~~~~~LkpgG~l~~~~~  180 (243)
                      ++||+|+++.    +.+  ...+++++.+.|+|||+|++...
T Consensus       156 ~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~  197 (274)
T 2qe6_A          156 SRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSL  197 (274)
T ss_dssp             TSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             CCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEe
Confidence            4799999975    223  78999999999999999998773

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.48  E-value=2.4e-13  Score=119.01  Aligned_cols=124  Identities=17%  Similarity=0.205  Sum_probs=91.6

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEEE
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      +++.+|||||||+|..+..++..+|+.+++++|++ .++.  +++.+..+.. +++++.+|+.+.     .+ +||+|++
T Consensus       183 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~--~~~~~~~~~~~~v~~~~~d~~~~-----~p-~~D~v~~  253 (348)
T 3lst_A          183 PATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRA-EVVA--RHRLDAPDVAGRWKVVEGDFLRE-----VP-HADVHVL  253 (348)
T ss_dssp             CSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECH-HHHT--TCCCCCGGGTTSEEEEECCTTTC-----CC-CCSEEEE
T ss_pred             cCCceEEEECCccCHHHHHHHHHCCCCEEEEecCH-HHhh--cccccccCCCCCeEEEecCCCCC-----CC-CCcEEEE
Confidence            44789999999999999999999999999999994 4333  3323333443 599999999631     12 7999999


Q ss_pred             cCc----ccH--HHHHHHHccCcccCeEEEEEeCC--C----cH----------------HHHHHHHHHHHHhCCeeeEE
Q 026122          153 RAV----AEM--RILAEYCLPLVRVGGLFVAAKGH--D----PQ----------------EEVKNSERAVQLMGASLLQL  204 (243)
Q Consensus       153 ~~~----~~~--~~~l~~~~~~LkpgG~l~~~~~~--~----~~----------------~~~~~~~~~l~~~g~~~~~~  204 (243)
                      ..+    .+.  ..+++++++.|||||++++....  .    ..                ....++.+.++++||+.+++
T Consensus       254 ~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~  333 (348)
T 3lst_A          254 KRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQERTAAELEPLFTAAGLRLDRV  333 (348)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCCCBHHHHHHHHHHTTEEEEEE
T ss_pred             ehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhcCCCcCCCHHHHHHHHHHCCCceEEE
Confidence            652    233  68999999999999999987621  1    00                12346778888999988877


Q ss_pred             EE
Q 026122          205 CS  206 (243)
Q Consensus       205 ~~  206 (243)
                      ..
T Consensus       334 ~~  335 (348)
T 3lst_A          334 VG  335 (348)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.48  E-value=4.1e-14  Score=126.65  Aligned_cols=125  Identities=13%  Similarity=0.079  Sum_probs=92.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCE--EEEEccccccccCCcCCCCceEEEE
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNV--QIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v--~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      ++.+|||||||+|..+..++..  +.+|+|+|+|+.+++.+++.    +....  .+...+..+++..   +++||+|++
T Consensus       107 ~~~~VLDiGcG~G~~~~~l~~~--g~~v~gvD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~l~~~---~~~fD~I~~  177 (416)
T 4e2x_A          107 PDPFIVEIGCNDGIMLRTIQEA--GVRHLGFEPSSGVAAKAREK----GIRVRTDFFEKATADDVRRT---EGPANVIYA  177 (416)
T ss_dssp             SSCEEEEETCTTTTTHHHHHHT--TCEEEEECCCHHHHHHHHTT----TCCEECSCCSHHHHHHHHHH---HCCEEEEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHc--CCcEEEECCCHHHHHHHHHc----CCCcceeeechhhHhhcccC---CCCEEEEEE
Confidence            4789999999999999888865  56999999999999888765    43321  1223444444332   278999999


Q ss_pred             cC----cccHHHHHHHHccCcccCeEEEEEeCCC-----------------cHHHHHHHHHHHHHhCCeeeEEEEEe
Q 026122          153 RA----VAEMRILAEYCLPLVRVGGLFVAAKGHD-----------------PQEEVKNSERAVQLMGASLLQLCSVE  208 (243)
Q Consensus       153 ~~----~~~~~~~l~~~~~~LkpgG~l~~~~~~~-----------------~~~~~~~~~~~l~~~g~~~~~~~~~~  208 (243)
                      +.    +.++..+++++.++|||||.+++.....                 ..-...++.+.++++||.+++...+.
T Consensus       178 ~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~~~~~~~~  254 (416)
T 4e2x_A          178 ANTLCHIPYVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDEHFFLFSATSVQGMAQRCGFELVDVQRLP  254 (416)
T ss_dssp             ESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCCEECCHHHHHHHHHHTTEEEEEEEEEC
T ss_pred             CChHHhcCCHHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhhhhhcCCHHHHHHHHHHcCCEEEEEEEcc
Confidence            75    4478999999999999999999865320                 01123456777889999998887653

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=99.47  E-value=6e-14  Score=124.69  Aligned_cols=102  Identities=12%  Similarity=0.102  Sum_probs=87.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCC--EEEEEcccccccc-CCcCCCCceEEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPD-WKVTLLESMNKRCVFLEHAVSLTQLLN--VQIVRGRAETLGK-DVSFREQYDVAV  151 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~--v~~~~~d~~~~~~-~~~~~~~fD~I~  151 (243)
                      +.+|||++||+|..++.+|...++ .+|+++|+++.+++.+++|++.+++.+  ++++++|+.++.. ..  .++||+|+
T Consensus        53 g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~--~~~fD~V~  130 (392)
T 3axs_A           53 PVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEW--GFGFDYVD  130 (392)
T ss_dssp             CEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCC--SSCEEEEE
T ss_pred             CCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhh--CCCCcEEE
Confidence            779999999999999999986544 689999999999999999999999976  9999999987643 21  25799999


Q ss_pred             EcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122          152 ARAVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       152 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      ++.......+++.+.+.|++||.+++..
T Consensus       131 lDP~g~~~~~l~~a~~~Lk~gGll~~t~  158 (392)
T 3axs_A          131 LDPFGTPVPFIESVALSMKRGGILSLTA  158 (392)
T ss_dssp             ECCSSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ECCCcCHHHHHHHHHHHhCCCCEEEEEe
Confidence            9875555678999999999999888765

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.47  E-value=2.9e-13  Score=119.62  Aligned_cols=140  Identities=17%  Similarity=0.093  Sum_probs=95.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCC-----------
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFR-----------  144 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~-----------  144 (243)
                      +.+|||+|||+|.+++.+|..  ..+|+|+|+|+.+++.|++|++.+++++++++++|+.++.......           
T Consensus       214 ~~~vLDl~cG~G~~~l~la~~--~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~  291 (369)
T 3bt7_A          214 KGDLLELYCGNGNFSLALARN--FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDL  291 (369)
T ss_dssp             CSEEEEESCTTSHHHHHHGGG--SSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCG
T ss_pred             CCEEEEccCCCCHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhcccccccccccc
Confidence            578999999999999988864  4699999999999999999999999988999999998753210000           


Q ss_pred             --CCceEEEEcCcccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEEEe-cCCCCCceEEEEE
Q 026122          145 --EQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVE-SQSPFGQRTAVVC  221 (243)
Q Consensus       145 --~~fD~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~-~~~~~~~r~~v~~  221 (243)
                        .+||+|+++...  ..+.+.+.+.|+++|.+++.+.. .....+++. .+.. |+.+.++..++ +|....--.++++
T Consensus       292 ~~~~fD~Vv~dPPr--~g~~~~~~~~l~~~g~ivyvsc~-p~t~ard~~-~l~~-~y~~~~~~~~D~FP~T~HvE~v~ll  366 (369)
T 3bt7_A          292 KSYQCETIFVDPPR--SGLDSETEKMVQAYPRILYISCN-PETLCKNLE-TLSQ-THKVERLALFDQFPYTHHMQCGVLL  366 (369)
T ss_dssp             GGCCEEEEEECCCT--TCCCHHHHHHHTTSSEEEEEESC-HHHHHHHHH-HHHH-HEEEEEEEEECCSTTSSCCEEEEEE
T ss_pred             ccCCCCEEEECcCc--cccHHHHHHHHhCCCEEEEEECC-HHHHHHHHH-HHhh-CcEEEEEEeeccCCCCCcEEEEEEE
Confidence              279999997422  11223444556688887776643 222223333 2332 68888888777 3433333334444


Q ss_pred             E
Q 026122          222 L  222 (243)
Q Consensus       222 ~  222 (243)
                      .
T Consensus       367 ~  367 (369)
T 3bt7_A          367 T  367 (369)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.47  E-value=3.9e-13  Score=127.72  Aligned_cols=100  Identities=16%  Similarity=0.134  Sum_probs=82.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHH------cCCCCEEEEEccccccccCCcCCCCce
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSL------TQLLNVQIVRGRAETLGKDVSFREQYD  148 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~------~~~~~v~~~~~d~~~~~~~~~~~~~fD  148 (243)
                      +.+|||||||+|.++..+++.. +..+|+|||+|+.+++.|+++++.      .++.+++++++|+.+++...   ++||
T Consensus       722 g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d---~sFD  798 (950)
T 3htx_A          722 ASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRL---HDVD  798 (950)
T ss_dssp             CSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTS---CSCC
T ss_pred             CCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCccc---CCee
Confidence            7899999999999998888775 447999999999999999886653      35667999999999987643   7899


Q ss_pred             EEEEcCc----cc--HHHHHHHHccCcccCeEEEEEe
Q 026122          149 VAVARAV----AE--MRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       149 ~I~~~~~----~~--~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      +|++..+    .+  ...+++.+.++|||| .+++..
T Consensus       799 lVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIIST  834 (950)
T 3htx_A          799 IGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVST  834 (950)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEE
T ss_pred             EEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEe
Confidence            9999752    22  346899999999999 666544

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.46  E-value=1.7e-13  Score=116.44  Aligned_cols=103  Identities=16%  Similarity=0.164  Sum_probs=78.4

Q ss_pred             CCeEEEEcCCCCh----HHHHHHHHCC----CCEEEEEeCCHHHHHHHHHHHH--------------H---------cC-
Q 026122           76 NLKLVDVGTGAGL----PGLVLAIACP----DWKVTLLESMNKRCVFLEHAVS--------------L---------TQ-  123 (243)
Q Consensus        76 ~~~VLDiGcG~G~----~~~~la~~~~----~~~v~~vD~s~~~~~~a~~~~~--------------~---------~~-  123 (243)
                      +.+|||+|||||.    +++.++...+    +++|+|+|+|+.|++.|++++-              +         .+ 
T Consensus       106 ~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~  185 (274)
T 1af7_A          106 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL  185 (274)
T ss_dssp             CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSE
T ss_pred             CcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCc
Confidence            5699999999998    5556665534    4699999999999999998641              0         01 


Q ss_pred             --C-----CCEEEEEccccccccCCcCCCCceEEEEcCcc------cHHHHHHHHccCcccCeEEEEEeC
Q 026122          124 --L-----LNVQIVRGRAETLGKDVSFREQYDVAVARAVA------EMRILAEYCLPLVRVGGLFVAAKG  180 (243)
Q Consensus       124 --~-----~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~------~~~~~l~~~~~~LkpgG~l~~~~~  180 (243)
                        +     .+|+|.++|+.+.+..  ..++||+|+|+++.      ....+++.+.+.|+|||++++..+
T Consensus       186 ~~v~~~lr~~V~F~~~dl~~~~~~--~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg~s  253 (274)
T 1af7_A          186 VRVRQELANYVEFSSVNLLEKQYN--VPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGHS  253 (274)
T ss_dssp             EEECHHHHTTEEEEECCTTCSSCC--CCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECTT
T ss_pred             eeechhhcccCeEEecccCCCCCC--cCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEEec
Confidence              0     2589999999874322  12689999998742      347999999999999999988444

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.45  E-value=6e-13  Score=119.85  Aligned_cols=128  Identities=15%  Similarity=0.134  Sum_probs=96.5

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEE
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      ..++.+|||+|||+|..+..++...++++|+|+|+|+.+++.++++++++++. ++++++|+.+..... ..++||+|++
T Consensus       244 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~-~~~~~~D~~~~~~~~-~~~~fD~Vl~  321 (429)
T 1sqg_A          244 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMK-ATVKQGDGRYPSQWC-GEQQFDRILL  321 (429)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCC-CEEEECCTTCTHHHH-TTCCEEEEEE
T ss_pred             CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCC-eEEEeCchhhchhhc-ccCCCCEEEE
Confidence            35688999999999999999998887789999999999999999999999984 789999998764210 0257999998


Q ss_pred             cCc----------cc----------------HHHHHHHHccCcccCeEEEEEeCCCcHHH-HHHHHHHHHHh-CCeee
Q 026122          153 RAV----------AE----------------MRILAEYCLPLVRVGGLFVAAKGHDPQEE-VKNSERAVQLM-GASLL  202 (243)
Q Consensus       153 ~~~----------~~----------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~-~~~~~~~l~~~-g~~~~  202 (243)
                      +..          ++                ...+++.+.+.|||||++++.......++ -..+...++.. ++...
T Consensus       322 D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~~ene~~v~~~l~~~~~~~~~  399 (429)
T 1sqg_A          322 DAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTADAELC  399 (429)
T ss_dssp             ECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHHHHHCTTCEEC
T ss_pred             eCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhHHHHHHHHHHhCCCCEEe
Confidence            531          01                15889999999999999998875433222 22333445554 45543

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.45  E-value=8e-13  Score=116.71  Aligned_cols=122  Identities=16%  Similarity=0.156  Sum_probs=93.1

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      ++..+|||||||+|..+..+++.+|+.+++++|+ +.+++.+++      ..+++++.+|+.+ +.+    .. |+|++.
T Consensus       202 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~p----~~-D~v~~~  268 (368)
T 3reo_A          202 EGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPA------FSGVEHLGGDMFD-GVP----KG-DAIFIK  268 (368)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------CTTEEEEECCTTT-CCC----CC-SEEEEE
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhh------cCCCEEEecCCCC-CCC----CC-CEEEEe
Confidence            4468999999999999999999999999999999 887766543      2469999999986 322    33 999986


Q ss_pred             Ccc------cHHHHHHHHccCcccCeEEEEEeCCC-----c--HH--------------------HHHHHHHHHHHhCCe
Q 026122          154 AVA------EMRILAEYCLPLVRVGGLFVAAKGHD-----P--QE--------------------EVKNSERAVQLMGAS  200 (243)
Q Consensus       154 ~~~------~~~~~l~~~~~~LkpgG~l~~~~~~~-----~--~~--------------------~~~~~~~~l~~~g~~  200 (243)
                      .+.      +...+++++++.|+|||++++.....     .  ..                    ...++.+.++++||+
T Consensus       269 ~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt~~e~~~ll~~AGF~  348 (368)
T 3reo_A          269 WICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAMASGFR  348 (368)
T ss_dssp             SCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCCHHHHHHHHHHTTCC
T ss_pred             chhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCCHHHHHHHHHHCCCe
Confidence            522      24578999999999999999876211     0  00                    124567788899999


Q ss_pred             eeEEEEEe
Q 026122          201 LLQLCSVE  208 (243)
Q Consensus       201 ~~~~~~~~  208 (243)
                      .+++....
T Consensus       349 ~v~~~~~~  356 (368)
T 3reo_A          349 GFKVASCA  356 (368)
T ss_dssp             EEEEEEEE
T ss_pred             eeEEEEeC
Confidence            98876543

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.44  E-value=1.3e-12  Score=105.10  Aligned_cols=93  Identities=18%  Similarity=0.193  Sum_probs=71.0

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCc----CC----C
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS----FR----E  145 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~----~~----~  145 (243)
                      +++.+|||+|||+|..+..+++.  +.+|+|||+++.           ....+++++++|+.+......    ..    +
T Consensus        24 ~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~-----------~~~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~   90 (191)
T 3dou_A           24 RKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEM-----------EEIAGVRFIRCDIFKETIFDDIDRALREEGIE   90 (191)
T ss_dssp             CTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCC-----------CCCTTCEEEECCTTSSSHHHHHHHHHHHHTCS
T ss_pred             CCCCEEEEEeecCCHHHHHHHHc--CCcEEEEecccc-----------ccCCCeEEEEccccCHHHHHHHHHHhhcccCC
Confidence            34889999999999999888866  689999999974           134579999999987532100    01    3


Q ss_pred             CceEEEEcCcc---------------cHHHHHHHHccCcccCeEEEEEe
Q 026122          146 QYDVAVARAVA---------------EMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       146 ~fD~I~~~~~~---------------~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      +||+|+++...               ....+++.+.++|||||.|++..
T Consensus        91 ~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~  139 (191)
T 3dou_A           91 KVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQ  139 (191)
T ss_dssp             SEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence            89999996411               13577888999999999998755

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.44  E-value=7.2e-13  Score=115.88  Aligned_cols=119  Identities=8%  Similarity=0.047  Sum_probs=90.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCC-----CEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPD-----WKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVA  150 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~-----~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I  150 (243)
                      +.+|||+|||+|.+++.++...+.     .+|+|+|+++.+++.|+.++...++ +++++++|..+...    .++||+|
T Consensus       131 ~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~-~~~i~~~D~l~~~~----~~~fD~I  205 (344)
T 2f8l_A          131 NVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ-KMTLLHQDGLANLL----VDPVDVV  205 (344)
T ss_dssp             EEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC-CCEEEESCTTSCCC----CCCEEEE
T ss_pred             CCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC-CceEEECCCCCccc----cCCccEE
Confidence            679999999999998888876543     7899999999999999999988887 68999999876432    2689999


Q ss_pred             EEcCc----c-----------------cH-HHHHHHHccCcccCeEEEEEeCCC--cHHHHHHHHHHHHHhCC
Q 026122          151 VARAV----A-----------------EM-RILAEYCLPLVRVGGLFVAAKGHD--PQEEVKNSERAVQLMGA  199 (243)
Q Consensus       151 ~~~~~----~-----------------~~-~~~l~~~~~~LkpgG~l~~~~~~~--~~~~~~~~~~~l~~~g~  199 (243)
                      +++..    .                 +. ..+++.+.+.|+|||+++++.+..  .......+.+.+.+.|+
T Consensus       206 i~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~~~~~~~~~~ir~~l~~~~~  278 (344)
T 2f8l_A          206 ISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKNGH  278 (344)
T ss_dssp             EEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHHHEE
T ss_pred             EECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECchhcCCchHHHHHHHHHhCCe
Confidence            99842    0                 01 268999999999999999887211  11122444555556665

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.44  E-value=9e-13  Score=115.50  Aligned_cols=120  Identities=15%  Similarity=0.176  Sum_probs=92.9

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      ++..+|||||||+|..+..++..+|+.+++++|+ +.+++.+++      ..+++++.+|+.+ +.     ..||+|+++
T Consensus       187 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~-----p~~D~v~~~  253 (352)
T 1fp2_A          187 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSG------SNNLTYVGGDMFT-SI-----PNADAVLLK  253 (352)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------BTTEEEEECCTTT-CC-----CCCSEEEEE
T ss_pred             ccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhccc------CCCcEEEeccccC-CC-----CCccEEEee
Confidence            3468999999999999999999999999999999 988877654      2459999999976 22     239999986


Q ss_pred             C----cccHH--HHHHHHccCccc---CeEEEEEeC---CCc-H---------------------HHHHHHHHHHHHhCC
Q 026122          154 A----VAEMR--ILAEYCLPLVRV---GGLFVAAKG---HDP-Q---------------------EEVKNSERAVQLMGA  199 (243)
Q Consensus       154 ~----~~~~~--~~l~~~~~~Lkp---gG~l~~~~~---~~~-~---------------------~~~~~~~~~l~~~g~  199 (243)
                      .    +.+..  .+++++.+.|||   ||++++...   ... .                     ....++.+.++++||
T Consensus       254 ~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~t~~e~~~ll~~aGf  333 (352)
T 1fp2_A          254 YILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGF  333 (352)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTC
T ss_pred             hhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHhccCCCCCHHHHHHHHHHCCC
Confidence            5    23334  899999999999   999988752   111 0                     012467778889999


Q ss_pred             eeeEEEE
Q 026122          200 SLLQLCS  206 (243)
Q Consensus       200 ~~~~~~~  206 (243)
                      ..+++..
T Consensus       334 ~~~~~~~  340 (352)
T 1fp2_A          334 QHYKISP  340 (352)
T ss_dssp             CEEEEEE
T ss_pred             CeeEEEe
Confidence            8887765

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.43  E-value=5.1e-13  Score=118.26  Aligned_cols=94  Identities=21%  Similarity=0.332  Sum_probs=74.3

Q ss_pred             CCeEEEEcCC------CChHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCc---CCC
Q 026122           76 NLKLVDVGTG------AGLPGLVLAIA-CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS---FRE  145 (243)
Q Consensus        76 ~~~VLDiGcG------~G~~~~~la~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~---~~~  145 (243)
                      +.+|||||||      +|..++.+++. +|+++|+|||+|+.|.         ....+++++++|+.+++....   ..+
T Consensus       217 ~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---------~~~~rI~fv~GDa~dlpf~~~l~~~d~  287 (419)
T 3sso_A          217 QVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---------VDELRIRTIQGDQNDAEFLDRIARRYG  287 (419)
T ss_dssp             CCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---------GCBTTEEEEECCTTCHHHHHHHHHHHC
T ss_pred             CCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---------hcCCCcEEEEecccccchhhhhhcccC
Confidence            6899999999      77777777765 5889999999999862         123579999999998654300   026


Q ss_pred             CceEEEEcCc---ccHHHHHHHHccCcccCeEEEEE
Q 026122          146 QYDVAVARAV---AEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       146 ~fD~I~~~~~---~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                      +||+|++++.   .+....+++++++|||||.+++.
T Consensus       288 sFDlVisdgsH~~~d~~~aL~el~rvLKPGGvlVi~  323 (419)
T 3sso_A          288 PFDIVIDDGSHINAHVRTSFAALFPHVRPGGLYVIE  323 (419)
T ss_dssp             CEEEEEECSCCCHHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             CccEEEECCcccchhHHHHHHHHHHhcCCCeEEEEE
Confidence            8999999763   45788999999999999999985

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.43  E-value=3.5e-12  Score=114.70  Aligned_cols=120  Identities=11%  Similarity=0.159  Sum_probs=90.7

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      .++.+|||+|||+|.+++.+|..  +.+|+|+|+|+.+++.|+++++.++++ ++++++|+.++..     .+||+|+++
T Consensus       289 ~~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~-----~~fD~Vv~d  360 (425)
T 2jjq_A          289 VEGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSV-----KGFDTVIVD  360 (425)
T ss_dssp             CCSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCC-----TTCSEEEEC
T ss_pred             CCCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCc-----cCCCEEEEc
Confidence            45789999999999999999865  569999999999999999999999988 9999999998642     379999997


Q ss_pred             Ccc-c-HHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEEEe
Q 026122          154 AVA-E-MRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVE  208 (243)
Q Consensus       154 ~~~-~-~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~  208 (243)
                      ... . ...+++.+. .|+|||.+++..++.  .-.+++    ..+.+.+..+..++
T Consensus       361 PPr~g~~~~~~~~l~-~l~p~givyvsc~p~--tlarDl----~~l~y~l~~~~~~D  410 (425)
T 2jjq_A          361 PPRAGLHPRLVKRLN-REKPGVIVYVSCNPE--TFARDV----KMLDYRIDEIVALD  410 (425)
T ss_dssp             CCTTCSCHHHHHHHH-HHCCSEEEEEESCHH--HHHHHH----HHSSCCEEEEEEEC
T ss_pred             CCccchHHHHHHHHH-hcCCCcEEEEECChH--HHHhHH----hhCeEEEEEEEEEC
Confidence            531 1 234555554 489999988865432  112222    22227777777766

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=99.41  E-value=1.6e-12  Score=111.04  Aligned_cols=109  Identities=13%  Similarity=0.164  Sum_probs=79.3

Q ss_pred             CCCCeEEEEcCCC------ChHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEE-EEccccccccCCcCCC
Q 026122           74 NSNLKLVDVGTGA------GLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLLNVQI-VRGRAETLGKDVSFRE  145 (243)
Q Consensus        74 ~~~~~VLDiGcG~------G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~-~~~d~~~~~~~~~~~~  145 (243)
                      +++.+|||+|||+      |.  ..+++..+ +++|+|+|+|+.             +.++++ +++|+.+.+..    +
T Consensus        62 ~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-------------v~~v~~~i~gD~~~~~~~----~  122 (290)
T 2xyq_A           62 PYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-------------VSDADSTLIGDCATVHTA----N  122 (290)
T ss_dssp             CTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-------------BCSSSEEEESCGGGCCCS----S
T ss_pred             CCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-------------CCCCEEEEECccccCCcc----C
Confidence            4588999999955      55  44566665 689999999986             236788 99999886542    6


Q ss_pred             CceEEEEcCcc---------------cHHHHHHHHccCcccCeEEEEEe-CCCcHHHHHHHHHHHHHhCCeeeEE
Q 026122          146 QYDVAVARAVA---------------EMRILAEYCLPLVRVGGLFVAAK-GHDPQEEVKNSERAVQLMGASLLQL  204 (243)
Q Consensus       146 ~fD~I~~~~~~---------------~~~~~l~~~~~~LkpgG~l~~~~-~~~~~~~~~~~~~~l~~~g~~~~~~  204 (243)
                      +||+|+++...               .+..+++.+.++|||||.+++.. .....   .++.+.++.+||..++.
T Consensus       123 ~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~~---~~l~~~l~~~GF~~v~~  194 (290)
T 2xyq_A          123 KWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWN---ADLYKLMGHFSWWTAFV  194 (290)
T ss_dssp             CEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCC---HHHHHHHTTEEEEEEEE
T ss_pred             cccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCCH---HHHHHHHHHcCCcEEEE
Confidence            89999996321               14588999999999999999855 22222   24556667888765444

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.40  E-value=8.8e-13  Score=116.46  Aligned_cols=121  Identities=20%  Similarity=0.211  Sum_probs=93.2

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      +++.+|||||||+|..+..++..+|+.+++++|+ +.+++.+++      ..+++++.+|+.+ +.    +. ||+|+++
T Consensus       208 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~----~~-~D~v~~~  274 (372)
T 1fp1_D          208 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPP------LSGIEHVGGDMFA-SV----PQ-GDAMILK  274 (372)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------CTTEEEEECCTTT-CC----CC-EEEEEEE
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhh------cCCCEEEeCCccc-CC----CC-CCEEEEe
Confidence            4478999999999999999999999999999999 888876654      2469999999987 32    13 9999997


Q ss_pred             Cc----ccHH--HHHHHHccCcccCeEEEEEe---CCCcH-------H----------------HHHHHHHHHHHhCCee
Q 026122          154 AV----AEMR--ILAEYCLPLVRVGGLFVAAK---GHDPQ-------E----------------EVKNSERAVQLMGASL  201 (243)
Q Consensus       154 ~~----~~~~--~~l~~~~~~LkpgG~l~~~~---~~~~~-------~----------------~~~~~~~~l~~~g~~~  201 (243)
                      .+    .+..  .+++++.+.|+|||++++..   .....       .                ...++.+.++++||..
T Consensus       275 ~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~  354 (372)
T 1fp1_D          275 AVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSK  354 (372)
T ss_dssp             SSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSE
T ss_pred             cccccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHhccCCccCCHHHHHHHHHHCCCce
Confidence            52    3344  89999999999999999764   11100       0                1245667788999998


Q ss_pred             eEEEEE
Q 026122          202 LQLCSV  207 (243)
Q Consensus       202 ~~~~~~  207 (243)
                      +++..+
T Consensus       355 ~~~~~~  360 (372)
T 1fp1_D          355 FQVACR  360 (372)
T ss_dssp             EEEEEE
T ss_pred             EEEEEc
Confidence            887654

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.40  E-value=2.9e-12  Score=112.99  Aligned_cols=122  Identities=16%  Similarity=0.098  Sum_probs=93.1

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      ++..+|||||||+|..+..+++.+|+.+++++|+ +.+++.+++      ..+++++.+|+.+ +.+    .. |+|++.
T Consensus       200 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~-~~p----~~-D~v~~~  266 (364)
T 3p9c_A          200 EGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQ------FPGVTHVGGDMFK-EVP----SG-DTILMK  266 (364)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------CTTEEEEECCTTT-CCC----CC-SEEEEE
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhh------cCCeEEEeCCcCC-CCC----CC-CEEEeh
Confidence            3468999999999999999999999999999999 877766543      2469999999987 332    33 999986


Q ss_pred             Ccc------cHHHHHHHHccCcccCeEEEEEeCC--C---c--HH--------------------HHHHHHHHHHHhCCe
Q 026122          154 AVA------EMRILAEYCLPLVRVGGLFVAAKGH--D---P--QE--------------------EVKNSERAVQLMGAS  200 (243)
Q Consensus       154 ~~~------~~~~~l~~~~~~LkpgG~l~~~~~~--~---~--~~--------------------~~~~~~~~l~~~g~~  200 (243)
                      .+.      +...+++++++.|+|||++++....  .   .  ..                    ...++.+.++++||+
T Consensus       267 ~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~AGF~  346 (364)
T 3p9c_A          267 WILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALARGAGFT  346 (364)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCBHHHHHHHHHHTTCC
T ss_pred             HHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccCCHHHHHHHHHHCCCc
Confidence            522      3468899999999999999987521  1   0  00                    023567778899999


Q ss_pred             eeEEEEEe
Q 026122          201 LLQLCSVE  208 (243)
Q Consensus       201 ~~~~~~~~  208 (243)
                      .+++....
T Consensus       347 ~v~~~~~~  354 (364)
T 3p9c_A          347 GVKSTYIY  354 (364)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEEcC
Confidence            98876543

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=99.40  E-value=8.1e-12  Score=107.80  Aligned_cols=109  Identities=8%  Similarity=-0.045  Sum_probs=85.8

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEE
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      +.++.+|||+|||+|..++.+|... +..+|+++|+++.+++.++++++++|+.+++++++|+.++........+||.|+
T Consensus       100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl  179 (309)
T 2b9e_A          100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL  179 (309)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred             CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEE
Confidence            3568899999999999999998764 568999999999999999999999999889999999988754211014799999


Q ss_pred             EcCc----------c-----------c-------HHHHHHHHccCcccCeEEEEEeCCC
Q 026122          152 ARAV----------A-----------E-------MRILAEYCLPLVRVGGLFVAAKGHD  182 (243)
Q Consensus       152 ~~~~----------~-----------~-------~~~~l~~~~~~LkpgG~l~~~~~~~  182 (243)
                      +++.          .           +       ..++++.+.++++ ||+++......
T Consensus       180 ~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~  237 (309)
T 2b9e_A          180 LDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSL  237 (309)
T ss_dssp             ECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCC
T ss_pred             EcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCC
Confidence            8420          0           1       1357888888887 99988776543

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=99.38  E-value=2e-12  Score=115.55  Aligned_cols=134  Identities=11%  Similarity=0.021  Sum_probs=94.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      +.+|||+|||+|.+++.+++.. +..+|+|+|+++.+++.|         .+++++++|+.+....    ++||+|++|.
T Consensus        40 ~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---------~~~~~~~~D~~~~~~~----~~fD~Ii~NP  106 (421)
T 2ih2_A           40 GGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------PWAEGILADFLLWEPG----EAFDLILGNP  106 (421)
T ss_dssp             TCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------TTEEEEESCGGGCCCS----SCEEEEEECC
T ss_pred             CCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---------CCCcEEeCChhhcCcc----CCCCEEEECc
Confidence            5699999999999998888765 568999999999988766         3689999999886432    6899999962


Q ss_pred             ------c---------cc------------------HHHHHHHHccCcccCeEEEEEeCCCc--HHHHHHHHHHHHHhCC
Q 026122          155 ------V---------AE------------------MRILAEYCLPLVRVGGLFVAAKGHDP--QEEVKNSERAVQLMGA  199 (243)
Q Consensus       155 ------~---------~~------------------~~~~l~~~~~~LkpgG~l~~~~~~~~--~~~~~~~~~~l~~~g~  199 (243)
                            .         .+                  ...+++.+.++|+|||+++++.+...  ......+.+.+.+.++
T Consensus       107 Py~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~~l~~~~~~~lr~~l~~~~~  186 (421)
T 2ih2_A          107 PYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALLREFLAREGK  186 (421)
T ss_dssp             CCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGGGHHHHHHHHHHSE
T ss_pred             CccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChHHhcCccHHHHHHHHHhcCC
Confidence                  1         11                  12678899999999999998875321  1223445666667776


Q ss_pred             eeeEEEEEe--cCCCCCceEEEEEEee
Q 026122          200 SLLQLCSVE--SQSPFGQRTAVVCLKS  224 (243)
Q Consensus       200 ~~~~~~~~~--~~~~~~~r~~v~~~k~  224 (243)
                        ..+..+.  ++.....+.+++++|.
T Consensus       187 --~~i~~l~~~F~~~~~~~~il~~~k~  211 (421)
T 2ih2_A          187 --TSVYYLGEVFPQKKVSAVVIRFQKS  211 (421)
T ss_dssp             --EEEEEEESCSTTCCCCEEEEEEESS
T ss_pred             --eEEEECCCCCCCCCccEEEEEEEeC
Confidence              2222222  2333335666666664

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.38  E-value=5e-12  Score=106.90  Aligned_cols=125  Identities=14%  Similarity=0.131  Sum_probs=87.0

Q ss_pred             CCeEEEEcCCC--ChHHHHHH-HHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccC---CcCCCCce-
Q 026122           76 NLKLVDVGTGA--GLPGLVLA-IACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD---VSFREQYD-  148 (243)
Q Consensus        76 ~~~VLDiGcG~--G~~~~~la-~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~---~~~~~~fD-  148 (243)
                      ..+|||||||+  +.....++ +..|+++|++||.|+.|++.+++.....+..+++++++|+.+....   +...+.|| 
T Consensus        79 ~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D~  158 (277)
T 3giw_A           79 IRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLDL  158 (277)
T ss_dssp             CCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCCT
T ss_pred             CCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccCc
Confidence            36899999997  33333444 4568999999999999999999887654434699999999885310   00013344 


Q ss_pred             ----EEEEcCc----cc---HHHHHHHHccCcccCeEEEEEeCC-C-cHHHHHHHHHHHHHhCCe
Q 026122          149 ----VAVARAV----AE---MRILAEYCLPLVRVGGLFVAAKGH-D-PQEEVKNSERAVQLMGAS  200 (243)
Q Consensus       149 ----~I~~~~~----~~---~~~~l~~~~~~LkpgG~l~~~~~~-~-~~~~~~~~~~~l~~~g~~  200 (243)
                          .|+++++    .+   ...+++.+.+.|+|||+|++.... . ..+....+.+.++..|..
T Consensus       159 ~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~~p~~~~~~~~~~~~~g~p  223 (277)
T 3giw_A          159 TRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEFAPQEVGRVAREYAARNMP  223 (277)
T ss_dssp             TSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTTSHHHHHHHHHHHHHTTCC
T ss_pred             CCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCCCHHHHHHHHHHHHhcCCC
Confidence                5677652    23   578999999999999999988632 2 234556666666666653

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.36  E-value=7.3e-13  Score=123.33  Aligned_cols=101  Identities=15%  Similarity=0.142  Sum_probs=77.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  155 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~  155 (243)
                      +.+|||||||+|.++..+|+.  +++|+|||.++.+++.|+..+...+..++++.+++++++.... .+++||+|++..+
T Consensus        67 ~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~fD~v~~~e~  143 (569)
T 4azs_A           67 PLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAAL-EEGEFDLAIGLSV  143 (569)
T ss_dssp             CCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHC-CTTSCSEEEEESC
T ss_pred             CCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhc-cCCCccEEEECcc
Confidence            679999999999999999976  6899999999999999999999888667999999999874221 1268999999763


Q ss_pred             c----cHHHH--HHHHccCcccCeEEEEEe
Q 026122          156 A----EMRIL--AEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       156 ~----~~~~~--l~~~~~~LkpgG~l~~~~  179 (243)
                      .    +...+  +..+.+.|+++|..++..
T Consensus       144 ~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~  173 (569)
T 4azs_A          144 FHHIVHLHGIDEVKRLLSRLADVTQAVILE  173 (569)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHSSEEEEE
T ss_pred             hhcCCCHHHHHHHHHHHHHhccccceeeEE
Confidence            2    22211  234556677777655543

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=99.36  E-value=5.9e-12  Score=110.52  Aligned_cols=119  Identities=18%  Similarity=0.150  Sum_probs=91.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      +..+|||||||+|..+..+++.+|+.+++++|+ +.+++.+++      ..+++++.+|+.+ +.     .+||+|+++.
T Consensus       193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~-----~~~D~v~~~~  259 (358)
T 1zg3_A          193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG------NENLNFVGGDMFK-SI-----PSADAVLLKW  259 (358)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC------CSSEEEEECCTTT-CC-----CCCSEEEEES
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc------CCCcEEEeCccCC-CC-----CCceEEEEcc
Confidence            367999999999999999999999999999999 677766543      3469999999987 32     2499999975


Q ss_pred             c----ccH--HHHHHHHccCccc---CeEEEEEeC---C-CcH----H------------------HHHHHHHHHHHhCC
Q 026122          155 V----AEM--RILAEYCLPLVRV---GGLFVAAKG---H-DPQ----E------------------EVKNSERAVQLMGA  199 (243)
Q Consensus       155 ~----~~~--~~~l~~~~~~Lkp---gG~l~~~~~---~-~~~----~------------------~~~~~~~~l~~~g~  199 (243)
                      +    .+.  ..+++++.+.|+|   ||++++...   . ...    .                  ...++.+.++++||
T Consensus       260 vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf  339 (358)
T 1zg3_A          260 VLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGF  339 (358)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTC
T ss_pred             cccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccCCCCCCCHHHHHHHHHHcCC
Confidence            2    343  4999999999999   999988652   1 110    0                  22456677889999


Q ss_pred             eeeEEEE
Q 026122          200 SLLQLCS  206 (243)
Q Consensus       200 ~~~~~~~  206 (243)
                      +.+++..
T Consensus       340 ~~~~~~~  346 (358)
T 1zg3_A          340 SSYKITP  346 (358)
T ss_dssp             CEEEEEE
T ss_pred             CeeEEEe
Confidence            9887765

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=99.34  E-value=7.2e-13  Score=114.22  Aligned_cols=114  Identities=15%  Similarity=0.023  Sum_probs=76.3

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeC----CHHHHHHHHHHHHHcCCCCEEEEEc-cccccccCCcCCCCc
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLES----MNKRCVFLEHAVSLTQLLNVQIVRG-RAETLGKDVSFREQY  147 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~----s~~~~~~a~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~f  147 (243)
                      ++++.+|||+|||+|..+..+++.   .+|+|||+    ++.+++.+  ..+..+.++++++++ |+.+++.     ++|
T Consensus        80 ~~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~D~~~l~~-----~~f  149 (305)
T 2p41_A           80 VTPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPI--PMSTYGWNLVRLQSGVDVFFIPP-----ERC  149 (305)
T ss_dssp             SCCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCC--CCCSTTGGGEEEECSCCTTTSCC-----CCC
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHH--HhhhcCCCCeEEEeccccccCCc-----CCC
Confidence            355789999999999999888865   58999999    55433211  111223356999999 8887642     689


Q ss_pred             eEEEEcCcc-------cHH---HHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHH
Q 026122          148 DVAVARAVA-------EMR---ILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQL  196 (243)
Q Consensus       148 D~I~~~~~~-------~~~---~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~  196 (243)
                      |+|+|+...       +..   .+++.+.++|||||.+++-.-.....+..+++..++.
T Consensus       150 D~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~~~~~~~~~l~~l~~  208 (305)
T 2p41_A          150 DTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYMSSVIEKMEALQR  208 (305)
T ss_dssp             SEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCSHHHHHHHHHHHH
T ss_pred             CEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCCCCchHHHHHHHHHH
Confidence            999996421       111   4678888999999998875433322333444554443

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.33  E-value=4.7e-12  Score=108.08  Aligned_cols=72  Identities=22%  Similarity=0.182  Sum_probs=63.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      +.+|||||||+|.++..++..  +.+|+|+|+|+.+++.++++.+..+. .+++++++|+.+++.     .+||+|+++.
T Consensus        29 ~~~VLDiG~G~G~lt~~L~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~-----~~fD~vv~nl  101 (285)
T 1zq9_A           29 TDVVLEVGPGTGNMTVKLLEK--AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDL-----PFFDTCVANL  101 (285)
T ss_dssp             TCEEEEECCTTSTTHHHHHHH--SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCC-----CCCSEEEEEC
T ss_pred             CCEEEEEcCcccHHHHHHHhh--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccc-----hhhcEEEEec
Confidence            789999999999999999977  46999999999999999999877766 579999999988743     4799999974

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.33  E-value=9.1e-12  Score=110.90  Aligned_cols=106  Identities=11%  Similarity=0.050  Sum_probs=84.4

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHHHCCC--------------------------------------CEEEEEeCCHHHHH
Q 026122           72 SCNSNLKLVDVGTGAGLPGLVLAIACPD--------------------------------------WKVTLLESMNKRCV  113 (243)
Q Consensus        72 ~~~~~~~VLDiGcG~G~~~~~la~~~~~--------------------------------------~~v~~vD~s~~~~~  113 (243)
                      ...++..|||.+||+|.+++.+|....+                                      .+|+|+|+|+.+++
T Consensus       198 ~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~  277 (393)
T 3k0b_A          198 SWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIE  277 (393)
T ss_dssp             CCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHH
T ss_pred             CCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHH
Confidence            3455789999999999999888865432                                      56999999999999


Q ss_pred             HHHHHHHHcCCCC-EEEEEccccccccCCcCCCCceEEEEcCc--------ccHHHHHHHHccCccc--CeEEEEEeCC
Q 026122          114 FLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAVARAV--------AEMRILAEYCLPLVRV--GGLFVAAKGH  181 (243)
Q Consensus       114 ~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~fD~I~~~~~--------~~~~~~l~~~~~~Lkp--gG~l~~~~~~  181 (243)
                      .|++|++.+|+.+ ++++++|+.++...    .+||+|++|..        ..+..+.+.+.+.||+  ||.++++.+.
T Consensus       278 ~Ar~Na~~~gl~~~I~~~~~D~~~~~~~----~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~  352 (393)
T 3k0b_A          278 IAKQNAVEAGLGDLITFRQLQVADFQTE----DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYVLTSY  352 (393)
T ss_dssp             HHHHHHHHTTCTTCSEEEECCGGGCCCC----CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEEEECC
T ss_pred             HHHHHHHHcCCCCceEEEECChHhCCCC----CCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            9999999999864 99999999997643    58999999842        2345555555555555  9998888874

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=99.32  E-value=8.6e-13  Score=112.19  Aligned_cols=98  Identities=12%  Similarity=0.018  Sum_probs=69.5

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH-cCCC-CEEEE--EccccccccCCcCCCCce
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSL-TQLL-NVQIV--RGRAETLGKDVSFREQYD  148 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~~~-~v~~~--~~d~~~~~~~~~~~~~fD  148 (243)
                      ++++.+|||+|||+|..+..+++.   .+|+|||+++ ++..+++.... .... +++++  ++|+.+++.     ++||
T Consensus        80 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~-----~~fD  150 (276)
T 2wa2_A           80 VELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKMEP-----FQAD  150 (276)
T ss_dssp             CCCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCCC-----CCCS
T ss_pred             CCCCCEEEEeccCCCHHHHHHHHc---CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCCC-----CCcC
Confidence            345889999999999999888865   6899999998 43222211000 0111 68899  999988652     6899


Q ss_pred             EEEEcCc---cc----HH---HHHHHHccCcccCe--EEEEEe
Q 026122          149 VAVARAV---AE----MR---ILAEYCLPLVRVGG--LFVAAK  179 (243)
Q Consensus       149 ~I~~~~~---~~----~~---~~l~~~~~~LkpgG--~l~~~~  179 (243)
                      +|+|+..   ..    ..   .+++.+.++|||||  .+++..
T Consensus       151 ~Vvsd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~  193 (276)
T 2wa2_A          151 TVLCDIGESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKV  193 (276)
T ss_dssp             EEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred             EEEECCCcCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEe
Confidence            9999642   11    11   37888999999999  888744

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=99.32  E-value=1.6e-11  Score=108.95  Aligned_cols=106  Identities=10%  Similarity=0.037  Sum_probs=85.0

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHHHCCC--------------------------------------CEEEEEeCCHHHHH
Q 026122           72 SCNSNLKLVDVGTGAGLPGLVLAIACPD--------------------------------------WKVTLLESMNKRCV  113 (243)
Q Consensus        72 ~~~~~~~VLDiGcG~G~~~~~la~~~~~--------------------------------------~~v~~vD~s~~~~~  113 (243)
                      ..+++..|+|.+||+|.+++..|....+                                      .+|+|+|+|+.+++
T Consensus       191 ~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~  270 (384)
T 3ldg_A          191 NWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVE  270 (384)
T ss_dssp             TCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHH
T ss_pred             CCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHH
Confidence            3456789999999999999888865432                                      46999999999999


Q ss_pred             HHHHHHHHcCCCC-EEEEEccccccccCCcCCCCceEEEEcCc--------ccHHHHHHHHccCccc--CeEEEEEeCC
Q 026122          114 FLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAVARAV--------AEMRILAEYCLPLVRV--GGLFVAAKGH  181 (243)
Q Consensus       114 ~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~fD~I~~~~~--------~~~~~~l~~~~~~Lkp--gG~l~~~~~~  181 (243)
                      .|++|++.+|+.+ ++++++|+.++...    .+||+|++|..        .++..+.+.+.+.||+  ||.++++.+.
T Consensus       271 ~Ar~Na~~~gl~~~I~~~~~D~~~l~~~----~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~  345 (384)
T 3ldg_A          271 IARKNAREVGLEDVVKLKQMRLQDFKTN----KINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFILTND  345 (384)
T ss_dssp             HHHHHHHHTTCTTTEEEEECCGGGCCCC----CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEEEESC
T ss_pred             HHHHHHHHcCCCCceEEEECChHHCCcc----CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEEEECC
Confidence            9999999999975 99999999997653    58999999841        2455566655555554  9999988874

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.31  E-value=5.9e-12  Score=108.19  Aligned_cols=73  Identities=18%  Similarity=0.175  Sum_probs=60.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      ++.+|||||||+|.++..++..  +.+|+|+|+|+.+++.++++.+..+..+++++++|+.+++.     .+||+|+++.
T Consensus        42 ~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~-----~~~D~Vv~n~  114 (299)
T 2h1r_A           42 SSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVF-----PKFDVCTANI  114 (299)
T ss_dssp             TTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCC-----CCCSEEEEEC
T ss_pred             CcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCc-----ccCCEEEEcC
Confidence            3789999999999999888865  57999999999999999999988888789999999988753     4799999975

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=99.31  E-value=1.9e-12  Score=102.04  Aligned_cols=114  Identities=10%  Similarity=0.070  Sum_probs=84.6

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEE
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      ++++.+|||+|||+                +++|+|+.|++.++++...    +++++++|+.+++.....+++||+|++
T Consensus        10 ~~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~~----~~~~~~~d~~~~~~~~~~~~~fD~V~~   69 (176)
T 2ld4_A           10 ISAGQFVAVVWDKS----------------SPVEALKGLVDKLQALTGN----EGRVSVENIKQLLQSAHKESSFDIILS   69 (176)
T ss_dssp             CCTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTTT----TSEEEEEEGGGGGGGCCCSSCEEEEEE
T ss_pred             CCCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhccc----CcEEEEechhcCccccCCCCCEeEEEE
Confidence            45689999999996                2399999999999877532    489999999987651001378999999


Q ss_pred             cC----c-ccHHHHHHHHccCcccCeEEEEEeCC-------CcHHHHHHHHHHHHHhCCeeeEEEEEe
Q 026122          153 RA----V-AEMRILAEYCLPLVRVGGLFVAAKGH-------DPQEEVKNSERAVQLMGASLLQLCSVE  208 (243)
Q Consensus       153 ~~----~-~~~~~~l~~~~~~LkpgG~l~~~~~~-------~~~~~~~~~~~~l~~~g~~~~~~~~~~  208 (243)
                      +.    . .+...++++++++|||||++++....       .......++.+.++++|| +. +....
T Consensus        70 ~~~l~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf-i~-~~~~~  135 (176)
T 2ld4_A           70 GLVPGSTTLHSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL-VE-VKELQ  135 (176)
T ss_dssp             CCSTTCCCCCCHHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC-EE-EEEEE
T ss_pred             CChhhhcccCHHHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCC-cE-eecCc
Confidence            64    3 56799999999999999999986431       111124667788889999 55 54433

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.31  E-value=1.4e-11  Score=109.43  Aligned_cols=105  Identities=10%  Similarity=0.083  Sum_probs=84.5

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCC--------------------------------------CEEEEEeCCHHHHHH
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIACPD--------------------------------------WKVTLLESMNKRCVF  114 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~~--------------------------------------~~v~~vD~s~~~~~~  114 (243)
                      ..++.+|||.|||+|.+++.+|....+                                      .+|+|+|+|+.+++.
T Consensus       193 ~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~  272 (385)
T 3ldu_A          193 WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDI  272 (385)
T ss_dssp             CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHH
T ss_pred             CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHH
Confidence            455789999999999999888876322                                      579999999999999


Q ss_pred             HHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEEEcCc--------ccHHHHHHHHccCccc--CeEEEEEeCC
Q 026122          115 LEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVARAV--------AEMRILAEYCLPLVRV--GGLFVAAKGH  181 (243)
Q Consensus       115 a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~--------~~~~~~l~~~~~~Lkp--gG~l~~~~~~  181 (243)
                      |++|++.+++. ++++.++|+.++...    .+||+|++|..        .+...+.+.+.+.|++  ||.++++.+.
T Consensus       273 Ar~Na~~~gl~~~i~~~~~D~~~l~~~----~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~  346 (385)
T 3ldu_A          273 ARENAEIAGVDEYIEFNVGDATQFKSE----DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYLITSY  346 (385)
T ss_dssp             HHHHHHHHTCGGGEEEEECCGGGCCCS----CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEEEESC
T ss_pred             HHHHHHHcCCCCceEEEECChhhcCcC----CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEEEECC
Confidence            99999999986 599999999997643    57999999842        2345566666666665  8898888874

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=99.30  E-value=1.1e-12  Score=110.92  Aligned_cols=97  Identities=19%  Similarity=0.037  Sum_probs=69.1

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHH---HHcCCCCEEEE--EccccccccCCcCCCCc
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAV---SLTQLLNVQIV--RGRAETLGKDVSFREQY  147 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~---~~~~~~~v~~~--~~d~~~~~~~~~~~~~f  147 (243)
                      ++++.+|||+|||+|..+..+++.   .+|+|||+++ ++..+++..   +..+ .++.++  ++|+.+++.     ++|
T Consensus        72 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~-m~~~a~~~~~~~~~~~-~~v~~~~~~~D~~~l~~-----~~f  141 (265)
T 2oxt_A           72 VELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYT-LGVGGHEVPRITESYG-WNIVKFKSRVDIHTLPV-----ERT  141 (265)
T ss_dssp             CCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEEC-CCCSSCCCCCCCCBTT-GGGEEEECSCCTTTSCC-----CCC
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECch-hhhhhhhhhhhhhccC-CCeEEEecccCHhHCCC-----CCC
Confidence            345889999999999999888865   6899999998 432221110   0011 168899  899988752     689


Q ss_pred             eEEEEcCc---cc----HH---HHHHHHccCcccCe--EEEEEe
Q 026122          148 DVAVARAV---AE----MR---ILAEYCLPLVRVGG--LFVAAK  179 (243)
Q Consensus       148 D~I~~~~~---~~----~~---~~l~~~~~~LkpgG--~l~~~~  179 (243)
                      |+|+|+..   ..    ..   .+++.+.++|||||  .+++-.
T Consensus       142 D~V~sd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv  185 (265)
T 2oxt_A          142 DVIMCDVGESSPKWSVESERTIKILELLEKWKVKNPSADFVVKV  185 (265)
T ss_dssp             SEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             cEEEEeCcccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEe
Confidence            99999642   11    11   37888999999999  888744

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.29  E-value=5.4e-12  Score=105.42  Aligned_cols=124  Identities=10%  Similarity=-0.042  Sum_probs=90.4

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      ....+|||||||+|.+++.++...|..+|+++|+|+.+++.+++++..+|+. .++...|...-...    ++||+++++
T Consensus       131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~-~~~~v~D~~~~~p~----~~~DvaL~l  205 (281)
T 3lcv_B          131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVP-HRTNVADLLEDRLD----EPADVTLLL  205 (281)
T ss_dssp             CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCC-EEEEECCTTTSCCC----SCCSEEEET
T ss_pred             CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEeeecccCCC----CCcchHHHH
Confidence            3477999999999999988888778999999999999999999999999986 78888888765442    789999997


Q ss_pred             Cccc------HHHHHHHHccCcccCeEEEEEe-----CCCcHH--H-HHHHHHHHHHhCCeeeE
Q 026122          154 AVAE------MRILAEYCLPLVRVGGLFVAAK-----GHDPQE--E-VKNSERAVQLMGASLLQ  203 (243)
Q Consensus       154 ~~~~------~~~~l~~~~~~LkpgG~l~~~~-----~~~~~~--~-~~~~~~~l~~~g~~~~~  203 (243)
                      -...      ....+ .+...|+++|.++-.-     |.....  . -..+.+.+...|..+.+
T Consensus       206 kti~~Le~q~kg~g~-~ll~aL~~~~vvVSfp~ksl~Grs~gm~~~Y~~~~e~~~~~~g~~~~~  268 (281)
T 3lcv_B          206 KTLPCLETQQRGSGW-EVIDIVNSPNIVVTFPTKSLGQRSKGMFQNYSQSFESQARERSCRIQR  268 (281)
T ss_dssp             TCHHHHHHHSTTHHH-HHHHHSSCSEEEEEEECC-------CHHHHHHHHHHHHHHHHTCCEEE
T ss_pred             HHHHHhhhhhhHHHH-HHHHHhCCCCEEEeccchhhcCCCcchhhHHHHHHHHHHHhcCCceee
Confidence            5321      12445 6788999999977432     221111  1 12344455667884443

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=99.21  E-value=5.9e-11  Score=101.66  Aligned_cols=73  Identities=19%  Similarity=0.222  Sum_probs=63.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      ++.+|||||||+|.++..++..  +.+|+|||+|+.+++.++++.+  +..+++++++|+.++....   .+||.|++|.
T Consensus        50 ~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~--~~~~v~vi~gD~l~~~~~~---~~fD~Iv~Nl  122 (295)
T 3gru_A           50 KDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKE--LYNNIEIIWGDALKVDLNK---LDFNKVVANL  122 (295)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHH--HCSSEEEEESCTTTSCGGG---SCCSEEEEEC
T ss_pred             CcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhc--cCCCeEEEECchhhCCccc---CCccEEEEeC
Confidence            3789999999999999999977  5799999999999999999887  3457999999999876542   4799999985

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.20  E-value=9.1e-11  Score=97.05  Aligned_cols=96  Identities=9%  Similarity=-0.057  Sum_probs=75.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      ++.+|||||||+|.+++.++   ++.+++|+|+|+.+++.+++++..++. +.++..+|....+..    ++||+|++.-
T Consensus       105 ~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g~-~~~~~v~D~~~~~~~----~~~DvvLllk  176 (253)
T 3frh_A          105 TPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKDW-DFTFALQDVLCAPPA----EAGDLALIFK  176 (253)
T ss_dssp             CCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTTC-EEEEEECCTTTSCCC----CBCSEEEEES
T ss_pred             CCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcCC-CceEEEeecccCCCC----CCcchHHHHH
Confidence            37899999999999976655   788999999999999999999988885 588999998876543    6899999863


Q ss_pred             cc------cHHHHHHHHccCcccCeEEEEEe
Q 026122          155 VA------EMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       155 ~~------~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      ..      .....+ .+...|+++|.++-.-
T Consensus       177 ~lh~LE~q~~~~~~-~ll~aL~~~~vvVsfP  206 (253)
T 3frh_A          177 LLPLLEREQAGSAM-ALLQSLNTPRMAVSFP  206 (253)
T ss_dssp             CHHHHHHHSTTHHH-HHHHHCBCSEEEEEEE
T ss_pred             HHHHhhhhchhhHH-HHHHHhcCCCEEEEcC
Confidence            21      112333 5556899998877543

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=99.16  E-value=2.2e-10  Score=96.29  Aligned_cols=138  Identities=17%  Similarity=0.161  Sum_probs=94.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHH-------CCC-----CEEEEEeCCH---HHH-----------HHHHHHHHH--------
Q 026122           76 NLKLVDVGTGAGLPGLVLAIA-------CPD-----WKVTLLESMN---KRC-----------VFLEHAVSL--------  121 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~-------~~~-----~~v~~vD~s~---~~~-----------~~a~~~~~~--------  121 (243)
                      ..+|||||||+|..++.+++.       .|+     .+++++|..+   +.+           +.+++..+.        
T Consensus        61 ~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g~  140 (257)
T 2qy6_A           61 LFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGC  140 (257)
T ss_dssp             EEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSEE
T ss_pred             CCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccch
Confidence            569999999999998776654       453     5899999876   333           355666554        


Q ss_pred             ----c--CCCCEEEEEccccccccCCc--CCCCceEEEEcCccc-------HHHHHHHHccCcccCeEEEEEeCCCcHHH
Q 026122          122 ----T--QLLNVQIVRGRAETLGKDVS--FREQYDVAVARAVAE-------MRILAEYCLPLVRVGGLFVAAKGHDPQEE  186 (243)
Q Consensus       122 ----~--~~~~v~~~~~d~~~~~~~~~--~~~~fD~I~~~~~~~-------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~  186 (243)
                          .  +..+++++.+|+.+......  ....||+|+..++..       ..++++.+.++|+|||.++.+...     
T Consensus       141 ~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~tysaa-----  215 (257)
T 2qy6_A          141 HRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFTSA-----  215 (257)
T ss_dssp             EEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEESCCB-----
T ss_pred             hheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEEEeCC-----
Confidence                1  12358899999988433210  012799999976431       378999999999999998864432     


Q ss_pred             HHHHHHHHHHhCCeeeEEEEEecCCCCCceEEEEEEee
Q 026122          187 VKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKS  224 (243)
Q Consensus       187 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~v~~~k~  224 (243)
                       ..+...|..+||.+.+.     ++....|.++...+.
T Consensus       216 -~~vrr~L~~aGF~v~~~-----~g~~~kr~m~~a~~~  247 (257)
T 2qy6_A          216 -GFVRRGLQEAGFTMQKR-----KGFGRKREMLCGVME  247 (257)
T ss_dssp             -HHHHHHHHHHTEEEEEE-----CCSTTCCCEEEEEEC
T ss_pred             -HHHHHHHHHCCCEEEeC-----CCCCCCCceEEEEec
Confidence             23566777899987643     455567777666553

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=99.12  E-value=1.2e-10  Score=100.12  Aligned_cols=79  Identities=11%  Similarity=0.097  Sum_probs=66.4

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccC-CcC-CCCceEEEE
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD-VSF-REQYDVAVA  152 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~-~~~fD~I~~  152 (243)
                      ++.+|||+|||+|..++.++...++++|+|+|+|+.+++.|+++++.++ .+++++++|+.+++.. ... ..+||.|++
T Consensus        26 ~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g-~~v~~v~~d~~~l~~~l~~~g~~~~D~Vl~  104 (301)
T 1m6y_A           26 DEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS-DRVSLFKVSYREADFLLKTLGIEKVDGILM  104 (301)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT-TTEEEEECCGGGHHHHHHHTTCSCEEEEEE
T ss_pred             CCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC-CcEEEEECCHHHHHHHHHhcCCCCCCEEEE
Confidence            3789999999999999999988877899999999999999999998887 6799999999886421 000 147999998


Q ss_pred             cC
Q 026122          153 RA  154 (243)
Q Consensus       153 ~~  154 (243)
                      +.
T Consensus       105 D~  106 (301)
T 1m6y_A          105 DL  106 (301)
T ss_dssp             EC
T ss_pred             cC
Confidence            64

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.12  E-value=2.1e-10  Score=96.37  Aligned_cols=74  Identities=19%  Similarity=0.162  Sum_probs=60.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcC-CCCceEEEEcC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSF-REQYDVAVARA  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~-~~~fD~I~~~~  154 (243)
                      +.+|||||||+|.++..++..  +.+|+|||+|+.+++.++++.+.  ..+++++++|+.+++..... .++|| |++|-
T Consensus        30 ~~~VLEIG~G~G~lt~~La~~--~~~V~avEid~~~~~~~~~~~~~--~~~v~~i~~D~~~~~~~~~~~~~~~~-vv~Nl  104 (255)
T 3tqs_A           30 TDTLVEIGPGRGALTDYLLTE--CDNLALVEIDRDLVAFLQKKYNQ--QKNITIYQNDALQFDFSSVKTDKPLR-VVGNL  104 (255)
T ss_dssp             TCEEEEECCTTTTTHHHHTTT--SSEEEEEECCHHHHHHHHHHHTT--CTTEEEEESCTTTCCGGGSCCSSCEE-EEEEC
T ss_pred             cCEEEEEcccccHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHhh--CCCcEEEEcchHhCCHHHhccCCCeE-EEecC
Confidence            789999999999999888865  47999999999999999988765  35799999999988653211 24688 77764

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=99.12  E-value=1.1e-10  Score=105.49  Aligned_cols=102  Identities=13%  Similarity=0.022  Sum_probs=82.4

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHC-------------CCCEEEEEeCCHHHHHHHHHHHHHcCCC--CEEEEEcccccccc
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIAC-------------PDWKVTLLESMNKRCVFLEHAVSLTQLL--NVQIVRGRAETLGK  139 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~-------------~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~~~  139 (243)
                      ++.+|+|.|||+|.+.+.++...             +..+++|+|+++.+++.|+.++...++.  ++.+.++|......
T Consensus       171 ~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~~~  250 (445)
T 2okc_A          171 MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKEP  250 (445)
T ss_dssp             TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSCC
T ss_pred             CCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCCcc
Confidence            36799999999999987777542             3468999999999999999999888885  68899999877543


Q ss_pred             CCcCCCCceEEEEcCc----c--c---------------HHHHHHHHccCcccCeEEEEEeC
Q 026122          140 DVSFREQYDVAVARAV----A--E---------------MRILAEYCLPLVRVGGLFVAAKG  180 (243)
Q Consensus       140 ~~~~~~~fD~I~~~~~----~--~---------------~~~~l~~~~~~LkpgG~l~~~~~  180 (243)
                      .    .+||+|++|..    .  .               ...+++.+.+.|+|||++.++.+
T Consensus       251 ~----~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p  308 (445)
T 2okc_A          251 S----TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP  308 (445)
T ss_dssp             S----SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             c----CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence            2    58999999731    0  0               14789999999999999988774

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=99.11  E-value=1e-10  Score=104.31  Aligned_cols=75  Identities=19%  Similarity=0.167  Sum_probs=63.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc--CCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT--QLLNVQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      +.+|||+|||+|..++.+++.  +.+|++||+|+.+++.+++|++.+  |+.+++++++|+.++.... ..++||+|+++
T Consensus        94 g~~VLDLgcG~G~~al~LA~~--g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~-~~~~fDvV~lD  170 (410)
T 3ll7_A           94 GTKVVDLTGGLGIDFIALMSK--ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLI-KTFHPDYIYVD  170 (410)
T ss_dssp             TCEEEESSCSSSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHH-HHHCCSEEEEC
T ss_pred             CCEEEEeCCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhc-cCCCceEEEEC
Confidence            789999999999999888865  579999999999999999999998  8878999999998852110 01479999995

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=99.09  E-value=2e-09  Score=89.62  Aligned_cols=72  Identities=21%  Similarity=0.228  Sum_probs=58.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      +.+|||||||+|.++..++...  .+|+|+|+|+.+++.++++.+.  ..+++++++|+.+++...  ...| .|++|-
T Consensus        31 ~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~--~~~v~~~~~D~~~~~~~~--~~~~-~vv~nl  102 (244)
T 1qam_A           31 HDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVD--HDNFQVLNKDILQFKFPK--NQSY-KIFGNI  102 (244)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTT--CCSEEEECCCGGGCCCCS--SCCC-EEEEEC
T ss_pred             CCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhcc--CCCeEEEEChHHhCCccc--CCCe-EEEEeC
Confidence            7899999999999999999774  7999999999999999888753  247999999999876531  1345 466653

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=99.08  E-value=6.4e-09  Score=88.62  Aligned_cols=146  Identities=17%  Similarity=0.168  Sum_probs=106.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc-----CCCCEEEEEccccccccCCcCCCCceEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT-----QLLNVQIVRGRAETLGKDVSFREQYDVA  150 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~-----~~~~v~~~~~d~~~~~~~~~~~~~fD~I  150 (243)
                      .++||=||.|.|..+..+.+..+..+|+.||+++..++.+++.....     .-++++++.+|...+....  .++||+|
T Consensus        84 pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~--~~~yDvI  161 (294)
T 3o4f_A           84 AKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQT--SQTFDVI  161 (294)
T ss_dssp             CCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCS--SCCEEEE
T ss_pred             CCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhc--cccCCEE
Confidence            68999999999999888876656679999999999999999886432     2346999999998876532  4789999


Q ss_pred             EEcCcc--------cHHHHHHHHccCcccCeEEEEEeC--CCcHHHHHHHHHHHHHhCCeeeEEEEEecCCCCC-ceEEE
Q 026122          151 VARAVA--------EMRILAEYCLPLVRVGGLFVAAKG--HDPQEEVKNSERAVQLMGASLLQLCSVESQSPFG-QRTAV  219 (243)
Q Consensus       151 ~~~~~~--------~~~~~l~~~~~~LkpgG~l~~~~~--~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~-~r~~v  219 (243)
                      +.....        --.++++.+++.|+|||.++.-.+  ....+.+..+.+.++.. |..+.......|.-++ .-..+
T Consensus       162 i~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~sp~~~~~~~~~~~~~l~~~-F~~v~~~~~~vPty~~g~w~f~  240 (294)
T 3o4f_A          162 ISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGVCFLQQEEAIDSHRKLSHY-FSDVGFYQAAIPTYYGGIMTFA  240 (294)
T ss_dssp             EESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEEESSSCCHHHHHHHHHHHHH-CSEEEEEEECCTTSSSSCEEEE
T ss_pred             EEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecCCcccChHHHHHHHHHHHhh-CCceeeeeeeeccCCCcceehe
Confidence            986421        136789999999999999887653  23345566666666665 5556655555565444 44455


Q ss_pred             EEEee
Q 026122          220 VCLKS  224 (243)
Q Consensus       220 ~~~k~  224 (243)
                      ++.|.
T Consensus       241 ~as~~  245 (294)
T 3o4f_A          241 WATDN  245 (294)
T ss_dssp             EEESC
T ss_pred             eEECC
Confidence            55543

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=99.08  E-value=3.1e-10  Score=106.03  Aligned_cols=96  Identities=16%  Similarity=0.104  Sum_probs=74.7

Q ss_pred             CCeEEEEcCCCChHH---HHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccccccCCcCCCCceEE
Q 026122           76 NLKLVDVGTGAGLPG---LVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVA  150 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~---~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~fD~I  150 (243)
                      ...|||+|||+|.+.   +..+.... ..+|+|||.|+ +...+++..+.+++.+ |+++++|++++..+    +++|+|
T Consensus       358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~~dkVtVI~gd~eev~LP----EKVDII  432 (637)
T 4gqb_A          358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEWGSQVTVVSSDMREWVAP----EKADII  432 (637)
T ss_dssp             EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTTGGGEEEEESCTTTCCCS----SCEEEE
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccCCCeEEEEeCcceeccCC----cccCEE
Confidence            357999999999984   34343321 23799999997 5667888899999865 99999999998654    789999


Q ss_pred             EEcCc------ccHHHHHHHHccCcccCeEEE
Q 026122          151 VARAV------AEMRILAEYCLPLVRVGGLFV  176 (243)
Q Consensus       151 ~~~~~------~~~~~~l~~~~~~LkpgG~l~  176 (243)
                      +|.-+      ....+++....+.|||||.++
T Consensus       433 VSEwMG~fLl~E~mlevL~Ardr~LKPgGimi  464 (637)
T 4gqb_A          433 VSELLGSFADNELSPECLDGAQHFLKDDGVSI  464 (637)
T ss_dssp             ECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred             EEEcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence            99531      123467888899999999977

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=99.06  E-value=1.8e-09  Score=87.37  Aligned_cols=113  Identities=15%  Similarity=-0.003  Sum_probs=81.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCC--C-CEEEEEcccccc---------------
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL--L-NVQIVRGRAETL---------------  137 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~-~v~~~~~d~~~~---------------  137 (243)
                      ..+|||+|||  ..++.+|+. ++++|+.||.+++..+.++++.++.|+  . +++++.+|+.+.               
T Consensus        31 a~~VLEiGtG--ySTl~lA~~-~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l  107 (202)
T 3cvo_A           31 AEVILEYGSG--GSTVVAAEL-PGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSY  107 (202)
T ss_dssp             CSEEEEESCS--HHHHHHHTS-TTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGT
T ss_pred             CCEEEEECch--HHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhH
Confidence            6799999984  677788864 478999999999999999999999996  3 699999997543               


Q ss_pred             cc------CCcCCCCceEEEEcCcccHHHHHHHHccCcccCeEEEEEe--CCCcHHHHHHHHH
Q 026122          138 GK------DVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAK--GHDPQEEVKNSER  192 (243)
Q Consensus       138 ~~------~~~~~~~fD~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~--~~~~~~~~~~~~~  192 (243)
                      +.      .....++||+|+..+-.. ...+..+.++|+|||.+++-.  ......++.++..
T Consensus       108 ~~~~~~i~~~~~~~~fDlIfIDg~k~-~~~~~~~l~~l~~GG~Iv~DNv~~r~~y~~v~~~~~  169 (202)
T 3cvo_A          108 PDYPLAVWRTEGFRHPDVVLVDGRFR-VGCALATAFSITRPVTLLFDDYSQRRWQHQVEEFLG  169 (202)
T ss_dssp             THHHHGGGGCTTCCCCSEEEECSSSH-HHHHHHHHHHCSSCEEEEETTGGGCSSGGGGHHHHC
T ss_pred             HHHhhhhhccccCCCCCEEEEeCCCc-hhHHHHHHHhcCCCeEEEEeCCcCCcchHHHHHHHh
Confidence            10      000126799999987432 355566779999999986522  1233445555544

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=99.06  E-value=6.1e-11  Score=99.78  Aligned_cols=76  Identities=16%  Similarity=0.104  Sum_probs=63.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCH-------HHHHHHHHHHHHcCCCC-EEEEEccccccccCCcCC--C
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMN-------KRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFR--E  145 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~-------~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~--~  145 (243)
                      +.+|||+|||+|..++.+|..  +++|+|+|+|+       .+++.++++++.+++.+ ++++++|+.++.... ..  +
T Consensus        84 ~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~-~~~~~  160 (258)
T 2r6z_A           84 HPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPAL-VKTQG  160 (258)
T ss_dssp             CCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHH-HHHHC
T ss_pred             cCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhh-hccCC
Confidence            689999999999999999975  57999999999       99999999988888755 999999998853210 01  4


Q ss_pred             CceEEEEcC
Q 026122          146 QYDVAVARA  154 (243)
Q Consensus       146 ~fD~I~~~~  154 (243)
                      +||+|+++.
T Consensus       161 ~fD~V~~dP  169 (258)
T 2r6z_A          161 KPDIVYLDP  169 (258)
T ss_dssp             CCSEEEECC
T ss_pred             CccEEEECC
Confidence            799999974

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=99.05  E-value=5.2e-10  Score=94.67  Aligned_cols=72  Identities=26%  Similarity=0.180  Sum_probs=60.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      ++ +|||||||+|.++..++..  +.+|+|+|+|+.+++.++++...   .+++++++|+.+++....  ..+|.|++|-
T Consensus        47 ~~-~VLEIG~G~G~lt~~L~~~--~~~V~avEid~~~~~~l~~~~~~---~~v~vi~~D~l~~~~~~~--~~~~~iv~Nl  118 (271)
T 3fut_A           47 TG-PVFEVGPGLGALTRALLEA--GAEVTAIEKDLRLRPVLEETLSG---LPVRLVFQDALLYPWEEV--PQGSLLVANL  118 (271)
T ss_dssp             CS-CEEEECCTTSHHHHHHHHT--TCCEEEEESCGGGHHHHHHHTTT---SSEEEEESCGGGSCGGGS--CTTEEEEEEE
T ss_pred             CC-eEEEEeCchHHHHHHHHHc--CCEEEEEECCHHHHHHHHHhcCC---CCEEEEECChhhCChhhc--cCccEEEecC
Confidence            37 9999999999999999876  47999999999999999887652   479999999998765321  3689999974

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.03  E-value=1.3e-09  Score=103.64  Aligned_cols=107  Identities=10%  Similarity=-0.021  Sum_probs=82.1

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHC------------------------------------------CCCEEEEEeCCHH
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIAC------------------------------------------PDWKVTLLESMNK  110 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~------------------------------------------~~~~v~~vD~s~~  110 (243)
                      .+++..|||.+||||.+++.+|...                                          +..+|+|+|+++.
T Consensus       188 ~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~  267 (703)
T 3v97_A          188 WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDAR  267 (703)
T ss_dssp             CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHH
T ss_pred             CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHH
Confidence            3457899999999999998887652                                          2358999999999


Q ss_pred             HHHHHHHHHHHcCCCC-EEEEEccccccccCCcCCCCceEEEEcCc--------ccHHHHHHHHcc---CcccCeEEEEE
Q 026122          111 RCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAVARAV--------AEMRILAEYCLP---LVRVGGLFVAA  178 (243)
Q Consensus       111 ~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~fD~I~~~~~--------~~~~~~l~~~~~---~LkpgG~l~~~  178 (243)
                      +++.|+.|++..|+.+ +++.++|+.++.... ..++||+|++|..        .+...+.+.+.+   .+.|||.+++.
T Consensus       268 av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~-~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~~~g~~~~il  346 (703)
T 3v97_A          268 VIQRARTNARLAGIGELITFEVKDVAQLTNPL-PKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFGGWNLSLF  346 (703)
T ss_dssp             HHHHHHHHHHHTTCGGGEEEEECCGGGCCCSC-TTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred             HHHHHHHHHHHcCCCCceEEEECChhhCcccc-ccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhhCCCCeEEEE
Confidence            9999999999999976 999999999875321 1137999999841        134444544444   44579999988


Q ss_pred             eC
Q 026122          179 KG  180 (243)
Q Consensus       179 ~~  180 (243)
                      .+
T Consensus       347 t~  348 (703)
T 3v97_A          347 SA  348 (703)
T ss_dssp             ES
T ss_pred             eC
Confidence            76

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=99.02  E-value=1.6e-09  Score=95.14  Aligned_cols=107  Identities=14%  Similarity=0.057  Sum_probs=86.7

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CCEEEEEccccccccCCcCCCC
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL------LNVQIVRGRAETLGKDVSFREQ  146 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------~~v~~~~~d~~~~~~~~~~~~~  146 (243)
                      .++|.+|||++||+|.-+..+|....+..|+++|+++..++.+++++++++.      .++++.+.|...+....  .+.
T Consensus       146 ~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~--~~~  223 (359)
T 4fzv_A          146 LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELE--GDT  223 (359)
T ss_dssp             CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHS--TTC
T ss_pred             CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhc--ccc
Confidence            4578899999999999998888876667899999999999999999998865      35889999988765321  368


Q ss_pred             ceEEEEcCc------c----------------------cHHHHHHHHccCcccCeEEEEEeCC
Q 026122          147 YDVAVARAV------A----------------------EMRILAEYCLPLVRVGGLFVAAKGH  181 (243)
Q Consensus       147 fD~I~~~~~------~----------------------~~~~~l~~~~~~LkpgG~l~~~~~~  181 (243)
                      ||.|+..+.      .                      -...+++.+.+.|||||+|+...+.
T Consensus       224 fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCS  286 (359)
T 4fzv_A          224 YDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCS  286 (359)
T ss_dssp             EEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESC
T ss_pred             CCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCC
Confidence            999998420      0                      1357888999999999999988754

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=99.01  E-value=1.1e-11  Score=103.34  Aligned_cols=71  Identities=17%  Similarity=0.149  Sum_probs=57.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      +.+|||+|||+|.++..++...  .+|+|+|+|+.+++.++++.+  ...+++++++|+.+++...  .++| .|++|
T Consensus        30 ~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~~--~~~~v~~~~~D~~~~~~~~--~~~f-~vv~n  100 (245)
T 1yub_A           30 TDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLK--LNTRVTLIHQDILQFQFPN--KQRY-KIVGN  100 (245)
T ss_dssp             SEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTT--TCSEEEECCSCCTTTTCCC--SSEE-EEEEE
T ss_pred             CCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHhc--cCCceEEEECChhhcCccc--CCCc-EEEEe
Confidence            7799999999999999999773  799999999999988887665  3346999999999876431  1468 67776

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.98  E-value=2.1e-09  Score=91.34  Aligned_cols=75  Identities=15%  Similarity=0.038  Sum_probs=58.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCC-C--CceEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPD--WKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFR-E--QYDVA  150 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~-~--~fD~I  150 (243)
                      +.+|||||||+|.++..++...+.  .+|+|+|+|+.+++.++++.    ..+++++++|+.+++...... .  ..+.|
T Consensus        43 ~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~----~~~v~~i~~D~~~~~~~~~~~~~~~~~~~v  118 (279)
T 3uzu_A           43 GERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF----GELLELHAGDALTFDFGSIARPGDEPSLRI  118 (279)
T ss_dssp             TCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH----GGGEEEEESCGGGCCGGGGSCSSSSCCEEE
T ss_pred             cCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc----CCCcEEEECChhcCChhHhcccccCCceEE
Confidence            789999999999999999977432  44999999999999999883    346999999999986542111 0  34567


Q ss_pred             EEcC
Q 026122          151 VARA  154 (243)
Q Consensus       151 ~~~~  154 (243)
                      ++|-
T Consensus       119 v~Nl  122 (279)
T 3uzu_A          119 IGNL  122 (279)
T ss_dssp             EEEC
T ss_pred             EEcc
Confidence            7774

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.95  E-value=1.9e-09  Score=100.95  Aligned_cols=100  Identities=15%  Similarity=0.066  Sum_probs=72.8

Q ss_pred             CCeEEEEcCCCChHHHHH---HH-HC---------CCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccccccC-
Q 026122           76 NLKLVDVGTGAGLPGLVL---AI-AC---------PDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKD-  140 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~l---a~-~~---------~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~-  140 (243)
                      +..|||||||+|.++...   +. ..         ...+|+|||.|+.++..++.... +++.+ |+++++|++++... 
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~d~VtVI~gd~eev~lp~  488 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWKRRVTIIESDMRSLPGIA  488 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTTTCSEEEESCGGGHHHHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCCCeEEEEeCchhhccccc
Confidence            357999999999996332   21 11         23599999999987765555443 77765 99999999998651 


Q ss_pred             -CcCCCCceEEEEcCcc------cHHHHHHHHccCcccCeEEE
Q 026122          141 -VSFREQYDVAVARAVA------EMRILAEYCLPLVRVGGLFV  176 (243)
Q Consensus       141 -~~~~~~fD~I~~~~~~------~~~~~l~~~~~~LkpgG~l~  176 (243)
                       ....++.|+|+|.-..      -..+.+..+.+.|||||.++
T Consensus       489 ~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i  531 (745)
T 3ua3_A          489 KDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISI  531 (745)
T ss_dssp             HHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred             ccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEE
Confidence             0012789999996422      24578888899999999977

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.94  E-value=3.4e-09  Score=88.62  Aligned_cols=72  Identities=18%  Similarity=0.107  Sum_probs=56.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      +.+|||||||+|.++..++.. +..+|+|||+|+.+++.++++    +..+++++++|+.+++.... .+. ..|++|-
T Consensus        32 ~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~----~~~~v~~i~~D~~~~~~~~~-~~~-~~vv~Nl  103 (249)
T 3ftd_A           32 GNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSI----GDERLEVINEDASKFPFCSL-GKE-LKVVGNL  103 (249)
T ss_dssp             TCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTS----CCTTEEEECSCTTTCCGGGS-CSS-EEEEEEC
T ss_pred             cCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhc----cCCCeEEEEcchhhCChhHc-cCC-cEEEEEC
Confidence            789999999999999888865 458999999999999998876    23479999999998865421 122 3666664

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.93  E-value=1.7e-09  Score=99.93  Aligned_cols=104  Identities=9%  Similarity=-0.044  Sum_probs=81.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCC------------------CCEEEEEeCCHHHHHHHHHHHHHcCCCC-----EEEEE
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACP------------------DWKVTLLESMNKRCVFLEHAVSLTQLLN-----VQIVR  131 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~------------------~~~v~~vD~s~~~~~~a~~~~~~~~~~~-----v~~~~  131 (243)
                      ++.+|+|.|||||.+.+.++....                  ..+++|+|+++.+++.|+.++...++.+     +.+.+
T Consensus       169 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~~  248 (541)
T 2ar0_A          169 PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRL  248 (541)
T ss_dssp             TTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEE
T ss_pred             CCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeEe
Confidence            467999999999998877765421                  2479999999999999999998888765     78999


Q ss_pred             ccccccccCCcCCCCceEEEEcCc-----------------c-cHHHHHHHHccCcccCeEEEEEeC
Q 026122          132 GRAETLGKDVSFREQYDVAVARAV-----------------A-EMRILAEYCLPLVRVGGLFVAAKG  180 (243)
Q Consensus       132 ~d~~~~~~~~~~~~~fD~I~~~~~-----------------~-~~~~~l~~~~~~LkpgG~l~~~~~  180 (243)
                      +|........  .++||+|++|..                 . ....+++.+.+.|+|||++.++.+
T Consensus       249 gDtL~~~~~~--~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p  313 (541)
T 2ar0_A          249 GNTLGSDGEN--LPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVP  313 (541)
T ss_dssp             SCTTSHHHHT--SCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCccccccc--ccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEec
Confidence            9986643211  267999999741                 0 124789999999999999988764

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.88  E-value=4.5e-08  Score=90.39  Aligned_cols=148  Identities=11%  Similarity=-0.008  Sum_probs=99.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHC---CCCEEEEEeCCHHHHHHHHHHHHHcCC--CCEEEEEcccccc--ccCCcCCCCc
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIAC---PDWKVTLLESMNKRCVFLEHAVSLTQL--LNVQIVRGRAETL--GKDVSFREQY  147 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~---~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~v~~~~~d~~~~--~~~~~~~~~f  147 (243)
                      ++.+|+|.+||||.+.+.++...   +..+++|+|+++.++..|+.++..+|+  .++.+.++|....  +..  ...+|
T Consensus       221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~--~~~~f  298 (542)
T 3lkd_A          221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQ--EPTNF  298 (542)
T ss_dssp             TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCS--SCCCB
T ss_pred             CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceeccccccc--ccccc
Confidence            47799999999999887777663   357999999999999999999998888  4689999998765  221  12689


Q ss_pred             eEEEEcC-----c-------cc---------------HHHHHHHHccCcc-cCeEEEEEeCCCcH---HHHHHHHHHHHH
Q 026122          148 DVAVARA-----V-------AE---------------MRILAEYCLPLVR-VGGLFVAAKGHDPQ---EEVKNSERAVQL  196 (243)
Q Consensus       148 D~I~~~~-----~-------~~---------------~~~~l~~~~~~Lk-pgG~l~~~~~~~~~---~~~~~~~~~l~~  196 (243)
                      |+|++|.     .       .+               -..+++.+.+.|+ +||++.++.+....   ..-..+++.+-+
T Consensus       299 D~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~g~Lf~~~~~~~iRk~Lle  378 (542)
T 3lkd_A          299 DGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPHGVLFRGNAEGTIRKALLE  378 (542)
T ss_dssp             SEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEETHHHHCCTHHHHHHHHHHH
T ss_pred             cEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecchHhhCCchhHHHHHHHHh
Confidence            9999972     0       00               1248899999999 99999887753221   122445555545


Q ss_pred             hCCeeeEEEEEe---cCCCCCceEEEEEEeeC
Q 026122          197 MGASLLQLCSVE---SQSPFGQRTAVVCLKSR  225 (243)
Q Consensus       197 ~g~~~~~~~~~~---~~~~~~~r~~v~~~k~~  225 (243)
                      .+. +..+..+.   +....-.-.+++++|..
T Consensus       379 ~~~-l~~II~LP~~lF~~t~i~t~Ilvl~K~k  409 (542)
T 3lkd_A          379 EGA-IDTVIGLPANIFFNTSIPTTVIILKKNR  409 (542)
T ss_dssp             TTC-EEEEEECCSSCSSSCCCCEEEEEECSSC
T ss_pred             CCc-eeEEEEccccccCCCCCcEEEEEEecCC
Confidence            443 33332222   11222245555666553

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.88  E-value=1.2e-08  Score=97.08  Aligned_cols=105  Identities=12%  Similarity=0.040  Sum_probs=77.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCC---CCEEEEEeCCHHHHHHH--HHHHHH----cCCCCEEEEEccccccccCCcCCC
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACP---DWKVTLLESMNKRCVFL--EHAVSL----TQLLNVQIVRGRAETLGKDVSFRE  145 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~---~~~v~~vD~s~~~~~~a--~~~~~~----~~~~~v~~~~~d~~~~~~~~~~~~  145 (243)
                      ++.+|+|.|||+|.+.+.++...+   ..+++|+|+++.+++.|  +.++..    .+..+..+...|+.+....  ...
T Consensus       321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~--~~~  398 (878)
T 3s1s_A          321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPE--DFA  398 (878)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGG--GGT
T ss_pred             CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhccccc--ccC
Confidence            378999999999999888887654   35899999999999999  555544    2333346666676653221  126


Q ss_pred             CceEEEEcCc-------c--------------------------cHHHHHHHHccCcccCeEEEEEeCC
Q 026122          146 QYDVAVARAV-------A--------------------------EMRILAEYCLPLVRVGGLFVAAKGH  181 (243)
Q Consensus       146 ~fD~I~~~~~-------~--------------------------~~~~~l~~~~~~LkpgG~l~~~~~~  181 (243)
                      +||+|++|-.       .                          -...+++.+.+.|++||++.++.+.
T Consensus       399 kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~  467 (878)
T 3s1s_A          399 NVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPK  467 (878)
T ss_dssp             TEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEET
T ss_pred             CCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEECh
Confidence            8999999730       0                          0345788899999999999988864

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.87  E-value=5e-09  Score=87.75  Aligned_cols=75  Identities=15%  Similarity=-0.025  Sum_probs=55.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcC--CCCceEEEEc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSF--REQYDVAVAR  153 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~--~~~fD~I~~~  153 (243)
                      +.+|||||||+|.++. ++. .+..+|+|+|+|+.+++.++++.+..  .+++++++|+.+++.....  .+..|.|++|
T Consensus        22 ~~~VLEIG~G~G~lt~-l~~-~~~~~v~avEid~~~~~~a~~~~~~~--~~v~~i~~D~~~~~~~~~~~~~~~~~~vvsN   97 (252)
T 1qyr_A           22 GQAMVEIGPGLAALTE-PVG-ERLDQLTVIELDRDLAARLQTHPFLG--PKLTIYQQDAMTFNFGELAEKMGQPLRVFGN   97 (252)
T ss_dssp             TCCEEEECCTTTTTHH-HHH-TTCSCEEEECCCHHHHHHHHTCTTTG--GGEEEECSCGGGCCHHHHHHHHTSCEEEEEE
T ss_pred             cCEEEEECCCCcHHHH-hhh-CCCCeEEEEECCHHHHHHHHHHhccC--CceEEEECchhhCCHHHhhcccCCceEEEEC
Confidence            7899999999999998 653 32223999999999999998876432  4799999999987542110  0235788887


Q ss_pred             C
Q 026122          154 A  154 (243)
Q Consensus       154 ~  154 (243)
                      .
T Consensus        98 l   98 (252)
T 1qyr_A           98 L   98 (252)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=98.87  E-value=2.3e-08  Score=84.86  Aligned_cols=125  Identities=13%  Similarity=-0.001  Sum_probs=91.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC-----CCCEEEEEeCCHH--------------------------HHHHHHHHHHHcCC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC-----PDWKVTLLESMNK--------------------------RCVFLEHAVSLTQL  124 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~-----~~~~v~~vD~s~~--------------------------~~~~a~~~~~~~~~  124 (243)
                      .+.|||+||..|..++.+|...     ++.+|+++|..+.                          .++.+++++++.|+
T Consensus       107 pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~gl  186 (282)
T 2wk1_A          107 PGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYDL  186 (282)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTTC
T ss_pred             CCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcCC
Confidence            6799999999999988887653     4789999996421                          36778999999998


Q ss_pred             --CCEEEEEccccccccCCcCCCCceEEEEcCcc--cHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCe
Q 026122          125 --LNVQIVRGRAETLGKDVSFREQYDVAVARAVA--EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGAS  200 (243)
Q Consensus       125 --~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~  200 (243)
                        ++++++.+++.+..... ..++||+|+..+..  .....++.+.+.|+|||.+++-.-.......+.+.+..+..|+.
T Consensus       187 ~~~~I~li~Gda~etL~~~-~~~~~d~vfIDaD~y~~~~~~Le~~~p~L~pGGiIv~DD~~~~~G~~~Av~Ef~~~~~i~  265 (282)
T 2wk1_A          187 LDEQVRFLPGWFKDTLPTA-PIDTLAVLRMDGDLYESTWDTLTNLYPKVSVGGYVIVDDYMMCPPCKDAVDEYRAKFDIA  265 (282)
T ss_dssp             CSTTEEEEESCHHHHSTTC-CCCCEEEEEECCCSHHHHHHHHHHHGGGEEEEEEEEESSCTTCHHHHHHHHHHHHHTTCC
T ss_pred             CcCceEEEEeCHHHHHhhC-CCCCEEEEEEcCCccccHHHHHHHHHhhcCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCc
Confidence              56999999998754321 13689999997633  35678999999999999877633222234444455555677765


Q ss_pred             e
Q 026122          201 L  201 (243)
Q Consensus       201 ~  201 (243)
                      .
T Consensus       266 ~  266 (282)
T 2wk1_A          266 D  266 (282)
T ss_dssp             S
T ss_pred             e
Confidence            4

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.85  E-value=3.5e-09  Score=88.96  Aligned_cols=93  Identities=18%  Similarity=0.201  Sum_probs=65.1

Q ss_pred             CeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc-------C-C-CCEEEEEccccccccCCcCCCCc
Q 026122           77 LKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT-------Q-L-LNVQIVRGRAETLGKDVSFREQY  147 (243)
Q Consensus        77 ~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~-~-~~v~~~~~d~~~~~~~~~~~~~f  147 (243)
                      .+|||+|||+|..++.+|..  +++|++||+++.+++.+++++++.       + + .+++++++|..++...  ..++|
T Consensus        90 ~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~--~~~~f  165 (258)
T 2oyr_A           90 PDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD--ITPRP  165 (258)
T ss_dssp             CCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTT--CSSCC
T ss_pred             CEEEEcCCcCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHh--CcccC
Confidence            89999999999999999977  568999999999888888776543       2 3 4699999999886432  12479


Q ss_pred             eEEEEcCc---ccHHHHHHHHccCcccCe
Q 026122          148 DVAVARAV---AEMRILAEYCLPLVRVGG  173 (243)
Q Consensus       148 D~I~~~~~---~~~~~~l~~~~~~LkpgG  173 (243)
                      |+|+++..   ..-...+++..+.|++.+
T Consensus       166 DvV~lDP~y~~~~~saavkk~~~~lr~l~  194 (258)
T 2oyr_A          166 QVVYLDPMFPHKQKSALVKKEMRVFQSLV  194 (258)
T ss_dssp             SEEEECCCCCCCCC-----HHHHHHHHHS
T ss_pred             CEEEEcCCCCCcccchHHHHHHHHHHHhh
Confidence            99999641   111233444445555533

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.76  E-value=1.8e-08  Score=93.07  Aligned_cols=146  Identities=8%  Similarity=-0.081  Sum_probs=94.7

Q ss_pred             CeEEEEcCCCChHHHHHHHHCC---------------CCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccC
Q 026122           77 LKLVDVGTGAGLPGLVLAIACP---------------DWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKD  140 (243)
Q Consensus        77 ~~VLDiGcG~G~~~~~la~~~~---------------~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~  140 (243)
                      .+|+|.+||||.+.+.++....               ..+++|+|+++.++..|+.++..+++. ++.+.++|....+..
T Consensus       246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~~  325 (544)
T 3khk_A          246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQH  325 (544)
T ss_dssp             EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCSC
T ss_pred             CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCccc
Confidence            4999999999998766654321               468999999999999999999888875 344477886654322


Q ss_pred             CcCCCCceEEEEcC---cc------------------------------cHHHHHHHHccCcccCeEEEEEeCCCc----
Q 026122          141 VSFREQYDVAVARA---VA------------------------------EMRILAEYCLPLVRVGGLFVAAKGHDP----  183 (243)
Q Consensus       141 ~~~~~~fD~I~~~~---~~------------------------------~~~~~l~~~~~~LkpgG~l~~~~~~~~----  183 (243)
                      .  ..+||+|++|.   ..                              .--.+++.+.+.|+|||++.++.+...    
T Consensus       326 ~--~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~g~L~~~  403 (544)
T 3khk_A          326 P--DLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLANGSMSSN  403 (544)
T ss_dssp             T--TCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEETHHHHCC
T ss_pred             c--cccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEecchhhhcC
Confidence            1  26899999973   00                              012688999999999999888774321    


Q ss_pred             HHHHHHHHHHHHHhCCeeeEEEEEe---cCCCCCceEEEEEEeeC
Q 026122          184 QEEVKNSERAVQLMGASLLQLCSVE---SQSPFGQRTAVVCLKSR  225 (243)
Q Consensus       184 ~~~~~~~~~~l~~~g~~~~~~~~~~---~~~~~~~r~~v~~~k~~  225 (243)
                      ......+++.+-+.+. +..+..+.   +....-.-.+++++|..
T Consensus       404 ~~~~~~iRk~Lle~~~-l~aII~LP~~lF~~t~i~t~Ilvl~K~k  447 (544)
T 3khk_A          404 TNNEGEIRKTLVEQDL-VECMVALPGQLFTNTQIPACIWFLTKDK  447 (544)
T ss_dssp             GGGHHHHHHHHHHTTC-EEEEEECCTTBCCSCSSCEEEEEEESCC
T ss_pred             cchHHHHHHHHHhCCc-HhEEEECCCCCCCCCCCCeEEEEEecCC
Confidence            1123445555555553 33332222   11222245566666654

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.62  E-value=3e-08  Score=83.22  Aligned_cols=119  Identities=11%  Similarity=-0.012  Sum_probs=72.4

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEE
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      ++++.+|||+|||+|..+..++...+..+|+|+|+...+...... ....+. ++..+.++++.....   .++||+|+|
T Consensus        72 l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~-~~~~g~-~ii~~~~~~dv~~l~---~~~~DlVls  146 (277)
T 3evf_A           72 VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMN-VQSLGW-NIITFKDKTDIHRLE---PVKCDTLLC  146 (277)
T ss_dssp             SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCC-CCBTTG-GGEEEECSCCTTTSC---CCCCSEEEE
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccc-cCcCCC-CeEEEeccceehhcC---CCCccEEEe
Confidence            456789999999999999777766555688999987432000000 000111 444456655433322   268999999


Q ss_pred             cCccc----------HHHHHHHHccCcccC-eEEEEEeCCCcHHHHHHHHHHHHH
Q 026122          153 RAVAE----------MRILAEYCLPLVRVG-GLFVAAKGHDPQEEVKNSERAVQL  196 (243)
Q Consensus       153 ~~~~~----------~~~~l~~~~~~Lkpg-G~l~~~~~~~~~~~~~~~~~~l~~  196 (243)
                      ...++          ...+++.+.++|+|| |.|++-.=....++..++++.++.
T Consensus       147 D~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~pyg~~~~~l~~~lk~  201 (277)
T 3evf_A          147 DIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLAPYMPDVLEKLELLQR  201 (277)
T ss_dssp             CCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHHHHH
T ss_pred             cCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCccHHHHHHHHHH
Confidence            64211          123578889999999 998873322114555566655554

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=98.58  E-value=2.3e-06  Score=74.85  Aligned_cols=117  Identities=15%  Similarity=0.047  Sum_probs=80.7

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEE
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      +++|.+|||+||++|..+..+++.  +++|+|||+.+-    . ....  ...+|+++++|........   .++|+|+|
T Consensus       209 l~~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~l----~-~~l~--~~~~V~~~~~d~~~~~~~~---~~~D~vvs  276 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGPM----A-QSLM--DTGQVTWLREDGFKFRPTR---SNISWMVC  276 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHHHHHT--TCEEEEECSSCC----C-HHHH--TTTCEEEECSCTTTCCCCS---SCEEEEEE
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhhc----C-hhhc--cCCCeEEEeCccccccCCC---CCcCEEEE
Confidence            467999999999999999888765  579999998751    1 1111  2357999999998876542   67999999


Q ss_pred             cCcccHHHHHHHHccCcccC---eEEEEEeCC--CcHHHH----HHHHHHHHHhCCee
Q 026122          153 RAVAEMRILAEYCLPLVRVG---GLFVAAKGH--DPQEEV----KNSERAVQLMGASL  201 (243)
Q Consensus       153 ~~~~~~~~~l~~~~~~Lkpg---G~l~~~~~~--~~~~~~----~~~~~~l~~~g~~~  201 (243)
                      .....+....+.+.++|..+   +.++...-.  ...+++    ..+.+.++..|+..
T Consensus       277 Dm~~~p~~~~~l~~~wl~~~~~~~aI~~lKL~mk~~~~~l~~~~~~i~~~l~~~g~~~  334 (375)
T 4auk_A          277 DMVEKPAKVAALMAQWLVNGWCRETIFNLKLPMKKRYEEVSHNLAYIQAQLDEHGINA  334 (375)
T ss_dssp             CCSSCHHHHHHHHHHHHHTTSCSEEEEEEECCSSSHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred             cCCCChHHhHHHHHHHHhccccceEEEEEEecccchHHHHHHHHHHHHHHHHhcCcch
Confidence            88777777777776666654   555544422  222333    33445566778754

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=98.54  E-value=9.3e-07  Score=77.65  Aligned_cols=122  Identities=11%  Similarity=0.068  Sum_probs=87.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH-----cCC---CCEEEEEccccccccC-CcCCC
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSL-----TQL---LNVQIVRGRAETLGKD-VSFRE  145 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~-----~~~---~~v~~~~~d~~~~~~~-~~~~~  145 (243)
                      ++.+||=||.|.|..+..+.+ ++..+|+.||+++..++.+++....     ...   ++++++.+|..++... ....+
T Consensus       205 ~pkrVLIIGgGdG~~~revlk-h~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~  283 (381)
T 3c6k_A          205 TGKDVLILGGGDGGILCEIVK-LKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR  283 (381)
T ss_dssp             TTCEEEEEECTTCHHHHHHHT-TCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred             CCCeEEEECCCcHHHHHHHHh-cCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence            367999999999999877765 4568999999999999999986432     111   2489999998765321 00125


Q ss_pred             CceEEEEcCcc--------------cHHHHHHHHccCcccCeEEEEEe-CCCcHHHHHHHHHHHHHh
Q 026122          146 QYDVAVARAVA--------------EMRILAEYCLPLVRVGGLFVAAK-GHDPQEEVKNSERAVQLM  197 (243)
Q Consensus       146 ~fD~I~~~~~~--------------~~~~~l~~~~~~LkpgG~l~~~~-~~~~~~~~~~~~~~l~~~  197 (243)
                      +||+|+.....              -..++++.+++.|+|||.++.-. +.+..+.+..+.+.+++.
T Consensus       284 ~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s~~~~~~~~~i~~tl~~v  350 (381)
T 3c6k_A          284 EFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNCVNLTEALSLYEEQLGRL  350 (381)
T ss_dssp             CEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEEETTCHHHHHHHHHHHTTS
T ss_pred             ceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecCCCcchhHHHHHHHHHHHh
Confidence            79999986311              12678899999999999987654 344455566666666665

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=98.51  E-value=5.1e-08  Score=81.92  Aligned_cols=117  Identities=12%  Similarity=-0.059  Sum_probs=71.2

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEc--cccccccCCcCCCCceEE
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRG--RAETLGKDVSFREQYDVA  150 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~--d~~~~~~~~~~~~~fD~I  150 (243)
                      ++++.+|||+|||+|..+..++...+..+|+|+|+...+...+... +..+. ++.....  |+.++.     ..++|+|
T Consensus        88 Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~-~~~g~-~ii~~~~~~dv~~l~-----~~~~DvV  160 (282)
T 3gcz_A           88 VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMR-TTLGW-NLIRFKDKTDVFNME-----VIPGDTL  160 (282)
T ss_dssp             CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC-CBTTG-GGEEEECSCCGGGSC-----CCCCSEE
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccc-ccCCC-ceEEeeCCcchhhcC-----CCCcCEE
Confidence            4568899999999999998777666667899999986421111100 01121 3333333  333332     2689999


Q ss_pred             EEcCccc----------HHHHHHHHccCcccC--eEEEEEeCCCcHHHHHHHHHHHHH
Q 026122          151 VARAVAE----------MRILAEYCLPLVRVG--GLFVAAKGHDPQEEVKNSERAVQL  196 (243)
Q Consensus       151 ~~~~~~~----------~~~~l~~~~~~Lkpg--G~l~~~~~~~~~~~~~~~~~~l~~  196 (243)
                      +|...++          ...+++-+.++|+||  |.|++-.=....++..++++.++.
T Consensus       161 LSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~pyg~~~~~l~~~lk~  218 (282)
T 3gcz_A          161 LCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLCPYTPLIMEELSRLQL  218 (282)
T ss_dssp             EECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESCCCSHHHHHHHHHHHH
T ss_pred             EecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecCCCccHHHHHHHHHH
Confidence            9964211          123577888999999  998874322114455555555554

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=98.41  E-value=9.1e-07  Score=72.38  Aligned_cols=122  Identities=16%  Similarity=0.034  Sum_probs=79.5

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEc-cccccccCCcCCCCceEEE
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRG-RAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~fD~I~  151 (243)
                      ++++.+|+|+||++|..+...+...+..+|+|+|+-..-.+. -...+.+|.+.++|+.+ |+..++.     .++|.|+
T Consensus        76 l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~-P~~~~s~gwn~v~fk~gvDv~~~~~-----~~~Dtll  149 (267)
T 3p8z_A           76 VIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEE-PVPMSTYGWNIVKLMSGKDVFYLPP-----EKCDTLL  149 (267)
T ss_dssp             SCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCC-CCCCCCTTTTSEEEECSCCGGGCCC-----CCCSEEE
T ss_pred             CCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccC-cchhhhcCcCceEEEeccceeecCC-----ccccEEE
Confidence            456889999999999999878877666689999987531110 00123456677999999 9877654     5699999


Q ss_pred             EcC-----cc--c---HHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHH-HhCCee
Q 026122          152 ARA-----VA--E---MRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQ-LMGASL  201 (243)
Q Consensus       152 ~~~-----~~--~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~-~~g~~~  201 (243)
                      |..     ..  +   -..+++.+.++|++ |.+++-.=.....++.+.++.++ .+|-..
T Consensus       150 cDIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py~p~v~e~l~~lq~~fgg~l  209 (267)
T 3p8z_A          150 CDIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPYMPTVIEHLERLQRKHGGML  209 (267)
T ss_dssp             ECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCCSHHHHHHHHHHHHHHCCEE
T ss_pred             EecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccCCChhHHHHHHHHHHHhCCEe
Confidence            953     11  1   13377888899999 67666432222333334444333 556543

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.39  E-value=3.6e-07  Score=69.50  Aligned_cols=83  Identities=16%  Similarity=0.127  Sum_probs=57.6

Q ss_pred             CCeEEEEcCCCC-hHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEE-c
Q 026122           76 NLKLVDVGTGAG-LPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA-R  153 (243)
Q Consensus        76 ~~~VLDiGcG~G-~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~-~  153 (243)
                      +.+|||||||+| .++..|+... +..|+++|+++.+++               +++.|+.+....  .-+.||+|.+ |
T Consensus        36 ~~rVlEVG~G~g~~vA~~La~~~-g~~V~atDInp~Av~---------------~v~dDiF~P~~~--~Y~~~DLIYsir   97 (153)
T 2k4m_A           36 GTRVVEVGAGRFLYVSDYIRKHS-KVDLVLTDIKPSHGG---------------IVRDDITSPRME--IYRGAALIYSIR   97 (153)
T ss_dssp             SSEEEEETCTTCCHHHHHHHHHS-CCEEEEECSSCSSTT---------------EECCCSSSCCHH--HHTTEEEEEEES
T ss_pred             CCcEEEEccCCChHHHHHHHHhC-CCeEEEEECCccccc---------------eEEccCCCCccc--ccCCcCEEEEcC
Confidence            679999999999 5998998653 689999999997544               888898774321  1147999976 5


Q ss_pred             CcccHHHHHHHHccCcccCeEEEEE
Q 026122          154 AVAEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       154 ~~~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                      ...++...+-.+.+.+  |.-+++.
T Consensus        98 PP~El~~~i~~lA~~v--~adliI~  120 (153)
T 2k4m_A           98 PPAEIHSSLMRVADAV--GARLIIK  120 (153)
T ss_dssp             CCTTTHHHHHHHHHHH--TCEEEEE
T ss_pred             CCHHHHHHHHHHHHHc--CCCEEEE
Confidence            4555544444444433  4455553

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.29  E-value=1.2e-06  Score=74.00  Aligned_cols=74  Identities=16%  Similarity=0.096  Sum_probs=59.1

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC-c-CCCCceEEE
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-S-FREQYDVAV  151 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-~-~~~~fD~I~  151 (243)
                      +++..++|.+||.|..+..++..  +++|+|+|.++.+++.+++ .+.   .++++++++..++.... . ..+++|.|+
T Consensus        21 ~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~-L~~---~rv~lv~~~f~~l~~~L~~~g~~~vDgIL   94 (285)
T 1wg8_A           21 RPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKG-LHL---PGLTVVQGNFRHLKRHLAALGVERVDGIL   94 (285)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHH-TCC---TTEEEEESCGGGHHHHHHHTTCSCEEEEE
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHh-hcc---CCEEEEECCcchHHHHHHHcCCCCcCEEE
Confidence            34789999999999999898876  6799999999999999887 543   47999999998874310 0 014799999


Q ss_pred             Ec
Q 026122          152 AR  153 (243)
Q Consensus       152 ~~  153 (243)
                      ++
T Consensus        95 ~D   96 (285)
T 1wg8_A           95 AD   96 (285)
T ss_dssp             EE
T ss_pred             eC
Confidence            84

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=98.27  E-value=1.7e-06  Score=74.66  Aligned_cols=75  Identities=12%  Similarity=0.106  Sum_probs=58.1

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC---cCCCCceE
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV---SFREQYDV  149 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~---~~~~~fD~  149 (243)
                      +++..++|..||.|..+..++... +.++|+|+|.++.+++.++    ++...++++++++..++....   ...+++|.
T Consensus        56 ~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~----rL~~~Rv~lv~~nF~~l~~~L~~~g~~~~vDg  131 (347)
T 3tka_A           56 RPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK----TIDDPRFSIIHGPFSALGEYVAERDLIGKIDG  131 (347)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT----TCCCTTEEEEESCGGGHHHHHHHTTCTTCEEE
T ss_pred             CCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH----hhcCCcEEEEeCCHHHHHHHHHhcCCCCcccE
Confidence            458899999999999998888764 6789999999999998874    233356999999988864211   11136999


Q ss_pred             EEE
Q 026122          150 AVA  152 (243)
Q Consensus       150 I~~  152 (243)
                      |+.
T Consensus       132 ILf  134 (347)
T 3tka_A          132 ILL  134 (347)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            998

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=98.24  E-value=9.7e-07  Score=73.16  Aligned_cols=112  Identities=15%  Similarity=-0.065  Sum_probs=65.5

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHHHCCC----CEEEEEe--CCHHHHHHHHHHHHHcCCCCEEEEEc-cccccccCCcCC
Q 026122           72 SCNSNLKLVDVGTGAGLPGLVLAIACPD----WKVTLLE--SMNKRCVFLEHAVSLTQLLNVQIVRG-RAETLGKDVSFR  144 (243)
Q Consensus        72 ~~~~~~~VLDiGcG~G~~~~~la~~~~~----~~v~~vD--~s~~~~~~a~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~  144 (243)
                      .++++.+|+|+||++|..+...+...+-    +.|+|+|  +.+-..       ...|..-+++.++ |+.++..     
T Consensus        70 likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~-------~~~Gv~~i~~~~G~Df~~~~~-----  137 (269)
T 2px2_A           70 FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLM-------QSYGWNIVTMKSGVDVFYKPS-----  137 (269)
T ss_dssp             SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCC-------CSTTGGGEEEECSCCGGGSCC-----
T ss_pred             CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCcc-------cCCCceEEEeeccCCccCCCC-----
Confidence            4677999999999999999777764211    3445555  221000       0012111466667 9988532     


Q ss_pred             CCceEEEEcCcc-------c---HHHHHHHHccCcccCe-EEEEEeCCCcHHHHHHHHHHHH
Q 026122          145 EQYDVAVARAVA-------E---MRILAEYCLPLVRVGG-LFVAAKGHDPQEEVKNSERAVQ  195 (243)
Q Consensus       145 ~~fD~I~~~~~~-------~---~~~~l~~~~~~LkpgG-~l~~~~~~~~~~~~~~~~~~l~  195 (243)
                      .++|+|+|..-+       +   ....++-+.++|+||| .|++-.=....+++.++++.++
T Consensus       138 ~~~DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFqg~~~~~~~~l~~lk  199 (269)
T 2px2_A          138 EISDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILCPYMPKVIEKLESLQ  199 (269)
T ss_dssp             CCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHHHH
T ss_pred             CCCCEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECCCCchHHHHHHHHHH
Confidence            579999996311       1   1126777789999999 7775331122244444444443

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=98.24  E-value=4.5e-06  Score=70.42  Aligned_cols=123  Identities=16%  Similarity=0.016  Sum_probs=77.5

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEc-cccccccCCcCCCCceEEE
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRG-RAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~fD~I~  151 (243)
                      ++++.+|||+||++|..+...+...+..+|+|+|+-..--+. -...+.++.+.|.++.+ |+..+..     .++|+|+
T Consensus        92 l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~-P~~~~ql~w~lV~~~~~~Dv~~l~~-----~~~D~iv  165 (321)
T 3lkz_A           92 LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEE-PQLVQSYGWNIVTMKSGVDVFYRPS-----ECCDTLL  165 (321)
T ss_dssp             CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCC-CCCCCBTTGGGEEEECSCCTTSSCC-----CCCSEEE
T ss_pred             CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccC-cchhhhcCCcceEEEeccCHhhCCC-----CCCCEEE
Confidence            456889999999999999877776655689999987531100 00012334444888888 8877654     5699999


Q ss_pred             EcC---cc----c---HHHHHHHHccCcccC-eEEEEEeCCCcHHHHHHHHHHHH-HhCCee
Q 026122          152 ARA---VA----E---MRILAEYCLPLVRVG-GLFVAAKGHDPQEEVKNSERAVQ-LMGASL  201 (243)
Q Consensus       152 ~~~---~~----~---~~~~l~~~~~~Lkpg-G~l~~~~~~~~~~~~~~~~~~l~-~~g~~~  201 (243)
                      |.-   .+    +   -..+++.+.++|++| |.+++-.=....+++.+.++.++ .+|-..
T Consensus       166 cDigeSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~pY~~~v~e~l~~lq~~fgg~l  227 (321)
T 3lkz_A          166 CDIGESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCPYMPKVIEKMELLQRRYGGGL  227 (321)
T ss_dssp             ECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTSHHHHHHHHHHHHHHCCEE
T ss_pred             EECccCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCCCChHHHHHHHHHHHHhCCEe
Confidence            952   11    1   123677778899998 88776432222334434444443 556543

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=98.21  E-value=1.7e-06  Score=73.11  Aligned_cols=120  Identities=13%  Similarity=0.004  Sum_probs=70.0

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEE
Q 026122           72 SCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        72 ~~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      .++++.+|||+||++|..+..++...+...|.|+|+...+...... .+..+. ++.....++.-....   .+++|+|+
T Consensus        78 l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~-~~~~~~-~iv~~~~~~di~~l~---~~~~DlVl  152 (300)
T 3eld_A           78 YLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH-MQTLGW-NIVKFKDKSNVFTMP---TEPSDTLL  152 (300)
T ss_dssp             SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CCBTTG-GGEEEECSCCTTTSC---CCCCSEEE
T ss_pred             CCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc-ccccCC-ceEEeecCceeeecC---CCCcCEEe
Confidence            3456899999999999999888865555689999997532100000 000111 222223222212111   26899999


Q ss_pred             EcCccc----------HHHHHHHHccCcccC-eEEEEEeCCCcHHHHHHHHHHHHH
Q 026122          152 ARAVAE----------MRILAEYCLPLVRVG-GLFVAAKGHDPQEEVKNSERAVQL  196 (243)
Q Consensus       152 ~~~~~~----------~~~~l~~~~~~Lkpg-G~l~~~~~~~~~~~~~~~~~~l~~  196 (243)
                      |...++          ...+++-+.++|+|| |.|++-.=....++..+++..++.
T Consensus       153 sD~APnsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~~yG~~~~~ll~~lk~  208 (300)
T 3eld_A          153 CDIGESSSNPLVERDRTMKVLENFERWKHVNTENFCVKVLAPYHPDVIEKLERLQL  208 (300)
T ss_dssp             ECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESSTTSHHHHHHHHHHHH
T ss_pred             ecCcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeccccCccHHHHHHHHHH
Confidence            964221          134577888999999 998874322114455555555544

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=98.20  E-value=2.9e-05  Score=66.29  Aligned_cols=136  Identities=15%  Similarity=0.117  Sum_probs=85.5

Q ss_pred             CeEEEEcCCCChHHHHHH----HHCCCC--EEEEEeCCH---------HHHHHHHHHHHHcC---CCC--EEEEEccccc
Q 026122           77 LKLVDVGTGAGLPGLVLA----IACPDW--KVTLLESMN---------KRCVFLEHAVSLTQ---LLN--VQIVRGRAET  136 (243)
Q Consensus        77 ~~VLDiGcG~G~~~~~la----~~~~~~--~v~~vD~s~---------~~~~~a~~~~~~~~---~~~--v~~~~~d~~~  136 (243)
                      -+|||+|-|+|.+.+...    +..|..  +++.+|..+         ...+..+.......   ..+  +++..+|+.+
T Consensus        98 ~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa~~  177 (308)
T 3vyw_A           98 IRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDARK  177 (308)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCHHH
T ss_pred             cEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechHHH
Confidence            479999999999764332    234554  567777421         11122232333221   122  5788899877


Q ss_pred             cccCCcCCCCceEEEEcCccc-------HHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEEEec
Q 026122          137 LGKDVSFREQYDVAVARAVAE-------MRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVES  209 (243)
Q Consensus       137 ~~~~~~~~~~fD~I~~~~~~~-------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~  209 (243)
                      .-.... ..++|+|+..++++       -.++++.+.++++|||.+.-....      ..+++.|..+||.+.+.     
T Consensus       178 ~l~~l~-~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laTYtaa------g~VRR~L~~aGF~V~k~-----  245 (308)
T 3vyw_A          178 RIKEVE-NFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVSYSSS------LSVRKSLLTLGFKVGSS-----  245 (308)
T ss_dssp             HGGGCC-SCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEESCCC------HHHHHHHHHTTCEEEEE-----
T ss_pred             HHhhhc-ccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEEEeCc------HHHHHHHHHCCCEEEec-----
Confidence            543211 24799999986442       278999999999999997754432      34567788999988655     


Q ss_pred             CCCCCceEEEEEEee
Q 026122          210 QSPFGQRTAVVCLKS  224 (243)
Q Consensus       210 ~~~~~~r~~v~~~k~  224 (243)
                      ++..+.|++.+..+.
T Consensus       246 ~G~g~KReml~A~~~  260 (308)
T 3vyw_A          246 REIGRKRKGTVASLK  260 (308)
T ss_dssp             ECC---CEEEEEESS
T ss_pred             CCCCCCCceeEEecC
Confidence            466678888888654

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=98.19  E-value=2e-05  Score=69.51  Aligned_cols=102  Identities=10%  Similarity=0.019  Sum_probs=63.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHH-----------------CCCCEEEEEeCC-----------HHHHHHHHHHHHHcCC-CC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIA-----------------CPDWKVTLLESM-----------NKRCVFLEHAVSLTQL-LN  126 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~-----------------~~~~~v~~vD~s-----------~~~~~~a~~~~~~~~~-~~  126 (243)
                      ..+|+|+||++|.+++.+...                 .|..+|+.-|+-           +.+.+.+   .+..|- .+
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~---~~~~g~~~~  129 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNL---EKENGRKIG  129 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHH---HHHTCCCTT
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhh---hhhccCCCC
Confidence            468999999999998777654                 356889999976           3322221   122232 12


Q ss_pred             EEEEEccccccccCCcCCCCceEEEEcC-------cc------------------------------------cHHHHHH
Q 026122          127 VQIVRGRAETLGKDVSFREQYDVAVARA-------VA------------------------------------EMRILAE  163 (243)
Q Consensus       127 v~~~~~d~~~~~~~~~~~~~fD~I~~~~-------~~------------------------------------~~~~~l~  163 (243)
                      --++.+....+=...-..+++|+|+|+.       .+                                    ++..+++
T Consensus       130 ~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~  209 (384)
T 2efj_A          130 SCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLR  209 (384)
T ss_dssp             SEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            3455555444311111137899999963       10                                    1233477


Q ss_pred             HHccCcccCeEEEEEeC
Q 026122          164 YCLPLVRVGGLFVAAKG  180 (243)
Q Consensus       164 ~~~~~LkpgG~l~~~~~  180 (243)
                      ...+.|+|||++++...
T Consensus       210 ~Ra~eL~pGG~mvl~~~  226 (384)
T 2efj_A          210 IHSEELISRGRMLLTFI  226 (384)
T ss_dssp             HHHHHEEEEEEEEEEEE
T ss_pred             HHHHHhccCCeEEEEEe
Confidence            77899999999998873

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=98.16  E-value=2.9e-06  Score=71.58  Aligned_cols=125  Identities=9%  Similarity=-0.054  Sum_probs=94.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcccccccc-CCcCCCCceEEEEcC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK-DVSFREQYDVAVARA  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~~~fD~I~~~~  154 (243)
                      +..+||+-+|||.+++.+..  ++.+++.||.++..++..++|++.  ..++++++.|...... ......+||+|+..-
T Consensus        92 ~~~~LDlfaGSGaLgiEaLS--~~d~~vfvE~~~~a~~~L~~Nl~~--~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDP  167 (283)
T 2oo3_A           92 LNSTLSYYPGSPYFAINQLR--SQDRLYLCELHPTEYNFLLKLPHF--NKKVYVNHTDGVSKLNALLPPPEKRGLIFIDP  167 (283)
T ss_dssp             SSSSCCEEECHHHHHHHHSC--TTSEEEEECCSHHHHHHHTTSCCT--TSCEEEECSCHHHHHHHHCSCTTSCEEEEECC
T ss_pred             CCCceeEeCCcHHHHHHHcC--CCCeEEEEeCCHHHHHHHHHHhCc--CCcEEEEeCcHHHHHHHhcCCCCCccEEEECC
Confidence            66899999999999877664  457999999999999988888764  3469999999755321 000124699999974


Q ss_pred             ----cccHHHHHHHHcc--CcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEE
Q 026122          155 ----VAEMRILAEYCLP--LVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQL  204 (243)
Q Consensus       155 ----~~~~~~~l~~~~~--~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~  204 (243)
                          ...+..+++.+.+  .+.|+|.+++..+--...+...+.+.+++.|..+...
T Consensus       168 PYe~k~~~~~vl~~L~~~~~r~~~Gi~v~WYPi~~~~~~~~~~~~l~~~~~~~l~~  223 (283)
T 2oo3_A          168 SYERKEEYKEIPYAIKNAYSKFSTGLYCVWYPVVNKAWTEQFLRKMREISSKSVRI  223 (283)
T ss_dssp             CCCSTTHHHHHHHHHHHHHHHCTTSEEEEEEEESSHHHHHHHHHHHHHHCSSEEEE
T ss_pred             CCCCCcHHHHHHHHHHHhCccCCCeEEEEEEeccchHHHHHHHHHHHhcCCCeEEE
Confidence                2356677766655  4568999999998878888889999998888744433

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=98.14  E-value=2.8e-05  Score=71.60  Aligned_cols=106  Identities=11%  Similarity=0.035  Sum_probs=73.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHC-------------CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIAC-------------PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV  141 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~-------------~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~  141 (243)
                      ++.+|+|-+||||.+.+......             ....++|+|+++.+...|+-+.--+|.....+.++|....+...
T Consensus       217 ~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~I~~~dtL~~~~~~  296 (530)
T 3ufb_A          217 LGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRIDPENSLRFPLRE  296 (530)
T ss_dssp             TTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCEEECSCTTCSCGGG
T ss_pred             CCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCccccccccccccCchhh
Confidence            47799999999999865554321             12469999999999999999988888876677888876543211


Q ss_pred             -cCCCCceEEEEcCc-------------------c-cHHHHHHHHccCcc-------cCeEEEEEeC
Q 026122          142 -SFREQYDVAVARAV-------------------A-EMRILAEYCLPLVR-------VGGLFVAAKG  180 (243)
Q Consensus       142 -~~~~~fD~I~~~~~-------------------~-~~~~~l~~~~~~Lk-------pgG~l~~~~~  180 (243)
                       ....+||+|++|..                   . .-..+++.+.+.||       +||++.++.+
T Consensus       297 ~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP  363 (530)
T 3ufb_A          297 MGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVP  363 (530)
T ss_dssp             CCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEEE
T ss_pred             hcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEec
Confidence             01247999999730                   0 12234555555554       7999888764

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=98.05  E-value=7.3e-05  Score=63.10  Aligned_cols=126  Identities=11%  Similarity=0.080  Sum_probs=78.5

Q ss_pred             CCCeEEEEcC------CCChHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCc
Q 026122           75 SNLKLVDVGT------GAGLPGLVLAIACPD-WKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQY  147 (243)
Q Consensus        75 ~~~~VLDiGc------G~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~f  147 (243)
                      -+.+|||+|+      -+|.  ..+++..|. +.|+++|+.+-.           ...+ .++++|..+...    ..+|
T Consensus       109 ~gmrVLDLGA~s~kg~APGS--~VLr~~~p~g~~VVavDL~~~~-----------sda~-~~IqGD~~~~~~----~~k~  170 (344)
T 3r24_A          109 YNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDFV-----------SDAD-STLIGDCATVHT----ANKW  170 (344)
T ss_dssp             TTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCCB-----------CSSS-EEEESCGGGEEE----SSCE
T ss_pred             CCCEEEeCCCCCCCCCCCcH--HHHHHhCCCCcEEEEeeCcccc-----------cCCC-eEEEcccccccc----CCCC
Confidence            3889999997      5565  355666675 699999998731           1123 459999877543    2789


Q ss_pred             eEEEEcC---------cc------cHHHHHHHHccCcccCeEEEEEe--CCCcHHHHHHHHHHHHHhCCeeeEEEEEecC
Q 026122          148 DVAVARA---------VA------EMRILAEYCLPLVRVGGLFVAAK--GHDPQEEVKNSERAVQLMGASLLQLCSVESQ  210 (243)
Q Consensus       148 D~I~~~~---------~~------~~~~~l~~~~~~LkpgG~l~~~~--~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~  210 (243)
                      |+|+|..         ..      =.+.+++-+.+.|+|||.|++-.  |.+ .+.+.+    +++ -|..+.... . .
T Consensus       171 DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGsg-~~~L~~----lrk-~F~~VK~fK-~-A  242 (344)
T 3r24_A          171 DLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSW-NADLYK----LMG-HFSWWTAFV-T-N  242 (344)
T ss_dssp             EEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSC-CHHHHH----HHT-TEEEEEEEE-E-G
T ss_pred             CEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCCC-HHHHHH----HHh-hCCeEEEEC-C-C
Confidence            9999952         11      14667777889999999988644  555 233333    222 565555543 2 2


Q ss_pred             CCCCceEEEEEEeeCC
Q 026122          211 SPFGQRTAVVCLKSRR  226 (243)
Q Consensus       211 ~~~~~r~~v~~~k~~~  226 (243)
                      .....+.+.++.+..+
T Consensus       243 SRa~SsEvYLVG~gfK  258 (344)
T 3r24_A          243 VNASSSEAFLIGANYL  258 (344)
T ss_dssp             GGTTSSCEEEEEEEEC
T ss_pred             CCCCCeeEEEEeeecc
Confidence            2233455555554433

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=98.01  E-value=1.3e-05  Score=68.24  Aligned_cols=47  Identities=11%  Similarity=-0.004  Sum_probs=40.9

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT  122 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~  122 (243)
                      .++..|||++||+|..++.++..  +.+++|+|+++.+++.++++++..
T Consensus       234 ~~~~~vlD~f~GsGt~~~~a~~~--g~~~~g~e~~~~~~~~a~~r~~~~  280 (297)
T 2zig_A          234 FVGDVVLDPFAGTGTTLIAAARW--GRRALGVELVPRYAQLAKERFARE  280 (297)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHHHHh
Confidence            35889999999999998776654  579999999999999999998775

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=98.01  E-value=1.7e-05  Score=69.76  Aligned_cols=104  Identities=13%  Similarity=0.094  Sum_probs=60.9

Q ss_pred             CCeEEEEcCCCChHHHHHHH--------HC-------CCCEEEEEeCCHHHHHHHHHHHHHc-----------CC-CCEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAI--------AC-------PDWKVTLLESMNKRCVFLEHAVSLT-----------QL-LNVQ  128 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~--------~~-------~~~~v~~vD~s~~~~~~a~~~~~~~-----------~~-~~v~  128 (243)
                      ..+|+|+|||+|.+++.+..        .+       |..+|+.-|+-...-...=+.+...           +. .+-.
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~  132 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY  132 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence            57899999999999877621        21       5678888886554332221111110           00 0111


Q ss_pred             EEEccccccccCCcCCCCceEEEEcC-----------cc-------------------------------cHHHHHHHHc
Q 026122          129 IVRGRAETLGKDVSFREQYDVAVARA-----------VA-------------------------------EMRILAEYCL  166 (243)
Q Consensus       129 ~~~~d~~~~~~~~~~~~~fD~I~~~~-----------~~-------------------------------~~~~~l~~~~  166 (243)
                      ++.+....+-...-..+++|+|+|+.           +.                               ++..+++...
T Consensus       133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra  212 (374)
T 3b5i_A          133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA  212 (374)
T ss_dssp             EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22222222111101137899999963           10                               4566788899


Q ss_pred             cCcccCeEEEEEe
Q 026122          167 PLVRVGGLFVAAK  179 (243)
Q Consensus       167 ~~LkpgG~l~~~~  179 (243)
                      +.|+|||++++..
T Consensus       213 ~eL~pGG~mvl~~  225 (374)
T 3b5i_A          213 AEVKRGGAMFLVC  225 (374)
T ss_dssp             HHEEEEEEEEEEE
T ss_pred             HHhCCCCEEEEEE
Confidence            9999999999876

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=97.81  E-value=0.00026  Score=61.58  Aligned_cols=140  Identities=11%  Similarity=0.141  Sum_probs=85.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCC-CCceEEEEc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFR-EQYDVAVAR  153 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~-~~fD~I~~~  153 (243)
                      ..+|+|+.||.|.+++.+....- ...|.++|+++.+++..+.|..     +..++++|+.++.... .. ..+|+|+..
T Consensus         2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~-----~~~~~~~Di~~~~~~~-~~~~~~D~l~~g   75 (343)
T 1g55_A            2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP-----HTQLLAKTIEGITLEE-FDRLSFDMILMS   75 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT-----TSCEECSCGGGCCHHH-HHHHCCSEEEEC
T ss_pred             CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc-----ccccccCCHHHccHhH-cCcCCcCEEEEc
Confidence            35899999999999888876621 1369999999998888877753     3457889998875321 11 168999985


Q ss_pred             Cc-------------cc-----HHHHHHHHccCcc--cCeEEEEEe--CCCcHHHHHHHHHHHHHhCCeeeEEEEEe---
Q 026122          154 AV-------------AE-----MRILAEYCLPLVR--VGGLFVAAK--GHDPQEEVKNSERAVQLMGASLLQLCSVE---  208 (243)
Q Consensus       154 ~~-------------~~-----~~~~l~~~~~~Lk--pgG~l~~~~--~~~~~~~~~~~~~~l~~~g~~~~~~~~~~---  208 (243)
                      ..             .+     +..+++ +...++  |. .++++.  +-........+.+.++..|+.+... -+.   
T Consensus        76 pPCq~fS~ag~~~g~~d~r~~l~~~~~~-~i~~~~~~P~-~~~~ENV~~l~~~~~~~~i~~~l~~~GY~v~~~-vl~a~~  152 (343)
T 1g55_A           76 PPCQPFTRIGRQGDMTDSRTNSFLHILD-ILPRLQKLPK-YILLENVKGFEVSSTRDLLIQTIENCGFQYQEF-LLSPTS  152 (343)
T ss_dssp             CC------------------CHHHHHHH-HGGGCSSCCS-EEEEEEETTGGGSHHHHHHHHHHHHTTEEEEEE-EECGGG
T ss_pred             CCCcchhhcCCcCCccCccchHHHHHHH-HHHHhcCCCC-EEEEeCCccccCHHHHHHHHHHHHHCCCeeEEE-EEEHHH
Confidence            21             11     123333 334555  65 334432  2123355677788889999976542 122   


Q ss_pred             c-CCCCCceEEEEEEee
Q 026122          209 S-QSPFGQRTAVVCLKS  224 (243)
Q Consensus       209 ~-~~~~~~r~~v~~~k~  224 (243)
                      + ......|.+++..+.
T Consensus       153 ~GvPQ~R~R~~iv~~~~  169 (343)
T 1g55_A          153 LGIPNSRLRYFLIAKLQ  169 (343)
T ss_dssp             GTCSCCCCEEEEEEEES
T ss_pred             CCCCCcccEEEEEEEeC
Confidence            2 122235666666543

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=97.78  E-value=2.4e-05  Score=68.48  Aligned_cols=104  Identities=13%  Similarity=0.182  Sum_probs=66.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHH----------------CCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCEEEEEccccccc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIA----------------CPDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLG  138 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~----------------~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~  138 (243)
                      ..+|+|+||++|.+++.+...                .|..+|+..|.-......+-+.+....- .+..++.+....+=
T Consensus        52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy  131 (359)
T 1m6e_X           52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY  131 (359)
T ss_dssp             EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred             ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhh
Confidence            468999999999887554432                3568999999877655555444332110 12244444433321


Q ss_pred             cCCcCCCCceEEEEcC-----------c--------------------------ccHHHHHHHHccCcccCeEEEEEe
Q 026122          139 KDVSFREQYDVAVARA-----------V--------------------------AEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       139 ~~~~~~~~fD~I~~~~-----------~--------------------------~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      ...-..+++|+|+|+.           +                          .++..+++...+.|+|||++++..
T Consensus       132 ~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~  209 (359)
T 1m6e_X          132 GRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI  209 (359)
T ss_dssp             SCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred             hccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence            1111137899999953           0                          035667888999999999999876

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=97.71  E-value=0.0013  Score=57.88  Aligned_cols=117  Identities=12%  Similarity=-0.045  Sum_probs=74.3

Q ss_pred             CeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCc-----CCCCceEEE
Q 026122           77 LKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-----FREQYDVAV  151 (243)
Q Consensus        77 ~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~-----~~~~fD~I~  151 (243)
                      .+|+|+.||.|.+++.+.... -..|.++|+++.+++..+.|.     .+..++++|+.++.....     ....+|+|+
T Consensus         3 ~~vidLFsG~GGlslG~~~aG-~~~v~avE~d~~a~~t~~~N~-----~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~   76 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAG-FDVKMAVEIDQHAINTHAINF-----PRSLHVQEDVSLLNAEIIKGFFKNDMPIDGII   76 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHT-CEEEEEECSCHHHHHHHHHHC-----TTSEEECCCGGGCCHHHHHHHHCSCCCCCEEE
T ss_pred             CeEEEEccCcCHHHHHHHHCC-CcEEEEEeCCHHHHHHHHHhC-----CCCceEecChhhcCHHHHHhhcccCCCeeEEE
Confidence            589999999999988877662 234679999999887777663     356788999988743210     125799999


Q ss_pred             EcCc------------cc-HHHHHHH---HccCcccCeEEEEEeCC-----CcHHHHHHHHHHHHHhCCee
Q 026122          152 ARAV------------AE-MRILAEY---CLPLVRVGGLFVAAKGH-----DPQEEVKNSERAVQLMGASL  201 (243)
Q Consensus       152 ~~~~------------~~-~~~~l~~---~~~~LkpgG~l~~~~~~-----~~~~~~~~~~~~l~~~g~~~  201 (243)
                      ....            .+ ...++..   +...++|. .++++.-.     .....+..+. .++..|+.+
T Consensus        77 ggpPCQ~fS~ag~~~~~d~r~~L~~~~~~~v~~~~P~-~~v~ENV~gl~s~~~~~~~~~i~-~l~~~GY~v  145 (376)
T 3g7u_A           77 GGPPCQGFSSIGKGNPDDSRNQLYMHFYRLVSELQPL-FFLAENVPGIMQEKYSGIRNKAF-NLVSGDYDI  145 (376)
T ss_dssp             ECCCCCTTC-------CHHHHHHHHHHHHHHHHHCCS-EEEEEECTTTTCGGGHHHHHHHH-HHHHTTEEE
T ss_pred             ecCCCCCcccccCCCCCCchHHHHHHHHHHHHHhCCC-EEEEecchHhhccCcHHHHHHHH-HHHcCCCcc
Confidence            8421            11 1122222   23345674 33443311     1233466677 888999987

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=97.57  E-value=0.00015  Score=63.26  Aligned_cols=60  Identities=20%  Similarity=0.256  Sum_probs=50.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLG  138 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~  138 (243)
                      +..|||||.|.|.++..|+......+|++||+++..+...++..   ...+++++++|+.++.
T Consensus        59 ~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~---~~~~l~ii~~D~l~~~  118 (353)
T 1i4w_A           59 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF---EGSPLQILKRDPYDWS  118 (353)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT---TTSSCEEECSCTTCHH
T ss_pred             CCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc---cCCCEEEEECCccchh
Confidence            57999999999999999987644468999999999998887765   2357999999997653

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=97.56  E-value=0.0021  Score=55.48  Aligned_cols=116  Identities=13%  Similarity=0.062  Sum_probs=74.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~-  154 (243)
                      +.+++|+.||+|.+++.+... +-..|.++|+++.+++..+.|....    .   ++|+.++.... . ..+|+|+... 
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~a-G~~~v~~~e~d~~a~~t~~~N~~~~----~---~~Di~~~~~~~-~-~~~D~l~~gpP   80 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESC-GAECVYSNEWDKYAQEVYEMNFGEK----P---EGDITQVNEKT-I-PDHDILCAGFP   80 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHT-TCEEEEEECCCHHHHHHHHHHHSCC----C---BSCGGGSCGGG-S-CCCSEEEEECC
T ss_pred             CCcEEEECCCcCHHHHHHHHC-CCeEEEEEeCCHHHHHHHHHHcCCC----C---cCCHHHcCHhh-C-CCCCEEEECCC
Confidence            568999999999998777654 3346889999999888888775421    1   68888875432 1 3699999841 


Q ss_pred             ------------ccc-----HHHHHHHHccCcccCeEEEEEeCC-----CcHHHHHHHHHHHHHhCCeeeE
Q 026122          155 ------------VAE-----MRILAEYCLPLVRVGGLFVAAKGH-----DPQEEVKNSERAVQLMGASLLQ  203 (243)
Q Consensus       155 ------------~~~-----~~~~l~~~~~~LkpgG~l~~~~~~-----~~~~~~~~~~~~l~~~g~~~~~  203 (243)
                                  ..+     +..+++. .+.++|. .++++.-.     .....+..+.+.++..|+.+..
T Consensus        81 CQ~fS~ag~~~g~~d~r~~L~~~~~r~-i~~~~P~-~~~~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~  149 (327)
T 2c7p_A           81 CQAFSISGKQKGFEDSRGTLFFDIARI-VREKKPK-VVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHA  149 (327)
T ss_dssp             CTTTCTTSCCCGGGSTTSCHHHHHHHH-HHHHCCS-EEEEEEEGGGGTGGGGHHHHHHHHHHHHTTBCCEE
T ss_pred             CCCcchhcccCCCcchhhHHHHHHHHH-HHhccCc-EEEEeCcHHHHhccccHHHHHHHHHHHhCCCEEEE
Confidence                        111     2333332 2345775 33443311     1234567788889999987644

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=97.53  E-value=0.00013  Score=60.80  Aligned_cols=49  Identities=12%  Similarity=0.068  Sum_probs=39.9

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCC
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL  124 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~  124 (243)
                      +++..|||..||+|..++...+.  +.+++|+|+++.+++.++++++.+++
T Consensus       211 ~~~~~vlD~f~GsGtt~~~a~~~--gr~~ig~e~~~~~~~~~~~r~~~~~~  259 (260)
T 1g60_A          211 NPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQANFVLNQLEI  259 (260)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC---
T ss_pred             CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHHHhccC
Confidence            35889999999999998666544  57999999999999999999886553

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=97.48  E-value=0.00038  Score=61.92  Aligned_cols=62  Identities=18%  Similarity=0.155  Sum_probs=50.7

Q ss_pred             CCCCCeEEEEcCCCChHHHHHH-HHCCC-CEEEEEeCCHHHHHHHHHHHHH---cCC-CCEEEEEccc
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLA-IACPD-WKVTLLESMNKRCVFLEHAVSL---TQL-LNVQIVRGRA  134 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la-~~~~~-~~v~~vD~s~~~~~~a~~~~~~---~~~-~~v~~~~~d~  134 (243)
                      ++++..|+||||+.|..++.++ +..+. ++|+++|+++...+.++++.+.   ++. .++++++.-+
T Consensus       224 l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al  291 (409)
T 2py6_A          224 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGA  291 (409)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEE
T ss_pred             cCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEE
Confidence            4668999999999999998887 55554 7999999999999999999987   345 6677775443

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=97.22  E-value=0.0009  Score=63.31  Aligned_cols=124  Identities=19%  Similarity=0.169  Sum_probs=80.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC-------C-----CCEEEEEeCCHHHHHHHHH--------------HHHHc-----C-
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC-------P-----DWKVTLLESMNKRCVFLEH--------------AVSLT-----Q-  123 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~-------~-----~~~v~~vD~s~~~~~~a~~--------------~~~~~-----~-  123 (243)
                      .-+|+|+|.|+|.+.+.+.+.+       |     ..+++.+|..+-..+.+++              ..+..     | 
T Consensus        59 ~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~  138 (689)
T 3pvc_A           59 SCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAGC  138 (689)
T ss_dssp             EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSEE
T ss_pred             ceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCCc
Confidence            4589999999999877665542       1     1689999984422222222              12211     1 


Q ss_pred             ----CC----CEEEEEccccccccCCc--CCCCceEEEEcCccc-------HHHHHHHHccCcccCeEEEEEeCCCcHHH
Q 026122          124 ----LL----NVQIVRGRAETLGKDVS--FREQYDVAVARAVAE-------MRILAEYCLPLVRVGGLFVAAKGHDPQEE  186 (243)
Q Consensus       124 ----~~----~v~~~~~d~~~~~~~~~--~~~~fD~I~~~~~~~-------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~  186 (243)
                          +.    .++++.+|+.+......  ....+|+++..+++.       -.+++..+.++++|||.+.-....     
T Consensus       139 ~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~~~-----  213 (689)
T 3pvc_A          139 HRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFSTFTAA-----  213 (689)
T ss_dssp             EEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEESCCC-----
T ss_pred             eEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEeccCc-----
Confidence                11    36788899877543210  125799999976542       278889999999999986653332     


Q ss_pred             HHHHHHHHHHhCCeeeEEE
Q 026122          187 VKNSERAVQLMGASLLQLC  205 (243)
Q Consensus       187 ~~~~~~~l~~~g~~~~~~~  205 (243)
                       ..+.+.+.+.||.+....
T Consensus       214 -~~vr~~l~~aGf~~~~~~  231 (689)
T 3pvc_A          214 -GFVRRGLQQAGFNVTKVK  231 (689)
T ss_dssp             -HHHHHHHHHTTCEEEEEE
T ss_pred             -HHHHHHHHhCCeEEEecc
Confidence             345667779999877654

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=97.13  E-value=0.0083  Score=51.29  Aligned_cols=134  Identities=13%  Similarity=0.167  Sum_probs=82.2

Q ss_pred             eEEEEcCCCChHHHHHHHHCCCC-EEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC--
Q 026122           78 KLVDVGTGAGLPGLVLAIACPDW-KVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA--  154 (243)
Q Consensus        78 ~VLDiGcG~G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~--  154 (243)
                      +|||+-||.|.+++.+.+.  +. -|.++|+++.+++..+.|.   +   -.++.+|+.++.... . ...|+++...  
T Consensus         2 kvidLFsG~GG~~~G~~~a--G~~~v~a~e~d~~a~~ty~~N~---~---~~~~~~DI~~i~~~~-~-~~~D~l~ggpPC   71 (331)
T 3ubt_Y            2 NLISLFSGAGGLDLGFQKA--GFRIICANEYDKSIWKTYESNH---S---AKLIKGDISKISSDE-F-PKCDGIIGGPPS   71 (331)
T ss_dssp             EEEEESCTTCHHHHHHHHT--TCEEEEEEECCTTTHHHHHHHC---C---SEEEESCGGGCCGGG-S-CCCSEEECCCCG
T ss_pred             eEEEeCcCccHHHHHHHHC--CCEEEEEEeCCHHHHHHHHHHC---C---CCcccCChhhCCHhh-C-CcccEEEecCCC
Confidence            7999999999887666544  44 4679999998777766652   1   367889999886542 1 4699998731  


Q ss_pred             -----------ccc-----HHHHHHHHccCcccCeEEEEEeC-----CCcHHHHHHHHHHHHHhCCeeeEEEEEecC--C
Q 026122          155 -----------VAE-----MRILAEYCLPLVRVGGLFVAAKG-----HDPQEEVKNSERAVQLMGASLLQLCSVESQ--S  211 (243)
Q Consensus       155 -----------~~~-----~~~~l~~~~~~LkpgG~l~~~~~-----~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~--~  211 (243)
                                 ..+     +..+++ +.+.++|. .++++.-     ......+..+.+.++..|+.+... -+...  +
T Consensus        72 Q~fS~ag~~~g~~d~R~~L~~~~~r-~i~~~~Pk-~~~~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~-vlna~~yG  148 (331)
T 3ubt_Y           72 QSWSEGGSLRGIDDPRGKLFYEYIR-ILKQKKPI-FFLAENVKGMMAQRHNKAVQEFIQEFDNAGYDVHII-LLNANDYG  148 (331)
T ss_dssp             GGTEETTEECCTTCGGGHHHHHHHH-HHHHHCCS-EEEEEECCGGGGCTTSHHHHHHHHHHHHHTEEEEEE-EEEGGGTT
T ss_pred             CCcCCCCCccCCCCchhHHHHHHHH-HHhccCCe-EEEeeeecccccccccchhhhhhhhhccCCcEEEEE-ecccccCC
Confidence                       111     222222 33345775 3344332     133456788888899999976432 23321  2


Q ss_pred             CC--CceEEEEEEee
Q 026122          212 PF--GQRTAVVCLKS  224 (243)
Q Consensus       212 ~~--~~r~~v~~~k~  224 (243)
                      .+  ..|.+++..+.
T Consensus       149 vPQ~R~Rvfivg~r~  163 (331)
T 3ubt_Y          149 VAQDRKRVFYIGFRK  163 (331)
T ss_dssp             CSBCCEEEEEEEEEG
T ss_pred             CCcccceEEEEEEcC
Confidence            22  25555555443

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=97.08  E-value=0.0025  Score=53.05  Aligned_cols=128  Identities=12%  Similarity=0.030  Sum_probs=81.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHH-------CCCCEEEEEe-----CCH-------------------HHHHHHHHHH-----
Q 026122           76 NLKLVDVGTGAGLPGLVLAIA-------CPDWKVTLLE-----SMN-------------------KRCVFLEHAV-----  119 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~-------~~~~~v~~vD-----~s~-------------------~~~~~a~~~~-----  119 (243)
                      ++.|+|+||-.|.-++.++..       .+..+|++.|     ...                   ...+..++.+     
T Consensus        70 pG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~  149 (257)
T 3tos_A           70 PGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHEC  149 (257)
T ss_dssp             CSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHT
T ss_pred             CCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhh
Confidence            569999999999988776643       2457999999     321                   0111122222     


Q ss_pred             -HHcCC--CCEEEEEccccccccCC---cCCCCceEEEEcCcc--cHHHHHHHHccCcccCeEEEEEeCC--CcHHHHHH
Q 026122          120 -SLTQL--LNVQIVRGRAETLGKDV---SFREQYDVAVARAVA--EMRILAEYCLPLVRVGGLFVAAKGH--DPQEEVKN  189 (243)
Q Consensus       120 -~~~~~--~~v~~~~~d~~~~~~~~---~~~~~fD~I~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~  189 (243)
                       ++.+.  .+++++.+++.+.....   ....++|+|+..+..  .....++.+.+.|+|||.+++-.-.  ....+-+.
T Consensus       150 ~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~Y~~t~~~le~~~p~l~~GGvIv~DD~~~~~w~G~~~A  229 (257)
T 3tos_A          150 SDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDLYEPTKAVLEAIRPYLTKGSIVAFDELDNPKWPGENIA  229 (257)
T ss_dssp             TSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEESSTTCTTCTHHHHH
T ss_pred             hhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcccchHHHHHHHHHHHhCCCcEEEEcCCCCCCChHHHHH
Confidence             23454  46999999998753210   012469999997633  4566789999999999998774411  12233344


Q ss_pred             HHHHHHHhCCeeeE
Q 026122          190 SERAVQLMGASLLQ  203 (243)
Q Consensus       190 ~~~~l~~~g~~~~~  203 (243)
                      +.+.+.+.|.++..
T Consensus       230 ~~ef~~~~~~~i~~  243 (257)
T 3tos_A          230 MRKVLGLDHAPLRL  243 (257)
T ss_dssp             HHHHTCTTSSCCEE
T ss_pred             HHHHHhhCCCeEEE
Confidence            55555566665543

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=97.06  E-value=0.00023  Score=62.85  Aligned_cols=98  Identities=15%  Similarity=0.048  Sum_probs=63.1

Q ss_pred             CCCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcccccc-----ccCCcCCCC
Q 026122           73 CNSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETL-----GKDVSFREQ  146 (243)
Q Consensus        73 ~~~~~~VLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~~~~  146 (243)
                      ++++.+||-+|||. |..++.+|+..+..+|+++|.+++.++.++    ++|.   .++..+-.+.     ... .....
T Consensus       183 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~----~lGa---~~i~~~~~~~~~~~~~~~-~~g~g  254 (398)
T 2dph_A          183 VKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLS----DAGF---ETIDLRNSAPLRDQIDQI-LGKPE  254 (398)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHH----TTTC---EEEETTSSSCHHHHHHHH-HSSSC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH----HcCC---cEEcCCCcchHHHHHHHH-hCCCC
Confidence            35589999999976 777788887764349999999998766654    4554   2332221111     100 00136


Q ss_pred             ceEEEEcCccc------------HHHHHHHHccCcccCeEEEEE
Q 026122          147 YDVAVARAVAE------------MRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       147 fD~I~~~~~~~------------~~~~l~~~~~~LkpgG~l~~~  178 (243)
                      +|+|+-..-..            ....++.+.+.|++||+++++
T Consensus       255 ~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~  298 (398)
T 2dph_A          255 VDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIP  298 (398)
T ss_dssp             EEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECC
T ss_pred             CCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEe
Confidence            99999754221            124577788899999997754

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=97.04  E-value=0.00069  Score=59.12  Aligned_cols=99  Identities=12%  Similarity=0.150  Sum_probs=63.7

Q ss_pred             CCCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccC--CcCCCCceE
Q 026122           73 CNSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD--VSFREQYDV  149 (243)
Q Consensus        73 ~~~~~~VLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~--~~~~~~fD~  149 (243)
                      ++++.+||-+|||. |..++.+|+.....+|+++|.+++..+.++    ++|..  .++..+-.++...  ....+.+|+
T Consensus       188 ~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~----~lGa~--~vi~~~~~~~~~~~~~~~~gg~D~  261 (371)
T 1f8f_A          188 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAK----QLGAT--HVINSKTQDPVAAIKEITDGGVNF  261 (371)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHH----HHTCS--EEEETTTSCHHHHHHHHTTSCEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH----HcCCC--EEecCCccCHHHHHHHhcCCCCcE
Confidence            45689999999875 777778887764347999999998777664    34543  2232211111000  000136999


Q ss_pred             EEEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122          150 AVARAVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       150 I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      |+-..-.  ...++.+.+.|+++|+++..-
T Consensus       262 vid~~g~--~~~~~~~~~~l~~~G~iv~~G  289 (371)
T 1f8f_A          262 ALESTGS--PEILKQGVDALGILGKIAVVG  289 (371)
T ss_dssp             EEECSCC--HHHHHHHHHTEEEEEEEEECC
T ss_pred             EEECCCC--HHHHHHHHHHHhcCCEEEEeC
Confidence            9975432  345677888999999987653

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=97.03  E-value=0.029  Score=48.38  Aligned_cols=140  Identities=9%  Similarity=-0.009  Sum_probs=82.9

Q ss_pred             CeEEEEcCCCChHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122           77 LKLVDVGTGAGLPGLVLAIACPD-WKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-  154 (243)
Q Consensus        77 ~~VLDiGcG~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~-  154 (243)
                      .+++|+.||.|.+++.+....-+ ..|.++|+++.+++..+.|..     +..++++|+.++.........+|+++... 
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~-----~~~~~~~DI~~~~~~~~~~~~~D~l~ggpP   78 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFP-----ETNLLNRNIQQLTPQVIKKWNVDTILMSPP   78 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT-----TSCEECCCGGGCCHHHHHHTTCCEEEECCC
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCC-----CCceeccccccCCHHHhccCCCCEEEecCC
Confidence            48999999999998777765322 357899999987777666532     34577889888754211012689999731 


Q ss_pred             ------------cc-----cHHHHHHHHccCcc-cCeEEEEEeCCC--cHHHHHHHHHHHHHhCCeeeEEEEEecC--CC
Q 026122          155 ------------VA-----EMRILAEYCLPLVR-VGGLFVAAKGHD--PQEEVKNSERAVQLMGASLLQLCSVESQ--SP  212 (243)
Q Consensus       155 ------------~~-----~~~~~l~~~~~~Lk-pgG~l~~~~~~~--~~~~~~~~~~~l~~~g~~~~~~~~~~~~--~~  212 (243)
                                  ..     -+..+++.+ +.++ |. .++++.-..  .......+.+.++..|+.+... -+...  +.
T Consensus        79 CQ~fS~ag~~~~~~d~r~~L~~~~~r~i-~~~~~P~-~~vlENV~gl~~~~~~~~i~~~l~~~GY~v~~~-vl~a~~~Gv  155 (333)
T 4h0n_A           79 CQPFTRNGKYLDDNDPRTNSFLYLIGIL-DQLDNVD-YILMENVKGFENSTVRNLFIDKLKECNFIYQEF-LLCPSTVGV  155 (333)
T ss_dssp             CCCSEETTEECCTTCTTSCCHHHHHHHG-GGCTTCC-EEEEEECTTGGGSHHHHHHHHHHHHTTEEEEEE-EECTTTTTC
T ss_pred             CcchhhhhhccCCcCcccccHHHHHHHH-HHhcCCC-EEEEecchhhhhhhHHHHHHHHHHhCCCeEEEE-EecHHHcCC
Confidence                        11     134444433 3444 74 334433222  2334667788899999977543 22211  11


Q ss_pred             C--CceEEEEEEee
Q 026122          213 F--GQRTAVVCLKS  224 (243)
Q Consensus       213 ~--~~r~~v~~~k~  224 (243)
                      +  ..|.+++..+.
T Consensus       156 PQ~R~R~fiva~r~  169 (333)
T 4h0n_A          156 PNSRLRYYCTARRN  169 (333)
T ss_dssp             SCCCCEEEEEEEET
T ss_pred             CccceEEEEEEEeC
Confidence            2  35666555544

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=97.02  E-value=0.0082  Score=51.69  Aligned_cols=120  Identities=3%  Similarity=-0.133  Sum_probs=73.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCC-CCEE-EEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACP-DWKV-TLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~-~~~v-~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      ..+++|+.||.|.+++.+....- ...| .++|+++.+++..+.|...     . ++++|+.++.........+|+++..
T Consensus        10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~-----~-~~~~DI~~~~~~~i~~~~~Dil~gg   83 (327)
T 3qv2_A           10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKE-----E-VQVKNLDSISIKQIESLNCNTWFMS   83 (327)
T ss_dssp             CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCC-----C-CBCCCTTTCCHHHHHHTCCCEEEEC
T ss_pred             CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCC-----C-cccCChhhcCHHHhccCCCCEEEec
Confidence            45899999999998877665421 1345 6999999988877776531     1 5678888765421101268999963


Q ss_pred             ----Cc--c----------cHHHHHHHHcc----Cc--ccCeEEEEEeCC---CcHHHHHHHHHHHHHhCCeeeE
Q 026122          154 ----AV--A----------EMRILAEYCLP----LV--RVGGLFVAAKGH---DPQEEVKNSERAVQLMGASLLQ  203 (243)
Q Consensus       154 ----~~--~----------~~~~~l~~~~~----~L--kpgG~l~~~~~~---~~~~~~~~~~~~l~~~g~~~~~  203 (243)
                          ..  +          ....++....+    .+  +|  .++++++.   ........+.+.++..|+.+..
T Consensus        84 pPCQ~fs~S~ag~~~~~~d~r~~L~~~~~r~~i~~~~~~P--~~~~lENV~gl~~~~~~~~i~~~l~~~GY~v~~  156 (327)
T 3qv2_A           84 PPCQPYNNSIMSKHKDINDPRAKSVLHLYRDILPYLINKP--KHIFIENVPLFKESLVFKEIYNILIKNQYYIKD  156 (327)
T ss_dssp             CCCTTCSHHHHTTTCTTTCGGGHHHHHHHHTTGGGCSSCC--SEEEEEECGGGGGSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCccCcccccCCCCCCCccccchhHHHHHHHHHHHhccCC--CEEEEEchhhhcChHHHHHHHHHHHhCCCEEEE
Confidence                12  1          12233333333    34  45  34444432   2234567778888999997654

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=96.99  E-value=0.015  Score=54.73  Aligned_cols=137  Identities=17%  Similarity=0.148  Sum_probs=85.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC-------C-----CCEEEEEeC---CHHHHHHHH-----------HHHHHcC-----C
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC-------P-----DWKVTLLES---MNKRCVFLE-----------HAVSLTQ-----L  124 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~-------~-----~~~v~~vD~---s~~~~~~a~-----------~~~~~~~-----~  124 (243)
                      .-+|+|+|-|+|.+.+...+..       |     ..+++++|.   +.+-+..+-           +..+...     +
T Consensus        67 ~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (676)
T 3ps9_A           67 LFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGC  146 (676)
T ss_dssp             EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSEE
T ss_pred             ceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCCc
Confidence            3489999999999876665432       1     257999998   766555221           2222211     0


Q ss_pred             ---------CCEEEEEccccccccCC--cCCCCceEEEEcCccc-------HHHHHHHHccCcccCeEEEEEeCCCcHHH
Q 026122          125 ---------LNVQIVRGRAETLGKDV--SFREQYDVAVARAVAE-------MRILAEYCLPLVRVGGLFVAAKGHDPQEE  186 (243)
Q Consensus       125 ---------~~v~~~~~d~~~~~~~~--~~~~~fD~I~~~~~~~-------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~  186 (243)
                               -.+++..+|+.+.....  .....||+|+..+++.       -.++++.+.++++|||.+.-....     
T Consensus       147 ~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~~~-----  221 (676)
T 3ps9_A          147 HRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFTSA-----  221 (676)
T ss_dssp             EEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEESCCC-----
T ss_pred             eEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEeccCc-----
Confidence                     12567778877643321  0125799999976431       377889999999999996654332     


Q ss_pred             HHHHHHHHHHhCCeeeEEEEEecCCCCCceEEEEEEe
Q 026122          187 VKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLK  223 (243)
Q Consensus       187 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~v~~~k  223 (243)
                       ..+.+.+.+.||.+....     .....|.+....+
T Consensus       222 -~~vr~~L~~aGf~v~~~~-----~~g~krem~~~~~  252 (676)
T 3ps9_A          222 -GFVRRGLQDAGFTMQKRK-----GFGRKREMLCGVM  252 (676)
T ss_dssp             -HHHHHHHHHHTCEEEEEE-----CSTTCCEEEEEEC
T ss_pred             -HHHHHHHHhCCeEEEecc-----ccccchhhhheec
Confidence             345667779999876543     2234555544443

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=96.97  E-value=0.00092  Score=57.68  Aligned_cols=97  Identities=14%  Similarity=0.106  Sum_probs=64.0

Q ss_pred             CCCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcc--ccc-cccCCcCCCCce
Q 026122           73 CNSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGR--AET-LGKDVSFREQYD  148 (243)
Q Consensus        73 ~~~~~~VLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d--~~~-~~~~~~~~~~fD  148 (243)
                      ++++.+||-+|+|. |..++.+|+...+.+|+++|.+++..+.++    ++|...  ++..+  ..+ +... .....+|
T Consensus       169 ~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~----~lGa~~--~i~~~~~~~~~v~~~-t~g~g~d  241 (345)
T 3jv7_A          169 LGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAR----EVGADA--AVKSGAGAADAIREL-TGGQGAT  241 (345)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHH----HTTCSE--EEECSTTHHHHHHHH-HGGGCEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH----HcCCCE--EEcCCCcHHHHHHHH-hCCCCCe
Confidence            45689999999874 667778887766789999999998777654    456542  22211  111 1000 0013799


Q ss_pred             EEEEcCcccHHHHHHHHccCcccCeEEEEE
Q 026122          149 VAVARAVAEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       149 ~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                      +|+-..-.  ...++.+.+.|+++|+++..
T Consensus       242 ~v~d~~G~--~~~~~~~~~~l~~~G~iv~~  269 (345)
T 3jv7_A          242 AVFDFVGA--QSTIDTAQQVVAVDGHISVV  269 (345)
T ss_dssp             EEEESSCC--HHHHHHHHHHEEEEEEEEEC
T ss_pred             EEEECCCC--HHHHHHHHHHHhcCCEEEEE
Confidence            99975432  34567778899999998765

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=96.94  E-value=0.0016  Score=56.52  Aligned_cols=95  Identities=16%  Similarity=0.117  Sum_probs=61.7

Q ss_pred             CCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcc---ccc----cccCCcCCC
Q 026122           74 NSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGR---AET----LGKDVSFRE  145 (243)
Q Consensus        74 ~~~~~VLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d---~~~----~~~~~~~~~  145 (243)
                      +++.+||-+|+|. |..++.+|+..+..+|+++|.+++..+.++    ++|...  ++..+   -.+    +... . ..
T Consensus       170 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~----~lGa~~--vi~~~~~~~~~~~~~i~~~-~-~~  241 (356)
T 1pl8_A          170 TLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAK----EIGADL--VLQISKESPQEIARKVEGQ-L-GC  241 (356)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH----HTTCSE--EEECSSCCHHHHHHHHHHH-H-TS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH----HhCCCE--EEcCcccccchHHHHHHHH-h-CC
Confidence            4588999999874 677777887764339999999998666554    456542  23222   111    1110 0 14


Q ss_pred             CceEEEEcCcccHHHHHHHHccCcccCeEEEEE
Q 026122          146 QYDVAVARAVAEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       146 ~fD~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                      .+|+|+-..-.  ...++.+.+.|++||+++.+
T Consensus       242 g~D~vid~~g~--~~~~~~~~~~l~~~G~iv~~  272 (356)
T 1pl8_A          242 KPEVTIECTGA--EASIQAGIYATRSGGTLVLV  272 (356)
T ss_dssp             CCSEEEECSCC--HHHHHHHHHHSCTTCEEEEC
T ss_pred             CCCEEEECCCC--hHHHHHHHHHhcCCCEEEEE
Confidence            69999975432  34456777899999998764

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=96.81  E-value=0.00091  Score=58.90  Aligned_cols=98  Identities=15%  Similarity=0.059  Sum_probs=63.0

Q ss_pred             CCCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcccc-----ccccCCcCCCC
Q 026122           73 CNSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAE-----TLGKDVSFREQ  146 (243)
Q Consensus        73 ~~~~~~VLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~-----~~~~~~~~~~~  146 (243)
                      ++++.+||-+|||. |..++.+|+..+..+|+++|.+++.++.++    ++|..   .+..+-.     .+... .....
T Consensus       183 ~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~----~lGa~---~i~~~~~~~~~~~v~~~-t~g~g  254 (398)
T 1kol_A          183 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAK----AQGFE---IADLSLDTPLHEQIAAL-LGEPE  254 (398)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH----HTTCE---EEETTSSSCHHHHHHHH-HSSSC
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHH----HcCCc---EEccCCcchHHHHHHHH-hCCCC
Confidence            35589999999875 777788888764448999999998777664    45652   2322111     11100 00136


Q ss_pred             ceEEEEcCccc-------------HHHHHHHHccCcccCeEEEEE
Q 026122          147 YDVAVARAVAE-------------MRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       147 fD~I~~~~~~~-------------~~~~l~~~~~~LkpgG~l~~~  178 (243)
                      +|+|+-..-..             ....++.+.+.|++||++++.
T Consensus       255 ~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~  299 (398)
T 1kol_A          255 VDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP  299 (398)
T ss_dssp             EEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred             CCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEe
Confidence            99999754221             224677788899999998764

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=96.79  E-value=0.0024  Score=55.15  Aligned_cols=91  Identities=13%  Similarity=0.102  Sum_probs=62.1

Q ss_pred             CCCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEE
Q 026122           73 CNSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        73 ~~~~~~VLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      ++++.+||-+|+|. |..++.+|+.. +++|+++|.+++..+.++    ++|.+.+  + .+...+      ...+|+|+
T Consensus       174 ~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~----~lGa~~v--~-~~~~~~------~~~~D~vi  239 (348)
T 3two_A          174 VTKGTKVGVAGFGGLGSMAVKYAVAM-GAEVSVFARNEHKKQDAL----SMGVKHF--Y-TDPKQC------KEELDFII  239 (348)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHT-TCEEEEECSSSTTHHHHH----HTTCSEE--E-SSGGGC------CSCEEEEE
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHH----hcCCCee--c-CCHHHH------hcCCCEEE
Confidence            35589999999874 66777778776 569999999998776654    4665432  2 333322      13799999


Q ss_pred             EcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122          152 ARAVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       152 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      -..-..  ..++.+.+.|+++|+++..-
T Consensus       240 d~~g~~--~~~~~~~~~l~~~G~iv~~G  265 (348)
T 3two_A          240 STIPTH--YDLKDYLKLLTYNGDLALVG  265 (348)
T ss_dssp             ECCCSC--CCHHHHHTTEEEEEEEEECC
T ss_pred             ECCCcH--HHHHHHHHHHhcCCEEEEEC
Confidence            643221  13456778999999988753

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=96.78  E-value=0.0018  Score=55.66  Aligned_cols=97  Identities=15%  Similarity=0.078  Sum_probs=63.5

Q ss_pred             CCCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC-cCCCCceEE
Q 026122           73 CNSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-SFREQYDVA  150 (243)
Q Consensus        73 ~~~~~~VLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-~~~~~fD~I  150 (243)
                      ++++.+||-+|+|. |..++.+|+.. +++|+++|.+++..+.++    ++|...  ++..+-.++.... ...+.+|+|
T Consensus       164 ~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~----~lGa~~--~i~~~~~~~~~~~~~~~g~~d~v  236 (340)
T 3s2e_A          164 TRPGQWVVISGIGGLGHVAVQYARAM-GLRVAAVDIDDAKLNLAR----RLGAEV--AVNARDTDPAAWLQKEIGGAHGV  236 (340)
T ss_dssp             CCTTSEEEEECCSTTHHHHHHHHHHT-TCEEEEEESCHHHHHHHH----HTTCSE--EEETTTSCHHHHHHHHHSSEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHH----HcCCCE--EEeCCCcCHHHHHHHhCCCCCEE
Confidence            35588999999975 77888888876 569999999998777654    456532  2222211111000 001368999


Q ss_pred             EEcCcccHHHHHHHHccCcccCeEEEEE
Q 026122          151 VARAVAEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       151 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                      +-....  ...++.+.+.|+++|+++..
T Consensus       237 id~~g~--~~~~~~~~~~l~~~G~iv~~  262 (340)
T 3s2e_A          237 LVTAVS--PKAFSQAIGMVRRGGTIALN  262 (340)
T ss_dssp             EESSCC--HHHHHHHHHHEEEEEEEEEC
T ss_pred             EEeCCC--HHHHHHHHHHhccCCEEEEe
Confidence            875432  34567777899999998764

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=96.69  E-value=0.0021  Score=56.09  Aligned_cols=99  Identities=17%  Similarity=0.081  Sum_probs=63.0

Q ss_pred             CCCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEc---cccccccC--CcCCCC
Q 026122           73 CNSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRG---RAETLGKD--VSFREQ  146 (243)
Q Consensus        73 ~~~~~~VLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~---d~~~~~~~--~~~~~~  146 (243)
                      ++++.+||=+|+|. |..++.+|+..+..+|+++|.+++..+.+++    +|...  ++..   |..+....  ....+.
T Consensus       180 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~~--vi~~~~~~~~~~i~~~~~~~~gg  253 (370)
T 4ej6_A          180 IKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEE----VGATA--TVDPSAGDVVEAIAGPVGLVPGG  253 (370)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHH----HTCSE--EECTTSSCHHHHHHSTTSSSTTC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCCE--EECCCCcCHHHHHHhhhhccCCC
Confidence            35588999999874 6677778877644499999999987666544    56542  2221   21111000  001247


Q ss_pred             ceEEEEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122          147 YDVAVARAVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       147 fD~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      +|+|+-..-.  ...++.+.+.|++||++++.-
T Consensus       254 ~Dvvid~~G~--~~~~~~~~~~l~~~G~vv~~G  284 (370)
T 4ej6_A          254 VDVVIECAGV--AETVKQSTRLAKAGGTVVILG  284 (370)
T ss_dssp             EEEEEECSCC--HHHHHHHHHHEEEEEEEEECS
T ss_pred             CCEEEECCCC--HHHHHHHHHHhccCCEEEEEe
Confidence            9999975322  345677778999999987653

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=96.66  E-value=0.00083  Score=58.15  Aligned_cols=98  Identities=11%  Similarity=0.050  Sum_probs=60.7

Q ss_pred             CCCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcccccccc---CCcCCCCce
Q 026122           73 CNSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK---DVSFREQYD  148 (243)
Q Consensus        73 ~~~~~~VLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~---~~~~~~~fD  148 (243)
                      ++++.+||=+|+|. |..++.+|+..+..+|+++|.+++..+.+++    +|..  .++..+-.++..   .......+|
T Consensus       164 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~--~vi~~~~~~~~~~v~~~t~g~g~D  237 (352)
T 3fpc_A          164 IKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALE----YGAT--DIINYKNGDIVEQILKATDGKGVD  237 (352)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHH----HTCC--EEECGGGSCHHHHHHHHTTTCCEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCCc--eEEcCCCcCHHHHHHHHcCCCCCC
Confidence            45689999999874 6667777776543389999999987666644    5543  233222111110   000013699


Q ss_pred             EEEEcCcccHHHHHHHHccCcccCeEEEEE
Q 026122          149 VAVARAVAEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       149 ~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                      +|+-..-.  ...++.+.+.|++||+++..
T Consensus       238 ~v~d~~g~--~~~~~~~~~~l~~~G~~v~~  265 (352)
T 3fpc_A          238 KVVIAGGD--VHTFAQAVKMIKPGSDIGNV  265 (352)
T ss_dssp             EEEECSSC--TTHHHHHHHHEEEEEEEEEC
T ss_pred             EEEECCCC--hHHHHHHHHHHhcCCEEEEe
Confidence            99964322  23456677789999998754

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=96.66  E-value=0.0012  Score=52.12  Aligned_cols=95  Identities=9%  Similarity=0.079  Sum_probs=57.4

Q ss_pred             CCCCeEEEEcCC--CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccc----cccCCcCCCCc
Q 026122           74 NSNLKLVDVGTG--AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAET----LGKDVSFREQY  147 (243)
Q Consensus        74 ~~~~~VLDiGcG--~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~----~~~~~~~~~~f  147 (243)
                      +++.+||..|++  .|.....+++.. +++|+++|.+++..+.++    ..+.. . ++..+-.+    +... .....+
T Consensus        37 ~~g~~vlV~Ga~ggiG~~~~~~~~~~-G~~V~~~~~~~~~~~~~~----~~g~~-~-~~d~~~~~~~~~~~~~-~~~~~~  108 (198)
T 1pqw_A           37 SPGERVLIHSATGGVGMAAVSIAKMI-GARIYTTAGSDAKREMLS----RLGVE-Y-VGDSRSVDFADEILEL-TDGYGV  108 (198)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHH----TTCCS-E-EEETTCSTHHHHHHHH-TTTCCE
T ss_pred             CCCCEEEEeeCCChHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHH----HcCCC-E-EeeCCcHHHHHHHHHH-hCCCCC
Confidence            448899999953  344444455443 579999999987665543    34543 1 22111111    1000 001369


Q ss_pred             eEEEEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122          148 DVAVARAVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       148 D~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      |+++.+..   ...++.+.+.|++||+++.+.
T Consensus       109 D~vi~~~g---~~~~~~~~~~l~~~G~~v~~g  137 (198)
T 1pqw_A          109 DVVLNSLA---GEAIQRGVQILAPGGRFIELG  137 (198)
T ss_dssp             EEEEECCC---THHHHHHHHTEEEEEEEEECS
T ss_pred             eEEEECCc---hHHHHHHHHHhccCCEEEEEc
Confidence            99997653   245677888999999987653

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=96.61  E-value=0.0045  Score=53.49  Aligned_cols=96  Identities=13%  Similarity=0.111  Sum_probs=60.7

Q ss_pred             CCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccc-cc----cccCCc--CCC
Q 026122           74 NSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRA-ET----LGKDVS--FRE  145 (243)
Q Consensus        74 ~~~~~VLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~-~~----~~~~~~--~~~  145 (243)
                      +++.+||-+|+|. |..++.+|+.. +++|+++|.+++..+.++    ++|.+.  ++..+- .+    +.....  ...
T Consensus       167 ~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~----~lGa~~--~~~~~~~~~~~~~i~~~~~~~~g~  239 (352)
T 1e3j_A          167 QLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAK----NCGADV--TLVVDPAKEEESSIIERIRSAIGD  239 (352)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHH----HTTCSE--EEECCTTTSCHHHHHHHHHHHSSS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHH----HhCCCE--EEcCcccccHHHHHHHHhccccCC
Confidence            4588999999864 66667777765 567999999998766654    456542  222110 11    110000  014


Q ss_pred             CceEEEEcCcccHHHHHHHHccCcccCeEEEEE
Q 026122          146 QYDVAVARAVAEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       146 ~fD~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                      .+|+|+-..-.  ...++.+.+.|+++|+++.+
T Consensus       240 g~D~vid~~g~--~~~~~~~~~~l~~~G~iv~~  270 (352)
T 1e3j_A          240 LPNVTIDCSGN--EKCITIGINITRTGGTLMLV  270 (352)
T ss_dssp             CCSEEEECSCC--HHHHHHHHHHSCTTCEEEEC
T ss_pred             CCCEEEECCCC--HHHHHHHHHHHhcCCEEEEE
Confidence            69999975432  33456777899999998765

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=96.52  E-value=0.0043  Score=54.12  Aligned_cols=95  Identities=17%  Similarity=0.149  Sum_probs=60.7

Q ss_pred             CCCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEE
Q 026122           73 CNSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        73 ~~~~~~VLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      ++++.+||-+|+|. |..++.+|+.. +++|+++|.+++..+.+++    +|..  .++..+-.+....  ..+.+|+|+
T Consensus       192 ~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~Vi~~~~~~~~~~~a~~----lGa~--~vi~~~~~~~~~~--~~~g~Dvvi  262 (369)
T 1uuf_A          192 AGPGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKA----LGAD--EVVNSRNADEMAA--HLKSFDFIL  262 (369)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHH----HTCS--EEEETTCHHHHHT--TTTCEEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----cCCc--EEeccccHHHHHH--hhcCCCEEE
Confidence            34589999999874 66677777775 5789999999987776653    5543  2222211111111  114699999


Q ss_pred             EcCcccHHHHHHHHccCcccCeEEEEE
Q 026122          152 ARAVAEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       152 ~~~~~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                      -....  ...++.+.+.|+++|+++..
T Consensus       263 d~~g~--~~~~~~~~~~l~~~G~iv~~  287 (369)
T 1uuf_A          263 NTVAA--PHNLDDFTTLLKRDGTMTLV  287 (369)
T ss_dssp             ECCSS--CCCHHHHHTTEEEEEEEEEC
T ss_pred             ECCCC--HHHHHHHHHHhccCCEEEEe
Confidence            75422  11245667899999997764

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=96.46  E-value=0.0036  Score=54.47  Aligned_cols=94  Identities=13%  Similarity=0.057  Sum_probs=61.7

Q ss_pred             CCCeEEEEc-CC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEc--cccc-cccCCcCCCCceE
Q 026122           75 SNLKLVDVG-TG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRG--RAET-LGKDVSFREQYDV  149 (243)
Q Consensus        75 ~~~~VLDiG-cG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~--d~~~-~~~~~~~~~~fD~  149 (243)
                      ++.+||=+| +| .|..++.+|+...+++|+++|.+++..+.++    ++|.+.  ++..  +..+ +...  ..+.+|+
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~----~lGad~--vi~~~~~~~~~v~~~--~~~g~Dv  242 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVK----SLGAHH--VIDHSKPLAAEVAAL--GLGAPAF  242 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHH----HTTCSE--EECTTSCHHHHHHTT--CSCCEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHH----HcCCCE--EEeCCCCHHHHHHHh--cCCCceE
Confidence            478999998 54 4777788887645789999999998777664    466542  2221  1111 1111  1257999


Q ss_pred             EEEcCcccHHHHHHHHccCcccCeEEEEE
Q 026122          150 AVARAVAEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       150 I~~~~~~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                      |+-....  ...++.+.+.|+++|+++..
T Consensus       243 vid~~g~--~~~~~~~~~~l~~~G~iv~~  269 (363)
T 4dvj_A          243 VFSTTHT--DKHAAEIADLIAPQGRFCLI  269 (363)
T ss_dssp             EEECSCH--HHHHHHHHHHSCTTCEEEEC
T ss_pred             EEECCCc--hhhHHHHHHHhcCCCEEEEE
Confidence            9875332  34567777899999998865

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=96.44  E-value=0.0059  Score=52.90  Aligned_cols=99  Identities=14%  Similarity=0.052  Sum_probs=61.9

Q ss_pred             CCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEE-----ccccc-cccCCcCCCC
Q 026122           74 NSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVR-----GRAET-LGKDVSFREQ  146 (243)
Q Consensus        74 ~~~~~VLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~-----~d~~~-~~~~~~~~~~  146 (243)
                      +++.+||=+|+|. |..++.+|+..+...|+++|.+++..+.+++. .   ..-+....     .++.+ +... .....
T Consensus       178 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~---~~~~~~~~~~~~~~~~~~~v~~~-t~g~g  252 (363)
T 3m6i_A          178 RLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-C---PEVVTHKVERLSAEESAKKIVES-FGGIE  252 (363)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-C---TTCEEEECCSCCHHHHHHHHHHH-TSSCC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-c---hhcccccccccchHHHHHHHHHH-hCCCC
Confidence            4588999999864 66777888776433499999999988887764 1   11122221     11111 1000 00246


Q ss_pred             ceEEEEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122          147 YDVAVARAVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       147 fD~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      +|+|+-..-.  ...++.+.+.|++||+++..-
T Consensus       253 ~Dvvid~~g~--~~~~~~~~~~l~~~G~iv~~G  283 (363)
T 3m6i_A          253 PAVALECTGV--ESSIAAAIWAVKFGGKVFVIG  283 (363)
T ss_dssp             CSEEEECSCC--HHHHHHHHHHSCTTCEEEECC
T ss_pred             CCEEEECCCC--hHHHHHHHHHhcCCCEEEEEc
Confidence            9999975432  335567778999999988653

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=96.36  E-value=0.0047  Score=53.18  Aligned_cols=96  Identities=10%  Similarity=0.022  Sum_probs=60.4

Q ss_pred             CCCeEEEEcCCC-ChHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccc-cccccCCcCCCCceEEE
Q 026122           75 SNLKLVDVGTGA-GLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRA-ETLGKDVSFREQYDVAV  151 (243)
Q Consensus        75 ~~~~VLDiGcG~-G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~-~~~~~~~~~~~~fD~I~  151 (243)
                      ++.+||-+|+|. |..++.+|+.. |+++|+++|.+++..+.+++    +|.+.  ++..+- .+..........+|+|+
T Consensus       170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~----lGa~~--vi~~~~~~~~~~~~~~g~g~D~vi  243 (344)
T 2h6e_A          170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALE----LGADY--VSEMKDAESLINKLTDGLGASIAI  243 (344)
T ss_dssp             SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHH----HTCSE--EECHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHH----hCCCE--EeccccchHHHHHhhcCCCccEEE
Confidence            389999999963 55666777664 35799999999987776653    45432  222111 11100000013799999


Q ss_pred             EcCcccHHHHHHHHccCcccCeEEEEE
Q 026122          152 ARAVAEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       152 ~~~~~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                      -..-.  ...++.+.+.|+++|+++..
T Consensus       244 d~~g~--~~~~~~~~~~l~~~G~iv~~  268 (344)
T 2h6e_A          244 DLVGT--EETTYNLGKLLAQEGAIILV  268 (344)
T ss_dssp             ESSCC--HHHHHHHHHHEEEEEEEEEC
T ss_pred             ECCCC--hHHHHHHHHHhhcCCEEEEe
Confidence            75432  33567777899999998764

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=96.33  E-value=0.0026  Score=55.29  Aligned_cols=97  Identities=18%  Similarity=0.023  Sum_probs=61.7

Q ss_pred             CCCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcccccccc---CCcCCCCce
Q 026122           73 CNSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK---DVSFREQYD  148 (243)
Q Consensus        73 ~~~~~~VLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~---~~~~~~~fD  148 (243)
                      ++++.+||-+|+|. |..++.+|+.. +++|+++|.+++.++.++    ++|...  ++..+-.++..   .......+|
T Consensus       187 ~~~g~~VlV~G~G~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~----~lGa~~--vi~~~~~~~~~~v~~~~~g~g~D  259 (363)
T 3uog_A          187 LRAGDRVVVQGTGGVALFGLQIAKAT-GAEVIVTSSSREKLDRAF----ALGADH--GINRLEEDWVERVYALTGDRGAD  259 (363)
T ss_dssp             CCTTCEEEEESSBHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHH----HHTCSE--EEETTTSCHHHHHHHHHTTCCEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEecCchhHHHHH----HcCCCE--EEcCCcccHHHHHHHHhCCCCce
Confidence            45689999999774 66677777775 579999999998776654    456532  23222111110   000013699


Q ss_pred             EEEEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122          149 VAVARAVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       149 ~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      +|+-..-.   ..++.+.+.|+++|+++.+-
T Consensus       260 ~vid~~g~---~~~~~~~~~l~~~G~iv~~G  287 (363)
T 3uog_A          260 HILEIAGG---AGLGQSLKAVAPDGRISVIG  287 (363)
T ss_dssp             EEEEETTS---SCHHHHHHHEEEEEEEEEEC
T ss_pred             EEEECCCh---HHHHHHHHHhhcCCEEEEEe
Confidence            99965432   23556667899999988653

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=96.31  E-value=0.0023  Score=56.04  Aligned_cols=97  Identities=20%  Similarity=0.154  Sum_probs=60.6

Q ss_pred             CCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcc---ccc----cccCCcCCC
Q 026122           74 NSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGR---AET----LGKDVSFRE  145 (243)
Q Consensus        74 ~~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d---~~~----~~~~~~~~~  145 (243)
                      +++.+||-+|+| .|..++.+|+..+..+|+++|.+++..+.++    ++|..  .++..+   -.+    +... ....
T Consensus       194 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~----~lGa~--~vi~~~~~~~~~~~~~v~~~-~~g~  266 (380)
T 1vj0_A          194 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAE----EIGAD--LTLNRRETSVEERRKAIMDI-THGR  266 (380)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHH----HTTCS--EEEETTTSCHHHHHHHHHHH-TTTS
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHH----HcCCc--EEEeccccCcchHHHHHHHH-hCCC
Confidence            458899999966 3566677777764369999999998776654    45654  233222   111    1100 0013


Q ss_pred             CceEEEEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122          146 QYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       146 ~fD~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      .+|+|+-..-.  ...++.+.+.|+++|+++.+-
T Consensus       267 g~Dvvid~~g~--~~~~~~~~~~l~~~G~iv~~G  298 (380)
T 1vj0_A          267 GADFILEATGD--SRALLEGSELLRRGGFYSVAG  298 (380)
T ss_dssp             CEEEEEECSSC--TTHHHHHHHHEEEEEEEEECC
T ss_pred             CCcEEEECCCC--HHHHHHHHHHHhcCCEEEEEe
Confidence            69999975432  124556677899999977653

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=96.30  E-value=0.0045  Score=54.59  Aligned_cols=100  Identities=13%  Similarity=0.054  Sum_probs=60.1

Q ss_pred             CCCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccc---cCCcCCCCce
Q 026122           73 CNSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLG---KDVSFREQYD  148 (243)
Q Consensus        73 ~~~~~~VLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---~~~~~~~~fD  148 (243)
                      ++++.+||=+|+|. |..++.+|+..+..+|+++|.+++..+.++    ++|..  .++..+-.++.   ........+|
T Consensus       211 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~----~lGa~--~vi~~~~~~~~~~i~~~t~g~g~D  284 (404)
T 3ip1_A          211 IRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAK----ELGAD--HVIDPTKENFVEAVLDYTNGLGAK  284 (404)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHH----HHTCS--EEECTTTSCHHHHHHHHTTTCCCS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH----HcCCC--EEEcCCCCCHHHHHHHHhCCCCCC
Confidence            45688999999863 556677777764449999999998777665    44543  23322111111   0000013699


Q ss_pred             EEEEcCcc---cHHHHHHHHccCcccCeEEEEE
Q 026122          149 VAVARAVA---EMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       149 ~I~~~~~~---~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                      +|+-..-.   ....+++.+.+.++++|+++..
T Consensus       285 ~vid~~g~~~~~~~~~~~~l~~~~~~~G~iv~~  317 (404)
T 3ip1_A          285 LFLEATGVPQLVWPQIEEVIWRARGINATVAIV  317 (404)
T ss_dssp             EEEECSSCHHHHHHHHHHHHHHCSCCCCEEEEC
T ss_pred             EEEECCCCcHHHHHHHHHHHHhccCCCcEEEEe
Confidence            99965322   2334444444555999998764

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=96.25  E-value=0.0065  Score=52.90  Aligned_cols=98  Identities=12%  Similarity=0.078  Sum_probs=61.7

Q ss_pred             CCCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccc--cccccC--CcCCCCc
Q 026122           73 CNSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRA--ETLGKD--VSFREQY  147 (243)
Q Consensus        73 ~~~~~~VLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~--~~~~~~--~~~~~~f  147 (243)
                      ++++.+||-+|+|. |..++.+|+.....+|+++|.+++..+.++    ++|...  ++..+-  .++...  ....+.+
T Consensus       190 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~----~lGa~~--vi~~~~~~~~~~~~~~~~~~~g~  263 (374)
T 1cdo_A          190 VEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAK----VFGATD--FVNPNDHSEPISQVLSKMTNGGV  263 (374)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH----HTTCCE--EECGGGCSSCHHHHHHHHHTSCB
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH----HhCCce--EEeccccchhHHHHHHHHhCCCC
Confidence            45588999999864 666777777764338999999998777654    456532  222110  111100  0001369


Q ss_pred             eEEEEcCcccHHHHHHHHccCcccC-eEEEEE
Q 026122          148 DVAVARAVAEMRILAEYCLPLVRVG-GLFVAA  178 (243)
Q Consensus       148 D~I~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~  178 (243)
                      |+|+-..-.  ...++.+.+.|+++ |+++..
T Consensus       264 D~vid~~g~--~~~~~~~~~~l~~~~G~iv~~  293 (374)
T 1cdo_A          264 DFSLECVGN--VGVMRNALESCLKGWGVSVLV  293 (374)
T ss_dssp             SEEEECSCC--HHHHHHHHHTBCTTTCEEEEC
T ss_pred             CEEEECCCC--HHHHHHHHHHhhcCCcEEEEE
Confidence            999975432  34567778899999 998764

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=96.22  E-value=0.0064  Score=52.93  Aligned_cols=98  Identities=13%  Similarity=0.031  Sum_probs=61.5

Q ss_pred             CCCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccc--ccccc--CCcCCCCc
Q 026122           73 CNSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRA--ETLGK--DVSFREQY  147 (243)
Q Consensus        73 ~~~~~~VLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~--~~~~~--~~~~~~~f  147 (243)
                      ++++.+||-+|+|. |..++.+|+.....+|+++|.+++..+.++    ++|.+.  ++..+-  .++..  .....+.+
T Consensus       189 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~----~lGa~~--vi~~~~~~~~~~~~i~~~t~gg~  262 (373)
T 1p0f_A          189 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAI----ELGATE--CLNPKDYDKPIYEVICEKTNGGV  262 (373)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH----HTTCSE--EECGGGCSSCHHHHHHHHTTSCB
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH----HcCCcE--EEecccccchHHHHHHHHhCCCC
Confidence            45689999999863 666677777664348999999998766654    456542  222110  11100  00001379


Q ss_pred             eEEEEcCcccHHHHHHHHccCcccC-eEEEEE
Q 026122          148 DVAVARAVAEMRILAEYCLPLVRVG-GLFVAA  178 (243)
Q Consensus       148 D~I~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~  178 (243)
                      |+|+-..-.  ...++.+.+.|+++ |+++..
T Consensus       263 Dvvid~~g~--~~~~~~~~~~l~~~~G~iv~~  292 (373)
T 1p0f_A          263 DYAVECAGR--IETMMNALQSTYCGSGVTVVL  292 (373)
T ss_dssp             SEEEECSCC--HHHHHHHHHTBCTTTCEEEEC
T ss_pred             CEEEECCCC--HHHHHHHHHHHhcCCCEEEEE
Confidence            999975422  34567778899999 998764

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=96.16  E-value=0.006  Score=52.15  Aligned_cols=98  Identities=10%  Similarity=0.035  Sum_probs=59.8

Q ss_pred             CCCCCeEEEEcC--CCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcccccccc--CCcCCCCce
Q 026122           73 CNSNLKLVDVGT--GAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK--DVSFREQYD  148 (243)
Q Consensus        73 ~~~~~~VLDiGc--G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--~~~~~~~fD  148 (243)
                      ++++.+||-.||  |.|.....+++.. +++|+++|.+++.++.+    +.++.. ..+-..+..++..  .....+.+|
T Consensus       143 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~-G~~V~~~~~~~~~~~~~----~~~g~~-~~~d~~~~~~~~~~~~~~~~~~~d  216 (333)
T 1v3u_A          143 VKGGETVLVSAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKIAYL----KQIGFD-AAFNYKTVNSLEEALKKASPDGYD  216 (333)
T ss_dssp             CCSSCEEEEESTTBHHHHHHHHHHHHT-TCEEEEEESSHHHHHHH----HHTTCS-EEEETTSCSCHHHHHHHHCTTCEE
T ss_pred             CCCCCEEEEecCCCcHHHHHHHHHHHC-CCEEEEEeCCHHHHHHH----HhcCCc-EEEecCCHHHHHHHHHHHhCCCCe
Confidence            455889999998  3455555555554 57999999998766655    334542 1111111011100  000014699


Q ss_pred             EEEEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122          149 VAVARAVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       149 ~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      +++.++-.   ..++.+.+.|++||+++++-
T Consensus       217 ~vi~~~g~---~~~~~~~~~l~~~G~~v~~g  244 (333)
T 1v3u_A          217 CYFDNVGG---EFLNTVLSQMKDFGKIAICG  244 (333)
T ss_dssp             EEEESSCH---HHHHHHHTTEEEEEEEEECC
T ss_pred             EEEECCCh---HHHHHHHHHHhcCCEEEEEe
Confidence            99987643   24678889999999987653

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=96.09  E-value=0.0088  Score=52.10  Aligned_cols=97  Identities=9%  Similarity=0.070  Sum_probs=61.2

Q ss_pred             CCCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcc-----ccccccCCcCCCC
Q 026122           73 CNSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGR-----AETLGKDVSFREQ  146 (243)
Q Consensus        73 ~~~~~~VLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d-----~~~~~~~~~~~~~  146 (243)
                      ++++.+||-+|+|. |..++.+|+.....+|+++|.+++..+.++    ++|...  ++..+     +.+.... ...+.
T Consensus       193 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~----~lGa~~--vi~~~~~~~~~~~~v~~-~~~~g  265 (376)
T 1e3i_A          193 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAK----ALGATD--CLNPRELDKPVQDVITE-LTAGG  265 (376)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH----HTTCSE--EECGGGCSSCHHHHHHH-HHTSC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH----HhCCcE--EEccccccchHHHHHHH-HhCCC
Confidence            45588999999863 666677777764348999999998766654    456532  22211     1110000 00136


Q ss_pred             ceEEEEcCcccHHHHHHHHccCcccC-eEEEEE
Q 026122          147 YDVAVARAVAEMRILAEYCLPLVRVG-GLFVAA  178 (243)
Q Consensus       147 fD~I~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~  178 (243)
                      +|+|+-..-.  ...++.+.+.|+++ |+++..
T Consensus       266 ~Dvvid~~G~--~~~~~~~~~~l~~~~G~iv~~  296 (376)
T 1e3i_A          266 VDYSLDCAGT--AQTLKAAVDCTVLGWGSCTVV  296 (376)
T ss_dssp             BSEEEESSCC--HHHHHHHHHTBCTTTCEEEEC
T ss_pred             ccEEEECCCC--HHHHHHHHHHhhcCCCEEEEE
Confidence            9999975432  34567778899999 998754

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=96.08  E-value=0.016  Score=49.62  Aligned_cols=99  Identities=17%  Similarity=0.008  Sum_probs=59.9

Q ss_pred             CCCCeEEEEcCCCC-hHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccccccCCcCCCCceEEE
Q 026122           74 NSNLKLVDVGTGAG-LPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        74 ~~~~~VLDiGcG~G-~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      +++.+||=+|+|++ ..++.+++...+.+|+++|.+++..+.++    ++|... +.....|..+..........+|.++
T Consensus       162 ~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~----~~Ga~~~i~~~~~~~~~~v~~~t~g~g~d~~~  237 (348)
T 4eez_A          162 KPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAK----KIGADVTINSGDVNPVDEIKKITGGLGVQSAI  237 (348)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHH----HTTCSEEEEC-CCCHHHHHHHHTTSSCEEEEE
T ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhh----hcCCeEEEeCCCCCHHHHhhhhcCCCCceEEE
Confidence            45889999999864 35555666666789999999998665544    455432 2222222221100000013577777


Q ss_pred             EcCcccHHHHHHHHccCcccCeEEEEE
Q 026122          152 ARAVAEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       152 ~~~~~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                      .....  ...+..+.+.|+++|++++.
T Consensus       238 ~~~~~--~~~~~~~~~~l~~~G~~v~~  262 (348)
T 4eez_A          238 VCAVA--RIAFEQAVASLKPMGKMVAV  262 (348)
T ss_dssp             ECCSC--HHHHHHHHHTEEEEEEEEEC
T ss_pred             EeccC--cchhheeheeecCCceEEEE
Confidence            65433  44566777899999997754

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=96.03  E-value=0.0049  Score=53.82  Aligned_cols=98  Identities=12%  Similarity=0.033  Sum_probs=61.8

Q ss_pred             CCCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcc--cccccc--CCcCCCCc
Q 026122           73 CNSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGR--AETLGK--DVSFREQY  147 (243)
Q Consensus        73 ~~~~~~VLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d--~~~~~~--~~~~~~~f  147 (243)
                      ++++.+||=+|+|. |..++.+|+..+..+|+++|.+++.++.++    ++|...  ++..+  -.++..  .....+.+
T Consensus       191 ~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~----~lGa~~--vi~~~~~~~~~~~~i~~~~~gg~  264 (378)
T 3uko_A          191 VEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAK----KFGVNE--FVNPKDHDKPIQEVIVDLTDGGV  264 (378)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHH----TTTCCE--EECGGGCSSCHHHHHHHHTTSCB
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH----HcCCcE--EEccccCchhHHHHHHHhcCCCC
Confidence            45688999999863 667777777764448999999998776554    456542  22211  111100  00011479


Q ss_pred             eEEEEcCcccHHHHHHHHccCcccC-eEEEEE
Q 026122          148 DVAVARAVAEMRILAEYCLPLVRVG-GLFVAA  178 (243)
Q Consensus       148 D~I~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~  178 (243)
                      |+|+-..-.  ...++.+.+.|++| |++++.
T Consensus       265 D~vid~~g~--~~~~~~~~~~l~~g~G~iv~~  294 (378)
T 3uko_A          265 DYSFECIGN--VSVMRAALECCHKGWGTSVIV  294 (378)
T ss_dssp             SEEEECSCC--HHHHHHHHHTBCTTTCEEEEC
T ss_pred             CEEEECCCC--HHHHHHHHHHhhccCCEEEEE
Confidence            999965432  34567778899996 997764

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=96.00  E-value=0.0039  Score=53.64  Aligned_cols=97  Identities=14%  Similarity=0.045  Sum_probs=59.8

Q ss_pred             CCCCCeEEEEcCCC--ChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcccccccc---CCcCCCCc
Q 026122           73 CNSNLKLVDVGTGA--GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK---DVSFREQY  147 (243)
Q Consensus        73 ~~~~~~VLDiGcG~--G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~---~~~~~~~f  147 (243)
                      ++++.+||-+|+|+  |..++.+++.. +++|+++|.+++.++.+++    +|..  .++..+-.++..   .......+
T Consensus       142 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~----lga~--~~~~~~~~~~~~~~~~~~~~~g~  214 (340)
T 3gms_A          142 LQRNDVLLVNACGSAIGHLFAQLSQIL-NFRLIAVTRNNKHTEELLR----LGAA--YVIDTSTAPLYETVMELTNGIGA  214 (340)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHH----HTCS--EEEETTTSCHHHHHHHHTTTSCE
T ss_pred             cCCCCEEEEeCCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHh----CCCc--EEEeCCcccHHHHHHHHhCCCCC
Confidence            45689999999974  55666777665 5799999999987776654    4543  222221111110   00001369


Q ss_pred             eEEEEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122          148 DVAVARAVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       148 D~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      |+|+-..-..  .. ....+.|+++|+++..-
T Consensus       215 Dvvid~~g~~--~~-~~~~~~l~~~G~iv~~G  243 (340)
T 3gms_A          215 DAAIDSIGGP--DG-NELAFSLRPNGHFLTIG  243 (340)
T ss_dssp             EEEEESSCHH--HH-HHHHHTEEEEEEEEECC
T ss_pred             cEEEECCCCh--hH-HHHHHHhcCCCEEEEEe
Confidence            9999765332  12 22347899999988753

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=96.00  E-value=0.0099  Score=51.72  Aligned_cols=97  Identities=10%  Similarity=0.012  Sum_probs=61.0

Q ss_pred             CCCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcc-----ccccccCCcCCCC
Q 026122           73 CNSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGR-----AETLGKDVSFREQ  146 (243)
Q Consensus        73 ~~~~~~VLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d-----~~~~~~~~~~~~~  146 (243)
                      ++++.+||-+|+|. |..++.+|+.....+|+++|.+++..+.++    ++|...  ++..+     +.+.... ...+.
T Consensus       189 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~----~lGa~~--vi~~~~~~~~~~~~~~~-~~~~g  261 (374)
T 2jhf_A          189 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAK----EVGATE--CVNPQDYKKPIQEVLTE-MSNGG  261 (374)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH----HTTCSE--EECGGGCSSCHHHHHHH-HTTSC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH----HhCCce--EecccccchhHHHHHHH-HhCCC
Confidence            45688999999864 666677777764338999999998776654    456532  22211     1110000 00136


Q ss_pred             ceEEEEcCcccHHHHHHHHccCcccC-eEEEEE
Q 026122          147 YDVAVARAVAEMRILAEYCLPLVRVG-GLFVAA  178 (243)
Q Consensus       147 fD~I~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~  178 (243)
                      +|+|+-..-.  ...++.+.+.|+++ |+++..
T Consensus       262 ~D~vid~~g~--~~~~~~~~~~l~~~~G~iv~~  292 (374)
T 2jhf_A          262 VDFSFEVIGR--LDTMVTALSCCQEAYGVSVIV  292 (374)
T ss_dssp             BSEEEECSCC--HHHHHHHHHHBCTTTCEEEEC
T ss_pred             CcEEEECCCC--HHHHHHHHHHhhcCCcEEEEe
Confidence            9999975432  34566777899999 997764

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=95.99  E-value=0.0088  Score=51.98  Aligned_cols=98  Identities=9%  Similarity=0.017  Sum_probs=61.2

Q ss_pred             CCCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccc--ccccc--CCcCCCCc
Q 026122           73 CNSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRA--ETLGK--DVSFREQY  147 (243)
Q Consensus        73 ~~~~~~VLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~--~~~~~--~~~~~~~f  147 (243)
                      ++++.+||-+|+|. |..++.+|+.....+|+++|.+++..+.++    ++|...  ++..+-  .++..  .....+.+
T Consensus       188 ~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~----~lGa~~--vi~~~~~~~~~~~~v~~~~~~g~  261 (373)
T 2fzw_A          188 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAK----EFGATE--CINPQDFSKPIQEVLIEMTDGGV  261 (373)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH----HHTCSE--EECGGGCSSCHHHHHHHHTTSCB
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH----HcCCce--EeccccccccHHHHHHHHhCCCC
Confidence            45688999999864 556677777654338999999998777664    355532  222110  11100  00001369


Q ss_pred             eEEEEcCcccHHHHHHHHccCcccC-eEEEEE
Q 026122          148 DVAVARAVAEMRILAEYCLPLVRVG-GLFVAA  178 (243)
Q Consensus       148 D~I~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~  178 (243)
                      |+|+-..-.  ...++.+.+.|+++ |+++..
T Consensus       262 D~vid~~g~--~~~~~~~~~~l~~~~G~iv~~  291 (373)
T 2fzw_A          262 DYSFECIGN--VKVMRAALEACHKGWGVSVVV  291 (373)
T ss_dssp             SEEEECSCC--HHHHHHHHHTBCTTTCEEEEC
T ss_pred             CEEEECCCc--HHHHHHHHHhhccCCcEEEEE
Confidence            999975432  34567778899999 998764

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=95.98  E-value=0.0072  Score=52.07  Aligned_cols=98  Identities=11%  Similarity=0.007  Sum_probs=60.6

Q ss_pred             CCCCCeEEEEcCC--CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcc-ccccccC--CcCCCCc
Q 026122           73 CNSNLKLVDVGTG--AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGR-AETLGKD--VSFREQY  147 (243)
Q Consensus        73 ~~~~~~VLDiGcG--~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d-~~~~~~~--~~~~~~f  147 (243)
                      ++++.+||-+|++  .|..+..+++.. +++|+++|.+++..+.++    .++..  .++... -.++...  ....+.+
T Consensus       167 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~-Ga~V~~~~~~~~~~~~~~----~~g~~--~~~d~~~~~~~~~~~~~~~~~~~  239 (347)
T 2hcy_A          167 LMAGHWVAISGAAGGLGSLAVQYAKAM-GYRVLGIDGGEGKEELFR----SIGGE--VFIDFTKEKDIVGAVLKATDGGA  239 (347)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECSTTHHHHHH----HTTCC--EEEETTTCSCHHHHHHHHHTSCE
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHC-CCcEEEEcCCHHHHHHHH----HcCCc--eEEecCccHhHHHHHHHHhCCCC
Confidence            3558899999983  455556666654 579999999987665554    34543  122111 1111100  0001269


Q ss_pred             eEEEEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122          148 DVAVARAVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       148 D~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      |+|+.+.-.  ...++.+.+.|+++|+++.+.
T Consensus       240 D~vi~~~g~--~~~~~~~~~~l~~~G~iv~~g  269 (347)
T 2hcy_A          240 HGVINVSVS--EAAIEASTRYVRANGTTVLVG  269 (347)
T ss_dssp             EEEEECSSC--HHHHHHHTTSEEEEEEEEECC
T ss_pred             CEEEECCCc--HHHHHHHHHHHhcCCEEEEEe
Confidence            999986532  356788889999999987653

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=95.97  E-value=0.0042  Score=53.07  Aligned_cols=97  Identities=14%  Similarity=0.012  Sum_probs=61.3

Q ss_pred             CCCCCeEEEEcC--CCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcccccccc---CCcCCCCc
Q 026122           73 CNSNLKLVDVGT--GAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK---DVSFREQY  147 (243)
Q Consensus        73 ~~~~~~VLDiGc--G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~---~~~~~~~f  147 (243)
                      ++++.+||-+|+  |.|..++.+++.. +++|+++|.+++.++.+++    +|..  .++..+-.++..   .......+
T Consensus       138 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~----~Ga~--~~~~~~~~~~~~~~~~~~~~~g~  210 (325)
T 3jyn_A          138 VKPGEIILFHAAAGGVGSLACQWAKAL-GAKLIGTVSSPEKAAHAKA----LGAW--ETIDYSHEDVAKRVLELTDGKKC  210 (325)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHH----HTCS--EEEETTTSCHHHHHHHHTTTCCE
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----cCCC--EEEeCCCccHHHHHHHHhCCCCc
Confidence            355889999983  3566666777665 5699999999987776653    4543  222222111110   00001469


Q ss_pred             eEEEEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122          148 DVAVARAVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       148 D~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      |+|+...-.   ..++.+.+.|+++|+++..-
T Consensus       211 Dvvid~~g~---~~~~~~~~~l~~~G~iv~~g  239 (325)
T 3jyn_A          211 PVVYDGVGQ---DTWLTSLDSVAPRGLVVSFG  239 (325)
T ss_dssp             EEEEESSCG---GGHHHHHTTEEEEEEEEECC
T ss_pred             eEEEECCCh---HHHHHHHHHhcCCCEEEEEe
Confidence            999976543   35667788999999988754

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=95.95  E-value=0.0052  Score=52.94  Aligned_cols=95  Identities=13%  Similarity=0.106  Sum_probs=60.8

Q ss_pred             CCCCCeEEEEcC--CCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcccccccc---CCcCCCCc
Q 026122           73 CNSNLKLVDVGT--GAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK---DVSFREQY  147 (243)
Q Consensus        73 ~~~~~~VLDiGc--G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~---~~~~~~~f  147 (243)
                      ++++.+||=+|+  |.|..++.+++.. +++|++++.+++..+.+++    +|...  ++..+ .++..   .......+
T Consensus       157 ~~~g~~VlV~Gasg~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~----~ga~~--v~~~~-~~~~~~v~~~~~~~g~  228 (342)
T 4eye_A          157 LRAGETVLVLGAAGGIGTAAIQIAKGM-GAKVIAVVNRTAATEFVKS----VGADI--VLPLE-EGWAKAVREATGGAGV  228 (342)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHH----HTCSE--EEESS-TTHHHHHHHHTTTSCE
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHh----cCCcE--EecCc-hhHHHHHHHHhCCCCc
Confidence            355899999997  3566777777775 5699999999987766654    45432  22222 22110   00001369


Q ss_pred             eEEEEcCcccHHHHHHHHccCcccCeEEEEE
Q 026122          148 DVAVARAVAEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       148 D~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                      |+|+-..-.   ..++.+.+.|+++|+++..
T Consensus       229 Dvvid~~g~---~~~~~~~~~l~~~G~iv~~  256 (342)
T 4eye_A          229 DMVVDPIGG---PAFDDAVRTLASEGRLLVV  256 (342)
T ss_dssp             EEEEESCC-----CHHHHHHTEEEEEEEEEC
T ss_pred             eEEEECCch---hHHHHHHHhhcCCCEEEEE
Confidence            999976433   2456777899999998864

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=95.95  E-value=0.0053  Score=52.84  Aligned_cols=97  Identities=12%  Similarity=0.045  Sum_probs=61.1

Q ss_pred             CCCCCeEEEEcC--CCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcccccccc---CCcCCCCc
Q 026122           73 CNSNLKLVDVGT--GAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK---DVSFREQY  147 (243)
Q Consensus        73 ~~~~~~VLDiGc--G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~---~~~~~~~f  147 (243)
                      ++++.+||-+|+  |.|..++.+++.. +++|+++|.+++.++.+++    +|...  ++..+-.++..   .......+
T Consensus       164 ~~~g~~vlV~Gasg~iG~~~~~~a~~~-G~~Vi~~~~~~~~~~~~~~----~ga~~--~~d~~~~~~~~~~~~~~~~~~~  236 (343)
T 2eih_A          164 VRPGDDVLVMAAGSGVSVAAIQIAKLF-GARVIATAGSEDKLRRAKA----LGADE--TVNYTHPDWPKEVRRLTGGKGA  236 (343)
T ss_dssp             CCTTCEEEECSTTSTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH----HTCSE--EEETTSTTHHHHHHHHTTTTCE
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHh----cCCCE--EEcCCcccHHHHHHHHhCCCCc
Confidence            455889999998  5666777777765 5699999999987776643    45432  22211111100   00001369


Q ss_pred             eEEEEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122          148 DVAVARAVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       148 D~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      |+|+...-.   ..++.+.+.|+++|+++.+.
T Consensus       237 d~vi~~~g~---~~~~~~~~~l~~~G~~v~~g  265 (343)
T 2eih_A          237 DKVVDHTGA---LYFEGVIKATANGGRIAIAG  265 (343)
T ss_dssp             EEEEESSCS---SSHHHHHHHEEEEEEEEESS
T ss_pred             eEEEECCCH---HHHHHHHHhhccCCEEEEEe
Confidence            999976542   34566677889999977643

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=95.93  E-value=0.0086  Score=52.00  Aligned_cols=97  Identities=14%  Similarity=0.174  Sum_probs=62.8

Q ss_pred             CCCCCeEEEEc--CCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccC--CcCCCCce
Q 026122           73 CNSNLKLVDVG--TGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD--VSFREQYD  148 (243)
Q Consensus        73 ~~~~~~VLDiG--cG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~--~~~~~~fD  148 (243)
                      ++++.+||-+|  .|.|..++.+++.. +++|+++|.+++..+.+++    +|..  .++..+-.++...  ......+|
T Consensus       161 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~----~Ga~--~~~~~~~~~~~~~~~~~~~~g~D  233 (362)
T 2c0c_A          161 LSEGKKVLVTAAAGGTGQFAMQLSKKA-KCHVIGTCSSDEKSAFLKS----LGCD--RPINYKTEPVGTVLKQEYPEGVD  233 (362)
T ss_dssp             CCTTCEEEETTTTBTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH----TTCS--EEEETTTSCHHHHHHHHCTTCEE
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHH----cCCc--EEEecCChhHHHHHHHhcCCCCC
Confidence            34588999999  45677777888776 5699999999887666543    5543  2222221111000  00114699


Q ss_pred             EEEEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122          149 VAVARAVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       149 ~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      +|+-..-.   ..++.+.+.|+++|+++.+.
T Consensus       234 ~vid~~g~---~~~~~~~~~l~~~G~iv~~g  261 (362)
T 2c0c_A          234 VVYESVGG---AMFDLAVDALATKGRLIVIG  261 (362)
T ss_dssp             EEEECSCT---HHHHHHHHHEEEEEEEEECC
T ss_pred             EEEECCCH---HHHHHHHHHHhcCCEEEEEe
Confidence            99976543   46677888999999987654

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=95.93  E-value=0.0041  Score=53.26  Aligned_cols=95  Identities=13%  Similarity=0.064  Sum_probs=60.1

Q ss_pred             CCCCeEEEEcC--CCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcccccccc---CCcCCCCce
Q 026122           74 NSNLKLVDVGT--GAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK---DVSFREQYD  148 (243)
Q Consensus        74 ~~~~~VLDiGc--G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~---~~~~~~~fD  148 (243)
                      +++.+||-+|+  |.|..++.+++.. +++|+++|.+++.++.++    ++|..  .++..+-.++..   .......+|
T Consensus       147 ~~g~~vlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~----~~ga~--~~~~~~~~~~~~~~~~~~~~~g~D  219 (334)
T 3qwb_A          147 KKGDYVLLFAAAGGVGLILNQLLKMK-GAHTIAVASTDEKLKIAK----EYGAE--YLINASKEDILRQVLKFTNGKGVD  219 (334)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHH----HTTCS--EEEETTTSCHHHHHHHHTTTSCEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHH----HcCCc--EEEeCCCchHHHHHHHHhCCCCce
Confidence            45889999994  3555666777665 579999999998766554    35543  222222121110   000014699


Q ss_pred             EEEEcCcccHHHHHHHHccCcccCeEEEEE
Q 026122          149 VAVARAVAEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       149 ~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                      +|+...-.   ..++.+.+.|++||+++..
T Consensus       220 ~vid~~g~---~~~~~~~~~l~~~G~iv~~  246 (334)
T 3qwb_A          220 ASFDSVGK---DTFEISLAALKRKGVFVSF  246 (334)
T ss_dssp             EEEECCGG---GGHHHHHHHEEEEEEEEEC
T ss_pred             EEEECCCh---HHHHHHHHHhccCCEEEEE
Confidence            99976543   3456677899999998865

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=95.91  E-value=0.0051  Score=53.36  Aligned_cols=97  Identities=19%  Similarity=0.231  Sum_probs=59.9

Q ss_pred             CCCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcccc-ccccCCcCCCCceEE
Q 026122           73 CNSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAE-TLGKDVSFREQYDVA  150 (243)
Q Consensus        73 ~~~~~~VLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~-~~~~~~~~~~~fD~I  150 (243)
                      ++++.+||-+|+|. |..++.+|+.. +++|+++|.+++..+.+++    +|...  ++..+-. ++...  ..+.+|+|
T Consensus       177 ~~~g~~VlV~GaG~vG~~~~qlak~~-Ga~Vi~~~~~~~~~~~~~~----lGa~~--v~~~~~~~~~~~~--~~~~~D~v  247 (360)
T 1piw_A          177 CGPGKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMK----MGADH--YIATLEEGDWGEK--YFDTFDLI  247 (360)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHH----HTCSE--EEEGGGTSCHHHH--SCSCEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHH----cCCCE--EEcCcCchHHHHH--hhcCCCEE
Confidence            34589999999853 55666777665 5689999999887766653    55432  2322111 21111  11469999


Q ss_pred             EEcCcccHHHHHHHHccCcccCeEEEEE
Q 026122          151 VARAVAEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       151 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                      +-.........++.+.+.|++||+++..
T Consensus       248 id~~g~~~~~~~~~~~~~l~~~G~iv~~  275 (360)
T 1piw_A          248 VVCASSLTDIDFNIMPKAMKVGGRIVSI  275 (360)
T ss_dssp             EECCSCSTTCCTTTGGGGEEEEEEEEEC
T ss_pred             EECCCCCcHHHHHHHHHHhcCCCEEEEe
Confidence            9754220012345677899999998754

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=95.89  E-value=0.007  Score=52.16  Aligned_cols=97  Identities=10%  Similarity=0.077  Sum_probs=61.2

Q ss_pred             CCCCCeEEEEcCCCC--hHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcccccc----ccCCcCC-C
Q 026122           73 CNSNLKLVDVGTGAG--LPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETL----GKDVSFR-E  145 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G--~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~----~~~~~~~-~  145 (243)
                      ++++.+||-+|+|+|  ..++.+++...+++|+++|.+++..+.+++    +|..  .++..+-.+.    ...  .. +
T Consensus       168 ~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~----~g~~--~~~~~~~~~~~~~~~~~--~~~~  239 (347)
T 1jvb_A          168 LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKR----AGAD--YVINASMQDPLAEIRRI--TESK  239 (347)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHH----HTCS--EEEETTTSCHHHHHHHH--TTTS
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCC--EEecCCCccHHHHHHHH--hcCC
Confidence            345889999999844  345555555425799999999987776643    4543  1222111111    100  11 4


Q ss_pred             CceEEEEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122          146 QYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       146 ~fD~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      .+|+|+.+.-.  ...++.+.+.|+++|+++..-
T Consensus       240 ~~d~vi~~~g~--~~~~~~~~~~l~~~G~iv~~g  271 (347)
T 1jvb_A          240 GVDAVIDLNNS--EKTLSVYPKALAKQGKYVMVG  271 (347)
T ss_dssp             CEEEEEESCCC--HHHHTTGGGGEEEEEEEEECC
T ss_pred             CceEEEECCCC--HHHHHHHHHHHhcCCEEEEEC
Confidence            69999986543  346678889999999987653

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=95.88  E-value=0.007  Score=51.83  Aligned_cols=97  Identities=14%  Similarity=0.098  Sum_probs=61.8

Q ss_pred             CCCCCeEEEEcCC--CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccC--CcCCCCce
Q 026122           73 CNSNLKLVDVGTG--AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD--VSFREQYD  148 (243)
Q Consensus        73 ~~~~~~VLDiGcG--~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~--~~~~~~fD  148 (243)
                      ++++.+||-+|++  .|..++.+++.. +++|+++|.+++..+.+.   +.+|..  .++..+-.++...  ....+.+|
T Consensus       147 ~~~g~~vlI~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~---~~~g~~--~~~~~~~~~~~~~~~~~~~~~~d  220 (336)
T 4b7c_A          147 PKNGETVVISGAAGAVGSVAGQIARLK-GCRVVGIAGGAEKCRFLV---EELGFD--GAIDYKNEDLAAGLKRECPKGID  220 (336)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHH---HTTCCS--EEEETTTSCHHHHHHHHCTTCEE
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHH---HHcCCC--EEEECCCHHHHHHHHHhcCCCce
Confidence            4568999999983  466666777665 569999999987655542   345553  2222211111100  00124699


Q ss_pred             EEEEcCcccHHHHHHHHccCcccCeEEEEE
Q 026122          149 VAVARAVAEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       149 ~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                      +|+.+.-.   ..++.+.+.|+++|+++..
T Consensus       221 ~vi~~~g~---~~~~~~~~~l~~~G~iv~~  247 (336)
T 4b7c_A          221 VFFDNVGG---EILDTVLTRIAFKARIVLC  247 (336)
T ss_dssp             EEEESSCH---HHHHHHHTTEEEEEEEEEC
T ss_pred             EEEECCCc---chHHHHHHHHhhCCEEEEE
Confidence            99976543   4678888999999998764

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=95.86  E-value=0.01  Score=50.05  Aligned_cols=91  Identities=15%  Similarity=0.091  Sum_probs=60.6

Q ss_pred             CCCCeEEEEcC--CCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccc-cccccCCcCCCCceEE
Q 026122           74 NSNLKLVDVGT--GAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRA-ETLGKDVSFREQYDVA  150 (243)
Q Consensus        74 ~~~~~VLDiGc--G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~-~~~~~~~~~~~~fD~I  150 (243)
                      +++.+||-+|+  |.|..++.+++.. +++|+++|.+++..+.++    ++|...  ++..+- .++...  . +.+|+|
T Consensus       124 ~~g~~vlV~Ga~G~vG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~----~~ga~~--~~~~~~~~~~~~~--~-~~~d~v  193 (302)
T 1iz0_A          124 RPGEKVLVQAAAGALGTAAVQVARAM-GLRVLAAASRPEKLALPL----ALGAEE--AATYAEVPERAKA--W-GGLDLV  193 (302)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSGGGSHHHH----HTTCSE--EEEGGGHHHHHHH--T-TSEEEE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHH----hcCCCE--EEECCcchhHHHH--h-cCceEE
Confidence            45889999997  3566677777765 569999999988766653    355432  222211 122111  1 469999


Q ss_pred             EEcCcccHHHHHHHHccCcccCeEEEEE
Q 026122          151 VARAVAEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       151 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                      +. .-.   ..++.+.+.|+++|+++..
T Consensus       194 id-~g~---~~~~~~~~~l~~~G~~v~~  217 (302)
T 1iz0_A          194 LE-VRG---KEVEESLGLLAHGGRLVYI  217 (302)
T ss_dssp             EE-CSC---TTHHHHHTTEEEEEEEEEC
T ss_pred             EE-CCH---HHHHHHHHhhccCCEEEEE
Confidence            98 533   3567888999999998764

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=95.85  E-value=0.0086  Score=51.45  Aligned_cols=97  Identities=18%  Similarity=0.094  Sum_probs=60.5

Q ss_pred             CCCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC-cCCCCceEE
Q 026122           73 CNSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-SFREQYDVA  150 (243)
Q Consensus        73 ~~~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-~~~~~fD~I  150 (243)
                      ++++.+||-+|+| .|..++.+++.. +++|+++|.+++.++.++    ++|...  ++..+-.++.... ...+.+|+|
T Consensus       162 ~~~g~~VlV~GaG~vG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~----~lGa~~--~~d~~~~~~~~~~~~~~~~~d~v  234 (339)
T 1rjw_A          162 AKPGEWVAIYGIGGLGHVAVQYAKAM-GLNVVAVDIGDEKLELAK----ELGADL--VVNPLKEDAAKFMKEKVGGVHAA  234 (339)
T ss_dssp             CCTTCEEEEECCSTTHHHHHHHHHHT-TCEEEEECSCHHHHHHHH----HTTCSE--EECTTTSCHHHHHHHHHSSEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHH----HCCCCE--EecCCCccHHHHHHHHhCCCCEE
Confidence            3458899999996 366666777665 569999999998776654    355532  2211111110000 000369999


Q ss_pred             EEcCcccHHHHHHHHccCcccCeEEEEE
Q 026122          151 VARAVAEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       151 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                      +.....  ...++.+.+.|+++|+++.+
T Consensus       235 id~~g~--~~~~~~~~~~l~~~G~~v~~  260 (339)
T 1rjw_A          235 VVTAVS--KPAFQSAYNSIRRGGACVLV  260 (339)
T ss_dssp             EESSCC--HHHHHHHHHHEEEEEEEEEC
T ss_pred             EECCCC--HHHHHHHHHHhhcCCEEEEe
Confidence            976432  34566777889999998764

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=95.78  E-value=0.0063  Score=52.44  Aligned_cols=96  Identities=22%  Similarity=0.150  Sum_probs=59.7

Q ss_pred             CCCeEEEEcCCC-ChHHHHHHHHCCCC-EEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcccccccc---CCcCCCCceE
Q 026122           75 SNLKLVDVGTGA-GLPGLVLAIACPDW-KVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK---DVSFREQYDV  149 (243)
Q Consensus        75 ~~~~VLDiGcG~-G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~---~~~~~~~fD~  149 (243)
                      ++.+||-+|+|. |..++.+|+.. ++ +|+++|.+++..+.++    ++|..  .++..+-.++..   .......+|+
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~-Ga~~Vi~~~~~~~~~~~~~----~~Ga~--~~~~~~~~~~~~~v~~~~~g~g~D~  239 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKAS-GAYPVIVSEPSDFRRELAK----KVGAD--YVINPFEEDVVKEVMDITDGNGVDV  239 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHT-TCCSEEEECSCHHHHHHHH----HHTCS--EEECTTTSCHHHHHHHHTTTSCEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHH----HhCCC--EEECCCCcCHHHHHHHHcCCCCCCE
Confidence            488999999953 55666777665 45 8999999998766654    34543  222221111110   0000136999


Q ss_pred             EEEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122          150 AVARAVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       150 I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      |+...-.  ...++.+.+.|+++|+++.+.
T Consensus       240 vid~~g~--~~~~~~~~~~l~~~G~iv~~g  267 (348)
T 2d8a_A          240 FLEFSGA--PKALEQGLQAVTPAGRVSLLG  267 (348)
T ss_dssp             EEECSCC--HHHHHHHHHHEEEEEEEEECC
T ss_pred             EEECCCC--HHHHHHHHHHHhcCCEEEEEc
Confidence            9976432  345567778899999987653

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=95.72  E-value=0.02  Score=48.52  Aligned_cols=89  Identities=11%  Similarity=0.155  Sum_probs=58.1

Q ss_pred             CCCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEE
Q 026122           73 CNSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        73 ~~~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      ++++.+||=+|+| .|..++.+|+.. +++|++++ +++..+.+++    +|..  .++. |.+++      .+.+|+|+
T Consensus       140 ~~~g~~VlV~GaG~vG~~a~qlak~~-Ga~Vi~~~-~~~~~~~~~~----lGa~--~v~~-d~~~v------~~g~Dvv~  204 (315)
T 3goh_A          140 LTKQREVLIVGFGAVNNLLTQMLNNA-GYVVDLVS-ASLSQALAAK----RGVR--HLYR-EPSQV------TQKYFAIF  204 (315)
T ss_dssp             CCSCCEEEEECCSHHHHHHHHHHHHH-TCEEEEEC-SSCCHHHHHH----HTEE--EEES-SGGGC------CSCEEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEE-ChhhHHHHHH----cCCC--EEEc-CHHHh------CCCccEEE
Confidence            3558999999996 366777778776 56999999 8877766644    5543  2222 32222      36799999


Q ss_pred             EcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122          152 ARAVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       152 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      -..-.  . .+..+.+.|+++|+++...
T Consensus       205 d~~g~--~-~~~~~~~~l~~~G~~v~~g  229 (315)
T 3goh_A          205 DAVNS--Q-NAAALVPSLKANGHIICIQ  229 (315)
T ss_dssp             CC----------TTGGGEEEEEEEEEEC
T ss_pred             ECCCc--h-hHHHHHHHhcCCCEEEEEe
Confidence            64322  1 1256788999999988763

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=95.71  E-value=0.018  Score=49.38  Aligned_cols=98  Identities=13%  Similarity=0.121  Sum_probs=61.1

Q ss_pred             CCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEc---cccccccCCcCCCCceE
Q 026122           74 NSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRG---RAETLGKDVSFREQYDV  149 (243)
Q Consensus        74 ~~~~~VLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~---d~~~~~~~~~~~~~fD~  149 (243)
                      .++.+||=.|+|. |..++.+|+......++++|.+++..+.++    ++|..  .++..   +..+..........+|+
T Consensus       159 ~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~----~lGa~--~~i~~~~~~~~~~~~~~~~~~g~d~  232 (346)
T 4a2c_A          159 CENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAK----SFGAM--QTFNSSEMSAPQMQSVLRELRFNQL  232 (346)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH----HTTCS--EEEETTTSCHHHHHHHHGGGCSSEE
T ss_pred             CCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHH----HcCCe--EEEeCCCCCHHHHHHhhcccCCccc
Confidence            4588999999874 445667777776667899999998766654    46654  22222   21111100000145888


Q ss_pred             EEEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122          150 AVARAVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       150 I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      |+-..-.  ...++.+.+.|++||.+++.-
T Consensus       233 v~d~~G~--~~~~~~~~~~l~~~G~~v~~g  260 (346)
T 4a2c_A          233 ILETAGV--PQTVELAVEIAGPHAQLALVG  260 (346)
T ss_dssp             EEECSCS--HHHHHHHHHHCCTTCEEEECC
T ss_pred             ccccccc--cchhhhhhheecCCeEEEEEe
Confidence            8865322  345666778899999987654

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=95.69  E-value=0.015  Score=49.24  Aligned_cols=73  Identities=10%  Similarity=0.003  Sum_probs=50.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCc-CCCCceEEEEc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWK-VTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-FREQYDVAVAR  153 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~-~~~~fD~I~~~  153 (243)
                      ..+++|+.||.|.+++.+....-... |.++|+++.+++..+.|.     .+..++.+|+.++..... ..+.+|+++..
T Consensus        16 ~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~-----~~~~~~~~DI~~i~~~~i~~~~~~Dll~gg   90 (295)
T 2qrv_A           16 PIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRH-----QGKIMYVGDVRSVTQKHIQEWGPFDLVIGG   90 (295)
T ss_dssp             CEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHT-----TTCEEEECCGGGCCHHHHHHTCCCSEEEEC
T ss_pred             CCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhC-----CCCceeCCChHHccHHHhcccCCcCEEEec
Confidence            56899999999998766665421222 599999998777666553     235688899988753210 01369999983

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=95.69  E-value=0.0088  Score=51.17  Aligned_cols=97  Identities=11%  Similarity=-0.010  Sum_probs=60.4

Q ss_pred             CCCCCeEEEEcC--CCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcccccccc---CCcCCCCc
Q 026122           73 CNSNLKLVDVGT--GAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK---DVSFREQY  147 (243)
Q Consensus        73 ~~~~~~VLDiGc--G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~---~~~~~~~f  147 (243)
                      ++++.+||-.|+  |.|...+.+++.. +++|+++|.+++.++.+++    ++.. . ++..+-.+...   .......+
T Consensus       143 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~-G~~Vi~~~~~~~~~~~~~~----~g~~-~-~~d~~~~~~~~~i~~~~~~~~~  215 (333)
T 1wly_A          143 VKPGDYVLIHAAAGGMGHIMVPWARHL-GATVIGTVSTEEKAETARK----LGCH-H-TINYSTQDFAEVVREITGGKGV  215 (333)
T ss_dssp             CCTTCEEEETTTTSTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH----HTCS-E-EEETTTSCHHHHHHHHHTTCCE
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----cCCC-E-EEECCCHHHHHHHHHHhCCCCC
Confidence            345889999995  4566666666665 5799999999987766643    4443 1 22211111100   00001469


Q ss_pred             eEEEEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122          148 DVAVARAVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       148 D~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      |+++.+.-.   ..++.+.+.|+++|+++..-
T Consensus       216 d~vi~~~g~---~~~~~~~~~l~~~G~iv~~g  244 (333)
T 1wly_A          216 DVVYDSIGK---DTLQKSLDCLRPRGMCAAYG  244 (333)
T ss_dssp             EEEEECSCT---TTHHHHHHTEEEEEEEEECC
T ss_pred             eEEEECCcH---HHHHHHHHhhccCCEEEEEe
Confidence            999976543   45667778999999987653

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=95.63  E-value=0.0051  Score=52.46  Aligned_cols=97  Identities=18%  Similarity=0.096  Sum_probs=59.4

Q ss_pred             CCCCCeEEEEcC--CCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccc---cCCcCCCCc
Q 026122           73 CNSNLKLVDVGT--GAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLG---KDVSFREQY  147 (243)
Q Consensus        73 ~~~~~~VLDiGc--G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---~~~~~~~~f  147 (243)
                      ++++.+||-.|+  |.|...+.+++.. +++|+++|.+++..+.+++    ++.. . ++..+-.+..   ........+
T Consensus       138 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~-G~~V~~~~~~~~~~~~~~~----~g~~-~-~~~~~~~~~~~~~~~~~~~~~~  210 (327)
T 1qor_A          138 IKPDEQFLFHAAAGGVGLIACQWAKAL-GAKLIGTVGTAQKAQSALK----AGAW-Q-VINYREEDLVERLKEITGGKKV  210 (327)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHH----HTCS-E-EEETTTSCHHHHHHHHTTTCCE
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH----cCCC-E-EEECCCccHHHHHHHHhCCCCc
Confidence            345889999994  3455555556554 5799999999887766654    3433 1 2221111110   000001369


Q ss_pred             eEEEEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122          148 DVAVARAVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       148 D~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      |+++.+.-   ...++.+.+.|+++|+++.+.
T Consensus       211 D~vi~~~g---~~~~~~~~~~l~~~G~iv~~g  239 (327)
T 1qor_A          211 RVVYDSVG---RDTWERSLDCLQRRGLMVSFG  239 (327)
T ss_dssp             EEEEECSC---GGGHHHHHHTEEEEEEEEECC
T ss_pred             eEEEECCc---hHHHHHHHHHhcCCCEEEEEe
Confidence            99998754   345677788999999987654

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=95.51  E-value=0.6  Score=45.89  Aligned_cols=119  Identities=12%  Similarity=0.079  Sum_probs=71.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccc------------cC-
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDW--KVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLG------------KD-  140 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~------------~~-  140 (243)
                      ..+++|+-||.|.+++-+.+.  +.  .|.++|+++.+++..+.|.     .+..++.+|+.++.            .. 
T Consensus       540 ~l~~iDLFaG~GGlslGl~~A--G~~~vv~avEid~~A~~ty~~N~-----p~~~~~~~DI~~l~~~~~~~di~~~~~~~  612 (1002)
T 3swr_A          540 KLRTLDVFSGCGGLSEGFHQA--GISDTLWAIEMWDPAAQAFRLNN-----PGSTVFTEDCNILLKLVMAGETTNSRGQR  612 (1002)
T ss_dssp             CEEEEEESCTTSHHHHHHHHH--TSEEEEEEECSSHHHHHHHHHHC-----TTSEEECSCHHHHHHHHHHTCSBCTTCCB
T ss_pred             CCeEEEeccCccHHHHHHHHC--CCCceEEEEECCHHHHHHHHHhC-----CCCccccccHHHHhhhccchhhhhhhhhh
Confidence            458999999999988777655  44  5789999998777665542     34567777764431            00 


Q ss_pred             CcCCCCceEEEEcC----cc-----------c-----HHHHHHHHccCcccCeEEEEEe--C---CCcHHHHHHHHHHHH
Q 026122          141 VSFREQYDVAVARA----VA-----------E-----MRILAEYCLPLVRVGGLFVAAK--G---HDPQEEVKNSERAVQ  195 (243)
Q Consensus       141 ~~~~~~fD~I~~~~----~~-----------~-----~~~~l~~~~~~LkpgG~l~~~~--~---~~~~~~~~~~~~~l~  195 (243)
                      ....+.+|+|+...    ++           +     +..+++ +...++|. .++++.  +   ......+..+.+.|.
T Consensus       613 lp~~~~vDll~GGpPCQ~FS~ag~~~~~~~~d~R~~L~~~~~r-iv~~~rPk-~~llENV~glls~~~~~~~~~i~~~L~  690 (1002)
T 3swr_A          613 LPQKGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFLS-YCDYYRPR-FFLLENVRNFVSFKRSMVLKLTLRCLV  690 (1002)
T ss_dssp             CCCTTTCSEEEECCCCTTCCSSSCCCHHHHHHHTTSHHHHHHH-HHHHHCCS-EEEEEEEGGGGTTGGGHHHHHHHHHHH
T ss_pred             cccCCCeeEEEEcCCCcchhhhCCCCCCcccchhhHHHHHHHH-HHHHhCCC-EEEEeccHHHhccCcchHHHHHHHHHH
Confidence            00124689999741    00           0     122232 33445674 333333  1   122345677888889


Q ss_pred             HhCCeeeE
Q 026122          196 LMGASLLQ  203 (243)
Q Consensus       196 ~~g~~~~~  203 (243)
                      ..|+.+..
T Consensus       691 ~lGY~v~~  698 (1002)
T 3swr_A          691 RMGYQCTF  698 (1002)
T ss_dssp             HHTCEEEE
T ss_pred             hcCCeEEE
Confidence            99997643

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=95.49  E-value=0.0046  Score=66.34  Aligned_cols=99  Identities=12%  Similarity=0.092  Sum_probs=49.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCC-----CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcccccc-ccCCcCCCCce
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACP-----DWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETL-GKDVSFREQYD  148 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~-----~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-~~~~~~~~~fD  148 (243)
                      +..+||+||.|+|..+..+.....     ..+.+..|+|+...+.+++..+.+.   ++.-.-|..+. ...   ..+||
T Consensus      1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~d---i~~~~~d~~~~~~~~---~~~yd 1313 (2512)
T 2vz8_A         1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLH---VTQGQWDPANPAPGS---LGKAD 1313 (2512)
T ss_dssp             SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHT---EEEECCCSSCCCC--------CC
T ss_pred             CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcc---cccccccccccccCC---CCcee
Confidence            356999999999976443333322     2378899999877766666655432   22211132221 001   25799


Q ss_pred             EEEEcCc----ccHHHHHHHHccCcccCeEEEEEe
Q 026122          149 VAVARAV----AEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       149 ~I~~~~~----~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      +|++..+    .+....++.+.++|||||++++..
T Consensus      1314 lvia~~vl~~t~~~~~~l~~~~~lL~p~G~l~~~e 1348 (2512)
T 2vz8_A         1314 LLVCNCALATLGDPAVAVGNMAATLKEGGFLLLHT 1348 (2512)
T ss_dssp             EEEEECC--------------------CCEEEEEE
T ss_pred             EEEEcccccccccHHHHHHHHHHhcCCCcEEEEEe
Confidence            9998643    367888999999999999988764

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=95.47  E-value=0.0086  Score=51.77  Aligned_cols=96  Identities=16%  Similarity=0.108  Sum_probs=60.0

Q ss_pred             CCCCCeEEEEcC--CCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccC--CcCCCCce
Q 026122           73 CNSNLKLVDVGT--GAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD--VSFREQYD  148 (243)
Q Consensus        73 ~~~~~~VLDiGc--G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~--~~~~~~fD  148 (243)
                      ++++.+||-+|+  |.|..++.+++.. +++|+++|.+++..+.+++    +|..  .++..+-.++...  ......+|
T Consensus       165 ~~~g~~VlV~Gg~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~----lGa~--~~~~~~~~~~~~~~~~~~~~g~D  237 (353)
T 4dup_A          165 LTEGESVLIHGGTSGIGTTAIQLARAF-GAEVYATAGSTGKCEACER----LGAK--RGINYRSEDFAAVIKAETGQGVD  237 (353)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH----HTCS--EEEETTTSCHHHHHHHHHSSCEE
T ss_pred             CCCCCEEEEEcCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHh----cCCC--EEEeCCchHHHHHHHHHhCCCce
Confidence            455889999853  2466667777665 5799999999987776654    4543  2222221111100  00024799


Q ss_pred             EEEEcCcccHHHHHHHHccCcccCeEEEEE
Q 026122          149 VAVARAVAEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       149 ~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                      +|+...-..   .++.+.+.|+++|+++.+
T Consensus       238 vvid~~g~~---~~~~~~~~l~~~G~iv~~  264 (353)
T 4dup_A          238 IILDMIGAA---YFERNIASLAKDGCLSII  264 (353)
T ss_dssp             EEEESCCGG---GHHHHHHTEEEEEEEEEC
T ss_pred             EEEECCCHH---HHHHHHHHhccCCEEEEE
Confidence            999765432   456677899999998764

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=95.39  E-value=0.025  Score=48.47  Aligned_cols=96  Identities=10%  Similarity=-0.015  Sum_probs=60.7

Q ss_pred             CCCCCeEEEEcC--CCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEc----cccccccCCcCCCC
Q 026122           73 CNSNLKLVDVGT--GAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRG----RAETLGKDVSFREQ  146 (243)
Q Consensus        73 ~~~~~~VLDiGc--G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~----d~~~~~~~~~~~~~  146 (243)
                      ++++.+||-.|+  |.|..++.+++.. +++|+++|.+++.++.+++   .+|...  ++..    ++.+.... ...+.
T Consensus       153 ~~~g~~vlI~Ga~g~iG~~~~~~a~~~-G~~V~~~~~~~~~~~~~~~---~~g~~~--~~d~~~~~~~~~~~~~-~~~~~  225 (345)
T 2j3h_A          153 PKEGETVYVSAASGAVGQLVGQLAKMM-GCYVVGSAGSKEKVDLLKT---KFGFDD--AFNYKEESDLTAALKR-CFPNG  225 (345)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH---TSCCSE--EEETTSCSCSHHHHHH-HCTTC
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH---HcCCce--EEecCCHHHHHHHHHH-HhCCC
Confidence            456889999997  3555666666665 5799999999876665542   345431  2211    11111000 00146


Q ss_pred             ceEEEEcCcccHHHHHHHHccCcccCeEEEEE
Q 026122          147 YDVAVARAVAEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       147 fD~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                      +|+|+.+.-.   ..++.+.+.|++||++++.
T Consensus       226 ~d~vi~~~g~---~~~~~~~~~l~~~G~~v~~  254 (345)
T 2j3h_A          226 IDIYFENVGG---KMLDAVLVNMNMHGRIAVC  254 (345)
T ss_dssp             EEEEEESSCH---HHHHHHHTTEEEEEEEEEC
T ss_pred             CcEEEECCCH---HHHHHHHHHHhcCCEEEEE
Confidence            9999986543   3677888999999998764

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=95.36  E-value=0.023  Score=48.92  Aligned_cols=93  Identities=14%  Similarity=0.092  Sum_probs=59.0

Q ss_pred             CCCeEEEEc-CC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEc--cccc-cccCCcCCCCceE
Q 026122           75 SNLKLVDVG-TG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRG--RAET-LGKDVSFREQYDV  149 (243)
Q Consensus        75 ~~~~VLDiG-cG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~--d~~~-~~~~~~~~~~fD~  149 (243)
                      ++.+||=+| +| .|..++.+++.. +++|+++|.+++.++.+++    +|...  ++..  +..+ +...  ....+|+
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~----lGa~~--vi~~~~~~~~~~~~~--~~~g~Dv  220 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAY-GLRVITTASRNETIEWTKK----MGADI--VLNHKESLLNQFKTQ--GIELVDY  220 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEECCSHHHHHHHHH----HTCSE--EECTTSCHHHHHHHH--TCCCEEE
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHh----cCCcE--EEECCccHHHHHHHh--CCCCccE
Confidence            488999884 44 466667777765 5699999999987776654    45432  2211  1111 1100  1246999


Q ss_pred             EEEcCcccHHHHHHHHccCcccCeEEEEE
Q 026122          150 AVARAVAEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       150 I~~~~~~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                      |+-..-.  ...++.+.+.|+++|+++..
T Consensus       221 v~d~~g~--~~~~~~~~~~l~~~G~iv~~  247 (346)
T 3fbg_A          221 VFCTFNT--DMYYDDMIQLVKPRGHIATI  247 (346)
T ss_dssp             EEESSCH--HHHHHHHHHHEEEEEEEEES
T ss_pred             EEECCCc--hHHHHHHHHHhccCCEEEEE
Confidence            9975332  44567777899999998654

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=95.34  E-value=0.013  Score=50.65  Aligned_cols=96  Identities=14%  Similarity=0.126  Sum_probs=59.2

Q ss_pred             CCCCCeEEEEcC--CCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcccccccc---CCcCCCCc
Q 026122           73 CNSNLKLVDVGT--GAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK---DVSFREQY  147 (243)
Q Consensus        73 ~~~~~~VLDiGc--G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~---~~~~~~~f  147 (243)
                      ++++.+||-.|+  |.|..++.+++.. +++|+++|.+++..+.+    +++|..  .++..+-.+...   .......+
T Consensus       168 ~~~g~~vlV~GasggiG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~----~~~ga~--~~~d~~~~~~~~~~~~~~~~~~~  240 (351)
T 1yb5_A          168 VKAGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIV----LQNGAH--EVFNHREVNYIDKIKKYVGEKGI  240 (351)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHH----HHTTCS--EEEETTSTTHHHHHHHHHCTTCE
T ss_pred             CCCcCEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCChhHHHHH----HHcCCC--EEEeCCCchHHHHHHHHcCCCCc
Confidence            455889999997  3455556666664 57999999999876654    345543  122211111100   00001369


Q ss_pred             eEEEEcCcccHHHHHHHHccCcccCeEEEEE
Q 026122          148 DVAVARAVAEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       148 D~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                      |+|+.+.-.   ..++.+.+.|+++|+++.+
T Consensus       241 D~vi~~~G~---~~~~~~~~~l~~~G~iv~~  268 (351)
T 1yb5_A          241 DIIIEMLAN---VNLSKDLSLLSHGGRVIVV  268 (351)
T ss_dssp             EEEEESCHH---HHHHHHHHHEEEEEEEEEC
T ss_pred             EEEEECCCh---HHHHHHHHhccCCCEEEEE
Confidence            999987543   2456778899999998764

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=95.33  E-value=0.015  Score=49.79  Aligned_cols=62  Identities=13%  Similarity=0.033  Sum_probs=46.5

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccc
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLG  138 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~  138 (243)
                      +++..|||-.||+|..++...+.  +.+.+|+|+++..++.+++++++.+.. ...++.|+.++.
T Consensus       251 ~~~~~VlDpF~GsGtt~~aa~~~--gr~~ig~e~~~~~~~~~~~r~~~~~~~-~~~~~~~~~~i~  312 (323)
T 1boo_A          251 EPDDLVVDIFGGSNTTGLVAERE--SRKWISFEMKPEYVAASAFRFLDNNIS-EEKITDIYNRIL  312 (323)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHGGGSCSCSC-HHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCCCHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHH
Confidence            45889999999999987555543  579999999999999998887765542 444555555543

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=95.28  E-value=0.22  Score=42.85  Aligned_cols=102  Identities=14%  Similarity=0.219  Sum_probs=70.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC---------------------CCCEEEEEccc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ---------------------LLNVQIVRGRA  134 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---------------------~~~v~~~~~d~  134 (243)
                      ...|+.+|||....+..+....++.+++-||. ++.++.-++.++..+                     -.+..++.+|+
T Consensus        98 ~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~DL  176 (334)
T 1rjd_A           98 KVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDL  176 (334)
T ss_dssp             SEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCT
T ss_pred             CcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecCC
Confidence            56899999999998888876666778888888 777777666666541                     14688999998


Q ss_pred             ccccc------CCcCCCCceEEEEcCcc------cHHHHHHHHccCcccCeEEEEEe
Q 026122          135 ETLGK------DVSFREQYDVAVARAVA------EMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       135 ~~~~~------~~~~~~~fD~I~~~~~~------~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      .+..-      .....+...++++.++.      ....+++.+.+.. |+|.+++..
T Consensus       177 ~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e  232 (334)
T 1rjd_A          177 NDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYD  232 (334)
T ss_dssp             TCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEE
T ss_pred             CCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEe
Confidence            87321      00012456788886632      4567777777766 777776443

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=95.23  E-value=0.17  Score=45.82  Aligned_cols=122  Identities=11%  Similarity=0.012  Sum_probs=72.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCC-EEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC-------------
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDW-KVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------------  141 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-------------  141 (243)
                      ..+++|+.||.|.+++.+...  +. .|.++|+++.+++..+.|...  ..+..++++|+.++....             
T Consensus        88 ~~~viDLFaG~GGlslG~~~a--G~~~v~avE~d~~A~~ty~~N~~~--~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~i  163 (482)
T 3me5_A           88 AFRFIDLFAGIGGIRRGFESI--GGQCVFTSEWNKHAVRTYKANHYC--DPATHHFNEDIRDITLSHQEGVSDEAAAEHI  163 (482)
T ss_dssp             SEEEEEESCTTSHHHHHHHTT--TEEEEEEECCCHHHHHHHHHHSCC--CTTTCEEESCTHHHHCTTCTTSCHHHHHHHH
T ss_pred             cceEEEecCCccHHHHHHHHC--CCEEEEEEeCCHHHHHHHHHhccc--CCCcceeccchhhhhhccccccchhhHHhhh
Confidence            458999999999887665543  44 489999999877666555311  123457788988764210             


Q ss_pred             -cCCCCceEEEEcC----cc------------------c-HHHHHHH---HccCcccCeEEEEEe--CC---CcHHHHHH
Q 026122          142 -SFREQYDVAVARA----VA------------------E-MRILAEY---CLPLVRVGGLFVAAK--GH---DPQEEVKN  189 (243)
Q Consensus       142 -~~~~~fD~I~~~~----~~------------------~-~~~~l~~---~~~~LkpgG~l~~~~--~~---~~~~~~~~  189 (243)
                       .....+|+++...    ++                  + ...++..   +.+.++|. .++++.  +-   .....+..
T Consensus       164 ~~~~~~~Dvl~gGpPCQ~FS~AG~~k~~~~g~~~G~~~D~R~~Lf~e~~riI~~~rPk-~fvlENV~gl~s~~~g~~f~~  242 (482)
T 3me5_A          164 RQHIPEHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFACDTQGTLFFDVVRIIDARRPA-MFVLENVKNLKSHDKGKTFRI  242 (482)
T ss_dssp             HHHSCCCSEEEEECCCCCC------------------CTTTTSHHHHHHHHHHHHCCS-EEEEEEETTTTTGGGGHHHHH
T ss_pred             hhcCCCCCEEEecCCCcchhhhCcccccccccccccccCccccHHHHHHHHHHHcCCc-EEEEeCcHHHhcccCCcHHHH
Confidence             0014689998731    00                  0 0012222   22345674 334433  21   22346777


Q ss_pred             HHHHHHHhCCeee
Q 026122          190 SERAVQLMGASLL  202 (243)
Q Consensus       190 ~~~~l~~~g~~~~  202 (243)
                      +.+.|+..|+.+.
T Consensus       243 i~~~L~~lGY~v~  255 (482)
T 3me5_A          243 IMQTLDELGYDVA  255 (482)
T ss_dssp             HHHHHHHTTEEET
T ss_pred             HHHHHhcCCcEEE
Confidence            8888999998774

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=95.23  E-value=0.053  Score=45.94  Aligned_cols=91  Identities=14%  Similarity=0.181  Sum_probs=59.6

Q ss_pred             eEEEEcC--CCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCc
Q 026122           78 KLVDVGT--GAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  155 (243)
Q Consensus        78 ~VLDiGc--G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~  155 (243)
                      +||=.|+  |.|..++.+|+.. +++|+++|.+++..+.+++    +|.+.+ +-..+......  ...+.+|+|+-..-
T Consensus       149 ~VlV~Ga~G~vG~~aiqla~~~-Ga~Vi~~~~~~~~~~~~~~----lGa~~v-i~~~~~~~~~~--~~~~~~d~v~d~~g  220 (324)
T 3nx4_A          149 EVVVTGASGGVGSTAVALLHKL-GYQVAAVSGRESTHGYLKS----LGANRI-LSRDEFAESRP--LEKQLWAGAIDTVG  220 (324)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCGGGHHHHHH----HTCSEE-EEGGGSSCCCS--SCCCCEEEEEESSC
T ss_pred             eEEEECCCcHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHh----cCCCEE-EecCCHHHHHh--hcCCCccEEEECCC
Confidence            4999987  3577778888876 5699999999987777654    564321 21122111111  11257999886543


Q ss_pred             ccHHHHHHHHccCcccCeEEEEEe
Q 026122          156 AEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       156 ~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      .   ..++.+.+.|+++|+++..-
T Consensus       221 ~---~~~~~~~~~l~~~G~iv~~G  241 (324)
T 3nx4_A          221 D---KVLAKVLAQMNYGGCVAACG  241 (324)
T ss_dssp             H---HHHHHHHHTEEEEEEEEECC
T ss_pred             c---HHHHHHHHHHhcCCEEEEEe
Confidence            2   26788889999999987653

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=95.17  E-value=0.014  Score=50.55  Aligned_cols=93  Identities=15%  Similarity=0.078  Sum_probs=56.1

Q ss_pred             CeEEEEcCCC-ChHH-HHHH-HHCCCCE-EEEEeCCHH---HHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceE
Q 026122           77 LKLVDVGTGA-GLPG-LVLA-IACPDWK-VTLLESMNK---RCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDV  149 (243)
Q Consensus        77 ~~VLDiGcG~-G~~~-~~la-~~~~~~~-v~~vD~s~~---~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~  149 (243)
                      .+||-+|+|. |..+ +.+| +.. +++ |+++|.+++   ..+.++    ++|.+.+   ..+-.++.......+.+|+
T Consensus       174 ~~VlV~GaG~vG~~a~iqla~k~~-Ga~~Vi~~~~~~~~~~~~~~~~----~lGa~~v---~~~~~~~~~i~~~~gg~Dv  245 (357)
T 2b5w_A          174 SSAFVLGNGSLGLLTLAMLKVDDK-GYENLYCLGRRDRPDPTIDIIE----ELDATYV---DSRQTPVEDVPDVYEQMDF  245 (357)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHCTT-CCCEEEEEECCCSSCHHHHHHH----HTTCEEE---ETTTSCGGGHHHHSCCEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHc-CCcEEEEEeCCcccHHHHHHHH----HcCCccc---CCCccCHHHHHHhCCCCCE
Confidence            8999999842 4455 5666 554 455 999999987   666654    4554322   2111111100000137999


Q ss_pred             EEEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122          150 AVARAVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       150 I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      |+-..-.  ...++.+.+.|+++|+++.+-
T Consensus       246 vid~~g~--~~~~~~~~~~l~~~G~iv~~g  273 (357)
T 2b5w_A          246 IYEATGF--PKHAIQSVQALAPNGVGALLG  273 (357)
T ss_dssp             EEECSCC--HHHHHHHHHHEEEEEEEEECC
T ss_pred             EEECCCC--hHHHHHHHHHHhcCCEEEEEe
Confidence            9965432  235667778999999987653

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=95.12  E-value=0.028  Score=48.11  Aligned_cols=48  Identities=8%  Similarity=-0.004  Sum_probs=37.8

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCH---HHHHHHHHHHHHcC
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMN---KRCVFLEHAVSLTQ  123 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~---~~~~~a~~~~~~~~  123 (243)
                      +++..|||--||+|..++...+.  +.+.+|+|+++   ..++.+++++++.+
T Consensus       241 ~~~~~vlDpF~GsGtt~~aa~~~--~r~~ig~e~~~~~~~~~~~~~~Rl~~~~  291 (319)
T 1eg2_A          241 HPGSTVLDFFAGSGVTARVAIQE--GRNSICTDAAPVFKEYYQKQLTFLQDDG  291 (319)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHH--TCEEEEEESSTHHHHHHHHHHHHC----
T ss_pred             CCCCEEEecCCCCCHHHHHHHHc--CCcEEEEECCccHHHHHHHHHHHHHHcc
Confidence            45889999999999988666655  57999999999   99999888876654

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=95.09  E-value=0.014  Score=50.53  Aligned_cols=97  Identities=9%  Similarity=-0.000  Sum_probs=59.0

Q ss_pred             CCCCCeEEEEcC--CCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccc---cCCcCCCCc
Q 026122           73 CNSNLKLVDVGT--GAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLG---KDVSFREQY  147 (243)
Q Consensus        73 ~~~~~~VLDiGc--G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---~~~~~~~~f  147 (243)
                      ++++.+||-.|+  |.|..++.+++.. +++|+++|.+++.++.++    .+|..  .++..+-.+..   ........+
T Consensus       160 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~----~~g~~--~~~~~~~~~~~~~~~~~~~~~~~  232 (354)
T 2j8z_A          160 VQAGDYVLIHAGLSGVGTAAIQLTRMA-GAIPLVTAGSQKKLQMAE----KLGAA--AGFNYKKEDFSEATLKFTKGAGV  232 (354)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHH----HHTCS--EEEETTTSCHHHHHHHHTTTSCE
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHH----HcCCc--EEEecCChHHHHHHHHHhcCCCc
Confidence            455889999985  3455555666654 579999999998777663    34443  12221111110   000001369


Q ss_pred             eEEEEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122          148 DVAVARAVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       148 D~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      |+++.+.-..   .++.+.+.|+++|+++.+-
T Consensus       233 d~vi~~~G~~---~~~~~~~~l~~~G~iv~~G  261 (354)
T 2j8z_A          233 NLILDCIGGS---YWEKNVNCLALDGRWVLYG  261 (354)
T ss_dssp             EEEEESSCGG---GHHHHHHHEEEEEEEEECC
T ss_pred             eEEEECCCch---HHHHHHHhccCCCEEEEEe
Confidence            9999876432   3556678899999987654

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=95.05  E-value=0.16  Score=37.56  Aligned_cols=110  Identities=16%  Similarity=0.020  Sum_probs=63.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCc-CCCCceEEEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-FREQYDVAVA  152 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~-~~~~fD~I~~  152 (243)
                      ..+|+=+|||  .+|..+++..  .+.+|+++|.+++.++.+++    .   .+.++.+|..+...... .-..+|+|++
T Consensus         7 ~~~viIiG~G--~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~----~---g~~~i~gd~~~~~~l~~a~i~~ad~vi~   77 (140)
T 3fwz_A            7 CNHALLVGYG--RVGSLLGEKLLASDIPLVVIETSRTRVDELRE----R---GVRAVLGNAANEEIMQLAHLECAKWLIL   77 (140)
T ss_dssp             CSCEEEECCS--HHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH----T---TCEEEESCTTSHHHHHHTTGGGCSEEEE
T ss_pred             CCCEEEECcC--HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH----c---CCCEEECCCCCHHHHHhcCcccCCEEEE
Confidence            4578888875  5555555432  46799999999987665543    2   35788888765321100 0146899887


Q ss_pred             cCcccH-HHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCe
Q 026122          153 RAVAEM-RILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGAS  200 (243)
Q Consensus       153 ~~~~~~-~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~  200 (243)
                      ....+. ...+-...+.+.|+..++.....  ...    .+.+++.|..
T Consensus        78 ~~~~~~~n~~~~~~a~~~~~~~~iiar~~~--~~~----~~~l~~~G~d  120 (140)
T 3fwz_A           78 TIPNGYEAGEIVASARAKNPDIEIIARAHY--DDE----VAYITERGAN  120 (140)
T ss_dssp             CCSCHHHHHHHHHHHHHHCSSSEEEEEESS--HHH----HHHHHHTTCS
T ss_pred             ECCChHHHHHHHHHHHHHCCCCeEEEEECC--HHH----HHHHHHCCCC
Confidence            543322 22233344556777776664432  111    2344567764

>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*

Probab=94.91  E-value=0.71  Score=44.07  Aligned_cols=43  Identities=16%  Similarity=0.158  Sum_probs=32.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCC----CC-EEEEEeCCHHHHHHHHHH
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACP----DW-KVTLLESMNKRCVFLEHA  118 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~----~~-~v~~vD~s~~~~~~a~~~  118 (243)
                      ..+|||+-||.|.++.-+.+...    .. -+.++|+++.+++.-+.|
T Consensus       212 ~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~N  259 (784)
T 4ft4_B          212 TATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYN  259 (784)
T ss_dssp             EEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHH
T ss_pred             CCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHH
Confidence            45799999999998766655420    12 578999999988877666

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=94.84  E-value=0.059  Score=45.39  Aligned_cols=79  Identities=14%  Similarity=0.095  Sum_probs=51.9

Q ss_pred             CCEEEEEccccccccCCcCCCCceEEEEcC----cc--------------------cHHHHHHHHccCcccCeEEEEEeC
Q 026122          125 LNVQIVRGRAETLGKDVSFREQYDVAVARA----VA--------------------EMRILAEYCLPLVRVGGLFVAAKG  180 (243)
Q Consensus       125 ~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~----~~--------------------~~~~~l~~~~~~LkpgG~l~~~~~  180 (243)
                      .+++++++|..+..... .+++||+|+++-    ..                    .+..+++++.++|||||.+++..+
T Consensus        20 ~~~~i~~gD~~~~l~~l-~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~   98 (297)
T 2zig_A           20 GVHRLHVGDAREVLASF-PEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVG   98 (297)
T ss_dssp             -CEEEEESCHHHHHTTS-CTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             cCCEEEECcHHHHHhhC-CCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEEC
Confidence            35789999998843211 126899999962    00                    134577889999999999998876


Q ss_pred             CCc------H-----HHHHHHHHHHHHhCCeeeEE
Q 026122          181 HDP------Q-----EEVKNSERAVQLMGASLLQL  204 (243)
Q Consensus       181 ~~~------~-----~~~~~~~~~l~~~g~~~~~~  204 (243)
                      ...      .     .....+...+++.||.....
T Consensus        99 d~~~~~~~~g~~~~~~~~~~l~~~~~~~Gf~~~~~  133 (297)
T 2zig_A           99 DVAVARRRFGRHLVFPLHADIQVRCRKLGFDNLNP  133 (297)
T ss_dssp             CEEEECC----EEEECHHHHHHHHHHHTTCEEEEE
T ss_pred             CCccccccCCcccccccHHHHHHHHHHcCCeeecc
Confidence            322      1     01134556677889876553

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=94.83  E-value=0.023  Score=48.82  Aligned_cols=93  Identities=11%  Similarity=0.111  Sum_probs=59.2

Q ss_pred             CCCCCeEEEEcC-C-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcccccccc---CCcCCCCc
Q 026122           73 CNSNLKLVDVGT-G-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK---DVSFREQY  147 (243)
Q Consensus        73 ~~~~~~VLDiGc-G-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~---~~~~~~~f  147 (243)
                      ++++.+||-+|+ | .|..++.+++.. +++|+++ .+++.++.++    ++|...   +. +-.++..   .......+
T Consensus       148 ~~~g~~VlV~Ga~g~iG~~~~q~a~~~-Ga~Vi~~-~~~~~~~~~~----~lGa~~---i~-~~~~~~~~~~~~~~~~g~  217 (343)
T 3gaz_A          148 VQDGQTVLIQGGGGGVGHVAIQIALAR-GARVFAT-ARGSDLEYVR----DLGATP---ID-ASREPEDYAAEHTAGQGF  217 (343)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEE-ECHHHHHHHH----HHTSEE---EE-TTSCHHHHHHHHHTTSCE
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHC-CCEEEEE-eCHHHHHHHH----HcCCCE---ec-cCCCHHHHHHHHhcCCCc
Confidence            455899999994 3 466777777765 5799999 8887666554    355431   22 2222110   00011469


Q ss_pred             eEEEEcCcccHHHHHHHHccCcccCeEEEEE
Q 026122          148 DVAVARAVAEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       148 D~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                      |+|+-..-.   ..++.+.+.|+++|+++..
T Consensus       218 D~vid~~g~---~~~~~~~~~l~~~G~iv~~  245 (343)
T 3gaz_A          218 DLVYDTLGG---PVLDASFSAVKRFGHVVSC  245 (343)
T ss_dssp             EEEEESSCT---HHHHHHHHHEEEEEEEEES
T ss_pred             eEEEECCCc---HHHHHHHHHHhcCCeEEEE
Confidence            999975432   4567777899999998764

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=94.63  E-value=0.032  Score=47.49  Aligned_cols=93  Identities=14%  Similarity=0.160  Sum_probs=56.9

Q ss_pred             CC-eEEEEcC--CCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccc-cccccCCcCCCCceEEE
Q 026122           76 NL-KLVDVGT--GAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRA-ETLGKDVSFREQYDVAV  151 (243)
Q Consensus        76 ~~-~VLDiGc--G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~-~~~~~~~~~~~~fD~I~  151 (243)
                      +. +||-+|+  |.|..++.+|+.. +++|++++.+++..+.++    ++|...+ +-..+. .+.... ...+.+|+|+
T Consensus       149 g~~~VlV~Ga~G~vG~~~~q~a~~~-Ga~vi~~~~~~~~~~~~~----~lGa~~~-i~~~~~~~~~~~~-~~~~~~d~vi  221 (328)
T 1xa0_A          149 ERGPVLVTGATGGVGSLAVSMLAKR-GYTVEASTGKAAEHDYLR----VLGAKEV-LAREDVMAERIRP-LDKQRWAAAV  221 (328)
T ss_dssp             GGCCEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCTTCHHHHH----HTTCSEE-EECC----------CCSCCEEEEE
T ss_pred             CCceEEEecCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHH----HcCCcEE-EecCCcHHHHHHH-hcCCcccEEE
Confidence            54 8999997  4566777777776 578999999987666654    4565321 111111 111000 0114699999


Q ss_pred             EcCcccHHHHHHHHccCcccCeEEEEE
Q 026122          152 ARAVAEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       152 ~~~~~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                      -..-.   ..++.+.+.++++|+++..
T Consensus       222 d~~g~---~~~~~~~~~l~~~G~~v~~  245 (328)
T 1xa0_A          222 DPVGG---RTLATVLSRMRYGGAVAVS  245 (328)
T ss_dssp             ECSTT---TTHHHHHHTEEEEEEEEEC
T ss_pred             ECCcH---HHHHHHHHhhccCCEEEEE
Confidence            75432   2456677899999998764

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=94.59  E-value=0.023  Score=48.81  Aligned_cols=93  Identities=17%  Similarity=0.108  Sum_probs=57.6

Q ss_pred             CCCeEEEEcCCC-ChHHHHHHHHCCCC-EEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcccccccc---CCcCCCCceE
Q 026122           75 SNLKLVDVGTGA-GLPGLVLAIACPDW-KVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK---DVSFREQYDV  149 (243)
Q Consensus        75 ~~~~VLDiGcG~-G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~---~~~~~~~fD~  149 (243)
                      ++.+||-+|+|. |..++.+|+.. ++ +|+++|.+++.++.+++.     ..  .++..+-.++..   ... ...+|+
T Consensus       164 ~g~~VlV~GaG~vG~~~~q~a~~~-Ga~~Vi~~~~~~~~~~~~~~l-----a~--~v~~~~~~~~~~~~~~~~-~~g~D~  234 (343)
T 2dq4_A          164 SGKSVLITGAGPIGLMAAMVVRAS-GAGPILVSDPNPYRLAFARPY-----AD--RLVNPLEEDLLEVVRRVT-GSGVEV  234 (343)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHT-TCCSEEEECSCHHHHGGGTTT-----CS--EEECTTTSCHHHHHHHHH-SSCEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHh-----HH--hccCcCccCHHHHHHHhc-CCCCCE
Confidence            488999999853 55666777765 55 899999998876655432     11  122211111100   000 146999


Q ss_pred             EEEcCcccHHHHHHHHccCcccCeEEEEE
Q 026122          150 AVARAVAEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       150 I~~~~~~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                      |+-..-.  ...++.+.+.|+++|+++.+
T Consensus       235 vid~~g~--~~~~~~~~~~l~~~G~iv~~  261 (343)
T 2dq4_A          235 LLEFSGN--EAAIHQGLMALIPGGEARIL  261 (343)
T ss_dssp             EEECSCC--HHHHHHHHHHEEEEEEEEEC
T ss_pred             EEECCCC--HHHHHHHHHHHhcCCEEEEE
Confidence            9975432  24456777889999997764

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=94.43  E-value=0.032  Score=48.07  Aligned_cols=97  Identities=9%  Similarity=0.124  Sum_probs=59.1

Q ss_pred             CCCC--CeEEEEcCC--CChHHHHHHHHCCCC-EEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcccccccc--CCcCCC
Q 026122           73 CNSN--LKLVDVGTG--AGLPGLVLAIACPDW-KVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK--DVSFRE  145 (243)
Q Consensus        73 ~~~~--~~VLDiGcG--~G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--~~~~~~  145 (243)
                      ++++  .+||-.|++  .|..++.+++.. ++ +|+++|.+++..+.+++   .+|..  .++..+-.+...  .....+
T Consensus       156 ~~~g~~~~vlI~GasggiG~~~~~~a~~~-Ga~~Vi~~~~~~~~~~~~~~---~~g~~--~~~d~~~~~~~~~~~~~~~~  229 (357)
T 2zb4_A          156 ITAGSNKTMVVSGAAGACGSVAGQIGHFL-GCSRVVGICGTHEKCILLTS---ELGFD--AAINYKKDNVAEQLRESCPA  229 (357)
T ss_dssp             CCTTSCCEEEESSTTBHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHH---TSCCS--EEEETTTSCHHHHHHHHCTT
T ss_pred             CCCCCccEEEEECCCcHHHHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHH---HcCCc--eEEecCchHHHHHHHHhcCC
Confidence            3457  899999983  444555566554 56 99999999876555432   24543  122211111100  000013


Q ss_pred             CceEEEEcCcccHHHHHHHHccCcccCeEEEEE
Q 026122          146 QYDVAVARAVAEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       146 ~fD~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                      .+|+++.+.-.   ..++.+.+.|+++|+++.+
T Consensus       230 ~~d~vi~~~G~---~~~~~~~~~l~~~G~iv~~  259 (357)
T 2zb4_A          230 GVDVYFDNVGG---NISDTVISQMNENSHIILC  259 (357)
T ss_dssp             CEEEEEESCCH---HHHHHHHHTEEEEEEEEEC
T ss_pred             CCCEEEECCCH---HHHHHHHHHhccCcEEEEE
Confidence            69999987543   5677888899999998764

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=94.32  E-value=0.046  Score=46.49  Aligned_cols=93  Identities=13%  Similarity=0.125  Sum_probs=58.7

Q ss_pred             CC-eEEEEcC--CCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEc-cc-cccccCCcCCCCceEE
Q 026122           76 NL-KLVDVGT--GAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRG-RA-ETLGKDVSFREQYDVA  150 (243)
Q Consensus        76 ~~-~VLDiGc--G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~-d~-~~~~~~~~~~~~fD~I  150 (243)
                      +. +||=+|+  |.|..++.+|+.. +++|++++.+++..+.++    ++|...  ++.. +. .+.... .....+|+|
T Consensus       150 g~~~VlV~Ga~G~vG~~~~q~a~~~-Ga~vi~~~~~~~~~~~~~----~lGa~~--v~~~~~~~~~~~~~-~~~~~~d~v  221 (330)
T 1tt7_A          150 EKGSVLVTGATGGVGGIAVSMLNKR-GYDVVASTGNREAADYLK----QLGASE--VISREDVYDGTLKA-LSKQQWQGA  221 (330)
T ss_dssp             GGCCEEEESTTSHHHHHHHHHHHHH-TCCEEEEESSSSTHHHHH----HHTCSE--EEEHHHHCSSCCCS-SCCCCEEEE
T ss_pred             CCceEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHH----HcCCcE--EEECCCchHHHHHH-hhcCCccEE
Confidence            54 8999997  3566667777665 568999999987666654    355432  2221 11 111000 012469999


Q ss_pred             EEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122          151 VARAVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       151 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      +-..-.   ..++.+.+.++++|+++..-
T Consensus       222 id~~g~---~~~~~~~~~l~~~G~iv~~G  247 (330)
T 1tt7_A          222 VDPVGG---KQLASLLSKIQYGGSVAVSG  247 (330)
T ss_dssp             EESCCT---HHHHHHHTTEEEEEEEEECC
T ss_pred             EECCcH---HHHHHHHHhhcCCCEEEEEe
Confidence            875433   25678889999999987653

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=94.26  E-value=0.1  Score=44.58  Aligned_cols=77  Identities=16%  Similarity=0.108  Sum_probs=53.2

Q ss_pred             CEEEEEccccccccCCcCCCCceEEEEcC---c---------------ccHHHHHHHHccCcccCeEEEEEeCCCc----
Q 026122          126 NVQIVRGRAETLGKDVSFREQYDVAVARA---V---------------AEMRILAEYCLPLVRVGGLFVAAKGHDP----  183 (243)
Q Consensus       126 ~v~~~~~d~~~~~~~~~~~~~fD~I~~~~---~---------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~----  183 (243)
                      +.+++++|..+..... .++++|+|++..   .               ..+...++.+.++|+|||.+++..+...    
T Consensus        14 ~~~ii~gD~~~~l~~l-~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~~~~g~   92 (323)
T 1boo_A           14 NGSMYIGDSLELLESF-PEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGAYMKGV   92 (323)
T ss_dssp             SEEEEESCHHHHGGGS-CSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCCEETTE
T ss_pred             CceEEeCcHHHHHhhC-CCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCEecCCC
Confidence            4789999987632211 136899999963   1               1367888899999999999999876441    


Q ss_pred             ----HHHHHHHHHHHHHhCCeeeE
Q 026122          184 ----QEEVKNSERAVQLMGASLLQ  203 (243)
Q Consensus       184 ----~~~~~~~~~~l~~~g~~~~~  203 (243)
                          ...+..+.+.++..|+....
T Consensus        93 ~~~~~~~~~~i~~~~~~~Gf~~~~  116 (323)
T 1boo_A           93 PARSIYNFRVLIRMIDEVGFFLAE  116 (323)
T ss_dssp             EEECCHHHHHHHHHHHTTCCEEEE
T ss_pred             cccccchHHHHHHHHHhCCCEEEE
Confidence                11344455667789987654

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=94.26  E-value=0.19  Score=40.88  Aligned_cols=103  Identities=18%  Similarity=0.101  Sum_probs=65.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC---CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcC-------CC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC---PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSF-------RE  145 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~---~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~-------~~  145 (243)
                      +++||=.| |+|.+|..+++.+   .+++|++++.++...+.+.+.++..+ .++.++.+|+.+.......       .+
T Consensus         4 ~k~vlITG-asggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~g   81 (276)
T 1wma_A            4 IHVALVTG-GNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG-LSPRFHQLDIDDLQSIRALRDFLRKEYG   81 (276)
T ss_dssp             CCEEEESS-CSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT-CCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeC-CCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcC-CeeEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            56778777 5566776666542   46899999999877665555555544 2478889998764211000       03


Q ss_pred             CceEEEEcCc------------cc-----------HHHHHHHHccCcccCeEEEEEeC
Q 026122          146 QYDVAVARAV------------AE-----------MRILAEYCLPLVRVGGLFVAAKG  180 (243)
Q Consensus       146 ~fD~I~~~~~------------~~-----------~~~~l~~~~~~LkpgG~l~~~~~  180 (243)
                      ..|+|+.++.            .+           ...+++.+.+.++++|+++++.+
T Consensus        82 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~sS  139 (276)
T 1wma_A           82 GLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSS  139 (276)
T ss_dssp             SEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             CCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEECC
Confidence            6899998641            11           12355667777777888877654

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=94.24  E-value=0.092  Score=46.92  Aligned_cols=95  Identities=15%  Similarity=0.088  Sum_probs=61.2

Q ss_pred             CCCCCeEEEEcC-C-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccc--------------
Q 026122           73 CNSNLKLVDVGT-G-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAET--------------  136 (243)
Q Consensus        73 ~~~~~~VLDiGc-G-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~--------------  136 (243)
                      ++++.+||=+|+ | .|..++.+|+.. +++|++++.+++.++.++    ++|...  ++...-.+              
T Consensus       226 ~~~g~~VlV~GasG~vG~~avqlak~~-Ga~vi~~~~~~~~~~~~~----~lGa~~--vi~~~~~d~~~~~~~~~~~~~~  298 (456)
T 3krt_A          226 MKQGDNVLIWGASGGLGSYATQFALAG-GANPICVVSSPQKAEICR----AMGAEA--IIDRNAEGYRFWKDENTQDPKE  298 (456)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHH----HHTCCE--EEETTTTTCCSEEETTEECHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHc-CCeEEEEECCHHHHHHHH----hhCCcE--EEecCcCcccccccccccchHH
Confidence            456899999997 3 566777777775 679999999998777664    355432  22211111              


Q ss_pred             -------cccCCcCCCCceEEEEcCcccHHHHHHHHccCcccCeEEEEE
Q 026122          137 -------LGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       137 -------~~~~~~~~~~fD~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                             +... .....+|+|+-..-.   ..++.+.+.|++||+++.+
T Consensus       299 ~~~~~~~i~~~-t~g~g~Dvvid~~G~---~~~~~~~~~l~~~G~iv~~  343 (456)
T 3krt_A          299 WKRFGKRIREL-TGGEDIDIVFEHPGR---ETFGASVFVTRKGGTITTC  343 (456)
T ss_dssp             HHHHHHHHHHH-HTSCCEEEEEECSCH---HHHHHHHHHEEEEEEEEES
T ss_pred             HHHHHHHHHHH-hCCCCCcEEEEcCCc---hhHHHHHHHhhCCcEEEEE
Confidence                   1000 001479999875432   4567778899999998764

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=94.05  E-value=0.038  Score=47.75  Aligned_cols=94  Identities=18%  Similarity=0.212  Sum_probs=56.4

Q ss_pred             CCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122           75 SNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        75 ~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      ++.+||=+|+| .|..++.+|+.. +++|+++|.+++..+.++   +++|.+.+ +-..+...+..   ..+.+|+|+-.
T Consensus       180 ~g~~VlV~GaG~vG~~a~qlak~~-Ga~Vi~~~~~~~~~~~~~---~~lGa~~v-i~~~~~~~~~~---~~~g~D~vid~  251 (357)
T 2cf5_A          180 PGLRGGILGLGGVGHMGVKIAKAM-GHHVTVISSSNKKREEAL---QDLGADDY-VIGSDQAKMSE---LADSLDYVIDT  251 (357)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSTTHHHHHH---TTSCCSCE-EETTCHHHHHH---STTTEEEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHH---HHcCCcee-eccccHHHHHH---hcCCCCEEEEC
Confidence            58899999975 345556666665 569999999987555443   24565432 11112111111   12469999975


Q ss_pred             CcccHHHHHHHHccCcccCeEEEEE
Q 026122          154 AVAEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       154 ~~~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                      .-..  ..++.+.+.|+++|+++..
T Consensus       252 ~g~~--~~~~~~~~~l~~~G~iv~~  274 (357)
T 2cf5_A          252 VPVH--HALEPYLSLLKLDGKLILM  274 (357)
T ss_dssp             CCSC--CCSHHHHTTEEEEEEEEEC
T ss_pred             CCCh--HHHHHHHHHhccCCEEEEe
Confidence            4221  1234556799999998765

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=93.90  E-value=0.041  Score=47.67  Aligned_cols=92  Identities=17%  Similarity=0.152  Sum_probs=55.8

Q ss_pred             CCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCCH---HHHHHHHHHHHHcCCCCEEEEEccccccccCC-cCCCCceEE
Q 026122           76 NLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMN---KRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-SFREQYDVA  150 (243)
Q Consensus        76 ~~~VLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~---~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-~~~~~fD~I  150 (243)
                      +.+||-+|+|. |..++.+++.. +++|+++|.++   +..+.++    ++|...+   ..+  ++.... .....+|+|
T Consensus       181 g~~VlV~GaG~vG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~~~----~~ga~~v---~~~--~~~~~~~~~~~~~d~v  250 (366)
T 2cdc_A          181 CRKVLVVGTGPIGVLFTLLFRTY-GLEVWMANRREPTEVEQTVIE----ETKTNYY---NSS--NGYDKLKDSVGKFDVI  250 (366)
T ss_dssp             TCEEEEESCHHHHHHHHHHHHHH-TCEEEEEESSCCCHHHHHHHH----HHTCEEE---ECT--TCSHHHHHHHCCEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC-CCEEEEEeCCccchHHHHHHH----HhCCcee---chH--HHHHHHHHhCCCCCEE
Confidence            78999999842 44445555554 46999999997   7665554    3454322   111  111000 001469999


Q ss_pred             EEcCcccHHHHH-HHHccCcccCeEEEEEe
Q 026122          151 VARAVAEMRILA-EYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       151 ~~~~~~~~~~~l-~~~~~~LkpgG~l~~~~  179 (243)
                      +...-..  ..+ +.+.+.|+++|+++.+.
T Consensus       251 id~~g~~--~~~~~~~~~~l~~~G~iv~~g  278 (366)
T 2cdc_A          251 IDATGAD--VNILGNVIPLLGRNGVLGLFG  278 (366)
T ss_dssp             EECCCCC--THHHHHHGGGEEEEEEEEECS
T ss_pred             EECCCCh--HHHHHHHHHHHhcCCEEEEEe
Confidence            9765331  234 77888999999987653

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=93.88  E-value=0.53  Score=38.44  Aligned_cols=104  Identities=14%  Similarity=0.042  Sum_probs=67.4

Q ss_pred             CCeEEEEcCCC--ChHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccC-------CcCC
Q 026122           76 NLKLVDVGTGA--GLPGLVLAIA--CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD-------VSFR  144 (243)
Q Consensus        76 ~~~VLDiGcG~--G~~~~~la~~--~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-------~~~~  144 (243)
                      ++++|=-|+++  |. +..+|+.  ..+++|+.+|.+++..+.+.+.++..+-.++.++.+|+.+...-       ...-
T Consensus         6 gK~alVTGaa~~~GI-G~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   84 (256)
T 4fs3_A            6 NKTYVIMGIANKRSI-AFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIGKDV   84 (256)
T ss_dssp             TCEEEEECCCSTTCH-HHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCchH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            78899999654  53 3344432  24789999999998888777777776655688889988763210       0001


Q ss_pred             CCceEEEEcCc-----------c--cHH--------------HHHHHHccCcccCeEEEEEeC
Q 026122          145 EQYDVAVARAV-----------A--EMR--------------ILAEYCLPLVRVGGLFVAAKG  180 (243)
Q Consensus       145 ~~fD~I~~~~~-----------~--~~~--------------~~l~~~~~~LkpgG~l~~~~~  180 (243)
                      ++.|+++.|+-           .  ..+              ...+.+...++.+|.++.+.+
T Consensus        85 G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnisS  147 (256)
T 4fs3_A           85 GNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTY  147 (256)
T ss_dssp             CCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEEC
T ss_pred             CCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEec
Confidence            57899998631           0  111              122345567788999887663

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=93.74  E-value=0.058  Score=46.75  Aligned_cols=93  Identities=15%  Similarity=0.052  Sum_probs=54.9

Q ss_pred             CCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEc-cccccccCCcCCCCceEEEE
Q 026122           75 SNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRG-RAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        75 ~~~~VLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~fD~I~~  152 (243)
                      ++.+||=+|+|. |..++.+|+.. +++|+++|.+++..+.++   +++|..  .++.. +...+..   ..+.+|+|+.
T Consensus       187 ~g~~VlV~GaG~vG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~---~~lGa~--~v~~~~~~~~~~~---~~~~~D~vid  257 (366)
T 1yqd_A          187 PGKHIGIVGLGGLGHVAVKFAKAF-GSKVTVISTSPSKKEEAL---KNFGAD--SFLVSRDQEQMQA---AAGTLDGIID  257 (366)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCGGGHHHHH---HTSCCS--EEEETTCHHHHHH---TTTCEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHH---HhcCCc--eEEeccCHHHHHH---hhCCCCEEEE
Confidence            588999999752 44556666665 579999999987655443   245543  22221 1111111   1146999997


Q ss_pred             cCcccHHHHHHHHccCcccCeEEEEE
Q 026122          153 RAVAEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       153 ~~~~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                      ..-..  ..++.+.+.|+++|+++.+
T Consensus       258 ~~g~~--~~~~~~~~~l~~~G~iv~~  281 (366)
T 1yqd_A          258 TVSAV--HPLLPLFGLLKSHGKLILV  281 (366)
T ss_dssp             CCSSC--CCSHHHHHHEEEEEEEEEC
T ss_pred             CCCcH--HHHHHHHHHHhcCCEEEEE
Confidence            54221  0123445678899997764

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=93.67  E-value=0.26  Score=41.64  Aligned_cols=92  Identities=13%  Similarity=0.063  Sum_probs=58.1

Q ss_pred             CCCCCeEEEEc-CC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccc-cccCCcCCCCceE
Q 026122           73 CNSNLKLVDVG-TG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAET-LGKDVSFREQYDV  149 (243)
Q Consensus        73 ~~~~~~VLDiG-cG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~~~~~~~~~~fD~  149 (243)
                      ++++.+||=+| +| .|..++.+|+.. +++|++++. ++..+.    ++++|...  ++..+-.+ +...   -..+|+
T Consensus       150 ~~~g~~vlV~Ga~G~vG~~a~q~a~~~-Ga~vi~~~~-~~~~~~----~~~lGa~~--~i~~~~~~~~~~~---~~g~D~  218 (321)
T 3tqh_A          150 VKQGDVVLIHAGAGGVGHLAIQLAKQK-GTTVITTAS-KRNHAF----LKALGAEQ--CINYHEEDFLLAI---STPVDA  218 (321)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEEC-HHHHHH----HHHHTCSE--EEETTTSCHHHHC---CSCEEE
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHc-CCEEEEEec-cchHHH----HHHcCCCE--EEeCCCcchhhhh---ccCCCE
Confidence            34588999886 54 577777888776 569999984 443443    44567642  33322222 2211   146999


Q ss_pred             EEEcCcccHHHHHHHHccCcccCeEEEEE
Q 026122          150 AVARAVAEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       150 I~~~~~~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                      |+-..-.  ..+ +.+.+.|+++|+++..
T Consensus       219 v~d~~g~--~~~-~~~~~~l~~~G~iv~~  244 (321)
T 3tqh_A          219 VIDLVGG--DVG-IQSIDCLKETGCIVSV  244 (321)
T ss_dssp             EEESSCH--HHH-HHHGGGEEEEEEEEEC
T ss_pred             EEECCCc--HHH-HHHHHhccCCCEEEEe
Confidence            9975432  223 7788999999998765

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=93.47  E-value=0.27  Score=42.88  Aligned_cols=93  Identities=12%  Similarity=0.050  Sum_probs=66.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC--EEEEEccccccccCCcCCCCceEEEEc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN--VQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~--v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      +.+||.++.+.|.++..++..    .++.+.=|--....++.|++.+++..  +++... .++.      ...||+|+..
T Consensus        39 ~~~~~~~~d~~gal~~~~~~~----~~~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~~~-~~~~------~~~~~~v~~~  107 (375)
T 4dcm_A           39 RGPVLILNDAFGALSCALAEH----KPYSIGDSYISELATRENLRLNGIDESSVKFLDS-TADY------PQQPGVVLIK  107 (375)
T ss_dssp             CSCEEEECCSSSHHHHHTGGG----CCEEEESCHHHHHHHHHHHHHTTCCGGGSEEEET-TSCC------CSSCSEEEEE
T ss_pred             CCCEEEECCCCCHHHHhhccC----CceEEEhHHHHHHHHHHHHHHcCCCccceEeccc-cccc------ccCCCEEEEE
Confidence            568999999999998777633    44566445544456788899999863  665432 2221      2679999985


Q ss_pred             C---cccHHHHHHHHccCcccCeEEEEEe
Q 026122          154 A---VAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       154 ~---~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      -   .......+..+...|++|+.+++..
T Consensus       108 lpk~~~~l~~~L~~l~~~l~~~~~i~~~g  136 (375)
T 4dcm_A          108 VPKTLALLEQQLRALRKVVTSDTRIIAGA  136 (375)
T ss_dssp             CCSCHHHHHHHHHHHHTTCCTTSEEEEEE
T ss_pred             cCCCHHHHHHHHHHHHhhCCCCCEEEEEe
Confidence            4   4456778888999999999986644

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=93.26  E-value=0.19  Score=43.29  Aligned_cols=98  Identities=14%  Similarity=0.045  Sum_probs=57.0

Q ss_pred             CCCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcccc--c-cccCCcCCCCce
Q 026122           73 CNSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAE--T-LGKDVSFREQYD  148 (243)
Q Consensus        73 ~~~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~--~-~~~~~~~~~~fD  148 (243)
                      ++++.+||=+|+| .|..++.+|+..++++|+++|.+++..+.++    ++|.+.  ++..+-.  + +... .....+|
T Consensus       184 ~~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~~~~~~~~~~----~lGa~~--vi~~~~~~~~~v~~~-~~g~g~D  256 (359)
T 1h2b_A          184 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAE----RLGADH--VVDARRDPVKQVMEL-TRGRGVN  256 (359)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHH----HTTCSE--EEETTSCHHHHHHHH-TTTCCEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH----HhCCCE--EEeccchHHHHHHHH-hCCCCCc
Confidence            3458899999985 2334556666653579999999998766654    456532  2222111  1 1000 0013699


Q ss_pred             EEEEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122          149 VAVARAVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       149 ~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      +|+-..-......++.+.+.  ++|+++..-
T Consensus       257 vvid~~G~~~~~~~~~~~~~--~~G~~v~~g  285 (359)
T 1h2b_A          257 VAMDFVGSQATVDYTPYLLG--RMGRLIIVG  285 (359)
T ss_dssp             EEEESSCCHHHHHHGGGGEE--EEEEEEECC
T ss_pred             EEEECCCCchHHHHHHHhhc--CCCEEEEEe
Confidence            99975432111145566666  999977653

>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}

Probab=93.16  E-value=1.3  Score=38.99  Aligned_cols=45  Identities=16%  Similarity=-0.011  Sum_probs=33.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCC-CCE----EEEEeCCHHHHHHHHHHHH
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACP-DWK----VTLLESMNKRCVFLEHAVS  120 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~-~~~----v~~vD~s~~~~~~a~~~~~  120 (243)
                      ..+|+|+.||.|..+..+.+... ..-    |.++|+++.+++.-+.+..
T Consensus        10 ~lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~   59 (403)
T 4dkj_A           10 VIKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHS   59 (403)
T ss_dssp             EEEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHC
T ss_pred             cceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcC
Confidence            35899999999998777665421 123    8889999998877666653

>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*

Probab=93.13  E-value=2.8  Score=42.45  Aligned_cols=119  Identities=12%  Similarity=0.075  Sum_probs=70.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccc------------cC-
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDW--KVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLG------------KD-  140 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~------------~~-  140 (243)
                      ..+++|+.||.|.+++-+.+.  +.  .|.++|+++.+++..+.|.     .+..++++|+.++.            .. 
T Consensus       851 ~l~viDLFsG~GGlslGfe~A--G~~~vv~avEid~~A~~ty~~N~-----p~~~~~~~DI~~l~~~~~~gdi~~~~~~~  923 (1330)
T 3av4_A          851 KLRTLDVFSGCGGLSEGFHQA--GISETLWAIEMWDPAAQAFRLNN-----PGTTVFTEDCNVLLKLVMAGEVTNSLGQR  923 (1330)
T ss_dssp             CEEEEEETCTTSHHHHHHHHT--TSEEEEEEECCSHHHHHHHHHHC-----TTSEEECSCHHHHHHHHTTTCSBCSSCCB
T ss_pred             CceEEecccCccHHHHHHHHC--CCCceEEEEECCHHHHHHHHHhC-----CCCcEeeccHHHHhHhhhccchhhhhhhh
Confidence            458999999999987666644  44  5889999998777666552     23456666654321            00 


Q ss_pred             CcCCCCceEEEEcC----cc-----------c-----HHHHHHHHccCcccCeEEEEEe--C---CCcHHHHHHHHHHHH
Q 026122          141 VSFREQYDVAVARA----VA-----------E-----MRILAEYCLPLVRVGGLFVAAK--G---HDPQEEVKNSERAVQ  195 (243)
Q Consensus       141 ~~~~~~fD~I~~~~----~~-----------~-----~~~~l~~~~~~LkpgG~l~~~~--~---~~~~~~~~~~~~~l~  195 (243)
                      ....+.+|+|+...    ++           +     +..+++ +...++|. .+++..  +   ......+..+.+.|.
T Consensus       924 lp~~~~vDvl~GGpPCQ~FS~agr~~~~~~~d~R~~L~~~~lr-iv~~~rPk-~fv~ENV~glls~~~g~~~~~il~~L~ 1001 (1330)
T 3av4_A          924 LPQKGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFLS-YCDYYRPR-FFLLENVRNFVSYRRSMVLKLTLRCLV 1001 (1330)
T ss_dssp             CCCTTTCSEEEECCCCTTTCSSSCCCHHHHHHHHHSHHHHHHH-HHHHHCCS-EEEEEEEGGGGTTTTTHHHHHHHHHHH
T ss_pred             ccccCccceEEecCCCcccccccccccccccchhhHHHHHHHH-HHHHhcCc-EEEEeccHHHhccCccHHHHHHHHHHH
Confidence            00014689999741    00           0     112232 23345775 334433  1   122345667788889


Q ss_pred             HhCCeeeE
Q 026122          196 LMGASLLQ  203 (243)
Q Consensus       196 ~~g~~~~~  203 (243)
                      ..|+.+..
T Consensus      1002 ~lGY~v~~ 1009 (1330)
T 3av4_A         1002 RMGYQCTF 1009 (1330)
T ss_dssp             HHTCEEEE
T ss_pred             hcCCeeeE
Confidence            99997654

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=92.84  E-value=0.57  Score=38.09  Aligned_cols=104  Identities=8%  Similarity=0.004  Sum_probs=67.8

Q ss_pred             CCeEEEEcCC--CChHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCc-------CC
Q 026122           76 NLKLVDVGTG--AGLPGLVLAIA--CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-------FR  144 (243)
Q Consensus        76 ~~~VLDiGcG--~G~~~~~la~~--~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~-------~~  144 (243)
                      ++++|=.|++  +|. +..+++.  ..+++|+.++.++...+.+++..+..+-.++.++.+|+.+......       ..
T Consensus         7 ~k~vlVTGasg~~GI-G~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   85 (266)
T 3oig_A            7 GRNIVVMGVANKRSI-AWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKEQV   85 (266)
T ss_dssp             TCEEEEECCCSTTSH-HHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCcH-HHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHHHh
Confidence            6788989987  444 3344433  2478999999998766666666666554468899999876431100       01


Q ss_pred             CCceEEEEcCc--------c-----c--------------HHHHHHHHccCcccCeEEEEEeC
Q 026122          145 EQYDVAVARAV--------A-----E--------------MRILAEYCLPLVRVGGLFVAAKG  180 (243)
Q Consensus       145 ~~fD~I~~~~~--------~-----~--------------~~~~l~~~~~~LkpgG~l~~~~~  180 (243)
                      +..|+++.++-        .     +              ...+.+.+.+.++++|.++.+.+
T Consensus        86 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS  148 (266)
T 3oig_A           86 GVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTY  148 (266)
T ss_dssp             SCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEEC
T ss_pred             CCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEec
Confidence            36899998641        0     1              12355677788888999887763

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=92.73  E-value=0.1  Score=46.38  Aligned_cols=96  Identities=9%  Similarity=-0.012  Sum_probs=60.3

Q ss_pred             CCCCCeEEEEcCC--CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCE-EEEEccc---------------
Q 026122           73 CNSNLKLVDVGTG--AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNV-QIVRGRA---------------  134 (243)
Q Consensus        73 ~~~~~~VLDiGcG--~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~d~---------------  134 (243)
                      ++++.+||=.|++  .|..++.+++.. +++|++++.+++.++.++    ++|...+ .....+.               
T Consensus       218 ~~~g~~VlV~GasG~iG~~a~qla~~~-Ga~vi~~~~~~~~~~~~~----~lGa~~~i~~~~~~~~~~~~~~~~~~~~~~  292 (447)
T 4a0s_A          218 MKQGDIVLIWGASGGLGSYAIQFVKNG-GGIPVAVVSSAQKEAAVR----ALGCDLVINRAELGITDDIADDPRRVVETG  292 (447)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHH----HTTCCCEEEHHHHTCCTTGGGCHHHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHH----hcCCCEEEecccccccccccccccccchhh
Confidence            4568999999973  455666777665 679999999998776653    4565421 1111111               


Q ss_pred             ----cccccCCcCCCCceEEEEcCcccHHHHHHHHccCcccCeEEEEE
Q 026122          135 ----ETLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       135 ----~~~~~~~~~~~~fD~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                          +.+...  ....+|+|+-..-.   ..++.+.+.|++||+++.+
T Consensus       293 ~~~~~~v~~~--~g~g~Dvvid~~G~---~~~~~~~~~l~~~G~iv~~  335 (447)
T 4a0s_A          293 RKLAKLVVEK--AGREPDIVFEHTGR---VTFGLSVIVARRGGTVVTC  335 (447)
T ss_dssp             HHHHHHHHHH--HSSCCSEEEECSCH---HHHHHHHHHSCTTCEEEES
T ss_pred             hHHHHHHHHH--hCCCceEEEECCCc---hHHHHHHHHHhcCCEEEEE
Confidence                011000  01469999976543   3567777899999998764

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=92.59  E-value=0.73  Score=37.82  Aligned_cols=103  Identities=15%  Similarity=0.083  Sum_probs=66.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCC------------HHHHHHHHHHHHHcCCCCEEEEEccccccccCC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESM------------NKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV  141 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s------------~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~  141 (243)
                      +++||=.|++.|. +..+++.+  .+++|+.+|.+            .+.++.+....+..+. ++.++.+|+.+.....
T Consensus        10 gk~vlVTGas~gI-G~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~v~   87 (287)
T 3pxx_A           10 DKVVLVTGGARGQ-GRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGR-KAYTAEVDVRDRAAVS   87 (287)
T ss_dssp             TCEEEEETTTSHH-HHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTS-CEEEEECCTTCHHHHH
T ss_pred             CCEEEEeCCCChH-HHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCC-ceEEEEccCCCHHHHH
Confidence            6788988887664 44555432  46899999987            6666655555555543 5889999987643110


Q ss_pred             c-------CCCCceEEEEcCc----------cc-----------HHHHHHHHccCcccCeEEEEEeC
Q 026122          142 S-------FREQYDVAVARAV----------AE-----------MRILAEYCLPLVRVGGLFVAAKG  180 (243)
Q Consensus       142 ~-------~~~~fD~I~~~~~----------~~-----------~~~~l~~~~~~LkpgG~l~~~~~  180 (243)
                      .       ..++.|+++.++-          .+           ...+.+.+.+.++.+|.++.+.+
T Consensus        88 ~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS  154 (287)
T 3pxx_A           88 RELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGS  154 (287)
T ss_dssp             HHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECC
T ss_pred             HHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEecc
Confidence            0       0137899998741          01           23355667777888899877654

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=92.56  E-value=0.44  Score=41.17  Aligned_cols=98  Identities=10%  Similarity=0.082  Sum_probs=59.0

Q ss_pred             CCCCCeEEEEcC-C-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEE
Q 026122           73 CNSNLKLVDVGT-G-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVA  150 (243)
Q Consensus        73 ~~~~~~VLDiGc-G-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I  150 (243)
                      ++++.+||=+|+ | .|..++.+|+.. +++|++++ +++..+.+    +++|.+.  ++..+-.++.........+|+|
T Consensus       181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~-Ga~Vi~~~-~~~~~~~~----~~lGa~~--v~~~~~~~~~~~~~~~~g~D~v  252 (375)
T 2vn8_A          181 NCTGKRVLILGASGGVGTFAIQVMKAW-DAHVTAVC-SQDASELV----RKLGADD--VIDYKSGSVEEQLKSLKPFDFI  252 (375)
T ss_dssp             TCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEE-CGGGHHHH----HHTTCSE--EEETTSSCHHHHHHTSCCBSEE
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHhC-CCEEEEEe-ChHHHHHH----HHcCCCE--EEECCchHHHHHHhhcCCCCEE
Confidence            455889999993 3 566677777775 57999999 66544444    4566542  2222111111000001469999


Q ss_pred             EEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122          151 VARAVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       151 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      +-..-... ..++.+.+.|++||+++..-
T Consensus       253 id~~g~~~-~~~~~~~~~l~~~G~iv~~g  280 (375)
T 2vn8_A          253 LDNVGGST-ETWAPDFLKKWSGATYVTLV  280 (375)
T ss_dssp             EESSCTTH-HHHGGGGBCSSSCCEEEESC
T ss_pred             EECCCChh-hhhHHHHHhhcCCcEEEEeC
Confidence            97653331 34567788999999977644

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=92.33  E-value=0.79  Score=40.16  Aligned_cols=38  Identities=24%  Similarity=0.220  Sum_probs=28.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHH-------CCCCEEEEEeCCHHHHH
Q 026122           76 NLKLVDVGTGAGLPGLVLAIA-------CPDWKVTLLESMNKRCV  113 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~-------~~~~~v~~vD~s~~~~~  113 (243)
                      .-+|+|+|.|+|.++.-+.+.       ....+++.||+|+...+
T Consensus        81 ~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~  125 (387)
T 1zkd_A           81 TLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQ  125 (387)
T ss_dssp             SEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHH
T ss_pred             CcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHH
Confidence            347999999999987655432       12458999999997555

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=92.15  E-value=0.97  Score=35.36  Aligned_cols=67  Identities=13%  Similarity=0.110  Sum_probs=44.5

Q ss_pred             eEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           78 KLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        78 ~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      +||=.| |+|.+|..+++..  .+.+|++++.++......       .-.+++++.+|+.+.... . -+.+|+|+..+
T Consensus         2 kilVtG-atG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~-------~~~~~~~~~~D~~d~~~~-~-~~~~d~vi~~a   70 (224)
T 3h2s_A            2 KIAVLG-ATGRAGSAIVAEARRRGHEVLAVVRDPQKAADR-------LGATVATLVKEPLVLTEA-D-LDSVDAVVDAL   70 (224)
T ss_dssp             EEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH-------TCTTSEEEECCGGGCCHH-H-HTTCSEEEECC
T ss_pred             EEEEEc-CCCHHHHHHHHHHHHCCCEEEEEEecccccccc-------cCCCceEEecccccccHh-h-cccCCEEEECC
Confidence            466666 4677776766543  468999999998643321       113588999999875431 1 15689999865

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=92.03  E-value=0.22  Score=42.86  Aligned_cols=99  Identities=11%  Similarity=0.050  Sum_probs=54.6

Q ss_pred             CCCCCeEEEEcC--CCChHHHHHHHHCCCCEEEE-EeCCHHHHHHHHHHHHHcCCCCEEEEEcc---ccccccCCcCCCC
Q 026122           73 CNSNLKLVDVGT--GAGLPGLVLAIACPDWKVTL-LESMNKRCVFLEHAVSLTQLLNVQIVRGR---AETLGKDVSFREQ  146 (243)
Q Consensus        73 ~~~~~~VLDiGc--G~G~~~~~la~~~~~~~v~~-vD~s~~~~~~a~~~~~~~~~~~v~~~~~d---~~~~~~~~~~~~~  146 (243)
                      ++++.+||=+|+  |.|..++.+|+.. ++++++ ++.++.. +...+.++++|...  ++..+   ..++.........
T Consensus       165 ~~~g~~VlV~Ga~G~vG~~aiqlak~~-Ga~vi~~~~~~~~~-~~~~~~~~~lGa~~--vi~~~~~~~~~~~~~~~~~~~  240 (357)
T 1zsy_A          165 LQPGDSVIQNASNSGVGQAVIQIAAAL-GLRTINVVRDRPDI-QKLSDRLKSLGAEH--VITEEELRRPEMKNFFKDMPQ  240 (357)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHH-TCEEEEEECCCSCH-HHHHHHHHHTTCSE--EEEHHHHHSGGGGGTTSSSCC
T ss_pred             cCCCCEEEEeCCcCHHHHHHHHHHHHc-CCEEEEEecCccch-HHHHHHHHhcCCcE--EEecCcchHHHHHHHHhCCCC
Confidence            355899999997  3566777888776 455555 4444321 11123345677542  22221   1122111000024


Q ss_pred             ceEEEEcCcccHHHHHHHHccCcccCeEEEEE
Q 026122          147 YDVAVARAVAEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       147 fD~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                      +|+|+-....  ... ..+.+.|+++|+++..
T Consensus       241 ~Dvvid~~g~--~~~-~~~~~~l~~~G~iv~~  269 (357)
T 1zsy_A          241 PRLALNCVGG--KSS-TELLRQLARGGTMVTY  269 (357)
T ss_dssp             CSEEEESSCH--HHH-HHHHTTSCTTCEEEEC
T ss_pred             ceEEEECCCc--HHH-HHHHHhhCCCCEEEEE
Confidence            9999865432  222 3467899999998765

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=91.97  E-value=0.21  Score=43.30  Aligned_cols=95  Identities=11%  Similarity=0.130  Sum_probs=57.5

Q ss_pred             CCCCeEEEEcCC--CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccC--CcCCCCceE
Q 026122           74 NSNLKLVDVGTG--AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD--VSFREQYDV  149 (243)
Q Consensus        74 ~~~~~VLDiGcG--~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~--~~~~~~fD~  149 (243)
                      .++.+||=+|++  .|..++.+|+.. +++|+++. +++..+.+    +++|..  .++..+-.++...  ....+.+|+
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~~-Ga~Vi~~~-~~~~~~~~----~~lGa~--~vi~~~~~~~~~~v~~~t~g~~d~  234 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRLS-GYIPIATC-SPHNFDLA----KSRGAE--EVFDYRAPNLAQTIRTYTKNNLRY  234 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEE-CGGGHHHH----HHTTCS--EEEETTSTTHHHHHHHHTTTCCCE
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHHC-CCEEEEEe-CHHHHHHH----HHcCCc--EEEECCCchHHHHHHHHccCCccE
Confidence            348899999984  677888888776 56999885 77665544    456654  2332221211100  001245999


Q ss_pred             EEEcCcccHHHHHHHHccCc-ccCeEEEEE
Q 026122          150 AVARAVAEMRILAEYCLPLV-RVGGLFVAA  178 (243)
Q Consensus       150 I~~~~~~~~~~~l~~~~~~L-kpgG~l~~~  178 (243)
                      |+-..-.  ...++.+.+.| ++||+++..
T Consensus       235 v~d~~g~--~~~~~~~~~~l~~~~G~iv~~  262 (371)
T 3gqv_A          235 ALDCITN--VESTTFCFAAIGRAGGHYVSL  262 (371)
T ss_dssp             EEESSCS--HHHHHHHHHHSCTTCEEEEES
T ss_pred             EEECCCc--hHHHHHHHHHhhcCCCEEEEE
Confidence            9965332  23455566677 689997764

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=91.55  E-value=1.5  Score=35.87  Aligned_cols=78  Identities=15%  Similarity=0.012  Sum_probs=51.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCC-CCEEEEEccccccccCCc-------CCC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVS-------FRE  145 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~-------~~~  145 (243)
                      +++||=.|++ |.+|..+++.+  .+++|++++.++..++...+.++..+. .++.++.+|+.+......       ..+
T Consensus        32 ~k~vlVTGas-ggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  110 (279)
T 1xg5_A           32 DRLALVTGAS-GGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHS  110 (279)
T ss_dssp             TCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHhCC
Confidence            6778888865 55565665532  468999999998877666666665554 247888899876431100       003


Q ss_pred             CceEEEEcC
Q 026122          146 QYDVAVARA  154 (243)
Q Consensus       146 ~fD~I~~~~  154 (243)
                      ..|+|+.++
T Consensus       111 ~iD~vi~~A  119 (279)
T 1xg5_A          111 GVDICINNA  119 (279)
T ss_dssp             CCSEEEECC
T ss_pred             CCCEEEECC
Confidence            689999864

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=91.54  E-value=0.53  Score=39.36  Aligned_cols=77  Identities=17%  Similarity=0.099  Sum_probs=53.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcC-------CCC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSF-------REQ  146 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~-------~~~  146 (243)
                      +++||=.|++.| +|..+++.+  .+++|+++|.++..++.+.+.++..+. ++.++.+|+.+.......       .+.
T Consensus        31 gk~vlVTGas~g-IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  108 (301)
T 3tjr_A           31 GRAAVVTGGASG-IGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQGF-DAHGVVCDVRHLDEMVRLADEAFRLLGG  108 (301)
T ss_dssp             TCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-ceEEEEccCCCHHHHHHHHHHHHHhCCC
Confidence            678998888765 444555432  468999999999888777666665553 588999998774321000       136


Q ss_pred             ceEEEEcC
Q 026122          147 YDVAVARA  154 (243)
Q Consensus       147 fD~I~~~~  154 (243)
                      .|+++.++
T Consensus       109 id~lvnnA  116 (301)
T 3tjr_A          109 VDVVFSNA  116 (301)
T ss_dssp             CSEEEECC
T ss_pred             CCEEEECC
Confidence            89999874

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=91.53  E-value=0.44  Score=38.72  Aligned_cols=77  Identities=12%  Similarity=0.023  Sum_probs=49.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeC-CHHHHHHHHHHHHHcCCCCEEEEEccccccccCCc-C------CC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLES-MNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-F------RE  145 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~-s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~-~------~~  145 (243)
                      +++||=.|+ +|.+|..+++.+  .+++|++++. ++...+...+.++..+. ++.++.+|+.+...... .      -+
T Consensus        21 ~k~vlItGa-sggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~   98 (274)
T 1ja9_A           21 GKVALTTGA-GRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGA-QGVAIQADISKPSEVVALFDKAVSHFG   98 (274)
T ss_dssp             TCEEEETTT-TSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            667887775 566666666543  4689999998 77666555555554443 58888999876421100 0      03


Q ss_pred             CceEEEEcC
Q 026122          146 QYDVAVARA  154 (243)
Q Consensus       146 ~fD~I~~~~  154 (243)
                      ..|+++.++
T Consensus        99 ~~d~vi~~A  107 (274)
T 1ja9_A           99 GLDFVMSNS  107 (274)
T ss_dssp             CEEEEECCC
T ss_pred             CCCEEEECC
Confidence            689999764

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=91.52  E-value=1.2  Score=32.41  Aligned_cols=70  Identities=14%  Similarity=0.142  Sum_probs=45.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcC-CCCceEEEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSF-REQYDVAVA  152 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~-~~~fD~I~~  152 (243)
                      ..+|+=+||  |.+|..+++..  .+.+|+++|.+++.++.+++    .   .+.++.+|..+....... -..+|+|+.
T Consensus         6 ~~~v~I~G~--G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~----~---~~~~~~gd~~~~~~l~~~~~~~~d~vi~   76 (141)
T 3llv_A            6 RYEYIVIGS--EAAGVGLVRELTAAGKKVLAVDKSKEKIELLED----E---GFDAVIADPTDESFYRSLDLEGVSAVLI   76 (141)
T ss_dssp             CCSEEEECC--SHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH----T---TCEEEECCTTCHHHHHHSCCTTCSEEEE
T ss_pred             CCEEEEECC--CHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH----C---CCcEEECCCCCHHHHHhCCcccCCEEEE
Confidence            458888888  55666666542  36799999999986655443    2   356788887663211000 146899887


Q ss_pred             cC
Q 026122          153 RA  154 (243)
Q Consensus       153 ~~  154 (243)
                      ..
T Consensus        77 ~~   78 (141)
T 3llv_A           77 TG   78 (141)
T ss_dssp             CC
T ss_pred             ec
Confidence            54

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=91.51  E-value=0.9  Score=36.89  Aligned_cols=100  Identities=19%  Similarity=0.158  Sum_probs=64.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC-------cCCCC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------SFREQ  146 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-------~~~~~  146 (243)
                      ++++|=.|++.| ++..+++.+  .+++|+.+|.+++.++.+.+..   + .++.++.+|+.+.....       ...++
T Consensus         8 gk~~lVTGas~g-IG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   82 (255)
T 4eso_A            8 GKKAIVIGGTHG-MGLATVRRLVEGGAEVLLTGRNESNIARIREEF---G-PRVHALRSDIADLNEIAVLGAAAGQTLGA   82 (255)
T ss_dssp             TCEEEEETCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---G-GGEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C-CcceEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            778998897765 444555432  4689999999987665544332   2 25889999987743210       00147


Q ss_pred             ceEEEEcCc------------cc-----------HHHHHHHHccCcccCeEEEEEeC
Q 026122          147 YDVAVARAV------------AE-----------MRILAEYCLPLVRVGGLFVAAKG  180 (243)
Q Consensus       147 fD~I~~~~~------------~~-----------~~~~l~~~~~~LkpgG~l~~~~~  180 (243)
                      .|+++.++-            .+           .-.+.+.+.+.++.+|.++.+.+
T Consensus        83 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS  139 (255)
T 4eso_A           83 IDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSS  139 (255)
T ss_dssp             EEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECC
Confidence            899998641            01           22355667778888899887653

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=91.46  E-value=1.7  Score=38.40  Aligned_cols=120  Identities=11%  Similarity=0.082  Sum_probs=67.7

Q ss_pred             CCeEEEEcCCC-ChHHHHHHHHCCCCEEE-EEeCCHHHHHHHHHHHHHcCCCCEEEEEc---cccccccCCcCCCCceEE
Q 026122           76 NLKLVDVGTGA-GLPGLVLAIACPDWKVT-LLESMNKRCVFLEHAVSLTQLLNVQIVRG---RAETLGKDVSFREQYDVA  150 (243)
Q Consensus        76 ~~~VLDiGcG~-G~~~~~la~~~~~~~v~-~vD~s~~~~~~a~~~~~~~~~~~v~~~~~---d~~~~~~~~~~~~~fD~I  150 (243)
                      ..+|.=||||. |..-+......++.+++ .+|.+++..+.+.+...+.++..+.+...   |.+++...    ...|+|
T Consensus        20 ~~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ll~~----~~vD~V   95 (444)
T 2ixa_A           20 KVRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLKD----KNIDAV   95 (444)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHHHTTCCCCEEECSSTTTHHHHTTC----TTCCEE
T ss_pred             CceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHHhcCCCCCceeccCCCCHHHHhcC----CCCCEE
Confidence            34788889873 22111112234677765 56999987666555554556544455442   66665432    468999


Q ss_pred             EEcCcccHHHHHHHHccCcccCeEEEEEeC-CCcHHHHHHHHHHHHHhCCee
Q 026122          151 VARAVAEMRILAEYCLPLVRVGGLFVAAKG-HDPQEEVKNSERAVQLMGASL  201 (243)
Q Consensus       151 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~-~~~~~~~~~~~~~l~~~g~~~  201 (243)
                      +........  .+.+.+.|+.|=.+++.++ ....++..++.+..++.|..+
T Consensus        96 ~i~tp~~~h--~~~~~~al~aGkhV~~EKP~a~~~~ea~~l~~~a~~~g~~~  145 (444)
T 2ixa_A           96 FVSSPWEWH--HEHGVAAMKAGKIVGMEVSGAITLEECWDYVKVSEQTGVPL  145 (444)
T ss_dssp             EECCCGGGH--HHHHHHHHHTTCEEEECCCCCSSHHHHHHHHHHHHHHCCCE
T ss_pred             EEcCCcHHH--HHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHhCCeE
Confidence            875433211  1223345555655566553 345666777777777777544

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=91.45  E-value=0.32  Score=39.93  Aligned_cols=74  Identities=9%  Similarity=-0.053  Sum_probs=48.2

Q ss_pred             EEEEEccccccccCCcCCCCceEEEEcC---cc---------------cHHHHHHHHccCcccCeEEEEEeCCCcHHHHH
Q 026122          127 VQIVRGRAETLGKDVSFREQYDVAVARA---VA---------------EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVK  188 (243)
Q Consensus       127 v~~~~~d~~~~~~~~~~~~~fD~I~~~~---~~---------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~  188 (243)
                      .+++++|..+..... ..+++|+|++..   ..               .....++.+.++|+|||.+++..+.   .+..
T Consensus         5 ~~l~~gD~~~~l~~l-~~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~~~d---~~~~   80 (260)
T 1g60_A            5 NKIHQMNCFDFLDQV-ENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNTP---FNCA   80 (260)
T ss_dssp             SSEEECCHHHHHHHS-CTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEECH---HHHH
T ss_pred             CeEEechHHHHHHhc-cccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCc---HHHH
Confidence            457788876532211 126899999852   11               2467778889999999999887642   2334


Q ss_pred             HHHHHHHHhCCeeeEE
Q 026122          189 NSERAVQLMGASLLQL  204 (243)
Q Consensus       189 ~~~~~l~~~g~~~~~~  204 (243)
                      .+...+.+.||.....
T Consensus        81 ~~~~~~~~~gf~~~~~   96 (260)
T 1g60_A           81 FICQYLVSKGMIFQNW   96 (260)
T ss_dssp             HHHHHHHHTTCEEEEE
T ss_pred             HHHHHHHhhccceeEE
Confidence            4555677888876553

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=91.35  E-value=2.3  Score=34.58  Aligned_cols=90  Identities=10%  Similarity=0.023  Sum_probs=58.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      ..+||=.||  |.+|..+++..  .+.+|++++.++........       .+++++.+|+.++. .    ..+|+|+..
T Consensus         5 ~~~ilVtGa--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-------~~~~~~~~D~~d~~-~----~~~d~vi~~   70 (286)
T 3ius_A            5 TGTLLSFGH--GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRA-------SGAEPLLWPGEEPS-L----DGVTHLLIS   70 (286)
T ss_dssp             CCEEEEETC--CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHH-------TTEEEEESSSSCCC-C----TTCCEEEEC
T ss_pred             cCcEEEECC--cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhh-------CCCeEEEecccccc-c----CCCCEEEEC
Confidence            368999994  99988887653  35799999999865433221       35899999999865 1    579999986


Q ss_pred             Ccc------cHHHHHHHHccCcccCeEEEEEe
Q 026122          154 AVA------EMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       154 ~~~------~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      +..      ....+++.+.+.-..-+++++.+
T Consensus        71 a~~~~~~~~~~~~l~~a~~~~~~~~~~~v~~S  102 (286)
T 3ius_A           71 TAPDSGGDPVLAALGDQIAARAAQFRWVGYLS  102 (286)
T ss_dssp             CCCBTTBCHHHHHHHHHHHHTGGGCSEEEEEE
T ss_pred             CCccccccHHHHHHHHHHHhhcCCceEEEEee
Confidence            521      13445555544312224555544

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=91.34  E-value=0.84  Score=37.97  Aligned_cols=103  Identities=9%  Similarity=-0.063  Sum_probs=64.3

Q ss_pred             CCeEEEEcCCCC-hHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC-------cCCC
Q 026122           76 NLKLVDVGTGAG-LPGLVLAIA--CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------SFRE  145 (243)
Q Consensus        76 ~~~VLDiGcG~G-~~~~~la~~--~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-------~~~~  145 (243)
                      ++++|=.|+++| .++..+++.  ..+++|+.++.++...+.+++..+..+  ++.++.+|+.+.....       ...+
T Consensus        31 gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~~g  108 (293)
T 3grk_A           31 GKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEELG--AFVAGHCDVADAASIDAVFETLEKKWG  108 (293)
T ss_dssp             TCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHHT--CEEEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred             CCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CceEEECCCCCHHHHHHHHHHHHHhcC
Confidence            778999998743 233344432  246899999999766665555555544  4788899987643110       0014


Q ss_pred             CceEEEEcCc-c---------------c-----------HHHHHHHHccCcccCeEEEEEeC
Q 026122          146 QYDVAVARAV-A---------------E-----------MRILAEYCLPLVRVGGLFVAAKG  180 (243)
Q Consensus       146 ~fD~I~~~~~-~---------------~-----------~~~~l~~~~~~LkpgG~l~~~~~  180 (243)
                      +.|+++.++- .               +           ...+.+.+.+.++.+|.++.+.+
T Consensus       109 ~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS  170 (293)
T 3grk_A          109 KLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTY  170 (293)
T ss_dssp             CCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred             CCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEee
Confidence            7899998741 0               1           12344556666777899887763

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=91.30  E-value=0.18  Score=43.43  Aligned_cols=100  Identities=6%  Similarity=-0.057  Sum_probs=57.0

Q ss_pred             CCCC-CeEEEEcC--CCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEc------cccccccCCc-
Q 026122           73 CNSN-LKLVDVGT--GAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRG------RAETLGKDVS-  142 (243)
Q Consensus        73 ~~~~-~~VLDiGc--G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~------d~~~~~~~~~-  142 (243)
                      ++++ .+||=+|+  |.|..++.+|+.. +++|+++..+++.++..++.++++|...  ++..      ++.+...... 
T Consensus       164 ~~~g~~~VlV~Ga~G~vG~~aiqlak~~-Ga~vi~~~~~~~~~~~~~~~~~~lGa~~--vi~~~~~~~~~~~~~i~~~t~  240 (364)
T 1gu7_A          164 LTPGKDWFIQNGGTSAVGKYASQIGKLL-NFNSISVIRDRPNLDEVVASLKELGATQ--VITEDQNNSREFGPTIKEWIK  240 (364)
T ss_dssp             CCTTTCEEEESCTTSHHHHHHHHHHHHH-TCEEEEEECCCTTHHHHHHHHHHHTCSE--EEEHHHHHCGGGHHHHHHHHH
T ss_pred             cCCCCcEEEECCCCcHHHHHHHHHHHHC-CCEEEEEecCccccHHHHHHHHhcCCeE--EEecCccchHHHHHHHHHHhh
Confidence            3458 89999987  3566677777765 5788888765543222233445667642  2221      1111100000 


Q ss_pred             -CCCCceEEEEcCcccHHHHHHHHccCcccCeEEEEE
Q 026122          143 -FREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       143 -~~~~fD~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                       ....+|+|+-..-.  .... .+.+.|+++|+++.+
T Consensus       241 ~~~~g~Dvvid~~G~--~~~~-~~~~~l~~~G~~v~~  274 (364)
T 1gu7_A          241 QSGGEAKLALNCVGG--KSST-GIARKLNNNGLMLTY  274 (364)
T ss_dssp             HHTCCEEEEEESSCH--HHHH-HHHHTSCTTCEEEEC
T ss_pred             ccCCCceEEEECCCc--hhHH-HHHHHhccCCEEEEe
Confidence             01469999975432  2223 566899999998764

>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*

Probab=91.13  E-value=1.5  Score=38.11  Aligned_cols=111  Identities=11%  Similarity=0.035  Sum_probs=64.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCC-CCEEEEE-eCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACP-DWKVTLL-ESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~-~~~v~~v-D~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      ..+|.=||||-|..-+......+ +.+++|| |.+++   .+++.+++.|++   . ..|++++.      +..|+|+.-
T Consensus         7 ~~rv~VvG~G~g~~h~~a~~~~~~~~elvav~~~~~~---~a~~~a~~~gv~---~-~~~~~~l~------~~~D~v~i~   73 (372)
T 4gmf_A            7 KQRVLIVGAKFGEMYLNAFMQPPEGLELVGLLAQGSA---RSRELAHAFGIP---L-YTSPEQIT------GMPDIACIV   73 (372)
T ss_dssp             CEEEEEECSTTTHHHHHTTSSCCTTEEEEEEECCSSH---HHHHHHHHTTCC---E-ESSGGGCC------SCCSEEEEC
T ss_pred             CCEEEEEehHHHHHHHHHHHhCCCCeEEEEEECCCHH---HHHHHHHHhCCC---E-ECCHHHHh------cCCCEEEEE
Confidence            56899999998875322222334 4677765 88875   466677777764   2 46777764      347877653


Q ss_pred             Ccc--cHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCe
Q 026122          154 AVA--EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGAS  200 (243)
Q Consensus       154 ~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~  200 (243)
                      ...  ....-.+.+...|+.|=.+++.++ -..++..++.+..++.|..
T Consensus        74 ~p~~~h~~~~~~~a~~al~aGkhVl~EKP-l~~~ea~~l~~~A~~~g~~  121 (372)
T 4gmf_A           74 VRSTVAGGAGTQLARHFLARGVHVIQEHP-LHPDDISSLQTLAQEQGCC  121 (372)
T ss_dssp             CC--CTTSHHHHHHHHHHHTTCEEEEESC-CCHHHHHHHHHHHHHHTCC
T ss_pred             CCCcccchhHHHHHHHHHHcCCcEEEecC-CCHHHHHHHHHHHHHcCCE
Confidence            211  111112334455556655566555 3556777777766766653

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=90.82  E-value=1.1  Score=36.80  Aligned_cols=102  Identities=14%  Similarity=0.061  Sum_probs=62.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCC-HHHHHHHHHHHHHcCCCCEEEEEccccccccCCc-------CCC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESM-NKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-------FRE  145 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s-~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~-------~~~  145 (243)
                      ++++|=.|++.|. +..+++.+  .+++|+.++.+ .+..+...+.++..+. ++.++.+|+.+......       ..+
T Consensus        31 gk~~lVTGas~GI-G~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g  108 (271)
T 3v2g_A           31 GKTAFVTGGSRGI-GAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAGG-RAVAIRADNRDAEAIEQAIRETVEALG  108 (271)
T ss_dssp             TCEEEEETTTSHH-HHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCcHH-HHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            7789999987664 44555432  46899998665 4545545555555443 58889999876431100       013


Q ss_pred             CceEEEEcCc------------cc-----------HHHHHHHHccCcccCeEEEEEe
Q 026122          146 QYDVAVARAV------------AE-----------MRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       146 ~fD~I~~~~~------------~~-----------~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      +.|+++.++-            .+           ...+.+.+.+.++++|.++.+.
T Consensus       109 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~is  165 (271)
T 3v2g_A          109 GLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIG  165 (271)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEEC
T ss_pred             CCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEe
Confidence            7899998741            01           2234556667777888888764

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=90.72  E-value=0.15  Score=43.71  Aligned_cols=95  Identities=12%  Similarity=0.113  Sum_probs=52.7

Q ss_pred             CCCCCeEEEEcCC--CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccC--CcCCCCce
Q 026122           73 CNSNLKLVDVGTG--AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD--VSFREQYD  148 (243)
Q Consensus        73 ~~~~~~VLDiGcG--~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~--~~~~~~fD  148 (243)
                      ++++.+||=.|++  .|..++.+|+...+.+|++++ +++..+.+    + .|...  ++. +-.++...  ....+.+|
T Consensus       140 ~~~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~-~~~~~~~~----~-~ga~~--~~~-~~~~~~~~~~~~~~~g~D  210 (349)
T 4a27_A          140 LREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTA-STFKHEAI----K-DSVTH--LFD-RNADYVQEVKRISAEGVD  210 (349)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEE-CGGGHHHH----G-GGSSE--EEE-TTSCHHHHHHHHCTTCEE
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeC-CHHHHHHH----H-cCCcE--EEc-CCccHHHHHHHhcCCCce
Confidence            4558999999984  355666666665567999998 44433333    2 45432  222 11111100  00125799


Q ss_pred             EEEEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122          149 VAVARAVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       149 ~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      +|+-..-..   .++.+.+.|+++|+++..-
T Consensus       211 vv~d~~g~~---~~~~~~~~l~~~G~~v~~G  238 (349)
T 4a27_A          211 IVLDCLCGD---NTGKGLSLLKPLGTYILYG  238 (349)
T ss_dssp             EEEEECC----------CTTEEEEEEEEEEC
T ss_pred             EEEECCCch---hHHHHHHHhhcCCEEEEEC
Confidence            999643221   1367889999999988653

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=90.49  E-value=1.9  Score=32.82  Aligned_cols=94  Identities=11%  Similarity=-0.029  Sum_probs=53.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--C-CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcC--CCCceEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC--P-DWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSF--REQYDVA  150 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~--~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~--~~~fD~I  150 (243)
                      +.+|+=+||  |.+|..+++..  . +.+|+++|.+++.++.++    ..+   +.++.+|..+.......  -..+|+|
T Consensus        39 ~~~v~IiG~--G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~----~~g---~~~~~gd~~~~~~l~~~~~~~~ad~v  109 (183)
T 3c85_A           39 HAQVLILGM--GRIGTGAYDELRARYGKISLGIEIREEAAQQHR----SEG---RNVISGDATDPDFWERILDTGHVKLV  109 (183)
T ss_dssp             TCSEEEECC--SHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHH----HTT---CCEEECCTTCHHHHHTBCSCCCCCEE
T ss_pred             CCcEEEECC--CHHHHHHHHHHHhccCCeEEEEECCHHHHHHHH----HCC---CCEEEcCCCCHHHHHhccCCCCCCEE
Confidence            568888876  56665565432  3 578999999997665543    233   45667776542110000  1568999


Q ss_pred             EEcCcc-c-HHHHHHHHccCcccCeEEEEEe
Q 026122          151 VARAVA-E-MRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       151 ~~~~~~-~-~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      +..... . -..++. ..+.+.|++.++...
T Consensus       110 i~~~~~~~~~~~~~~-~~~~~~~~~~ii~~~  139 (183)
T 3c85_A          110 LLAMPHHQGNQTALE-QLQRRNYKGQIAAIA  139 (183)
T ss_dssp             EECCSSHHHHHHHHH-HHHHTTCCSEEEEEE
T ss_pred             EEeCCChHHHHHHHH-HHHHHCCCCEEEEEE
Confidence            874322 1 122222 334456667766644

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=90.44  E-value=3  Score=37.23  Aligned_cols=94  Identities=16%  Similarity=0.195  Sum_probs=56.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc-------C------CC--CEEEEEccccccccC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT-------Q------LL--NVQIVRGRAETLGKD  140 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~------~~--~v~~~~~d~~~~~~~  140 (243)
                      -.+|.=||+|.=..++.......+.+|+++|.+++.++.+++..+..       +      ..  ..++ ..|.+.+   
T Consensus        37 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i-~~~~~~~---  112 (463)
T 1zcj_A           37 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF-SSSTKEL---  112 (463)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEE-ESCGGGG---
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhh-cCCHHHH---
Confidence            35788898875222222222334679999999999888776543210       1      00  1222 3444322   


Q ss_pred             CcCCCCceEEEEcCcccH---HHHHHHHccCcccCeEEEE
Q 026122          141 VSFREQYDVAVARAVAEM---RILAEYCLPLVRVGGLFVA  177 (243)
Q Consensus       141 ~~~~~~fD~I~~~~~~~~---~~~l~~~~~~LkpgG~l~~  177 (243)
                          ...|+|+.....+.   ..+++.+...++|+..++.
T Consensus       113 ----~~aDlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~s  148 (463)
T 1zcj_A          113 ----STVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCT  148 (463)
T ss_dssp             ----TTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             ----CCCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEe
Confidence                45899998654443   6777888888888866543

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=90.34  E-value=1.2  Score=36.92  Aligned_cols=103  Identities=10%  Similarity=0.106  Sum_probs=64.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHH-HHHHHHHHHHcCCCCEEEEEccccccccCC-------cCCC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKR-CVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------SFRE  145 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~-~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-------~~~~  145 (243)
                      +++||=.|++.| ++..+++.+  .+++|+.+|.++.. .+.+.+..+..+. ++.++.+|+.+.....       ...+
T Consensus        47 gk~vlVTGas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g  124 (291)
T 3ijr_A           47 GKNVLITGGDSG-IGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEGV-KCVLLPGDLSDEQHCKDIVQETVRQLG  124 (291)
T ss_dssp             TCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTC-CEEEEESCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            678898897665 444555432  46899999998653 3334444444443 5889999987642110       0013


Q ss_pred             CceEEEEcCc-----c--------c-----------HHHHHHHHccCcccCeEEEEEeC
Q 026122          146 QYDVAVARAV-----A--------E-----------MRILAEYCLPLVRVGGLFVAAKG  180 (243)
Q Consensus       146 ~fD~I~~~~~-----~--------~-----------~~~~l~~~~~~LkpgG~l~~~~~  180 (243)
                      ..|+++.++-     .        +           ...+.+.+.+.++.+|.++.+.+
T Consensus       125 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS  183 (291)
T 3ijr_A          125 SLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTAS  183 (291)
T ss_dssp             SCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECC
T ss_pred             CCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEec
Confidence            6899998641     0        1           23456677788888998887653

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=90.24  E-value=1.5  Score=36.12  Aligned_cols=78  Identities=14%  Similarity=-0.003  Sum_probs=53.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcccccc-ccC-------CcCCC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETL-GKD-------VSFRE  145 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-~~~-------~~~~~  145 (243)
                      +++||=.|++.| +|..+++.+  .+++|++++.++...+.+.+.++..+-.++.++.+|+.+. ...       ....+
T Consensus        12 ~k~vlITGas~G-IG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~~~g   90 (311)
T 3o26_A           12 RRCAVVTGGNKG-IGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKTHFG   90 (311)
T ss_dssp             CCEEEESSCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHHHHS
T ss_pred             CcEEEEecCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHHhCC
Confidence            678888887655 555555432  4689999999998777666666655545689999998875 210       00014


Q ss_pred             CceEEEEcC
Q 026122          146 QYDVAVARA  154 (243)
Q Consensus       146 ~fD~I~~~~  154 (243)
                      +.|+++.++
T Consensus        91 ~iD~lv~nA   99 (311)
T 3o26_A           91 KLDILVNNA   99 (311)
T ss_dssp             SCCEEEECC
T ss_pred             CCCEEEECC
Confidence            799999986

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=90.00  E-value=1.2  Score=37.05  Aligned_cols=99  Identities=16%  Similarity=0.098  Sum_probs=64.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC-------cCCCC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIA--CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------SFREQ  146 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~--~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-------~~~~~  146 (243)
                      ++.+|=-|+++|. +..+|+.  ..+++|+.+|.+++.++.+   ++..+- ++..+.+|+.+.....       ..-++
T Consensus        29 gKvalVTGas~GI-G~aiA~~la~~Ga~V~i~~r~~~~l~~~---~~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~~G~  103 (273)
T 4fgs_A           29 AKIAVITGATSGI-GLAAAKRFVAEGARVFITGRRKDVLDAA---IAEIGG-GAVGIQADSANLAELDRLYEKVKAEAGR  103 (273)
T ss_dssp             TCEEEEESCSSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHH---HHHHCT-TCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCcCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHH---HHHcCC-CeEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            7888888988875 3444443  3578999999999866544   344443 4677888876632110       00157


Q ss_pred             ceEEEEcCc------------c-----------cHHHHHHHHccCcccCeEEEEEe
Q 026122          147 YDVAVARAV------------A-----------EMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       147 fD~I~~~~~------------~-----------~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      .|+++.|+-            .           ..-.+.+.+.+.++.+|.++.+.
T Consensus       104 iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInis  159 (273)
T 4fgs_A          104 IDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTG  159 (273)
T ss_dssp             EEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEC
T ss_pred             CCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence            899998740            0           12345567778888999877665

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=89.86  E-value=2.9  Score=34.72  Aligned_cols=78  Identities=9%  Similarity=-0.063  Sum_probs=49.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEE-EccccccccCCcCCCCceEEEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIV-RGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~-~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      +.+||=.|+ +|.+|..+++..  .+.+|++++.++...+......+...-.+++++ .+|+.+.......-..+|+|+.
T Consensus        11 ~~~vlVTGa-tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vih   89 (342)
T 1y1p_A           11 GSLVLVTGA-NGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVAH   89 (342)
T ss_dssp             TCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEEE
T ss_pred             CCEEEEECC-ccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHHHHcCCCEEEE
Confidence            678888775 577776766542  367999999998765544433322111358888 7898765432111246899998


Q ss_pred             cC
Q 026122          153 RA  154 (243)
Q Consensus       153 ~~  154 (243)
                      .+
T Consensus        90 ~A   91 (342)
T 1y1p_A           90 IA   91 (342)
T ss_dssp             CC
T ss_pred             eC
Confidence            64

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=89.78  E-value=1.4  Score=36.19  Aligned_cols=77  Identities=19%  Similarity=0.166  Sum_probs=55.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC-------cCCCC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIA--CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------SFREQ  146 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~--~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-------~~~~~  146 (243)
                      ++.+|=-|++.|. +..+|+.  ..+++|+.+|.+++.++.+.+.++..+. ++.++.+|+.+...-.       ..-++
T Consensus         7 gKvalVTGas~GI-G~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g~-~~~~~~~Dvt~~~~v~~~~~~~~~~~G~   84 (254)
T 4fn4_A            7 NKVVIVTGAGSGI-GRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGK-EVLGVKADVSKKKDVEEFVRRTFETYSR   84 (254)
T ss_dssp             TCEEEEETTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCCHH-HHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            7888888988875 3344433  2478999999999988888877777764 5888999987643110       00157


Q ss_pred             ceEEEEcC
Q 026122          147 YDVAVARA  154 (243)
Q Consensus       147 fD~I~~~~  154 (243)
                      .|+++.|+
T Consensus        85 iDiLVNNA   92 (254)
T 4fn4_A           85 IDVLCNNA   92 (254)
T ss_dssp             CCEEEECC
T ss_pred             CCEEEECC
Confidence            89999874

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=89.67  E-value=1.6  Score=36.73  Aligned_cols=110  Identities=15%  Similarity=0.111  Sum_probs=63.5

Q ss_pred             CeEEEEcCCC-ChHHHHHHHHCCCCEEEE-EeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           77 LKLVDVGTGA-GLPGLVLAIACPDWKVTL-LESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        77 ~~VLDiGcG~-G~~~~~la~~~~~~~v~~-vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      .+|.=||||. |..-+......++.++++ +|.+++.   +++.++..+.   .  ..|.+++...    ...|+|+...
T Consensus         4 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~---~~~~~~~~~~---~--~~~~~~~l~~----~~~D~V~i~t   71 (331)
T 4hkt_A            4 VRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAA---AEAIAGAYGC---E--VRTIDAIEAA----ADIDAVVICT   71 (331)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHH---HHHHHHHTTC---E--ECCHHHHHHC----TTCCEEEECS
T ss_pred             eEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHH---HHHHHHHhCC---C--cCCHHHHhcC----CCCCEEEEeC
Confidence            4678899975 322112222347788875 7999864   4444455554   3  4566665432    4689998754


Q ss_pred             cc-cHHHHHHHHccCcccCeEEEEEeC-CCcHHHHHHHHHHHHHhCCee
Q 026122          155 VA-EMRILAEYCLPLVRVGGLFVAAKG-HDPQEEVKNSERAVQLMGASL  201 (243)
Q Consensus       155 ~~-~~~~~l~~~~~~LkpgG~l~~~~~-~~~~~~~~~~~~~l~~~g~~~  201 (243)
                      .. ...++   +...|+.|-.+++..+ ....++..++.+..++.|..+
T Consensus        72 p~~~h~~~---~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~~~  117 (331)
T 4hkt_A           72 PTDTHADL---IERFARAGKAIFCEKPIDLDAERVRACLKVVSDTKAKL  117 (331)
T ss_dssp             CGGGHHHH---HHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCE
T ss_pred             CchhHHHH---HHHHHHcCCcEEEecCCCCCHHHHHHHHHHHHHcCCeE
Confidence            32 22222   2334555656666554 355677777777777777544

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=89.62  E-value=6.8  Score=31.88  Aligned_cols=107  Identities=15%  Similarity=0.081  Sum_probs=60.6

Q ss_pred             eEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCcc-
Q 026122           78 KLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAVA-  156 (243)
Q Consensus        78 ~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~-  156 (243)
                      +|.=||+|.=...+...... +.+|+.+|.+++..+.+.+.    |..   ...  ..+..      ...|+|+..... 
T Consensus         3 ~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~~----g~~---~~~--~~~~~------~~~D~vi~~v~~~   66 (289)
T 2cvz_A            3 KVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFEKALRHQEE----FGS---EAV--PLERV------AEARVIFTCLPTT   66 (289)
T ss_dssp             CEEEECCSTTHHHHHHHHHT-TSCEEEECSSTHHHHHHHHH----HCC---EEC--CGGGG------GGCSEEEECCSSH
T ss_pred             eEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHC----CCc---ccC--HHHHH------hCCCEEEEeCCCh
Confidence            56677887532222222234 67899999998766544332    321   211  22211      358999976532 


Q ss_pred             -cHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCee
Q 026122          157 -EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASL  201 (243)
Q Consensus       157 -~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~  201 (243)
                       ....+++.+.+.+++|..++.. +........++.+.+...|...
T Consensus        67 ~~~~~v~~~l~~~l~~~~~vv~~-s~~~~~~~~~l~~~~~~~g~~~  111 (289)
T 2cvz_A           67 REVYEVAEALYPYLREGTYWVDA-TSGEPEASRRLAERLREKGVTY  111 (289)
T ss_dssp             HHHHHHHHHHTTTCCTTEEEEEC-SCCCHHHHHHHHHHHHTTTEEE
T ss_pred             HHHHHHHHHHHhhCCCCCEEEEC-CCCCHHHHHHHHHHHHHcCCEE
Confidence             3567778888889888765543 3333344455555555556443

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=89.58  E-value=0.31  Score=42.15  Aligned_cols=95  Identities=17%  Similarity=0.277  Sum_probs=52.9

Q ss_pred             CCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           76 NLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        76 ~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      +.+|+=+|+| .|......++.. +++|+++|.+++.++.+++...    ..+.....+..++....   ..+|+|+...
T Consensus       167 ~~~VlViGaGgvG~~aa~~a~~~-Ga~V~v~dr~~~r~~~~~~~~~----~~~~~~~~~~~~~~~~~---~~~DvVI~~~  238 (361)
T 1pjc_A          167 PGKVVILGGGVVGTEAAKMAVGL-GAQVQIFDINVERLSYLETLFG----SRVELLYSNSAEIETAV---AEADLLIGAV  238 (361)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHG----GGSEEEECCHHHHHHHH---HTCSEEEECC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHhhC----ceeEeeeCCHHHHHHHH---cCCCEEEECC
Confidence            5899999985 233333444444 4599999999987776654332    12333322222221111   3589998643


Q ss_pred             cc-c---HHHHHHHHccCcccCeEEEEE
Q 026122          155 VA-E---MRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       155 ~~-~---~~~~l~~~~~~LkpgG~l~~~  178 (243)
                      .. .   ..-+.+...+.+++||.++.+
T Consensus       239 ~~~~~~~~~li~~~~~~~~~~g~~ivdv  266 (361)
T 1pjc_A          239 LVPGRRAPILVPASLVEQMRTGSVIVDV  266 (361)
T ss_dssp             CCTTSSCCCCBCHHHHTTSCTTCEEEET
T ss_pred             CcCCCCCCeecCHHHHhhCCCCCEEEEE
Confidence            21 1   011134455778999987654

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=89.57  E-value=1  Score=36.59  Aligned_cols=103  Identities=18%  Similarity=0.118  Sum_probs=61.5

Q ss_pred             CCeEEEEcCC-CChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCc-C------CC
Q 026122           76 NLKLVDVGTG-AGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-F------RE  145 (243)
Q Consensus        76 ~~~VLDiGcG-~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~-~------~~  145 (243)
                      ++++|=.|++ +|.++..+++.+  .+++|++++.+++..+.+++..+..+  ++.++.+|+.+...... .      .+
T Consensus         8 ~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~~~g   85 (261)
T 2wyu_A            8 GKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALG--GALLFRADVTQDEELDALFAGVKEAFG   85 (261)
T ss_dssp             TCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHHHHHTT--CCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CcEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            6789999986 255665665533  36899999998752223333333333  36788888876431100 0      03


Q ss_pred             CceEEEEcCc-c------------c--------------HHHHHHHHccCcccCeEEEEEeC
Q 026122          146 QYDVAVARAV-A------------E--------------MRILAEYCLPLVRVGGLFVAAKG  180 (243)
Q Consensus       146 ~fD~I~~~~~-~------------~--------------~~~~l~~~~~~LkpgG~l~~~~~  180 (243)
                      ..|+++.++- .            +              ...+.+.+.+.++.+|+++.+.+
T Consensus        86 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS  147 (261)
T 2wyu_A           86 GLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTY  147 (261)
T ss_dssp             SEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEEC
T ss_pred             CCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhccCCEEEEEec
Confidence            6899998751 0            1              12345566677766788887653

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=89.51  E-value=1.3  Score=36.30  Aligned_cols=77  Identities=12%  Similarity=0.024  Sum_probs=50.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCC------------HHHHHHHHHHHHHcCCCCEEEEEccccccccCC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESM------------NKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV  141 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s------------~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~  141 (243)
                      ++++|=.|++.| ++..+++.+  .+++|+++|.+            ++.++...+..+..+. ++.++.+|+.+.....
T Consensus        13 gk~vlVTGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~v~   90 (278)
T 3sx2_A           13 GKVAFITGAARG-QGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGS-RIVARQADVRDRESLS   90 (278)
T ss_dssp             TCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTC-CEEEEECCTTCHHHHH
T ss_pred             CCEEEEECCCCh-HHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcCC-eEEEEeCCCCCHHHHH
Confidence            678898887655 444555432  47899999987            6666555555555543 5889999987643110


Q ss_pred             c-------CCCCceEEEEcC
Q 026122          142 S-------FREQYDVAVARA  154 (243)
Q Consensus       142 ~-------~~~~fD~I~~~~  154 (243)
                      .       ..++.|+++.++
T Consensus        91 ~~~~~~~~~~g~id~lv~nA  110 (278)
T 3sx2_A           91 AALQAGLDELGRLDIVVANA  110 (278)
T ss_dssp             HHHHHHHHHHCCCCEEEECC
T ss_pred             HHHHHHHHHcCCCCEEEECC
Confidence            0       013789999875

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=89.40  E-value=0.91  Score=37.07  Aligned_cols=77  Identities=17%  Similarity=0.035  Sum_probs=51.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHH-cCCCCEEEEEccccccccCCc-------CCC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSL-TQLLNVQIVRGRAETLGKDVS-------FRE  145 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~-~~~~~v~~~~~d~~~~~~~~~-------~~~  145 (243)
                      +++||=.|++.| ++..+++.+  .+++|+.++.+++.++.+.+.++. .+ .++.++.+|+.+......       ..+
T Consensus        20 ~k~vlVTGas~g-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   97 (266)
T 4egf_A           20 GKRALITGATKG-IGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFG-TDVHTVAIDLAEPDAPAELARRAAEAFG   97 (266)
T ss_dssp             TCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHC-CCEEEEECCTTSTTHHHHHHHHHHHHHT
T ss_pred             CCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcC-CcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            678888887665 444555432  468999999999877766555544 33 358899999877532100       013


Q ss_pred             CceEEEEcC
Q 026122          146 QYDVAVARA  154 (243)
Q Consensus       146 ~fD~I~~~~  154 (243)
                      ..|+++.++
T Consensus        98 ~id~lv~nA  106 (266)
T 4egf_A           98 GLDVLVNNA  106 (266)
T ss_dssp             SCSEEEEEC
T ss_pred             CCCEEEECC
Confidence            789999864

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=89.33  E-value=1.6  Score=36.31  Aligned_cols=103  Identities=15%  Similarity=0.006  Sum_probs=65.4

Q ss_pred             CCeEEEEcCCC-ChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCc-------CCC
Q 026122           76 NLKLVDVGTGA-GLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-------FRE  145 (243)
Q Consensus        76 ~~~VLDiGcG~-G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~-------~~~  145 (243)
                      ++++|=.|+++ ..++..+++.+  .+++|+.+|.+++..+.+++..+..+  .+.++.+|+.+......       ..+
T Consensus        30 ~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~~g  107 (296)
T 3k31_A           30 GKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESLG--VKLTVPCDVSDAESVDNMFKVLAEEWG  107 (296)
T ss_dssp             TCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHHT--CCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcC--CeEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            67889999864 23444444432  47899999999876666665555544  35788888876431100       014


Q ss_pred             CceEEEEcCc--------c--------c-----------HHHHHHHHccCcccCeEEEEEeC
Q 026122          146 QYDVAVARAV--------A--------E-----------MRILAEYCLPLVRVGGLFVAAKG  180 (243)
Q Consensus       146 ~fD~I~~~~~--------~--------~-----------~~~~l~~~~~~LkpgG~l~~~~~  180 (243)
                      ..|+++.++-        .        +           ...+.+.+.+.++.+|.++.+.+
T Consensus       108 ~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS  169 (296)
T 3k31_A          108 SLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSY  169 (296)
T ss_dssp             CCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEEC
T ss_pred             CCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEe
Confidence            6899998751        0        1           23355666777778999887763

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=89.26  E-value=0.93  Score=36.85  Aligned_cols=103  Identities=17%  Similarity=0.118  Sum_probs=64.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEE-eCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCc-------CCC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLL-ESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-------FRE  145 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~v-D~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~-------~~~  145 (243)
                      ++++|=.|++.|. +..+++.+  .+++|+.+ +.+++..+.+.+.++..+. ++.++.+|+.+......       ..+
T Consensus         8 ~k~vlVTGas~GI-G~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~~g   85 (259)
T 3edm_A            8 NRTIVVAGAGRDI-GRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLGR-SALAIKADLTNAAEVEAAISAAADKFG   85 (259)
T ss_dssp             TCEEEEETTTSHH-HHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTTTS-CCEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCEEEEECCCchH-HHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence            6788988877664 44555432  46899988 6777666555555554443 47888999876431100       003


Q ss_pred             CceEEEEcCc-c------------c-----------HHHHHHHHccCcccCeEEEEEeC
Q 026122          146 QYDVAVARAV-A------------E-----------MRILAEYCLPLVRVGGLFVAAKG  180 (243)
Q Consensus       146 ~fD~I~~~~~-~------------~-----------~~~~l~~~~~~LkpgG~l~~~~~  180 (243)
                      +.|+++.++- .            +           .-.+.+.+.+.++++|.++.+.+
T Consensus        86 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS  144 (259)
T 3edm_A           86 EIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFSS  144 (259)
T ss_dssp             SEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             CCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcC
Confidence            6899998641 0            0           23455667777777888877653

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=89.22  E-value=2.6  Score=30.01  Aligned_cols=95  Identities=14%  Similarity=0.161  Sum_probs=52.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC-cCCCCceEEEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-SFREQYDVAVA  152 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-~~~~~fD~I~~  152 (243)
                      +.+|+=+|+  |.++..++...  .+.+|+.+|.+++.++.+++   ..+   +.++.+|..+..... ..-..+|+|+.
T Consensus         4 ~m~i~IiG~--G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~---~~~---~~~~~~d~~~~~~l~~~~~~~~d~vi~   75 (140)
T 1lss_A            4 GMYIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASA---EID---ALVINGDCTKIKTLEDAGIEDADMYIA   75 (140)
T ss_dssp             -CEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH---HCS---SEEEESCTTSHHHHHHTTTTTCSEEEE
T ss_pred             CCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHH---hcC---cEEEEcCCCCHHHHHHcCcccCCEEEE
Confidence            467888876  66666665432  35799999999875544332   223   456667664321100 00146899987


Q ss_pred             cCcc-cHHHHHHHHccCcccCeEEEEEe
Q 026122          153 RAVA-EMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       153 ~~~~-~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      .... .....+..+.+.+.++ .+++..
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~-~ii~~~  102 (140)
T 1lss_A           76 VTGKEEVNLMSSLLAKSYGIN-KTIARI  102 (140)
T ss_dssp             CCSCHHHHHHHHHHHHHTTCC-CEEEEC
T ss_pred             eeCCchHHHHHHHHHHHcCCC-EEEEEe
Confidence            6422 2223333444456665 545433

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=89.20  E-value=0.95  Score=31.39  Aligned_cols=70  Identities=17%  Similarity=0.181  Sum_probs=44.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CC-CEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC--PD-WKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~--~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      ..+|+=+|+  |.++..+++..  .+ .+|+++|.+++.++.+.    .   .++.++..|+.+.......-..+|+|+.
T Consensus         5 ~~~v~I~G~--G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~----~---~~~~~~~~d~~~~~~~~~~~~~~d~vi~   75 (118)
T 3ic5_A            5 RWNICVVGA--GKIGQMIAALLKTSSNYSVTVADHDLAALAVLN----R---MGVATKQVDAKDEAGLAKALGGFDAVIS   75 (118)
T ss_dssp             CEEEEEECC--SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH----T---TTCEEEECCTTCHHHHHHHTTTCSEEEE
T ss_pred             cCeEEEECC--CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH----h---CCCcEEEecCCCHHHHHHHHcCCCEEEE
Confidence            568999998  66666555432  34 78999999987655443    1   2356777777653211011146899998


Q ss_pred             cC
Q 026122          153 RA  154 (243)
Q Consensus       153 ~~  154 (243)
                      ..
T Consensus        76 ~~   77 (118)
T 3ic5_A           76 AA   77 (118)
T ss_dssp             CS
T ss_pred             CC
Confidence            65

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=88.91  E-value=0.71  Score=39.28  Aligned_cols=77  Identities=6%  Similarity=-0.030  Sum_probs=50.0

Q ss_pred             EEEE-EccccccccCCcCCCCceEEEEcC---c--------c----cHHHHHHHHccCcccCeEEEEEeCCCcH-----H
Q 026122          127 VQIV-RGRAETLGKDVSFREQYDVAVARA---V--------A----EMRILAEYCLPLVRVGGLFVAAKGHDPQ-----E  185 (243)
Q Consensus       127 v~~~-~~d~~~~~~~~~~~~~fD~I~~~~---~--------~----~~~~~l~~~~~~LkpgG~l~~~~~~~~~-----~  185 (243)
                      .+++ ++|..+..... ..+++|+|++..   .        .    .+...+..+.++|+|||.+++..+....     .
T Consensus        39 ~~l~i~gD~l~~L~~l-~~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~~~~~~~~~~~~  117 (319)
T 1eg2_A           39 RHVYDVCDCLDTLAKL-PDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQYQGEAGSG  117 (319)
T ss_dssp             EEEEEECCHHHHHHTS-CTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSCCCCCTTBC
T ss_pred             ceEEECCcHHHHHHhC-ccCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEEcCcccccccccc
Confidence            6778 99987643211 136899999953   1        1    2467778889999999999998765433     1


Q ss_pred             HHHHHHHHHHHhC-CeeeEE
Q 026122          186 EVKNSERAVQLMG-ASLLQL  204 (243)
Q Consensus       186 ~~~~~~~~l~~~g-~~~~~~  204 (243)
                      .+..+...+...| +.....
T Consensus       118 ~l~~l~~~i~~~G~~~~~~~  137 (319)
T 1eg2_A          118 DLISIISHMRQNSKMLLANL  137 (319)
T ss_dssp             CHHHHHHHHHHHCCCEEEEE
T ss_pred             cHHHHHHHHhCcccceeEEE
Confidence            2234455556667 765543

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=88.90  E-value=0.89  Score=36.42  Aligned_cols=77  Identities=12%  Similarity=0.019  Sum_probs=50.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcC-------CCC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSF-------REQ  146 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~-------~~~  146 (243)
                      +++||=.|+ +|.+|..+++..  .+++|+++|.++...+...+.++..+. ++.++.+|+.+.......       .+.
T Consensus        11 ~~~vlVtGa-sggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~   88 (255)
T 1fmc_A           11 GKCAIITGA-GAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGG-QAFACRCDITSEQELSALADFAISKLGK   88 (255)
T ss_dssp             TCEEEETTT-TSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCEEEEECC-ccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhCC-ceEEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence            567877775 566666666543  468999999998876655555554442 588888998764211000       036


Q ss_pred             ceEEEEcC
Q 026122          147 YDVAVARA  154 (243)
Q Consensus       147 fD~I~~~~  154 (243)
                      .|+|+.++
T Consensus        89 ~d~vi~~A   96 (255)
T 1fmc_A           89 VDILVNNA   96 (255)
T ss_dssp             CCEEEECC
T ss_pred             CCEEEECC
Confidence            89999864

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=88.85  E-value=1.6  Score=34.63  Aligned_cols=77  Identities=19%  Similarity=0.074  Sum_probs=50.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHH-HcCCCCEEEEEccccccccCCc-C------CC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVS-LTQLLNVQIVRGRAETLGKDVS-F------RE  145 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~-~~~~~~v~~~~~d~~~~~~~~~-~------~~  145 (243)
                      ++++|=.|++.| ++..+++.+  .+++|+.++.+++.++.+.+... ..+ .++.++.+|+.+...... .      .+
T Consensus         2 ~k~vlITGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~~g   79 (235)
T 3l77_A            2 MKVAVITGASRG-IGEAIARALARDGYALALGARSVDRLEKIAHELMQEQG-VEVFYHHLDVSKAESVEEFSKKVLERFG   79 (235)
T ss_dssp             CCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHC-CCEEEEECCTTCHHHHHHHCC-HHHHHS
T ss_pred             CCEEEEECCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcC-CeEEEEEeccCCHHHHHHHHHHHHHhcC
Confidence            567888886554 555665543  46899999999887766555544 334 358899999876431100 0      03


Q ss_pred             CceEEEEcC
Q 026122          146 QYDVAVARA  154 (243)
Q Consensus       146 ~fD~I~~~~  154 (243)
                      +.|+++.++
T Consensus        80 ~id~li~~A   88 (235)
T 3l77_A           80 DVDVVVANA   88 (235)
T ss_dssp             SCSEEEECC
T ss_pred             CCCEEEECC
Confidence            689999864

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=88.84  E-value=1.3  Score=36.87  Aligned_cols=103  Identities=14%  Similarity=0.112  Sum_probs=64.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCC--HHHHHHHHHHHHHcCCCCEEEEEccccccccCC-------cCC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESM--NKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------SFR  144 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s--~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-------~~~  144 (243)
                      ++++|=.|++.| ++..+++.+  .+++|+.+|.+  +...+.+.+..+..+. ++.++.+|+.+.....       ...
T Consensus        49 ~k~vlVTGas~G-IG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~  126 (294)
T 3r3s_A           49 DRKALVTGGDSG-IGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECGR-KAVLLPGDLSDESFARSLVHKAREAL  126 (294)
T ss_dssp             TCEEEEETTTSH-HHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTTC-CEEECCCCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcCC-cEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            678898887655 455555432  46899999987  3344445555555543 5888888987642110       001


Q ss_pred             CCceEEEEcCcc------------------------cHHHHHHHHccCcccCeEEEEEeC
Q 026122          145 EQYDVAVARAVA------------------------EMRILAEYCLPLVRVGGLFVAAKG  180 (243)
Q Consensus       145 ~~fD~I~~~~~~------------------------~~~~~l~~~~~~LkpgG~l~~~~~  180 (243)
                      +..|+++.++-.                        ....+.+.+.+.++.+|.++.+.+
T Consensus       127 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS  186 (294)
T 3r3s_A          127 GGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSS  186 (294)
T ss_dssp             TCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECC
T ss_pred             CCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECC
Confidence            478999986410                        123455677778888899887653

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=88.79  E-value=2.1  Score=31.59  Aligned_cols=98  Identities=10%  Similarity=0.038  Sum_probs=56.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCC-HHHHHHHHHHHHHcCCCCEEEEEccccccccCCc-CCCCceEEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESM-NKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-FREQYDVAV  151 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s-~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~-~~~~fD~I~  151 (243)
                      ..+|+=+|+  |..+..+++..  .+.+|+.+|.+ ++..+..+...   . .++.++.+|..+...... .-...|+|+
T Consensus         3 ~~~vlI~G~--G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~---~-~~~~~i~gd~~~~~~l~~a~i~~ad~vi   76 (153)
T 1id1_A            3 KDHFIVCGH--SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRL---G-DNADVIPGDSNDSSVLKKAGIDRCRAIL   76 (153)
T ss_dssp             CSCEEEECC--SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHH---C-TTCEEEESCTTSHHHHHHHTTTTCSEEE
T ss_pred             CCcEEEECC--CHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhh---c-CCCeEEEcCCCCHHHHHHcChhhCCEEE
Confidence            457777765  77777766543  36789999997 44433333221   1 237888998765321100 015689988


Q ss_pred             EcCc-ccHHHHHHHHccCcccCeEEEEEe
Q 026122          152 ARAV-AEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       152 ~~~~-~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      +... ......+....+.+.|...++...
T Consensus        77 ~~~~~d~~n~~~~~~a~~~~~~~~ii~~~  105 (153)
T 1id1_A           77 ALSDNDADNAFVVLSAKDMSSDVKTVLAV  105 (153)
T ss_dssp             ECSSCHHHHHHHHHHHHHHTSSSCEEEEC
T ss_pred             EecCChHHHHHHHHHHHHHCCCCEEEEEE
Confidence            7543 233344444555566666766544

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=88.38  E-value=0.51  Score=40.88  Aligned_cols=95  Identities=20%  Similarity=0.273  Sum_probs=54.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      +.+|+=+|+  |.++..+++..  -+++|+++|.+++.++.+++   ..+.. +.....+..++....   ..+|+|+..
T Consensus       166 ~~~V~ViGa--G~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~---~~g~~-~~~~~~~~~~l~~~~---~~~DvVi~~  236 (369)
T 2eez_A          166 PASVVILGG--GTVGTNAAKIALGMGAQVTILDVNHKRLQYLDD---VFGGR-VITLTATEANIKKSV---QHADLLIGA  236 (369)
T ss_dssp             CCEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH---HTTTS-EEEEECCHHHHHHHH---HHCSEEEEC
T ss_pred             CCEEEEECC--CHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH---hcCce-EEEecCCHHHHHHHH---hCCCEEEEC
Confidence            689999998  45554444321  35799999999976655432   23432 333222222221111   358999876


Q ss_pred             CcccH----HHHHHHHccCcccCeEEEEEe
Q 026122          154 AVAEM----RILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       154 ~~~~~----~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      .....    .-+.+.+.+.+++||.++.+.
T Consensus       237 ~g~~~~~~~~li~~~~l~~mk~gg~iV~v~  266 (369)
T 2eez_A          237 VLVPGAKAPKLVTRDMLSLMKEGAVIVDVA  266 (369)
T ss_dssp             CC-------CCSCHHHHTTSCTTCEEEECC
T ss_pred             CCCCccccchhHHHHHHHhhcCCCEEEEEe
Confidence            43211    112456677889999876543

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=88.34  E-value=6.9  Score=30.06  Aligned_cols=89  Identities=13%  Similarity=0.081  Sum_probs=54.2

Q ss_pred             eEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCc
Q 026122           78 KLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  155 (243)
Q Consensus        78 ~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~  155 (243)
                      +||=.| |+|.+|..+++..  .+.+|++++.++...+..       . .+++++.+|+.+.... . -..+|+|+..+.
T Consensus         2 kvlVtG-atG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~-------~-~~~~~~~~D~~d~~~~-~-~~~~d~vi~~ag   70 (221)
T 3ew7_A            2 KIGIIG-ATGRAGSRILEEAKNRGHEVTAIVRNAGKITQT-------H-KDINILQKDIFDLTLS-D-LSDQNVVVDAYG   70 (221)
T ss_dssp             EEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHH-------C-SSSEEEECCGGGCCHH-H-HTTCSEEEECCC
T ss_pred             eEEEEc-CCchhHHHHHHHHHhCCCEEEEEEcCchhhhhc-------c-CCCeEEeccccChhhh-h-hcCCCEEEECCc
Confidence            455555 3677776666542  468999999998643321       1 4588999999875431 1 146899998652


Q ss_pred             c----------cHHHHHHHHccCcccCeEEEEEe
Q 026122          156 A----------EMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       156 ~----------~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      .          ....+++.+.+.  ..+++++..
T Consensus        71 ~~~~~~~~~~~~~~~l~~a~~~~--~~~~~v~~S  102 (221)
T 3ew7_A           71 ISPDEAEKHVTSLDHLISVLNGT--VSPRLLVVG  102 (221)
T ss_dssp             SSTTTTTSHHHHHHHHHHHHCSC--CSSEEEEEC
T ss_pred             CCccccchHHHHHHHHHHHHHhc--CCceEEEEe
Confidence            1          124455554443  245666554

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=88.05  E-value=0.61  Score=41.68  Aligned_cols=93  Identities=13%  Similarity=0.105  Sum_probs=53.0

Q ss_pred             eEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHH------------HHc-CCCCEEEEEccccccccCCc
Q 026122           78 KLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAV------------SLT-QLLNVQIVRGRAETLGKDVS  142 (243)
Q Consensus        78 ~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~------------~~~-~~~~v~~~~~d~~~~~~~~~  142 (243)
                      ++-=||+  |.+|..+|...  .+.+|+++|++++.++..++..            ++. .-.++++ ..|..+..    
T Consensus        10 ~~~vIGl--G~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~-ttd~~ea~----   82 (446)
T 4a7p_A           10 RIAMIGT--GYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSF-TTDLAEGV----   82 (446)
T ss_dssp             EEEEECC--SHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEE-ESCHHHHH----
T ss_pred             EEEEEcC--CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEE-ECCHHHHH----
Confidence            4555555  55555555432  3679999999998777654420            000 0012322 23333221    


Q ss_pred             CCCCceEEEEc--Ccc----------cHHHHHHHHccCcccCeEEEEEe
Q 026122          143 FREQYDVAVAR--AVA----------EMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       143 ~~~~fD~I~~~--~~~----------~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                        ...|+|+..  ...          ....+++.+.+.|++|-.++..+
T Consensus        83 --~~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~S  129 (446)
T 4a7p_A           83 --KDADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTKS  129 (446)
T ss_dssp             --TTCSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEECS
T ss_pred             --hcCCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence              357888864  111          26788888889999887665544

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=87.97  E-value=2.1  Score=33.82  Aligned_cols=69  Identities=16%  Similarity=0.063  Sum_probs=45.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCE-EEEEccccccccCCcCCCCceEEEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNV-QIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      +++||=.|+ +|.+|..+++..  .+.+|++++.++...+....       .++ +++.+|+.+...  ..-+..|+|+.
T Consensus        21 ~~~ilVtGa-tG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~-------~~~~~~~~~Dl~~~~~--~~~~~~D~vi~   90 (236)
T 3e8x_A           21 GMRVLVVGA-NGKVARYLLSELKNKGHEPVAMVRNEEQGPELRE-------RGASDIVVANLEEDFS--HAFASIDAVVF   90 (236)
T ss_dssp             CCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH-------TTCSEEEECCTTSCCG--GGGTTCSEEEE
T ss_pred             CCeEEEECC-CChHHHHHHHHHHhCCCeEEEEECChHHHHHHHh-------CCCceEEEcccHHHHH--HHHcCCCEEEE
Confidence            778888875 566776666543  46899999999875443221       147 889999862111  11157999998


Q ss_pred             cC
Q 026122          153 RA  154 (243)
Q Consensus       153 ~~  154 (243)
                      ++
T Consensus        91 ~a   92 (236)
T 3e8x_A           91 AA   92 (236)
T ss_dssp             CC
T ss_pred             CC
Confidence            65

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=87.92  E-value=4.7  Score=33.46  Aligned_cols=112  Identities=14%  Similarity=0.124  Sum_probs=64.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIA--CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~--~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      ..+|.=||+|  .++..++..  ..+.+|+++|.+++.++.+.+    .|..   ....+..+..      ...|+|+..
T Consensus         7 ~~~I~iIG~G--~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~----~g~~---~~~~~~~e~~------~~aDvvi~~   71 (303)
T 3g0o_A            7 DFHVGIVGLG--SMGMGAARSCLRAGLSTWGADLNPQACANLLA----EGAC---GAAASAREFA------GVVDALVIL   71 (303)
T ss_dssp             CCEEEEECCS--HHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH----TTCS---EEESSSTTTT------TTCSEEEEC
T ss_pred             CCeEEEECCC--HHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH----cCCc---cccCCHHHHH------hcCCEEEEE
Confidence            3578888765  455445433  246799999999986655433    2332   2233444332      457999985


Q ss_pred             Ccc--cHHHHH---HHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeE
Q 026122          154 AVA--EMRILA---EYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQ  203 (243)
Q Consensus       154 ~~~--~~~~~l---~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~  203 (243)
                      ...  ..+.++   +.+.+.+++|..+ +..+.........+.+.+...|.....
T Consensus        72 vp~~~~~~~v~~~~~~l~~~l~~g~iv-v~~st~~~~~~~~~~~~~~~~g~~~~~  125 (303)
T 3g0o_A           72 VVNAAQVRQVLFGEDGVAHLMKPGSAV-MVSSTISSADAQEIAAALTALNLNMLD  125 (303)
T ss_dssp             CSSHHHHHHHHC--CCCGGGSCTTCEE-EECSCCCHHHHHHHHHHHHTTTCEEEE
T ss_pred             CCCHHHHHHHHhChhhHHhhCCCCCEE-EecCCCCHHHHHHHHHHHHHcCCeEEe
Confidence            432  345554   5556677777664 444444445555566666677765443

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=87.90  E-value=2  Score=35.31  Aligned_cols=77  Identities=10%  Similarity=0.024  Sum_probs=51.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCc-------CCCC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-------FREQ  146 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~-------~~~~  146 (243)
                      +++||=.|++ |.+|..+++.+  .+.+|++++.+++.++...+.++..+..++.++.+|+.+......       ..+.
T Consensus        28 ~k~vlITGas-ggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~  106 (286)
T 1xu9_A           28 GKKVIVTGAS-KGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMGG  106 (286)
T ss_dssp             TCEEEESSCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHHTS
T ss_pred             CCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence            6788888865 45565665432  468999999999877766655555554458889999876321100       0036


Q ss_pred             ceEEEEc
Q 026122          147 YDVAVAR  153 (243)
Q Consensus       147 fD~I~~~  153 (243)
                      .|+++.+
T Consensus       107 iD~li~n  113 (286)
T 1xu9_A          107 LDMLILN  113 (286)
T ss_dssp             CSEEEEC
T ss_pred             CCEEEEC
Confidence            8999976

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=87.88  E-value=1.8  Score=35.06  Aligned_cols=74  Identities=15%  Similarity=0.027  Sum_probs=47.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC-------cCCCC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------SFREQ  146 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-------~~~~~  146 (243)
                      ++++|=.|++.| ++..+++.+  .+++|+.+|.+++..+...+   ..+ .++.++.+|+.+.....       ...+.
T Consensus         8 ~k~vlVTGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~---~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   82 (259)
T 4e6p_A            8 GKSALITGSARG-IGRAFAEAYVREGATVAIADIDIERARQAAA---EIG-PAAYAVQMDVTRQDSIDAAIAATVEHAGG   82 (259)
T ss_dssp             TCEEEEETCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH---HHC-TTEEEEECCTTCHHHHHHHHHHHHHHSSS
T ss_pred             CCEEEEECCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH---HhC-CCceEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence            678888886654 555555432  46899999999875544333   333 24788899987643110       00137


Q ss_pred             ceEEEEcC
Q 026122          147 YDVAVARA  154 (243)
Q Consensus       147 fD~I~~~~  154 (243)
                      .|+++.++
T Consensus        83 id~lv~~A   90 (259)
T 4e6p_A           83 LDILVNNA   90 (259)
T ss_dssp             CCEEEECC
T ss_pred             CCEEEECC
Confidence            89999874

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=87.78  E-value=1.3  Score=36.13  Aligned_cols=103  Identities=14%  Similarity=0.060  Sum_probs=62.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHH---HHHHHHHHHHHcCCCCEEEEEccccccccCCc-------C
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNK---RCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-------F  143 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~---~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~-------~  143 (243)
                      ++++|=.|++.| ++..+++.+  .+++|+.++.+..   .++.+.+.++..+ .++.++.+|+.+......       .
T Consensus        11 ~k~vlVTGas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~   88 (262)
T 3ksu_A           11 NKVIVIAGGIKN-LGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQG-AKVALYQSDLSNEEEVAKLFDFAEKE   88 (262)
T ss_dssp             TCEEEEETCSSH-HHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTTT-CEEEEEECCCCSHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCch-HHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhcC-CcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            678888887766 555666543  4689999876543   3333333333333 248889999876431100       0


Q ss_pred             CCCceEEEEcCc------------cc-----------HHHHHHHHccCcccCeEEEEEeC
Q 026122          144 REQYDVAVARAV------------AE-----------MRILAEYCLPLVRVGGLFVAAKG  180 (243)
Q Consensus       144 ~~~fD~I~~~~~------------~~-----------~~~~l~~~~~~LkpgG~l~~~~~  180 (243)
                      .++.|+++.++-            .+           ...+.+.+.+.++++|.++.+.+
T Consensus        89 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS  148 (262)
T 3ksu_A           89 FGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIAT  148 (262)
T ss_dssp             HCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEec
Confidence            146899998741            01           23355666777788898887654

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=87.75  E-value=5.7  Score=31.72  Aligned_cols=77  Identities=14%  Similarity=0.149  Sum_probs=45.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCE-EEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcccccc-ccCCc-------CC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC--PDWK-VTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETL-GKDVS-------FR  144 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~--~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-~~~~~-------~~  144 (243)
                      +++||=.|+ +|.++..+++.+  .+.+ |+.++.++.. +.+++..+..+-.++.++.+|+.+. .....       ..
T Consensus         5 ~k~vlVtGa-s~gIG~~~a~~l~~~G~~~v~~~~r~~~~-~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   82 (254)
T 1sby_A            5 NKNVIFVAA-LGGIGLDTSRELVKRNLKNFVILDRVENP-TALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQL   82 (254)
T ss_dssp             TCEEEEETT-TSHHHHHHHHHHHHTCCSEEEEEESSCCH-HHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred             CcEEEEECC-CChHHHHHHHHHHHCCCcEEEEEecCchH-HHHHHHHHhCCCceEEEEEEecCCChHHHHHHHHHHHHhc
Confidence            678888886 566776776543  3565 9999988632 2222222222223588889998764 21000       00


Q ss_pred             CCceEEEEcC
Q 026122          145 EQYDVAVARA  154 (243)
Q Consensus       145 ~~fD~I~~~~  154 (243)
                      +..|+++.++
T Consensus        83 g~id~lv~~A   92 (254)
T 1sby_A           83 KTVDILINGA   92 (254)
T ss_dssp             SCCCEEEECC
T ss_pred             CCCCEEEECC
Confidence            3689999875

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=87.62  E-value=1.5  Score=35.78  Aligned_cols=103  Identities=17%  Similarity=0.153  Sum_probs=63.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeC-CHHHHHHHHHHHHHcCCCCEEEEEccccccccCCc-------CCC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLES-MNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-------FRE  145 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~-s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~-------~~~  145 (243)
                      ++++|=.|++.| ++..+++.+  .+++|+.++. +.+..+...+.++..+. ++.++.+|+.+...-..       ..+
T Consensus        18 ~k~~lVTGas~g-IG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~~g   95 (270)
T 3is3_A           18 GKVALVTGSGRG-IGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALGS-DAIAIKADIRQVPEIVKLFDQAVAHFG   95 (270)
T ss_dssp             TCEEEESCTTSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCCch-HHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            678888887765 444555432  4689999876 45555555555555543 58889999877431100       013


Q ss_pred             CceEEEEcCc------------cc-----------HHHHHHHHccCcccCeEEEEEeC
Q 026122          146 QYDVAVARAV------------AE-----------MRILAEYCLPLVRVGGLFVAAKG  180 (243)
Q Consensus       146 ~fD~I~~~~~------------~~-----------~~~~l~~~~~~LkpgG~l~~~~~  180 (243)
                      +.|+++.++-            .+           .-.+.+.+.+.++++|.++...+
T Consensus        96 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS  153 (270)
T 3is3_A           96 HLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSS  153 (270)
T ss_dssp             CCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence            6899998641            01           22345566677777899887664

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=87.61  E-value=3.1  Score=35.44  Aligned_cols=112  Identities=15%  Similarity=0.017  Sum_probs=66.7

Q ss_pred             CeEEEEcCCC-Ch-HHHHHHHHCCCCEEEE-EeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122           77 LKLVDVGTGA-GL-PGLVLAIACPDWKVTL-LESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        77 ~~VLDiGcG~-G~-~~~~la~~~~~~~v~~-vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      .+|.=||||. |. .-+......++.++++ +|.+++.   +++.+++.++.   .. .|.+++...    ...|+|+..
T Consensus        28 ~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~---~~~~a~~~g~~---~~-~~~~~ll~~----~~~D~V~i~   96 (350)
T 3rc1_A           28 IRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDR---AKRFTERFGGE---PV-EGYPALLER----DDVDAVYVP   96 (350)
T ss_dssp             EEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHH---HHHHHHHHCSE---EE-ESHHHHHTC----TTCSEEEEC
T ss_pred             eEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHH---HHHHHHHcCCC---Cc-CCHHHHhcC----CCCCEEEEC
Confidence            4788899973 32 1112223456788875 4998764   44455555543   33 677776432    468999975


Q ss_pred             Cccc-HHHHHHHHccCcccCeEEEEEeC-CCcHHHHHHHHHHHHHhCCeee
Q 026122          154 AVAE-MRILAEYCLPLVRVGGLFVAAKG-HDPQEEVKNSERAVQLMGASLL  202 (243)
Q Consensus       154 ~~~~-~~~~l~~~~~~LkpgG~l~~~~~-~~~~~~~~~~~~~l~~~g~~~~  202 (243)
                      .... ..++   +...|+.|-.+++.++ ....++..++.+..++.|..+.
T Consensus        97 tp~~~h~~~---~~~al~aGk~Vl~EKP~a~~~~ea~~l~~~a~~~g~~~~  144 (350)
T 3rc1_A           97 LPAVLHAEW---IDRALRAGKHVLAEKPLTTDRPQAERLFAVARERGLLLM  144 (350)
T ss_dssp             CCGGGHHHH---HHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCEE
T ss_pred             CCcHHHHHH---HHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCEEE
Confidence            4322 2222   3345556666666665 4556777888888888886553

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=87.58  E-value=1.2  Score=36.45  Aligned_cols=103  Identities=11%  Similarity=-0.027  Sum_probs=61.5

Q ss_pred             CCeEEEEcCC-CChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC-------cCCC
Q 026122           76 NLKLVDVGTG-AGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------SFRE  145 (243)
Q Consensus        76 ~~~VLDiGcG-~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-------~~~~  145 (243)
                      +++||=.|++ +|.++..+++.+  .+++|+.++.+++..+.+++..+..+  ++.++.+|+.+.....       ...+
T Consensus         6 ~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~~~g   83 (275)
T 2pd4_A            6 GKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQELN--SPYVYELDVSKEEHFKSLYNSVKKDLG   83 (275)
T ss_dssp             TCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHHHHHHTT--CCCEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            6789999986 355666666543  46899999998752222333323333  3678888887632110       0014


Q ss_pred             CceEEEEcCc--------c--------c-----------HHHHHHHHccCcccCeEEEEEeC
Q 026122          146 QYDVAVARAV--------A--------E-----------MRILAEYCLPLVRVGGLFVAAKG  180 (243)
Q Consensus       146 ~fD~I~~~~~--------~--------~-----------~~~~l~~~~~~LkpgG~l~~~~~  180 (243)
                      +.|+++.++-        .        +           ...+.+.+.+.++++|+++.+.+
T Consensus        84 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS  145 (275)
T 2pd4_A           84 SLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSY  145 (275)
T ss_dssp             CEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred             CCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEec
Confidence            6899998751        0        0           12344566677777888887663

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=87.36  E-value=4.6  Score=35.10  Aligned_cols=77  Identities=17%  Similarity=0.168  Sum_probs=47.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHH---HHHHHHHHHHHc--------CCCCEEEEEccccccccCCc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNK---RCVFLEHAVSLT--------QLLNVQIVRGRAETLGKDVS  142 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~---~~~~a~~~~~~~--------~~~~v~~~~~d~~~~~~~~~  142 (243)
                      +.+||=.|+ +|.+|..+++..  .+.+|++++.++.   ..+...+..+..        ...+++++.+|+.+..... 
T Consensus        69 ~~~vlVTGa-tG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~-  146 (427)
T 4f6c_A           69 LGNTLLTGA-TGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDVV-  146 (427)
T ss_dssp             CEEEEEECT-TSHHHHHHHHHHTTTEEEEEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC---CCCC-
T ss_pred             CCEEEEecC-CcHHHHHHHHHHHcCCCEEEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCCCCCcccCC-
Confidence            457887774 677877777653  3579999998876   333333333221        1135899999998743221 


Q ss_pred             CCCCceEEEEcC
Q 026122          143 FREQYDVAVARA  154 (243)
Q Consensus       143 ~~~~fD~I~~~~  154 (243)
                      ....+|+|+.++
T Consensus       147 ~~~~~d~Vih~A  158 (427)
T 4f6c_A          147 LPENMDTIIHAG  158 (427)
T ss_dssp             CSSCCSEEEECC
T ss_pred             CcCCCCEEEECC
Confidence            225799999764

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=87.35  E-value=1.7  Score=34.29  Aligned_cols=92  Identities=13%  Similarity=0.093  Sum_probs=53.8

Q ss_pred             eEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCc-CCCCceEEEEcC
Q 026122           78 KLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-FREQYDVAVARA  154 (243)
Q Consensus        78 ~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~-~~~~fD~I~~~~  154 (243)
                      +|+=+|+  |.+|..+++..  .+.+|+.+|.+++.++...   +..   ++.++.+|..+...... .-..+|+|++..
T Consensus         2 ~iiIiG~--G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~---~~~---~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~   73 (218)
T 3l4b_C            2 KVIIIGG--ETTAYYLARSMLSRKYGVVIINKDRELCEEFA---KKL---KATIIHGDGSHKEILRDAEVSKNDVVVILT   73 (218)
T ss_dssp             CEEEECC--HHHHHHHHHHHHHTTCCEEEEESCHHHHHHHH---HHS---SSEEEESCTTSHHHHHHHTCCTTCEEEECC
T ss_pred             EEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHH---HHc---CCeEEEcCCCCHHHHHhcCcccCCEEEEec
Confidence            4555564  77777777543  4679999999998665433   222   35788898876321100 015689998754


Q ss_pred             ccc-HHHHHHHHccCcccCeEEEE
Q 026122          155 VAE-MRILAEYCLPLVRVGGLFVA  177 (243)
Q Consensus       155 ~~~-~~~~l~~~~~~LkpgG~l~~  177 (243)
                      ..+ ...++....+.+.+...++.
T Consensus        74 ~~d~~n~~~~~~a~~~~~~~~iia   97 (218)
T 3l4b_C           74 PRDEVNLFIAQLVMKDFGVKRVVS   97 (218)
T ss_dssp             SCHHHHHHHHHHHHHTSCCCEEEE
T ss_pred             CCcHHHHHHHHHHHHHcCCCeEEE
Confidence            332 33334444444555556554

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=87.31  E-value=0.24  Score=42.42  Aligned_cols=94  Identities=13%  Similarity=0.071  Sum_probs=53.1

Q ss_pred             CCeEEEEcCCCChH---HHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccC---CcCCCCceE
Q 026122           76 NLKLVDVGTGAGLP---GLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD---VSFREQYDV  149 (243)
Q Consensus        76 ~~~VLDiGcG~G~~---~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~---~~~~~~fD~  149 (243)
                      +.+++=|-.|+|.+   ++.+|+.. +++|+++|.+++..+.++    ++|..  .++..+-.++...   ......+|+
T Consensus       164 g~~~vli~gg~g~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~----~~Ga~--~~~~~~~~~~~~~v~~~~~~~g~D~  236 (349)
T 3pi7_A          164 GEKAFVMTAGASQLCKLIIGLAKEE-GFRPIVTVRRDEQIALLK----DIGAA--HVLNEKAPDFEATLREVMKAEQPRI  236 (349)
T ss_dssp             CCSEEEESSTTSHHHHHHHHHHHHH-TCEEEEEESCGGGHHHHH----HHTCS--EEEETTSTTHHHHHHHHHHHHCCCE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHH----HcCCC--EEEECCcHHHHHHHHHHhcCCCCcE
Confidence            43334454444444   45555554 569999999998777665    35543  2332222221100   000036999


Q ss_pred             EEEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122          150 AVARAVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       150 I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      |+-..-..   .++.+.+.|+++|+++..-
T Consensus       237 vid~~g~~---~~~~~~~~l~~~G~iv~~G  263 (349)
T 3pi7_A          237 FLDAVTGP---LASAIFNAMPKRARWIIYG  263 (349)
T ss_dssp             EEESSCHH---HHHHHHHHSCTTCEEEECC
T ss_pred             EEECCCCh---hHHHHHhhhcCCCEEEEEe
Confidence            99754332   2366778899999988754

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=87.26  E-value=2.5  Score=34.16  Aligned_cols=78  Identities=17%  Similarity=0.083  Sum_probs=52.5

Q ss_pred             CCeEEEEcC-CCChHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCc-------CCC
Q 026122           76 NLKLVDVGT-GAGLPGLVLAIA--CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-------FRE  145 (243)
Q Consensus        76 ~~~VLDiGc-G~G~~~~~la~~--~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~-------~~~  145 (243)
                      +++||=.|+ |+|. +..+++.  ..+++|+.+|.+++..+.+.+.++..+-.++.++.+|+.+......       ..+
T Consensus        22 ~k~vlITGasg~GI-G~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  100 (266)
T 3o38_A           22 GKVVLVTAAAGTGI-GSTTARRALLEGADVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTVEKAG  100 (266)
T ss_dssp             TCEEEESSCSSSSH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCch-HHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHHHHHhC
Confidence            678888887 6665 3334332  2468999999999887776666655554569999999877431100       013


Q ss_pred             CceEEEEcC
Q 026122          146 QYDVAVARA  154 (243)
Q Consensus       146 ~fD~I~~~~  154 (243)
                      +.|+++.++
T Consensus       101 ~id~li~~A  109 (266)
T 3o38_A          101 RLDVLVNNA  109 (266)
T ss_dssp             CCCEEEECC
T ss_pred             CCcEEEECC
Confidence            689999874

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=87.12  E-value=4.6  Score=31.42  Aligned_cols=95  Identities=15%  Similarity=0.106  Sum_probs=54.2

Q ss_pred             CeEEEEcCCCChHHHHHHHH---CCCCEEEEEeCCHH-HHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEE
Q 026122           77 LKLVDVGTGAGLPGLVLAIA---CPDWKVTLLESMNK-RCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        77 ~~VLDiGcG~G~~~~~la~~---~~~~~v~~vD~s~~-~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      ++||=.|+ +|.+|..+++.   ..+.+|++++.+++ .++...    . ...+++++.+|+.+.......-...|+|+.
T Consensus         6 k~vlVtGa-sg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~----~-~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~   79 (221)
T 3r6d_A            6 XYITILGA-AGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEI----I-DHERVTVIEGSFQNPGXLEQAVTNAEVVFV   79 (221)
T ss_dssp             SEEEEEST-TSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHH----H-TSTTEEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred             EEEEEEeC-CcHHHHHHHHHHHhcCCceEEEEecCccccchhhc----c-CCCceEEEECCCCCHHHHHHHHcCCCEEEE
Confidence            35777774 56666565543   25789999999976 433221    1 123589999999764321111146899998


Q ss_pred             cCcc-cHHHHHHHHccCccc-C-eEEEEEe
Q 026122          153 RAVA-EMRILAEYCLPLVRV-G-GLFVAAK  179 (243)
Q Consensus       153 ~~~~-~~~~~l~~~~~~Lkp-g-G~l~~~~  179 (243)
                      ++.. +..  .+.+.+.++. | |+++.+.
T Consensus        80 ~ag~~n~~--~~~~~~~~~~~~~~~iv~iS  107 (221)
T 3r6d_A           80 GAMESGSD--MASIVKALSRXNIRRVIGVS  107 (221)
T ss_dssp             SCCCCHHH--HHHHHHHHHHTTCCEEEEEE
T ss_pred             cCCCCChh--HHHHHHHHHhcCCCeEEEEe
Confidence            7633 332  3333333332 2 5666555

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=86.93  E-value=3  Score=34.64  Aligned_cols=91  Identities=14%  Similarity=0.142  Sum_probs=54.2

Q ss_pred             CeEEEEcCCCChHHHHHHH--HCCCCEEEEEeCCHHHHHHHHHHHHH-------cCC---------------CCEEEEEc
Q 026122           77 LKLVDVGTGAGLPGLVLAI--ACPDWKVTLLESMNKRCVFLEHAVSL-------TQL---------------LNVQIVRG  132 (243)
Q Consensus        77 ~~VLDiGcG~G~~~~~la~--~~~~~~v~~vD~s~~~~~~a~~~~~~-------~~~---------------~~v~~~~~  132 (243)
                      .+|.=||+|.  ++..+|.  ...+.+|+++|.+++.++.+++.+++       .|.               .++++ ..
T Consensus        16 ~~I~VIG~G~--mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~-~~   92 (302)
T 1f0y_A           16 KHVTVIGGGL--MGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIAT-ST   92 (302)
T ss_dssp             CEEEEECCSH--HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEE-ES
T ss_pred             CEEEEECCCH--HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEE-ec
Confidence            4788888864  3332332  22367999999999988766543321       221               12333 22


Q ss_pred             cccccccCCcCCCCceEEEEcCccc---HHHHHHHHccCcccCeEEE
Q 026122          133 RAETLGKDVSFREQYDVAVARAVAE---MRILAEYCLPLVRVGGLFV  176 (243)
Q Consensus       133 d~~~~~~~~~~~~~fD~I~~~~~~~---~~~~l~~~~~~LkpgG~l~  176 (243)
                      |..+..      ...|+|+.....+   ...+++.+.+.++++..++
T Consensus        93 ~~~~~~------~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~  133 (302)
T 1f0y_A           93 DAASVV------HSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFA  133 (302)
T ss_dssp             CHHHHT------TSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEE
T ss_pred             CHHHhh------cCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEE
Confidence            333211      4589999765433   3677888888888886543

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=86.92  E-value=2.7  Score=35.56  Aligned_cols=112  Identities=11%  Similarity=-0.032  Sum_probs=62.7

Q ss_pred             CCeEEEEcCCC-ChH-HHHHHHHCCCCEEEE-EeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEE
Q 026122           76 NLKLVDVGTGA-GLP-GLVLAIACPDWKVTL-LESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        76 ~~~VLDiGcG~-G~~-~~~la~~~~~~~v~~-vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      -.+|-=||||. |.. .+...+..++.+|++ +|.+++   .+++.+++++..+   ...|++++...    ...|+|+.
T Consensus        23 mirigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~---~a~~~a~~~g~~~---~y~d~~ell~~----~~iDaV~I   92 (350)
T 4had_A           23 MLRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLT---RAREMADRFSVPH---AFGSYEEMLAS----DVIDAVYI   92 (350)
T ss_dssp             CEEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHH---HHHHHHHHHTCSE---EESSHHHHHHC----SSCSEEEE
T ss_pred             ccEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHH---HHHHHHHHcCCCe---eeCCHHHHhcC----CCCCEEEE
Confidence            34788899985 432 123334567888886 699986   4566667777642   34677776432    46899987


Q ss_pred             cCccc-HHHHHHHHccCcccCeEEEEEeCC-CcHHHHHHHHHHHHHhCCe
Q 026122          153 RAVAE-MRILAEYCLPLVRVGGLFVAAKGH-DPQEEVKNSERAVQLMGAS  200 (243)
Q Consensus       153 ~~~~~-~~~~l~~~~~~LkpgG~l~~~~~~-~~~~~~~~~~~~l~~~g~~  200 (243)
                      ..... -.++.   ...|+.|=.+++.++- ...++..++.+..++.|..
T Consensus        93 ~tP~~~H~~~~---~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~  139 (350)
T 4had_A           93 PLPTSQHIEWS---IKAADAGKHVVCEKPLALKAGDIDAVIAARDRNKVV  139 (350)
T ss_dssp             CSCGGGHHHHH---HHHHHTTCEEEECSCCCSSGGGGHHHHHHHHHHTCC
T ss_pred             eCCCchhHHHH---HHHHhcCCEEEEeCCcccchhhHHHHHHHHHHcCCc
Confidence            54322 22222   2233334344554432 3344555555555565543

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=86.90  E-value=9.6  Score=32.05  Aligned_cols=100  Identities=13%  Similarity=0.048  Sum_probs=67.4

Q ss_pred             CeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCC---CCEEEEEccccccccCCc-----C-CCC
Q 026122           77 LKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQL---LNVQIVRGRAETLGKDVS-----F-REQ  146 (243)
Q Consensus        77 ~~VLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~---~~v~~~~~d~~~~~~~~~-----~-~~~  146 (243)
                      ..|++||||-=.-+..+.  .| +.+|+=|| .+..++..++.+...+.   .+..++.+|+.+ .....     + .+.
T Consensus       104 ~QvV~LGaGlDTra~Rl~--~~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d-~~~~~l~~~g~d~~~  179 (310)
T 2uyo_A          104 RQFVILASGLDSRAYRLD--WPTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ-DWPPALRSAGFDPSA  179 (310)
T ss_dssp             CEEEEETCTTCCHHHHSC--CCTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS-CHHHHHHHTTCCTTS
T ss_pred             CeEEEeCCCCCchhhhcc--CCCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHh-hHHHHHHhccCCCCC
Confidence            579999999665433332  24 47999999 69999988888876542   358899999876 21100     0 022


Q ss_pred             ceEEEEcCcc------cHHHHHHHHccCcccCeEEEEEeC
Q 026122          147 YDVAVARAVA------EMRILAEYCLPLVRVGGLFVAAKG  180 (243)
Q Consensus       147 fD~I~~~~~~------~~~~~l~~~~~~LkpgG~l~~~~~  180 (243)
                      .=++++.++.      ....+++.+...+.||+.+++...
T Consensus       180 Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~  219 (310)
T 2uyo_A          180 RTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETS  219 (310)
T ss_dssp             CEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECC
T ss_pred             CEEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEec
Confidence            3455565532      467888888888889999888763

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=86.78  E-value=0.57  Score=50.56  Aligned_cols=100  Identities=10%  Similarity=0.113  Sum_probs=62.4

Q ss_pred             CCCCCeEEEEcC--CCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccc---cCCcCCCCc
Q 026122           73 CNSNLKLVDVGT--GAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLG---KDVSFREQY  147 (243)
Q Consensus        73 ~~~~~~VLDiGc--G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---~~~~~~~~f  147 (243)
                      ++++.+||=.|+  |.|..++.+|+.. +++|++++.+++..+.+++.....+...  ++..+-.++.   ........+
T Consensus      1665 l~~Ge~VLI~gaaGgVG~aAiqlAk~~-Ga~Viat~~s~~k~~~l~~~~~~lga~~--v~~~~~~~~~~~i~~~t~g~Gv 1741 (2512)
T 2vz8_A         1665 MQPGESVLIHSGSGGVGQAAIAIALSR-GCRVFTTVGSAEKRAYLQARFPQLDETC--FANSRDTSFEQHVLRHTAGKGV 1741 (2512)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHCTTCCSTT--EEESSSSHHHHHHHHTTTSCCE
T ss_pred             CCCCCEEEEEeCChHHHHHHHHHHHHc-CCEEEEEeCChhhhHHHHhhcCCCCceE--EecCCCHHHHHHHHHhcCCCCc
Confidence            566899998864  4566777788775 5799999999887666654322233332  2222111110   000001369


Q ss_pred             eEEEEcCcccHHHHHHHHccCcccCeEEEEE
Q 026122          148 DVAVARAVAEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       148 D~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                      |+|+-.. .  ...++...+.|+++|+++.+
T Consensus      1742 DvVld~~-g--~~~l~~~l~~L~~~Gr~V~i 1769 (2512)
T 2vz8_A         1742 DLVLNSL-A--EEKLQASVRCLAQHGRFLEI 1769 (2512)
T ss_dssp             EEEEECC-C--HHHHHHHHTTEEEEEEEEEC
T ss_pred             eEEEECC-C--chHHHHHHHhcCCCcEEEEe
Confidence            9999743 2  45678889999999997754

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=86.43  E-value=6.9  Score=32.82  Aligned_cols=111  Identities=17%  Similarity=0.196  Sum_probs=63.1

Q ss_pred             CCeEEEEcCCCChHHHHHHH--HCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122           76 NLKLVDVGTGAGLPGLVLAI--ACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~--~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      ..+|.=||+|.=  +..++.  ...+.+|+++|.+++.++.+.+    .|   +++ ..+..+..      ...|+|+..
T Consensus        31 ~~~I~iIG~G~m--G~~~a~~l~~~G~~V~~~dr~~~~~~~l~~----~g---~~~-~~~~~e~~------~~aDvVi~~   94 (320)
T 4dll_A           31 ARKITFLGTGSM--GLPMARRLCEAGYALQVWNRTPARAASLAA----LG---ATI-HEQARAAA------RDADIVVSM   94 (320)
T ss_dssp             CSEEEEECCTTT--HHHHHHHHHHTTCEEEEECSCHHHHHHHHT----TT---CEE-ESSHHHHH------TTCSEEEEC
T ss_pred             CCEEEEECccHH--HHHHHHHHHhCCCeEEEEcCCHHHHHHHHH----CC---CEe-eCCHHHHH------hcCCEEEEE
Confidence            458888988743  333332  2246799999999976554332    23   222 23443332      357998875


Q ss_pred             Cc--ccHHHHHH--HHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeE
Q 026122          154 AV--AEMRILAE--YCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQ  203 (243)
Q Consensus       154 ~~--~~~~~~l~--~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~  203 (243)
                      ..  ...+.++.  .+...+++|.. ++..+.........+.+.+...|.....
T Consensus        95 vp~~~~~~~v~~~~~~~~~l~~~~~-vi~~st~~~~~~~~~~~~~~~~g~~~~~  147 (320)
T 4dll_A           95 LENGAVVQDVLFAQGVAAAMKPGSL-FLDMASITPREARDHAARLGALGIAHLD  147 (320)
T ss_dssp             CSSHHHHHHHHTTTCHHHHCCTTCE-EEECSCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCHHHHHHHHcchhHHhhCCCCCE-EEecCCCCHHHHHHHHHHHHHcCCEEEe
Confidence            43  23455554  44556777755 4444444455555666666777765543

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=86.37  E-value=0.46  Score=41.41  Aligned_cols=94  Identities=16%  Similarity=0.171  Sum_probs=52.3

Q ss_pred             CCeEEEEcCCCChHHHHHH---HHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEE
Q 026122           76 NLKLVDVGTGAGLPGLVLA---IACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la---~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      +.+|+=+|+  |.+|..++   +.. +++|+++|.+++.++.+++   ..+.. +.....+..++....   ...|+|+.
T Consensus       168 g~~V~ViG~--G~iG~~~a~~a~~~-Ga~V~~~d~~~~~l~~~~~---~~g~~-~~~~~~~~~~l~~~l---~~aDvVi~  237 (377)
T 2vhw_A          168 PADVVVIGA--GTAGYNAARIANGM-GATVTVLDINIDKLRQLDA---EFCGR-IHTRYSSAYELEGAV---KRADLVIG  237 (377)
T ss_dssp             CCEEEEECC--SHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHH---HTTTS-SEEEECCHHHHHHHH---HHCSEEEE
T ss_pred             CCEEEEECC--CHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHH---hcCCe-eEeccCCHHHHHHHH---cCCCEEEE
Confidence            789999998  45554444   333 5699999999976655443   23332 222221222221110   35899987


Q ss_pred             cCccc----HHHHHHHHccCcccCeEEEEEe
Q 026122          153 RAVAE----MRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       153 ~~~~~----~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      ....+    ..-+.+...+.+||||.++-..
T Consensus       238 ~~~~p~~~t~~li~~~~l~~mk~g~~iV~va  268 (377)
T 2vhw_A          238 AVLVPGAKAPKLVSNSLVAHMKPGAVLVDIA  268 (377)
T ss_dssp             CCCCTTSCCCCCBCHHHHTTSCTTCEEEEGG
T ss_pred             CCCcCCCCCcceecHHHHhcCCCCcEEEEEe
Confidence            43111    1112345567789999876543

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=86.31  E-value=14  Score=30.99  Aligned_cols=112  Identities=11%  Similarity=0.025  Sum_probs=63.4

Q ss_pred             CeEEEEcCCCChHHHHHHHH--CCC-CEEEEEeCCHH---HHHHHHHHHHHcCCCCEEEEEc-cccccccCCcCCCCceE
Q 026122           77 LKLVDVGTGAGLPGLVLAIA--CPD-WKVTLLESMNK---RCVFLEHAVSLTQLLNVQIVRG-RAETLGKDVSFREQYDV  149 (243)
Q Consensus        77 ~~VLDiGcG~G~~~~~la~~--~~~-~~v~~vD~s~~---~~~~a~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~fD~  149 (243)
                      .+|.=||+|  ..+..+|..  ..+ .+|+++|.+++   ..+...+.....|.      .. +..+..      ...|+
T Consensus        25 m~IgvIG~G--~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~------~~~s~~e~~------~~aDv   90 (317)
T 4ezb_A           25 TTIAFIGFG--EAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGV------EPLDDVAGI------ACADV   90 (317)
T ss_dssp             CEEEEECCS--HHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHTTC------EEESSGGGG------GGCSE
T ss_pred             CeEEEECcc--HHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHCCC------CCCCHHHHH------hcCCE
Confidence            578888865  455445443  345 79999999972   11112222233332      22 343332      34799


Q ss_pred             EEEcC-cccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeE
Q 026122          150 AVARA-VAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQ  203 (243)
Q Consensus       150 I~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~  203 (243)
                      |+..- .....+.++.+...+++|..++ ..+.........+.+.+...|.....
T Consensus        91 Vi~avp~~~~~~~~~~i~~~l~~~~ivv-~~st~~p~~~~~~~~~l~~~g~~~~d  144 (317)
T 4ezb_A           91 VLSLVVGAATKAVAASAAPHLSDEAVFI-DLNSVGPDTKALAAGAIATGKGSFVE  144 (317)
T ss_dssp             EEECCCGGGHHHHHHHHGGGCCTTCEEE-ECCSCCHHHHHHHHHHHHTSSCEEEE
T ss_pred             EEEecCCHHHHHHHHHHHhhcCCCCEEE-ECCCCCHHHHHHHHHHHHHcCCeEEe
Confidence            88754 2334555678888898886644 34444445555566666677765443

>2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus}

Probab=86.23  E-value=11  Score=31.54  Aligned_cols=35  Identities=17%  Similarity=0.324  Sum_probs=25.2

Q ss_pred             CCceEEEEcCc------c-----c----HHHHHHHHccCcccCeEEEEEe
Q 026122          145 EQYDVAVARAV------A-----E----MRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       145 ~~fD~I~~~~~------~-----~----~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      +++|+|+++.-      .     +    +.-+++.+.++|+|||.+++-.
T Consensus       205 ~k~DvV~SDMApn~sGh~yqQC~DHarii~Lal~fA~~vLkPGGtfV~Kv  254 (320)
T 2hwk_A          205 PKYDIIFVNVRTPYKYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSIG  254 (320)
T ss_dssp             CCEEEEEEECCCCCCSCHHHHHHHHHHHHHHTHHHHGGGEEEEEEEEEEE
T ss_pred             CcCCEEEEcCCCCCCCccccccchHHHHHHHHHHHHHHhcCCCceEEEEE
Confidence            67999999631      1     1    2236667889999999988755

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=86.19  E-value=3.5  Score=35.06  Aligned_cols=111  Identities=13%  Similarity=0.115  Sum_probs=64.9

Q ss_pred             CCeEEEEcCCCChHHHHHHH---HCCCCEEEE-EeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAI---ACPDWKVTL-LESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~---~~~~~~v~~-vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      ..+|.=||||.  .+...+.   ..++.++++ +|.+++..   ++.++..+..   . ..|.+++...    ...|+|+
T Consensus         5 ~~~vgiiG~G~--~g~~~~~~l~~~~~~~lvav~d~~~~~~---~~~~~~~g~~---~-~~~~~~~l~~----~~~D~V~   71 (354)
T 3db2_A            5 PVGVAAIGLGR--WAYVMADAYTKSEKLKLVTCYSRTEDKR---EKFGKRYNCA---G-DATMEALLAR----EDVEMVI   71 (354)
T ss_dssp             CEEEEEECCSH--HHHHHHHHHTTCSSEEEEEEECSSHHHH---HHHHHHHTCC---C-CSSHHHHHHC----SSCCEEE
T ss_pred             cceEEEEccCH--HHHHHHHHHHhCCCcEEEEEECCCHHHH---HHHHHHcCCC---C-cCCHHHHhcC----CCCCEEE
Confidence            35788899974  3333332   235678764 59998643   4444555553   1 3566665421    4689988


Q ss_pred             EcCcc-cHHHHHHHHccCcccCeEEEEEeC-CCcHHHHHHHHHHHHHhCCeee
Q 026122          152 ARAVA-EMRILAEYCLPLVRVGGLFVAAKG-HDPQEEVKNSERAVQLMGASLL  202 (243)
Q Consensus       152 ~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~-~~~~~~~~~~~~~l~~~g~~~~  202 (243)
                      ..... ...+.   +...|+.|-.+++.++ ....++..++.+..++.|..+.
T Consensus        72 i~tp~~~h~~~---~~~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~~~~~~  121 (354)
T 3db2_A           72 ITVPNDKHAEV---IEQCARSGKHIYVEKPISVSLDHAQRIDQVIKETGVKFL  121 (354)
T ss_dssp             ECSCTTSHHHH---HHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHHCCCEE
T ss_pred             EeCChHHHHHH---HHHHHHcCCEEEEccCCCCCHHHHHHHHHHHHHcCCeEE
Confidence            75432 22222   3345566666666665 3556777777777778776543

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=85.94  E-value=2.4  Score=34.30  Aligned_cols=103  Identities=10%  Similarity=0.015  Sum_probs=59.5

Q ss_pred             CCeEEEEcCCC-ChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC-------cCCC
Q 026122           76 NLKLVDVGTGA-GLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------SFRE  145 (243)
Q Consensus        76 ~~~VLDiGcG~-G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-------~~~~  145 (243)
                      +++||=.|+++ |.++..+++.+  .+++|+.++.++...+.+++..+..+  +..++.+|+.+.....       ...+
T Consensus         9 ~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~~~g   86 (265)
T 1qsg_A            9 GKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLG--SDIVLQCDVAEDASIDTMFAELGKVWP   86 (265)
T ss_dssp             TCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHTT--CCCEEECCTTCHHHHHHHHHHHHTTCS
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHHhcC--CcEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            67888888762 55666666543  46899999998732222333323323  2467788877632100       0014


Q ss_pred             CceEEEEcCc--------------ccH--------------HHHHHHHccCcccCeEEEEEeC
Q 026122          146 QYDVAVARAV--------------AEM--------------RILAEYCLPLVRVGGLFVAAKG  180 (243)
Q Consensus       146 ~fD~I~~~~~--------------~~~--------------~~~l~~~~~~LkpgG~l~~~~~  180 (243)
                      +.|+++.++-              .+.              ..+.+.+.+.++++|+++.+.+
T Consensus        87 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS  149 (265)
T 1qsg_A           87 KFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSY  149 (265)
T ss_dssp             SEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred             CCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEcc
Confidence            6899998751              111              1244556667766788887653

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=85.92  E-value=11  Score=32.11  Aligned_cols=114  Identities=17%  Similarity=0.125  Sum_probs=65.3

Q ss_pred             CCeEEEEcCCCChH-HHHHHHHCCCCEEEE-EeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122           76 NLKLVDVGTGAGLP-GLVLAIACPDWKVTL-LESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        76 ~~~VLDiGcG~G~~-~~~la~~~~~~~v~~-vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      ..+|.=||||.... ...-+...++.++++ +|.+++.   +++.+++.+..   -...|++++...    ...|+|+..
T Consensus        26 ~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~---a~~~a~~~~~~---~~~~~~~~ll~~----~~vD~V~I~   95 (361)
T 3u3x_A           26 ELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDAL---AAEFSAVYADA---RRIATAEEILED----ENIGLIVSA   95 (361)
T ss_dssp             CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHH---HHHHHHHSSSC---CEESCHHHHHTC----TTCCEEEEC
T ss_pred             CcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHH---HHHHHHHcCCC---cccCCHHHHhcC----CCCCEEEEe
Confidence            35899999997653 222222347788665 5898864   45555566532   234577776432    469999975


Q ss_pred             CcccHHHHHHHHccCcccCeEEEEEeC-CCcHHHHHHHHHHHHHhCCee
Q 026122          154 AVAEMRILAEYCLPLVRVGGLFVAAKG-HDPQEEVKNSERAVQLMGASL  201 (243)
Q Consensus       154 ~~~~~~~~l~~~~~~LkpgG~l~~~~~-~~~~~~~~~~~~~l~~~g~~~  201 (243)
                      .....  =.+.+...|+.|=.+++.++ ....++..++.+..++.|..+
T Consensus        96 tp~~~--H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~l  142 (361)
T 3u3x_A           96 AVSSE--RAELAIRAMQHGKDVLVDKPGMTSFDQLAKLRRVQAETGRIF  142 (361)
T ss_dssp             CCHHH--HHHHHHHHHHTTCEEEEESCSCSSHHHHHHHHHHHHTTCCCE
T ss_pred             CChHH--HHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEE
Confidence            43221  12233345555555555554 345666677777767766544

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=85.84  E-value=2.2  Score=35.03  Aligned_cols=77  Identities=8%  Similarity=-0.082  Sum_probs=46.6

Q ss_pred             CCeEEEEcCCC-ChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC-------cCCC
Q 026122           76 NLKLVDVGTGA-GLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------SFRE  145 (243)
Q Consensus        76 ~~~VLDiGcG~-G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-------~~~~  145 (243)
                      +++||=.|+++ |.+|..+++.+  .+++|++++.+++.-+.+++..+..+  ++.++.+|+.+.....       ...+
T Consensus        21 ~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~--~~~~~~~Dl~~~~~v~~~~~~~~~~~g   98 (285)
T 2p91_A           21 GKRALITGVANERSIAYGIAKSFHREGAQLAFTYATPKLEKRVREIAKGFG--SDLVVKCDVSLDEDIKNLKKFLEENWG   98 (285)
T ss_dssp             TCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTT--CCCEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            67889889862 55666666543  46899999998752223333323233  3677888887632110       0014


Q ss_pred             CceEEEEcC
Q 026122          146 QYDVAVARA  154 (243)
Q Consensus       146 ~fD~I~~~~  154 (243)
                      ..|+++.++
T Consensus        99 ~iD~lv~~A  107 (285)
T 2p91_A           99 SLDIIVHSI  107 (285)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            689999875

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=85.47  E-value=4.5  Score=35.96  Aligned_cols=105  Identities=14%  Similarity=0.066  Sum_probs=58.3

Q ss_pred             CeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHH------------H-cCCCCEEEEEccccccccCC
Q 026122           77 LKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVS------------L-TQLLNVQIVRGRAETLGKDV  141 (243)
Q Consensus        77 ~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~------------~-~~~~~v~~~~~d~~~~~~~~  141 (243)
                      .+|.=||+  |.+|..+|...  .+.+|+++|++++.++..++...            + ....++++ ..|..+..   
T Consensus         3 mkI~VIG~--G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~-t~d~~ea~---   76 (450)
T 3gg2_A            3 LDIAVVGI--GYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRF-GTEIEQAV---   76 (450)
T ss_dssp             CEEEEECC--SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEE-ESCHHHHG---
T ss_pred             CEEEEECc--CHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEE-ECCHHHHH---
Confidence            35666766  55655555432  36799999999987776554100            0 00112332 23333321   


Q ss_pred             cCCCCceEEEEcC-cc----------cHHHHHHHHccCcccCeEEEEEeC--CCcHHHHHHH
Q 026122          142 SFREQYDVAVARA-VA----------EMRILAEYCLPLVRVGGLFVAAKG--HDPQEEVKNS  190 (243)
Q Consensus       142 ~~~~~fD~I~~~~-~~----------~~~~~l~~~~~~LkpgG~l~~~~~--~~~~~~~~~~  190 (243)
                         ...|+|+... ..          ....+++.+.+.+++|-.++..+.  +...+++.+.
T Consensus        77 ---~~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgt~~~l~~~  135 (450)
T 3gg2_A           77 ---PEADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKSTVPVGSYRLIRKA  135 (450)
T ss_dssp             ---GGCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHH
T ss_pred             ---hcCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEeeeCCCcchHHHHHH
Confidence               3478888643 11          467788888888888766544432  2334444433

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=85.41  E-value=5.4  Score=32.83  Aligned_cols=91  Identities=12%  Similarity=0.073  Sum_probs=55.6

Q ss_pred             CeEEEEcCCCChHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHc---------CCC---------CEEEEEccccc
Q 026122           77 LKLVDVGTGAGLPGLVLAIA--CPDWKVTLLESMNKRCVFLEHAVSLT---------QLL---------NVQIVRGRAET  136 (243)
Q Consensus        77 ~~VLDiGcG~G~~~~~la~~--~~~~~v~~vD~s~~~~~~a~~~~~~~---------~~~---------~v~~~~~d~~~  136 (243)
                      .+|.=||+|  .++..+|..  ..+.+|+.+|.+++.++.+++.+++.         ++.         +++. ..|..+
T Consensus         5 ~kV~VIGaG--~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~-~~~~~~   81 (283)
T 4e12_A            5 TNVTVLGTG--VLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRY-SDDLAQ   81 (283)
T ss_dssp             CEEEEECCS--HHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEE-ESCHHH
T ss_pred             CEEEEECCC--HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEE-eCCHHH
Confidence            467777775  444444432  24679999999999888776653221         111         1222 233333


Q ss_pred             cccCCcCCCCceEEEEcCcc---cHHHHHHHHccCcccCeEEE
Q 026122          137 LGKDVSFREQYDVAVARAVA---EMRILAEYCLPLVRVGGLFV  176 (243)
Q Consensus       137 ~~~~~~~~~~fD~I~~~~~~---~~~~~l~~~~~~LkpgG~l~  176 (243)
                      ..      ...|+|+.....   ....+++.+.+.++|+..++
T Consensus        82 ~~------~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~  118 (283)
T 4e12_A           82 AV------KDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFA  118 (283)
T ss_dssp             HT------TTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEE
T ss_pred             Hh------ccCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEE
Confidence            21      458999986544   34667788888888887654

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=85.36  E-value=2.4  Score=34.15  Aligned_cols=77  Identities=14%  Similarity=0.168  Sum_probs=49.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCc-------CCCC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-------FREQ  146 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~-------~~~~  146 (243)
                      ++++|=.|++.| ++..+++.+  .+++|++++.+++..+.+.+.++..+. ++.++.+|+.+......       ..+.
T Consensus         2 ~k~vlVTGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~v~~~~~~~~~~~g~   79 (256)
T 1geg_A            2 KKVALVTGAGQG-IGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGG-HAVAVKVDVSDRDQVFAAVEQARKTLGG   79 (256)
T ss_dssp             CCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHHTTC
T ss_pred             CCEEEEECCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            457777786544 555555432  468999999998776655555544442 48888889876421100       0137


Q ss_pred             ceEEEEcC
Q 026122          147 YDVAVARA  154 (243)
Q Consensus       147 fD~I~~~~  154 (243)
                      .|+++.++
T Consensus        80 id~lv~nA   87 (256)
T 1geg_A           80 FDVIVNNA   87 (256)
T ss_dssp             CCEEEECC
T ss_pred             CCEEEECC
Confidence            89999875

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=85.24  E-value=0.81  Score=35.88  Aligned_cols=90  Identities=16%  Similarity=0.054  Sum_probs=55.0

Q ss_pred             eEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccc-cccCCcCCCCceEEEEcC
Q 026122           78 KLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAET-LGKDVSFREQYDVAVARA  154 (243)
Q Consensus        78 ~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~~~~~~~~~~fD~I~~~~  154 (243)
                      +||=.| |+|.+|..+++..  .+.+|++++.++...+         ...+++++.+|+.+ .......-..+|+|+..+
T Consensus         2 ~ilItG-atG~iG~~l~~~L~~~g~~V~~~~R~~~~~~---------~~~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~a   71 (219)
T 3dqp_A            2 KIFIVG-STGRVGKSLLKSLSTTDYQIYAGARKVEQVP---------QYNNVKAVHFDVDWTPEEMAKQLHGMDAIINVS   71 (219)
T ss_dssp             EEEEES-TTSHHHHHHHHHHTTSSCEEEEEESSGGGSC---------CCTTEEEEECCTTSCHHHHHTTTTTCSEEEECC
T ss_pred             eEEEEC-CCCHHHHHHHHHHHHCCCEEEEEECCccchh---------hcCCceEEEecccCCHHHHHHHHcCCCEEEECC
Confidence            466666 5688887777654  3579999999875322         11469999999987 322111125699999865


Q ss_pred             cc-----------cHHHHHHHHccCcccCeEEEEEe
Q 026122          155 VA-----------EMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       155 ~~-----------~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      ..           ....+++.+.+.  ..+++++..
T Consensus        72 g~~~~~~~~~n~~~~~~l~~a~~~~--~~~~iv~~S  105 (219)
T 3dqp_A           72 GSGGKSLLKVDLYGAVKLMQAAEKA--EVKRFILLS  105 (219)
T ss_dssp             CCTTSSCCCCCCHHHHHHHHHHHHT--TCCEEEEEC
T ss_pred             cCCCCCcEeEeHHHHHHHHHHHHHh--CCCEEEEEC
Confidence            21           134555555332  224666655

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=85.08  E-value=3.1  Score=35.27  Aligned_cols=110  Identities=11%  Similarity=0.040  Sum_probs=64.5

Q ss_pred             eEEEEcCCCChHHHHHHH---HCCCCEEEE-EeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122           78 KLVDVGTGAGLPGLVLAI---ACPDWKVTL-LESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        78 ~VLDiGcG~G~~~~~la~---~~~~~~v~~-vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      +|.=||||.  .+...+.   ..++.++++ +|.+++..   ++.++..+..   -...|..++...    ...|+|+..
T Consensus         4 rvgiIG~G~--~g~~~~~~l~~~~~~~l~av~d~~~~~~---~~~~~~~~~~---~~~~~~~~ll~~----~~~D~V~i~   71 (344)
T 3ezy_A            4 RIGVIGLGR--IGTIHAENLKMIDDAILYAISDVREDRL---REMKEKLGVE---KAYKDPHELIED----PNVDAVLVC   71 (344)
T ss_dssp             EEEEECCSH--HHHHHHHHGGGSTTEEEEEEECSCHHHH---HHHHHHHTCS---EEESSHHHHHHC----TTCCEEEEC
T ss_pred             EEEEEcCCH--HHHHHHHHHHhCCCcEEEEEECCCHHHH---HHHHHHhCCC---ceeCCHHHHhcC----CCCCEEEEc
Confidence            677889874  3323332   346778886 59998643   4444455542   234566665432    468999975


Q ss_pred             Cccc-HHHHHHHHccCcccCeEEEEEeC-CCcHHHHHHHHHHHHHhCCeee
Q 026122          154 AVAE-MRILAEYCLPLVRVGGLFVAAKG-HDPQEEVKNSERAVQLMGASLL  202 (243)
Q Consensus       154 ~~~~-~~~~l~~~~~~LkpgG~l~~~~~-~~~~~~~~~~~~~l~~~g~~~~  202 (243)
                      .... ..+   .+...|+.|-.+++.++ ....++..++.+..++.|..+.
T Consensus        72 tp~~~h~~---~~~~al~~gk~v~~EKP~~~~~~e~~~l~~~a~~~g~~~~  119 (344)
T 3ezy_A           72 SSTNTHSE---LVIACAKAKKHVFCEKPLSLNLADVDRMIEETKKADVILF  119 (344)
T ss_dssp             SCGGGHHH---HHHHHHHTTCEEEEESCSCSCHHHHHHHHHHHHHHTCCEE
T ss_pred             CCCcchHH---HHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhCCcEE
Confidence            4332 222   22344566666666664 4556777777777778776443

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=85.04  E-value=4.1  Score=32.41  Aligned_cols=77  Identities=13%  Similarity=0.039  Sum_probs=52.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC-------cCCCC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------SFREQ  146 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-------~~~~~  146 (243)
                      ++++|=.|++.| ++..+++.+  .+++|++++.++...+...+..+..+. ++.++.+|+.+.....       ...++
T Consensus         5 ~k~vlITGas~g-IG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~   82 (247)
T 3lyl_A            5 EKVALVTGASRG-IGFEVAHALASKGATVVGTATSQASAEKFENSMKEKGF-KARGLVLNISDIESIQNFFAEIKAENLA   82 (247)
T ss_dssp             TCEEEESSCSSH-HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHTTCC
T ss_pred             CCEEEEECCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            677888886554 555555432  468999999999888777776666554 5889999987642110       01146


Q ss_pred             ceEEEEcC
Q 026122          147 YDVAVARA  154 (243)
Q Consensus       147 fD~I~~~~  154 (243)
                      .|+++.++
T Consensus        83 id~li~~A   90 (247)
T 3lyl_A           83 IDILVNNA   90 (247)
T ss_dssp             CSEEEECC
T ss_pred             CCEEEECC
Confidence            89999864

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=84.86  E-value=2.7  Score=34.27  Aligned_cols=77  Identities=14%  Similarity=0.010  Sum_probs=50.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC--------cCCC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV--------SFRE  145 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~--------~~~~  145 (243)
                      ++++|=.|++.| ++..+++.+  .+++|++++.+++.++.+.+.++..+. ++.++.+|+.+.....        ...+
T Consensus        21 ~k~vlVTGas~g-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~g   98 (273)
T 1ae1_A           21 GTTALVTGGSKG-IGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGL-NVEGSVCDLLSRTERDKLMQTVAHVFDG   98 (273)
T ss_dssp             TCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHTTS
T ss_pred             CCEEEEECCcch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            678888887554 555555432  468999999998876655555554443 4888889987642110        0014


Q ss_pred             CceEEEEcC
Q 026122          146 QYDVAVARA  154 (243)
Q Consensus       146 ~fD~I~~~~  154 (243)
                      ..|+++.++
T Consensus        99 ~id~lv~nA  107 (273)
T 1ae1_A           99 KLNILVNNA  107 (273)
T ss_dssp             CCCEEEECC
T ss_pred             CCcEEEECC
Confidence            689999875

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=84.79  E-value=8.3  Score=34.12  Aligned_cols=91  Identities=18%  Similarity=0.166  Sum_probs=50.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHH------------HHc-CCCCEEEEEccccccccC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAV------------SLT-QLLNVQIVRGRAETLGKD  140 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~------------~~~-~~~~v~~~~~d~~~~~~~  140 (243)
                      +.+.-=||+|  .+|+.+|...  .+.+|+++|++++.++..++..            ++. .-.++.+- .|+      
T Consensus        11 ~~~~~ViGlG--yvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~t-td~------   81 (431)
T 3ojo_A           11 GSKLTVVGLG--YIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVS-TTP------   81 (431)
T ss_dssp             -CEEEEECCS--TTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEE-SSC------
T ss_pred             CCccEEEeeC--HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEe-Cch------
Confidence            4555556665  4444444332  3679999999999887665420            000 00112221 121      


Q ss_pred             CcCCCCceEEEEcC---c----------ccHHHHHHHHccCcccCeEEEEEe
Q 026122          141 VSFREQYDVAVARA---V----------AEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       141 ~~~~~~fD~I~~~~---~----------~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                          ...|+|+..-   .          .......+.+.+.|++|-.++..+
T Consensus        82 ----~~aDvvii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~S  129 (431)
T 3ojo_A           82 ----EASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVES  129 (431)
T ss_dssp             ----CCCSEEEECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECS
T ss_pred             ----hhCCEEEEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEec
Confidence                2468887631   1          125666778888999887655444

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=84.75  E-value=5  Score=33.54  Aligned_cols=92  Identities=16%  Similarity=0.178  Sum_probs=48.5

Q ss_pred             eEEEEcCCCChHHHHHHH--HCCCC--EEEEEeCCHHHHHHHHHHHHH-cCC-CCEEEEEccccccccCCcCCCCceEEE
Q 026122           78 KLVDVGTGAGLPGLVLAI--ACPDW--KVTLLESMNKRCVFLEHAVSL-TQL-LNVQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        78 ~VLDiGcG~G~~~~~la~--~~~~~--~v~~vD~s~~~~~~a~~~~~~-~~~-~~v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      +|.=||+|  ..+..++.  ...+.  +|+.+|++++.++-....... ... .++++...+.+.+       ...|+|+
T Consensus         2 kI~VIGaG--~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~a~-------~~aDvVI   72 (304)
T 2v6b_A            2 KVGVVGTG--FVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHGGHSEL-------ADAQVVI   72 (304)
T ss_dssp             EEEEECCS--HHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEEECGGGG-------TTCSEEE
T ss_pred             EEEEECCC--HHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEECCHHHh-------CCCCEEE
Confidence            56667875  44433332  22344  899999998765421111111 111 2334433343332       4589999


Q ss_pred             EcCc-c----------------cHHHHHHHHccCcccCeEEEEEe
Q 026122          152 ARAV-A----------------EMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       152 ~~~~-~----------------~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      .... .                -...+.+.+.+. .|++++++..
T Consensus        73 i~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~~~vi~~t  116 (304)
T 2v6b_A           73 LTAGANQKPGESRLDLLEKNADIFRELVPQITRA-APDAVLLVTS  116 (304)
T ss_dssp             ECC------------CHHHHHHHHHHHHHHHHHH-CSSSEEEECS
T ss_pred             EcCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHh-CCCeEEEEec
Confidence            7541 1                125556666665 6899877644

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=84.63  E-value=0.17  Score=48.66  Aligned_cols=94  Identities=18%  Similarity=0.191  Sum_probs=56.7

Q ss_pred             CCCCCeEEEEcC--CCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcccccccc---CCcCCCCc
Q 026122           73 CNSNLKLVDVGT--GAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK---DVSFREQY  147 (243)
Q Consensus        73 ~~~~~~VLDiGc--G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~---~~~~~~~f  147 (243)
                      ++++.+||=.|+  |.|..++.+|+.. +++|++++.+++ .+.++     ++...  ++..+-.++..   .......+
T Consensus       343 l~~G~~VLI~gaaGgvG~~aiqlAk~~-Ga~V~~t~~~~k-~~~l~-----lga~~--v~~~~~~~~~~~i~~~t~g~Gv  413 (795)
T 3slk_A          343 LRPGESLLVHSAAGGVGMAAIQLARHL-GAEVYATASEDK-WQAVE-----LSREH--LASSRTCDFEQQFLGATGGRGV  413 (795)
T ss_dssp             CCTTCCEEEESTTBHHHHHHHHHHHHT-TCCEEEECCGGG-GGGSC-----SCGGG--EECSSSSTHHHHHHHHSCSSCC
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHc-CCEEEEEeChHH-hhhhh-----cChhh--eeecCChhHHHHHHHHcCCCCe
Confidence            456899999995  4677888888876 569999986652 22111     33322  22211111110   00011469


Q ss_pred             eEEEEcCcccHHHHHHHHccCcccCeEEEEE
Q 026122          148 DVAVARAVAEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       148 D~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                      |+|+-....   ..++...+.|+++|+++.+
T Consensus       414 DvVld~~gg---~~~~~~l~~l~~~Gr~v~i  441 (795)
T 3slk_A          414 DVVLNSLAG---EFADASLRMLPRGGRFLEL  441 (795)
T ss_dssp             SEEEECCCT---TTTHHHHTSCTTCEEEEEC
T ss_pred             EEEEECCCc---HHHHHHHHHhcCCCEEEEe
Confidence            999974322   3457788999999998765

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=84.49  E-value=5.5  Score=31.73  Aligned_cols=77  Identities=16%  Similarity=0.059  Sum_probs=50.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCc-C------CCC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-F------REQ  146 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~-~------~~~  146 (243)
                      +++||=.|++ |.++..+++.+  .+++|+++|.++...+...+.++..+. ++.++.+|+.+...... .      .++
T Consensus        13 ~k~vlItGas-ggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~   90 (260)
T 3awd_A           13 NRVAIVTGGA-QNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEGH-DVSSVVMDVTNTESVQNAVRSVHEQEGR   90 (260)
T ss_dssp             TCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            6788888865 55666666543  468999999998766655555544443 58899999876431100 0      036


Q ss_pred             ceEEEEcC
Q 026122          147 YDVAVARA  154 (243)
Q Consensus       147 fD~I~~~~  154 (243)
                      .|+++.++
T Consensus        91 id~vi~~A   98 (260)
T 3awd_A           91 VDILVACA   98 (260)
T ss_dssp             CCEEEECC
T ss_pred             CCEEEECC
Confidence            89999864

>4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus}

Probab=84.42  E-value=8.2  Score=34.42  Aligned_cols=77  Identities=17%  Similarity=0.172  Sum_probs=49.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHH---HHHHHHHHHHc--------CCCCEEEEEccccccccCCc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKR---CVFLEHAVSLT--------QLLNVQIVRGRAETLGKDVS  142 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~---~~~a~~~~~~~--------~~~~v~~~~~d~~~~~~~~~  142 (243)
                      ..+||=.| |+|.+|..+++..  .+.+|++++.++..   .+...+..+..        ...+++++.+|+.+..... 
T Consensus       150 ~~~VLVTG-atG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~-  227 (508)
T 4f6l_B          150 LGNTLLTG-ATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDVV-  227 (508)
T ss_dssp             CEEEEESC-TTSHHHHHHHHHTBTTEEEEEEEEESSSHHHHHHHHHHHHHHHSCHHHHHHHSTTEEEEEEBTTBCSSCC-
T ss_pred             CCeEEEEC-CccchHHHHHHHHHhcCCEEEEEECCCChHHHHHHHHHHHHHhcccccchhccCceEEEecCCcccccCC-
Confidence            45677666 6899998888765  35789999988762   22222222221        1246999999998843321 


Q ss_pred             CCCCceEEEEcC
Q 026122          143 FREQYDVAVARA  154 (243)
Q Consensus       143 ~~~~fD~I~~~~  154 (243)
                      ....+|+|+..+
T Consensus       228 ~~~~~D~Vih~A  239 (508)
T 4f6l_B          228 LPENMDTIIHAG  239 (508)
T ss_dssp             CSSCCSEEEECC
T ss_pred             CccCCCEEEECC
Confidence            235799999754

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=84.42  E-value=1.3  Score=31.91  Aligned_cols=94  Identities=12%  Similarity=0.072  Sum_probs=51.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcC-CCCceEEEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSF-REQYDVAVA  152 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~-~~~fD~I~~  152 (243)
                      ..+|+=+|+  |.++..+++..  .+.+|+.+|.+++.++.++    ..   ...++.+|..+....... ...+|+|+.
T Consensus         6 ~~~v~I~G~--G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~----~~---~~~~~~~d~~~~~~l~~~~~~~~d~vi~   76 (144)
T 2hmt_A            6 NKQFAVIGL--GRFGGSIVKELHRMGHEVLAVDINEEKVNAYA----SY---ATHAVIANATEENELLSLGIRNFEYVIV   76 (144)
T ss_dssp             CCSEEEECC--SHHHHHHHHHHHHTTCCCEEEESCHHHHHTTT----TT---CSEEEECCTTCHHHHHTTTGGGCSEEEE
T ss_pred             CCcEEEECC--CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH----Hh---CCEEEEeCCCCHHHHHhcCCCCCCEEEE
Confidence            567998987  66666666542  3578999999986443221    11   235666776542110000 146899998


Q ss_pred             cCccc--HHHHHHHHccCcccCeEEEEEe
Q 026122          153 RAVAE--MRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       153 ~~~~~--~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      ....+  ....+....+.+.+. .++...
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~-~ii~~~  104 (144)
T 2hmt_A           77 AIGANIQASTLTTLLLKELDIP-NIWVKA  104 (144)
T ss_dssp             CCCSCHHHHHHHHHHHHHTTCS-EEEEEC
T ss_pred             CCCCchHHHHHHHHHHHHcCCC-eEEEEe
Confidence            65432  222333333445565 555433

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=84.40  E-value=9.5  Score=33.01  Aligned_cols=89  Identities=20%  Similarity=0.195  Sum_probs=59.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  155 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~  155 (243)
                      +.+||+++-+-|.+++.++   +..+++.+.-|.-    +....+.+|+.. .. ....+.      .+..||+|+..-.
T Consensus        46 ~~~~l~~n~~~g~~~~~~~---~~~~~~~~~~~~~----~~~~l~~~~~~~-~~-~~~~~~------~~~~~d~v~~~~P  110 (381)
T 3dmg_A           46 GERALDLNPGVGWGSLPLE---GRMAVERLETSRA----AFRCLTASGLQA-RL-ALPWEA------AAGAYDLVVLALP  110 (381)
T ss_dssp             SSEEEESSCTTSTTTGGGB---TTBEEEEEECBHH----HHHHHHHTTCCC-EE-CCGGGS------CTTCEEEEEEECC
T ss_pred             CCcEEEecCCCCccccccC---CCCceEEEeCcHH----HHHHHHHcCCCc-cc-cCCccC------CcCCCCEEEEECC
Confidence            5699999999997754443   4568888866653    334477778752 22 111111      1267999997543


Q ss_pred             -----ccHHHHHHHHccCcccCeEEEEEe
Q 026122          156 -----AEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       156 -----~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                           ...+..+..+.+.|+|||.+++.-
T Consensus       111 k~k~~~~~~~~l~~~~~~l~~g~~i~~~g  139 (381)
T 3dmg_A          111 AGRGTAYVQASLVAAARALRMGGRLYLAG  139 (381)
T ss_dssp             GGGCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cchhHHHHHHHHHHHHHhCCCCCEEEEEE
Confidence                 235778888899999999987754

>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A

Probab=84.32  E-value=7.3  Score=34.86  Aligned_cols=116  Identities=9%  Similarity=0.022  Sum_probs=68.0

Q ss_pred             CCeEEEEcCCC--ChHHHHHH---HHC-CCCEEE-EEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCce
Q 026122           76 NLKLVDVGTGA--GLPGLVLA---IAC-PDWKVT-LLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYD  148 (243)
Q Consensus        76 ~~~VLDiGcG~--G~~~~~la---~~~-~~~~v~-~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD  148 (243)
                      ..+|.=||||.  |..+...+   ... ++.+++ .+|.+++.   +++.+++.+...+.+ ..|++++...    ...|
T Consensus        39 ~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~---a~~~a~~~g~~~~~~-~~d~~ell~~----~~vD  110 (479)
T 2nvw_A           39 PIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKS---SLQTIEQLQLKHATG-FDSLESFAQY----KDID  110 (479)
T ss_dssp             CEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHH---HHHHHHHTTCTTCEE-ESCHHHHHHC----TTCS
T ss_pred             cCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHH---HHHHHHHcCCCccee-eCCHHHHhcC----CCCC
Confidence            35799999964  55543222   234 677776 56998864   445556666643333 4566665432    4689


Q ss_pred             EEEEcCcccHHHHHHHHccCcccC------eEEEEEeC-CCcHHHHHHHHHHHHHhC-Cee
Q 026122          149 VAVARAVAEMRILAEYCLPLVRVG------GLFVAAKG-HDPQEEVKNSERAVQLMG-ASL  201 (243)
Q Consensus       149 ~I~~~~~~~~~~~l~~~~~~Lkpg------G~l~~~~~-~~~~~~~~~~~~~l~~~g-~~~  201 (243)
                      +|+.......  -.+.+...|+.|      =.+++.++ ....++..++.+..++.| ..+
T Consensus       111 ~V~I~tp~~~--H~~~~~~al~aG~~~~~~khVl~EKPla~~~~ea~~l~~~a~~~g~~~~  169 (479)
T 2nvw_A          111 MIVVSVKVPE--HYEVVKNILEHSSQNLNLRYLYVEWALAASVQQAEELYSISQQRANLQT  169 (479)
T ss_dssp             EEEECSCHHH--HHHHHHHHHHHSSSCSSCCEEEEESSSSSSHHHHHHHHHHHHTCTTCEE
T ss_pred             EEEEcCCcHH--HHHHHHHHHHCCCCcCCceeEEEeCCCcCCHHHHHHHHHHHHHcCCeEE
Confidence            9998643321  123333455555      45666663 345667777777777888 543

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}

Probab=84.22  E-value=4.6  Score=34.84  Aligned_cols=112  Identities=16%  Similarity=0.106  Sum_probs=62.8

Q ss_pred             CeEEEEcCC-CChH-HHHHHHHCCCCEEEE-EeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122           77 LKLVDVGTG-AGLP-GLVLAIACPDWKVTL-LESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        77 ~~VLDiGcG-~G~~-~~~la~~~~~~~v~~-vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      .+|.=|||| .... -+......++.++++ +|.+++..   ++.+++.+..    ...|++++...    ...|+|+..
T Consensus         3 ~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~---~~~a~~~g~~----~~~~~~ell~~----~~vD~V~i~   71 (387)
T 3moi_A            3 IRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVR---ERFGKEYGIP----VFATLAEMMQH----VQMDAVYIA   71 (387)
T ss_dssp             EEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHH---HHHHHHHTCC----EESSHHHHHHH----SCCSEEEEC
T ss_pred             eEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHH---HHHHHHcCCC----eECCHHHHHcC----CCCCEEEEc
Confidence            478889999 4322 122233457777775 69998644   3344455543    34577766432    468999975


Q ss_pred             CcccHHHHHHHHccCcccCeEEEEEeC-CCcHHHHHHHHHHHHHhCCee
Q 026122          154 AVAEMRILAEYCLPLVRVGGLFVAAKG-HDPQEEVKNSERAVQLMGASL  201 (243)
Q Consensus       154 ~~~~~~~~l~~~~~~LkpgG~l~~~~~-~~~~~~~~~~~~~l~~~g~~~  201 (243)
                      ......  .+.+...|+.|=.+++.++ ....++..++.+..++.|..+
T Consensus        72 tp~~~H--~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~  118 (387)
T 3moi_A           72 SPHQFH--CEHVVQASEQGLHIIVEKPLTLSRDEADRMIEAVERAGVHL  118 (387)
T ss_dssp             SCGGGH--HHHHHHHHHTTCEEEECSCCCSCHHHHHHHHHHHHHHTCCE
T ss_pred             CCcHHH--HHHHHHHHHCCCceeeeCCccCCHHHHHHHHHHHHHhCCeE
Confidence            433211  1223344555555555554 344666677777777777543

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=84.15  E-value=2.7  Score=33.83  Aligned_cols=77  Identities=8%  Similarity=-0.090  Sum_probs=49.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCc--------CCC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS--------FRE  145 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~--------~~~  145 (243)
                      +++||=.|+ +|.++..+++.+  .+++|++++.++..++...+.++..+. ++.++.+|+.+......        ..+
T Consensus        14 ~k~vlITGa-sggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~   91 (266)
T 1xq1_A           14 AKTVLVTGG-TKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGF-QVTGSVCDASLRPEREKLMQTVSSMFGG   91 (266)
T ss_dssp             TCEEEETTT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHHHTT
T ss_pred             CCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eeEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence            567887776 455666666542  468999999998776655555544443 48888888876421100        004


Q ss_pred             CceEEEEcC
Q 026122          146 QYDVAVARA  154 (243)
Q Consensus       146 ~fD~I~~~~  154 (243)
                      +.|+++.++
T Consensus        92 ~id~li~~A  100 (266)
T 1xq1_A           92 KLDILINNL  100 (266)
T ss_dssp             CCSEEEEEC
T ss_pred             CCcEEEECC
Confidence            689999864

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=84.13  E-value=1.9  Score=36.22  Aligned_cols=78  Identities=15%  Similarity=0.066  Sum_probs=47.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcC----CCCEEEEEccccccccCCcCCCCceE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQ----LLNVQIVRGRAETLGKDVSFREQYDV  149 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~~~~~~~~~~fD~  149 (243)
                      +.+||=.| |+|.+|..++...  .+.+|++++.++..............    ..+++++.+|+.+.......-..+|+
T Consensus        25 ~~~vlVtG-atG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~  103 (351)
T 3ruf_A           25 PKTWLITG-VAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGVDH  103 (351)
T ss_dssp             CCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTTCSE
T ss_pred             CCeEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcCCCE
Confidence            67888777 5788887776543  46899999985432111111122111    04689999999774321111147899


Q ss_pred             EEEcC
Q 026122          150 AVARA  154 (243)
Q Consensus       150 I~~~~  154 (243)
                      |+..+
T Consensus       104 Vih~A  108 (351)
T 3ruf_A          104 VLHQA  108 (351)
T ss_dssp             EEECC
T ss_pred             EEECC
Confidence            99764

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=84.11  E-value=9.2  Score=32.00  Aligned_cols=91  Identities=15%  Similarity=0.160  Sum_probs=54.3

Q ss_pred             CCeEEEEcCCCChHHHHHHH--HCCCCEEEEEeCCHHHHHHHHHHHHHcCCC----CEEEE-----EccccccccCCcCC
Q 026122           76 NLKLVDVGTGAGLPGLVLAI--ACPDWKVTLLESMNKRCVFLEHAVSLTQLL----NVQIV-----RGRAETLGKDVSFR  144 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~--~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~----~v~~~-----~~d~~~~~~~~~~~  144 (243)
                      ..+|.=||+|.  +|..+|.  ...+.+|+.+ .+++.++..++.    ++.    ...+.     ..+...       .
T Consensus        19 ~~kI~IiGaGa--~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~~----g~~~~~~~~~~~~~~~~~~~~~~-------~   84 (318)
T 3hwr_A           19 GMKVAIMGAGA--VGCYYGGMLARAGHEVILI-ARPQHVQAIEAT----GLRLETQSFDEQVKVSASSDPSA-------V   84 (318)
T ss_dssp             -CEEEEESCSH--HHHHHHHHHHHTTCEEEEE-CCHHHHHHHHHH----CEEEECSSCEEEECCEEESCGGG-------G
T ss_pred             CCcEEEECcCH--HHHHHHHHHHHCCCeEEEE-EcHhHHHHHHhC----CeEEEcCCCcEEEeeeeeCCHHH-------c
Confidence            56899998874  3333332  2235789999 888766555432    221    11111     111111       1


Q ss_pred             CCceEEEEcC-cccHHHHHHHHccCcccCeEEEEEeC
Q 026122          145 EQYDVAVARA-VAEMRILAEYCLPLVRVGGLFVAAKG  180 (243)
Q Consensus       145 ~~fD~I~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~  180 (243)
                      ..+|+|+... ......+++.+.+.++++..++....
T Consensus        85 ~~~D~vilavk~~~~~~~l~~l~~~l~~~~~iv~~~n  121 (318)
T 3hwr_A           85 QGADLVLFCVKSTDTQSAALAMKPALAKSALVLSLQN  121 (318)
T ss_dssp             TTCSEEEECCCGGGHHHHHHHHTTTSCTTCEEEEECS
T ss_pred             CCCCEEEEEcccccHHHHHHHHHHhcCCCCEEEEeCC
Confidence            4689988754 34678899999999999887665543

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=84.11  E-value=3.1  Score=34.95  Aligned_cols=95  Identities=16%  Similarity=0.032  Sum_probs=53.7

Q ss_pred             CCeEEEEcCCCCh--HHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122           76 NLKLVDVGTGAGL--PGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        76 ~~~VLDiGcG~G~--~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      ..+|.=||+|+..  .+..++......+|+.+|++++....+..... ....+++.. .|.+++       ...|+|+..
T Consensus        14 ~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~-~~~~~i~~t-~d~~~l-------~~aD~Vi~a   84 (303)
T 2i6t_A           14 VNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEI-FNLPNVEIS-KDLSAS-------AHSKVVIFT   84 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHH-HTCTTEEEE-SCGGGG-------TTCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhh-hcCCCeEEe-CCHHHH-------CCCCEEEEc
Confidence            4689999998533  33444444323489999999864444444443 222345553 555443       458999986


Q ss_pred             C-------------ccc---HHHHHHHHccCcccCeEEEEEeC
Q 026122          154 A-------------VAE---MRILAEYCLPLVRVGGLFVAAKG  180 (243)
Q Consensus       154 ~-------------~~~---~~~~l~~~~~~LkpgG~l~~~~~  180 (243)
                      +             ..+   ..++++.+.+.. |++++++..+
T Consensus        85 ag~~~pG~tR~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~sN  126 (303)
T 2i6t_A           85 VNSLGSSQSYLDVVQSNVDMFRALVPALGHYS-QHSVLLVASQ  126 (303)
T ss_dssp             CCC----CCHHHHHHHHHHHHHHHHHHHHHHT-TTCEEEECSS
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEcCC
Confidence            4             111   455666666654 9999777544

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=84.05  E-value=1.7  Score=35.47  Aligned_cols=103  Identities=15%  Similarity=0.067  Sum_probs=62.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEe-CCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCc-------CCC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLE-SMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-------FRE  145 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD-~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~-------~~~  145 (243)
                      ++++|=.|++.|. +..+++.+  .+++|+.++ .++...+...+..+..+. ++.++.+|+.+...-..       ..+
T Consensus        27 ~k~~lVTGas~GI-G~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~v~~~~~~~~~~~g  104 (267)
T 3u5t_A           27 NKVAIVTGASRGI-GAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAAGG-KALTAQADVSDPAAVRRLFATAEEAFG  104 (267)
T ss_dssp             CCEEEEESCSSHH-HHHHHHHHHHHTCEEEEEESSCSHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCC-eEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            6788888877664 44444332  367888874 455555555555555543 48888999876431100       014


Q ss_pred             CceEEEEcCc------------cc-----------HHHHHHHHccCcccCeEEEEEeC
Q 026122          146 QYDVAVARAV------------AE-----------MRILAEYCLPLVRVGGLFVAAKG  180 (243)
Q Consensus       146 ~fD~I~~~~~------------~~-----------~~~~l~~~~~~LkpgG~l~~~~~  180 (243)
                      +.|+++.++-            .+           .-.+++.+.+.++.+|.++.+.+
T Consensus       105 ~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS  162 (267)
T 3u5t_A          105 GVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMST  162 (267)
T ss_dssp             CEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeC
Confidence            7899998751            01           12345566667777898887653

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=84.00  E-value=5.8  Score=32.15  Aligned_cols=77  Identities=12%  Similarity=-0.057  Sum_probs=51.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC-------cCCCC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------SFREQ  146 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-------~~~~~  146 (243)
                      +++||=.|++ |.+|..+++.+  .+++|+++|.++...+...+.++..+. ++.++.+|+.+.....       ...+.
T Consensus        31 ~k~vlITGas-ggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~~~v~~~~~~~~~~~g~  108 (272)
T 1yb1_A           31 GEIVLITGAG-HGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGA-KVHTFVVDCSNREDIYSSAKKVKAEIGD  108 (272)
T ss_dssp             TCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHTCC
T ss_pred             CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhcCC-eEEEEEeeCCCHHHHHHHHHHHHHHCCC
Confidence            6788888865 55666666543  468999999998877666555555443 5889999987642110       00146


Q ss_pred             ceEEEEcC
Q 026122          147 YDVAVARA  154 (243)
Q Consensus       147 fD~I~~~~  154 (243)
                      .|+++.++
T Consensus       109 iD~li~~A  116 (272)
T 1yb1_A          109 VSILVNNA  116 (272)
T ss_dssp             CSEEEECC
T ss_pred             CcEEEECC
Confidence            89999865

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=83.88  E-value=5  Score=33.89  Aligned_cols=113  Identities=17%  Similarity=0.136  Sum_probs=64.8

Q ss_pred             CeEEEEcCCC-ChH-HHHHHHHCCCCEEEE-EeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122           77 LKLVDVGTGA-GLP-GLVLAIACPDWKVTL-LESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        77 ~~VLDiGcG~-G~~-~~~la~~~~~~~v~~-vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      .+|.=||||. |.. ...+....++.++++ +|.+++.   +++.+++.++. + ....|.+++...    ...|+|+..
T Consensus         3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~---~~~~~~~~g~~-~-~~~~~~~~ll~~----~~~D~V~i~   73 (344)
T 3mz0_A            3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEA---AQKVVEQYQLN-A-TVYPNDDSLLAD----ENVDAVLVT   73 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHH---HHHHHHHTTCC-C-EEESSHHHHHHC----TTCCEEEEC
T ss_pred             EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHH---HHHHHHHhCCC-C-eeeCCHHHHhcC----CCCCEEEEC
Confidence            3677899975 222 112221346788775 6998864   44455556641 2 234566665432    458999875


Q ss_pred             Ccc-cHHHHHHHHccCcccCeEEEEEeC-CCcHHHHHHHHHHHHHhCCee
Q 026122          154 AVA-EMRILAEYCLPLVRVGGLFVAAKG-HDPQEEVKNSERAVQLMGASL  201 (243)
Q Consensus       154 ~~~-~~~~~l~~~~~~LkpgG~l~~~~~-~~~~~~~~~~~~~l~~~g~~~  201 (243)
                      ... ...++   +...|+.|-.+++.++ ....++..++.+..++.|..+
T Consensus        74 tp~~~h~~~---~~~al~~Gk~vl~EKP~a~~~~e~~~l~~~a~~~g~~~  120 (344)
T 3mz0_A           74 SWGPAHESS---VLKAIKAQKYVFCEKPLATTAEGCMRIVEEEIKVGKRL  120 (344)
T ss_dssp             SCGGGHHHH---HHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHHSSCC
T ss_pred             CCchhHHHH---HHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHHCCEE
Confidence            432 22222   2345666656666554 345677777777778888654

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=83.87  E-value=6.4  Score=31.77  Aligned_cols=77  Identities=19%  Similarity=0.101  Sum_probs=53.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC-------cCCCC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIA--CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------SFREQ  146 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~--~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-------~~~~~  146 (243)
                      ++++|=.|++.|. +..+++.  ..+++|+.+|.+++.++.+.+.++..+. ++.++.+|+.+.....       ...++
T Consensus        11 ~k~vlVTGas~gI-G~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   88 (264)
T 3ucx_A           11 DKVVVISGVGPAL-GTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTGR-RALSVGTDITDDAQVAHLVDETMKAYGR   88 (264)
T ss_dssp             TCEEEEESCCTTH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHTSC
T ss_pred             CcEEEEECCCcHH-HHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            7789999988775 3344433  2478999999999887777666665553 5889999987743110       00147


Q ss_pred             ceEEEEcC
Q 026122          147 YDVAVARA  154 (243)
Q Consensus       147 fD~I~~~~  154 (243)
                      .|+++.++
T Consensus        89 id~lv~nA   96 (264)
T 3ucx_A           89 VDVVINNA   96 (264)
T ss_dssp             CSEEEECC
T ss_pred             CcEEEECC
Confidence            89999875

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=83.78  E-value=4.6  Score=34.51  Aligned_cols=111  Identities=18%  Similarity=0.193  Sum_probs=63.4

Q ss_pred             CeEEEEcCCC-ChHHHHHHHHCCCCEEEEE-eCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           77 LKLVDVGTGA-GLPGLVLAIACPDWKVTLL-ESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        77 ~~VLDiGcG~-G~~~~~la~~~~~~~v~~v-D~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      .+|.=||||. |..-+......++.+++++ |.+++..+.    ++..+..    ...|++++...    ...|+|+...
T Consensus         6 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~----a~~~g~~----~~~~~~~ll~~----~~~D~V~i~t   73 (359)
T 3e18_A            6 YQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKREA----AAQKGLK----IYESYEAVLAD----EKVDAVLIAT   73 (359)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHH----HHTTTCC----BCSCHHHHHHC----TTCCEEEECS
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHH----HHhcCCc----eeCCHHHHhcC----CCCCEEEEcC
Confidence            4788899974 2221122223467888875 999876443    2344442    23466665332    4689998754


Q ss_pred             cccHHHHHHHHccCcccCeEEEEEeC-CCcHHHHHHHHHHHHHhCCee
Q 026122          155 VAEMRILAEYCLPLVRVGGLFVAAKG-HDPQEEVKNSERAVQLMGASL  201 (243)
Q Consensus       155 ~~~~~~~l~~~~~~LkpgG~l~~~~~-~~~~~~~~~~~~~l~~~g~~~  201 (243)
                      ....  -.+.+...|+.|-.+++.++ ....++..++.+..++.|..+
T Consensus        74 p~~~--h~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~  119 (359)
T 3e18_A           74 PNDS--HKELAISALEAGKHVVCEKPVTMTSEDLLAIMDVAKRVNKHF  119 (359)
T ss_dssp             CGGG--HHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCE
T ss_pred             CcHH--HHHHHHHHHHCCCCEEeeCCCcCCHHHHHHHHHHHHHhCCeE
Confidence            3221  11223345566656666654 345677777777777877644

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=83.75  E-value=9.3  Score=32.82  Aligned_cols=115  Identities=11%  Similarity=0.114  Sum_probs=68.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIA--CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~--~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      ..+|.=||+|  .++..+|..  ..+.+|+++|.+++.++.+.+    .+.   . ...+..++...   ....|+|+..
T Consensus        22 ~mkIgiIGlG--~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~----~g~---~-~~~s~~e~~~~---a~~~DvVi~~   88 (358)
T 4e21_A           22 SMQIGMIGLG--RMGADMVRRLRKGGHECVVYDLNVNAVQALER----EGI---A-GARSIEEFCAK---LVKPRVVWLM   88 (358)
T ss_dssp             CCEEEEECCS--HHHHHHHHHHHHTTCEEEEECSCHHHHHHHHT----TTC---B-CCSSHHHHHHH---SCSSCEEEEC
T ss_pred             CCEEEEECch--HHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH----CCC---E-EeCCHHHHHhc---CCCCCEEEEe
Confidence            4678888765  555555543  235799999999976554432    232   1 12233333211   0345999875


Q ss_pred             C-cccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEE
Q 026122          154 A-VAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQL  204 (243)
Q Consensus       154 ~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~  204 (243)
                      - ....+.+++.+...+++|.. ++..+........++.+.+...|...+..
T Consensus        89 vp~~~v~~vl~~l~~~l~~g~i-iId~st~~~~~~~~~~~~l~~~g~~~vda  139 (358)
T 4e21_A           89 VPAAVVDSMLQRMTPLLAANDI-VIDGGNSHYQDDIRRADQMRAQGITYVDV  139 (358)
T ss_dssp             SCGGGHHHHHHHHGGGCCTTCE-EEECSSCCHHHHHHHHHHHHTTTCEEEEE
T ss_pred             CCHHHHHHHHHHHHhhCCCCCE-EEeCCCCChHHHHHHHHHHHHCCCEEEeC
Confidence            3 22677888888899988765 44444444444455566677778765543

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=83.54  E-value=1.9  Score=34.32  Aligned_cols=77  Identities=18%  Similarity=0.061  Sum_probs=47.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHH-HHcCCCCEEEEEccccccccCCcC-------CC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAV-SLTQLLNVQIVRGRAETLGKDVSF-------RE  145 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~v~~~~~d~~~~~~~~~~-------~~  145 (243)
                      ++++|=.|++ |.++..+++.+  .+++|++++.++..++...+.. +..+ .++.++.+|+.+.......       .+
T Consensus         2 ~k~vlItGas-ggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~   79 (250)
T 2cfc_A            2 SRVAIVTGAS-SGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAYA-DKVLRVRADVADEGDVNAAIAATMEQFG   79 (250)
T ss_dssp             CCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHSTTTG-GGEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcC-CcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            4578878865 55665666533  4689999999987655443333 2112 2488899998764311000       03


Q ss_pred             CceEEEEcC
Q 026122          146 QYDVAVARA  154 (243)
Q Consensus       146 ~fD~I~~~~  154 (243)
                      ..|+++.++
T Consensus        80 ~id~li~~A   88 (250)
T 2cfc_A           80 AIDVLVNNA   88 (250)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            689999865

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=83.53  E-value=2.3  Score=34.91  Aligned_cols=77  Identities=13%  Similarity=0.019  Sum_probs=53.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccC-------CcCCCC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIA--CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD-------VSFREQ  146 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~--~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-------~~~~~~  146 (243)
                      ++++|=-|++.|. +..+|+.  ..+++|+.+|.+++.++.+.+.+++.+. ++..+.+|+.+...-       ...-++
T Consensus         9 gKvalVTGas~GI-G~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~~G~   86 (255)
T 4g81_D            9 GKTALVTGSARGL-GFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGY-DAHGVAFDVTDELAIEAAFSKLDAEGIH   86 (255)
T ss_dssp             TCEEEETTCSSHH-HHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTC-CEEECCCCTTCHHHHHHHHHHHHHTTCC
T ss_pred             CCEEEEeCCCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeeCCCHHHHHHHHHHHHHHCCC
Confidence            7788888887775 3444443  2478999999999988877777776664 578888888663210       001257


Q ss_pred             ceEEEEcC
Q 026122          147 YDVAVARA  154 (243)
Q Consensus       147 fD~I~~~~  154 (243)
                      .|+++.|+
T Consensus        87 iDiLVNNA   94 (255)
T 4g81_D           87 VDILINNA   94 (255)
T ss_dssp             CCEEEECC
T ss_pred             CcEEEECC
Confidence            89999874

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=83.52  E-value=3  Score=33.64  Aligned_cols=77  Identities=10%  Similarity=-0.035  Sum_probs=49.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC--------cCCC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV--------SFRE  145 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~--------~~~~  145 (243)
                      ++++|=.|++. .++..+++.+  .+++|+++|.+++.++.+.+.++..+. ++.++.+|+.+.....        ...+
T Consensus         9 ~k~vlVTGas~-giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~g   86 (260)
T 2ae2_A            9 GCTALVTGGSR-GIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGF-KVEASVCDLSSRSERQELMNTVANHFHG   86 (260)
T ss_dssp             TCEEEEESCSS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-EEEEEECCTTCHHHHHHHHHHHHHHTTT
T ss_pred             CCEEEEECCCc-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            67888888754 4555555432  468999999998876655555544442 4788889987642110        0014


Q ss_pred             CceEEEEcC
Q 026122          146 QYDVAVARA  154 (243)
Q Consensus       146 ~fD~I~~~~  154 (243)
                      ..|+++.++
T Consensus        87 ~id~lv~~A   95 (260)
T 2ae2_A           87 KLNILVNNA   95 (260)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            689999875

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=83.40  E-value=0.62  Score=40.61  Aligned_cols=39  Identities=18%  Similarity=0.142  Sum_probs=27.5

Q ss_pred             CCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHH
Q 026122           76 NLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFL  115 (243)
Q Consensus        76 ~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a  115 (243)
                      +.+|+=+|+| .|..+..+++.. +++|+++|.++...+.+
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~-Ga~V~~~d~~~~~~~~~  211 (384)
T 1l7d_A          172 PARVLVFGVGVAGLQAIATAKRL-GAVVMATDVRAATKEQV  211 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCSTTHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHH
Confidence            7899999987 333444455555 46899999998655544

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=83.27  E-value=4.1  Score=34.41  Aligned_cols=110  Identities=14%  Similarity=0.091  Sum_probs=60.1

Q ss_pred             CeEEEEcCCC-ChHHHHHHHHCCCCEEEE-EeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           77 LKLVDVGTGA-GLPGLVLAIACPDWKVTL-LESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        77 ~~VLDiGcG~-G~~~~~la~~~~~~~v~~-vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      .+|.=||||. |..-+......++.++++ +|.+++.   +++.++..+   +. ...|..++...    ...|+|+...
T Consensus         5 ~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~---~~~~a~~~g---~~-~~~~~~~~l~~----~~~D~V~i~t   73 (344)
T 3euw_A            5 LRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEG---AQRLAEANG---AE-AVASPDEVFAR----DDIDGIVIGS   73 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHH---HHHHHHTTT---CE-EESSHHHHTTC----SCCCEEEECS
T ss_pred             eEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHH---HHHHHHHcC---Cc-eeCCHHHHhcC----CCCCEEEEeC
Confidence            4788899975 322112222357788774 7998864   344444444   22 23566665432    4689998754


Q ss_pred             cc-cHHHHHHHHccCcccCeEEEEEeC-CCcHHHHHHHHHHHHHhCCe
Q 026122          155 VA-EMRILAEYCLPLVRVGGLFVAAKG-HDPQEEVKNSERAVQLMGAS  200 (243)
Q Consensus       155 ~~-~~~~~l~~~~~~LkpgG~l~~~~~-~~~~~~~~~~~~~l~~~g~~  200 (243)
                      .. ...++   +...|+.|-.+++..+ ....++..++.+..++.|..
T Consensus        74 p~~~h~~~---~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~~  118 (344)
T 3euw_A           74 PTSTHVDL---ITRAVERGIPALCEKPIDLDIEMVRACKEKIGDGASK  118 (344)
T ss_dssp             CGGGHHHH---HHHHHHTTCCEEECSCSCSCHHHHHHHHHHHGGGGGG
T ss_pred             CchhhHHH---HHHHHHcCCcEEEECCCCCCHHHHHHHHHHHHhcCCe
Confidence            22 22222   2234555555555554 34456666666666666643

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=83.21  E-value=2.2  Score=34.73  Aligned_cols=101  Identities=13%  Similarity=0.113  Sum_probs=61.3

Q ss_pred             CCeEEEEcC-CCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcC-------CC
Q 026122           76 NLKLVDVGT-GAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSF-------RE  145 (243)
Q Consensus        76 ~~~VLDiGc-G~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~-------~~  145 (243)
                      ++++|=.|+ |+|.++..+++.+  .+++|+.+|.+++..  .++..+..+ .++.++.+|+.+.......       .+
T Consensus         7 ~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~~~~--~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   83 (269)
T 2h7i_A            7 GKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRL--IQRITDRLP-AKAPLLELDVQNEEHLASLAGRVTEAIG   83 (269)
T ss_dssp             TCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSCHHH--HHHHHTTSS-SCCCEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecChHHH--HHHHHHhcC-CCceEEEccCCCHHHHHHHHHHHHHHhC
Confidence            678999998 4666776766543  468999999987531  122222222 2467888888763211000       02


Q ss_pred             ---CceEEEEcCc--c------------c---H-----------HHHHHHHccCcccCeEEEEEe
Q 026122          146 ---QYDVAVARAV--A------------E---M-----------RILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       146 ---~fD~I~~~~~--~------------~---~-----------~~~l~~~~~~LkpgG~l~~~~  179 (243)
                         +.|+++.++-  .            +   +           ..+.+.+.+.++++|.++.+.
T Consensus        84 ~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is  148 (269)
T 2h7i_A           84 AGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMD  148 (269)
T ss_dssp             TTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             CCCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCeEEEEc
Confidence               7899998641  0            1   1           234556677777788888765

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=83.20  E-value=1.4  Score=35.28  Aligned_cols=77  Identities=14%  Similarity=-0.004  Sum_probs=48.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCC-HHHHHHHHHHHHHcCCCCEEEEEccccccccCCcC-------CC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESM-NKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSF-------RE  145 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s-~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~-------~~  145 (243)
                      +++||=.|+ +|.++..+++.+  .+.+|++++.+ +..++.+.+.++..+ .++.++.+|+.+.......       .+
T Consensus         7 ~k~vlVTGa-sggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~g   84 (258)
T 3afn_B            7 GKRVLITGS-SQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRADG-GDAAFFAADLATSEACQQLVDEFVAKFG   84 (258)
T ss_dssp             TCEEEETTC-SSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHHHHTT-CEEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCC-CChHHHHHHHHHHHCCCEEEEECCCchhhHHHHHHHHHhcC-CceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            667887775 456666666543  46899999998 665554444444433 2588899998764311000       02


Q ss_pred             CceEEEEcC
Q 026122          146 QYDVAVARA  154 (243)
Q Consensus       146 ~fD~I~~~~  154 (243)
                      ..|+|+.++
T Consensus        85 ~id~vi~~A   93 (258)
T 3afn_B           85 GIDVLINNA   93 (258)
T ss_dssp             SCSEEEECC
T ss_pred             CCCEEEECC
Confidence            689999865

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=83.13  E-value=2.3  Score=34.10  Aligned_cols=77  Identities=16%  Similarity=0.090  Sum_probs=48.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeC-CHHHHHHHHHHHHHcCCCCEEEEEccccccccCCc-C------CC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLES-MNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-F------RE  145 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~-s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~-~------~~  145 (243)
                      +++||=.|++ |.++..+++.+  .+++|++++. ++...+...+.++..+ .++.++.+|+.+...... .      .+
T Consensus         7 ~k~vlITGas-ggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~g   84 (261)
T 1gee_A            7 GKVVVITGSS-TGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVG-GEAIAVKGDVTVESDVINLVQSAIKEFG   84 (261)
T ss_dssp             TCEEEETTCS-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT-CEEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhcC-CceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            6678877755 55666666542  4689999999 7766555544444443 247888899876421100 0      03


Q ss_pred             CceEEEEcC
Q 026122          146 QYDVAVARA  154 (243)
Q Consensus       146 ~fD~I~~~~  154 (243)
                      ..|+++.++
T Consensus        85 ~id~li~~A   93 (261)
T 1gee_A           85 KLDVMINNA   93 (261)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            689999864

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=83.04  E-value=5.1  Score=34.02  Aligned_cols=105  Identities=10%  Similarity=-0.028  Sum_probs=62.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc-------C-CC----------CEEEEEcccccc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT-------Q-LL----------NVQIVRGRAETL  137 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~-~~----------~v~~~~~d~~~~  137 (243)
                      ..+|.=||+|+=.-+++......+.+|+.+|++++.++.+.+++++.       + +.          +++. ..|+.+.
T Consensus         6 ~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~-~~~l~~a   84 (319)
T 3ado_A            6 AGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISS-CTNLAEA   84 (319)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEE-ECCHHHH
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhccc-ccchHhH
Confidence            45888899975322333332335789999999999888776665431       1 11          1222 2233221


Q ss_pred             ccCCcCCCCceEEEEcCccc---HHHHHHHHccCcccCeEEEEEeCCCcHHHH
Q 026122          138 GKDVSFREQYDVAVARAVAE---MRILAEYCLPLVRVGGLFVAAKGHDPQEEV  187 (243)
Q Consensus       138 ~~~~~~~~~fD~I~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~  187 (243)
                      .      ...|+|+=....+   -.++++++-++++|+-+|.-..+.-...++
T Consensus        85 ~------~~ad~ViEav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSsl~is~i  131 (319)
T 3ado_A           85 V------EGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSCLLPSKL  131 (319)
T ss_dssp             T------TTEEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSSCCHHHH
T ss_pred             h------ccCcEEeeccccHHHHHHHHHHHHHHHhhhcceeehhhhhccchhh
Confidence            1      4578888654433   478888999999998775544444433443

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=82.98  E-value=9.6  Score=30.05  Aligned_cols=93  Identities=13%  Similarity=0.033  Sum_probs=56.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC-cCCCCceEEEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACP--DWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-SFREQYDVAVA  152 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-~~~~~fD~I~~  152 (243)
                      ..+|+=+|+  |..+..+++...  +. |+++|.+++.++.++        .++.++.+|..+..... ..-...|.|++
T Consensus         9 ~~~viI~G~--G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~--------~~~~~i~gd~~~~~~l~~a~i~~ad~vi~   77 (234)
T 2aef_A            9 SRHVVICGW--SESTLECLRELRGSEV-FVLAEDENVRKKVLR--------SGANFVHGDPTRVSDLEKANVRGARAVIV   77 (234)
T ss_dssp             -CEEEEESC--CHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH--------TTCEEEESCTTCHHHHHHTTCTTCSEEEE
T ss_pred             CCEEEEECC--ChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh--------cCCeEEEcCCCCHHHHHhcCcchhcEEEE
Confidence            568888887  678878887653  35 999999987654432        23688999887532110 00156898887


Q ss_pred             cCccc-HHHHHHHHccCcccCeEEEEEe
Q 026122          153 RAVAE-MRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       153 ~~~~~-~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      ....+ ....+....+.+.|+..++...
T Consensus        78 ~~~~d~~n~~~~~~a~~~~~~~~iia~~  105 (234)
T 2aef_A           78 DLESDSETIHCILGIRKIDESVRIIAEA  105 (234)
T ss_dssp             CCSCHHHHHHHHHHHHHHCSSSEEEEEC
T ss_pred             cCCCcHHHHHHHHHHHHHCCCCeEEEEE
Confidence            54332 2333334445566765666543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	243
d1xdza_	239	c.66.1.20 (A:) Glucose-inhibited division protein	4e-49
d1jsxa_	207	c.66.1.20 (A:) Glucose-inhibited division protein	1e-25

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} Length = 239

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

 Score =  159 bits (403), Expect = 4e-49
 Identities = 81/224 (36%), Positives = 116/224 (51%), Gaps = 14/224 (6%)

Query: 20  YLGLFLKKRKQNLQKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKL 79
           Y  + ++  +    K+NLT++ +  EV  +H  DS+     +  +  +            
Sbjct: 29  YYDMLVEWNE----KINLTSITEKKEVYLKHFYDSITAAFYVDFNQVNTIC--------- 75

Query: 80  VDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK 139
            DVG GAG P L + I  P   VT+++S+NKR  FLE      QL N      RAET G+
Sbjct: 76  -DVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQ 134

Query: 140 DVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGA 199
               RE YD+  ARAVA + +L+E CLPLV+  GLFVA K    +EE+   ++A+  +G 
Sbjct: 135 RKDVRESYDIVTARAVARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGG 194

Query: 200 SLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDPGTPAKVPL 243
            L  + S +       R  +V  K + TPKKYPR PGTP K P+
Sbjct: 195 ELENIHSFKLPIEESDRNIMVIRKIKNTPKKYPRKPGTPNKSPI 238

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} Length = 207

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

 Score = 97.9 bits (243), Expect = 1e-25
 Identities = 57/192 (29%), Positives = 92/192 (47%), Gaps = 21/192 (10%)

Query: 20  YLGLFLKKRKQNLQKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKL 79
           Y+ +  K  K      NLT+V+D NE++ RHI DS+ + P ++                 
Sbjct: 27  YVNMLHKWNK----AYNLTSVRDPNEMLVRHILDSIVVAPYLQGERF------------- 69

Query: 80  VDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK 139
           +DVGTG GLPG+ L+I  P+   TLL+S+ KR  FL       +L N++ V+ R E    
Sbjct: 70  IDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPS 129

Query: 140 DVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGA 199
                  +D  ++RA A +  +  +C  L    G F A KG  P++E+       Q+   
Sbjct: 130 ----EPPFDGVISRAFASLNDMVSWCHHLPGEQGRFYALKGQMPEDEIALLPEEYQVESV 185

Query: 200 SLLQLCSVESQS 211
             LQ+ +++ + 
Sbjct: 186 VKLQVPALDGER 197

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	243
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	100.0
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	99.97
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.86
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.85
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.85
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.81
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.81
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.8
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.8
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.8
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.8
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.77
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.77
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.77
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.76
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.76
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.75
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.75
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.74
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.74
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.74
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.74
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.73
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.73
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.73
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.73
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.72
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.72
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.72
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.72
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.72
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.69
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.69
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.69
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.68
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.68
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.67
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.67
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.66
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.65
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.64
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.63
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.63
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.63
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.61
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.61
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.59
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.59
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.59
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.58
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.57
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.57
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.56
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.56
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.56
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.55
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.54
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.52
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.5
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.5
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.49
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.46
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.46
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.44
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.43
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.42
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.38
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	99.37
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	99.36
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	99.35
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.28
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	99.25
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	99.24
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	99.17
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	99.12
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	99.11
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	99.09
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	99.06
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	99.05
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	99.04
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	99.03
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	99.03
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	99.01
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	98.97
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.96
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	98.93
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.92
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.89
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.87
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	98.86
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.76
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	98.58
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.53
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	98.51
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.49
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.47
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	98.27
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	98.17
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	98.08
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	97.95
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.77
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	97.73
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	97.71
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.66
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.62
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.51
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	97.36
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	97.34
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	97.32
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	97.3
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	97.27
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	97.25
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.16
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	97.15
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	96.97
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	96.91
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	96.86
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	96.56
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	96.49
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	96.47
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.41
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	96.4
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	96.38
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.32
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	96.21
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	96.1
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.04
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	96.03
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	95.97
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	95.79
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	95.66
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	95.54
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	95.15
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	95.12
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	95.08
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	95.03
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	94.83
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	94.83
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	94.15
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	93.74
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	93.64
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	93.62
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	93.5
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	93.2
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	92.93
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	92.67
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	92.36
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	92.29
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	91.77
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	91.36
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	91.19
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	91.1
d1vkra_	97	PTS system mannitol-specific EIICBA component {Esc	91.1
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	90.87
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	90.76
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	90.52
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	90.47
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	90.03
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	89.93
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	89.91
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	89.78
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	89.4
d2oo3a1	271	Uncharacterized protein LPG1296 {Legionella pneumo	89.22
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	88.93
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	88.87
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	88.68
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	88.5
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	87.93
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	87.87
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	87.75
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	87.75
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	87.57
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	87.53
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	87.5
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	87.47
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	87.37
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	87.34
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	87.27
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	87.02
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	86.82
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	86.41
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	86.01
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	85.27
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	85.15
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	84.73
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	84.04
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	83.62
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	83.52
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	83.43
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	83.22
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	83.17
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	82.95
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	82.49
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	82.03
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	81.56
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	81.27
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	81.25
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	80.5

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=2.2e-39  Score=267.53  Aligned_cols=222  Identities=37%  Similarity=0.577  Sum_probs=205.5

Q ss_pred             cchHHHHHHHHHHHHHHHHHhccCCccccCChHHHHHHhHhhhcccCCCcccccCccCCCCCCCCCeEEEEcCCCChHHH
Q 026122           12 SVFMFMFFYLGLFLKKRKQNLQKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGL   91 (243)
Q Consensus        12 ~~~~~~~~~l~~~~~~~~~~n~~~n~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~VLDiGcG~G~~~~   91 (243)
                      .+..+..+++..|++++.+||+++|+++..+.+++|.+|++||+.+.++++.          +...+++|||||.|.+|+
T Consensus        17 ~ls~~~~~~l~~y~~lL~~wN~~~NLts~~~~~~i~~rHi~DSl~~~~~~~~----------~~~~~ilDiGSGaGfPGi   86 (239)
T d1xdza_          17 SLSPRQLEQFELYYDMLVEWNEKINLTSITEKKEVYLKHFYDSITAAFYVDF----------NQVNTICDVGAGAGFPSL   86 (239)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHSCCCSCCSHHHHHHHTHHHHHGGGGTSCG----------GGCCEEEEECSSSCTTHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCceEEEecCCHHHHHHHhccchhhhhhhhcc----------cCCCeEEeecCCCchHHH
Confidence            4567888999999999999999999999999999999999999988877641          236799999999999999


Q ss_pred             HHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCcccHHHHHHHHccCccc
Q 026122           92 VLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRV  171 (243)
Q Consensus        92 ~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~~~~~~l~~~~~~Lkp  171 (243)
                      .+|..+|+.+|+.+|.+.+.+.+.+...+.++++|+++++++++++.......++||+|++++++.+..+++.+.+.+++
T Consensus        87 ~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~sRAva~l~~ll~~~~~~l~~  166 (239)
T d1xdza_          87 PIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARAVARLSVLSELCLPLVKK  166 (239)
T ss_dssp             HHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEECCSCHHHHHHHHGGGEEE
T ss_pred             HHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEEhhhhCHHHHHHHHhhhccc
Confidence            99999999999999999999999999999999999999999999876543334689999999999999999999999999


Q ss_pred             CeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEEEecCCCCCceEEEEEEeeCCCCCCCCCCCCCCCCCCC
Q 026122          172 GGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDPGTPAKVPL  243 (243)
Q Consensus       172 gG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~v~~~k~~~~~~~yp~~~~~~~~~p~  243 (243)
                      ||.++++.|....+|+.++.+.++..|+.+..+..+..+..++.|++++++|.+.+|++|||++|.|.|.||
T Consensus       167 ~g~~i~~KG~~~~~El~~a~~~~~~~~~~~~~v~~~~lp~~~~~r~lv~i~K~~~~p~~yPR~~g~p~k~Pl  238 (239)
T d1xdza_         167 NGLFVALKAASAEEELNAGKKAITTLGGELENIHSFKLPIEESDRNIMVIRKIKNTPKKYPRKPGTPNKSPI  238 (239)
T ss_dssp             EEEEEEEECC-CHHHHHHHHHHHHHTTEEEEEEEEEECTTTCCEEEEEEEEECSCCCTTCSCSTTHHHHSCC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHHHcCCEEEEEEEEeCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999998

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=7.9e-31  Score=212.20  Aligned_cols=192  Identities=30%  Similarity=0.438  Sum_probs=160.3

Q ss_pred             cchHHHHHHHHHHHHHHHHHhccCCccccCChHHHHHHhHhhhcccCCCcccccCccCCCCCCCCCeEEEEcCCCChHHH
Q 026122           12 SVFMFMFFYLGLFLKKRKQNLQKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGL   91 (243)
Q Consensus        12 ~~~~~~~~~l~~~~~~~~~~n~~~n~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~VLDiGcG~G~~~~   91 (243)
                      .+...-.+++..|.+++.+||+++|+++.++.+++|.+|++||+.+.++++             +.+|+|+|||.|.+|+
T Consensus        15 ~ls~~q~~~L~~y~~ll~~~N~~~NLts~~~~~~~~~rHi~DSl~~~~~~~-------------~~~ilDiGsGaG~PGi   81 (207)
T d1jsxa_          15 SLTDHQKNQLIAYVNMLHKWNKAYNLTSVRDPNEMLVRHILDSIVVAPYLQ-------------GERFIDVGTGPGLPGI   81 (207)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHGGGCC-------------SSEEEEETCTTTTTHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhCCceeeEECCCHHHHHHHHhcchHhhhhhhc-------------CCceeeeeccCCceee
Confidence            346777899999999999999999999999999999999999999887765             6799999999999999


Q ss_pred             HHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCcccHHHHHHHHccCccc
Q 026122           92 VLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRV  171 (243)
Q Consensus        92 ~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~~~~~~l~~~~~~Lkp  171 (243)
                      .+|..+|+.+|+.+|.+.+.+.++++.++.++++|++++++++++....    .+||+|++++++++..+++.+.+.+++
T Consensus        82 ~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~----~~fD~V~sRA~~~~~~ll~~~~~~l~~  157 (207)
T d1jsxa_          82 PLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSE----PPFDGVISRAFASLNDMVSWCHHLPGE  157 (207)
T ss_dssp             HHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCC----SCEEEEECSCSSSHHHHHHHHTTSEEE
T ss_pred             ehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhccc----cccceehhhhhcCHHHHHHHHHHhcCC
Confidence            9999999999999999999999999999999999999999999997542    579999999999999999999999999


Q ss_pred             CeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEEEecCCCCCceEEEEEEeeC
Q 026122          172 GGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSR  225 (243)
Q Consensus       172 gG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~v~~~k~~  225 (243)
                      +|.++++.|....+|+..+     ..++.+.....+..+..+++|++|+++|.+
T Consensus       158 ~g~~~~~KG~~~~eEl~~~-----~~~~~~~~~~~~~~p~~~~~R~iv~ikk~k  206 (207)
T d1jsxa_         158 QGRFYALKGQMPEDEIALL-----PEEYQVESVVKLQVPALDGERHLVVIKANK  206 (207)
T ss_dssp             EEEEEEEESSCCHHHHHTS-----CTTEEEEEEEEEECC--CCEEEEEEEEECC
T ss_pred             CcEEEEECCCCHHHHHHhh-----hcCCEEEEEEEecCCCCCCcEEEEEEEecc
Confidence            9999999998888877654     346777777778888888999999998863

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.86  E-value=3.8e-21  Score=156.76  Aligned_cols=131  Identities=16%  Similarity=0.179  Sum_probs=105.5

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEE
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      ++++.+|||||||+|..+..++..  +.+|+|+|+|+.|++.|+++++..+.++++++++|+++++...   ++||+|++
T Consensus        13 l~~~~rVLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~---~~fD~v~~   87 (231)
T d1vl5a_          13 LKGNEEVLDVATGGGHVANAFAPF--VKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTD---ERFHIVTC   87 (231)
T ss_dssp             CCSCCEEEEETCTTCHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCT---TCEEEEEE
T ss_pred             CCCcCEEEEecccCcHHHHHHHHh--CCEEEEEECCHHHHhhhhhcccccccccccccccccccccccc---cccccccc
Confidence            355889999999999999888866  4699999999999999999999999989999999999987543   78999999


Q ss_pred             cC----cccHHHHHHHHccCcccCeEEEEEeCC--Cc--HHH------------------HHHHHHHHHHhCCeeeEEEE
Q 026122          153 RA----VAEMRILAEYCLPLVRVGGLFVAAKGH--DP--QEE------------------VKNSERAVQLMGASLLQLCS  206 (243)
Q Consensus       153 ~~----~~~~~~~l~~~~~~LkpgG~l~~~~~~--~~--~~~------------------~~~~~~~l~~~g~~~~~~~~  206 (243)
                      ..    +.++..+++++.++|||||++++....  ..  ...                  ..++.+.++++||.++++..
T Consensus        88 ~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~  167 (231)
T d1vl5a_          88 RIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEELHC  167 (231)
T ss_dssp             ESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHHTCEEEEEEE
T ss_pred             cccccccCCHHHHHHHHHHhcCCCcEEEEEeCCCCCCHHHHHHHHHHHhhcccCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence            75    458999999999999999999986421  11  111                  13456678899998877665


Q ss_pred             Ee
Q 026122          207 VE  208 (243)
Q Consensus       207 ~~  208 (243)
                      ++
T Consensus       168 ~~  169 (231)
T d1vl5a_         168 FH  169 (231)
T ss_dssp             EE
T ss_pred             ee
Confidence            43

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.85  E-value=6.2e-21  Score=156.41  Aligned_cols=131  Identities=14%  Similarity=0.204  Sum_probs=106.6

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEE
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      ++++.+|||||||+|..+..++..  ..+|+|||+|+.|++.|+++++..++.++.++++|+++++...   ++||+|+|
T Consensus        14 ~~~~~rILDiGcGtG~~~~~la~~--~~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~---~~fD~v~~   88 (234)
T d1xxla_          14 CRAEHRVLDIGAGAGHTALAFSPY--VQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPD---DSFDIITC   88 (234)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCT---TCEEEEEE
T ss_pred             CCCCCEEEEeCCcCcHHHHHHHHh--CCeEEEEeCChhhhhhhhhhhcccccccccccccccccccccc---cccceeee
Confidence            466999999999999999999876  3699999999999999999999999988999999999987653   78999999


Q ss_pred             cC----cccHHHHHHHHccCcccCeEEEEEe-CCCcHHH---------------------HHHHHHHHHHhCCeeeEEEE
Q 026122          153 RA----VAEMRILAEYCLPLVRVGGLFVAAK-GHDPQEE---------------------VKNSERAVQLMGASLLQLCS  206 (243)
Q Consensus       153 ~~----~~~~~~~l~~~~~~LkpgG~l~~~~-~~~~~~~---------------------~~~~~~~l~~~g~~~~~~~~  206 (243)
                      ..    ..++..+++++.++|||||++++.. .......                     ..++...++..||.+..+..
T Consensus        89 ~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~~  168 (234)
T d1xxla_          89 RYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQDIQK  168 (234)
T ss_dssp             ESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHTTEEEEEEEE
T ss_pred             eceeecccCHHHHHHHHHHeeCCCcEEEEEEcCCCCCHHHHHHHHHHHhhCCCcccccCCHHHHHHHHHHCCCceeEEEE
Confidence            65    3479999999999999999988754 2111111                     22355667889998877665


Q ss_pred             Ee
Q 026122          207 VE  208 (243)
Q Consensus       207 ~~  208 (243)
                      +.
T Consensus       169 ~~  170 (234)
T d1xxla_         169 WN  170 (234)
T ss_dssp             EE
T ss_pred             ee
Confidence            44

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=3.7e-21  Score=161.32  Aligned_cols=177  Identities=16%  Similarity=0.230  Sum_probs=126.3

Q ss_pred             HHHHHHHHHHHhccCCccccCChHHHHHHhH-hhhcccCCCcccccC-ccCCCC-CCCCCeEEEEcCCCChHHHHHHHHC
Q 026122           21 LGLFLKKRKQNLQKMNLTAVKDVNEVMERHI-DDSLAIIPPIKNSYT-SHCDSS-CNSNLKLVDVGTGAGLPGLVLAIAC   97 (243)
Q Consensus        21 l~~~~~~~~~~n~~~n~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~-~~~~~~-~~~~~~VLDiGcG~G~~~~~la~~~   97 (243)
                      +..|.+.+.+..+...+..+.....+|...+ ++.-.+.|..++... ++.+.. .+.+.+|||+|||||.+++.+|...
T Consensus        51 ~~~~~~~~~rr~~g~PlqYI~G~~~F~~~~~~v~~~VlIPRpeTE~lv~~~l~~~~~~~~~vlDlGtGSG~I~i~la~~~  130 (274)
T d2b3ta1          51 CQQLDALLTRRRDGEPIAHLTGVREFWSLPLFVSPATLIPRPDTECLVEQALARLPEQPCRILDLGTGTGAIALALASER  130 (274)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHSCEEEETTEEEECCTTSCCCCTTHHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhcCcChhhhcCcEEEeeeEEEEeccccccccchhhhhhhHhhhhcccccceeeeehhhhHHHHHHHhhC
Confidence            4555555555555555544444433433332 122233444433221 112111 2346789999999999999999999


Q ss_pred             CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC-----------------------
Q 026122           98 PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-----------------------  154 (243)
Q Consensus        98 ~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~-----------------------  154 (243)
                      |+.+|+|+|+|+.+++.|++|++++++++++++++|+.+...    .++||+|+||.                       
T Consensus       131 p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~~----~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL  206 (274)
T d2b3ta1         131 PDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALA----GQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTAL  206 (274)
T ss_dssp             TTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGT----TCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTT
T ss_pred             CcceeeeccchhHHHhHHHHHHHHhCcccceeeecccccccC----CCceeEEEecchhhhhhhhcccccccccchhhhc
Confidence            999999999999999999999999999889999999977432    26899999972                       


Q ss_pred             ------cccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEE
Q 026122          155 ------VAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQL  204 (243)
Q Consensus       155 ------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~  204 (243)
                            ...+..+++.+.++|+|||.+++..+..+.+.+.+   .++..||..+++
T Consensus       207 ~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~~q~~~v~~---~l~~~gf~~i~~  259 (274)
T d2b3ta1         207 VAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQ---AFILAGYHDVET  259 (274)
T ss_dssp             BCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCHHHHHH---HHHHTTCTTCCE
T ss_pred             ccccccchHHHHHHHHHHHhcCCCCEEEEEECchHHHHHHH---HHHHCCCCeEEE
Confidence                  11267799999999999999999999888766654   445889875544

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=1.3e-19  Score=149.46  Aligned_cols=127  Identities=13%  Similarity=0.134  Sum_probs=103.3

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccccccCCcCCCCceEEEE
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      .++.+|||||||+|..+..+++.. +++|+|||+|+.+++.++++++..++.+ ++++++|+.++..    +++||+|++
T Consensus        32 ~pg~~VLDiGCG~G~~~~~la~~~-~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~----~~~fD~v~~  106 (245)
T d1nkva_          32 KPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA----NEKCDVAAC  106 (245)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC----SSCEEEEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhc-CCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhccc----cCceeEEEE
Confidence            448999999999999999988775 4799999999999999999999999864 9999999998743    278999998


Q ss_pred             cC----cccHHHHHHHHccCcccCeEEEEEeCC----CcH---------------HHHHHHHHHHHHhCCeeeEEE
Q 026122          153 RA----VAEMRILAEYCLPLVRVGGLFVAAKGH----DPQ---------------EEVKNSERAVQLMGASLLQLC  205 (243)
Q Consensus       153 ~~----~~~~~~~l~~~~~~LkpgG~l~~~~~~----~~~---------------~~~~~~~~~l~~~g~~~~~~~  205 (243)
                      ..    +.++..+++++.++|||||++++....    ...               ....++...+.+.||.+....
T Consensus       107 ~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aG~~~v~~~  182 (245)
T d1nkva_         107 VGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDVVEMV  182 (245)
T ss_dssp             ESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHHTTTBCCCEEE
T ss_pred             EehhhccCCHHHHHHHHHHHcCcCcEEEEEeccccCCCChHHHHHHhccCCCcccCCHHHHHHHHHHcCCEEEEEE
Confidence            64    447899999999999999999886420    101               123456777889999876543

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.81  E-value=3e-19  Score=141.65  Aligned_cols=122  Identities=20%  Similarity=0.170  Sum_probs=101.4

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEEE
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      .++.+|||+|||+|.+++.+|+.  ..+|+|+|+++.+++.|++|++++++. +++++++|+.+.....   ..||+|++
T Consensus        32 ~~g~~VLDiGcGsG~~s~~lA~~--~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~---~~~D~v~~  106 (186)
T d1l3ia_          32 GKNDVAVDVGCGTGGVTLELAGR--VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKI---PDIDIAVV  106 (186)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTS---CCEEEEEE
T ss_pred             CCCCEEEEEECCeEccccccccc--ceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhccccc---CCcCEEEE
Confidence            34899999999999999888854  569999999999999999999999995 7999999998876543   68999999


Q ss_pred             cC-cccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeee
Q 026122          153 RA-VAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLL  202 (243)
Q Consensus       153 ~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~  202 (243)
                      +. ......+++.+.+.|||||++++...  ..+....+.+.++..|+...
T Consensus       107 ~~~~~~~~~~~~~~~~~LkpgG~lvi~~~--~~e~~~~~~~~l~~~~~~~~  155 (186)
T d1l3ia_         107 GGSGGELQEILRIIKDKLKPGGRIIVTAI--LLETKFEAMECLRDLGFDVN  155 (186)
T ss_dssp             SCCTTCHHHHHHHHHHTEEEEEEEEEEEC--BHHHHHHHHHHHHHTTCCCE
T ss_pred             eCccccchHHHHHHHHHhCcCCEEEEEee--ccccHHHHHHHHHHcCCCeE
Confidence            86 45688999999999999999887553  23445556677788887543

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.80  E-value=5.9e-19  Score=148.46  Aligned_cols=130  Identities=14%  Similarity=0.113  Sum_probs=105.7

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEE
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      ++++.+|||||||+|..+..+++.. +++|+|||+|+.+++.++++.+..++. +++++++|+.+++..+   ++||+|+
T Consensus        65 l~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~---~sfD~V~  140 (282)
T d2o57a1          65 LQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCED---NSYDFIW  140 (282)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCT---TCEEEEE
T ss_pred             CCCCCEEEEeCCCCcHHHhhhhccC-CcEEEEEeccchhhhhhhcccccccccccccccccccccccccc---cccchhh
Confidence            3558999999999999999999765 679999999999999999999999986 6999999999987653   7899999


Q ss_pred             EcC----cccHHHHHHHHccCcccCeEEEEEeC----CCcHH---------------HHHHHHHHHHHhCCeeeEEEE
Q 026122          152 ARA----VAEMRILAEYCLPLVRVGGLFVAAKG----HDPQE---------------EVKNSERAVQLMGASLLQLCS  206 (243)
Q Consensus       152 ~~~----~~~~~~~l~~~~~~LkpgG~l~~~~~----~~~~~---------------~~~~~~~~l~~~g~~~~~~~~  206 (243)
                      +..    +.++..+++++.++|||||++++...    .....               ...++.+.++++||..+....
T Consensus       141 ~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~i~~~d  218 (282)
T d2o57a1         141 SQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRTFS  218 (282)
T ss_dssp             EESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred             ccchhhhccCHHHHHHHHHHhcCCCcEEEEEEeecCCCCchhHHHHHHHHhccCCCCCHHHHHHHHHHcCCceEEEEE
Confidence            964    45789999999999999999887541    11111               123456678899997766554

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=2.2e-19  Score=146.03  Aligned_cols=128  Identities=16%  Similarity=0.124  Sum_probs=101.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      ++.+|||||||+|..+..++... ..+|+|||+|++|++.|+++++..+..+++++++|++++....   ++||+|++..
T Consensus        60 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~---~~fD~I~~~~  135 (222)
T d2ex4a1          60 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEP---DSYDVIWIQW  135 (222)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCS---SCEEEEEEES
T ss_pred             CCCEEEEeccCCCHhhHHHHHhc-CCEEEEeecCHHHhhcccccccccccccccccccccccccccc---cccccccccc
Confidence            36799999999999987766444 3589999999999999999988887778999999999987543   7899999975


Q ss_pred             cc------cHHHHHHHHccCcccCeEEEEEeCCC------------cHHHHHHHHHHHHHhCCeeeEEEE
Q 026122          155 VA------EMRILAEYCLPLVRVGGLFVAAKGHD------------PQEEVKNSERAVQLMGASLLQLCS  206 (243)
Q Consensus       155 ~~------~~~~~l~~~~~~LkpgG~l~~~~~~~------------~~~~~~~~~~~l~~~g~~~~~~~~  206 (243)
                      +.      +...+++++++.|||||.+++.....            ......++.+.++++||++++.+.
T Consensus       136 ~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii~~~~  205 (222)
T d2ex4a1         136 VIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEER  205 (222)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEE
T ss_pred             ccccchhhhhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEEEEEEE
Confidence            22      34689999999999999999864211            011245677788899999887654

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.80  E-value=1.8e-18  Score=142.40  Aligned_cols=95  Identities=12%  Similarity=0.103  Sum_probs=82.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~-  154 (243)
                      +.+|||||||+|..+..+++.  +.+|+|||+|+.|++.|++++...+. +++++++|+.++...    ++||+|+|.. 
T Consensus        38 ~~~vLDiGCG~G~~~~~l~~~--g~~v~GvD~S~~ml~~A~~~~~~~~~-~v~~~~~d~~~~~~~----~~fD~i~~~~~  110 (246)
T d1y8ca_          38 FDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGL-KPRLACQDISNLNIN----RKFDLITCCLD  110 (246)
T ss_dssp             TTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTC-CCEEECCCGGGCCCS----CCEEEEEECTT
T ss_pred             CCeEEEEeCcCCHHHHHHHHh--CCccEeeccchhhhhhccccccccCc-cceeeccchhhhccc----ccccccceeee
Confidence            679999999999999999876  46999999999999999999888777 599999999998643    7899999842 


Q ss_pred             -------cccHHHHHHHHccCcccCeEEEE
Q 026122          155 -------VAEMRILAEYCLPLVRVGGLFVA  177 (243)
Q Consensus       155 -------~~~~~~~l~~~~~~LkpgG~l~~  177 (243)
                             ..++..+++.+.++|+|||.+++
T Consensus       111 ~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~  140 (246)
T d1y8ca_         111 STNYIIDSDDLKKYFKAVSNHLKEGGVFIF  140 (246)
T ss_dssp             GGGGCCSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             eeeccCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence                   22577899999999999999885

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.80  E-value=1.8e-19  Score=149.68  Aligned_cols=124  Identities=17%  Similarity=0.082  Sum_probs=99.9

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEE
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      ..++.+|||+|||+|.+++.+++.  +++|+|+|+|+.+++.|++|++.++++ ++++++|+.+...    .++||+|++
T Consensus       118 ~~~g~~VLDiGcGsG~l~i~aa~~--g~~V~gvDis~~av~~A~~na~~n~~~-~~~~~~d~~~~~~----~~~fD~V~a  190 (254)
T d2nxca1         118 LRPGDKVLDLGTGSGVLAIAAEKL--GGKALGVDIDPMVLPQAEANAKRNGVR-PRFLEGSLEAALP----FGPFDLLVA  190 (254)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCGGGHHHHHHHHHHTTCC-CEEEESCHHHHGG----GCCEEEEEE
T ss_pred             cCccCEEEEcccchhHHHHHHHhc--CCEEEEEECChHHHHHHHHHHHHcCCc-eeEEecccccccc----ccccchhhh
Confidence            457899999999999999877754  579999999999999999999999985 6889999876432    268999999


Q ss_pred             cCcc-cHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEE
Q 026122          153 RAVA-EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLC  205 (243)
Q Consensus       153 ~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~  205 (243)
                      +... .+..+++.+.+.|||||++++..-  ...+..++.+.++..||.+.+..
T Consensus       191 ni~~~~l~~l~~~~~~~LkpGG~lilSgi--l~~~~~~v~~~~~~~Gf~~~~~~  242 (254)
T d2nxca1         191 NLYAELHAALAPRYREALVPGGRALLTGI--LKDRAPLVREAMAGAGFRPLEEA  242 (254)
T ss_dssp             ECCHHHHHHHHHHHHHHEEEEEEEEEEEE--EGGGHHHHHHHHHHTTCEEEEEE
T ss_pred             ccccccHHHHHHHHHHhcCCCcEEEEEec--chhhHHHHHHHHHHCCCEEEEEE
Confidence            8644 568888999999999999887421  12234556677789999887654

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.77  E-value=1.3e-17  Score=138.19  Aligned_cols=141  Identities=16%  Similarity=0.143  Sum_probs=109.1

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEEE
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      .+..+|||||||+|..+..+++.+|+.+++++|+ +++++.+++++...++. +++++.+|+.+..     +.+||+|++
T Consensus        79 ~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~-----~~~~D~v~~  152 (253)
T d1tw3a2          79 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPL-----PRKADAIIL  152 (253)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCC-----SSCEEEEEE
T ss_pred             ccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhhc-----ccchhheee
Confidence            4467999999999999999999999999999998 67899999999998875 5999999986632     257999998


Q ss_pred             cCcc------cHHHHHHHHccCcccCeEEEEEeCCC------cHH-----------------HHHHHHHHHHHhCCeeeE
Q 026122          153 RAVA------EMRILAEYCLPLVRVGGLFVAAKGHD------PQE-----------------EVKNSERAVQLMGASLLQ  203 (243)
Q Consensus       153 ~~~~------~~~~~l~~~~~~LkpgG~l~~~~~~~------~~~-----------------~~~~~~~~l~~~g~~~~~  203 (243)
                      +.+.      +...+++++++.|||||++++.....      ...                 ...++.+.++++||++++
T Consensus       153 ~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~~~~~~~dl~~~~~~~g~~rt~~e~~~ll~~AGf~~~~  232 (253)
T d1tw3a2         153 SFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEE  232 (253)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEE
T ss_pred             ccccccCCchhhHHHHHHHHHhcCCCcEEEEEeccCCCCCcchhHHHHhhHHHHhhCCCcCCCHHHHHHHHHHCCCeEEE
Confidence            7522      24578999999999999999875311      000                 134667788999999999


Q ss_pred             EEEEecCCCCCceEEEE
Q 026122          204 LCSVESQSPFGQRTAVV  220 (243)
Q Consensus       204 ~~~~~~~~~~~~r~~v~  220 (243)
                      +..+..+..+-...++.
T Consensus       233 v~~~~~p~~~~~~~li~  249 (253)
T d1tw3a2         233 VRQLPSPTIPYDLSLLV  249 (253)
T ss_dssp             EEEEECSSSSCEEEEEE
T ss_pred             EEECCCCCCCccEEEEE
Confidence            88776554443444443

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.77  E-value=4.1e-18  Score=138.57  Aligned_cols=101  Identities=11%  Similarity=0.114  Sum_probs=86.2

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEE
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIA--CPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVA  150 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~--~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I  150 (243)
                      +++.+|||||||+|..+..+++.  .|+++|+|||+|+.|++.|+++++..+.. ++++.++|..+++.     +.+|+|
T Consensus        38 ~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~-----~~~d~i  112 (225)
T d1im8a_          38 TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI-----KNASMV  112 (225)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCC-----CSEEEE
T ss_pred             CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhcccc-----ccceee
Confidence            34789999999999999888875  37889999999999999999998877754 58899999887754     578999


Q ss_pred             EEcC------cccHHHHHHHHccCcccCeEEEEEe
Q 026122          151 VARA------VAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       151 ~~~~------~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      ++..      ..+...+++++++.|||||.+++..
T Consensus       113 ~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~  147 (225)
T d1im8a_         113 ILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSE  147 (225)
T ss_dssp             EEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEeeeccccChhhHHHHHHHHHHhCCCCceeeccc
Confidence            9864      2478899999999999999999864

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.77  E-value=2.9e-17  Score=132.44  Aligned_cols=144  Identities=13%  Similarity=0.025  Sum_probs=104.5

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEE
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      ++++.+|||+|||+|..+..+|...|+++|+|||+|+.|++.+++.+++.+  |+.++.+|.............+|+|+.
T Consensus        54 lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~--ni~~i~~d~~~~~~~~~~~~~vd~v~~  131 (209)
T d1nt2a_          54 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERN--NIIPLLFDASKPWKYSGIVEKVDLIYQ  131 (209)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCS--SEEEECSCTTCGGGTTTTCCCEEEEEE
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccC--CceEEEeeccCccccccccceEEEEEe
Confidence            567999999999999999999998888899999999999999999988764  799999998886544322346777766


Q ss_pred             cC--cccHHHHHHHHccCcccCeEEEEEe-----C-CCcH-HHHHHHHHHHHHhCCeeeEEEEEecCCCCCceEEEEE
Q 026122          153 RA--VAEMRILAEYCLPLVRVGGLFVAAK-----G-HDPQ-EEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVC  221 (243)
Q Consensus       153 ~~--~~~~~~~l~~~~~~LkpgG~l~~~~-----~-~~~~-~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~v~~  221 (243)
                      .-  ..+...++.++.+.|||||++++..     . .... .........+ ..||++.+..  .+..-..++.+|..
T Consensus       132 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~d~~~~~~~~~~~~~~~l-~~gf~i~E~i--~L~P~~~~H~~v~~  206 (209)
T d1nt2a_         132 DIAQKNQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEM-EGDFKIVKHG--SLMPYHRDHIFIHA  206 (209)
T ss_dssp             CCCSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHHH-HTTSEEEEEE--ECTTTCTTEEEEEE
T ss_pred             cccChhhHHHHHHHHHHHhccCCeEEEEEEccccCCCCCHHHHHHHHHHHH-HcCCEEEEEE--ccCCCccCcEEEEE
Confidence            43  3467889999999999999998764     1 1122 2233333333 4699887654  34333445555443

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.76  E-value=1.9e-18  Score=139.58  Aligned_cols=100  Identities=15%  Similarity=0.165  Sum_probs=85.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      ++.+|||||||+|..+..+++.  +.+|+|+|+|++|++.|+++....+. ++.++++|+.+++...   ++||+|++..
T Consensus        37 ~~~~ILDiGcG~G~~~~~la~~--~~~v~giD~S~~~i~~ak~~~~~~~~-~~~~~~~d~~~l~~~~---~~fD~I~~~~  110 (226)
T d1ve3a1          37 KRGKVLDLACGVGGFSFLLEDY--GFEVVGVDISEDMIRKAREYAKSRES-NVEFIVGDARKLSFED---KTFDYVIFID  110 (226)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC-CCEEEECCTTSCCSCT---TCEEEEEEES
T ss_pred             CCCEEEEECCCcchhhhhHhhh--hcccccccccccchhhhhhhhccccc-cccccccccccccccC---cCceEEEEec
Confidence            3789999999999999999864  57999999999999999999888775 4788999999987653   7899999965


Q ss_pred             c------ccHHHHHHHHccCcccCeEEEEEeC
Q 026122          155 V------AEMRILAEYCLPLVRVGGLFVAAKG  180 (243)
Q Consensus       155 ~------~~~~~~l~~~~~~LkpgG~l~~~~~  180 (243)
                      +      .++..+++++.++|||||++++...
T Consensus       111 ~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~  142 (226)
T d1ve3a1         111 SIVHFEPLELNQVFKEVRRVLKPSGKFIMYFT  142 (226)
T ss_dssp             CGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             chhhCChhHHHHHHHHHHHHcCcCcEEEEEEc
Confidence            2      2577899999999999999887653

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.76  E-value=5.2e-18  Score=140.19  Aligned_cols=128  Identities=13%  Similarity=0.136  Sum_probs=105.4

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHcC-CCCEEEEEccccccccCCcCCCCceE
Q 026122           72 SCNSNLKLVDVGTGAGLPGLVLAIA-CPDWKVTLLESMNKRCVFLEHAVSLTQ-LLNVQIVRGRAETLGKDVSFREQYDV  149 (243)
Q Consensus        72 ~~~~~~~VLDiGcG~G~~~~~la~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~fD~  149 (243)
                      .+++|.+|||+|||+|.+++.+|+. .+.++|+++|.++++++.|++++++.+ ..|+++.++|+.+...    ++.||.
T Consensus        82 ~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~----~~~fD~  157 (250)
T d1yb2a1          82 GLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFIS----DQMYDA  157 (250)
T ss_dssp             CCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCC----SCCEEE
T ss_pred             CCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccc----cceeee
Confidence            3567999999999999999999976 467899999999999999999998864 5679999999988643    268999


Q ss_pred             EEEcCcccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEE
Q 026122          150 AVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCS  206 (243)
Q Consensus       150 I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~  206 (243)
                      |+++. .+...+++.+.+.|||||++++....  .+++.+..+.+++.||...+..+
T Consensus       158 V~ld~-p~p~~~l~~~~~~LKpGG~lv~~~P~--i~Qv~~~~~~l~~~gf~~i~~~E  211 (250)
T d1yb2a1         158 VIADI-PDPWNHVQKIASMMKPGSVATFYLPN--FDQSEKTVLSLSASGMHHLETVE  211 (250)
T ss_dssp             EEECC-SCGGGSHHHHHHTEEEEEEEEEEESS--HHHHHHHHHHSGGGTEEEEEEEE
T ss_pred             eeecC-CchHHHHHHHHHhcCCCceEEEEeCC--cChHHHHHHHHHHCCCceeEEEE
Confidence            99864 44567789999999999999887653  35567777888899987665444

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.75  E-value=1.3e-17  Score=140.28  Aligned_cols=100  Identities=16%  Similarity=0.160  Sum_probs=85.8

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccccccCCcCCCCceEEE
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      ++++.+|||||||+|.++..+++.. +++|+|||+|+++++.+++.+++.++.+ +.+...|..+++      ++||.|+
T Consensus        50 l~~g~~VLDiGCG~G~~a~~~a~~~-g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~------~~fD~i~  122 (280)
T d2fk8a1          50 LKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA------EPVDRIV  122 (280)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC------CCCSEEE
T ss_pred             CCCCCEEEEecCCchHHHHHHHHhC-ceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhhc------cchhhhh
Confidence            3559999999999999998888776 5799999999999999999999999864 888888877652      6899999


Q ss_pred             EcC----c--ccHHHHHHHHccCcccCeEEEEEe
Q 026122          152 ARA----V--AEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       152 ~~~----~--~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      +..    +  .++..+++++.++|||||++++..
T Consensus       123 si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~  156 (280)
T d2fk8a1         123 SIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQS  156 (280)
T ss_dssp             EESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             HhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEE
Confidence            964    2  367899999999999999998753

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.75  E-value=3.1e-18  Score=140.90  Aligned_cols=96  Identities=18%  Similarity=0.328  Sum_probs=83.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~-  154 (243)
                      ..+|||||||+|..++.+++.  +.+|+|||+|+.|++.|++++...++ +++++++|+++++..    ++||+|++.. 
T Consensus        42 ~~~iLDiGcGtG~~~~~l~~~--~~~v~gvD~s~~mi~~a~~~~~~~~~-~i~~~~~d~~~l~~~----~~fD~I~~~~~  114 (251)
T d1wzna1          42 VRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNL-KIEFLQGDVLEIAFK----NEFDAVTMFFS  114 (251)
T ss_dssp             CCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC-CCEEEESCGGGCCCC----SCEEEEEECSS
T ss_pred             CCEEEEeCCCCCccchhhccc--ceEEEEEeeccccccccccccccccc-cchheehhhhhcccc----cccchHhhhhh
Confidence            679999999999999998875  57999999999999999999988777 599999999998753    6899999842 


Q ss_pred             ------cccHHHHHHHHccCcccCeEEEEE
Q 026122          155 ------VAEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       155 ------~~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                            ..+...+++++.++|||||++++.
T Consensus       115 ~~~~~~~~~~~~~L~~~~~~LkpgG~lii~  144 (251)
T d1wzna1         115 TIMYFDEEDLRKLFSKVAEALKPGGVFITD  144 (251)
T ss_dssp             GGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhhcCChHHHHHHHHHHHHHcCCCcEEEEE
Confidence                  135678999999999999998873

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.74  E-value=5.1e-17  Score=132.82  Aligned_cols=143  Identities=17%  Similarity=0.116  Sum_probs=104.8

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEE
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      ++++.+|||+|||+|..+..+|...|+..|+|||+|+.|++.+++.++..  .++.++.+|........  ...+|++++
T Consensus        72 ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~--~ni~~i~~d~~~~~~~~--~~~~~v~~i  147 (230)
T d1g8sa_          72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER--ENIIPILGDANKPQEYA--NIVEKVDVI  147 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC--TTEEEEECCTTCGGGGT--TTCCCEEEE
T ss_pred             CCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhh--cccceEEEeeccCcccc--cccceeEEe
Confidence            46699999999999999999999888899999999999999998876654  46788888887765432  234555443


Q ss_pred             --cC--cccHHHHHHHHccCcccCeEEEEEeC-------CCcHHHHHHHHHHHHHhCCeeeEEEEEecCCCCCceEEEEE
Q 026122          153 --RA--VAEMRILAEYCLPLVRVGGLFVAAKG-------HDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVC  221 (243)
Q Consensus       153 --~~--~~~~~~~l~~~~~~LkpgG~l~~~~~-------~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~v~~  221 (243)
                        ..  ..+...++.++.+.|||||.+++..-       ........+..+.|++.||++++..  ++..-..++.+|+.
T Consensus       148 ~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~aGF~ive~i--dL~py~~~H~~vvg  225 (230)
T d1g8sa_         148 YEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKIVDEV--DIEPFEKDHVMFVG  225 (230)
T ss_dssp             EECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEEEEEEE--ECTTTSTTEEEEEE
T ss_pred             eccccchHHHHHHHHHHHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHHHcCCEEEEEe--cCCCCcCCeEEEEE
Confidence              22  34678889999999999999887641       1223445667788899999887654  44333344444443

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.74  E-value=9.8e-18  Score=133.78  Aligned_cols=98  Identities=23%  Similarity=0.230  Sum_probs=86.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  155 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~  155 (243)
                      +++|||||||+|..+..+++.  +.+|+|||+|+.+++.++++++..+++++++...|+.+....    ++||+|+++..
T Consensus        31 ~grvLDiGcG~G~~~~~la~~--g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~----~~fD~I~~~~~  104 (198)
T d2i6ga1          31 PGRTLDLGCGNGRNSLYLAAN--GYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFD----GEYDFILSTVV  104 (198)
T ss_dssp             SCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCC----CCEEEEEEESC
T ss_pred             CCcEEEECCCCCHHHHHHHHH--hhhhccccCcHHHHHHHHHHhhhccccchhhhheeccccccc----ccccEEEEeee
Confidence            569999999999999999975  579999999999999999999999998899999999987653    78999999752


Q ss_pred             ------ccHHHHHHHHccCcccCeEEEEEe
Q 026122          156 ------AEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       156 ------~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                            .....+++.+.++|+|||.+++..
T Consensus       105 ~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  134 (198)
T d2i6ga1         105 MMFLEAQTIPGLIANMQRCTKPGGYNLIVA  134 (198)
T ss_dssp             GGGSCTTHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             eecCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence                  246789999999999999988764

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.74  E-value=3.2e-17  Score=138.43  Aligned_cols=127  Identities=13%  Similarity=0.061  Sum_probs=100.5

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccccccCCcCCCCceEEE
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      +++|.+|||||||+|.+++.+|..+ +++|+||++|+++++.+++.++..++.+ +++...|....      +++||.|+
T Consensus        59 l~~G~~VLDiGCG~G~~~~~~a~~~-g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~------~~~fD~i~  131 (291)
T d1kpia_          59 LEPGMTLLDIGCGWGSTMRHAVAEY-DVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF------DEPVDRIV  131 (291)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC------CCCCSEEE
T ss_pred             CCCCCEEEEecCcchHHHHHHHHhc-CcceeeccchHHHHHHHHHHHHhhccchhhhhhhhccccc------ccccceEe
Confidence            3559999999999999999999887 4799999999999999999999999865 88888887543      27899999


Q ss_pred             EcC----c---------ccHHHHHHHHccCcccCeEEEEEe-C-CCc------------------------------HHH
Q 026122          152 ARA----V---------AEMRILAEYCLPLVRVGGLFVAAK-G-HDP------------------------------QEE  186 (243)
Q Consensus       152 ~~~----~---------~~~~~~l~~~~~~LkpgG~l~~~~-~-~~~------------------------------~~~  186 (243)
                      |..    +         .++..+++.+.++|||||++++.. . ...                              ...
T Consensus       132 sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~~~~~~~~~~~~~p~~~~~~~~fi~kyiFpgg~lps  211 (291)
T d1kpia_         132 SLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGGRLPR  211 (291)
T ss_dssp             EESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTCCCCC
T ss_pred             echhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEeccCcchhhhccCCCchhhcccchHHHHHhcCCCCCCC
Confidence            953    1         247899999999999999988643 1 110                              112


Q ss_pred             HHHHHHHHHHhCCeeeEEEE
Q 026122          187 VKNSERAVQLMGASLLQLCS  206 (243)
Q Consensus       187 ~~~~~~~l~~~g~~~~~~~~  206 (243)
                      +.++...+++.||.+...+.
T Consensus       212 ~~~~~~~~e~~gl~v~~~~~  231 (291)
T d1kpia_         212 ISQVDYYSSNAGWKVERYHR  231 (291)
T ss_dssp             HHHHHHHHHHHTCEEEEEEE
T ss_pred             HHHHHhhhcccccccceeee
Confidence            34556677889998877765

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.74  E-value=7e-18  Score=137.89  Aligned_cols=94  Identities=18%  Similarity=0.247  Sum_probs=78.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~-  154 (243)
                      +.+|||+|||+|..+..++..  +++|+|||+|+.|++.|+++    +..  .++++|+++++...   ++||+|++.. 
T Consensus        43 ~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~----~~~--~~~~~~~~~l~~~~---~~fD~ii~~~~  111 (246)
T d2avna1          43 PCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREK----GVK--NVVEAKAEDLPFPS---GAFEAVLALGD  111 (246)
T ss_dssp             CCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHH----TCS--CEEECCTTSCCSCT---TCEEEEEECSS
T ss_pred             CCEEEEECCCCchhccccccc--ceEEEEeecccccccccccc----ccc--cccccccccccccc---ccccceeeecc
Confidence            789999999999999988864  67999999999999998875    222  36788999987643   7899999853 


Q ss_pred             ----cccHHHHHHHHccCcccCeEEEEEeC
Q 026122          155 ----VAEMRILAEYCLPLVRVGGLFVAAKG  180 (243)
Q Consensus       155 ----~~~~~~~l~~~~~~LkpgG~l~~~~~  180 (243)
                          ..+...+++++.++|||||.+++...
T Consensus       112 ~~~~~~d~~~~l~~i~r~Lk~gG~~ii~~~  141 (246)
T d2avna1         112 VLSYVENKDKAFSEIRRVLVPDGLLIATVD  141 (246)
T ss_dssp             HHHHCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             hhhhhhhHHHHHHHHHhhcCcCcEEEEEEC
Confidence                34889999999999999999888653

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.73  E-value=7.8e-18  Score=141.69  Aligned_cols=102  Identities=23%  Similarity=0.342  Sum_probs=89.0

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEE
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      +++.+|||||||+|..+..++...+ +.+|+|+|+|+.+++.|+++.+..+. +++++++|+.+++..    ++||+|++
T Consensus        26 ~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~-~~~f~~~d~~~~~~~----~~fD~v~~  100 (281)
T d2gh1a1          26 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY-DSEFLEGDATEIELN----DKYDIAIC  100 (281)
T ss_dssp             CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS-EEEEEESCTTTCCCS----SCEEEEEE
T ss_pred             CCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc-ccccccccccccccc----CCceEEEE
Confidence            3478999999999999999998766 47999999999999999999988776 699999999987642    68999999


Q ss_pred             cC----cccHHHHHHHHccCcccCeEEEEEeC
Q 026122          153 RA----VAEMRILAEYCLPLVRVGGLFVAAKG  180 (243)
Q Consensus       153 ~~----~~~~~~~l~~~~~~LkpgG~l~~~~~  180 (243)
                      +.    ..++..+++++.+.|||||.+++..+
T Consensus       101 ~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~~  132 (281)
T d2gh1a1         101 HAFLLHMTTPETMLQKMIHSVKKGGKIICFEP  132 (281)
T ss_dssp             ESCGGGCSSHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             ehhhhcCCCHHHHHHHHHHHcCcCcEEEEEEC
Confidence            76    45789999999999999999988664

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.73  E-value=5.1e-17  Score=129.34  Aligned_cols=103  Identities=17%  Similarity=0.220  Sum_probs=85.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC--EEEEEccccccccCCcCCCCceEEEE
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN--VQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~--v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      ++.+|||+|||+|.+++.++..  ..+|+++|+|+.+++.++++++.+++.+  ++++.+|+.+...    +++||+|++
T Consensus        52 ~~~~VLDiGcG~G~~~~~la~~--~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~----~~~fD~Ii~  125 (194)
T d1dusa_          52 KDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK----DRKYNKIIT  125 (194)
T ss_dssp             TTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT----TSCEEEEEE
T ss_pred             CCCeEEEEeecCChhHHHHHhh--ccccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhc----cCCceEEEE
Confidence            3889999999999999888865  4589999999999999999999998854  8999999877322    268999999


Q ss_pred             cCc----c-cHHHHHHHHccCcccCeEEEEEeCCCc
Q 026122          153 RAV----A-EMRILAEYCLPLVRVGGLFVAAKGHDP  183 (243)
Q Consensus       153 ~~~----~-~~~~~l~~~~~~LkpgG~l~~~~~~~~  183 (243)
                      +..    . ..+.+++.+.++|+|||.++++.....
T Consensus       126 ~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~  161 (194)
T d1dusa_         126 NPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTKQ  161 (194)
T ss_dssp             CCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEESTH
T ss_pred             cccEEecchhhhhHHHHHHHhcCcCcEEEEEEeCcC
Confidence            752    1 357889999999999999988765443

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.73  E-value=9e-17  Score=129.00  Aligned_cols=123  Identities=18%  Similarity=0.084  Sum_probs=98.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  155 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~  155 (243)
                      .-.|||||||+|..++.+|+.+|+..++|||+++.++..+.+.+++.+++|+.++++|+.++... ..++++|.|++...
T Consensus        30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~-~~~~~~d~v~i~fp  108 (204)
T d2fcaa1          30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDV-FEPGEVKRVYLNFS  108 (204)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHH-CCTTSCCEEEEESC
T ss_pred             CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcc-cCchhhhccccccc
Confidence            34799999999999999999999999999999999999999999999999999999999876421 11378999988642


Q ss_pred             cc------------HHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCee
Q 026122          156 AE------------MRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASL  201 (243)
Q Consensus       156 ~~------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~  201 (243)
                      .+            ...+++.+.+.|||||.|++.+.  ...-...+.+.+...++..
T Consensus       109 ~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD--~~~y~~~~~~~~~~~~~~~  164 (204)
T d2fcaa1         109 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTD--NRGLFEYSLKSFSEYGLLL  164 (204)
T ss_dssp             CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEES--CHHHHHHHHHHHHHHTCEE
T ss_pred             cccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEEC--ChHHHHHHHHHHHHCCCcc
Confidence            21            15899999999999999988653  2333344556666777643

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.73  E-value=4.5e-17  Score=137.19  Aligned_cols=99  Identities=17%  Similarity=0.205  Sum_probs=86.6

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEE
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      +++|.+|||||||+|.+++.+|..+ +++|+||++|+++++.+++.++..++. ++++..+|..+++      ++||.|+
T Consensus        60 l~~G~~VLDiGCG~G~~a~~~a~~~-g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~------~~fD~i~  132 (285)
T d1kpga_          60 LQPGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD------EPVDRIV  132 (285)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC------CCCSEEE
T ss_pred             CCCCCEEEEecCcchHHHHHHHhcC-CcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhccc------cccccee
Confidence            3569999999999999999999887 589999999999999999999888875 5999999987763      6899999


Q ss_pred             EcC----c--ccHHHHHHHHccCcccCeEEEEE
Q 026122          152 ARA----V--AEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       152 ~~~----~--~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                      +-.    +  .++..+++++.++|||||++++.
T Consensus       133 si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~  165 (285)
T d1kpga_         133 SIGAFEHFGHERYDAFFSLAHRLLPADGVMLLH  165 (285)
T ss_dssp             EESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEE
T ss_pred             eehhhhhcCchhHHHHHHHHHhhcCCCCcEEEE
Confidence            853    2  36789999999999999998863

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.72  E-value=3.1e-17  Score=136.40  Aligned_cols=125  Identities=16%  Similarity=0.086  Sum_probs=100.7

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHcC---CCCEEEEEccccccccCCcCCCCce
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIA-CPDWKVTLLESMNKRCVFLEHAVSLTQ---LLNVQIVRGRAETLGKDVSFREQYD  148 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~~~~~~~~~~fD  148 (243)
                      ++++.+|||+|||+|.+++.+|+. .|.++|+++|+++++++.|+++++...   ..|++++++|+.+....+   ++||
T Consensus        94 i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~~---~~fD  170 (264)
T d1i9ga_          94 IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPD---GSVD  170 (264)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCT---TCEE
T ss_pred             CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccccccC---CCcc
Confidence            567999999999999999999987 578999999999999999999998752   357999999998876543   7899


Q ss_pred             EEEEcCcccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHH-HhCCeeeE
Q 026122          149 VAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQ-LMGASLLQ  203 (243)
Q Consensus       149 ~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~-~~g~~~~~  203 (243)
                      .|+.. +.++..+++.+.+.|||||++++..+.  .+++..+.+.++ ..||...+
T Consensus       171 aV~ld-lp~P~~~l~~~~~~LkpGG~lv~~~P~--i~Qv~~~~~~l~~~~~f~~i~  223 (264)
T d1i9ga_         171 RAVLD-MLAPWEVLDAVSRLLVAGGVLMVYVAT--VTQLSRIVEALRAKQCWTEPR  223 (264)
T ss_dssp             EEEEE-SSCGGGGHHHHHHHEEEEEEEEEEESS--HHHHHHHHHHHHHHSSBCCCE
T ss_pred             eEEEe-cCCHHHHHHHHHhccCCCCEEEEEeCc--cChHHHHHHHHHHcCCeecce
Confidence            99985 455567889999999999999887754  334555666665 44665433

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.72  E-value=6.5e-17  Score=131.49  Aligned_cols=122  Identities=14%  Similarity=0.096  Sum_probs=95.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~-  154 (243)
                      +.+|||||||+|..+..++..  +.+|+|||+|+++++.|++...    .++++++++++++...    ++||+|++.. 
T Consensus        21 ~~~VLDiGcG~G~~~~~l~~~--g~~v~giD~s~~~i~~a~~~~~----~~~~~~~~~~~~~~~~----~~fD~I~~~~v   90 (225)
T d2p7ia1          21 PGNLLELGSFKGDFTSRLQEH--FNDITCVEASEEAISHAQGRLK----DGITYIHSRFEDAQLP----RRYDNIVLTHV   90 (225)
T ss_dssp             SSCEEEESCTTSHHHHHHTTT--CSCEEEEESCHHHHHHHHHHSC----SCEEEEESCGGGCCCS----SCEEEEEEESC
T ss_pred             CCcEEEEeCCCcHHHHHHHHc--CCeEEEEeCcHHHhhhhhcccc----cccccccccccccccc----cccccccccce
Confidence            679999999999998888754  4689999999999999986532    3699999999987642    7899999976 


Q ss_pred             ---cccHHHHHHHHc-cCcccCeEEEEEeCCCc-H-------------------H----------HHHHHHHHHHHhCCe
Q 026122          155 ---VAEMRILAEYCL-PLVRVGGLFVAAKGHDP-Q-------------------E----------EVKNSERAVQLMGAS  200 (243)
Q Consensus       155 ---~~~~~~~l~~~~-~~LkpgG~l~~~~~~~~-~-------------------~----------~~~~~~~~l~~~g~~  200 (243)
                         +.+...+++++. ++|+|||.+++...... .                   .          ...++.+.++++||+
T Consensus        91 leh~~d~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~~~Gf~  170 (225)
T d2p7ia1          91 LEHIDDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQ  170 (225)
T ss_dssp             GGGCSSHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCE
T ss_pred             eEecCCHHHHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhhhhhhhhhcCccccceeeeeccCHHHHHHHHHHCCCE
Confidence               457889999887 89999999998652110 0                   0          124567778899999


Q ss_pred             eeEEEEE
Q 026122          201 LLQLCSV  207 (243)
Q Consensus       201 ~~~~~~~  207 (243)
                      ++....+
T Consensus       171 i~~~~~~  177 (225)
T d2p7ia1         171 VTYRSGI  177 (225)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            8876543

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.72  E-value=5.3e-17  Score=134.68  Aligned_cols=124  Identities=14%  Similarity=0.127  Sum_probs=96.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  155 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~  155 (243)
                      ..+|||+|||+|.++..++.... .+|++||+|+.|++.|+++...  .++++++++|++++....   ++||+|++..+
T Consensus        94 ~~~vLD~GcG~G~~t~~ll~~~~-~~v~~vD~s~~~l~~a~~~~~~--~~~~~~~~~d~~~~~~~~---~~fD~I~~~~v  167 (254)
T d1xtpa_          94 TSRALDCGAGIGRITKNLLTKLY-ATTDLLEPVKHMLEEAKRELAG--MPVGKFILASMETATLPP---NTYDLIVIQWT  167 (254)
T ss_dssp             CSEEEEETCTTTHHHHHTHHHHC-SEEEEEESCHHHHHHHHHHTTT--SSEEEEEESCGGGCCCCS---SCEEEEEEESC
T ss_pred             CCeEEEecccCChhhHHHHhhcC-ceEEEEcCCHHHHHhhhccccc--cccceeEEccccccccCC---CccceEEeecc
Confidence            67999999999999988776543 4899999999999999876543  345899999999987653   78999999752


Q ss_pred             ----c--cHHHHHHHHccCcccCeEEEEEeCCCc-------------HHHHHHHHHHHHHhCCeeeEEE
Q 026122          156 ----A--EMRILAEYCLPLVRVGGLFVAAKGHDP-------------QEEVKNSERAVQLMGASLLQLC  205 (243)
Q Consensus       156 ----~--~~~~~l~~~~~~LkpgG~l~~~~~~~~-------------~~~~~~~~~~l~~~g~~~~~~~  205 (243)
                          .  +...+++++++.|+|||.+++......             .....++.+.++++||++++.+
T Consensus       168 l~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~aGf~ii~~~  236 (254)
T d1xtpa_         168 AIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEA  236 (254)
T ss_dssp             GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEE
T ss_pred             ccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHHHHHHHHHcCCEEEEEE
Confidence                2  356889999999999999998652111             0123567778889999887654

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.72  E-value=2e-16  Score=128.88  Aligned_cols=147  Identities=14%  Similarity=0.061  Sum_probs=106.4

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEE
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      +++|.+|||+|||+|..+..+|... +.++|+|+|+|+.+++.++++++..+  ++..+..|.............+|+|+
T Consensus        71 i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~--~~~~i~~d~~~~~~~~~~~~~vD~i~  148 (227)
T d1g8aa_          71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERR--NIVPILGDATKPEEYRALVPKVDVIF  148 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCT--TEEEEECCTTCGGGGTTTCCCEEEEE
T ss_pred             cCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcC--CceEEEEECCCcccccccccceEEEE
Confidence            4679999999999999999999875 67899999999999999998876543  57778888765433222236799998


Q ss_pred             EcC--cccHHHHHHHHccCcccCeEEEEEe-C-----CCcHHHHHHHHHHHHHhCCeeeEEEEEecCCCCCceEEEEEEe
Q 026122          152 ARA--VAEMRILAEYCLPLVRVGGLFVAAK-G-----HDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLK  223 (243)
Q Consensus       152 ~~~--~~~~~~~l~~~~~~LkpgG~l~~~~-~-----~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~v~~~k  223 (243)
                      +.-  ......+++++.+.|||||++++.. .     ....+++....+.+.+.||++.+.  +.+.....++.+++++|
T Consensus       149 ~d~~~~~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~~v~~l~~~gf~iie~--i~L~p~~~~H~~vv~rK  226 (227)
T d1g8aa_         149 EDVAQPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERELSEYFEVIER--LNLEPYEKDHALFVVRK  226 (227)
T ss_dssp             ECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHHHTTSEEEEE--EECTTTSSSEEEEEEEC
T ss_pred             EEccccchHHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHHHHHHHHHHHHcCCEEEEE--EcCCCCCCceEEEEEEe
Confidence            863  3456889999999999999988764 1     112333333344455679988765  34444445666677665

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.72  E-value=5.1e-17  Score=135.55  Aligned_cols=127  Identities=18%  Similarity=0.195  Sum_probs=104.9

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEE
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVA  150 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I  150 (243)
                      ++++.+|||+|||+|.++..+|+.. |+++|+++|+++++++.|++++++.++. ++.+...|+.....    ...||.|
T Consensus       101 i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~----~~~~D~V  176 (266)
T d1o54a_         101 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFD----EKDVDAL  176 (266)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCS----CCSEEEE
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecccccccc----ccceeee
Confidence            5669999999999999999999875 6789999999999999999999999984 68999888765322    2679999


Q ss_pred             EEcCcccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEE
Q 026122          151 VARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCS  206 (243)
Q Consensus       151 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~  206 (243)
                      +.. ..++..+++.+.+.|||||++++....  .+++.++.+.+++.||...+..+
T Consensus       177 ~~d-~p~p~~~l~~~~~~LKpGG~lv~~~P~--~~Qv~~~~~~l~~~gF~~i~~~E  229 (266)
T d1o54a_         177 FLD-VPDPWNYIDKCWEALKGGGRFATVCPT--TNQVQETLKKLQELPFIRIEVWE  229 (266)
T ss_dssp             EEC-CSCGGGTHHHHHHHEEEEEEEEEEESS--HHHHHHHHHHHHHSSEEEEEEEC
T ss_pred             Eec-CCCHHHHHHHHHhhcCCCCEEEEEeCc--ccHHHHHHHHHHHCCceeEEEEE
Confidence            875 456678899999999999999887653  45667778888899987655443

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.69  E-value=1.9e-17  Score=130.64  Aligned_cols=102  Identities=10%  Similarity=-0.114  Sum_probs=82.9

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCC------------CCEEEEEccccccccCC
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL------------LNVQIVRGRAETLGKDV  141 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------------~~v~~~~~d~~~~~~~~  141 (243)
                      +++.+|||+|||+|..++.+|..  +++|+|+|+|+.|++.|++.++..+.            .+++++++|+.++....
T Consensus        19 ~~~~rvLd~GCG~G~~a~~la~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~   96 (201)
T d1pjza_          19 VPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARD   96 (201)
T ss_dssp             CTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHH
T ss_pred             CCCCEEEEecCcCCHHHHHHHHc--CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccccccccc
Confidence            34899999999999999999976  68999999999999999998865432            23578888888876432


Q ss_pred             cCCCCceEEEEcCc------ccHHHHHHHHccCcccCeEEEEEe
Q 026122          142 SFREQYDVAVARAV------AEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       142 ~~~~~fD~I~~~~~------~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                        ...||+|++...      .+...+++.+.+.|||||.+++..
T Consensus        97 --~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~  138 (201)
T d1pjza_          97 --IGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLIT  138 (201)
T ss_dssp             --HHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred             --ccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEE
Confidence              257999998652      246889999999999999987654

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.69  E-value=1.3e-16  Score=127.69  Aligned_cols=115  Identities=16%  Similarity=0.211  Sum_probs=90.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~-  154 (243)
                      +.+|||||||+|..+..++      +++|||+|+.+++.++++       +++++++|+++++..+   ++||+|++.. 
T Consensus        37 ~~~vLDiGcG~G~~~~~~~------~~~giD~s~~~~~~a~~~-------~~~~~~~d~~~l~~~~---~~fD~I~~~~~  100 (208)
T d1vlma_          37 EGRGVEIGVGTGRFAVPLK------IKIGVEPSERMAEIARKR-------GVFVLKGTAENLPLKD---ESFDFALMVTT  100 (208)
T ss_dssp             SSCEEEETCTTSTTHHHHT------CCEEEESCHHHHHHHHHT-------TCEEEECBTTBCCSCT---TCEEEEEEESC
T ss_pred             CCeEEEECCCCcccccccc------eEEEEeCChhhccccccc-------cccccccccccccccc---ccccccccccc
Confidence            5689999999998865543      479999999999988763       5899999999987653   7899999975 


Q ss_pred             ---cccHHHHHHHHccCcccCeEEEEEeCCCc-H--H------------------HHHHHHHHHHHhCCeeeEEEE
Q 026122          155 ---VAEMRILAEYCLPLVRVGGLFVAAKGHDP-Q--E------------------EVKNSERAVQLMGASLLQLCS  206 (243)
Q Consensus       155 ---~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-~--~------------------~~~~~~~~l~~~g~~~~~~~~  206 (243)
                         +.++..+++++.++|+|||.+++...... .  .                  ...++.+.++++||+.+++..
T Consensus       101 l~h~~d~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i~v~~  176 (208)
T d1vlma_         101 ICFVDDPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQ  176 (208)
T ss_dssp             GGGSSCHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred             cccccccccchhhhhhcCCCCceEEEEecCCcchhHHhhhhccccccccccccCCCHHHHHHHHHHcCCeEEEEEE
Confidence               45789999999999999999888652111 0  0                  124567778899998877655

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.69  E-value=5.7e-17  Score=131.09  Aligned_cols=103  Identities=18%  Similarity=0.268  Sum_probs=85.3

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEE
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      ++++.+|||||||+|..+..+|+.. +.++|+++|+++++++.++++.+..++.|+.++++|..+.....   ++||+|+
T Consensus        73 l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~---~~fD~I~  149 (213)
T d1dl5a1          73 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEF---SPYDVIF  149 (213)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGG---CCEEEEE
T ss_pred             ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccccc---cchhhhh
Confidence            5679999999999999999998765 57899999999999999999999999999999999988765442   6899999


Q ss_pred             EcCcccHHHHHHHHccCcccCeEEEEEeC
Q 026122          152 ARAVAEMRILAEYCLPLVRVGGLFVAAKG  180 (243)
Q Consensus       152 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  180 (243)
                      +.+...  .+.+.+.+.|||||++++..+
T Consensus       150 ~~~~~~--~~p~~l~~~LkpGG~lv~pv~  176 (213)
T d1dl5a1         150 VTVGVD--EVPETWFTQLKEGGRVIVPIN  176 (213)
T ss_dssp             ECSBBS--CCCHHHHHHEEEEEEEEEEBC
T ss_pred             hhccHH--HhHHHHHHhcCCCcEEEEEEC
Confidence            976321  122345677999999988654

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.68  E-value=5.9e-16  Score=124.14  Aligned_cols=125  Identities=14%  Similarity=0.062  Sum_probs=99.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  155 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~  155 (243)
                      ...|||||||+|...+.+|+.+|+..++|||+++.++..+.+.+.+.+++|+.++.+|+.++.... ...++|.|+++-.
T Consensus        32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~-~~~~~~~i~i~fP  110 (204)
T d1yzha1          32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYF-EDGEIDRLYLNFS  110 (204)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTS-CTTCCSEEEEESC
T ss_pred             CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhc-cCCceehhccccc
Confidence            447999999999999999999999999999999999999999999999999999999998875321 1368999988642


Q ss_pred             cc------------HHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeE
Q 026122          156 AE------------MRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQ  203 (243)
Q Consensus       156 ~~------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~  203 (243)
                      .+            ...+++.+.+.|||||.+++.+..  ..-...+.+.+...++....
T Consensus       111 dPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD~--~~Y~~~~le~~~~~~~~~~~  168 (204)
T d1yzha1         111 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDN--RGLFEYSLVSFSQYGMKLNG  168 (204)
T ss_dssp             CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESC--HHHHHHHHHHHHHHTCEEEE
T ss_pred             ccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEECC--ccHHHHHHHHHHHCCccccc
Confidence            21            278999999999999999886642  22334445666677775443

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.68  E-value=1.6e-16  Score=131.21  Aligned_cols=103  Identities=15%  Similarity=0.073  Sum_probs=84.2

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEEE
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      +++.+|||||||+|..+..++.. +..+|+|||+|+.|++.|++..+..+.. ++.+.++|+.......  .++||+|++
T Consensus        23 ~~~~~VLDlGCG~G~~~~~~~~~-~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~--~~~fD~V~~   99 (252)
T d1ri5a_          23 KRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDL--GKEFDVISS   99 (252)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCC--SSCEEEEEE
T ss_pred             CCcCEEEEecccCcHHHHHHHHc-CCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccc--cccceEEEE
Confidence            34889999999999988888876 3468999999999999999988877764 5999999997654421  368999999


Q ss_pred             cCc--------ccHHHHHHHHccCcccCeEEEEEe
Q 026122          153 RAV--------AEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       153 ~~~--------~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      ...        .++..+++.+.++|||||.+++..
T Consensus       100 ~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~  134 (252)
T d1ri5a_         100 QFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTV  134 (252)
T ss_dssp             ESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             cceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEe
Confidence            642        235789999999999999988754

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=4.8e-16  Score=132.87  Aligned_cols=129  Identities=14%  Similarity=0.119  Sum_probs=97.9

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHcC-----------CCCEEEEEccccccccC
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIA-CPDWKVTLLESMNKRCVFLEHAVSLTQ-----------LLNVQIVRGRAETLGKD  140 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~-----------~~~v~~~~~d~~~~~~~  140 (243)
                      +.+|.+|||+|||+|.+++.+|+. .|+++|+++|+++++++.|++|+++.+           ..|+.+.++|+.+....
T Consensus        96 i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~~  175 (324)
T d2b25a1          96 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATED  175 (324)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC--
T ss_pred             CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhcccc
Confidence            466999999999999999999976 477899999999999999999998642           24699999999876432


Q ss_pred             CcCCCCceEEEEcCcccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEE
Q 026122          141 VSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLC  205 (243)
Q Consensus       141 ~~~~~~fD~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~  205 (243)
                      . ....||.|+... +++..++..+.+.|||||++++..+.  ..++..+.+.|+..++....++
T Consensus       176 ~-~~~~fD~V~LD~-p~P~~~l~~~~~~LKpGG~lv~~~P~--i~Qv~~~~~~l~~~~~~f~~i~  236 (324)
T d2b25a1         176 I-KSLTFDAVALDM-LNPHVTLPVFYPHLKHGGVCAVYVVN--ITQVIELLDGIRTCELALSCEK  236 (324)
T ss_dssp             ------EEEEEECS-SSTTTTHHHHGGGEEEEEEEEEEESS--HHHHHHHHHHHHHHTCCEEEEE
T ss_pred             c-CCCCcceEeecC-cCHHHHHHHHHHhccCCCEEEEEeCC--HHHHHHHHHHHHHcCCCceeeE
Confidence            1 125799999853 44556889999999999999987753  3456667777877664444443

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.67  E-value=2.8e-15  Score=124.21  Aligned_cols=129  Identities=17%  Similarity=0.156  Sum_probs=101.9

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEEE
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      ++..+|||||||+|..+..+++.+|+.+++++|+ +++++.++++++..++. +++++.+|..+..     +.+||+|++
T Consensus        80 ~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~-----p~~~D~v~~  153 (256)
T d1qzza2          80 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPL-----PVTADVVLL  153 (256)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCC-----SCCEEEEEE
T ss_pred             ccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccccc-----cccchhhhc
Confidence            4467999999999999999999999999999997 78899999999988875 4999999987521     256999998


Q ss_pred             cCcc------cHHHHHHHHccCcccCeEEEEEeCC----C-cHH-------------------HHHHHHHHHHHhCCeee
Q 026122          153 RAVA------EMRILAEYCLPLVRVGGLFVAAKGH----D-PQE-------------------EVKNSERAVQLMGASLL  202 (243)
Q Consensus       153 ~~~~------~~~~~l~~~~~~LkpgG~l~~~~~~----~-~~~-------------------~~~~~~~~l~~~g~~~~  202 (243)
                      ..+.      +...+++++++.|||||++++....    . ...                   ...++.+.++++||+++
T Consensus       154 ~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~~~~~~~~d~~ml~~~~g~~rt~~e~~~ll~~AGf~~~  233 (256)
T d1qzza2         154 SFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALA  233 (256)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEEE
T ss_pred             cccccccCcHHHHHHHHHHHhhcCCcceeEEEEeccCCCCcccHHHHHHHHHHHHhhCCCccCCHHHHHHHHHHCCCcee
Confidence            6521      3467899999999999999987531    1 000                   12457778889999988


Q ss_pred             EEEEEe
Q 026122          203 QLCSVE  208 (243)
Q Consensus       203 ~~~~~~  208 (243)
                      ++..+.
T Consensus       234 ~~~~~~  239 (256)
T d1qzza2         234 SERTSG  239 (256)
T ss_dssp             EEEEEC
T ss_pred             EEEEeC
Confidence            876644

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.66  E-value=9.4e-16  Score=127.37  Aligned_cols=126  Identities=16%  Similarity=0.177  Sum_probs=100.5

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccccccCCcCCCCceEEE
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      ++++.+|||+|||+|.+++.+|+. ++++|+++|+|+.+++.+++|++.+++.+ ++++++|+.++...    +.||.|+
T Consensus       105 ~~~g~~VlD~~aG~G~~~l~~a~~-~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~----~~~D~Ii  179 (260)
T d2frna1         105 AKPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGE----NIADRIL  179 (260)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCC----SCEEEEE
T ss_pred             cCCccEEEECcceEcHHHHHHHHh-CCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccC----CCCCEEE
Confidence            467999999999999999999876 56799999999999999999999999976 99999999987653    6799999


Q ss_pred             EcCcccHHHHHHHHccCcccCeEEEEEe---CC-CcHHHHHHHHHHHHHhCCeeeE
Q 026122          152 ARAVAEMRILAEYCLPLVRVGGLFVAAK---GH-DPQEEVKNSERAVQLMGASLLQ  203 (243)
Q Consensus       152 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~---~~-~~~~~~~~~~~~l~~~g~~~~~  203 (243)
                      ++....-..+++.+.+.|++||.+.+..   .. ........+.+..+..|+.+..
T Consensus       180 ~~~p~~~~~~l~~a~~~l~~gG~lh~~~~~~~~~~~~~~~e~~~~~~~~~g~~v~~  235 (260)
T d2frna1         180 MGYVVRTHEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEK  235 (260)
T ss_dssp             ECCCSSGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEE
T ss_pred             ECCCCchHHHHHHHHhhcCCCCEEEEEeccccccchhhHHHHHHHHHHHcCCceEE
Confidence            9866556678888889999999986543   11 1122234445566688987643

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=3.2e-16  Score=130.78  Aligned_cols=101  Identities=19%  Similarity=0.165  Sum_probs=82.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  155 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~  155 (243)
                      +.+|||||||+|..+..++...++.+++|+|+|+.+++.|++.     ..+++++++|+.+++..+   ++||+|++...
T Consensus        85 ~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~-----~~~~~~~~~d~~~l~~~~---~sfD~v~~~~~  156 (268)
T d1p91a_          85 ATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKR-----YPQVTFCVASSHRLPFSD---TSMDAIIRIYA  156 (268)
T ss_dssp             CCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHH-----CTTSEEEECCTTSCSBCT---TCEEEEEEESC
T ss_pred             CCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcc-----cccccceeeehhhccCCC---CCEEEEeecCC
Confidence            7899999999999999999888899999999999999988764     246899999999988654   78999998653


Q ss_pred             ccHHHHHHHHccCcccCeEEEEEe-CCCcHHHH
Q 026122          156 AEMRILAEYCLPLVRVGGLFVAAK-GHDPQEEV  187 (243)
Q Consensus       156 ~~~~~~l~~~~~~LkpgG~l~~~~-~~~~~~~~  187 (243)
                      ..   .++++.|+|||||.+++.. +.+...++
T Consensus       157 ~~---~~~e~~rvLkpgG~l~~~~p~~~~l~el  186 (268)
T d1p91a_         157 PC---KAEELARVVKPGGWVITATPGPRHLMEL  186 (268)
T ss_dssp             CC---CHHHHHHHEEEEEEEEEEEECTTTTHHH
T ss_pred             HH---HHHHHHHHhCCCcEEEEEeeCCcchHHH
Confidence            32   1467889999999999877 44444443

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=6.9e-16  Score=125.67  Aligned_cols=102  Identities=13%  Similarity=0.024  Sum_probs=82.8

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC-----------------CCCEEEEEccccc
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ-----------------LLNVQIVRGRAET  136 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-----------------~~~v~~~~~d~~~  136 (243)
                      +++.+|||+|||+|..+..+|..  +++|+|||+|+.+++.+++......                 ..+++++++|+.+
T Consensus        44 ~~~~rvLd~GCG~G~~a~~LA~~--G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  121 (229)
T d2bzga1          44 KSGLRVFFPLCGKAVEMKWFADR--GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFD  121 (229)
T ss_dssp             CCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGG
T ss_pred             CCCCEEEEeCCCCcHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhh
Confidence            34789999999999999999975  6899999999999998887654211                 1358999999988


Q ss_pred             cccCCcCCCCceEEEEcC------cccHHHHHHHHccCcccCeEEEEEe
Q 026122          137 LGKDVSFREQYDVAVARA------VAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       137 ~~~~~~~~~~fD~I~~~~------~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      +....  .+.||+|+...      ......+++.+.++|||||++++..
T Consensus       122 l~~~~--~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~  168 (229)
T d2bzga1         122 LPRTN--IGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCV  168 (229)
T ss_dssp             GGGSC--CCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ccccc--cCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEE
Confidence            76532  37899999864      2467899999999999999977654

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.6e-15  Score=124.84  Aligned_cols=132  Identities=17%  Similarity=0.113  Sum_probs=89.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-----------------------------
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-----------------------------  126 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-----------------------------  126 (243)
                      +.+|||||||+|..++.++... ..+|+|+|+|+.+++.|+++++..+...                             
T Consensus        52 g~~vLDlGcG~G~~~~~~~~~~-~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (257)
T d2a14a1          52 GDTLIDIGSGPTIYQVLAACDS-FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAA  130 (257)
T ss_dssp             EEEEEESSCTTCCGGGTTGGGT-EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCHhHHHHhccc-cCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHhhh
Confidence            7799999999999876666542 3489999999999999999987654321                             


Q ss_pred             E-EEEEccccc-cccCCcCCCCceEEEEcCc--------ccHHHHHHHHccCcccCeEEEEEeCCC-------------c
Q 026122          127 V-QIVRGRAET-LGKDVSFREQYDVAVARAV--------AEMRILAEYCLPLVRVGGLFVAAKGHD-------------P  183 (243)
Q Consensus       127 v-~~~~~d~~~-~~~~~~~~~~fD~I~~~~~--------~~~~~~l~~~~~~LkpgG~l~~~~~~~-------------~  183 (243)
                      + .....+... ....+...++||+|++...        .++..+++.+.++|||||.+++..-..             .
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~~~~~~~  210 (257)
T d2a14a1         131 VKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCV  210 (257)
T ss_dssp             EEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECC
T ss_pred             hhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccceecccccccc
Confidence            0 111111111 1011111368999998542        356789999999999999988764111             0


Q ss_pred             HHHHHHHHHHHHHhCCeeeEEEEEe
Q 026122          184 QEEVKNSERAVQLMGASLLQLCSVE  208 (243)
Q Consensus       184 ~~~~~~~~~~l~~~g~~~~~~~~~~  208 (243)
                      .-...++.+.++++||++++++...
T Consensus       211 ~~~~~~~~~~l~~aGf~v~~~~~~~  235 (257)
T d2a14a1         211 ALEKGEVEQAVLDAGFDIEQLLHSP  235 (257)
T ss_dssp             CCCHHHHHHHHHHTTEEEEEEEEEC
T ss_pred             CCCHHHHHHHHHHCCCEEEEEEEec
Confidence            1124566777889999988876543

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.3e-15  Score=123.80  Aligned_cols=105  Identities=20%  Similarity=0.210  Sum_probs=84.8

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHcCC-----CCEEEEEccccccccCCcCCC
Q 026122           72 SCNSNLKLVDVGTGAGLPGLVLAIA-CPDWKVTLLESMNKRCVFLEHAVSLTQL-----LNVQIVRGRAETLGKDVSFRE  145 (243)
Q Consensus        72 ~~~~~~~VLDiGcG~G~~~~~la~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~v~~~~~d~~~~~~~~~~~~  145 (243)
                      .++++.+|||||||+|..+..+|+. .+.++|+++|+++++++.|++++++.++     .+++++.+|........   .
T Consensus        73 ~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~---~  149 (224)
T d1i1na_          73 QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEE---A  149 (224)
T ss_dssp             TSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGG---C
T ss_pred             ccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccchh---h
Confidence            4677999999999999999888875 4578999999999999999999987654     46899999988765542   6


Q ss_pred             CceEEEEcCcccHHHHHHHHccCcccCeEEEEEeCC
Q 026122          146 QYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGH  181 (243)
Q Consensus       146 ~fD~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  181 (243)
                      +||.|++.+...  .+.+.+.+.|||||++++..+.
T Consensus       150 ~fD~I~~~~~~~--~ip~~l~~~LkpGG~LV~pv~~  183 (224)
T d1i1na_         150 PYDAIHVGAAAP--VVPQALIDQLKPGGRLILPVGP  183 (224)
T ss_dssp             CEEEEEECSBBS--SCCHHHHHTEEEEEEEEEEESC
T ss_pred             hhhhhhhhcchh--hcCHHHHhhcCCCcEEEEEEcc
Confidence            899999986332  2234566799999999987653

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.63  E-value=2.4e-15  Score=125.26  Aligned_cols=168  Identities=14%  Similarity=0.110  Sum_probs=113.5

Q ss_pred             HHHHHHHHHHHHhccCCccccCChHHHHHHhH-hhhcccCCCcccccC-ccCCCCC--CCCCeEEEEcCCCChHHHHHHH
Q 026122           20 YLGLFLKKRKQNLQKMNLTAVKDVNEVMERHI-DDSLAIIPPIKNSYT-SHCDSSC--NSNLKLVDVGTGAGLPGLVLAI   95 (243)
Q Consensus        20 ~l~~~~~~~~~~n~~~n~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~-~~~~~~~--~~~~~VLDiGcG~G~~~~~la~   95 (243)
                      .+..|.+.+.+.-+...+..+.+..++|...| ++.-.+.|..++.++ ++.+..+  .+..+|+|+|||+|..++.++.
T Consensus        51 ~~~~~~~~i~rR~~~~Pl~YI~g~~~F~~~~f~v~~~vlIPRpeTE~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~  130 (271)
T d1nv8a_          51 EEKRILELVEKRASGYPLHYILGEKEFMGLSFLVEEGVFVPRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAK  130 (271)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHTEEEETTEEEECCTTSCCCCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCCCChhhhcCcEEEeeeEEEEecCccCchhhhhhhhhhhhhhhccccccEEEEeeeeeehhhhhhhh
Confidence            45666666666666666555555555554443 233333444443221 1111111  1246899999999999988885


Q ss_pred             HCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccccccCCcCCCCceEEEEcCc-------------------
Q 026122           96 ACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAVARAV-------------------  155 (243)
Q Consensus        96 ~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~fD~I~~~~~-------------------  155 (243)
                       .|+++|+++|+|+++++.|++|++++++.+ +.+..+|+.+....  ..++||+|+||..                   
T Consensus       131 -~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~--~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~A  207 (271)
T d1nv8a_         131 -FSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKE--KFASIEMILSNPPYVKSSAHLPKDVLFEPPEA  207 (271)
T ss_dssp             -HSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGG--GTTTCCEEEECCCCBCGGGSCTTSCCCSCHHH
T ss_pred             -cccceeeechhhhhHHHHHHHHHHHcCCCceeEEeeccccccccc--ccCcccEEEEcccccCcccccceeeeeccccc
Confidence             588999999999999999999999999865 88889998775432  1268999999720                   


Q ss_pred             ----c-cHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHH
Q 026122          156 ----A-EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNS  190 (243)
Q Consensus       156 ----~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~  190 (243)
                          . .+.-+-+-+.++|+|||.++++.|..+.+.+.++
T Consensus       208 L~gg~dGl~~~r~i~~~~L~~~G~l~~Eig~~Q~~~v~~l  247 (271)
T d1nv8a_         208 LFGGEDGLDFYREFFGRYDTSGKIVLMEIGEDQVEELKKI  247 (271)
T ss_dssp             HBCTTTSCHHHHHHHHHCCCTTCEEEEECCTTCHHHHTTT
T ss_pred             cccccchHHHHHHHHHHhcCCCCEEEEEECHHHHHHHHHH
Confidence                0 0122222345789999999999999888777654

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.61  E-value=4.8e-15  Score=126.50  Aligned_cols=125  Identities=21%  Similarity=0.160  Sum_probs=95.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccC-CcCCCCceEEEEc
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD-VSFREQYDVAVAR  153 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~~~fD~I~~~  153 (243)
                      ++.+|||+|||+|..++.+|..  +.+|+++|+|+.+++.+++|++.+|+.+++++++|+.++... ....++||+|+++
T Consensus       145 ~g~rVLDl~~gtG~~s~~~a~g--~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~D  222 (318)
T d1wxxa2         145 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD  222 (318)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCCeeeccCCCCcHHHHHHHhc--CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEc
Confidence            4889999999999999888753  679999999999999999999999998899999998774221 0113689999996


Q ss_pred             C-------------cccHHHHHHHHccCcccCeEEEEEeCC--CcHHHHHHH-HHHHHHhCCee
Q 026122          154 A-------------VAEMRILAEYCLPLVRVGGLFVAAKGH--DPQEEVKNS-ERAVQLMGASL  201 (243)
Q Consensus       154 ~-------------~~~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~~-~~~l~~~g~~~  201 (243)
                      .             ...+.+++..+.++|+|||.+++....  -..+++.++ .+....+|-.+
T Consensus       223 pP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~~~~~~f~~~v~~a~~~a~~~~  286 (318)
T d1wxxa2         223 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHRLL  286 (318)
T ss_dssp             CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred             CCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcccCHHHHHHHHHHHHHHcCCCE
Confidence            3             124678899999999999999887753  233344333 34445555443

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=4.1e-16  Score=127.16  Aligned_cols=128  Identities=12%  Similarity=0.086  Sum_probs=92.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~-  154 (243)
                      +.+|||||||+|..+..+++.. ..+|++||+|+.+++.|+++.+..+. ++.++.+++....... ..++||.|+... 
T Consensus        54 g~~VLdIGcG~G~~a~~~a~~~-~~~v~~id~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~fD~i~fD~~  130 (229)
T d1zx0a1          54 GGRVLEVGFGMAIAASKVQEAP-IDEHWIIECNDGVFQRLRDWAPRQTH-KVIPLKGLWEDVAPTL-PDGHFDGILYDTY  130 (229)
T ss_dssp             CEEEEEECCTTSHHHHHHHTSC-EEEEEEEECCHHHHHHHHHHGGGCSS-EEEEEESCHHHHGGGS-CTTCEEEEEECCC
T ss_pred             CCeEEEeeccchHHHHHHHHcC-CCeEEEeCCCHHHHHHHHHHhhhccc-cccccccccccccccc-ccccccceeeccc
Confidence            7899999999999998888654 46899999999999999998776554 4778888876653321 136899998643 


Q ss_pred             --------cccHHHHHHHHccCcccCeEEEEEeCC----------Cc-HH-HHHHHHHHHHHhCCeeeEEEE
Q 026122          155 --------VAEMRILAEYCLPLVRVGGLFVAAKGH----------DP-QE-EVKNSERAVQLMGASLLQLCS  206 (243)
Q Consensus       155 --------~~~~~~~l~~~~~~LkpgG~l~~~~~~----------~~-~~-~~~~~~~~l~~~g~~~~~~~~  206 (243)
                              ..+...+++++.++|||||.|++....          .. .. --......+.++||+...+..
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~agF~~~~i~~  202 (229)
T d1zx0a1         131 PLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITIMFEETQVPALLEAGFRRENIRT  202 (229)
T ss_dssp             CCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSCHHHHHHHHTHHHHHHTTCCGGGEEE
T ss_pred             ccccccccccCHHHHHHHHHHHcCCCcEEEEEecCCcchhhhhhhhhcchhhhhHHHHHHHHCCCeeEEEEE
Confidence                    235788999999999999998874310          01 11 112334556788998766543

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.59  E-value=2.6e-15  Score=128.54  Aligned_cols=129  Identities=18%  Similarity=0.113  Sum_probs=96.8

Q ss_pred             CCCCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCC-cCCCCce
Q 026122           71 SSCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDV-SFREQYD  148 (243)
Q Consensus        71 ~~~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~-~~~~~fD  148 (243)
                      +.++++.+|||+|||+|..++.+|.. +..+|+++|+|+.+++.+++|++.+|+. +++++++|+.+..... ....+||
T Consensus       141 ~~~~~g~~VLDl~~g~G~~si~~a~~-ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD  219 (324)
T d2as0a2         141 KWVQPGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFD  219 (324)
T ss_dssp             GGCCTTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             hhcCCCCeeecccCcccchhhhhhhc-CCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCC
Confidence            34567899999999999999888855 4569999999999999999999999995 5999999987642110 1126899


Q ss_pred             EEEEcCc-------------ccHHHHHHHHccCcccCeEEEEEeCCC--cHHHHHH-HHHHHHHhCCe
Q 026122          149 VAVARAV-------------AEMRILAEYCLPLVRVGGLFVAAKGHD--PQEEVKN-SERAVQLMGAS  200 (243)
Q Consensus       149 ~I~~~~~-------------~~~~~~l~~~~~~LkpgG~l~~~~~~~--~~~~~~~-~~~~l~~~g~~  200 (243)
                      +|+++..             ..+.+++..+.++|+|||.|++..+..  ..+++.+ +.++..+.|-.
T Consensus       220 ~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~~~~~~f~~~v~~a~~~~gr~  287 (324)
T d2as0a2         220 IVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMFKDMIIAAGAKAGKF  287 (324)
T ss_dssp             EEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTEE
T ss_pred             chhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCccCCHHHHHHHHHHHHHHcCCe
Confidence            9999642             246788999999999999998877432  2333333 23444555533

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=3.1e-14  Score=117.40  Aligned_cols=130  Identities=15%  Similarity=0.187  Sum_probs=98.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccccccC---CcCCCCceEEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKD---VSFREQYDVAV  151 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~---~~~~~~fD~I~  151 (243)
                      ..++||+|||+|.+++.+|...|+++|+|+|+|+++++.|++|++.+++.+ +.+++.+..+....   ....++||+|+
T Consensus        62 ~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~iv  141 (250)
T d2h00a1          62 LRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFCM  141 (250)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEEE
T ss_pred             cceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEEE
Confidence            568999999999999999999999999999999999999999999999975 88888765543211   01135799999


Q ss_pred             EcC--c-------------------------------------ccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHH
Q 026122          152 ARA--V-------------------------------------AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSER  192 (243)
Q Consensus       152 ~~~--~-------------------------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~  192 (243)
                      ||.  .                                     .-+.+++++....++..|++..+.+..  +.+.++.+
T Consensus       142 sNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~~t~~ig~~--~~l~~i~~  219 (250)
T d2h00a1         142 CNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGKK--CSLAPLKE  219 (250)
T ss_dssp             ECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEESST--TSHHHHHH
T ss_pred             ecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhcCcEEEEEecch--hhHHHHHH
Confidence            972  0                                     015667778888899999988777743  22334456


Q ss_pred             HHHHhCCeeeEEEEE
Q 026122          193 AVQLMGASLLQLCSV  207 (243)
Q Consensus       193 ~l~~~g~~~~~~~~~  207 (243)
                      .+++.|+.-++..++
T Consensus       220 ~L~~~g~~~i~~ie~  234 (250)
T d2h00a1         220 ELRIQGVPKVTYTEF  234 (250)
T ss_dssp             HHHHTTCSEEEEEEE
T ss_pred             HHHHcCCCeEEEEEe
Confidence            667899865554443

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.59  E-value=4.9e-15  Score=124.76  Aligned_cols=102  Identities=23%  Similarity=0.303  Sum_probs=78.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC----CEEEEEccccccccCCcCCCCceEEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL----NVQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~----~v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      +.+|||+|||+|..++.+|..  +.+|+|||+|++|++.|+++....+..    ...+...++..+.......++||+|+
T Consensus        57 ~~~vLD~GcG~G~~~~~la~~--g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~v~  134 (292)
T d1xvaa_          57 CHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVI  134 (292)
T ss_dssp             CCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEEE
T ss_pred             CCEEEEecCCCcHHHHHHHHc--CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCceEEE
Confidence            679999999999999999875  579999999999999999998876653    24455556544322111236899999


Q ss_pred             EcC------------cccHHHHHHHHccCcccCeEEEEEe
Q 026122          152 ARA------------VAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       152 ~~~------------~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      +..            ..+...+++++.++|||||.|++..
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~  174 (292)
T d1xvaa_         135 CLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH  174 (292)
T ss_dssp             ECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEee
Confidence            742            1246789999999999999998854

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.58  E-value=4.6e-15  Score=119.71  Aligned_cols=104  Identities=19%  Similarity=0.329  Sum_probs=84.9

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEE
Q 026122           72 SCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        72 ~~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      .++++.+|||||||||+.+..+|+.. +.+|+++|.++++++.+++++++.++.|++++++|..+.....   .+||.|+
T Consensus        75 ~l~~g~~VLeIGsGsGY~taila~l~-g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~---~pfD~Ii  150 (215)
T d1jg1a_          75 NLKPGMNILEVGTGSGWNAALISEIV-KTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPK---APYDVII  150 (215)
T ss_dssp             TCCTTCCEEEECCTTSHHHHHHHHHH-CSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGG---CCEEEEE
T ss_pred             ccCccceEEEecCCCChhHHHHHHhh-CceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCccc---CcceeEE
Confidence            45679999999999999998889765 4689999999999999999999999999999999998755432   7899999


Q ss_pred             EcCcccHHHHHHHHccCcccCeEEEEEeCC
Q 026122          152 ARAVAEMRILAEYCLPLVRVGGLFVAAKGH  181 (243)
Q Consensus       152 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  181 (243)
                      +.+...  .+-+.+...|+|||++++..+.
T Consensus       151 v~~a~~--~ip~~l~~qL~~gGrLv~pv~~  178 (215)
T d1jg1a_         151 VTAGAP--KIPEPLIEQLKIGGKLIIPVGS  178 (215)
T ss_dssp             ECSBBS--SCCHHHHHTEEEEEEEEEEECS
T ss_pred             eecccc--cCCHHHHHhcCCCCEEEEEEcc
Confidence            976321  1112344579999999987653

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.57  E-value=8e-15  Score=125.59  Aligned_cols=96  Identities=18%  Similarity=0.231  Sum_probs=81.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      +++|||||||+|.+++.+|+. ++.+|+|+|.|+ +++.++++.+.++.. +++++++++.++....   ++||+|++..
T Consensus        39 ~~~VLDlGcGtG~ls~~aa~~-Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~---~~~D~i~se~  113 (328)
T d1g6q1_          39 DKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHLPF---PKVDIIISEW  113 (328)
T ss_dssp             TCEEEEETCTTSHHHHHHHHT-CCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSS---SCEEEEEECC
T ss_pred             cCEEEEeCCCCCHHHHHHHHh-CCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccCcc---cceeEEEEEe
Confidence            889999999999999877765 456999999996 678899999998875 5999999999987643   7899999953


Q ss_pred             -------cccHHHHHHHHccCcccCeEEE
Q 026122          155 -------VAEMRILAEYCLPLVRVGGLFV  176 (243)
Q Consensus       155 -------~~~~~~~l~~~~~~LkpgG~l~  176 (243)
                             ...+..++....++|||||+++
T Consensus       114 ~~~~~~~e~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         114 MGYFLLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             CBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             cceeeccchhHHHHHHHHHhccCCCeEEE
Confidence                   2357888999999999999986

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.57  E-value=8.6e-15  Score=124.77  Aligned_cols=96  Identities=22%  Similarity=0.291  Sum_probs=80.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      +++|||||||+|.+++.+|+. ++.+|+|||.|+. ...++++++.+++. +++++++++.++....   ++||+|++..
T Consensus        34 ~~~VLDiGcG~G~ls~~aa~~-Ga~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~---~~~D~ivs~~  108 (316)
T d1oria_          34 DKVVLDVGSGTGILCMFAAKA-GARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVEEVELPV---EKVDIIISEW  108 (316)
T ss_dssp             TCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTTTCCCSS---SCEEEEEECC
T ss_pred             cCEEEEEecCCcHHHHHHHHh-CCCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHHHccccc---ceeEEEeeee
Confidence            889999999999999888865 4568999999975 56778888888886 4999999999987643   7899999853


Q ss_pred             c-------ccHHHHHHHHccCcccCeEEE
Q 026122          155 V-------AEMRILAEYCLPLVRVGGLFV  176 (243)
Q Consensus       155 ~-------~~~~~~l~~~~~~LkpgG~l~  176 (243)
                      .       ..++.+++.+.++|||||.++
T Consensus       109 ~~~~l~~e~~~~~~l~~~~r~Lkp~G~ii  137 (316)
T d1oria_         109 MGYCLFYESMLNTVLHARDKWLAPDGLIF  137 (316)
T ss_dssp             CBBTBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             eeeeeccHHHHHHHHHHHHhcCCCCeEEE
Confidence            2       257899999999999999987

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.56  E-value=8.2e-15  Score=112.04  Aligned_cols=102  Identities=14%  Similarity=0.122  Sum_probs=82.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccccccCCcCCCCceEEEEcC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      +.+|||+|||||.+++.++.+ ...+|++||.++++++.++++++.+++.+ ++++++|+.++...  ..++||+|+++.
T Consensus        15 g~~vlDl~~GtG~~~iea~~r-ga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~--~~~~fDiIf~DP   91 (152)
T d2esra1          15 GGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDC--LTGRFDLVFLDP   91 (152)
T ss_dssp             SCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHH--BCSCEEEEEECC
T ss_pred             CCeEEEcCCccCHHHHHHHHh-Ccceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccc--cccccceeEech
Confidence            889999999999999876654 45699999999999999999999999865 99999999885432  137899999974


Q ss_pred             c---ccHHHHHHHH--ccCcccCeEEEEEeC
Q 026122          155 V---AEMRILAEYC--LPLVRVGGLFVAAKG  180 (243)
Q Consensus       155 ~---~~~~~~l~~~--~~~LkpgG~l~~~~~  180 (243)
                      .   ......++.+  .++|+|||.+++...
T Consensus        92 Py~~~~~~~~l~~i~~~~~L~~~g~iiiE~~  122 (152)
T d2esra1          92 PYAKETIVATIEALAAKNLLSEQVMVVCETD  122 (152)
T ss_dssp             SSHHHHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             hhccchHHHHHHHHHHCCCcCCCeEEEEEeC
Confidence            2   2345555654  367999999998764

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.56  E-value=8.6e-15  Score=118.78  Aligned_cols=101  Identities=22%  Similarity=0.269  Sum_probs=79.6

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEE
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      ++++.+|||||||+|..+..+|+.  ..+|+++|+++++++.|+++...  ..|++++++|.......   .++||.|++
T Consensus        68 l~~g~~VLdIG~GsGy~ta~La~l--~~~V~aiE~~~~~~~~A~~~~~~--~~nv~~~~~d~~~g~~~---~~pfD~Iiv  140 (224)
T d1vbfa_          68 LHKGQKVLEIGTGIGYYTALIAEI--VDKVVSVEINEKMYNYASKLLSY--YNNIKLILGDGTLGYEE---EKPYDRVVV  140 (224)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHTT--CSSEEEEESCGGGCCGG---GCCEEEEEE
T ss_pred             hcccceEEEecCCCCHHHHHHHHH--hcccccccccHHHHHHHHHHHhc--ccccccccCchhhcchh---hhhHHHHHh
Confidence            466999999999999999888877  47999999999999999987654  46899999998764433   268999999


Q ss_pred             cCcccHHHHHHHHccCcccCeEEEEEeCCC
Q 026122          153 RAVAEMRILAEYCLPLVRVGGLFVAAKGHD  182 (243)
Q Consensus       153 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  182 (243)
                      .+...  .+.+.+.+.|+|||++++..+..
T Consensus       141 ~~a~~--~ip~~l~~qLk~GGrLV~pvg~~  168 (224)
T d1vbfa_         141 WATAP--TLLCKPYEQLKEGGIMILPIGVG  168 (224)
T ss_dssp             SSBBS--SCCHHHHHTEEEEEEEEEEECSS
T ss_pred             hcchh--hhhHHHHHhcCCCCEEEEEEcCC
Confidence            75321  22344557899999999876643

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.7e-14  Score=122.62  Aligned_cols=96  Identities=20%  Similarity=0.251  Sum_probs=78.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      +++|||||||+|.+++.+|+. +..+|+|+|.|+.+.. +++..++++. .+++++++|+.++....   ++||+|++..
T Consensus        36 ~~~VLDiGcG~G~lsl~aa~~-Ga~~V~aid~s~~~~~-a~~~~~~~~~~~~i~~~~~~~~~l~~~~---~~~D~Ivse~  110 (311)
T d2fyta1          36 DKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSEILYQ-AMDIIRLNKLEDTITLIKGKIEEVHLPV---EKVDVIISEW  110 (311)
T ss_dssp             TCEEEEETCTTSHHHHHHHHT-TCSEEEEEESSTHHHH-HHHHHHHTTCTTTEEEEESCTTTSCCSC---SCEEEEEECC
T ss_pred             cCEEEEECCCCCHHHHHHHHc-CCCEEEEEeCHHHHHH-HHHHHHHhCCCccceEEEeeHHHhcCcc---ccceEEEEee
Confidence            789999999999999888875 4469999999998765 5556666665 46999999999987643   7899999953


Q ss_pred             c-------ccHHHHHHHHccCcccCeEEE
Q 026122          155 V-------AEMRILAEYCLPLVRVGGLFV  176 (243)
Q Consensus       155 ~-------~~~~~~l~~~~~~LkpgG~l~  176 (243)
                      .       ..++.++....++|||||+++
T Consensus       111 ~~~~~~~e~~~~~~~~a~~~~Lkp~G~ii  139 (311)
T d2fyta1         111 MGYFLLFESMLDSVLYAKNKYLAKGGSVY  139 (311)
T ss_dssp             CBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             eeeecccccccHHHHHHHHhcCCCCcEEe
Confidence            2       246788888889999999987

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1e-14  Score=124.98  Aligned_cols=107  Identities=17%  Similarity=0.105  Sum_probs=86.2

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc-------CC--CCEEEEEccccccccCCc
Q 026122           72 SCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT-------QL--LNVQIVRGRAETLGKDVS  142 (243)
Q Consensus        72 ~~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~~--~~v~~~~~d~~~~~~~~~  142 (243)
                      .++++.+|||||||+|.+++.+|+..+..+++|||+|+.+++.|+++.+..       |.  .+++++++|+.+.+....
T Consensus       148 ~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~~~~~~  227 (328)
T d1nw3a_         148 KMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRER  227 (328)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSHHHHHH
T ss_pred             CCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcccccccccc
Confidence            356789999999999999999998888789999999999999998876542       33  469999999988754321


Q ss_pred             CCCCceEEEEcCc---ccHHHHHHHHccCcccCeEEEEEe
Q 026122          143 FREQYDVAVARAV---AEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       143 ~~~~fD~I~~~~~---~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      . ..+|+|++++.   .++...++++.+.|||||++++..
T Consensus       228 ~-~~advi~~~~~~f~~~~~~~l~e~~r~LKpGg~iv~~~  266 (328)
T d1nw3a_         228 I-ANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSK  266 (328)
T ss_dssp             H-HHCSEEEECCTTTCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             c-CcceEEEEcceecchHHHHHHHHHHHhCCCCcEEEEec
Confidence            0 13588888763   467888999999999999988754

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=5e-14  Score=116.93  Aligned_cols=133  Identities=14%  Similarity=0.057  Sum_probs=89.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC------------------------------
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL------------------------------  125 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~------------------------------  125 (243)
                      +.+|||||||+|..++..+... ..+|+|+|+|+.|++.+++.+++.+..                              
T Consensus        55 g~~vLDiGcG~g~~~~~~~~~~-~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (263)
T d2g72a1          55 GRTLIDIGSGPTVYQLLSACSH-FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRAR  133 (263)
T ss_dssp             CSEEEEETCTTCCGGGTTGGGG-CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHH
T ss_pred             CcEEEEeccCCCHHHHHHhccc-CCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhhhh
Confidence            7899999999998865555443 358999999999999998876543210                              


Q ss_pred             CEEEEEccccccccC---CcCCCCceEEEEcCc--------ccHHHHHHHHccCcccCeEEEEEeC--CC----------
Q 026122          126 NVQIVRGRAETLGKD---VSFREQYDVAVARAV--------AEMRILAEYCLPLVRVGGLFVAAKG--HD----------  182 (243)
Q Consensus       126 ~v~~~~~d~~~~~~~---~~~~~~fD~I~~~~~--------~~~~~~l~~~~~~LkpgG~l~~~~~--~~----------  182 (243)
                      ...+..+|+..-...   ....++||+|++...        .++..+++++.++|||||.+++...  ..          
T Consensus       134 ~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~~~~~~  213 (263)
T d2g72a1         134 VKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLT  213 (263)
T ss_dssp             EEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEEE
T ss_pred             hhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccccCCcccc
Confidence            013445555432211   111257999998541        2578899999999999999886431  10          


Q ss_pred             -cHHHHHHHHHHHHHhCCeeeEEEEEec
Q 026122          183 -PQEEVKNSERAVQLMGASLLQLCSVES  209 (243)
Q Consensus       183 -~~~~~~~~~~~l~~~g~~~~~~~~~~~  209 (243)
                       ..-...++.+.++.+||++++.+....
T Consensus       214 ~~~~t~e~v~~~l~~aGf~v~~~~~~~~  241 (263)
T d2g72a1         214 VVPVSEEEVREALVRSGYKVRDLRTYIM  241 (263)
T ss_dssp             CCCCCHHHHHHHHHHTTEEEEEEEEEEC
T ss_pred             cCCCCHHHHHHHHHHCCCeEEEEEEeec
Confidence             001234567778899999887765443

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.52  E-value=2.8e-14  Score=115.71  Aligned_cols=105  Identities=15%  Similarity=0.154  Sum_probs=82.2

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHHHC------CCCEEEEEeCCHHHHHHHHHHHHHc-----CCCCEEEEEccccccccC
Q 026122           72 SCNSNLKLVDVGTGAGLPGLVLAIAC------PDWKVTLLESMNKRCVFLEHAVSLT-----QLLNVQIVRGRAETLGKD  140 (243)
Q Consensus        72 ~~~~~~~VLDiGcG~G~~~~~la~~~------~~~~v~~vD~s~~~~~~a~~~~~~~-----~~~~v~~~~~d~~~~~~~  140 (243)
                      .++++.+|||||||||+.+..+++..      ++.+|+++|+++++++.++++....     +..|+.++++|..+....
T Consensus        77 ~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~~  156 (223)
T d1r18a_          77 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPP  156 (223)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGG
T ss_pred             ccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEeccccccccc
Confidence            56779999999999999998888753      2458999999999999999887543     456899999999876544


Q ss_pred             CcCCCCceEEEEcCcccHHHHHHHHccCcccCeEEEEEeCC
Q 026122          141 VSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGH  181 (243)
Q Consensus       141 ~~~~~~fD~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  181 (243)
                      .   .+||.|++.+..+  .+-+.+.+.|||||++++..+.
T Consensus       157 ~---~~fD~Iiv~~a~~--~~p~~l~~~Lk~gG~lV~pvg~  192 (223)
T d1r18a_         157 N---APYNAIHVGAAAP--DTPTELINQLASGGRLIVPVGP  192 (223)
T ss_dssp             G---CSEEEEEECSCBS--SCCHHHHHTEEEEEEEEEEESC
T ss_pred             c---cceeeEEEEeech--hchHHHHHhcCCCcEEEEEEec
Confidence            2   6899999976332  1123456799999999987763

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.50  E-value=2.2e-13  Score=108.63  Aligned_cols=118  Identities=12%  Similarity=0.107  Sum_probs=80.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  155 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~  155 (243)
                      |.+|||+|||+|.+++.++. .+..+|+|||+|+.+++.+++|++.++. +.+++++|..++.      ++||+|+++..
T Consensus        47 g~~vLDlg~GtG~l~i~a~~-~g~~~v~~vdi~~~~~~~a~~N~~~~~~-~~~~~~~d~~~~~------~~fD~Vi~nPP  118 (201)
T d1wy7a1          47 GKVVADLGAGTGVLSYGALL-LGAKEVICVEVDKEAVDVLIENLGEFKG-KFKVFIGDVSEFN------SRVDIVIMNPP  118 (201)
T ss_dssp             TCEEEEETCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHTGGGTT-SEEEEESCGGGCC------CCCSEEEECCC
T ss_pred             CCEEEECcCcchHHHHHHHH-cCCCEEEEEcCcHHHHHHHHHHHHHcCC-CceEEECchhhhC------CcCcEEEEcCc
Confidence            78999999999999987764 4557999999999999999999998887 4889999987753      68999999842


Q ss_pred             c------cHHHHHHHHccCcccCeEEEEEeCCCcHHHHHH-HHHHHHHhCCeeeEEEE
Q 026122          156 A------EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKN-SERAVQLMGASLLQLCS  206 (243)
Q Consensus       156 ~------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~-~~~~l~~~g~~~~~~~~  206 (243)
                      -      .-..++...   +.+++.++......  ..... +.......|+.+.....
T Consensus       119 ~~~~~~~~d~~~l~~~---~~~~~~v~~ih~~~--~~~~~~i~~~~~~~g~~i~~~~~  171 (201)
T d1wy7a1         119 FGSQRKHADRPFLLKA---FEISDVVYSIHLAK--PEVRRFIEKFSWEHGFVVTHRLT  171 (201)
T ss_dssp             CSSSSTTTTHHHHHHH---HHHCSEEEEEEECC--HHHHHHHHHHHHHTTEEEEEEEE
T ss_pred             cccccccccHHHHHHH---Hhhcccchhcccch--HHHHHHHHHHHhhcCceEEEEEE
Confidence            1      112333332   33455555443222  12222 23344577876655433

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.2e-13  Score=115.31  Aligned_cols=104  Identities=13%  Similarity=0.192  Sum_probs=76.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHH----CCC--CEEEEEeCCHHHHHHHHHHHHHcC-CCC--EEEEEcccccccc---CCcC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIA----CPD--WKVTLLESMNKRCVFLEHAVSLTQ-LLN--VQIVRGRAETLGK---DVSF  143 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~----~~~--~~v~~vD~s~~~~~~a~~~~~~~~-~~~--v~~~~~d~~~~~~---~~~~  143 (243)
                      ..+|||||||+|..+..++..    +++  .+++|||+|+.|++.+++..+... +.+  +.+...+++++..   ....
T Consensus        41 ~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (280)
T d1jqea_          41 EIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKE  120 (280)
T ss_dssp             EEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSS
T ss_pred             CCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCC
Confidence            458999999999987766543    333  478999999999999999876643 344  4455666554310   0111


Q ss_pred             CCCceEEEEcC----cccHHHHHHHHccCcccCeEEEEEe
Q 026122          144 REQYDVAVARA----VAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       144 ~~~fD~I~~~~----~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      .++||+|++..    +.++..+++.+.++|+|||.+++..
T Consensus       121 ~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~  160 (280)
T d1jqea_         121 LQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIV  160 (280)
T ss_dssp             CCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEE
Confidence            37899999965    4578999999999999999988765

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.49  E-value=3.8e-14  Score=112.59  Aligned_cols=109  Identities=16%  Similarity=0.117  Sum_probs=76.6

Q ss_pred             HHHHHHHHHHHHhc-cCCccccCChHHHHHHhHhhhcccCCCcccccCccCCCCCCCCCeEEEEcCCCChHHHHHHHHCC
Q 026122           20 YLGLFLKKRKQNLQ-KMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLVLAIACP   98 (243)
Q Consensus        20 ~l~~~~~~~~~~n~-~~n~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~   98 (243)
                      .|+...+++..+.. +..+.++.+..++-..-+..... ...++             |++|||+|||+|.+++.++.. +
T Consensus         6 ~l~~~l~~~~~~~~~~~~leQy~T~~~~a~~~~~~~~~-~~dl~-------------Gk~VLDlGcGtG~l~i~a~~~-g   70 (197)
T d1ne2a_           6 DLEIRLQKLQQQGNFKNYLEQYPTDASTAAYFLIEIYN-DGNIG-------------GRSVIDAGTGNGILACGSYLL-G   70 (197)
T ss_dssp             HHHHHHHTSCCCC--------CCCCHHHHHHHHHHHHH-HTSSB-------------TSEEEEETCTTCHHHHHHHHT-T
T ss_pred             HHHHHHhcCCCCCCCCcccccCCCCHHHHHHHHHHHHH-cCCCC-------------CCEEEEeCCCCcHHHHHHHHc-C
Confidence            47777777766665 77788888877765444432222 12222             889999999999998777754 4


Q ss_pred             CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           99 DWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        99 ~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      ..+|+|||+++.+++.+++|+.     +++++++|+.+++      ++||+|++|.
T Consensus        71 a~~V~~vDid~~a~~~ar~N~~-----~~~~~~~D~~~l~------~~fD~Vi~NP  115 (197)
T d1ne2a_          71 AESVTAFDIDPDAIETAKRNCG-----GVNFMVADVSEIS------GKYDTWIMNP  115 (197)
T ss_dssp             BSEEEEEESCHHHHHHHHHHCT-----TSEEEECCGGGCC------CCEEEEEECC
T ss_pred             CCcccccccCHHHHHHHHHccc-----cccEEEEehhhcC------CcceEEEeCc
Confidence            5689999999999999988753     6889999998763      6899999984

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.46  E-value=2.8e-13  Score=115.29  Aligned_cols=110  Identities=13%  Similarity=0.092  Sum_probs=88.2

Q ss_pred             CCCCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC--CEEEEEccccccccC-CcCCCCc
Q 026122           71 SSCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL--NVQIVRGRAETLGKD-VSFREQY  147 (243)
Q Consensus        71 ~~~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~~~~-~~~~~~f  147 (243)
                      ..+.++.+|||++||+|..++.++. .+..+|++||+|+.+++.+++|++.+++.  +++++++|+.+.... .....+|
T Consensus       140 ~~~~~g~~VLdlf~~~G~~sl~aa~-~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~f  218 (317)
T d2b78a2         140 NGSAAGKTVLNLFSYTAAFSVAAAM-GGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTY  218 (317)
T ss_dssp             HTTTBTCEEEEETCTTTHHHHHHHH-TTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCE
T ss_pred             HHhhCCCceeecCCCCcHHHHHHHh-CCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCC
Confidence            3455689999999999999977664 34568999999999999999999999984  699999999765321 0112589


Q ss_pred             eEEEEcC-------------cccHHHHHHHHccCcccCeEEEEEeCC
Q 026122          148 DVAVARA-------------VAEMRILAEYCLPLVRVGGLFVAAKGH  181 (243)
Q Consensus       148 D~I~~~~-------------~~~~~~~l~~~~~~LkpgG~l~~~~~~  181 (243)
                      |+|++..             ..++.++++.+.++|+|||.+++..+.
T Consensus       219 D~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs  265 (317)
T d2b78a2         219 DIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNA  265 (317)
T ss_dssp             EEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             CEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            9999963             124778999999999999999987753

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.46  E-value=1.4e-13  Score=120.30  Aligned_cols=107  Identities=17%  Similarity=0.146  Sum_probs=79.9

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC-------C--CCEEE-EEccccccccCCc
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ-------L--LNVQI-VRGRAETLGKDVS  142 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-------~--~~v~~-~~~d~~~~~~~~~  142 (243)
                      ++++.+|||||||+|.+++.+|...+..+|+|||+|+.+++.|+++++..+       .  ..+.+ ..++..+......
T Consensus       214 Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~~~d~  293 (406)
T d1u2za_         214 LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAE  293 (406)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHH
T ss_pred             CCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhhcccccc
Confidence            577999999999999999999988887799999999999999999887642       1  12333 3344433211100


Q ss_pred             CCCCceEEEEcC---cccHHHHHHHHccCcccCeEEEEEe
Q 026122          143 FREQYDVAVARA---VAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       143 ~~~~fD~I~~~~---~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      .-..+|+|+++.   ..++...+.++.+.|||||+++...
T Consensus       294 ~~~~adVV~inn~~f~~~l~~~L~ei~r~LKPGGrIVs~~  333 (406)
T d1u2za_         294 LIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLK  333 (406)
T ss_dssp             HGGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             ccccceEEEEecccCchHHHHHHHHHHHhcCCCcEEEEec
Confidence            013588999876   3467889999999999999988753

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.44  E-value=3.6e-13  Score=105.86  Aligned_cols=102  Identities=13%  Similarity=0.039  Sum_probs=83.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~-  154 (243)
                      +.+|||++||||.+++.++. ++..+|++||.|+++++.+++|++.++..+++++++|+.++....  ..+||+|++.. 
T Consensus        44 ~~~vLDlfaGsG~~gieals-rGa~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~--~~~fDlIf~DPP  120 (183)
T d2fpoa1          44 DAQCLDCFAGSGALGLEALS-RYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQK--GTPHNIVFVDPP  120 (183)
T ss_dssp             TCEEEETTCTTCHHHHHHHH-TTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSC--CCCEEEEEECCS
T ss_pred             hhhhhhhhccccceeeeEEe-cCcceeEEEEEeechhhHHHHHHhhccccceeeeeeccccccccc--ccccCEEEEcCc
Confidence            78999999999999987664 456699999999999999999999999888999999988764332  36899999974 


Q ss_pred             --cccHHHHHHHHc--cCcccCeEEEEEeC
Q 026122          155 --VAEMRILAEYCL--PLVRVGGLFVAAKG  180 (243)
Q Consensus       155 --~~~~~~~l~~~~--~~LkpgG~l~~~~~  180 (243)
                        ....+.+++.+.  .+|+++|.++++..
T Consensus       121 Y~~~~~~~~l~~l~~~~~L~~~~iIiiE~~  150 (183)
T d2fpoa1         121 FRRGLLEETINLLEDNGWLADEALIYVESE  150 (183)
T ss_dssp             SSTTTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             cccchHHHHHHHHHHCCCCCCCeEEEEEec
Confidence              224566666664  47999999998764

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.43  E-value=1.4e-13  Score=107.05  Aligned_cols=104  Identities=24%  Similarity=0.286  Sum_probs=73.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcccccccc-CCcCCCCceEEEEc
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK-DVSFREQYDVAVAR  153 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~~~fD~I~~~  153 (243)
                      .+.+|||+|||+|.+++.++..  +++|+++|.|+.+++.+++|++.+++.+ ++...+...+.. ......+||+|+++
T Consensus        41 ~g~~vLDl~~G~G~~~i~a~~~--ga~vv~vD~~~~a~~~~~~N~~~~~~~~-~v~~~~~d~~~~~~~~~~~~fD~If~D  117 (171)
T d1ws6a1          41 RRGRFLDPFAGSGAVGLEAASE--GWEAVLVEKDPEAVRLLKENVRRTGLGA-RVVALPVEVFLPEAKAQGERFTVAFMA  117 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHT--TCEEEEECCCHHHHHHHHHHHHHHTCCC-EEECSCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCCeEEEeccccchhhhhhhhc--cchhhhcccCHHHHhhhhHHHHhhcccc-ceeeeehhcccccccccCCccceeEEc
Confidence            3889999999999999876654  5699999999999999999999999864 444444433210 00112689999997


Q ss_pred             Cc--ccHHHHHHHH--ccCcccCeEEEEEeCC
Q 026122          154 AV--AEMRILAEYC--LPLVRVGGLFVAAKGH  181 (243)
Q Consensus       154 ~~--~~~~~~l~~~--~~~LkpgG~l~~~~~~  181 (243)
                      ..  .+....+..+  ..+|+|||.+++.+..
T Consensus       118 PPY~~~~~~~l~~l~~~~ll~~~g~ivie~~~  149 (171)
T d1ws6a1         118 PPYAMDLAALFGELLASGLVEAGGLYVLQHPK  149 (171)
T ss_dssp             CCTTSCTTHHHHHHHHHTCEEEEEEEEEEEET
T ss_pred             cccccCHHHHHHHHHHcCCcCCCeEEEEEecC
Confidence            41  1222223322  3689999999887753

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.42  E-value=5.7e-13  Score=112.45  Aligned_cols=126  Identities=14%  Similarity=0.169  Sum_probs=91.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC--CEEEEEccccccccCC-cCCCCceEEE
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL--NVQIVRGRAETLGKDV-SFREQYDVAV  151 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~~~~~-~~~~~fD~I~  151 (243)
                      ++.+|||++||||..++.++..  +++|++||.|+.+++.|++|++.+++.  +++++++|+.++.... ....+||+|+
T Consensus       132 ~~~rVLdlf~~tG~~sl~aa~~--GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~Ii  209 (309)
T d2igta1         132 RPLKVLNLFGYTGVASLVAAAA--GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL  209 (309)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred             CCCeEEEecCCCcHHHHHHHhC--CCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEEE
Confidence            4789999999999999887753  569999999999999999999999985  4999999997753210 1126799999


Q ss_pred             EcC--------------cccHHHHHHHHccCcccCeEEEEEeCC---CcHHHHHHHH-HHHHHhCCeee
Q 026122          152 ARA--------------VAEMRILAEYCLPLVRVGGLFVAAKGH---DPQEEVKNSE-RAVQLMGASLL  202 (243)
Q Consensus       152 ~~~--------------~~~~~~~l~~~~~~LkpgG~l~~~~~~---~~~~~~~~~~-~~l~~~g~~~~  202 (243)
                      ++.              ...+..+++.+.++|+|||.+++....   -....+.++. +.+...|-.+.
T Consensus       210 lDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~s~~~s~~~~~~~~~~~~~~ag~~v~  278 (309)
T d2igta1         210 TDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRETMRGAGGVVA  278 (309)
T ss_dssp             ECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHHTTTSCSEEE
T ss_pred             ECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcce
Confidence            852              113567778889999999976655432   2334444433 34445665443

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.38  E-value=2.2e-12  Score=101.14  Aligned_cols=104  Identities=13%  Similarity=0.087  Sum_probs=82.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccC-CcCCCCceEEEEc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKD-VSFREQYDVAVAR  153 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~-~~~~~~fD~I~~~  153 (243)
                      +.+|||++||||.+++..+.+ +..+|++||.|+++++.+++|++.++.. +++++++|+.++... .....+||+|++.
T Consensus        42 ~~~vLDlfaGsG~~g~ea~sr-Ga~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIflD  120 (182)
T d2fhpa1          42 GGMALDLYSGSGGLAIEAVSR-GMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLD  120 (182)
T ss_dssp             SCEEEETTCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCEEEEcccccccccceeeec-chhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEEec
Confidence            889999999999999877654 5669999999999999999999999886 599999998764321 0112579999997


Q ss_pred             C---cccHHHHHHHHc--cCcccCeEEEEEeC
Q 026122          154 A---VAEMRILAEYCL--PLVRVGGLFVAAKG  180 (243)
Q Consensus       154 ~---~~~~~~~l~~~~--~~LkpgG~l~~~~~  180 (243)
                      .   .......++.+.  .+|+++|.+++.+.
T Consensus       121 PPY~~~~~~~~l~~i~~~~~L~~~giIi~E~~  152 (182)
T d2fhpa1         121 PPYAKQEIVSQLEKMLERQLLTNEAVIVCETD  152 (182)
T ss_dssp             CCGGGCCHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             hhhhhhHHHHHHHHHHHCCCCCCCEEEEEEcC
Confidence            4   334567777664  57999999888764

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=9.8e-13  Score=106.13  Aligned_cols=104  Identities=25%  Similarity=0.277  Sum_probs=87.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccccccC---CcCCCCceEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKD---VSFREQYDVA  150 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~---~~~~~~fD~I  150 (243)
                      .++|||||||+|.-++.+|...+ +++|+.+|.+++..+.|+++.++.|+.+ ++++.+|+.+....   ....++||+|
T Consensus        60 ~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD~i  139 (219)
T d2avda1          60 AKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVA  139 (219)
T ss_dssp             CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEE
T ss_pred             CCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCccEE
Confidence            78999999999999999998765 6899999999999999999999999865 99999998664311   0112689999


Q ss_pred             EEcC-cccHHHHHHHHccCcccCeEEEEEe
Q 026122          151 VARA-VAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       151 ~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      +..+ ...+...++.+.++|+|||.+++-.
T Consensus       140 fiD~dk~~y~~~~~~~~~lL~~GGvii~Dn  169 (219)
T d2avda1         140 VVDADKENCSAYYERCLQLLRPGGILAVLR  169 (219)
T ss_dssp             EECSCSTTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EEeCCHHHHHHHHHHHHHHhcCCcEEEEeC
Confidence            9986 4467888899999999999988743

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.36  E-value=5.7e-13  Score=108.06  Aligned_cols=103  Identities=17%  Similarity=0.202  Sum_probs=87.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccccccC----CcCCCCceE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKD----VSFREQYDV  149 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~----~~~~~~fD~  149 (243)
                      ..+||||||++|.-++.+|...| +++|+.+|.+++..+.|++++++.|+.+ ++++.+++.+.-..    ....++||+
T Consensus        60 ~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~fD~  139 (227)
T d1susa1          60 AKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDF  139 (227)
T ss_dssp             CCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCBSE
T ss_pred             CCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCceeE
Confidence            78999999999999999998876 6899999999999999999999999865 99999998765321    001258999


Q ss_pred             EEEcC-cccHHHHHHHHccCcccCeEEEEE
Q 026122          150 AVARA-VAEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       150 I~~~~-~~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                      |+..+ -..+...++.+.++|+|||.+++-
T Consensus       140 iFiDa~k~~y~~~~e~~~~ll~~gGiii~D  169 (227)
T d1susa1         140 IFVDADKDNYLNYHKRLIDLVKVGGVIGYD  169 (227)
T ss_dssp             EEECSCSTTHHHHHHHHHHHBCTTCCEEEE
T ss_pred             EEeccchhhhHHHHHHHHhhcCCCcEEEEc
Confidence            99986 446889999999999999998764

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.35  E-value=2.9e-12  Score=103.05  Aligned_cols=102  Identities=15%  Similarity=0.182  Sum_probs=81.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEEccccccccCC---cCCCCceEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDV---SFREQYDVA  150 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~---~~~~~fD~I  150 (243)
                      +.+|||||||+|..++.+|...+ +++|+++|.++++++.+++++++.|+.+ |+++.+|..+.....   ...++||+|
T Consensus        57 pk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D~i  136 (214)
T d2cl5a1          57 PSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMV  136 (214)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEEEE
T ss_pred             CCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhccccccccee
Confidence            67999999999999999998754 6899999999999999999999999864 999999988753210   012579999


Q ss_pred             EEcCccc-H--HHHHHHHccCcccCeEEEE
Q 026122          151 VARAVAE-M--RILAEYCLPLVRVGGLFVA  177 (243)
Q Consensus       151 ~~~~~~~-~--~~~l~~~~~~LkpgG~l~~  177 (243)
                      +..+..+ .  ...+.++.++|+|||.+++
T Consensus       137 fiD~~~~~~~~~~~l~~~~~lLkpGGvIv~  166 (214)
T d2cl5a1         137 FLDHWKDRYLPDTLLLEKCGLLRKGTVLLA  166 (214)
T ss_dssp             EECSCGGGHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             eecccccccccHHHHHHHhCccCCCcEEEE
Confidence            9976432 2  2345677899999998665

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.28  E-value=8.7e-12  Score=98.45  Aligned_cols=105  Identities=12%  Similarity=0.100  Sum_probs=86.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccC--CcCCCCceEEEE
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD--VSFREQYDVAVA  152 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~--~~~~~~fD~I~~  152 (243)
                      ++..+||++||+|..+..++...|+++|+|+|.+++|++.++++.+.++. ++.+++++..++...  ....+++|.|+.
T Consensus        23 ~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~-r~~~~~~~f~~~~~~~~~~~~~~vdgIl~  101 (192)
T d1m6ya2          23 DEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSD-RVSLFKVSYREADFLLKTLGIEKVDGILM  101 (192)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTT-TEEEEECCGGGHHHHHHHTTCSCEEEEEE
T ss_pred             CCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccc-cccchhHHHhhHHHHHHHcCCCCcceeee
Confidence            48899999999999999999888999999999999999999998887663 599999988765321  011268999987


Q ss_pred             c-------------CcccHHHHHHHHccCcccCeEEEEEeC
Q 026122          153 R-------------AVAEMRILAEYCLPLVRVGGLFVAAKG  180 (243)
Q Consensus       153 ~-------------~~~~~~~~l~~~~~~LkpgG~l~~~~~  180 (243)
                      .             .+......++.+.++|+|||+++++.-
T Consensus       102 DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f  142 (192)
T d1m6ya2         102 DLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISF  142 (192)
T ss_dssp             ECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEES
T ss_pred             ccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeecc
Confidence            4             234578899999999999999988763

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=99.25  E-value=3.1e-11  Score=94.56  Aligned_cols=105  Identities=13%  Similarity=0.099  Sum_probs=81.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC--EEEEEccccccccCCcCCCCceEEEEc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN--VQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~--v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      +.+|||+.||||.+|+..+ .+++.+|+.||.+.++++.+++|++.++..+  ..+++.|..++........+||+|++.
T Consensus        44 ~~~vLDlFaGsG~~glEal-SRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlD  122 (183)
T d2ifta1          44 QSECLDGFAGSGSLGFEAL-SRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD  122 (183)
T ss_dssp             TCEEEETTCTTCHHHHHHH-HTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred             cceEeecccCccceeeeee-eecceeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEec
Confidence            7899999999999998777 4566799999999999999999999998753  777888876643322122579999997


Q ss_pred             C---cccHHHHHHHHc--cCcccCeEEEEEeCC
Q 026122          154 A---VAEMRILAEYCL--PLVRVGGLFVAAKGH  181 (243)
Q Consensus       154 ~---~~~~~~~l~~~~--~~LkpgG~l~~~~~~  181 (243)
                      .   ......+++.+.  .+|+++|.++++...
T Consensus       123 PPY~~~~~~~~l~~l~~~~~L~~~~liiiE~~~  155 (183)
T d2ifta1         123 PPFHFNLAEQAISLLCENNWLKPNALIYVETEK  155 (183)
T ss_dssp             CCSSSCHHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred             hhHhhhhHHHHHHHHHHhCCcCCCcEEEEEecC
Confidence            4   223566666664  589999999998754

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=99.24  E-value=4.3e-10  Score=96.53  Aligned_cols=128  Identities=15%  Similarity=0.108  Sum_probs=93.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccC-CcCCCCceEEEEc
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD-VSFREQYDVAVAR  153 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~~~fD~I~~~  153 (243)
                      ++.+|||+.||+|.+++.+|..  ..+|+|||.++.+++.|++|++.+++.|++++.++.++.... .....++|+|+.+
T Consensus       212 ~~~~vlDLycG~G~fsl~La~~--~~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~~~~~d~vilD  289 (358)
T d1uwva2         212 PEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLD  289 (358)
T ss_dssp             TTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEEC
T ss_pred             CCceEEEecccccccchhcccc--ccEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhhhhccCceEEeC
Confidence            4789999999999999999864  479999999999999999999999999999999998875322 1123579999996


Q ss_pred             Ccc-cHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEEEEe
Q 026122          154 AVA-EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVE  208 (243)
Q Consensus       154 ~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~  208 (243)
                      -.. ...+.++.+.+ ++|.-.+++..+  ...-.+++ ..|.+.||.+.++..++
T Consensus       290 PPR~G~~~~~~~l~~-~~~~~ivYVSCn--p~TlaRDl-~~l~~~gy~l~~i~~~D  341 (358)
T d1uwva2         290 PARAGAAGVMQQIIK-LEPIRIVYVSCN--PATLARDS-EALLKAGYTIARLAMLD  341 (358)
T ss_dssp             CCTTCCHHHHHHHHH-HCCSEEEEEESC--HHHHHHHH-HHHHHTTCEEEEEEEEC
T ss_pred             CCCccHHHHHHHHHH-cCCCEEEEEeCC--HHHHHHHH-HHHHHCCCeEeEEEEEe
Confidence            311 12334555444 256555555433  33333443 33557799999999888

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.17  E-value=6.7e-10  Score=92.24  Aligned_cols=144  Identities=13%  Similarity=0.120  Sum_probs=104.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc----------CCCCEEEEEccccccccCCcCCC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT----------QLLNVQIVRGRAETLGKDVSFRE  145 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~----------~~~~v~~~~~d~~~~~~~~~~~~  145 (243)
                      ..+||.||+|.|..+..+.+ ++..+|++||++++.++.+++.....          ..++++++.+|+..+...   .+
T Consensus        73 p~~vLiiG~G~G~~~~~~l~-~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~---~~  148 (276)
T d1mjfa_          73 PKRVLVIGGGDGGTVREVLQ-HDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN---NR  148 (276)
T ss_dssp             CCEEEEEECTTSHHHHHHTT-SCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH---CC
T ss_pred             CceEEEecCCchHHHHHHHH-hCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhc---cC
Confidence            68999999999988766654 56679999999999999998754221          234699999999876543   26


Q ss_pred             CceEEEEcCcc--------cHHHHHHHHccCcccCeEEEEEeC--CCcHHHHHHHHHHHHHhCCeeeEEEEEecCCCCCc
Q 026122          146 QYDVAVARAVA--------EMRILAEYCLPLVRVGGLFVAAKG--HDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQ  215 (243)
Q Consensus       146 ~fD~I~~~~~~--------~~~~~l~~~~~~LkpgG~l~~~~~--~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~  215 (243)
                      +||+|++....        .-.++++.+++.|+|||.+++-.+  ....+.+..+.+.+++. |..+....+..|.-++.
T Consensus       149 ~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~~~~tl~~~-F~~v~~y~~~vP~y~~~  227 (276)
T d1mjfa_         149 GFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKV-FDRVYYYSFPVIGYASP  227 (276)
T ss_dssp             CEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHH-CSEEEEEEECCTTSSSS
T ss_pred             CCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEecCCcchhHHHHHHHHHHHHhh-CCeeEEEEecCcCCCCc
Confidence            89999985421        126899999999999999887653  23455666667777766 66666655555665555


Q ss_pred             eEEEEEEee
Q 026122          216 RTAVVCLKS  224 (243)
Q Consensus       216 r~~v~~~k~  224 (243)
                      -..+++.+.
T Consensus       228 w~f~~as~~  236 (276)
T d1mjfa_         228 WAFLVGVKG  236 (276)
T ss_dssp             EEEEEEEES
T ss_pred             eEEEEEeCC
Confidence            555666554

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.12  E-value=1.4e-09  Score=90.88  Aligned_cols=146  Identities=13%  Similarity=0.043  Sum_probs=107.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc----CCCCEEEEEccccccccCCcCCCCceEEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT----QLLNVQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~----~~~~v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      ..+||-||.|.|..+..+.+..+..+|++||+++..++.+++.....    .-++++++.+|+.++-...  .++||+|+
T Consensus        90 pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~--~~~yDvIi  167 (295)
T d1inla_          90 PKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKF--KNEFDVII  167 (295)
T ss_dssp             CCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGC--SSCEEEEE
T ss_pred             CceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcC--CCCCCEEE
Confidence            68999999999998877776556679999999999999999876442    2346999999998875532  36899999


Q ss_pred             EcCcc---------cHHHHHHHHccCcccCeEEEEEeCC--CcHHHHHHHHHHHHHhCCeeeEEEEEecCCCCC-ceEEE
Q 026122          152 ARAVA---------EMRILAEYCLPLVRVGGLFVAAKGH--DPQEEVKNSERAVQLMGASLLQLCSVESQSPFG-QRTAV  219 (243)
Q Consensus       152 ~~~~~---------~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~-~r~~v  219 (243)
                      +....         --.++++.+++.|+|||.+++-.+.  ...+.+..+.+.++.. |..........|.-++ .-..+
T Consensus       168 ~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~sp~~~~~~~~~i~~tl~~v-F~~v~~y~~~vPtyp~G~w~f~  246 (295)
T d1inla_         168 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKV-FPITRVYLGFMTTYPSGMWSYT  246 (295)
T ss_dssp             EEC----------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHH-CSEEEEEEEECTTSTTSEEEEE
T ss_pred             EcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCChhhhhHHHHHHHHHHHhh-cceeEEEEeeeceecCcccEEE
Confidence            86421         1278999999999999998876643  3455566666777666 6566665555666544 44555


Q ss_pred             EEEee
Q 026122          220 VCLKS  224 (243)
Q Consensus       220 ~~~k~  224 (243)
                      ++.|.
T Consensus       247 ~aSk~  251 (295)
T d1inla_         247 FASKG  251 (295)
T ss_dssp             EEESS
T ss_pred             EEeCC
Confidence            66554

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.11  E-value=1.9e-09  Score=87.89  Aligned_cols=119  Identities=21%  Similarity=0.185  Sum_probs=87.9

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC-CCCEEEEEccccccccCCcCCCCceEEEE
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ-LLNVQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      +...+|||||||+|..++.+++++|+.+++..|.-+ .+       +..+ ..+++++.+|+.+-.      ...|++++
T Consensus        80 ~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi-------~~~~~~~ri~~~~gd~~~~~------p~~D~~~l  145 (244)
T d1fp1d2          80 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQ-VI-------ENAPPLSGIEHVGGDMFASV------PQGDAMIL  145 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHH-HH-------TTCCCCTTEEEEECCTTTCC------CCEEEEEE
T ss_pred             cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecchh-hh-------hccCCCCCeEEecCCccccc------ccceEEEE
Confidence            336799999999999999999999999999999843 22       2222 356999999986521      24699988


Q ss_pred             cCc------ccHHHHHHHHccCcccCeEEEEEeC-----CC-cHH--------------------HHHHHHHHHHHhCCe
Q 026122          153 RAV------AEMRILAEYCLPLVRVGGLFVAAKG-----HD-PQE--------------------EVKNSERAVQLMGAS  200 (243)
Q Consensus       153 ~~~------~~~~~~l~~~~~~LkpgG~l~~~~~-----~~-~~~--------------------~~~~~~~~l~~~g~~  200 (243)
                      ..+      .+...+++.+++.|+|||++++...     .. ...                    ...++.+.++++||+
T Consensus       146 ~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g~ert~~e~~~ll~~AGF~  225 (244)
T d1fp1d2         146 KAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFS  225 (244)
T ss_dssp             ESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCS
T ss_pred             ehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCCCcCCCHHHHHHHHHHcCCC
Confidence            642      2357889999999999999887652     11 111                    124677888999999


Q ss_pred             eeEEEE
Q 026122          201 LLQLCS  206 (243)
Q Consensus       201 ~~~~~~  206 (243)
                      .+++..
T Consensus       226 ~v~v~~  231 (244)
T d1fp1d2         226 KFQVAC  231 (244)
T ss_dssp             EEEEEE
T ss_pred             ceEEEe
Confidence            887643

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=99.09  E-value=4.9e-10  Score=94.58  Aligned_cols=146  Identities=12%  Similarity=0.050  Sum_probs=100.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc-----CCCCEEEEEccccccccCCcCCCCceEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT-----QLLNVQIVRGRAETLGKDVSFREQYDVA  150 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~-----~~~~v~~~~~d~~~~~~~~~~~~~fD~I  150 (243)
                      .++||.||.|.|..+..+.+..+..+|++||++++.++.+++.....     .-++++++.+|+.++....  +++||+|
T Consensus        78 pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~--~~~yDvI  155 (312)
T d1uira_          78 PKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERT--EERYDVV  155 (312)
T ss_dssp             CCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHC--CCCEEEE
T ss_pred             cceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhc--CCcccEE
Confidence            67999999999998877776656789999999999999999886432     1246999999998865422  3689999


Q ss_pred             EEcCc---c------c--HHHHHHHHccCcccCeEEEEEeCC--CcHHHH-HHHHHHHHHhCCeeeEEEEEecCCCCCce
Q 026122          151 VARAV---A------E--MRILAEYCLPLVRVGGLFVAAKGH--DPQEEV-KNSERAVQLMGASLLQLCSVESQSPFGQR  216 (243)
Q Consensus       151 ~~~~~---~------~--~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~-~~~~~~l~~~g~~~~~~~~~~~~~~~~~r  216 (243)
                      ++...   .      .  -.++++.+++.|+|||.+++..+.  ....++ ..+.+.++.. |..+.......|.-...-
T Consensus       156 i~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s~~~~~~~~~~~i~~tl~~~-F~~V~~y~~~vPs~~~~w  234 (312)
T d1uira_         156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREA-FRYVRSYKNHIPGFFLNF  234 (312)
T ss_dssp             EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTT-CSEEEEEEEEEGGGTEEE
T ss_pred             EEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecCCcccchHHHHHHHHHHHHHh-CceEEEEEeeeCCcCCCC
Confidence            97531   1      1  268999999999999998876532  122233 3333444443 656665555555544343


Q ss_pred             EEEEEEee
Q 026122          217 TAVVCLKS  224 (243)
Q Consensus       217 ~~v~~~k~  224 (243)
                      ..+++.|.
T Consensus       235 ~f~~aS~~  242 (312)
T d1uira_         235 GFLLASDA  242 (312)
T ss_dssp             EEEEEESS
T ss_pred             EeEEEeCC
Confidence            44555543

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=99.06  E-value=2.2e-09  Score=88.96  Aligned_cols=146  Identities=16%  Similarity=0.088  Sum_probs=104.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc----CCCCEEEEEccccccccCCcCCCCceEEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT----QLLNVQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~----~~~~v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      ..+||-||-|.|..+..+.+..+..+|+.||++++.++.+++.....    .-++++++.+|...+....  .++||+|+
T Consensus        76 p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~--~~~yDvIi  153 (274)
T d1iy9a_          76 PEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKS--ENQYDVIM  153 (274)
T ss_dssp             CCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTC--CSCEEEEE
T ss_pred             cceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhc--CCCCCEEE
Confidence            68999999999999877775555679999999999999999876432    2246999999988865432  36899999


Q ss_pred             EcCcc--------cHHHHHHHHccCcccCeEEEEEeCC--CcHHHHHHHHHHHHHhCCeeeEEEEEecCCCCCc-eEEEE
Q 026122          152 ARAVA--------EMRILAEYCLPLVRVGGLFVAAKGH--DPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQ-RTAVV  220 (243)
Q Consensus       152 ~~~~~--------~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~-r~~v~  220 (243)
                      +....        --.++++.+++.|+|||.++.-.+.  ...+.+..+.+.++.. |..+.......|.-++. -..++
T Consensus       154 ~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~i~~tl~~~-F~~v~~y~~~vPsy~~g~w~f~~  232 (274)
T d1iy9a_         154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEI-FPITKLYTANIPTYPSGLWTFTI  232 (274)
T ss_dssp             ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTT-CSEEEEEEECCTTSGGGCEEEEE
T ss_pred             EcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecCCccccHHHHHHHHHhhhhh-cCceEEEEEEeeecCCCceEEEE
Confidence            96421        1478999999999999998876532  2345556666766665 44555555555655444 34444


Q ss_pred             EEee
Q 026122          221 CLKS  224 (243)
Q Consensus       221 ~~k~  224 (243)
                      +.|.
T Consensus       233 aS~~  236 (274)
T d1iy9a_         233 GSKK  236 (274)
T ss_dssp             EESS
T ss_pred             EcCC
Confidence            4443

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.05  E-value=1.1e-09  Score=92.94  Aligned_cols=145  Identities=9%  Similarity=0.071  Sum_probs=94.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHHH-----CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceE
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIA-----CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDV  149 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~-----~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~  149 (243)
                      ++.+|+|.|||+|.+.+.+...     ....+++|+|+++.++..|+.++...+.. ..+.++|......    ..+||+
T Consensus       117 ~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~-~~~~~~d~~~~~~----~~~fD~  191 (328)
T d2f8la1         117 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQK-MTLLHQDGLANLL----VDPVDV  191 (328)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCC-CEEEESCTTSCCC----CCCEEE
T ss_pred             CCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhh-hhhhccccccccc----cccccc
Confidence            3678999999999987666543     23458999999999999999998877764 5677777655432    268999


Q ss_pred             EEEcCc----------------------ccHHHHHHHHccCcccCeEEEEEeCCC--cHHHHHHHHHHHHHhCCeeeEEE
Q 026122          150 AVARAV----------------------AEMRILAEYCLPLVRVGGLFVAAKGHD--PQEEVKNSERAVQLMGASLLQLC  205 (243)
Q Consensus       150 I~~~~~----------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~--~~~~~~~~~~~l~~~g~~~~~~~  205 (243)
                      |++|..                      .....+++.+.+.|+|||+++++.+..  .......+++.+-+.+ .+..+.
T Consensus       192 vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~~l~~~~~~~lR~~L~~~~-~i~~ii  270 (328)
T d2f8la1         192 VISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKNG-HIEGII  270 (328)
T ss_dssp             EEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHHHE-EEEEEE
T ss_pred             cccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCccccCchhHHHHHHHHhCC-cEEEEE
Confidence            999731                      013457899999999999988776421  1222333455444543 344443


Q ss_pred             EEe---cCCCCCceEEEEEEeeC
Q 026122          206 SVE---SQSPFGQRTAVVCLKSR  225 (243)
Q Consensus       206 ~~~---~~~~~~~r~~v~~~k~~  225 (243)
                      .+.   +........+++++|..
T Consensus       271 ~lp~~~F~~~~~~t~ilvl~K~~  293 (328)
T d2f8la1         271 KLPETLFKSEQARKSILILEKAD  293 (328)
T ss_dssp             ECCGGGSCC-CCCEEEEEEEECC
T ss_pred             ECCccccCCCCCCeEEEEEECCC
Confidence            322   12222245566666653

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=4.7e-09  Score=87.30  Aligned_cols=146  Identities=10%  Similarity=0.036  Sum_probs=106.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc----CCCCEEEEEccccccccCCcCCCCceEEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT----QLLNVQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~----~~~~v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      .++||-||.|.|..+..+.+..+..+|+.||++++.++.+++....+    .-++++++.+|+..+....  .++||+|+
T Consensus        79 pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~--~~~yDvIi  156 (285)
T d2o07a1          79 PRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQN--QDAFDVII  156 (285)
T ss_dssp             CCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTC--SSCEEEEE
T ss_pred             cCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcC--CCCCCEEE
Confidence            68999999999999877776556689999999999999999876432    2346999999988865432  36899999


Q ss_pred             EcCcc--------cHHHHHHHHccCcccCeEEEEEeCC--CcHHHHHHHHHHHHHhCCeeeEEEEEecCCCCCce-EEEE
Q 026122          152 ARAVA--------EMRILAEYCLPLVRVGGLFVAAKGH--DPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQR-TAVV  220 (243)
Q Consensus       152 ~~~~~--------~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r-~~v~  220 (243)
                      +....        --.++++.+++.|+|||.+++-.+.  ...+.+..+.+.++.. |..+.......|.-++.. ..++
T Consensus       157 ~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~~~~tl~~~-F~~v~~y~~~vP~~~~g~w~f~~  235 (285)
T d2o07a1         157 TDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSL-FPVVAYAYCTIPTYPSGQIGFML  235 (285)
T ss_dssp             EECC-----------CHHHHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHHH-CSEEEEEEEECTTSGGGEEEEEE
T ss_pred             EcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEeccchhhhHHHHHHHHHHHHhc-CCeeeEEeeeeeecCCCCeEEEE
Confidence            96422        1357899999999999998876532  3455566666666665 666666666667665544 4555


Q ss_pred             EEee
Q 026122          221 CLKS  224 (243)
Q Consensus       221 ~~k~  224 (243)
                      +.|.
T Consensus       236 aSk~  239 (285)
T d2o07a1         236 CSKN  239 (285)
T ss_dssp             EESS
T ss_pred             EECC
Confidence            5553

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.03  E-value=2.1e-09  Score=90.68  Aligned_cols=127  Identities=19%  Similarity=0.147  Sum_probs=98.0

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEE
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      ..++.+|||++||+|.=+..++... ..+.++++|.++..+..++++.++++..|+.+...|...+...   ...||.|+
T Consensus       114 ~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~---~~~fD~IL  190 (313)
T d1ixka_         114 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGEL---NVEFDKIL  190 (313)
T ss_dssp             CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGG---CCCEEEEE
T ss_pred             CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccccc---cccccEEE
Confidence            4578999999999999888888665 3579999999999999999999999999998888888776543   36899999


Q ss_pred             EcCc--------------------------ccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHH-HHHHHHHhCCeee
Q 026122          152 ARAV--------------------------AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKN-SERAVQLMGASLL  202 (243)
Q Consensus       152 ~~~~--------------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~-~~~~l~~~g~~~~  202 (243)
                      ..+.                          .-..+++..+.+.|||||+++.....-..+|-++ +...++..++.++
T Consensus       191 vDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~eENE~VV~~~L~~~~~~~~  268 (313)
T d1ixka_         191 LDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNFDVELL  268 (313)
T ss_dssp             EECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSEEEE
T ss_pred             EccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCChHhHHHHHHHHHhcCCCEEe
Confidence            8420                          0246788899999999999888886544444333 2344556665544

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.03  E-value=1.6e-09  Score=90.25  Aligned_cols=127  Identities=14%  Similarity=0.051  Sum_probs=94.8

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEE
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      ..++.+|||+++|+|.-+..++....+.+|+++|+++..+..++++++++|++++.+...+.......  ....||.|+.
T Consensus       100 ~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~--~~~~fd~IL~  177 (284)
T d1sqga2         100 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWC--GEQQFDRILL  177 (284)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHH--TTCCEEEEEE
T ss_pred             ccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhc--ccccccEEEE
Confidence            35688999999999999989988777789999999999999999999999998776666554432221  1267999998


Q ss_pred             cCc--------------------------ccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHH-HHHHHh-CCee
Q 026122          153 RAV--------------------------AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSE-RAVQLM-GASL  201 (243)
Q Consensus       153 ~~~--------------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~-~~l~~~-g~~~  201 (243)
                      .+.                          .-...+++.+.+.|||||+++...+.-..+|-++.. ..+++. ++++
T Consensus       178 DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~ENE~vv~~~l~~~~~~~~  254 (284)
T d1sqga2         178 DAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTADAEL  254 (284)
T ss_dssp             ECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHHHHHCTTCEE
T ss_pred             eccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCchhhCHHHHHHHHHhCCCcEE
Confidence            420                          014778999999999999999888665544433333 345554 4544

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=6.2e-09  Score=87.00  Aligned_cols=123  Identities=11%  Similarity=-0.027  Sum_probs=90.8

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEE
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIA-CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      .++.+|||++||+|.-+..+|.. .+..+|+++|+++..++.++++++++|+.++.+...|...+.......++||.|+.
T Consensus        93 ~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~fD~VL~  172 (293)
T d2b9ea1          93 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILL  172 (293)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEEE
T ss_pred             CccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcccccccceeeEEee
Confidence            45889999999999988888754 45689999999999999999999999999999999998876543222357999998


Q ss_pred             cCc-------------------c---------cHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHH-HHHHHh
Q 026122          153 RAV-------------------A---------EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSE-RAVQLM  197 (243)
Q Consensus       153 ~~~-------------------~---------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~-~~l~~~  197 (243)
                      .+.                   .         ....+++.+. .++|||.++.....-..+|-++.. ..+++.
T Consensus       173 DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl~~~ENe~vV~~~L~~~  245 (293)
T d2b9ea1         173 DPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSLCQEENEDVVRDALQQN  245 (293)
T ss_dssp             CCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCCCGGGTHHHHHHHHTTS
T ss_pred             cCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccCChhHhHHHHHHHHHhC
Confidence            520                   0         0234555666 479999988877655444444333 334444

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.97  E-value=5.3e-09  Score=87.79  Aligned_cols=146  Identities=10%  Similarity=0.017  Sum_probs=102.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc----CCCCEEEEEccccccccCCcCCCCceEEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT----QLLNVQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~----~~~~v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      ..+||-||.|.|..+..+.+..+..+|+.||++++.++.+++....+    .-++++++.+|..++....  .++||+|+
T Consensus       107 pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~--~~~yDvII  184 (312)
T d2b2ca1         107 PKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNH--KNEFDVII  184 (312)
T ss_dssp             CCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHC--TTCEEEEE
T ss_pred             CCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhC--CCCCCEEE
Confidence            67999999999999877776555579999999999999999876442    2246999999998865432  36899999


Q ss_pred             EcCcc--------cHHHHHHHHccCcccCeEEEEEeCC--CcHHHHHHHHHHHHHhCCeeeEEEEEecCCCCCc-eEEEE
Q 026122          152 ARAVA--------EMRILAEYCLPLVRVGGLFVAAKGH--DPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQ-RTAVV  220 (243)
Q Consensus       152 ~~~~~--------~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~-r~~v~  220 (243)
                      +....        --.++++.+++.|+|||.++.-.+.  ...+.+..+.+.++.. |..+.......|.-++. -..++
T Consensus       185 ~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~v-F~~v~~y~~~vPtyp~G~w~f~~  263 (312)
T d2b2ca1         185 TDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKI-FPAVTYAQSIVSTYPSGSMGYLI  263 (312)
T ss_dssp             ECCC-------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHH-CSEEEEEEEECTTSGGGEEEEEE
T ss_pred             EcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCChHHhHHHHHHHHHHhhhc-cceEEEeeeccCCcCCccceeeE
Confidence            96421        2378899999999999998886532  2344555666666554 55566555555655443 34556


Q ss_pred             EEee
Q 026122          221 CLKS  224 (243)
Q Consensus       221 ~~k~  224 (243)
                      +.|.
T Consensus       264 aSk~  267 (312)
T d2b2ca1         264 CAKN  267 (312)
T ss_dssp             EESS
T ss_pred             EECC
Confidence            5554

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.96  E-value=5.6e-09  Score=85.01  Aligned_cols=117  Identities=15%  Similarity=0.152  Sum_probs=86.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      ..+|+|||||+|..++.+++++|+.+++..|..+ .+       +..+. .+++++.+|+.+-.      ..+|+++++.
T Consensus        81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi-------~~~~~~~rv~~~~gD~f~~~------p~aD~~~l~~  146 (244)
T d1fp2a2          81 LESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQ-VV-------ENLSGSNNLTYVGGDMFTSI------PNADAVLLKY  146 (244)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHH-HH-------TTCCCBTTEEEEECCTTTCC------CCCSEEEEES
T ss_pred             ceEEEEecCCccHHHHHHHHhCCCCeEEEecCHH-HH-------HhCcccCceEEEecCcccCC------CCCcEEEEEe
Confidence            4689999999999999999999999999999843 22       22333 46999999987631      3589999865


Q ss_pred             cc------cHHHHHHHHccCcccC---eEEEEEeC----CCcH---------------------HHHHHHHHHHHHhCCe
Q 026122          155 VA------EMRILAEYCLPLVRVG---GLFVAAKG----HDPQ---------------------EEVKNSERAVQLMGAS  200 (243)
Q Consensus       155 ~~------~~~~~l~~~~~~Lkpg---G~l~~~~~----~~~~---------------------~~~~~~~~~l~~~g~~  200 (243)
                      +.      +...+++.+++.|+||   |++++...    ....                     ....++.+.++++||+
T Consensus       147 vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~G~ert~~e~~~ll~~AGf~  226 (244)
T d1fp2a2         147 ILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQ  226 (244)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTCC
T ss_pred             ecccCChHHHHHHHHHHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHcCCc
Confidence            22      3467899999999998   77776542    1110                     0134677888899999


Q ss_pred             eeEEEE
Q 026122          201 LLQLCS  206 (243)
Q Consensus       201 ~~~~~~  206 (243)
                      ..++..
T Consensus       227 ~~~i~~  232 (244)
T d1fp2a2         227 HYKISP  232 (244)
T ss_dssp             EEEEEE
T ss_pred             eEEEEE
Confidence            888764

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.93  E-value=2.1e-08  Score=83.45  Aligned_cols=148  Identities=11%  Similarity=0.048  Sum_probs=103.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc----CCCCEEEEEccccccccCCcCCCCceEEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT----QLLNVQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~----~~~~v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      ..+||=||-|.|..+..+.+..+..+|++||++++.++.+++.....    .-++++++.+|..+..... ..++||+|+
T Consensus        81 pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~-~~~~yDvIi  159 (290)
T d1xj5a_          81 PKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNA-AEGSYDAVI  159 (290)
T ss_dssp             CCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTS-CTTCEEEEE
T ss_pred             CcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhc-cccCccEEE
Confidence            67999999999999877776555579999999999999999875432    2346999999988765321 125899999


Q ss_pred             EcCcc--------cHHHHHHHHccCcccCeEEEEEeCC--CcHHHHHHHHHHHHHhCCeeeEEEEEecCCCCCce-EEEE
Q 026122          152 ARAVA--------EMRILAEYCLPLVRVGGLFVAAKGH--DPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQR-TAVV  220 (243)
Q Consensus       152 ~~~~~--------~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r-~~v~  220 (243)
                      +....        --.++++.+++.|+|||.++.-.+.  ...+.+..+.+.+++.............|.-.++- ..++
T Consensus       160 ~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~vF~~~~~y~~~~vPty~~g~w~f~~  239 (290)
T d1xj5a_         160 VDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESLWLHMDIIEDIVSNCREIFKGSVNYAWTSVPTYPSGVIGFML  239 (290)
T ss_dssp             ECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSSCEEEEEEECTTSGGGEEEEEE
T ss_pred             EcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCCcHHHHHHHHHHHhhhhhhcccceeEeeEeeeeecCCceEEEE
Confidence            86422        1378999999999999998887643  23556666777777775444333223345443333 3445


Q ss_pred             EEee
Q 026122          221 CLKS  224 (243)
Q Consensus       221 ~~k~  224 (243)
                      +.+.
T Consensus       240 as~~  243 (290)
T d1xj5a_         240 CSTE  243 (290)
T ss_dssp             EECS
T ss_pred             EeCC
Confidence            5554

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.92  E-value=3.2e-09  Score=86.40  Aligned_cols=117  Identities=16%  Similarity=0.086  Sum_probs=85.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC-CCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ-LLNVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      ..+|+|||||+|..++.+++.+|+.+++..|..+. ++       ... ..+++++.+|+.+-.      ...|+++...
T Consensus        82 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i~-------~~~~~~r~~~~~~d~~~~~------P~ad~~~l~~  147 (243)
T d1kyza2          82 LKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-IE-------DAPSYPGVEHVGGDMFVSI------PKADAVFMKW  147 (243)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-TT-------TCCCCTTEEEEECCTTTCC------CCCSCEECSS
T ss_pred             CcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-hh-------hcccCCceEEecccccccC------CCcceEEEEE
Confidence            46899999999999999999999999999999652 21       112 246999999987632      1245555543


Q ss_pred             ------cccHHHHHHHHccCcccCeEEEEEeC------CCc-HH--------------------HHHHHHHHHHHhCCee
Q 026122          155 ------VAEMRILAEYCLPLVRVGGLFVAAKG------HDP-QE--------------------EVKNSERAVQLMGASL  201 (243)
Q Consensus       155 ------~~~~~~~l~~~~~~LkpgG~l~~~~~------~~~-~~--------------------~~~~~~~~l~~~g~~~  201 (243)
                            ..+...+++++++.|+|||++++...      ... ..                    ...++.+.++++||+.
T Consensus       148 vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~ert~~e~~~ll~~AGf~~  227 (243)
T d1kyza2         148 ICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQG  227 (243)
T ss_dssp             SSTTSCHHHHHHHHHHHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCSSCCCEEHHHHHHHHHHHCCSC
T ss_pred             EeecCCHHHHHHHHHHHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHcCCCc
Confidence                  22467899999999999999887642      111 00                    1346777889999998


Q ss_pred             eEEEE
Q 026122          202 LQLCS  206 (243)
Q Consensus       202 ~~~~~  206 (243)
                      +++..
T Consensus       228 vkv~~  232 (243)
T d1kyza2         228 FKVHC  232 (243)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            87754

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.89  E-value=3.3e-09  Score=91.50  Aligned_cols=102  Identities=14%  Similarity=0.138  Sum_probs=86.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC---------------EEEEEccccccccC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN---------------VQIVRGRAETLGKD  140 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~---------------v~~~~~d~~~~~~~  140 (243)
                      +.+|||..||||.-++..|...+..+|+++|+|+.+++.+++|++.++..+               +.+.+.|+..+...
T Consensus        46 ~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~~  125 (375)
T d2dula1          46 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAE  125 (375)
T ss_dssp             CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHH
T ss_pred             CCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhHh
Confidence            779999999999999988887777799999999999999999999987643               55666776554332


Q ss_pred             CcCCCCceEEEEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122          141 VSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       141 ~~~~~~fD~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                        ....||+|..........+++.+.+.++.||.+.+..
T Consensus       126 --~~~~fDvIDiDPfGs~~pfldsAi~a~~~~Gll~vTa  162 (375)
T d2dula1         126 --RHRYFHFIDLDPFGSPMEFLDTALRSAKRRGILGVTA  162 (375)
T ss_dssp             --STTCEEEEEECCSSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             --hcCcCCcccCCCCCCcHHHHHHHHHHhccCCEEEEEe
Confidence              1257999999988888999999999999999999875

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.87  E-value=7.7e-09  Score=82.11  Aligned_cols=138  Identities=11%  Similarity=-0.009  Sum_probs=85.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      ++.+|||.|||+|.+...+....+ ..+++|+|+++.++..+         ....++++|.......    .+||+|+++
T Consensus        19 ~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~---------~~~~~~~~~~~~~~~~----~~fd~ii~n   85 (223)
T d2ih2a1          19 RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------PWAEGILADFLLWEPG----EAFDLILGN   85 (223)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------TTEEEEESCGGGCCCS----SCEEEEEEC
T ss_pred             CcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc---------ccceeeeeehhccccc----cccceeccc
Confidence            378999999999998766665543 57899999998643321         2367888887765432    689999996


Q ss_pred             Cc--------------------------------c-cHHHHHHHHccCcccCeEEEEEeCCCc--HHHHHHHHHHHHHhC
Q 026122          154 AV--------------------------------A-EMRILAEYCLPLVRVGGLFVAAKGHDP--QEEVKNSERAVQLMG  198 (243)
Q Consensus       154 ~~--------------------------------~-~~~~~l~~~~~~LkpgG~l~~~~~~~~--~~~~~~~~~~l~~~g  198 (243)
                      ..                                . -...+++.+.+.|++||++.++.+...  ......+++.+.+.+
T Consensus        86 pP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~~l~~~~~~~lR~~l~~~~  165 (223)
T d2ih2a1          86 PPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALLREFLAREG  165 (223)
T ss_dssp             CCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGGGHHHHHHHHHHS
T ss_pred             CccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeeeeccCcchHHHHHHHHhcC
Confidence            20                                0 135677889999999999888763221  222234444444444


Q ss_pred             CeeeEEEEEecCCCCCceEEEEEEeeC
Q 026122          199 ASLLQLCSVESQSPFGQRTAVVCLKSR  225 (243)
Q Consensus       199 ~~~~~~~~~~~~~~~~~r~~v~~~k~~  225 (243)
                      .-......-.++.....-.+++++|..
T Consensus       166 ~i~i~~~~~~F~~~~v~t~i~~~~k~~  192 (223)
T d2ih2a1         166 KTSVYYLGEVFPQKKVSAVVIRFQKSG  192 (223)
T ss_dssp             EEEEEEEESCSTTCCCCEEEEEEESSS
T ss_pred             CEEEEcchhcCCCCCCcEEEEEEEeCC
Confidence            211111111123333456666666654

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.86  E-value=1.4e-08  Score=79.60  Aligned_cols=100  Identities=16%  Similarity=0.157  Sum_probs=66.6

Q ss_pred             CCeEEEEcCCCChHHHHHHH----HC----CCCEEEEEeCCHHHHHHHHHHH--------------HHc----CC-----
Q 026122           76 NLKLVDVGTGAGLPGLVLAI----AC----PDWKVTLLESMNKRCVFLEHAV--------------SLT----QL-----  124 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~----~~----~~~~v~~vD~s~~~~~~a~~~~--------------~~~----~~-----  124 (243)
                      ..+|+++|||||--...+|.    ..    ...+|+|+|+|+.+++.|++..              ++.    +.     
T Consensus        25 ~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~~  104 (193)
T d1af7a2          25 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL  104 (193)
T ss_dssp             CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSE
T ss_pred             CeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccce
Confidence            45999999999985444432    21    2358999999999999887421              110    10     


Q ss_pred             --------CCEEEEEccccccccCCcCCCCceEEEEcCcc------cHHHHHHHHccCcccCeEEEE
Q 026122          125 --------LNVQIVRGRAETLGKDVSFREQYDVAVARAVA------EMRILAEYCLPLVRVGGLFVA  177 (243)
Q Consensus       125 --------~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~------~~~~~l~~~~~~LkpgG~l~~  177 (243)
                              ..+.+...+..+....  ..++||+|+|+++.      ...++++.+.+.|+|||.|++
T Consensus       105 ~~~~~~~~~~v~~~~~~~~~~~~~--~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~l  169 (193)
T d1af7a2         105 VRVRQELANYVEFSSVNLLEKQYN--VPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFA  169 (193)
T ss_dssp             EEECHHHHTTEEEEECCTTCSSCC--CCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             eehHHHHHHHHHHhhhhccccccC--CCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEE
Confidence                    0133444444332211  12689999998743      357899999999999999887

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.76  E-value=2.1e-08  Score=81.05  Aligned_cols=74  Identities=20%  Similarity=0.146  Sum_probs=58.8

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      +++++|||||||+|.++..++..  +.+|++||+++.+++.+++...  +.+|++++++|+.++....   .....|++|
T Consensus        20 ~~~d~VlEIGpG~G~LT~~Ll~~--~~~v~avE~D~~l~~~l~~~~~--~~~n~~i~~~D~l~~~~~~---~~~~~vv~N   92 (235)
T d1qama_          20 NEHDNIFEIGSGKGHFTLELVQR--CNFVTAIEIDHKLCKTTENKLV--DHDNFQVLNKDILQFKFPK---NQSYKIFGN   92 (235)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHTT--TCCSEEEECCCGGGCCCCS---SCCCEEEEE
T ss_pred             CCCCeEEEECCCchHHHHHHHhC--cCceEEEeeccchHHHHHHHhh--cccchhhhhhhhhhccccc---cccceeeee
Confidence            44899999999999999999976  4699999999999988877543  3457999999999886532   334467776


Q ss_pred             C
Q 026122          154 A  154 (243)
Q Consensus       154 ~  154 (243)
                      -
T Consensus        93 L   93 (235)
T d1qama_          93 I   93 (235)
T ss_dssp             C
T ss_pred             e
Confidence            4

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=98.58  E-value=3.6e-07  Score=70.61  Aligned_cols=96  Identities=14%  Similarity=0.185  Sum_probs=69.1

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccC-----CcCCCC
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIA-CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD-----VSFREQ  146 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-----~~~~~~  146 (243)
                      ++++.+|||+||++|..+..++.. .+...|+++|+.+-           ..++++.++++|+.+....     .....+
T Consensus        20 ~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~-----------~~i~~~~~~~~d~~~~~~~~~~~~~~~~~~   88 (180)
T d1ej0a_          20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM-----------DPIVGVDFLQGDFRDELVMKALLERVGDSK   88 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC-----------CCCTTEEEEESCTTSHHHHHHHHHHHTTCC
T ss_pred             cCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc-----------cccCCceEeecccccchhhhhhhhhccCcc
Confidence            355889999999999998877764 34589999998762           2356799999998763211     011257


Q ss_pred             ceEEEEcCcc---------------cHHHHHHHHccCcccCeEEEEEe
Q 026122          147 YDVAVARAVA---------------EMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       147 fD~I~~~~~~---------------~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      +|+|+|....               -....+..+.+.|++||.+++=.
T Consensus        89 ~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~  136 (180)
T d1ej0a_          89 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKV  136 (180)
T ss_dssp             EEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEE
Confidence            9999996421               13556667788999999988643

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.53  E-value=3.5e-09  Score=86.25  Aligned_cols=74  Identities=16%  Similarity=0.081  Sum_probs=58.2

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      .++++|||||||+|.++..++..  +.+|++||+++++++.+++...  ...|++++++|+.++....   ..++.|++|
T Consensus        28 ~~~d~VLEIGpG~G~LT~~L~~~--~~~v~aIE~D~~l~~~l~~~~~--~~~n~~ii~~D~l~~~~~~---~~~~~vv~N  100 (245)
T d1yuba_          28 KETDTVYEIGTGKGHLTTKLAKI--SKQVTSIELDSHLFNLSSEKLK--LNTRVTLIHQDILQFQFPN---KQRYKIVGN  100 (245)
T ss_dssp             CSSEEEEECSCCCSSCSHHHHHH--SSEEEESSSSCSSSSSSSCTTT--TCSEEEECCSCCTTTTCCC---SSEEEEEEE
T ss_pred             CCCCeEEEECCCccHHHHHHHhh--cCceeEeeecccchhhhhhhhh--hccchhhhhhhhhcccccc---ceeeeEeee
Confidence            34789999999999999999876  4699999999988777655432  2357999999999886542   456777876


Q ss_pred             C
Q 026122          154 A  154 (243)
Q Consensus       154 ~  154 (243)
                      -
T Consensus       101 L  101 (245)
T d1yuba_         101 I  101 (245)
T ss_dssp             C
T ss_pred             e
Confidence            4

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.51  E-value=1.3e-06  Score=76.14  Aligned_cols=146  Identities=10%  Similarity=-0.008  Sum_probs=94.4

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCC-------------CCEEEEEeCCHHHHHHHHHHHHHcCCC--CEEEEEcccccccc
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACP-------------DWKVTLLESMNKRCVFLEHAVSLTQLL--NVQIVRGRAETLGK  139 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~-------------~~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~~~  139 (243)
                      ++.+|+|-+||+|.+.+.+.....             ...+.|+|+++.+...|+-+..-++..  +..+..+|..+...
T Consensus       162 ~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~~i~~~d~l~~~~  241 (425)
T d2okca1         162 MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKEP  241 (425)
T ss_dssp             TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSCC
T ss_pred             ccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccceeecCchhhhhc
Confidence            378999999999998766654321             135999999999999999998877764  36677777765433


Q ss_pred             CCcCCCCceEEEEcCc---------------------ccHHHHHHHHccCcccCeEEEEEeCCC---cHHHHHHHHHHHH
Q 026122          140 DVSFREQYDVAVARAV---------------------AEMRILAEYCLPLVRVGGLFVAAKGHD---PQEEVKNSERAVQ  195 (243)
Q Consensus       140 ~~~~~~~fD~I~~~~~---------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~---~~~~~~~~~~~l~  195 (243)
                          ..+||+|++|..                     .....+++.+...|++||++.++.+..   ....-..+++.+-
T Consensus       242 ----~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~~~L~~~~~~~~iR~~Ll  317 (425)
T d2okca1         242 ----STLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDNVLFEAGAGETIRKRLL  317 (425)
T ss_dssp             ----SSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCSTHHHHHHHHHH
T ss_pred             ----ccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEechHHhhhhhhHHHHHHHHH
Confidence                268999999730                     013568899999999999988776421   1112233444444


Q ss_pred             HhCCeeeEEEEEe---cCCCCCceEEEEEEeeC
Q 026122          196 LMGASLLQLCSVE---SQSPFGQRTAVVCLKSR  225 (243)
Q Consensus       196 ~~g~~~~~~~~~~---~~~~~~~r~~v~~~k~~  225 (243)
                      +.+ .+..+..+.   +....-.-.+++++|..
T Consensus       318 ~~~-~i~aIi~LP~~~F~~t~v~t~Ilil~K~k  349 (425)
T d2okca1         318 QDF-NLHTILRLPTGIFYAQGVKANVLFFSKGQ  349 (425)
T ss_dssp             HHE-EEEEEEECCSSSSSSTTCCEEEEEEEESS
T ss_pred             Hhc-chhHhhcCCcccccCCCCCeEEEEEECCC
Confidence            433 233332222   11222355666777754

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.49  E-value=8.4e-07  Score=68.59  Aligned_cols=121  Identities=17%  Similarity=0.139  Sum_probs=86.8

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC--cCCCCceEEE
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV--SFREQYDVAV  151 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~--~~~~~fD~I~  151 (243)
                      +++..++|..+|.|..+..+...  +++|+|+|.++++++.+++.    ..+++.+++++..++....  ...+++|.|+
T Consensus        17 ~~g~~~vD~T~G~GGhs~~iL~~--~~~viaiD~D~~ai~~a~~~----~~~~~~~~~~~f~~~~~~l~~~~~~~vdgIl   90 (182)
T d1wg8a2          17 RPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGL----HLPGLTVVQGNFRHLKRHLAALGVERVDGIL   90 (182)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHT----CCTTEEEEESCGGGHHHHHHHTTCSCEEEEE
T ss_pred             CCCCEEEEeCCCCcHHHHHHhcc--cCcEEEEhhhhhHHHHHhhc----cccceeEeehHHHHHHHHHHHcCCCccCEEE
Confidence            34889999999999988777654  57999999999988877652    3356999999887754211  0125799999


Q ss_pred             EcC-------------cccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeee
Q 026122          152 ARA-------------VAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLL  202 (243)
Q Consensus       152 ~~~-------------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~  202 (243)
                      +.-             .......++.....|++||.+++..-.  ..+-+.+.+.++..+++..
T Consensus        91 ~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fh--s~Ed~ivk~~~~e~~~k~i  152 (182)
T d1wg8a2          91 ADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFH--SLEDRVVKRFLRESGLKVL  152 (182)
T ss_dssp             EECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECS--HHHHHHHHHHHHHHCSEES
T ss_pred             EEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecc--cchhHHHHHHHhhccceec
Confidence            842             224566788889999999998876642  2233445566667776544

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=4.6e-07  Score=74.65  Aligned_cols=73  Identities=22%  Similarity=0.182  Sum_probs=61.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCEEEEEccccccccCCcCCCCceEEEEc
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      ++++|||||+|+|.++..++..  +.+|++||+++.+++.+++....... .+++++++|+.....     ..++.|++|
T Consensus        21 ~~d~VlEIGPG~G~LT~~Ll~~--~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~-----~~~~~vV~N   93 (278)
T d1zq9a1          21 PTDVVLEVGPGTGNMTVKLLEK--AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDL-----PFFDTCVAN   93 (278)
T ss_dssp             TTCEEEEECCTTSTTHHHHHHH--SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCC-----CCCSEEEEE
T ss_pred             CCCEEEEECCCchHHHHHHHhc--CCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhh-----hhhhhhhcc
Confidence            3789999999999999999977  46999999999999999888766554 469999999988754     346788887


Q ss_pred             C
Q 026122          154 A  154 (243)
Q Consensus       154 ~  154 (243)
                      -
T Consensus        94 L   94 (278)
T d1zq9a1          94 L   94 (278)
T ss_dssp             C
T ss_pred             h
Confidence            4

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=98.27  E-value=7e-07  Score=71.66  Aligned_cols=100  Identities=13%  Similarity=0.096  Sum_probs=65.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHH----CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcC-CCCceEE
Q 026122           76 NLKLVDVGTGAGLPGLVLAIA----CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSF-REQYDVA  150 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~----~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~-~~~fD~I  150 (243)
                      +.+|||||++.|.-++.++..    .+.++|+++|+++.....     .....++++++++|..+....... ...+|+|
T Consensus        81 Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~-----~~~~~~~I~~i~gDs~~~~~~~~l~~~~~dlI  155 (232)
T d2bm8a1          81 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQI-----PASDMENITLHQGDCSDLTTFEHLREMAHPLI  155 (232)
T ss_dssp             CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCC-----CGGGCTTEEEEECCSSCSGGGGGGSSSCSSEE
T ss_pred             CCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhh-----hhccccceeeeecccccHHHHHHHHhcCCCEE
Confidence            679999999999877766643    257899999998743221     122345799999987654322111 2468988


Q ss_pred             EEcCcccHHHHHH--HHccCcccCeEEEEEeC
Q 026122          151 VARAVAEMRILAE--YCLPLVRVGGLFVAAKG  180 (243)
Q Consensus       151 ~~~~~~~~~~~l~--~~~~~LkpgG~l~~~~~  180 (243)
                      +..+.......+.  ...+.|++||++++...
T Consensus       156 fID~~H~~~~v~~~~~~~~lLk~GG~iIveD~  187 (232)
T d2bm8a1         156 FIDNAHANTFNIMKWAVDHLLEEGDYFIIEDM  187 (232)
T ss_dssp             EEESSCSSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred             EEcCCcchHHHHHHHHHhcccCcCCEEEEEcC
Confidence            8865332211111  24579999999888553

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=98.17  E-value=1.1e-06  Score=71.32  Aligned_cols=61  Identities=15%  Similarity=0.046  Sum_probs=49.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcccccccc
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK  139 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~  139 (243)
                      +++.|||||||+|.++..++..  +.+|++||+++.+++.+++...  ...+++++++|+.++..
T Consensus        21 ~~d~vlEIGpG~G~LT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~~--~~~~~~ii~~D~l~~~~   81 (252)
T d1qyra_          21 KGQAMVEIGPGLAALTEPVGER--LDQLTVIELDRDLAARLQTHPF--LGPKLTIYQQDAMTFNF   81 (252)
T ss_dssp             TTCCEEEECCTTTTTHHHHHTT--CSCEEEECCCHHHHHHHHTCTT--TGGGEEEECSCGGGCCH
T ss_pred             CCCEEEEECCCchHHHHHHHcc--CCceEEEEeccchhHHHHHHhh--hccchhHHhhhhhhhcc
Confidence            3789999999999999888865  5789999999998888766322  22469999999988654

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=98.08  E-value=2.7e-06  Score=68.23  Aligned_cols=125  Identities=14%  Similarity=0.017  Sum_probs=72.5

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcc-ccccccCCcCCCCceEEE
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGR-AETLGKDVSFREQYDVAV  151 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d-~~~~~~~~~~~~~fD~I~  151 (243)
                      ++++.+|+|+|||+|..+..++...+...|.|+|+--..-+ .-...+.++.+-+++...+ +..++     +...|+|+
T Consensus        64 ~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e-~P~~~~~~~~ni~~~~~~~dv~~l~-----~~~~D~vl  137 (257)
T d2p41a1          64 VTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHE-EPIPMSTYGWNLVRLQSGVDVFFIP-----PERCDTLL  137 (257)
T ss_dssp             SCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSC-CCCCCCSTTGGGEEEECSCCTTTSC-----CCCCSEEE
T ss_pred             ccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCcccc-CCccccccccccccchhhhhHHhcC-----CCcCCEEE
Confidence            45578999999999999988886655568888887321000 0000011121224444333 32222     26799999


Q ss_pred             EcCcc----------cHHHHHHHHccCcccCeEEEEEe-CCCcHHHHHHHHHHHHHhCCeeeE
Q 026122          152 ARAVA----------EMRILAEYCLPLVRVGGLFVAAK-GHDPQEEVKNSERAVQLMGASLLQ  203 (243)
Q Consensus       152 ~~~~~----------~~~~~l~~~~~~LkpgG~l~~~~-~~~~~~~~~~~~~~l~~~g~~~~~  203 (243)
                      |....          .-..+++.+.++|+|||.|++-. .+...+.++.+...-..+|-..++
T Consensus       138 cDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~py~~~v~e~le~lq~~fgg~lVR  200 (257)
T d2p41a1         138 CDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYMSSVIEKMEALQRKHGGALVR  200 (257)
T ss_dssp             ECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCSHHHHHHHHHHHHHHCCEEEC
T ss_pred             eeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEEEECCCCChHHHHHHHHHHHHhCCeeEc
Confidence            96311          12467788889999999977643 333344443333333466665554

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=97.95  E-value=3.1e-05  Score=68.94  Aligned_cols=149  Identities=8%  Similarity=-0.053  Sum_probs=88.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHCC------------------CCEEEEEeCCHHHHHHHHHHHHHcCCCC-----EEEEE
Q 026122           75 SNLKLVDVGTGAGLPGLVLAIACP------------------DWKVTLLESMNKRCVFLEHAVSLTQLLN-----VQIVR  131 (243)
Q Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~------------------~~~v~~vD~s~~~~~~a~~~~~~~~~~~-----v~~~~  131 (243)
                      ++.+|+|-+||+|.+.+.......                  ...++|+|+++.+...++-+.--++...     -.+..
T Consensus       164 ~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~~~i~~~~~~~~  243 (524)
T d2ar0a1         164 PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRL  243 (524)
T ss_dssp             TTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEE
T ss_pred             cchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhcccccccccchhhh
Confidence            477999999999998765544210                  1258999999999999998887666431     12333


Q ss_pred             ccccccccCCcCCCCceEEEEcCc------------------ccHHHHHHHHccCcccCeEEEEEeCCC---cHHHHHHH
Q 026122          132 GRAETLGKDVSFREQYDVAVARAV------------------AEMRILAEYCLPLVRVGGLFVAAKGHD---PQEEVKNS  190 (243)
Q Consensus       132 ~d~~~~~~~~~~~~~fD~I~~~~~------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~---~~~~~~~~  190 (243)
                      ++.......  ...+||+|++|..                  ..-..+++.+.+.|++||++.++.+..   ....-..+
T Consensus       244 ~~~l~~d~~--~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP~~~Lf~~~~~~~i  321 (524)
T d2ar0a1         244 GNTLGSDGE--NLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDI  321 (524)
T ss_dssp             SCTTSHHHH--TSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCCTHHHHH
T ss_pred             hhhhhhccc--ccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEEehHHhhhhhhhHHH
Confidence            333321111  1257999999730                  013458999999999999988876421   11111234


Q ss_pred             HHHHHHhCCeeeEEEEEe---cCCCCCceEEEEEEeeCC
Q 026122          191 ERAVQLMGASLLQLCSVE---SQSPFGQRTAVVCLKSRR  226 (243)
Q Consensus       191 ~~~l~~~g~~~~~~~~~~---~~~~~~~r~~v~~~k~~~  226 (243)
                      ++.|-+.+ .+..+-.+.   +....-.-.+++++|...
T Consensus       322 R~~Ll~~~-~i~aII~LP~~~F~~t~i~t~Il~l~K~k~  359 (524)
T d2ar0a1         322 RRDLMDKC-HLHTILRLPTGIFYAQGVKTNVLFFTKGTV  359 (524)
T ss_dssp             HHHHHHHE-EEEEEEECCSSCSSSCSCCEEEEEEEEBCS
T ss_pred             HHHHHHcC-CceEEEECCCCcCCCCCCCeEEEEEECCCC
Confidence            44443333 233332222   112223566667777543

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.77  E-value=5.7e-06  Score=62.65  Aligned_cols=96  Identities=17%  Similarity=0.172  Sum_probs=61.7

Q ss_pred             CCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEc-cccccccCCcCCCCceEEE
Q 026122           74 NSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRG-RAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        74 ~~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~fD~I~  151 (243)
                      +++.+|+-+|+| .|..++.+++.. +++|+++|.+++.++.++    ++|.+  .++.. +-.+...  ...+.+|+|+
T Consensus        26 ~~g~~vlI~GaG~vG~~a~q~ak~~-G~~vi~~~~~~~k~~~a~----~lGa~--~~i~~~~~~~~~~--~~~~~~d~vi   96 (168)
T d1piwa2          26 GPGKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAM----KMGAD--HYIATLEEGDWGE--KYFDTFDLIV   96 (168)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHH----HHTCS--EEEEGGGTSCHHH--HSCSCEEEEE
T ss_pred             CCCCEEEEECCCCcchhHHHHhhhc-cccccccccchhHHHHhh----ccCCc--EEeeccchHHHHH--hhhcccceEE
Confidence            458999999998 566677777665 689999999998777665    45654  22221 2122211  1236799988


Q ss_pred             EcCcccHHHHHHHHccCcccCeEEEEE
Q 026122          152 ARAVAEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       152 ~~~~~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                      ..........++.+.+.++|+|++++.
T Consensus        97 ~~~~~~~~~~~~~~~~~l~~~G~iv~~  123 (168)
T d1piwa2          97 VCASSLTDIDFNIMPKAMKVGGRIVSI  123 (168)
T ss_dssp             ECCSCSTTCCTTTGGGGEEEEEEEEEC
T ss_pred             EEecCCccchHHHHHHHhhccceEEEe
Confidence            642221111245678899999998764

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.73  E-value=6.9e-06  Score=63.89  Aligned_cols=100  Identities=14%  Similarity=0.036  Sum_probs=66.0

Q ss_pred             CCCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccc---cCCcCCCCce
Q 026122           73 CNSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLG---KDVSFREQYD  148 (243)
Q Consensus        73 ~~~~~~VLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---~~~~~~~~fD  148 (243)
                      ++++.+||-+|||. |..+..+|+.....+|+++|.+++.++.+++    +|..  .++...-.++.   ........+|
T Consensus        23 v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~----~Ga~--~~~~~~~~~~~~~i~~~t~g~g~D   96 (195)
T d1kola2          23 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA----QGFE--IADLSLDTPLHEQIAALLGEPEVD   96 (195)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTCE--EEETTSSSCHHHHHHHHHSSSCEE
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhh----cccc--EEEeCCCcCHHHHHHHHhCCCCcE
Confidence            45699999999997 6677778877777799999999988777654    4432  22221111110   0000124689


Q ss_pred             EEEEcCc-------------ccHHHHHHHHccCcccCeEEEEE
Q 026122          149 VAVARAV-------------AEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       149 ~I~~~~~-------------~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                      +++-..-             ......++.+.+.++|||++++.
T Consensus        97 ~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~  139 (195)
T d1kola2          97 CAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP  139 (195)
T ss_dssp             EEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred             EEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEe
Confidence            9985321             11356788999999999998765

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=97.71  E-value=3.2e-05  Score=62.19  Aligned_cols=74  Identities=20%  Similarity=0.245  Sum_probs=59.8

Q ss_pred             CeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC---------CCCEEEEEccccccccCCcCCCCc
Q 026122           77 LKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ---------LLNVQIVRGRAETLGKDVSFREQY  147 (243)
Q Consensus        77 ~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---------~~~v~~~~~d~~~~~~~~~~~~~f  147 (243)
                      .+|||.-||.|.-++.+|..  +++|+++|.++.....++.+.++..         ..+++++++|..++....  .++|
T Consensus        90 ~~VlD~TaGlG~Da~vlA~~--G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~--~~~~  165 (250)
T d2oyra1          90 PDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI--TPRP  165 (250)
T ss_dssp             CCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTC--SSCC
T ss_pred             CEEEECCCcccHHHHHHHhC--CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhcc--CCCC
Confidence            48999999999999999976  5899999999999888887776542         126899999988765432  3679


Q ss_pred             eEEEEcC
Q 026122          148 DVAVARA  154 (243)
Q Consensus       148 D~I~~~~  154 (243)
                      |+|+...
T Consensus       166 DvIYlDP  172 (250)
T d2oyra1         166 QVVYLDP  172 (250)
T ss_dssp             SEEEECC
T ss_pred             CEEEECC
Confidence            9999953

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.66  E-value=1.2e-05  Score=61.27  Aligned_cols=99  Identities=14%  Similarity=0.119  Sum_probs=63.4

Q ss_pred             CCCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccc---cCCcCCCCce
Q 026122           73 CNSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLG---KDVSFREQYD  148 (243)
Q Consensus        73 ~~~~~~VLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---~~~~~~~~fD  148 (243)
                      ++++.+|+=+|||. |..++.+++.....+|+++|.+++..+.++    ++|..  .++.-+-++..   ........+|
T Consensus        25 ~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~----~lGa~--~~i~~~~~~~~~~v~~~t~g~G~D   98 (174)
T d1jqba2          25 IEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAK----FYGAT--DILNYKNGHIEDQVMKLTNGKGVD   98 (174)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHH----HHTCS--EEECGGGSCHHHHHHHHTTTSCEE
T ss_pred             CCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHH----hhCcc--ccccccchhHHHHHHHHhhccCcc
Confidence            35588999999986 778888888765558999999998777665    45543  23322211111   0000014599


Q ss_pred             EEEEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122          149 VAVARAVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       149 ~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      +|+-..-.  ...++.+.+.++|+|++++.-
T Consensus        99 ~vid~~g~--~~~~~~a~~~~~~~G~iv~~G  127 (174)
T d1jqba2          99 RVIMAGGG--SETLSQAVKMVKPGGIISNIN  127 (174)
T ss_dssp             EEEECSSC--TTHHHHHHHHEEEEEEEEECC
T ss_pred             eEEEccCC--HHHHHHHHHHHhcCCEEEEEe
Confidence            99875422  234566678899999988753

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.62  E-value=3.5e-05  Score=58.77  Aligned_cols=97  Identities=20%  Similarity=0.182  Sum_probs=62.0

Q ss_pred             CCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEc---cccccc---cCCcCCCC
Q 026122           74 NSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRG---RAETLG---KDVSFREQ  146 (243)
Q Consensus        74 ~~~~~VLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~---d~~~~~---~~~~~~~~  146 (243)
                      +++.+||-+|||+ |..++.+|+..+..+|+++|.+++.++.+++    +|..  .++..   +..+..   ........
T Consensus        27 ~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~--~vi~~~~~~~~~~~~~i~~~~~~~g  100 (182)
T d1vj0a2          27 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE----IGAD--LTLNRRETSVEERRKAIMDITHGRG  100 (182)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH----TTCS--EEEETTTSCHHHHHHHHHHHTTTSC
T ss_pred             CCCCEEEEECCCccchhheeccccccccccccccccccccccccc----ccce--EEEeccccchHHHHHHHHHhhCCCC
Confidence            4589999999983 6677788887754589999999987776654    4543  22222   211110   00001246


Q ss_pred             ceEEEEcCcccHHHHHHHHccCcccCeEEEEE
Q 026122          147 YDVAVARAVAEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       147 fD~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                      +|+|+-....  ...++.+.+.+++||++++.
T Consensus       101 ~Dvvid~vG~--~~~~~~a~~~l~~~G~iv~~  130 (182)
T d1vj0a2         101 ADFILEATGD--SRALLEGSELLRRGGFYSVA  130 (182)
T ss_dssp             EEEEEECSSC--TTHHHHHHHHEEEEEEEEEC
T ss_pred             ceEEeecCCc--hhHHHHHHHHhcCCCEEEEE
Confidence            9999864322  23456677899999998765

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.51  E-value=0.0003  Score=52.54  Aligned_cols=98  Identities=16%  Similarity=0.165  Sum_probs=61.9

Q ss_pred             CCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccc-cccc---c--CCcCCCC
Q 026122           74 NSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRA-ETLG---K--DVSFREQ  146 (243)
Q Consensus        74 ~~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~-~~~~---~--~~~~~~~  146 (243)
                      +++.+|+-+||| .|..++.+++.. +++|+++|.+++.++.+++    ++.. ..+...+. .+..   .  .......
T Consensus        25 ~~g~~vlV~G~G~vG~~~~~~ak~~-Ga~vi~v~~~~~r~~~a~~----~ga~-~~~~~~~~~~~~~~~~~~~~~~~g~g   98 (170)
T d1e3ja2          25 QLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKN----CGAD-VTLVVDPAKEEESSIIERIRSAIGDL   98 (170)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHH----TTCS-EEEECCTTTSCHHHHHHHHHHHSSSC
T ss_pred             CCCCEEEEEcccccchhhHhhHhhh-cccccccchHHHHHHHHHH----cCCc-EEEeccccccccchhhhhhhcccccC
Confidence            448899999988 566667777765 5799999999987776655    4443 22222111 1100   0  0001256


Q ss_pred             ceEEEEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122          147 YDVAVARAVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       147 fD~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      +|+|+-..-.  ...++.+.+.++++|++++.-
T Consensus        99 ~D~vid~~g~--~~~~~~a~~~~~~~G~iv~~G  129 (170)
T d1e3ja2          99 PNVTIDCSGN--EKCITIGINITRTGGTLMLVG  129 (170)
T ss_dssp             CSEEEECSCC--HHHHHHHHHHSCTTCEEEECS
T ss_pred             CceeeecCCC--hHHHHHHHHHHhcCCceEEEe
Confidence            8999864322  355667778999999987754

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=97.36  E-value=0.00013  Score=55.41  Aligned_cols=99  Identities=9%  Similarity=0.017  Sum_probs=65.9

Q ss_pred             CCCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccc-cc---cCCcCCCCc
Q 026122           73 CNSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAET-LG---KDVSFREQY  147 (243)
Q Consensus        73 ~~~~~~VLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~~---~~~~~~~~f  147 (243)
                      ++++.+|+=+|||. |..++.+++......|+.+|.+++..+.++    ++|...  ++...-.+ ..   ........+
T Consensus        26 v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~----~~Ga~~--~i~~~~~~~~~~~~~~~~~~~G~   99 (174)
T d1e3ia2          26 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAK----ALGATD--CLNPRELDKPVQDVITELTAGGV   99 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH----HTTCSE--EECGGGCSSCHHHHHHHHHTSCB
T ss_pred             CCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHH----HhCCCc--ccCCccchhhhhhhHhhhhcCCC
Confidence            45689999999997 888888998887679999999998665554    456542  23221111 00   000012579


Q ss_pred             eEEEEcCcccHHHHHHHHccCcccC-eEEEEEe
Q 026122          148 DVAVARAVAEMRILAEYCLPLVRVG-GLFVAAK  179 (243)
Q Consensus       148 D~I~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~  179 (243)
                      |+++-..-.  ...++.+.+.+++| |++++.-
T Consensus       100 d~vie~~G~--~~~~~~a~~~~~~g~G~~v~vG  130 (174)
T d1e3ia2         100 DYSLDCAGT--AQTLKAAVDCTVLGWGSCTVVG  130 (174)
T ss_dssp             SEEEESSCC--HHHHHHHHHTBCTTTCEEEECC
T ss_pred             cEEEEeccc--chHHHHHHHHhhcCCeEEEecC
Confidence            999975322  45677888899996 9987653

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=9.6e-05  Score=55.79  Aligned_cols=96  Identities=15%  Similarity=0.135  Sum_probs=62.7

Q ss_pred             CCCCCeEEEEcC--CCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccc---cCCcCCCCc
Q 026122           73 CNSNLKLVDVGT--GAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLG---KDVSFREQY  147 (243)
Q Consensus        73 ~~~~~~VLDiGc--G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---~~~~~~~~f  147 (243)
                      ++++.+||-.|+  |.|..++.+|+.. +++|++++.+++..+.+    +++|.+.  ++.-+-.++.   ........+
T Consensus        26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~-G~~vi~~~~~~~~~~~~----~~~Ga~~--vi~~~~~~~~~~i~~~t~~~g~   98 (174)
T d1yb5a2          26 VKAGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIV----LQNGAHE--VFNHREVNYIDKIKKYVGEKGI   98 (174)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHH----HHTTCSE--EEETTSTTHHHHHHHHHCTTCE
T ss_pred             CCCCCEEEEEecccccccccccccccc-Ccccccccccccccccc----cccCccc--ccccccccHHHHhhhhhccCCc
Confidence            345899999996  3566777888776 67999999998765555    4566643  3322111111   000112569


Q ss_pred             eEEEEcCcccHHHHHHHHccCcccCeEEEEE
Q 026122          148 DVAVARAVAEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       148 D~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                      |+|+....   ...++.+.+.|+|+|+++.+
T Consensus        99 d~v~d~~g---~~~~~~~~~~l~~~G~iv~~  126 (174)
T d1yb5a2          99 DIIIEMLA---NVNLSKDLSLLSHGGRVIVV  126 (174)
T ss_dssp             EEEEESCH---HHHHHHHHHHEEEEEEEEEC
T ss_pred             eEEeeccc---HHHHHHHHhccCCCCEEEEE
Confidence            99997543   34677788899999998875

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=97.32  E-value=0.00027  Score=53.16  Aligned_cols=97  Identities=14%  Similarity=0.120  Sum_probs=62.6

Q ss_pred             CCCCeEEEEcCCCC-hHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccc--cCCcCCCCceEE
Q 026122           74 NSNLKLVDVGTGAG-LPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLG--KDVSFREQYDVA  150 (243)
Q Consensus        74 ~~~~~VLDiGcG~G-~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~~~fD~I  150 (243)
                      +++.+||=+|||.. ..++.+++.....+|+++|.+++.++.+++    ++..  .++..+-+...  ........+|+|
T Consensus        31 ~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~----~ga~--~~i~~~~~~~~~~~~~~~~~g~d~v  104 (172)
T d1h2ba2          31 YPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAER----LGAD--HVVDARRDPVKQVMELTRGRGVNVA  104 (172)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHH----TTCS--EEEETTSCHHHHHHHHTTTCCEEEE
T ss_pred             CCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhh----cccc--eeecCcccHHHHHHHhhCCCCceEE
Confidence            45889999999854 345666766666799999999987666653    4543  33332211111  000112469999


Q ss_pred             EEcCcccHHHHHHHHccCcccCeEEEEE
Q 026122          151 VARAVAEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       151 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                      +-....  ...++.+.+.+++||++++.
T Consensus       105 id~~g~--~~~~~~a~~~l~~~G~iv~~  130 (172)
T d1h2ba2         105 MDFVGS--QATVDYTPYLLGRMGRLIIV  130 (172)
T ss_dssp             EESSCC--HHHHHHGGGGEEEEEEEEEC
T ss_pred             EEecCc--chHHHHHHHHHhCCCEEEEE
Confidence            875433  34578888999999998864

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.30  E-value=0.00017  Score=54.46  Aligned_cols=98  Identities=12%  Similarity=0.164  Sum_probs=63.4

Q ss_pred             CCCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccC--CcCCCCceE
Q 026122           73 CNSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD--VSFREQYDV  149 (243)
Q Consensus        73 ~~~~~~VLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~--~~~~~~fD~  149 (243)
                      ++++.+|+=+|||. |..++.+++..+...|+.+|.+++.++.+++    +|..  +++..+-++....  ...++.+|+
T Consensus        26 ~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~----~Ga~--~~i~~~~~~~~~~i~~~t~gg~D~   99 (174)
T d1f8fa2          26 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQ----LGAT--HVINSKTQDPVAAIKEITDGGVNF   99 (174)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHH----HTCS--EEEETTTSCHHHHHHHHTTSCEEE
T ss_pred             CCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHH----cCCe--EEEeCCCcCHHHHHHHHcCCCCcE
Confidence            45689999999973 3356667767666788999999987776654    4543  3443332222110  001257999


Q ss_pred             EEEcCcccHHHHHHHHccCcccCeEEEEE
Q 026122          150 AVARAVAEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       150 I~~~~~~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                      |+-..-.  ...++.+.+.++|+|++++.
T Consensus       100 vid~~G~--~~~~~~~~~~~~~~G~i~~~  126 (174)
T d1f8fa2         100 ALESTGS--PEILKQGVDALGILGKIAVV  126 (174)
T ss_dssp             EEECSCC--HHHHHHHHHTEEEEEEEEEC
T ss_pred             EEEcCCc--HHHHHHHHhcccCceEEEEE
Confidence            9965322  45567778899999998775

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.27  E-value=0.0004  Score=57.80  Aligned_cols=59  Identities=20%  Similarity=0.250  Sum_probs=47.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcccccc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETL  137 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~  137 (243)
                      +.+|||||.|.|.++..+.......+|+++|+++...+..++...   -.+++++++|+..+
T Consensus        44 ~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~---~~~~~ii~~D~l~~  102 (322)
T d1i4wa_          44 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE---GSPLQILKRDPYDW  102 (322)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT---TSSCEEECSCTTCH
T ss_pred             CCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc---CCCcEEEeCchhhc
Confidence            678999999999999888766333589999999998888776532   24689999998754

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=0.0037  Score=51.26  Aligned_cols=142  Identities=9%  Similarity=0.062  Sum_probs=81.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDWK-VTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      +.+|+|+.||.|..++.+....-..+ |.++|+++.+++..+.|.     .+..++++|+.++..........|+++...
T Consensus         2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~-----~~~~~~~~di~~~~~~~~~~~~~Dll~ggp   76 (343)
T d1g55a_           2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNF-----PHTQLLAKTIEGITLEEFDRLSFDMILMSP   76 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC-----TTSCEECSCGGGCCHHHHHHHCCSEEEECC
T ss_pred             CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHC-----CCCCcccCchhhCCHhHcCCCCccEEEeec
Confidence            46899999999988766655421223 679999998777766552     345678888887654311013689999841


Q ss_pred             -------------cc-c----HHHHHHHHccC-cccCeEEEEEeCC--CcHHHHHHHHHHHHHhCCeeeEEEEEecC--C
Q 026122          155 -------------VA-E----MRILAEYCLPL-VRVGGLFVAAKGH--DPQEEVKNSERAVQLMGASLLQLCSVESQ--S  211 (243)
Q Consensus       155 -------------~~-~----~~~~l~~~~~~-LkpgG~l~~~~~~--~~~~~~~~~~~~l~~~g~~~~~~~~~~~~--~  211 (243)
                                   .. +    ...+++.+..+ -+|. .++++.-.  ........+.+.|++.|+.+... -+...  +
T Consensus        77 PCq~fS~ag~~~~~~d~r~~l~~~~~~~i~~~~~kPk-~~i~ENV~~l~~~~~~~~i~~~l~~~GY~v~~~-vlna~dyG  154 (343)
T d1g55a_          77 PCQPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLPK-YILLENVKGFEVSSTRDLLIQTIENCGFQYQEF-LLSPTSLG  154 (343)
T ss_dssp             C------------------CHHHHHHHHGGGCSSCCS-EEEEEEETTGGGSHHHHHHHHHHHHTTEEEEEE-EECGGGGT
T ss_pred             ccccccccccccccccccccccchhhhhHhhhcCCCc-eeeeeccCCcccchhhHHHHhhhhcccccccee-eeeccccC
Confidence                         01 1    23333333222 1574 34444322  22334566778889999976442 23321  2


Q ss_pred             C--CCceEEEEEEee
Q 026122          212 P--FGQRTAVVCLKS  224 (243)
Q Consensus       212 ~--~~~r~~v~~~k~  224 (243)
                      .  ...|.+++..+.
T Consensus       155 vPQ~R~Rvfivg~r~  169 (343)
T d1g55a_         155 IPNSRLRYFLIAKLQ  169 (343)
T ss_dssp             CSCCCCEEEEEEEES
T ss_pred             CcccceeEEEEEEeC
Confidence            2  235666655544

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.16  E-value=0.0011  Score=49.56  Aligned_cols=100  Identities=16%  Similarity=0.137  Sum_probs=62.6

Q ss_pred             CCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEE-cccccccc--CCcCCCCceE
Q 026122           74 NSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVR-GRAETLGK--DVSFREQYDV  149 (243)
Q Consensus        74 ~~~~~VLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~-~d~~~~~~--~~~~~~~fD~  149 (243)
                      +++.+|+=+|||+ |..+..+++..+..+|+++|.+++.++.++    ++|.+.+.... .+..+...  .......+|+
T Consensus        25 ~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~----~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dv  100 (171)
T d1pl8a2          25 TLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAK----EIGADLVLQISKESPQEIARKVEGQLGCKPEV  100 (171)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH----HTTCSEEEECSSCCHHHHHHHHHHHHTSCCSE
T ss_pred             CCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHH----HhCCcccccccccccccccccccccCCCCceE
Confidence            4488999999985 445666777765558999999998777665    45554221111 11111100  0011246899


Q ss_pred             EEEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122          150 AVARAVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       150 I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      |+-..-.  ...++.+.+.+++||++++.-
T Consensus       101 vid~~G~--~~~~~~a~~~~~~gG~iv~~G  128 (171)
T d1pl8a2         101 TIECTGA--EASIQAGIYATRSGGTLVLVG  128 (171)
T ss_dssp             EEECSCC--HHHHHHHHHHSCTTCEEEECS
T ss_pred             EEeccCC--chhHHHHHHHhcCCCEEEEEe
Confidence            9875432  446677888999999988754

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.15  E-value=0.00016  Score=54.16  Aligned_cols=98  Identities=10%  Similarity=0.073  Sum_probs=63.6

Q ss_pred             CCCCeEEEEcCC--CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcccccccc---CCcCCCCce
Q 026122           74 NSNLKLVDVGTG--AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK---DVSFREQYD  148 (243)
Q Consensus        74 ~~~~~VLDiGcG--~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~---~~~~~~~fD  148 (243)
                      +++.+|+=+|||  .|..++.+++.....+|+++|.+++..+.+++    +|..  .++..+-.+...   .....+.+|
T Consensus        26 ~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~----~Ga~--~~i~~~~~~~~~~~~~~~~~~~~d   99 (170)
T d1jvba2          26 DPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKR----AGAD--YVINASMQDPLAEIRRITESKGVD   99 (170)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHH----HTCS--EEEETTTSCHHHHHHHHTTTSCEE
T ss_pred             CCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHH----cCCc--eeeccCCcCHHHHHHHHhhcccch
Confidence            458899999974  44455666666666799999999987777654    4543  233333222211   001125699


Q ss_pred             EEEEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122          149 VAVARAVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       149 ~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      +|+-....  ...++.+.+.++|||++++.-
T Consensus       100 ~vid~~g~--~~~~~~a~~~l~~~G~iv~~G  128 (170)
T d1jvba2         100 AVIDLNNS--EKTLSVYPKALAKQGKYVMVG  128 (170)
T ss_dssp             EEEESCCC--HHHHTTGGGGEEEEEEEEECC
T ss_pred             hhhccccc--chHHHhhhhhcccCCEEEEec
Confidence            99975432  555677889999999988653

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=96.97  E-value=0.0075  Score=48.82  Aligned_cols=134  Identities=13%  Similarity=0.143  Sum_probs=81.6

Q ss_pred             eEEEEcCCCChHHHHHHHHCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC--
Q 026122           78 KLVDVGTGAGLPGLVLAIACPDWK-VTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA--  154 (243)
Q Consensus        78 ~VLDiGcG~G~~~~~la~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~--  154 (243)
                      +|+|+-||.|.+.+.+.+.  +.+ +.++|+++.+.+..+.|.     . -.++.+|+.++....  -...|+++..-  
T Consensus         2 k~~~lF~G~Gg~~~gl~~a--G~~~~~a~e~d~~a~~~~~~N~-----~-~~~~~~Di~~~~~~~--~~~~dll~~g~PC   71 (324)
T d1dcta_           2 NLISLFSGAGGLDLGFQKA--GFRIICANEYDKSIWKTYESNH-----S-AKLIKGDISKISSDE--FPKCDGIIGGPPC   71 (324)
T ss_dssp             EEEEESCSSCHHHHHHHHH--TCEEEEEEECCHHHHHHHHHHC-----C-SEEEESCTTTSCGGG--SCCCSEEEECCCC
T ss_pred             eEEEeCcCcCHHHHHHHHC--CCEEEEEEeCCHHHHHHHHHHC-----C-CCCccCChhhCCHhH--cccccEEeecccc
Confidence            7999999999987666655  454 559999998777666552     2 356789999986542  14689999841  


Q ss_pred             -----------ccc-----HHHHHHHHccCcccCeEEEEEeC-----CCcHHHHHHHHHHHHHhCCeeeEEEEEec--CC
Q 026122          155 -----------VAE-----MRILAEYCLPLVRVGGLFVAAKG-----HDPQEEVKNSERAVQLMGASLLQLCSVES--QS  211 (243)
Q Consensus       155 -----------~~~-----~~~~l~~~~~~LkpgG~l~~~~~-----~~~~~~~~~~~~~l~~~g~~~~~~~~~~~--~~  211 (243)
                                 ..+     +..+++ +...++|. .++++.-     ......+..++..+...|+.+.... +..  -+
T Consensus        72 q~fS~ag~~~g~~d~r~~l~~~~~~-~i~~~~Pk-~~~lENV~~~~~~~~~~~~~~~l~~l~~lGY~v~~~v-lna~~~G  148 (324)
T d1dcta_          72 QSWSEGGSLRGIDDPRGKLFYEYIR-ILKQKKPI-FFLAENVKGMMAQRHNKAVQEFIQEFDNAGYDVHIIL-LNANDYG  148 (324)
T ss_dssp             TTTSSSSCCCCSSSHHHHHHHHHHH-HHHHHCCS-EEEEEEEGGGGSGGGHHHHHHHHHHHHHHHEEEEEEE-EEGGGGT
T ss_pred             cccccccccccccccccchHHHHHH-HHHhhCCc-eeeccccccccccccchhhHHHHhHHhhCCCccceee-eeccccc
Confidence                       111     122222 33456785 3344331     2335567777888888898765422 221  12


Q ss_pred             CC--CceEEEEEEee
Q 026122          212 PF--GQRTAVVCLKS  224 (243)
Q Consensus       212 ~~--~~r~~v~~~k~  224 (243)
                      .+  ..|.+++.-+.
T Consensus       149 vPQ~R~R~fiv~~r~  163 (324)
T d1dcta_         149 VAQDRKRVFYIGFRK  163 (324)
T ss_dssp             CSBCCEEEEEEEEEG
T ss_pred             CchhhceeeEeeecC
Confidence            22  35666555443

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=96.91  E-value=0.0098  Score=48.47  Aligned_cols=115  Identities=14%  Similarity=0.074  Sum_probs=74.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHCCCC-EEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIACPDW-KVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      +.+|||+-||.|..++.+.+.  +. .|.++|+++.+++..+.|..     +  ..++|+.++....  -..+|+++..-
T Consensus        11 ~lrv~~lFsG~Gg~~~gl~~a--G~~~v~a~e~d~~a~~~~~~N~~-----~--~~~~Di~~~~~~~--~~~~Dll~ggp   79 (327)
T d2c7pa1          11 GLRFIDLFAGLGGFRLALESC--GAECVYSNEWDKYAQEVYEMNFG-----E--KPEGDITQVNEKT--IPDHDILCAGF   79 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHT--TCEEEEEECCCHHHHHHHHHHHS-----C--CCBSCGGGSCGGG--SCCCSEEEEEC
T ss_pred             CCeEEEECccccHHHHHHHHC--CCeEEEEEeCCHHHHHHHHHHCC-----C--CCcCchhcCchhh--cceeeeeeccc
Confidence            789999999999887666543  44 45779999998888777653     1  2357888876542  14699999831


Q ss_pred             -------------cc-----cHHHHHHHHccCcccCeEEEEEe--C---CCcHHHHHHHHHHHHHhCCeeeE
Q 026122          155 -------------VA-----EMRILAEYCLPLVRVGGLFVAAK--G---HDPQEEVKNSERAVQLMGASLLQ  203 (243)
Q Consensus       155 -------------~~-----~~~~~l~~~~~~LkpgG~l~~~~--~---~~~~~~~~~~~~~l~~~g~~~~~  203 (243)
                                   ..     -+..+++ +.+.++|. .++++.  +   ......+..+.+.++..|+.+..
T Consensus        80 PCq~fS~ag~~~g~~d~r~~l~~~~~~-~i~~~kP~-~~~lENV~~~~~~~~~~~~~~i~~~l~~lGY~~~~  149 (327)
T d2c7pa1          80 PCQAFSISGKQKGFEDSRGTLFFDIAR-IVREKKPK-VVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHA  149 (327)
T ss_dssp             CCTTTCTTSCCCGGGSTTSCHHHHHHH-HHHHHCCS-EEEEEEEGGGGTGGGGHHHHHHHHHHHHTTBCCEE
T ss_pred             ccchhhhhhhhcCCcccchhHHHHHHH-HHhccCCc-EEecccchhhhhhccchhhHHhhhHHHhcCCccee
Confidence                         11     1233333 33456775 444433  1   23345567788889999987653

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.86  E-value=0.00078  Score=50.01  Aligned_cols=96  Identities=15%  Similarity=0.065  Sum_probs=58.3

Q ss_pred             CCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccC-CcCCCCceEEE
Q 026122           74 NSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD-VSFREQYDVAV  151 (243)
Q Consensus        74 ~~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~~~fD~I~  151 (243)
                      +++.+|+=+||| .|..++.+++.. +++|+++|.+++.++.++    ++|..  .++..+-.+.... ......+|.++
T Consensus        26 ~~g~~VlV~GaG~vG~~~~~~ak~~-G~~Vi~~~~~~~~~~~a~----~~Ga~--~~i~~~~~~~~~~~~~~~~g~~~~i   98 (166)
T d1llua2          26 RPGQWVAISGIGGLGHVAVQYARAM-GLHVAAIDIDDAKLELAR----KLGAS--LTVNARQEDPVEAIQRDIGGAHGVL   98 (166)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHH----HTTCS--EEEETTTSCHHHHHHHHHSSEEEEE
T ss_pred             CCCCEEEEeeccccHHHHHHHHHHc-CCccceecchhhHHHhhh----ccCcc--ccccccchhHHHHHHHhhcCCcccc
Confidence            448899989987 355666777776 589999999998776654    45653  2333222221100 00012344444


Q ss_pred             EcCcccHHHHHHHHccCcccCeEEEEE
Q 026122          152 ARAVAEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       152 ~~~~~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                      .....  ...++.+.+.|++||++++.
T Consensus        99 ~~~~~--~~~~~~~~~~l~~~G~iv~~  123 (166)
T d1llua2          99 VTAVS--NSAFGQAIGMARRGGTIALV  123 (166)
T ss_dssp             ECCSC--HHHHHHHHTTEEEEEEEEEC
T ss_pred             ccccc--chHHHHHHHHhcCCcEEEEE
Confidence            33222  34567788999999998765

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.56  E-value=0.0014  Score=48.84  Aligned_cols=96  Identities=17%  Similarity=0.136  Sum_probs=60.3

Q ss_pred             CCCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEE
Q 026122           73 CNSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        73 ~~~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      ++++++|+=+||| .|..++.+|+.. +++++++|.+++..+.++    ++|..  .++...-.+....  ..+.+|+++
T Consensus        28 ~~~G~~VlI~GaG~vG~~a~qlak~~-Ga~~i~~~~~~~~~~~a~----~lGad--~~i~~~~~~~~~~--~~~~~D~vi   98 (168)
T d1uufa2          28 AGPGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAK----ALGAD--EVVNSRNADEMAA--HLKSFDFIL   98 (168)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHH----HHTCS--EEEETTCHHHHHT--TTTCEEEEE
T ss_pred             CCCCCEEEEeccchHHHHHHHHhhcc-cccchhhccchhHHHHHh----ccCCc--EEEECchhhHHHH--hcCCCceee
Confidence            3558999999987 355667777775 678899999998665554    45654  2332222221111  125799998


Q ss_pred             EcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122          152 ARAVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       152 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      -..-.  ...++.+.+.++++|++++.-
T Consensus        99 d~~g~--~~~~~~~~~~l~~~G~iv~~G  124 (168)
T d1uufa2          99 NTVAA--PHNLDDFTTLLKRDGTMTLVG  124 (168)
T ss_dssp             ECCSS--CCCHHHHHTTEEEEEEEEECC
T ss_pred             eeeec--chhHHHHHHHHhcCCEEEEec
Confidence            64321  112345667999999988753

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=96.49  E-value=0.002  Score=48.38  Aligned_cols=98  Identities=11%  Similarity=-0.055  Sum_probs=58.8

Q ss_pred             CCCCCeEEEEcCCCC-hHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEc---c--ccccccCCcCCCC
Q 026122           73 CNSNLKLVDVGTGAG-LPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRG---R--AETLGKDVSFREQ  146 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G-~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~---d--~~~~~~~~~~~~~  146 (243)
                      ++++++|+=+|||.. ..++.+++.....+|+++|.+++.++.++    ++|..  .+++.   |  ..+.... ...+.
T Consensus        25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~----~lGa~--~~i~~~~~d~~~~~~~~~-~~~~G   97 (174)
T d1p0fa2          25 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAI----ELGAT--ECLNPKDYDKPIYEVICE-KTNGG   97 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH----HTTCS--EEECGGGCSSCHHHHHHH-HTTSC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHH----HcCCc--EEEcCCCchhHHHHHHHH-hcCCC
Confidence            456999999999853 35566677666679999999998777765    45653  23321   2  1111110 11246


Q ss_pred             ceEEEEcCcccHHHHHHHHccCc-ccCeEEEEEe
Q 026122          147 YDVAVARAVAEMRILAEYCLPLV-RVGGLFVAAK  179 (243)
Q Consensus       147 fD~I~~~~~~~~~~~l~~~~~~L-kpgG~l~~~~  179 (243)
                      +|+|+-....  ...++.....+ +++|.+++.-
T Consensus        98 ~d~vid~~g~--~~~~~~~~~~~~~~~G~~v~vG  129 (174)
T d1p0fa2          98 VDYAVECAGR--IETMMNALQSTYCGSGVTVVLG  129 (174)
T ss_dssp             BSEEEECSCC--HHHHHHHHHTBCTTTCEEEECC
T ss_pred             CcEEEEcCCC--chHHHHHHHHHHHhcCceEEEE
Confidence            9998865322  23334444455 5568877644

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.47  E-value=0.00098  Score=49.97  Aligned_cols=92  Identities=15%  Similarity=0.079  Sum_probs=58.7

Q ss_pred             CCCCeEEEEcC-C-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEE
Q 026122           74 NSNLKLVDVGT-G-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        74 ~~~~~VLDiGc-G-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      +++++||=.|+ | .|..++.+|+.. +++|++++.+++..+.++    ++|.+.+ +-..+.....   .....+|+|+
T Consensus        26 ~~g~~VlI~ga~G~vG~~aiqlak~~-G~~vi~~~~~~~~~~~~~----~lGa~~~-i~~~~~~~~~---~~~~g~D~v~   96 (171)
T d1iz0a2          26 RPGEKVLVQAAAGALGTAAVQVARAM-GLRVLAAASRPEKLALPL----ALGAEEA-ATYAEVPERA---KAWGGLDLVL   96 (171)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSGGGSHHHH----HTTCSEE-EEGGGHHHHH---HHTTSEEEEE
T ss_pred             CCCCEEEEEeccccchhhhhhhhccc-cccccccccccccccccc----cccccee-eehhhhhhhh---hccccccccc
Confidence            45889998885 3 356677788776 579999999987666554    4665432 1111211111   1125699998


Q ss_pred             EcCcccHHHHHHHHccCcccCeEEEEE
Q 026122          152 ARAVAEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       152 ~~~~~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                      -..-.    .++.+.+.|+|+|+++.+
T Consensus        97 d~~G~----~~~~~~~~l~~~G~~v~~  119 (171)
T d1iz0a2          97 EVRGK----EVEESLGLLAHGGRLVYI  119 (171)
T ss_dssp             ECSCT----THHHHHTTEEEEEEEEEC
T ss_pred             cccch----hHHHHHHHHhcCCcEEEE
Confidence            63322    246677899999998764

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.41  E-value=0.0094  Score=44.58  Aligned_cols=100  Identities=7%  Similarity=-0.044  Sum_probs=59.3

Q ss_pred             CCCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEc-ccccc---ccCCcCCCCc
Q 026122           73 CNSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRG-RAETL---GKDVSFREQY  147 (243)
Q Consensus        73 ~~~~~~VLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~-d~~~~---~~~~~~~~~f  147 (243)
                      ++++++|+=+|||. |..++.+++.....+|+++|.+++.++.|++.    |-+  .+++. +-...   .........+
T Consensus        27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~----GA~--~~in~~~~~~~~~~~~~~~~g~G~  100 (176)
T d1d1ta2          27 VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAV----GAT--ECISPKDSTKPISEVLSEMTGNNV  100 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHH----TCS--EEECGGGCSSCHHHHHHHHHTSCC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhc----CCc--EEECccccchHHHHHHHHhccccc
Confidence            45689999999984 44566777777667999999999988777654    433  22221 11110   0000012569


Q ss_pred             eEEEEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122          148 DVAVARAVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       148 D~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      |+++-... ....+...+....+.+|++++.-
T Consensus       101 d~vi~~~g-~~~~~~~a~~~~~~~~G~~v~vG  131 (176)
T d1d1ta2         101 GYTFEVIG-HLETMIDALASCHMNYGTSVVVG  131 (176)
T ss_dssp             CEEEECSC-CHHHHHHHHTTSCTTTCEEEECS
T ss_pred             eEEEEeCC-chHHHHHHHHHhhcCCeEEEEEE
Confidence            98886432 22333344445556668877653

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=96.40  E-value=0.0017  Score=48.59  Aligned_cols=97  Identities=15%  Similarity=0.079  Sum_probs=62.0

Q ss_pred             CCCCCeEEEEcCCC--ChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcccccccc---CCcCCCCc
Q 026122           73 CNSNLKLVDVGTGA--GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK---DVSFREQY  147 (243)
Q Consensus        73 ~~~~~~VLDiGcG~--G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~---~~~~~~~f  147 (243)
                      ++++.+||=.|+|+  |..++.+|+.. +++|++++.|++..+.++    ++|.+  .++..+-+++..   .......+
T Consensus        26 l~~g~~Vlv~ga~g~vG~~~iqlak~~-Ga~Vi~~~~s~~k~~~~~----~lGa~--~vi~~~~~d~~~~v~~~t~g~g~   98 (179)
T d1qora2          26 IKPDEQFLFHAAAGGVGLIACQWAKAL-GAKLIGTVGTAQKAQSAL----KAGAW--QVINYREEDLVERLKEITGGKKV   98 (179)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHH----HHTCS--EEEETTTSCHHHHHHHHTTTCCE
T ss_pred             CCCCCEEEEEccccccchHHHHHHHHh-CCeEeecccchHHHHHHH----hcCCe--EEEECCCCCHHHHHHHHhCCCCe
Confidence            35588999887665  55777888775 689999999998777665    45654  233322222211   00012569


Q ss_pred             eEEEEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122          148 DVAVARAVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       148 D~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      |+|+-....+   .++.+...++++|++++..
T Consensus        99 d~v~d~~g~~---~~~~~~~~l~~~G~~v~~g  127 (179)
T d1qora2          99 RVVYDSVGRD---TWERSLDCLQRRGLMVSFG  127 (179)
T ss_dssp             EEEEECSCGG---GHHHHHHTEEEEEEEEECC
T ss_pred             EEEEeCccHH---HHHHHHHHHhcCCeeeecc
Confidence            9988754332   3466778999999977644

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=96.38  E-value=0.003  Score=50.34  Aligned_cols=102  Identities=12%  Similarity=-0.057  Sum_probs=70.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC----C------------------------------------CCEEEEEeCCHHHHHHH
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC----P------------------------------------DWKVTLLESMNKRCVFL  115 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~----~------------------------------------~~~v~~vD~s~~~~~~a  115 (243)
                      +..++|-.||||.+.+..|...    |                                    ..++.|.|+++++++.+
T Consensus        51 ~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~~A  130 (249)
T d1o9ga_          51 PVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQAA  130 (249)
T ss_dssp             CEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred             CCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHHHH
Confidence            5679999999999988777531    0                                    13467889999999888


Q ss_pred             ---HHHHHHcCCCC-EEEEEccccccccCC--cCCCCceEEEEcC-----------c--ccHHHHHHHHccCcccCeEEE
Q 026122          116 ---EHAVSLTQLLN-VQIVRGRAETLGKDV--SFREQYDVAVARA-----------V--AEMRILAEYCLPLVRVGGLFV  176 (243)
Q Consensus       116 ---~~~~~~~~~~~-v~~~~~d~~~~~~~~--~~~~~fD~I~~~~-----------~--~~~~~~l~~~~~~LkpgG~l~  176 (243)
                         ++|++..|+.. +++.+.|+.+.....  ..+...++|++|-           .  ..+..+...+++.+..-..++
T Consensus       131 ~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~l~~~~p~~s~~~  210 (249)
T d1o9ga_         131 RRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVIA  210 (249)
T ss_dssp             HHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEEE
T ss_pred             HHHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHHHHHHHHHHccCCCCcEEE
Confidence               46888888865 999999986643210  0125689999973           1  136677777777775444444


Q ss_pred             E
Q 026122          177 A  177 (243)
Q Consensus       177 ~  177 (243)
                      +
T Consensus       211 i  211 (249)
T d1o9ga_         211 V  211 (249)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.32  E-value=0.0015  Score=48.81  Aligned_cols=93  Identities=17%  Similarity=0.287  Sum_probs=64.4

Q ss_pred             CCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           76 NLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        76 ~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      +.+|+=||+| .|..++..|... +++|+.+|.+.+.++..+....    .+++....+-+.+....   ...|+|+...
T Consensus        32 pa~V~ViGaGvaG~~A~~~A~~l-GA~V~~~D~~~~~l~~l~~~~~----~~~~~~~~~~~~l~~~~---~~aDivI~aa  103 (168)
T d1pjca1          32 PGKVVILGGGVVGTEAAKMAVGL-GAQVQIFDINVERLSYLETLFG----SRVELLYSNSAEIETAV---AEADLLIGAV  103 (168)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHG----GGSEEEECCHHHHHHHH---HTCSEEEECC
T ss_pred             CcEEEEECCChHHHHHHHHHhhC-CCEEEEEeCcHHHHHHHHHhhc----ccceeehhhhhhHHHhh---ccCcEEEEee
Confidence            6899999999 566777888776 6899999999987776655433    24566655554443321   4689999865


Q ss_pred             cc----cHHHHHHHHccCcccCeEEE
Q 026122          155 VA----EMRILAEYCLPLVRVGGLFV  176 (243)
Q Consensus       155 ~~----~~~~~l~~~~~~LkpgG~l~  176 (243)
                      ..    .+.-+-+++.+.+|||..++
T Consensus       104 lipG~~aP~lIt~~mv~~Mk~GSVIV  129 (168)
T d1pjca1         104 LVPGRRAPILVPASLVEQMRTGSVIV  129 (168)
T ss_dssp             CCTTSSCCCCBCHHHHTTSCTTCEEE
T ss_pred             ecCCcccCeeecHHHHhhcCCCcEEE
Confidence            21    22233356677899998765

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.21  E-value=0.0033  Score=46.36  Aligned_cols=97  Identities=16%  Similarity=0.032  Sum_probs=58.0

Q ss_pred             CCCCeEEEEcCCCCh-HHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccC-CcCCCCceEEE
Q 026122           74 NSNLKLVDVGTGAGL-PGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD-VSFREQYDVAV  151 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~-~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~~~fD~I~  151 (243)
                      +++.+||=.|||+-. .++.+++. .+++|+++|.+++.+++++    ++|...  ++...-.+.... ......+|.++
T Consensus        26 ~~g~~vlv~G~G~iG~~a~~~a~~-~g~~v~~~~~~~~r~~~~k----~~Ga~~--~~~~~~~~~~~~~~~~~~~~~~~v   98 (168)
T d1rjwa2          26 KPGEWVAIYGIGGLGHVAVQYAKA-MGLNVVAVDIGDEKLELAK----ELGADL--VVNPLKEDAAKFMKEKVGGVHAAV   98 (168)
T ss_dssp             CTTCEEEEECCSTTHHHHHHHHHH-TTCEEEEECSCHHHHHHHH----HTTCSE--EECTTTSCHHHHHHHHHSSEEEEE
T ss_pred             CCCCEEEEeecccchhhhhHHHhc-CCCeEeccCCCHHHhhhhh----hcCcce--ecccccchhhhhcccccCCCceEE
Confidence            448899999998644 45556655 4579999999998776654    456532  222111111100 00012345455


Q ss_pred             EcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122          152 ARAVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       152 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      .....  ...++.+.+.++|+|++++.-
T Consensus        99 ~~~~~--~~~~~~a~~~l~~~G~i~~~g  124 (168)
T d1rjwa2          99 VTAVS--KPAFQSAYNSIRRGGACVLVG  124 (168)
T ss_dssp             ESSCC--HHHHHHHHHHEEEEEEEEECC
T ss_pred             eecCC--HHHHHHHHHHhccCCceEecc
Confidence            44433  456778888999999988753

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.10  E-value=0.002  Score=48.37  Aligned_cols=96  Identities=10%  Similarity=0.149  Sum_probs=59.6

Q ss_pred             CCCCCeEEEEcC--CCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcccccccc---CCcCCCCc
Q 026122           73 CNSNLKLVDVGT--GAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK---DVSFREQY  147 (243)
Q Consensus        73 ~~~~~~VLDiGc--G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~---~~~~~~~f  147 (243)
                      ++++++||=.|.  |.|..++.+|+.. +++|++++.+++..+.++    +.|...  ++..+-.++..   .......+
T Consensus        23 ~~~g~~VlI~ga~g~vG~~~iqla~~~-g~~vi~~~~~~~~~~~l~----~~Ga~~--vi~~~~~~~~~~v~~~t~~~g~   95 (183)
T d1pqwa_          23 LSPGERVLIHSATGGVGMAAVSIAKMI-GARIYTTAGSDAKREMLS----RLGVEY--VGDSRSVDFADEILELTDGYGV   95 (183)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHH----TTCCSE--EEETTCSTHHHHHHHHTTTCCE
T ss_pred             CCCCCEEEEECCCCCcccccchhhccc-cccceeeecccccccccc----cccccc--cccCCccCHHHHHHHHhCCCCE
Confidence            345889998773  3555677777665 689999998887655544    456543  22222222111   00012569


Q ss_pred             eEEEEcCcccHHHHHHHHccCcccCeEEEEE
Q 026122          148 DVAVARAVAEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       148 D~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                      |+|+.....   +.++.+.+.|+++|+++.+
T Consensus        96 d~v~d~~g~---~~~~~~~~~l~~~G~~v~~  123 (183)
T d1pqwa_          96 DVVLNSLAG---EAIQRGVQILAPGGRFIEL  123 (183)
T ss_dssp             EEEEECCCT---HHHHHHHHTEEEEEEEEEC
T ss_pred             EEEEecccc---hHHHHHHHHhcCCCEEEEE
Confidence            999975432   3556777899999998764

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.04  E-value=0.0053  Score=45.56  Aligned_cols=99  Identities=7%  Similarity=-0.069  Sum_probs=61.7

Q ss_pred             CCCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcc-c-cccc--cCCcCCCCc
Q 026122           73 CNSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGR-A-ETLG--KDVSFREQY  147 (243)
Q Consensus        73 ~~~~~~VLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d-~-~~~~--~~~~~~~~f  147 (243)
                      ++++.+||=.||| .|..++.+++......|+++|.+++..+.++    ++|...  ++..+ - .+..  ......+.+
T Consensus        26 ~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak----~lGa~~--~i~~~~~~~~~~~~~~~~~~~g~   99 (176)
T d2fzwa2          26 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAK----EFGATE--CINPQDFSKPIQEVLIEMTDGGV   99 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH----HHTCSE--EECGGGCSSCHHHHHHHHTTSCB
T ss_pred             CCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHH----HhCCcE--EEeCCchhhHHHHHHHHHcCCCC
Confidence            4569999999988 3335666677766679999999998766554    456542  22211 1 1100  000112569


Q ss_pred             eEEEEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122          148 DVAVARAVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       148 D~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      |+|+-..-.  ...++.+...+++||.+++..
T Consensus       100 D~vid~~G~--~~~~~~~~~~~~~g~~~~~v~  129 (176)
T d2fzwa2         100 DYSFECIGN--VKVMRAALEACHKGWGVSVVV  129 (176)
T ss_dssp             SEEEECSCC--HHHHHHHHHTBCTTTCEEEEC
T ss_pred             cEeeecCCC--HHHHHHHHHhhcCCceeEEEE
Confidence            999975432  456677788899988776654

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=96.03  E-value=0.0053  Score=48.08  Aligned_cols=45  Identities=13%  Similarity=0.062  Sum_probs=37.2

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHH
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVS  120 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~  120 (243)
                      ++++.|||--||+|..+.+..+.  +-+.+|+|++++.++.|++.++
T Consensus       211 ~~gd~VlDpF~GSGTT~~aa~~~--~R~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         211 NPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCchHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHHc
Confidence            35889999999999987444433  5799999999999999998765

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.97  E-value=0.012  Score=46.50  Aligned_cols=48  Identities=10%  Similarity=0.135  Sum_probs=40.0

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ  123 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~  123 (243)
                      ++++.|||--||+|..+++....  +-+.+|+|++++..+.+++.++...
T Consensus       206 ~~gdiVLDpF~GSGTT~~Aa~~l--gR~~ig~El~~~y~~~a~~Ri~~~~  253 (279)
T d1eg2a_         206 HPGSTVLDFFAGSGVTARVAIQE--GRNSICTDAAPVFKEYYQKQLTFLQ  253 (279)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHH--TCEEEEEESSTHHHHHHHHHHHHC-
T ss_pred             CCCCEEEecCCCCcHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhh
Confidence            35889999999999987665554  5699999999999999999887643

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=95.79  E-value=0.01  Score=44.45  Aligned_cols=96  Identities=8%  Similarity=0.000  Sum_probs=61.5

Q ss_pred             CCCCCeEEEEcCCCC--hHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEcccccc---ccCCcCCCCc
Q 026122           73 CNSNLKLVDVGTGAG--LPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETL---GKDVSFREQY  147 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G--~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~---~~~~~~~~~f  147 (243)
                      ++++++||=.|+|.|  ..++.+|+.. +++|++++.+++..+.++    ..|...  ++..+-++.   .........+
T Consensus        27 v~~G~~VlV~ga~ggvG~~aiqlak~~-Ga~vi~~~~~~~~~~~~~----~~Ga~~--vi~~~~~~~~~~~~~~~~~~Gv   99 (182)
T d1v3va2          27 VKGGETVLVSAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKIAYLK----QIGFDA--AFNYKTVNSLEEALKKASPDGY   99 (182)
T ss_dssp             CCSSCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHH----HTTCSE--EEETTSCSCHHHHHHHHCTTCE
T ss_pred             CCCCCEEEEEeCCCchhHHHHHHHHcc-CCEEEEeCCCHHHHHHHH----hhhhhh--hcccccccHHHHHHHHhhcCCC
Confidence            355899998787654  4567777775 689999999987655544    445442  222221111   0100112569


Q ss_pred             eEEEEcCcccHHHHHHHHccCcccCeEEEEE
Q 026122          148 DVAVARAVAEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       148 D~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                      |+|+-.. .  .+.++.+.+.|+++|.++.+
T Consensus       100 d~v~D~v-G--~~~~~~~~~~l~~~G~~v~~  127 (182)
T d1v3va2         100 DCYFDNV-G--GEFLNTVLSQMKDFGKIAIC  127 (182)
T ss_dssp             EEEEESS-C--HHHHHHHGGGEEEEEEEEEC
T ss_pred             ceeEEec-C--chhhhhhhhhccCCCeEEee
Confidence            9988743 2  35678899999999997764

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=95.66  E-value=0.0048  Score=49.89  Aligned_cols=46  Identities=17%  Similarity=0.064  Sum_probs=36.9

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH
Q 026122           74 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSL  121 (243)
Q Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~  121 (243)
                      ++++.|||.-||+|..+.+....  +-+.+|+|+++++++.+++.+..
T Consensus       249 ~~gdiVlDpF~GSGTT~~AA~~l--gR~~Ig~El~~~y~~~a~~Rl~~  294 (320)
T d1booa_         249 EPDDLVVDIFGGSNTTGLVAERE--SRKWISFEMKPEYVAASAFRFLD  294 (320)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHGGGSC
T ss_pred             cCCCEEEecCCCCcHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHHHh
Confidence            35899999999999987444433  67999999999999988776543

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.54  E-value=0.028  Score=41.16  Aligned_cols=89  Identities=11%  Similarity=-0.010  Sum_probs=53.5

Q ss_pred             eEEEEcCCC-Ch-HHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122           78 KLVDVGTGA-GL-PGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-  154 (243)
Q Consensus        78 ~VLDiGcG~-G~-~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~-  154 (243)
                      +|+=||||. |. ++..+.+.....+|+++|.+++.++.+++    .+..  .....+......     ...|+|+... 
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~----~~~~--~~~~~~~~~~~~-----~~~dlIila~p   71 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD----LGII--DEGTTSIAKVED-----FSPDFVMLSSP   71 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH----TTSC--SEEESCGGGGGG-----TCCSEEEECSC
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHH----hhcc--hhhhhhhhhhhc-----cccccccccCC
Confidence            577788863 22 23333333345699999999986665543    3332  122222222211     3579998754 


Q ss_pred             cccHHHHHHHHccCcccCeEEEE
Q 026122          155 VAEMRILAEYCLPLVRVGGLFVA  177 (243)
Q Consensus       155 ~~~~~~~l~~~~~~LkpgG~l~~  177 (243)
                      ......+++.+.+.++++-.+.-
T Consensus        72 ~~~~~~vl~~l~~~~~~~~ii~d   94 (171)
T d2g5ca2          72 VRTFREIAKKLSYILSEDATVTD   94 (171)
T ss_dssp             HHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             chhhhhhhhhhhccccccccccc
Confidence            44578888889999988866443

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.15  E-value=0.03  Score=41.92  Aligned_cols=93  Identities=10%  Similarity=0.067  Sum_probs=59.5

Q ss_pred             CeEEEEc--CCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccc---cCCcCCCCceEEE
Q 026122           77 LKLVDVG--TGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLG---KDVSFREQYDVAV  151 (243)
Q Consensus        77 ~~VLDiG--cG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---~~~~~~~~fD~I~  151 (243)
                      .+||=.|  .|.|..++.+|+..+...|+++..+++...   +..+.++..  .++...-+++.   .. ..++.+|+|+
T Consensus        32 etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~---~l~~~~gad--~vi~~~~~~~~~~~~~-~~~~GvDvv~  105 (187)
T d1vj1a2          32 QTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCL---FLTSELGFD--AAVNYKTGNVAEQLRE-ACPGGVDVYF  105 (187)
T ss_dssp             CEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHH---HHHHHSCCS--EEEETTSSCHHHHHHH-HCTTCEEEEE
T ss_pred             CEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHh---hhhhcccce--EEeeccchhHHHHHHH-HhccCceEEE
Confidence            6788877  457889999999886667888888875332   233455654  23322222211   11 1125699999


Q ss_pred             EcCcccHHHHHHHHccCcccCeEEEEE
Q 026122          152 ARAVAEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       152 ~~~~~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                      -..-   .+.++...+.|+++|+++.+
T Consensus       106 D~vG---g~~~~~~~~~l~~~G~iv~~  129 (187)
T d1vj1a2         106 DNVG---GDISNTVISQMNENSHIILC  129 (187)
T ss_dssp             ESSC---HHHHHHHHTTEEEEEEEEEC
T ss_pred             ecCC---chhHHHHhhhccccccEEEe
Confidence            6543   34578889999999998754

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=95.12  E-value=0.028  Score=47.52  Aligned_cols=52  Identities=17%  Similarity=0.046  Sum_probs=43.6

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHcCC
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIACP--DWKVTLLESMNKRCVFLEHAVSLTQL  124 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~  124 (243)
                      ++++..++||||=.|..+..++...+  ..+|+++|+++...+..+++++.+..
T Consensus       210 l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~  263 (395)
T d2py6a1         210 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTD  263 (395)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTT
T ss_pred             cCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhccc
Confidence            45678999999999998877766544  36999999999999999999987765

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.08  E-value=0.03  Score=39.43  Aligned_cols=90  Identities=13%  Similarity=0.171  Sum_probs=54.2

Q ss_pred             eEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcC-CCCceEEEEcC
Q 026122           78 KLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSF-REQYDVAVARA  154 (243)
Q Consensus        78 ~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~-~~~fD~I~~~~  154 (243)
                      +|+=+|  .|.+|..+++..  .+..|+.+|.+++.++.+++   ..   ++.++.+|..+....... -+..|.+++..
T Consensus         2 ~IvI~G--~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~---~~---~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t   73 (132)
T d1lssa_           2 YIIIAG--IGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASA---EI---DALVINGDCTKIKTLEDAGIEDADMYIAVT   73 (132)
T ss_dssp             EEEEEC--CSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH---HC---SSEEEESCTTSHHHHHHTTTTTCSEEEECC
T ss_pred             EEEEEC--CCHHHHHHHHHHHHCCCCcceecCChhhhhhhhh---hh---hhhhccCcccchhhhhhcChhhhhhhcccC
Confidence            344444  578888888643  46799999999987765543   22   357899998774322111 15689888854


Q ss_pred             ccc-HHHHHHHHccCcccCeEE
Q 026122          155 VAE-MRILAEYCLPLVRVGGLF  175 (243)
Q Consensus       155 ~~~-~~~~l~~~~~~LkpgG~l  175 (243)
                      ..+ ...+.....+.+.+.-.+
T Consensus        74 ~~d~~N~~~~~~~k~~~~~~iI   95 (132)
T d1lssa_          74 GKEEVNLMSSLLAKSYGINKTI   95 (132)
T ss_dssp             SCHHHHHHHHHHHHHTTCCCEE
T ss_pred             CcHHHHHHHHHHHHHcCCceEE
Confidence            322 222333344456666443

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=95.03  E-value=0.0059  Score=45.47  Aligned_cols=97  Identities=8%  Similarity=-0.085  Sum_probs=57.2

Q ss_pred             CCCCCeEEEEcCCCCh-HHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEE-ccccccc---cCCcCCCCc
Q 026122           73 CNSNLKLVDVGTGAGL-PGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVR-GRAETLG---KDVSFREQY  147 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~-~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~-~d~~~~~---~~~~~~~~f  147 (243)
                      ++++++||=+|+|.+. .++.+++...+.+|+++|.+++..+.+++    +|..  .++. .+-.+..   ......+.+
T Consensus        26 vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~----~Ga~--~~i~~~~~~~~~~~~~~~~~~~G~   99 (176)
T d2jhfa2          26 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE----VGAT--ECVNPQDYKKPIQEVLTEMSNGGV   99 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCS--EEECGGGCSSCHHHHHHHHTTSCB
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHH----hCCe--eEEecCCchhHHHHHHHHHhcCCC
Confidence            4669999999997443 45566666667899999999987776654    4443  2221 1211110   000112579


Q ss_pred             eEEEEcCcccHHHHHHHHccCcccC-eEEEE
Q 026122          148 DVAVARAVAEMRILAEYCLPLVRVG-GLFVA  177 (243)
Q Consensus       148 D~I~~~~~~~~~~~l~~~~~~Lkpg-G~l~~  177 (243)
                      |+|+-..-.  ...++.+...++++ |.+++
T Consensus       100 D~vid~~G~--~~~~~~a~~~~~~~~g~~~~  128 (176)
T d2jhfa2         100 DFSFEVIGR--LDTMVTALSCCQEAYGVSVI  128 (176)
T ss_dssp             SEEEECSCC--HHHHHHHHHHBCTTTCEEEE
T ss_pred             CEEEecCCc--hhHHHHHHHHHhcCCcceEE
Confidence            998875322  34445555677776 45444

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.83  E-value=0.0073  Score=45.39  Aligned_cols=95  Identities=12%  Similarity=0.071  Sum_probs=58.1

Q ss_pred             CCeEEEEcCCCC--hHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122           76 NLKLVDVGTGAG--LPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        76 ~~~VLDiGcG~G--~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      +.+||=-|++.|  ..++.+|+.. +++|+++-.+++..+.++    ++|.+.+--...+..+.... ...+.+|+|+-.
T Consensus        32 g~~VLI~gaaGGVG~~aiQlak~~-Ga~Viat~~s~~k~~~~~----~lGa~~vi~~~~~~~~~~~~-~~~~gvD~vid~  105 (176)
T d1xa0a2          32 RGPVLVTGATGGVGSLAVSMLAKR-GYTVEASTGKAAEHDYLR----VLGAKEVLAREDVMAERIRP-LDKQRWAAAVDP  105 (176)
T ss_dssp             GCCEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCTTCHHHHH----HTTCSEEEECC----------CCSCCEEEEEEC
T ss_pred             CCEEEEEeccchHHHHHHHHHHHc-CCceEEecCchHHHHHHH----hcccceeeecchhHHHHHHH-hhccCcCEEEEc
Confidence            788998886554  4677778775 789999999988766665    45554321111111111111 113579998875


Q ss_pred             CcccHHHHHHHHccCcccCeEEEEEe
Q 026122          154 AVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       154 ~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      ...   ..++...+.|++||+++.+-
T Consensus       106 vgg---~~~~~~l~~l~~~Griv~~G  128 (176)
T d1xa0a2         106 VGG---RTLATVLSRMRYGGAVAVSG  128 (176)
T ss_dssp             STT---TTHHHHHHTEEEEEEEEECS
T ss_pred             CCc---hhHHHHHHHhCCCceEEEee
Confidence            432   23566677999999987654

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.83  E-value=0.089  Score=38.94  Aligned_cols=114  Identities=11%  Similarity=0.076  Sum_probs=66.1

Q ss_pred             eEEEEcCCC-ChHHHHHHHHCCCCEEEEE-eCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCc
Q 026122           78 KLVDVGTGA-GLPGLVLAIACPDWKVTLL-ESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  155 (243)
Q Consensus        78 ~VLDiGcG~-G~~~~~la~~~~~~~v~~v-D~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~  155 (243)
                      +|.=||||. |..-+......++.+++|+ |.+++.   ++..+++.+.....-...|++++...    ...|+|+....
T Consensus         3 ki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~ll~~----~~iD~v~I~tp   75 (184)
T d1ydwa1           3 RIGVMGCADIARKVSRAIHLAPNATISGVASRSLEK---AKAFATANNYPESTKIHGSYESLLED----PEIDALYVPLP   75 (184)
T ss_dssp             EEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHH---HHHHHHHTTCCTTCEEESSHHHHHHC----TTCCEEEECCC
T ss_pred             EEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccc---cccchhccccccceeecCcHHHhhhc----cccceeeeccc
Confidence            577789985 4332233345578899976 888753   45555666664322234567665432    46899887543


Q ss_pred             c-cHHHHHHHHccCcccCeEEEEEeCC-CcHHHHHHHHHHHHHhCCee
Q 026122          156 A-EMRILAEYCLPLVRVGGLFVAAKGH-DPQEEVKNSERAVQLMGASL  201 (243)
Q Consensus       156 ~-~~~~~l~~~~~~LkpgG~l~~~~~~-~~~~~~~~~~~~l~~~g~~~  201 (243)
                      . ...   +.+...|+.|=.+++..+. ...++..++.+..++.|..+
T Consensus        76 ~~~h~---~~~~~~l~~g~~v~~EKP~~~~~~e~~~l~~~~~~~~~~~  120 (184)
T d1ydwa1          76 TSLHV---EWAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQI  120 (184)
T ss_dssp             GGGHH---HHHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCCE
T ss_pred             chhhc---chhhhhhhccceeecccccccCHHHHHHHHHHHHhhCCEE
Confidence            2 222   2233445555455554432 45667777777777777644

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=94.15  E-value=0.015  Score=43.77  Aligned_cols=41  Identities=17%  Similarity=0.144  Sum_probs=32.4

Q ss_pred             CCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCCHHHHHHHHH
Q 026122           76 NLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEH  117 (243)
Q Consensus        76 ~~~VLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~  117 (243)
                      +.+|+=||+|. |..++..|... +++|+.+|.++..++..+.
T Consensus        29 pa~VvViGaGvaG~~Aa~~A~~l-GA~V~v~D~~~~~~~~l~~   70 (183)
T d1l7da1          29 PARVLVFGVGVAGLQAIATAKRL-GAVVMATDVRAATKEQVES   70 (183)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCSTTHHHHHH
T ss_pred             CcEEEEEcCcHHHHHHHHHHHHc-CCEEEEEeccHHHHHHHHH
Confidence            67999999994 66677777776 6899999999976555544

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=93.74  E-value=0.038  Score=41.39  Aligned_cols=102  Identities=7%  Similarity=-0.033  Sum_probs=59.5

Q ss_pred             CCCCCeEEEEcCCC---ChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEE-EccccccccC-----CcC
Q 026122           73 CNSNLKLVDVGTGA---GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIV-RGRAETLGKD-----VSF  143 (243)
Q Consensus        73 ~~~~~~VLDiGcG~---G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~-~~d~~~~~~~-----~~~  143 (243)
                      ++++.+||=+.+|+   |..++.+|+.. +++|+++-.+++..+...+.++.+|.+.+-.. ..+..++...     ...
T Consensus        26 ~~~g~~vli~~ga~g~vG~~aiqlAk~~-Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~~~~v~~~~~~~  104 (189)
T d1gu7a2          26 LTPGKDWFIQNGGTSAVGKYASQIGKLL-NFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQS  104 (189)
T ss_dssp             CCTTTCEEEESCTTSHHHHHHHHHHHHH-TCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCchHHHHHHHHHhhc-CCeEEEEEecccccchHHhhhhhccccEEEeccccchhHHHHHHHHHHhhc
Confidence            34577888874444   45667778776 67998886565555555666677776532111 1122221100     001


Q ss_pred             CCCceEEEEcCcccHHHHHHHHccCcccCeEEEEE
Q 026122          144 REQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       144 ~~~fD~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~  178 (243)
                      ...+|+|+-.. .  ...++.+.+.|+|+|+++.+
T Consensus       105 g~~vdvv~D~v-g--~~~~~~~~~~l~~~G~~v~~  136 (189)
T d1gu7a2         105 GGEAKLALNCV-G--GKSSTGIARKLNNNGLMLTY  136 (189)
T ss_dssp             TCCEEEEEESS-C--HHHHHHHHHTSCTTCEEEEC
T ss_pred             cCCceEEEECC-C--cchhhhhhhhhcCCcEEEEE
Confidence            24689988532 2  23346667899999997764

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=93.64  E-value=0.038  Score=40.82  Aligned_cols=95  Identities=14%  Similarity=0.071  Sum_probs=58.3

Q ss_pred             CCeEEEEcCC--CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122           76 NLKLVDVGTG--AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        76 ~~~VLDiGcG--~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      +.+||=-|++  .|..++.+|+.. +++|+++..+++..+.++    ++|.+.+ +...+...-.......+.+|+|+-.
T Consensus        24 ~~~VLV~gaaGgVG~~avQlAk~~-Ga~Viat~~s~~k~~~~~----~lGad~v-i~~~~~~~~~~~~~~~~gvd~vid~   97 (167)
T d1tt7a2          24 KGSVLVTGATGGVGGIAVSMLNKR-GYDVVASTGNREAADYLK----QLGASEV-ISREDVYDGTLKALSKQQWQGAVDP   97 (167)
T ss_dssp             GCCEEEESTTSHHHHHHHHHHHHH-TCCEEEEESSSSTHHHHH----HHTCSEE-EEHHHHCSSCCCSSCCCCEEEEEES
T ss_pred             CCEEEEeCCcchHHHHHHHHHHHc-CCceEEEecCHHHHHHHH----hhcccce-EeccchhchhhhcccCCCceEEEec
Confidence            5578866643  455677788775 589999999988666654    4555432 2222211111111113579998865


Q ss_pred             CcccHHHHHHHHccCcccCeEEEEEe
Q 026122          154 AVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       154 ~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      -.   ...+..+.+.|+++|+++.+-
T Consensus        98 vg---g~~~~~~~~~l~~~G~iv~~G  120 (167)
T d1tt7a2          98 VG---GKQLASLLSKIQYGGSVAVSG  120 (167)
T ss_dssp             CC---THHHHHHHTTEEEEEEEEECC
T ss_pred             Cc---HHHHHHHHHHhccCceEEEee
Confidence            32   235567888999999987654

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.62  E-value=0.22  Score=39.22  Aligned_cols=103  Identities=18%  Similarity=0.136  Sum_probs=69.4

Q ss_pred             CCeE-EEEcCCCChHHHHHHHHC---CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC-------cCC
Q 026122           76 NLKL-VDVGTGAGLPGLVLAIAC---PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------SFR  144 (243)
Q Consensus        76 ~~~V-LDiGcG~G~~~~~la~~~---~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-------~~~  144 (243)
                      |++| |=-|+++| +|..+|+.+   .+.+|+.++.+++.++.+.+.++..+. ++.++.+|+.+...-.       ...
T Consensus         2 g~rVAlVTGas~G-IG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dvs~~~sv~~~~~~~~~~~   79 (275)
T d1wmaa1           2 GIHVALVTGGNKG-IGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGL-SPRFHQLDIDDLQSIRALRDFLRKEY   79 (275)
T ss_dssp             CCCEEEESSCSSH-HHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTC-CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCH-HHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEEecCCHHHHHHHHHHHHHhc
Confidence            6677 55566665 444454432   367999999999998888887777664 4888999987743210       001


Q ss_pred             CCceEEEEcCcc------------c-----------HHHHHHHHccCcccCeEEEEEeC
Q 026122          145 EQYDVAVARAVA------------E-----------MRILAEYCLPLVRVGGLFVAAKG  180 (243)
Q Consensus       145 ~~fD~I~~~~~~------------~-----------~~~~l~~~~~~LkpgG~l~~~~~  180 (243)
                      ++.|+++.|+-.            +           ...+.+.+.+.++++|+++.+.+
T Consensus        80 g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS  138 (275)
T d1wmaa1          80 GGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSS  138 (275)
T ss_dssp             SSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             CCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc
Confidence            579999998510            1           23456677888899999876653

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=93.50  E-value=0.049  Score=39.99  Aligned_cols=99  Identities=7%  Similarity=-0.088  Sum_probs=57.9

Q ss_pred             CCCCCeEEEEcCCCCh-HHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccc----cCCcCCCCc
Q 026122           73 CNSNLKLVDVGTGAGL-PGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLG----KDVSFREQY  147 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~-~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----~~~~~~~~f  147 (243)
                      ++++++|+=+|||.+. .+..+++...+.+|+++|.+++.++.++    ++|.+  .+++.+-++..    ........+
T Consensus        26 ~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~----~~GAd--~~in~~~~~~~~~~~~~~~~~~G~   99 (175)
T d1cdoa2          26 VEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAK----VFGAT--DFVNPNDHSEPISQVLSKMTNGGV   99 (175)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH----HTTCC--EEECGGGCSSCHHHHHHHHHTSCB
T ss_pred             CCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHH----HcCCc--EEEcCCCcchhHHHHHHhhccCCc
Confidence            4568999999999854 4555666666779999999998766554    56653  33332111100    000012469


Q ss_pred             eEEEEcCcccHHHHHHHHccCcccCeEEEEEe
Q 026122          148 DVAVARAVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       148 D~I~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      |+|+-..-.  ...++.+...+++||..++..
T Consensus       100 d~vid~~G~--~~~~~~a~~~~~~g~~~~~~~  129 (175)
T d1cdoa2         100 DFSLECVGN--VGVMRNALESCLKGWGVSVLV  129 (175)
T ss_dssp             SEEEECSCC--HHHHHHHHHTBCTTTCEEEEC
T ss_pred             ceeeeecCC--HHHHHHHHHHhhCCCcceeEE
Confidence            999875432  333455555666664444433

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=93.20  E-value=0.13  Score=37.56  Aligned_cols=115  Identities=12%  Similarity=0.090  Sum_probs=63.9

Q ss_pred             CeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc-CCCCEE------EEEccccccccCCcCCCCceE
Q 026122           77 LKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT-QLLNVQ------IVRGRAETLGKDVSFREQYDV  149 (243)
Q Consensus        77 ~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~~~v~------~~~~d~~~~~~~~~~~~~fD~  149 (243)
                      ++|.=||+|.-..++.......+.+|+.+|.+++.++..++.-... .....+      ....|..+..      ...|+
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~------~~aD~   75 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAV------KDADV   75 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHH------TTCSE
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHh------cCCCE
Confidence            4677788876544333333334689999999998766554432110 000111      1112222211      46899


Q ss_pred             EEEcC-cccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCC
Q 026122          150 AVARA-VAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGA  199 (243)
Q Consensus       150 I~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~  199 (243)
                      |+... ......+++++.+.|+++-.++...+......  .+...+...+.
T Consensus        76 iii~v~~~~~~~~~~~i~~~l~~~~~iv~~~g~~~~~~--~~~~~~~~~~~  124 (184)
T d1bg6a2          76 ILIVVPAIHHASIAANIASYISEGQLIILNPGATGGAL--EFRKILRENGA  124 (184)
T ss_dssp             EEECSCGGGHHHHHHHHGGGCCTTCEEEESSCCSSHHH--HHHHHHHHTTC
T ss_pred             EEEEEchhHHHHHHHHhhhccCCCCEEEEeCCCCccHH--HHHHHHHHhcC
Confidence            99743 34578899999999999987665444333221  23344555554

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=92.93  E-value=0.28  Score=35.26  Aligned_cols=85  Identities=16%  Similarity=0.111  Sum_probs=52.9

Q ss_pred             eEEEEcCCCChHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC-
Q 026122           78 KLVDVGTGAGLPGLVLAIA--CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-  154 (243)
Q Consensus        78 ~VLDiGcG~G~~~~~la~~--~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~-  154 (243)
                      +|.=||+  |.+|..+|+.  ..+.+|+++|.+++.++.++    +.+..+  ....+.+.+       ...|+|+... 
T Consensus         2 kI~iIG~--G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~----~~~~~~--~~~~~~~~~-------~~~DiIilavp   66 (165)
T d2f1ka2           2 KIGVVGL--GLIGASLAGDLRRRGHYLIGVSRQQSTCEKAV----ERQLVD--EAGQDLSLL-------QTAKIIFLCTP   66 (165)
T ss_dssp             EEEEECC--SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH----HTTSCS--EEESCGGGG-------TTCSEEEECSC
T ss_pred             EEEEEee--cHHHHHHHHHHHHCCCEEEEEECCchHHHHHH----Hhhccc--eeeeecccc-------cccccccccCc
Confidence            4555666  5555444432  24789999999987655443    334321  222233322       4689998744 


Q ss_pred             cccHHHHHHHHccCcccCeEEEE
Q 026122          155 VAEMRILAEYCLPLVRVGGLFVA  177 (243)
Q Consensus       155 ~~~~~~~l~~~~~~LkpgG~l~~  177 (243)
                      ....+++++++...++++-.++-
T Consensus        67 ~~~~~~vl~~l~~~l~~~~iv~~   89 (165)
T d2f1ka2          67 IQLILPTLEKLIPHLSPTAIVTD   89 (165)
T ss_dssp             HHHHHHHHHHHGGGSCTTCEEEE
T ss_pred             Hhhhhhhhhhhhhhcccccceee
Confidence            44678899999999988876543

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=92.67  E-value=0.18  Score=37.02  Aligned_cols=117  Identities=10%  Similarity=0.083  Sum_probs=67.8

Q ss_pred             EEEEcCCCChHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC--
Q 026122           79 LVDVGTGAGLPGLVLAIA--CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA--  154 (243)
Q Consensus        79 VLDiGcG~G~~~~~la~~--~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~--  154 (243)
                      |-=||+  |.++..+|+.  ..+.+|++.|++++.++...+...+   ...........+....   -...|.++...  
T Consensus         5 Ig~IGl--G~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~---~~~~~~ii~~~~~   76 (176)
T d2pgda2           5 IALIGL--AVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAK---GTKVLGAHSLEEMVSK---LKKPRRIILLVKA   76 (176)
T ss_dssp             EEEECC--SHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTT---TSSCEECSSHHHHHHH---BCSSCEEEECSCT
T ss_pred             EEEEeE--hHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhccc---cccccchhhhhhhhhh---hcccceEEEecCc
Confidence            334555  5666666653  2468999999999876654432111   1111111122222111   14567777643  


Q ss_pred             cccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEE
Q 026122          155 VAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQL  204 (243)
Q Consensus       155 ~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~  204 (243)
                      ......+.+.+...+++|-. ++..+.....+..++.+.+.+.|...++-
T Consensus        77 ~~~v~~v~~~l~~~~~~g~i-iid~sT~~~~~~~~~~~~~~~~g~~~lda  125 (176)
T d2pgda2          77 GQAVDNFIEKLVPLLDIGDI-IIDGGNSEYRDTMRRCRDLKDKGILFVGS  125 (176)
T ss_dssp             THHHHHHHHHHHHHCCTTCE-EEECSCCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             hHHHHHHHHHHHhccccCcE-EEecCcchhHHHHHHHHHHHhcCCceecc
Confidence            23456677788888888765 55455555666677778888888877653

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.36  E-value=0.28  Score=38.27  Aligned_cols=78  Identities=15%  Similarity=0.049  Sum_probs=56.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccC-------CcCCC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKD-------VSFRE  145 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~-------~~~~~  145 (243)
                      ++.+|=.|+++|. +..+|+.+  .+++|+.+|.+++.++.+.+.++..+.+ ++.++.+|+.+-..-       ....+
T Consensus        10 ~Kv~lITGas~GI-G~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~g   88 (257)
T d1xg5a_          10 DRLALVTGASGGI-GAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHS   88 (257)
T ss_dssp             TCEEEEESTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            7899999988875 34455433  5789999999999988888877777654 588889998763211       00015


Q ss_pred             CceEEEEcC
Q 026122          146 QYDVAVARA  154 (243)
Q Consensus       146 ~fD~I~~~~  154 (243)
                      +.|+++.++
T Consensus        89 ~iD~lVnnA   97 (257)
T d1xg5a_          89 GVDICINNA   97 (257)
T ss_dssp             CCSEEEECC
T ss_pred             CCCEEEecc
Confidence            799999864

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=92.29  E-value=0.16  Score=35.26  Aligned_cols=89  Identities=9%  Similarity=-0.024  Sum_probs=57.4

Q ss_pred             CCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCc-CCCCceEEEEcCccc-HHHH
Q 026122           84 TGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-FREQYDVAVARAVAE-MRIL  161 (243)
Q Consensus        84 cG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~-~~~~fD~I~~~~~~~-~~~~  161 (243)
                      ||.|..+..+++...+..|+.+|.+++..+.++.    .   ++.++.+|..+...... .-++.+.+++....+ ...+
T Consensus         6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~----~---~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~d~~n~~   78 (129)
T d2fy8a1           6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVLR----S---GANFVHGDPTRVSDLEKANVRGARAVIVNLESDSETIH   78 (129)
T ss_dssp             ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHH----T---TCEEEESCTTSHHHHHHTTCTTCSEEEECCSSHHHHHH
T ss_pred             ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHh----c---CccccccccCCHHHHHHhhhhcCcEEEEeccchhhhHH
Confidence            5778889899988777789999999987654432    2   46889999876331100 015688888754332 2222


Q ss_pred             HHHHccCcccCeEEEEEe
Q 026122          162 AEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       162 l~~~~~~LkpgG~l~~~~  179 (243)
                      +-...+.+.|...++...
T Consensus        79 ~~~~~r~~~~~~~iia~~   96 (129)
T d2fy8a1          79 CILGIRKIDESVRIIAEA   96 (129)
T ss_dssp             HHHHHHHHCSSSCEEEEC
T ss_pred             HHHHHHHHCCCceEEEEE
Confidence            334455677887766644

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=91.77  E-value=0.59  Score=33.93  Aligned_cols=115  Identities=16%  Similarity=0.205  Sum_probs=64.9

Q ss_pred             CCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCC-CCEEEEEccccccccCCcCCCCceEEEE--cCcccHH
Q 026122           85 GAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAVA--RAVAEMR  159 (243)
Q Consensus        85 G~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~fD~I~~--~~~~~~~  159 (243)
                      |.|..+..+|+..  .+.+|++.|.+++..+...+.-..... .+.+. ..+...+....   ...+.+..  .......
T Consensus         8 GlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~   83 (178)
T d1pgja2           8 GLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKA-FETMEAFAASL---KKPRKALILVQAGAATD   83 (178)
T ss_dssp             CCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEE-CSCHHHHHHHB---CSSCEEEECCCCSHHHH
T ss_pred             eehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccccchhh-hhhhhHHHHhc---ccceEEEEeecCcchhh
Confidence            5566666666543  468999999999866554443221111 12222 22222222111   22233332  2334456


Q ss_pred             HHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEE
Q 026122          160 ILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQL  204 (243)
Q Consensus       160 ~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~  204 (243)
                      ..+..+...+++|..+ +..+....+...++.+.+...|+...+.
T Consensus        84 ~~~~~~~~~~~~~~ii-i~~st~~~~~~~~~~~~l~~~~~~~lda  127 (178)
T d1pgja2          84 STIEQLKKVFEKGDIL-VDTGNAHFKDQGRRAQQLEAAGLRFLGM  127 (178)
T ss_dssp             HHHHHHHHHCCTTCEE-EECCCCCHHHHHHHHHHHHTTTCEEEEE
T ss_pred             hhhhhhhhhcccccee-cccCccchhHHHHHHHHHhhcceeEecc
Confidence            6777888888888764 4455555566677777788888876654

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=91.36  E-value=0.64  Score=36.28  Aligned_cols=102  Identities=14%  Similarity=0.159  Sum_probs=64.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHH--CCCCEEEEEeCC-HHHHHHHHHHHHHcCCCCEEEEEccccccccC-------CcCCC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIA--CPDWKVTLLESM-NKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD-------VSFRE  145 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~--~~~~~v~~vD~s-~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-------~~~~~  145 (243)
                      ++++|=.|+++|. +..+|+.  ..+++|+.+|.+ ++.++.+.+.+++.+. ++.++.+|+.+...-       ....+
T Consensus        18 gK~~lITGas~GI-G~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~-~~~~~~~D~~~~~~v~~~~~~~~~~~g   95 (272)
T d1g0oa_          18 GKVALVTGAGRGI-GREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGS-DAACVKANVGVVEDIVRMFEEAVKIFG   95 (272)
T ss_dssp             TCEEEETTTTSHH-HHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCCHH-HHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhCC-ceeeEeCCCCCHHHHHHHHHHHHHHhC
Confidence            7899999998775 3344433  247899999987 5556666666666664 488888888763210       00015


Q ss_pred             CceEEEEcCc-----------------------ccHHHHHHHHccCcccCeEEEEEe
Q 026122          146 QYDVAVARAV-----------------------AEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       146 ~fD~I~~~~~-----------------------~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      ..|+++.++.                       ...-.+.+.+.+.++.+|..+++.
T Consensus        96 ~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~  152 (272)
T d1g0oa_          96 KLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMG  152 (272)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred             CCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccccc
Confidence            7899998630                       013344556667777777766654

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=91.19  E-value=0.68  Score=38.00  Aligned_cols=69  Identities=20%  Similarity=0.165  Sum_probs=41.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC-------CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCce
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC-------PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYD  148 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~-------~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD  148 (243)
                      ..+|+|+|+|+|.++..+....       ...+++.+|.|+...+.-++...  ...++.++ .++++.+      ...-
T Consensus        80 ~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~--~~~~i~w~-~~~~~~~------~~~g  150 (365)
T d1zkda1          80 TLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLA--GIRNIHWH-DSFEDVP------EGPA  150 (365)
T ss_dssp             SEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHST--TCSSEEEE-SSGGGSC------CSSE
T ss_pred             cceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhc--ccccceec-cChhhcc------cCCe
Confidence            4589999999999876554431       24579999999975443333322  23345544 3444432      1235


Q ss_pred             EEEEc
Q 026122          149 VAVAR  153 (243)
Q Consensus       149 ~I~~~  153 (243)
                      +|++|
T Consensus       151 ~iiaN  155 (365)
T d1zkda1         151 VILAN  155 (365)
T ss_dssp             EEEEE
T ss_pred             EEEec
Confidence            66665

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=91.10  E-value=0.31  Score=33.63  Aligned_cols=88  Identities=10%  Similarity=-0.050  Sum_probs=50.2

Q ss_pred             CCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcC-CCCceEEEEcCccc-HH
Q 026122           84 TGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSF-REQYDVAVARAVAE-MR  159 (243)
Q Consensus        84 cG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~-~~~fD~I~~~~~~~-~~  159 (243)
                      ||.|.+|..+++..  .+.+|+.+|.+++.++.++    ..   ....+.+|..+....... -...|.+++....+ -.
T Consensus         6 iG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~----~~---~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~~~~~~   78 (134)
T d2hmva1           6 IGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYA----SY---ATHAVIANATEENELLSLGIRNFEYVIVAIGANIQA   78 (134)
T ss_dssp             ECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTT----TT---CSEEEECCTTCTTHHHHHTGGGCSEEEECCCSCHHH
T ss_pred             ECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHH----Hh---CCcceeeecccchhhhccCCccccEEEEEcCchHHh
Confidence            45678887777653  4689999999998766543    22   245677887664322110 13578777644332 22


Q ss_pred             HHHHHHccCcccCeEEEEE
Q 026122          160 ILAEYCLPLVRVGGLFVAA  178 (243)
Q Consensus       160 ~~l~~~~~~LkpgG~l~~~  178 (243)
                      .++-...+.+.+...++..
T Consensus        79 ~~~~~~~~~~~~~~~iiar   97 (134)
T d2hmva1          79 STLTTLLLKELDIPNIWVK   97 (134)
T ss_dssp             HHHHHHHHHHTTCSEEEEE
T ss_pred             HHHHHHHHHHcCCCcEEee
Confidence            2333333334455665553

>d1vkra_ c.44.2.1 (A:) PTS system mannitol-specific EIICBA component {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Phosphotyrosine protein phosphatases I-like
superfamily: PTS system IIB component-like
family: PTS system, Lactose/Cellobiose specific IIB subunit
domain: PTS system mannitol-specific EIICBA component
species: Escherichia coli [TaxId: 562]

Probab=91.10  E-value=1.3  Score=29.09  Aligned_cols=87  Identities=8%  Similarity=0.129  Sum_probs=55.8

Q ss_pred             eEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCccc
Q 026122           78 KLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAVAE  157 (243)
Q Consensus        78 ~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~~  157 (243)
                      +||=+ ||+|.-+-.+.+.                 .+++.++++|++.+.+.+.++.+.+      +..|+|++.  .+
T Consensus         5 kIl~v-Cg~G~GSS~m~~~-----------------~l~~~lk~~gi~~i~v~~~~i~~~~------~d~DlIvt~--~~   58 (97)
T d1vkra_           5 KIIVA-CDAGMGSSAMGAG-----------------VLRKKIQDAGLSQISVTNSAINNLP------PDVDLVITH--RD   58 (97)
T ss_dssp             EEEEC-CSSSSHHHHHHHH-----------------HHHHHHHHTTCTTSEEEECCTTCCC------TTCSEEEEE--HH
T ss_pred             EEEEE-CCCCcCHHHHHHH-----------------HHHHHHHHcCCCceEEEEeEhhhCC------CCCCEEEEc--HH
Confidence            45544 8888876454432                 3677788899877888888887763      458999985  22


Q ss_pred             HHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHH
Q 026122          158 MRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAV  194 (243)
Q Consensus       158 ~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l  194 (243)
                      +..   .+... .|+..++...+.-...++.++.+.+
T Consensus        59 l~~---~~~~~-~~~~~vi~v~n~l~~~ei~~l~e~i   91 (97)
T d1vkra_          59 LTE---RAMRQ-VPQAQHISLTNFLDSGLYTSLTERL   91 (97)
T ss_dssp             HHH---HHHHH-CTTSEEEEESCTTCHHHHHHHHHHH
T ss_pred             HHH---HHHhh-CCCCeEEEEEecCChHHHHHHHHHH
Confidence            222   22222 3566777777766666666665544

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.87  E-value=0.56  Score=36.24  Aligned_cols=77  Identities=12%  Similarity=-0.027  Sum_probs=55.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC-------cCCCC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIA--CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------SFREQ  146 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~--~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-------~~~~~  146 (243)
                      |+.+|=-|+++|.- ..+|+.  ..+++|+.+|.+++.++.+.+.++..+- ++..+.+|+.+...-.       ...+.
T Consensus         7 Gkv~lITGas~GIG-~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~~-~~~~~~~Dvs~~~~v~~~~~~i~~~~g~   84 (244)
T d1yb1a_           7 GEIVLITGAGHGIG-RLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGA-KVHTFVVDCSNREDIYSSAKKVKAEIGD   84 (244)
T ss_dssp             TCEEEEETTTSHHH-HHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHTCC
T ss_pred             CCEEEEeCCCcHHH-HHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence            78888889988863 334432  2478999999999999888887777654 5888999987743210       01257


Q ss_pred             ceEEEEcC
Q 026122          147 YDVAVARA  154 (243)
Q Consensus       147 fD~I~~~~  154 (243)
                      .|+++.++
T Consensus        85 idilinna   92 (244)
T d1yb1a_          85 VSILVNNA   92 (244)
T ss_dssp             CSEEEECC
T ss_pred             CceeEeec
Confidence            99999864

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=90.76  E-value=0.37  Score=35.50  Aligned_cols=93  Identities=13%  Similarity=0.162  Sum_probs=56.8

Q ss_pred             CCeEEEEcCC--CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122           76 NLKLVDVGTG--AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        76 ~~~VLDiGcG--~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      +.+||=.|+.  .|..++.+|+.. +++|+++..+++..+.++    .+|.+  .++.-+-.+.... .....+|.|+-.
T Consensus        32 ~~~vlV~gasGGVG~~aiQlAk~~-Ga~Via~~~~~~k~~~~~----~lGad--~vi~~~~~~~~~~-l~~~~~~~vvD~  103 (177)
T d1o89a2          32 DGEIVVTGASGGVGSTAVALLHKL-GYQVVAVSGRESTHEYLK----SLGAS--RVLPRDEFAESRP-LEKQVWAGAIDT  103 (177)
T ss_dssp             GCEEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCGGGHHHHH----HHTEE--EEEEGGGSSSCCS-SCCCCEEEEEES
T ss_pred             CCcEEEEEccccchHHHHHHHHHc-CCCeEEEecchhHHHHHH----hhccc--cccccccHHHHHH-HHhhcCCeeEEE
Confidence            4577755532  344667778775 689999999998766554    44543  2333222222111 112458887643


Q ss_pred             CcccHHHHHHHHccCcccCeEEEEEe
Q 026122          154 AVAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       154 ~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                       +.  ...+....+.|+++|+++.+-
T Consensus       104 -Vg--g~~~~~~l~~l~~~Griv~~G  126 (177)
T d1o89a2         104 -VG--DKVLAKVLAQMNYGGCVAACG  126 (177)
T ss_dssp             -SC--HHHHHHHHHTEEEEEEEEECC
T ss_pred             -cc--hHHHHHHHHHhccccceEeec
Confidence             33  345778888999999988753

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=90.52  E-value=0.53  Score=36.63  Aligned_cols=77  Identities=16%  Similarity=0.083  Sum_probs=53.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccC-------CcCCCC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIA--CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD-------VSFREQ  146 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~--~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-------~~~~~~  146 (243)
                      ++++|=.|.++|. +..+|+.  ..+++|+.+|.+++.++.+.+.++..+. ++..+.+|+.+...-       ....+.
T Consensus         5 gK~alITGas~GI-G~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   82 (260)
T d1zema1           5 GKVCLVTGAGGNI-GLATALRLAEEGTAIALLDMNREALEKAEASVREKGV-EARSYVCDVTSEEAVIGTVDSVVRDFGK   82 (260)
T ss_dssp             TCEEEEETTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTS-CEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            7889988987775 3344433  2478999999999998888887776664 488888888653210       000157


Q ss_pred             ceEEEEcC
Q 026122          147 YDVAVARA  154 (243)
Q Consensus       147 fD~I~~~~  154 (243)
                      .|+++.++
T Consensus        83 iDilVnna   90 (260)
T d1zema1          83 IDFLFNNA   90 (260)
T ss_dssp             CCEEEECC
T ss_pred             CCeehhhh
Confidence            99999763

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=90.47  E-value=1.6  Score=30.81  Aligned_cols=113  Identities=16%  Similarity=0.164  Sum_probs=59.3

Q ss_pred             CCeEEEEcCCC-Ch-HHHHHHHHCCCCEEEEEeCCHHHHH-HHHHHHHHcC-CCCEEEEEccccccccCCcCCCCceEEE
Q 026122           76 NLKLVDVGTGA-GL-PGLVLAIACPDWKVTLLESMNKRCV-FLEHAVSLTQ-LLNVQIVRGRAETLGKDVSFREQYDVAV  151 (243)
Q Consensus        76 ~~~VLDiGcG~-G~-~~~~la~~~~~~~v~~vD~s~~~~~-~a~~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~fD~I~  151 (243)
                      ..+|.=||+|. |. ++..++...-..+++.+|++++..+ .+........ .....+..+|.+++       ...|+|+
T Consensus         5 ~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~~~~-------~~adivv   77 (146)
T d1ez4a1           5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSDC-------KDADLVV   77 (146)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGGG-------TTCSEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccHHHh-------ccccEEE
Confidence            56888899753 32 2233343332358999999987543 1211111111 12355667777665       3479888


Q ss_pred             EcCc-----------------ccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCe
Q 026122          152 ARAV-----------------AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGAS  200 (243)
Q Consensus       152 ~~~~-----------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~  200 (243)
                      ..+-                 .-..++.+.+.+ -.|.+.+++..++  -..+..+  .++..||.
T Consensus        78 itag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~-~~p~aivivvtNP--vdv~t~~--~~k~sg~p  138 (146)
T d1ez4a1          78 ITAGAPQKPGESRLDLVNKNLNILSSIVKPVVD-SGFDGIFLVAANP--VDILTYA--TWKFSGFP  138 (146)
T ss_dssp             ECCCC----------CHHHHHHHHHHHHHHHHH-TTCCSEEEECSSS--HHHHHHH--HHHHHCCC
T ss_pred             EecccccCCCCCHHHHHHHHHHHHHHHHHHHhh-cCCCcEEEEeCCc--cHHHHHH--HHHHHCcC
Confidence            7431                 013344444443 2588887775543  3333333  23455664

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=90.03  E-value=0.45  Score=35.16  Aligned_cols=76  Identities=11%  Similarity=0.016  Sum_probs=46.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEc
Q 026122           76 NLKLVDVGTGAGLPGLVLAIA--CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~--~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      +++||=.|++.|. +..+++.  ..+++|+.++.+++.++.+.+......  ++.+...|+.+.......-+..|+++.+
T Consensus        23 gK~vlItGasgGI-G~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~iDilin~   99 (191)
T d1luaa1          23 GKKAVVLAGTGPV-GMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRF--KVNVTAAETADDASRAEAVKGAHFVFTA   99 (191)
T ss_dssp             TCEEEEETTTSHH-HHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHH--TCCCEEEECCSHHHHHHHTTTCSEEEEC
T ss_pred             CCEEEEECCCHHH-HHHHHHHHHhhccchhhcccchHHHHHHHHHHHhcc--chhhhhhhcccHHHHHHHhcCcCeeeec
Confidence            8899999987765 3334432  246899999999988877766665432  1233444443321110112578999987


Q ss_pred             C
Q 026122          154 A  154 (243)
Q Consensus       154 ~  154 (243)
                      +
T Consensus       100 A  100 (191)
T d1luaa1         100 G  100 (191)
T ss_dssp             C
T ss_pred             C
Confidence            5

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=89.93  E-value=2.1  Score=30.16  Aligned_cols=113  Identities=18%  Similarity=0.187  Sum_probs=61.4

Q ss_pred             CCeEEEEcCCC-Ch-HHHHHHHHCCCCEEEEEeCCHHHHH-HHHHHHHHcCC--CCEEEEEccccccccCCcCCCCceEE
Q 026122           76 NLKLVDVGTGA-GL-PGLVLAIACPDWKVTLLESMNKRCV-FLEHAVSLTQL--LNVQIVRGRAETLGKDVSFREQYDVA  150 (243)
Q Consensus        76 ~~~VLDiGcG~-G~-~~~~la~~~~~~~v~~vD~s~~~~~-~a~~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~fD~I  150 (243)
                      +.+|-=||+|. |. .+..++...-.-++..+|++++.++ .+.........  .++.+..+|.+++       ...|+|
T Consensus         6 ~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~l-------~daDvv   78 (148)
T d1ldna1           6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDC-------RDADLV   78 (148)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGT-------TTCSEE
T ss_pred             CCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHHHh-------ccceeE
Confidence            66888899743 22 2333343333458999999987643 22222111111  2466667777665       347999


Q ss_pred             EEcCc-----------------ccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCe
Q 026122          151 VARAV-----------------AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGAS  200 (243)
Q Consensus       151 ~~~~~-----------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~  200 (243)
                      +..+-                 .-..++.+.+.+. .|+|.+++..++  -..+..+.  ++..||.
T Consensus        79 vitag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~~ivvtNP--vd~~t~~~--~k~sg~p  140 (148)
T d1ldna1          79 VICAGANQKPGETRLDLVDKNIAIFRSIVESVMAS-GFQGLFLVATNP--VDILTYAT--WKFSGLP  140 (148)
T ss_dssp             EECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHH-TCCSEEEECSSS--HHHHHHHH--HHHHTCC
T ss_pred             EEecccccccCcchhHHHHHHHHHHHHHHHHHHhh-CCCceEEEecCc--cHHHHHHH--HHHHCcC
Confidence            87420                 1134444554443 588987775543  33444332  3456764

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=89.91  E-value=0.46  Score=37.24  Aligned_cols=78  Identities=21%  Similarity=0.170  Sum_probs=55.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHcCCC--CEEEEEccccccccC-------CcCC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIA--CPDWKVTLLESMNKRCVFLEHAVSLTQLL--NVQIVRGRAETLGKD-------VSFR  144 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~--~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~~~~-------~~~~  144 (243)
                      ++++|=.|+++|. +..+|+.  ..+++|+.+|.+++.++.+.+.+++.+..  ++..+.+|+.+...-       ....
T Consensus         5 gK~alVTGas~GI-G~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~   83 (272)
T d1xkqa_           5 NKTVIITGSSNGI-GRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQF   83 (272)
T ss_dssp             TCEEEETTCSSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCcCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence            7888888987764 3344443  24789999999999998888888877653  488999998763211       0001


Q ss_pred             CCceEEEEcC
Q 026122          145 EQYDVAVARA  154 (243)
Q Consensus       145 ~~fD~I~~~~  154 (243)
                      ++.|+++.++
T Consensus        84 g~iDilvnnA   93 (272)
T d1xkqa_          84 GKIDVLVNNA   93 (272)
T ss_dssp             SCCCEEEECC
T ss_pred             CCceEEEeCC
Confidence            5789999863

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=89.78  E-value=1.2  Score=34.13  Aligned_cols=101  Identities=17%  Similarity=0.095  Sum_probs=63.8

Q ss_pred             CCeEEEEcCCC--ChHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC-------cCC
Q 026122           76 NLKLVDVGTGA--GLPGLVLAIA--CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------SFR  144 (243)
Q Consensus        76 ~~~VLDiGcG~--G~~~~~la~~--~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-------~~~  144 (243)
                      ++++|=.|+++  | ++..+|+.  ..+++|+..|.+++..+.+++.....+  +..++.+|+.+...-.       ...
T Consensus         8 gK~alITGas~~~G-IG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~~~   84 (256)
T d1ulua_           8 GKKALVMGVTNQRS-LGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALG--GALLFRADVTQDEELDALFAGVKEAF   84 (256)
T ss_dssp             TCEEEEESCCCSSS-HHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTT--CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCch-HHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHhhhccC--cccccccccCCHHHHHHHHHHHHHhc
Confidence            88999999765  5 34444433  247899999999887776666655544  3567788876532100       001


Q ss_pred             CCceEEEEcCc-----------c----------------cHHHHHHHHccCcccCeEEEEEe
Q 026122          145 EQYDVAVARAV-----------A----------------EMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       145 ~~fD~I~~~~~-----------~----------------~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      ++.|+++.++.           .                ..-.+.+.+.+.++.+|.++.+.
T Consensus        85 g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~is  146 (256)
T d1ulua_          85 GGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLT  146 (256)
T ss_dssp             SSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEE
T ss_pred             CCceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccCCEEEEEe
Confidence            57899887530           0                02234455667888899988765

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=89.40  E-value=0.81  Score=35.51  Aligned_cols=77  Identities=14%  Similarity=0.035  Sum_probs=53.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccC--------CcCCC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIA--CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD--------VSFRE  145 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~--~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~--------~~~~~  145 (243)
                      ++++|=.|+..|. +..+|+.  ..+++|+.+|.+++.++.+.+..+..+. ++.++.+|+.+....        ....+
T Consensus         6 gK~alITGas~GI-G~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~~-~~~~~~~D~s~~~~~~~~~~~~~~~~~g   83 (258)
T d1ae1a_           6 GTTALVTGGSKGI-GYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGL-NVEGSVCDLLSRTERDKLMQTVAHVFDG   83 (258)
T ss_dssp             TCEEEEESCSSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHTTS
T ss_pred             CCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEeecCCHHHHHHHHHHHHHHhCC
Confidence            8899999997664 4444433  2478999999999988888777777664 477888888664311        11124


Q ss_pred             CceEEEEcC
Q 026122          146 QYDVAVARA  154 (243)
Q Consensus       146 ~fD~I~~~~  154 (243)
                      ..|+++.++
T Consensus        84 ~idilinna   92 (258)
T d1ae1a_          84 KLNILVNNA   92 (258)
T ss_dssp             CCCEEEECC
T ss_pred             CcEEEeccc
Confidence            688888763

>d2oo3a1 c.66.1.59 (A:9-279) Uncharacterized protein LPG1296 {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: LPG1296-like
domain: Uncharacterized protein LPG1296
species: Legionella pneumophila [TaxId: 446]

Probab=89.22  E-value=2.7  Score=32.83  Aligned_cols=118  Identities=10%  Similarity=-0.001  Sum_probs=80.8

Q ss_pred             CChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccC-CcCCCCceEEEEcC----cccHHH
Q 026122           86 AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD-VSFREQYDVAVARA----VAEMRI  160 (243)
Q Consensus        86 ~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~~~fD~I~~~~----~~~~~~  160 (243)
                      +|.+.+.....++.-+.+.+|..++-.+..+++..  +-.++++.+.|..+.... ....++--+|+..-    ..++..
T Consensus        91 PGSP~ia~~llR~~Drl~l~ELHp~e~~~L~~~~~--~~~~~~v~~~DG~~~l~allPP~~rRgLVLIDPpYE~k~ey~~  168 (271)
T d2oo3a1          91 PGSPYFAINQLRSQDRLYLCELHPTEYNFLLKLPH--FNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSYERKEEYKE  168 (271)
T ss_dssp             ECHHHHHHHHSCTTSEEEEECCSHHHHHHHTTSCC--TTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCCCSTTHHHH
T ss_pred             CCCHHHHHHhCCCCCceEEeecCHHHHHHHHHHhc--cCCCceEEcCchHHHHHhhCCCCCCceEEEecCCcCCHHHHHH
Confidence            34455455555677899999999986666554432  224699999997653210 00014456788753    346777


Q ss_pred             HHHHHccCcc--cCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeEEE
Q 026122          161 LAEYCLPLVR--VGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLC  205 (243)
Q Consensus       161 ~l~~~~~~Lk--pgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~  205 (243)
                      +.+.+...++  |.|.++++.+--.......+.+.+.+.|.+...++
T Consensus       169 v~~~l~~a~kr~~~g~~~iWYPi~~~~~~~~~~~~l~~~~~k~l~~E  215 (271)
T d2oo3a1         169 IPYAIKNAYSKFSTGLYCVWYPVVNKAWTEQFLRKMREISSKSVRIE  215 (271)
T ss_dssp             HHHHHHHHHHHCTTSEEEEEEEESSHHHHHHHHHHHHHHCSSEEEEE
T ss_pred             HHHHHHHHHHhCCCceEEEEeeccCcHHHHHHHHHHHhcCccceeEE
Confidence            7777777776  78999999987778888899999999998766543

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=88.93  E-value=0.62  Score=36.51  Aligned_cols=78  Identities=14%  Similarity=0.126  Sum_probs=55.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHcCCC--CEEEEEccccccccCC-------cCC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIA--CPDWKVTLLESMNKRCVFLEHAVSLTQLL--NVQIVRGRAETLGKDV-------SFR  144 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~--~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~~~~~-------~~~  144 (243)
                      ++++|=-|+++|. +..+|+.  ..+++|+.+|.+++.++.+.+.++..+..  ++..+.+|+.+...-.       ...
T Consensus         4 gK~alITGas~GI-G~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   82 (274)
T d1xhla_           4 GKSVIITGSSNGI-GRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAKF   82 (274)
T ss_dssp             TCEEEETTCSSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHHc
Confidence            7888989988775 4444443  24789999999999998888888877653  5889999987642110       001


Q ss_pred             CCceEEEEcC
Q 026122          145 EQYDVAVARA  154 (243)
Q Consensus       145 ~~fD~I~~~~  154 (243)
                      ++.|+++.++
T Consensus        83 G~iDilVnnA   92 (274)
T d1xhla_          83 GKIDILVNNA   92 (274)
T ss_dssp             SCCCEEEECC
T ss_pred             CCceEEEeec
Confidence            5789999863

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=88.87  E-value=0.81  Score=35.52  Aligned_cols=77  Identities=12%  Similarity=0.032  Sum_probs=53.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccC--------CcCCC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD--------VSFRE  145 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~--------~~~~~  145 (243)
                      ++++|=-|+++|. +..+|+.+  .+++|+.+|.+++.++.+.+.++..+. ++.++.+|+.+....        .....
T Consensus         8 GK~alITGas~GI-G~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~~~~   85 (259)
T d2ae2a_           8 GCTALVTGGSRGI-GYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGF-KVEASVCDLSSRSERQELMNTVANHFHG   85 (259)
T ss_dssp             TCEEEEESCSSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-EEEEEECCTTCHHHHHHHHHHHHHHTTT
T ss_pred             CCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEeeCCCHHHHHHHHHHHHHHhCC
Confidence            8899999988775 44444432  468999999999988877777776654 477888888652210        01124


Q ss_pred             CceEEEEcC
Q 026122          146 QYDVAVARA  154 (243)
Q Consensus       146 ~fD~I~~~~  154 (243)
                      +.|+++.++
T Consensus        86 ~idilvnnA   94 (259)
T d2ae2a_          86 KLNILVNNA   94 (259)
T ss_dssp             CCCEEEECC
T ss_pred             CceEEEECC
Confidence            689999874

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.68  E-value=2.9  Score=30.63  Aligned_cols=100  Identities=12%  Similarity=0.117  Sum_probs=60.3

Q ss_pred             CeEEEEcCCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc-------CCC---------------CEEEEEccc
Q 026122           77 LKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT-------QLL---------------NVQIVRGRA  134 (243)
Q Consensus        77 ~~VLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~~~---------------~v~~~~~d~  134 (243)
                      .+|-=||+|+=.-+++......+.+|+.+|.+++.++.+++.+++.       +..               ++.+. .|.
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~-~d~   83 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATS-TDA   83 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEE-SCH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhcccc-chh
Confidence            4788888864222333333345789999999999988887765431       211               12222 222


Q ss_pred             cccccCCcCCCCceEEEEcCccc---HHHHHHHHccCcccCeEEEEEeCCCc
Q 026122          135 ETLGKDVSFREQYDVAVARAVAE---MRILAEYCLPLVRVGGLFVAAKGHDP  183 (243)
Q Consensus       135 ~~~~~~~~~~~~fD~I~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~  183 (243)
                      .+.      -...|+|+-....+   -.++++++.+.++++-.+.-..+.-.
T Consensus        84 ~~a------~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~  129 (192)
T d1f0ya2          84 ASV------VHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQ  129 (192)
T ss_dssp             HHH------TTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSC
T ss_pred             Hhh------hcccceehhhcccchhHHHHHHHHHhhhcccCceeeccCcccc
Confidence            221      14579998765433   47888899999988876554334333

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=88.50  E-value=0.9  Score=35.17  Aligned_cols=77  Identities=17%  Similarity=0.126  Sum_probs=54.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccC-------CcCCCC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIA--CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD-------VSFREQ  146 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~--~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-------~~~~~~  146 (243)
                      ++++|=-|++.|. +..+|+.  ..+++|+.+|.+++.++.+.+.++..+. ++.++.+|+.+...-       ...-++
T Consensus        11 gK~alITGas~GI-G~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g~-~~~~~~~Dvs~~~~~~~~~~~~~~~~g~   88 (255)
T d1fmca_          11 GKCAIITGAGAGI-GKEIAITFATAGASVVVSDINADAANHVVDEIQQLGG-QAFACRCDITSEQELSALADFAISKLGK   88 (255)
T ss_dssp             TCEEEETTTTSHH-HHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCEEEEeCCCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            7888888877765 4455543  3578999999999998888887777664 578889998763210       000157


Q ss_pred             ceEEEEcC
Q 026122          147 YDVAVARA  154 (243)
Q Consensus       147 fD~I~~~~  154 (243)
                      .|+++.++
T Consensus        89 iDilvnnA   96 (255)
T d1fmca_          89 VDILVNNA   96 (255)
T ss_dssp             CCEEEECC
T ss_pred             CCEeeeCC
Confidence            99999864

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.93  E-value=0.89  Score=35.27  Aligned_cols=77  Identities=9%  Similarity=-0.031  Sum_probs=53.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccC--------CcCCC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIA--CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD--------VSFRE  145 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~--~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~--------~~~~~  145 (243)
                      ++++|=.|+++|. +..+|+.  ..+++|+.+|.+++.++.+.+.++..+. ++..+.+|+.+....        ..+.+
T Consensus         8 gK~alVTGas~GI-G~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~~~g   85 (259)
T d1xq1a_           8 AKTVLVTGGTKGI-GHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGF-QVTGSVCDASLRPEREKLMQTVSSMFGG   85 (259)
T ss_dssp             TCEEEETTTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHHHTT
T ss_pred             CCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-ceEEEeccCCCHHHHHHHHHHHHHHhCC
Confidence            7899999988775 4444433  2478999999999988877777766554 588888888653210        01125


Q ss_pred             CceEEEEcC
Q 026122          146 QYDVAVARA  154 (243)
Q Consensus       146 ~fD~I~~~~  154 (243)
                      ..|+++.++
T Consensus        86 ~idilvnnA   94 (259)
T d1xq1a_          86 KLDILINNL   94 (259)
T ss_dssp             CCSEEEEEC
T ss_pred             Ccccccccc
Confidence            689999864

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=87.87  E-value=1  Score=34.67  Aligned_cols=77  Identities=17%  Similarity=0.143  Sum_probs=54.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccC-------CcCCCC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD-------VSFREQ  146 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-------~~~~~~  146 (243)
                      ++.+|=.|++.| ++..+|+.+  .+++|+.+|.+++.++.+.+.++..+. ++..+.+|+.+...-       ....++
T Consensus        10 nKvalITGas~G-IG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g~-~~~~~~~Dvt~~~~v~~~~~~~~~~~g~   87 (251)
T d2c07a1          10 NKVALVTGAGRG-IGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGY-ESSGYAGDVSKKEEISEVINKILTEHKN   87 (251)
T ss_dssp             SCEEEEESTTSH-HHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTC-CEEEEECCTTCHHHHHHHHHHHHHHCSC
T ss_pred             CCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence            677888887766 555666543  468999999999988888777776664 488889998763210       001257


Q ss_pred             ceEEEEcC
Q 026122          147 YDVAVARA  154 (243)
Q Consensus       147 fD~I~~~~  154 (243)
                      .|+++.++
T Consensus        88 iDilvnna   95 (251)
T d2c07a1          88 VDILVNNA   95 (251)
T ss_dssp             CCEEEECC
T ss_pred             ceeeeecc
Confidence            99999864

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=87.75  E-value=2.5  Score=33.48  Aligned_cols=80  Identities=9%  Similarity=-0.097  Sum_probs=53.3

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEccccccccCCcCCCCceE
Q 026122           73 CNSNLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDV  149 (243)
Q Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~  149 (243)
                      +++|++||=.|+ +|.+|..+++..  .+.+|+++..+....+..++........ ...++.+|+.+.......-...|.
T Consensus         8 ~~~gk~VlVTG~-sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~   86 (342)
T d1y1pa1           8 LPEGSLVLVTGA-NGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAG   86 (342)
T ss_dssp             SCTTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSE
T ss_pred             CCCcCEEEEECC-CCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccchh
Confidence            456889998886 499998887643  3689999998887766665554444333 356677888764332211245788


Q ss_pred             EEEc
Q 026122          150 AVAR  153 (243)
Q Consensus       150 I~~~  153 (243)
                      |+..
T Consensus        87 v~~~   90 (342)
T d1y1pa1          87 VAHI   90 (342)
T ss_dssp             EEEC
T ss_pred             hhhh
Confidence            8864

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=87.75  E-value=0.84  Score=35.42  Aligned_cols=78  Identities=19%  Similarity=0.132  Sum_probs=54.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHcCCC--CEEEEEccccccccCC-------cCC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIA--CPDWKVTLLESMNKRCVFLEHAVSLTQLL--NVQIVRGRAETLGKDV-------SFR  144 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~--~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~~~~~-------~~~  144 (243)
                      ++.+|=.|++.|. +..+|+.  ..+++|+.+|.+++.++.+.+.++..+..  ++.++.+|+.+...-.       ...
T Consensus         5 gKvalVTGas~GI-G~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~   83 (264)
T d1spxa_           5 EKVAIITGSSNGI-GRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGKF   83 (264)
T ss_dssp             TCEEEETTTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCcCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence            7788888888775 4444443  25789999999999998888888777653  5889999986532110       001


Q ss_pred             CCceEEEEcC
Q 026122          145 EQYDVAVARA  154 (243)
Q Consensus       145 ~~fD~I~~~~  154 (243)
                      ++.|+++.++
T Consensus        84 g~iDilvnnA   93 (264)
T d1spxa_          84 GKLDILVNNA   93 (264)
T ss_dssp             SCCCEEEECC
T ss_pred             CCCCEeeccc
Confidence            5789998763

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=87.57  E-value=0.96  Score=34.91  Aligned_cols=77  Identities=13%  Similarity=0.056  Sum_probs=51.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHH-HHcCCCCEEEEEccccccccC-------CcCCC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIA--CPDWKVTLLESMNKRCVFLEHAV-SLTQLLNVQIVRGRAETLGKD-------VSFRE  145 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~--~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~v~~~~~d~~~~~~~-------~~~~~  145 (243)
                      ++++|=-|++.|. +..+|+.  ..+++|+.+|.+++.++.+.+.+ ++.+. ++..+.+|+.+...-       ...-+
T Consensus         5 gK~~lITGas~GI-G~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~~g   82 (251)
T d1vl8a_           5 GRVALVTGGSRGL-GFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGV-ETMAFRCDVSNYEEVKKLLEAVKEKFG   82 (251)
T ss_dssp             TCEEEEETTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCC-CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCC-cEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            7899999988775 4444433  24789999999998776555443 44454 478888998763210       00015


Q ss_pred             CceEEEEcC
Q 026122          146 QYDVAVARA  154 (243)
Q Consensus       146 ~fD~I~~~~  154 (243)
                      +.|+++.++
T Consensus        83 ~iDiLVnnA   91 (251)
T d1vl8a_          83 KLDTVVNAA   91 (251)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            799999874

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=87.53  E-value=0.4  Score=36.60  Aligned_cols=73  Identities=11%  Similarity=-0.055  Sum_probs=48.8

Q ss_pred             EEEEccccccccCCcCCCCceEEEEcC--------------c----ccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHH
Q 026122          128 QIVRGRAETLGKDVSFREQYDVAVARA--------------V----AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKN  189 (243)
Q Consensus       128 ~~~~~d~~~~~~~~~~~~~fD~I~~~~--------------~----~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~  189 (243)
                      +++++|..++-... .++++|+|+..-              .    ......++++.++|+|||.+++....   .....
T Consensus         6 ~i~~gDcle~l~~l-pd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~~~---~~~~~   81 (256)
T d1g60a_           6 KIHQMNCFDFLDQV-ENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNTP---FNCAF   81 (256)
T ss_dssp             SEEECCHHHHHHHS-CTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEECH---HHHHH
T ss_pred             EEEeccHHHHHhhC-cCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccccCc---hhhhh
Confidence            47888887742211 137899999852              0    11456788999999999998876553   33445


Q ss_pred             HHHHHHHhCCeeeEE
Q 026122          190 SERAVQLMGASLLQL  204 (243)
Q Consensus       190 ~~~~l~~~g~~~~~~  204 (243)
                      +...+...|+.....
T Consensus        82 ~~~~~~~~g~~~~~~   96 (256)
T d1g60a_          82 ICQYLVSKGMIFQNW   96 (256)
T ss_dssp             HHHHHHHTTCEEEEE
T ss_pred             hhhhhhcccceeeee
Confidence            566677889876553

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=87.50  E-value=0.31  Score=40.22  Aligned_cols=23  Identities=17%  Similarity=0.158  Sum_probs=19.5

Q ss_pred             cHHHHHHHHccCcccCeEEEEEe
Q 026122          157 EMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       157 ~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      ++..+++.=.+-|+|||++++..
T Consensus       187 D~~~FL~~Ra~ELv~GG~mvl~~  209 (359)
T d1m6ex_         187 DHALFLRCRAQEVVPGGRMVLTI  209 (359)
T ss_dssp             HHHHHHHHHHHHBCTTCEEEEEE
T ss_pred             HHHHHHHHHHHHhcCCcEEEEEE
Confidence            57788888888999999998765

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.47  E-value=1.7  Score=30.86  Aligned_cols=109  Identities=14%  Similarity=0.103  Sum_probs=61.9

Q ss_pred             eEEEEcCCCChHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCc
Q 026122           78 KLVDVGTGAGLPGLVLAIA--CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  155 (243)
Q Consensus        78 ~VLDiGcG~G~~~~~la~~--~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~  155 (243)
                      +|-=||+  |..+..+|+.  ..+.+|++.|.+++..+.+.    ..+.    ....+..+..      ...|+|+..-.
T Consensus         3 kIg~IGl--G~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~----~~~~----~~~~~~~e~~------~~~diii~~v~   66 (162)
T d3cuma2           3 QIAFIGL--GHMGAPMATNLLKAGYLLNVFDLVQSAVDGLV----AAGA----SAARSARDAV------QGADVVISMLP   66 (162)
T ss_dssp             EEEEECC--STTHHHHHHHHHHTTCEEEEECSSHHHHHHHH----HTTC----EECSSHHHHH------TSCSEEEECCS
T ss_pred             EEEEEEE--HHHHHHHHHHHHHCCCeEEEEECchhhhhhhh----hhhc----cccchhhhhc------cccCeeeeccc
Confidence            3444555  5555445542  24689999999987554433    2221    2223333332      45788776432


Q ss_pred             --ccHHHHHHH---HccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCeeeE
Q 026122          156 --AEMRILAEY---CLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQ  203 (243)
Q Consensus       156 --~~~~~~l~~---~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~  203 (243)
                        .....++..   +...+++|- +++-.+....+...++.+.++..|...++
T Consensus        67 ~~~~~~~v~~~~~~~~~~l~~g~-iiid~st~~p~~~~~~~~~~~~~gi~~~d  118 (162)
T d3cuma2          67 ASQHVEGLYLDDDGLLAHIAPGT-LVLECSTIAPTSARKIHAAARERGLAMLD  118 (162)
T ss_dssp             CHHHHHHHHHSTTCHHHHSCTTC-EEEECSCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred             chhhHHHHHhccccccccCCCCC-EEEECCCCCHHHHHHHHHHHHHCCCcEEe
Confidence              223344332   344566664 45555666667777888888898886665

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=87.37  E-value=1.2  Score=34.26  Aligned_cols=77  Identities=14%  Similarity=0.060  Sum_probs=53.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccC-------CcCCCC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD-------VSFREQ  146 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-------~~~~~~  146 (243)
                      ++.+|=-|++.|. +..+|+.+  .+++|+.+|.+++.++.+.+.++..+. ++.++.+|+.+...-       ...-++
T Consensus         2 gKValITGas~GI-G~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~-~~~~~~~Dvs~~~~v~~~~~~~~~~~g~   79 (257)
T d2rhca1           2 SEVALVTGATSGI-GLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGV-EADGRTCDVRSVPEIEALVAAVVERYGP   79 (257)
T ss_dssp             CCEEEEESCSSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHTCS
T ss_pred             CCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeecCCHHHHHHHHHHHHHHhCC
Confidence            5566777877665 44555432  578999999999998888887777665 488899998764211       001157


Q ss_pred             ceEEEEcC
Q 026122          147 YDVAVARA  154 (243)
Q Consensus       147 fD~I~~~~  154 (243)
                      .|+++.++
T Consensus        80 iDilVnnA   87 (257)
T d2rhca1          80 VDVLVNNA   87 (257)
T ss_dssp             CSEEEECC
T ss_pred             CCEEEecc
Confidence            99999864

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=87.34  E-value=0.98  Score=29.57  Aligned_cols=68  Identities=19%  Similarity=0.257  Sum_probs=39.8

Q ss_pred             CCCCeEEEEc-CCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEE
Q 026122           74 NSNLKLVDVG-TGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        74 ~~~~~VLDiG-cG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      ....+|.=|| ||+|.-+++......+.+|+|.|....  ... +.....|   +.+..+...+..      ...|+|+.
T Consensus         6 ~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~--~~~-~~L~~~G---i~v~~g~~~~~i------~~~d~vV~   73 (96)
T d1p3da1           6 RRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADG--VVT-QRLAQAG---AKIYIGHAEEHI------EGASVVVV   73 (96)
T ss_dssp             TTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCS--HHH-HHHHHTT---CEEEESCCGGGG------TTCSEEEE
T ss_pred             hhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCC--hhh-hHHHHCC---CeEEECCccccC------CCCCEEEE
Confidence            3366788887 568887654444445789999998643  122 2333445   445555444421      34787775


Q ss_pred             c
Q 026122          153 R  153 (243)
Q Consensus       153 ~  153 (243)
                      .
T Consensus        74 S   74 (96)
T d1p3da1          74 S   74 (96)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=87.27  E-value=0.77  Score=32.91  Aligned_cols=110  Identities=16%  Similarity=0.105  Sum_probs=63.9

Q ss_pred             eEEEEcCCC-ChH-HHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcCc
Q 026122           78 KLVDVGTGA-GLP-GLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV  155 (243)
Q Consensus        78 ~VLDiGcG~-G~~-~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~  155 (243)
                      +|.=||||. |.. -+......++..+..+|.+++.   ++...+..+...   ...|++++..     ...|+|+....
T Consensus         3 rvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~---~~~~~~~~~~~~---~~~~~~~ll~-----~~iD~V~I~tp   71 (167)
T d1xeaa1           3 KIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKV---LGTLATRYRVSA---TCTDYRDVLQ-----YGVDAVMIHAA   71 (167)
T ss_dssp             EEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHH---HHHHHHHTTCCC---CCSSTTGGGG-----GCCSEEEECSC
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHH---HHHHHHhccccc---ccccHHHhcc-----cccceeccccc
Confidence            677789984 311 1223334567888999999864   444455555432   2346666532     35898886543


Q ss_pred             c-cHHHHHHHHccCcccCeEEEEEeC-CCcHHHHHHHHHHHHHhCCee
Q 026122          156 A-EMRILAEYCLPLVRVGGLFVAAKG-HDPQEEVKNSERAVQLMGASL  201 (243)
Q Consensus       156 ~-~~~~~l~~~~~~LkpgG~l~~~~~-~~~~~~~~~~~~~l~~~g~~~  201 (243)
                      . ...++..   ..++.|=.+++..+ ....++..++.+..++.|..+
T Consensus        72 ~~~H~~~~~---~al~~gk~V~~EKP~~~~~~e~~~l~~~a~~~~~~~  116 (167)
T d1xeaa1          72 TDVHSTLAA---FFLHLGIPTFVDKPLAASAQECENLYELAEKHHQPL  116 (167)
T ss_dssp             GGGHHHHHH---HHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTTCCE
T ss_pred             ccccccccc---cccccccccccCCCCcCCHHHHHHHHHHHHHcCCEE
Confidence            2 2333333   34444444556554 345677788888888888644

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=87.02  E-value=1  Score=35.23  Aligned_cols=77  Identities=10%  Similarity=0.044  Sum_probs=51.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHH-HcCCCCEEEEEccccccccC-------CcCCC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVS-LTQLLNVQIVRGRAETLGKD-------VSFRE  145 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~-~~~~~~v~~~~~d~~~~~~~-------~~~~~  145 (243)
                      ++++|=.|+..| +|..+|+.+  .+++|+.+|.+++.++.+.+... ..+ .++.++.+|+.+....       ....+
T Consensus        25 gK~alITGas~G-IG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~g-~~~~~~~~D~~~~~~v~~~~~~~~~~~g  102 (294)
T d1w6ua_          25 GKVAFITGGGTG-LGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTG-NKVHAIQCDVRDPDMVQNTVSELIKVAG  102 (294)
T ss_dssp             TCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHS-SCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhcC-CceEEEEecccChHHHHHHhhhhhhhcc
Confidence            789999998876 444555432  47899999999988766554443 333 3577888888663311       00125


Q ss_pred             CceEEEEcC
Q 026122          146 QYDVAVARA  154 (243)
Q Consensus       146 ~fD~I~~~~  154 (243)
                      ..|+++.++
T Consensus       103 ~iDilvnnA  111 (294)
T d1w6ua_         103 HPNIVINNA  111 (294)
T ss_dssp             SCSEEEECC
T ss_pred             ccchhhhhh
Confidence            789999864

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=86.82  E-value=1.3  Score=34.20  Aligned_cols=78  Identities=18%  Similarity=0.100  Sum_probs=53.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCEEEEEccccccccCC-------cCCC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIA--CPDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDV-------SFRE  145 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~--~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~-------~~~~  145 (243)
                      ++++|=-|+++|. +..+|+.  ..+++|+.+|.+++.++.+.+.....+. .++..+.+|+.+...-.       ...+
T Consensus         4 gK~alITGas~GI-G~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~G   82 (258)
T d1iy8a_           4 DRVVLITGGGSGL-GRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERFG   82 (258)
T ss_dssp             TCEEEEETTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHhC
Confidence            7888889988875 3333332  2478999999999988877776665543 35888899987632110       0015


Q ss_pred             CceEEEEcC
Q 026122          146 QYDVAVARA  154 (243)
Q Consensus       146 ~fD~I~~~~  154 (243)
                      +.|+++.|+
T Consensus        83 ~iDiLVnnA   91 (258)
T d1iy8a_          83 RIDGFFNNA   91 (258)
T ss_dssp             CCSEEEECC
T ss_pred             CCCEEEECC
Confidence            799999864

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=86.41  E-value=4.3  Score=29.12  Aligned_cols=73  Identities=14%  Similarity=0.046  Sum_probs=40.6

Q ss_pred             CCeEEEEcCCCChHHH---HHHHHCCC---CEEEEEeCCHHHHHHHHH----HHHHcCCCCEEEEEccccccccCCcCCC
Q 026122           76 NLKLVDVGTGAGLPGL---VLAIACPD---WKVTLLESMNKRCVFLEH----AVSLTQLLNVQIVRGRAETLGKDVSFRE  145 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~---~la~~~~~---~~v~~vD~s~~~~~~a~~----~~~~~~~~~v~~~~~d~~~~~~~~~~~~  145 (243)
                      .-+|.=||+|+.....   .+....+.   .+++.+|++++.++....    .....+.+--.....|..+..      .
T Consensus         3 ~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal------~   76 (167)
T d1u8xx1           3 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAF------T   76 (167)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHH------S
T ss_pred             CceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhcc------C
Confidence            4578889999754321   22222333   489999999988753323    333344432223333443321      3


Q ss_pred             CceEEEEcC
Q 026122          146 QYDVAVARA  154 (243)
Q Consensus       146 ~fD~I~~~~  154 (243)
                      ..|+|+..+
T Consensus        77 ~AD~Vvita   85 (167)
T d1u8xx1          77 DVDFVMAHI   85 (167)
T ss_dssp             SCSEEEECC
T ss_pred             CCCEEEECC
Confidence            579999853

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=86.01  E-value=0.53  Score=30.58  Aligned_cols=57  Identities=12%  Similarity=0.041  Sum_probs=34.2

Q ss_pred             CCCChHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEc-cccccccCCcCCCCceEEEEc
Q 026122           84 TGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRG-RAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        84 cG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      ||+|.-+++......+.+|+|.|..+..   ..+..++.|.+   +..+ +...+       ...|+|+..
T Consensus        10 gG~GMs~LA~~L~~~G~~VsGSD~~~~~---~t~~L~~~Gi~---i~~gh~~~~i-------~~~d~vV~S   67 (89)
T d1j6ua1          10 GGIGMSAVALHEFSNGNDVYGSNIEETE---RTAYLRKLGIP---IFVPHSADNW-------YDPDLVIKT   67 (89)
T ss_dssp             TSHHHHHHHHHHHHTTCEEEEECSSCCH---HHHHHHHTTCC---EESSCCTTSC-------CCCSEEEEC
T ss_pred             CHHHHHHHHHHHHhCCCeEEEEeCCCCh---hHHHHHHCCCe---EEeeeccccc-------CCCCEEEEe
Confidence            5677776555545568999999988632   22246666653   4333 22222       347888764

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.27  E-value=1.3  Score=34.43  Aligned_cols=78  Identities=12%  Similarity=0.087  Sum_probs=52.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccC-------CcCCCC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD-------VSFREQ  146 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-------~~~~~~  146 (243)
                      |+++|=.|+++|. |..+|+.+  .+++|+.++.+++.++.+.+.........+.....|..+....       ....+.
T Consensus        14 GK~alITGassGI-G~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~g~   92 (269)
T d1xu9a_          14 GKKVIVTGASKGI-GREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMGG   92 (269)
T ss_dssp             TCEEEESSCSSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHHTS
T ss_pred             CCEEEEeCCCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhhhhcccchhhhhhhhhHHHHHHHHHHHHHHhCC
Confidence            8899999999885 44455432  4789999999999888776665554444577777776542211       000146


Q ss_pred             ceEEEEcC
Q 026122          147 YDVAVARA  154 (243)
Q Consensus       147 fD~I~~~~  154 (243)
                      .|+++.++
T Consensus        93 ~~~li~na  100 (269)
T d1xu9a_          93 LDMLILNH  100 (269)
T ss_dssp             CSEEEECC
T ss_pred             cccccccc
Confidence            88888753

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=85.15  E-value=1.1  Score=34.87  Aligned_cols=76  Identities=11%  Similarity=0.043  Sum_probs=49.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC-------cCCCC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIA--CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------SFREQ  146 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~--~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-------~~~~~  146 (243)
                      ++++|=.|+++|. +..+|+.  ..+++|+.+|.+++.++.+.+.+...  ..+.++.+|+.+...-.       ...++
T Consensus         6 gKvalITGas~GI-G~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   82 (268)
T d2bgka1           6 DKVAIITGGAGGI-GETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSP--DVISFVHCDVTKDEDVRNLVDTTIAKHGK   82 (268)
T ss_dssp             TCEEEEESTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCT--TTEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCC--CceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            8899999988775 4455543  24789999999998766554444322  24778888886632100       00157


Q ss_pred             ceEEEEcC
Q 026122          147 YDVAVARA  154 (243)
Q Consensus       147 fD~I~~~~  154 (243)
                      .|+++.++
T Consensus        83 iD~lVnnA   90 (268)
T d2bgka1          83 LDIMFGNV   90 (268)
T ss_dssp             CCEEEECC
T ss_pred             cceecccc
Confidence            89999863

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=84.73  E-value=0.44  Score=35.26  Aligned_cols=37  Identities=22%  Similarity=0.363  Sum_probs=26.4

Q ss_pred             eEEEEcCCCChHHHHHHHHC-CCCEEEEEeCCHHHHHHHH
Q 026122           78 KLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLE  116 (243)
Q Consensus        78 ~VLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~  116 (243)
                      +|.=|  |.|.+|+.+|... .+.+|+|+|++++.++..+
T Consensus         2 kI~Vi--GlG~vGl~~a~~~a~g~~V~g~Din~~~v~~l~   39 (196)
T d1dlja2           2 KIAVA--GSGYVGLSLGVLLSLQNEVTIVDILPSKVDKIN   39 (196)
T ss_dssp             EEEEE--CCSHHHHHHHHHHTTTSEEEEECSCHHHHHHHH
T ss_pred             EEEEE--CCChhHHHHHHHHHCCCcEEEEECCHHHHHHHh
Confidence            34445  5677777776543 3679999999999887665

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=84.04  E-value=2.1  Score=32.75  Aligned_cols=74  Identities=15%  Similarity=0.193  Sum_probs=51.1

Q ss_pred             EEEEcCCCChHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccC-------CcCCCCceE
Q 026122           79 LVDVGTGAGLPGLVLAIA--CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD-------VSFREQYDV  149 (243)
Q Consensus        79 VLDiGcG~G~~~~~la~~--~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-------~~~~~~fD~  149 (243)
                      +|=-|++.|. +..+|+.  ..+++|+.+|.+++.++.+.+.++..+. ++..+.+|+.+...-       ...-++.|+
T Consensus         4 alITGas~GI-G~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDi   81 (255)
T d1gega_           4 ALVTGAGQGI-GKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGG-HAVAVKVDVSDRDQVFAAVEQARKTLGGFDV   81 (255)
T ss_dssp             EEEETTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHHTTCCCE
T ss_pred             EEEcCCccHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeeCCCHHHHHHHHHHHHHHhCCccE
Confidence            4667877664 4445543  2478999999999998888887777664 588889998763211       000157999


Q ss_pred             EEEcC
Q 026122          150 AVARA  154 (243)
Q Consensus       150 I~~~~  154 (243)
                      ++.++
T Consensus        82 lVnnA   86 (255)
T d1gega_          82 IVNNA   86 (255)
T ss_dssp             EEECC
T ss_pred             EEecc
Confidence            99864

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=83.62  E-value=3.8  Score=30.59  Aligned_cols=115  Identities=10%  Similarity=0.066  Sum_probs=64.8

Q ss_pred             CeEEEEcCCCChHH--HHHHHHCCCCEEEE-EeCCHHHHHHHHHHHHHcCCCCEE-EEEccccccccCCcCCCCceEEEE
Q 026122           77 LKLVDVGTGAGLPG--LVLAIACPDWKVTL-LESMNKRCVFLEHAVSLTQLLNVQ-IVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        77 ~~VLDiGcG~G~~~--~~la~~~~~~~v~~-vD~s~~~~~~a~~~~~~~~~~~v~-~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      -+|-=||||.=...  +...+..++.++++ +|.+++.   ++..+++.+++... ....|+.++...    ...|+|+.
T Consensus        34 iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~---a~~~~~~~~i~~~~~~~~~d~~ell~~----~~iD~V~I  106 (221)
T d1h6da1          34 FGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEK---AKIVAAEYGVDPRKIYDYSNFDKIAKD----PKIDAVYI  106 (221)
T ss_dssp             EEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHH---HHHHHHHTTCCGGGEECSSSGGGGGGC----TTCCEEEE
T ss_pred             EEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHH---HHHHHHhhccccccccccCchhhhccc----ccceeeee
Confidence            47888999733211  11222345678875 5999864   45566667765322 223566665432    56899987


Q ss_pred             cCcc-cHHHHHHHHccCcccCeEEEEEeC-CCcHHHHHHHHHHHHHhCCee
Q 026122          153 RAVA-EMRILAEYCLPLVRVGGLFVAAKG-HDPQEEVKNSERAVQLMGASL  201 (243)
Q Consensus       153 ~~~~-~~~~~l~~~~~~LkpgG~l~~~~~-~~~~~~~~~~~~~l~~~g~~~  201 (243)
                      .... ...++   +.+.|+.|=.+++..+ ....+++.++.+..++.|..+
T Consensus       107 ~tp~~~H~~~---~~~al~~gk~v~~EKPla~~~~e~~~l~~~a~~~~~~~  154 (221)
T d1h6da1         107 ILPNSLHAEF---AIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAANKKL  154 (221)
T ss_dssp             CSCGGGHHHH---HHHHHHTTCEEEECSSCCSSHHHHHHHHHHHHHHTCCE
T ss_pred             ccchhhhhhH---HHHhhhcchhhhcCCCccCCHHHHHHHHHHHHhcCCcE
Confidence            5433 22222   2233444445555443 345677777777777777544

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.52  E-value=1.6  Score=33.47  Aligned_cols=78  Identities=17%  Similarity=0.107  Sum_probs=52.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHc-CCCCEEEEEccccccccCC-------cCCC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLT-QLLNVQIVRGRAETLGKDV-------SFRE  145 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~-~~~~v~~~~~d~~~~~~~~-------~~~~  145 (243)
                      |+++|=-|+++|. +..+|+.+  .+++|+.+|.+++.++.+.+.+... +-.++.++.+|+.+...-.       ..-+
T Consensus         3 GKvalITGas~GI-G~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G   81 (254)
T d2gdza1           3 GKVALVTGAAQGI-GRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFG   81 (254)
T ss_dssp             TCEEEEETTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence            7888988987765 44555433  5789999999998877666655433 2235888999987642110       0015


Q ss_pred             CceEEEEcC
Q 026122          146 QYDVAVARA  154 (243)
Q Consensus       146 ~fD~I~~~~  154 (243)
                      +.|+++.++
T Consensus        82 ~iDilVnnA   90 (254)
T d2gdza1          82 RLDILVNNA   90 (254)
T ss_dssp             CCCEEEECC
T ss_pred             CcCeecccc
Confidence            799999875

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=83.43  E-value=6.7  Score=29.40  Aligned_cols=71  Identities=11%  Similarity=0.111  Sum_probs=44.5

Q ss_pred             CCeEEEEcCCC--ChHHH----HHHHHCCCCEEEE-EeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCce
Q 026122           76 NLKLVDVGTGA--GLPGL----VLAIACPDWKVTL-LESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYD  148 (243)
Q Consensus        76 ~~~VLDiGcG~--G~~~~----~la~~~~~~~v~~-vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD  148 (243)
                      ..+|-=||||.  |..+.    .+....++.+++| +|.+++.   +++.+++++...... ..+.+++...    ...|
T Consensus        16 ~irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~---~~~~~~~~~~~~~~~-~~~~~~l~~~----~~iD   87 (237)
T d2nvwa1          16 PIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKS---SLQTIEQLQLKHATG-FDSLESFAQY----KDID   87 (237)
T ss_dssp             CEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHH---HHHHHHHTTCTTCEE-ESCHHHHHHC----TTCS
T ss_pred             CeEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHH---HHHHHHhccccccee-ecchhhcccc----cccc
Confidence            56899999997  33332    1222346788886 6998864   555666777665543 3466665332    4689


Q ss_pred             EEEEcC
Q 026122          149 VAVARA  154 (243)
Q Consensus       149 ~I~~~~  154 (243)
                      +|+...
T Consensus        88 ~V~i~t   93 (237)
T d2nvwa1          88 MIVVSV   93 (237)
T ss_dssp             EEEECS
T ss_pred             eeeccC
Confidence            888754

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=83.22  E-value=6  Score=28.11  Aligned_cols=114  Identities=10%  Similarity=0.093  Sum_probs=59.2

Q ss_pred             CCeEEEEcCCC-ChH-HHHHHHHCCCCEEEEEeCCHHHHH-HHHHHHHHc--CCCCEEEEEccccccccCCcCCCCceEE
Q 026122           76 NLKLVDVGTGA-GLP-GLVLAIACPDWKVTLLESMNKRCV-FLEHAVSLT--QLLNVQIVRGRAETLGKDVSFREQYDVA  150 (243)
Q Consensus        76 ~~~VLDiGcG~-G~~-~~~la~~~~~~~v~~vD~s~~~~~-~a~~~~~~~--~~~~v~~~~~d~~~~~~~~~~~~~fD~I  150 (243)
                      ..+|-=||+|. |.. +..++...-..++..+|++++..+ .+.......  .........+|.+++       ...|+|
T Consensus        20 ~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~~-------~~adiV   92 (160)
T d1i0za1          20 NNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVT-------ANSKIV   92 (160)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGGGG-------TTCSEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchhhc-------ccccEE
Confidence            56899999754 332 223333323358999999976542 222222211  112244455666654       457888


Q ss_pred             EEcCc-----------------ccHHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCee
Q 026122          151 VARAV-----------------AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASL  201 (243)
Q Consensus       151 ~~~~~-----------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~~  201 (243)
                      +..+-                 .-..++...+.+. .|+|.+++..++  -..+..+  .++..||..
T Consensus        93 VitAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~-~p~aiiivvtNP--vDv~t~~--~~k~sglp~  155 (160)
T d1i0za1          93 VVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKY-SPDCIIIVVSNP--VDILTYV--TWKLSGLPK  155 (160)
T ss_dssp             EECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTCEEEECSSS--HHHHHHH--HHHHHCCCG
T ss_pred             EEecCCccccCcchHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeCCc--hHHHHHH--HHHHHCcCc
Confidence            87430                 0134444444443 588998876654  2333333  234557643

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=83.17  E-value=1.2  Score=31.22  Aligned_cols=98  Identities=8%  Similarity=-0.018  Sum_probs=55.2

Q ss_pred             CeEEEEcCCCChHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC-cCCCCceEEEEc
Q 026122           77 LKLVDVGTGAGLPGLVLAIA--CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-SFREQYDVAVAR  153 (243)
Q Consensus        77 ~~VLDiGcG~G~~~~~la~~--~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-~~~~~fD~I~~~  153 (243)
                      .+|+=+|+  |..+..+++.  ..+.+|+.||.+++......+...   ..++.++.+|..+..... ..-+..|.|++.
T Consensus         4 nHiII~G~--g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~---~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~   78 (153)
T d1id1a_           4 DHFIVCGH--SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRL---GDNADVIPGDSNDSSVLKKAGIDRCRAILAL   78 (153)
T ss_dssp             SCEEEECC--SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHH---CTTCEEEESCTTSHHHHHHHTTTTCSEEEEC
T ss_pred             CEEEEECC--CHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhh---cCCcEEEEccCcchHHHHHhccccCCEEEEc
Confidence            35666655  5666666653  246789999999864332222222   235789999987743210 001568988875


Q ss_pred             CcccH-HHHHHHHccCcccCeEEEEEe
Q 026122          154 AVAEM-RILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       154 ~~~~~-~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      ...+. ....-...+.+.|.-.++...
T Consensus        79 ~~~d~~n~~~~~~~r~~~~~~~iia~~  105 (153)
T d1id1a_          79 SDNDADNAFVVLSAKDMSSDVKTVLAV  105 (153)
T ss_dssp             SSCHHHHHHHHHHHHHHTSSSCEEEEC
T ss_pred             cccHHHHHHHHHHHHHhCCCCceEEEE
Confidence            43322 222223345566776666544

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=82.95  E-value=1.3  Score=34.01  Aligned_cols=76  Identities=14%  Similarity=0.041  Sum_probs=50.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC-------cCCCC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------SFREQ  146 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-------~~~~~  146 (243)
                      ++++|=-|++.|. +..+|+.+  .+++|+.+|.+++.++.+.+.+..  -.++.++.+|+.+...-.       ...++
T Consensus         6 gK~alVTGas~GI-G~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~   82 (251)
T d1zk4a1           6 GKVAIITGGTLGI-GLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGT--PDQIQFFQHDSSDEDGWTKLFDATEKAFGP   82 (251)
T ss_dssp             TCEEEETTTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC--TTTEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCC--CCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            7888888877764 44444432  478999999999877665554432  235889999987632110       00157


Q ss_pred             ceEEEEcC
Q 026122          147 YDVAVARA  154 (243)
Q Consensus       147 fD~I~~~~  154 (243)
                      .|+++.++
T Consensus        83 iDiLVnnA   90 (251)
T d1zk4a1          83 VSTLVNNA   90 (251)
T ss_dssp             CCEEEECC
T ss_pred             ceEEEecc
Confidence            89999864

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=82.49  E-value=0.99  Score=34.90  Aligned_cols=77  Identities=13%  Similarity=0.072  Sum_probs=50.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHH-HHHcCCCCEEEEEccccccccC-------CcCCC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHA-VSLTQLLNVQIVRGRAETLGKD-------VSFRE  145 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~-~~~~~~~~v~~~~~d~~~~~~~-------~~~~~  145 (243)
                      ++++|=.|++.|. +..+|+.+  .+++|+.+|.+++.++.+.+. .+..+. ++..+.+|+.+...-       ....+
T Consensus         9 gK~alITGas~GI-G~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~~g   86 (260)
T d1h5qa_           9 NKTIIVTGGNRGI-GLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGV-KTKAYQCDVSNTDIVTKTIQQIDADLG   86 (260)
T ss_dssp             TEEEEEETTTSHH-HHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHTC-CEEEEECCTTCHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCC-ceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            7889999977664 44555432  478999999998766544443 344453 588889998763210       00125


Q ss_pred             CceEEEEcC
Q 026122          146 QYDVAVARA  154 (243)
Q Consensus       146 ~fD~I~~~~  154 (243)
                      +.|+++.++
T Consensus        87 ~iDilVnnA   95 (260)
T d1h5qa_          87 PISGLIANA   95 (260)
T ss_dssp             SEEEEEECC
T ss_pred             CCcEecccc
Confidence            799999864

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=82.03  E-value=6  Score=27.25  Aligned_cols=111  Identities=17%  Similarity=0.160  Sum_probs=55.9

Q ss_pred             eEEEEcCCC-ChH-HHHHHHHCCCCEEEEEeCCHHHHHH-HHHHHHHcCC-CCEEEEEccccccccCCcCCCCceEEEEc
Q 026122           78 KLVDVGTGA-GLP-GLVLAIACPDWKVTLLESMNKRCVF-LEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAVAR  153 (243)
Q Consensus        78 ~VLDiGcG~-G~~-~~~la~~~~~~~v~~vD~s~~~~~~-a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  153 (243)
                      +|-=||+|. |.. +..++...-..++..+|++++.++- +........+ .+..+..+|.+++       ...|+|+..
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~~-------~~adivvit   74 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYADL-------KGSDVVIVA   74 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGG-------TTCSEEEEC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcHHHh-------cCCCEEEEe
Confidence            455567653 222 2223333334589999999876542 2222222222 2356666676665       347988875


Q ss_pred             Cc------cc-----------HHHHHHHHccCcccCeEEEEEeCCCcHHHHHHHHHHHHHhCCe
Q 026122          154 AV------AE-----------MRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGAS  200 (243)
Q Consensus       154 ~~------~~-----------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~l~~~g~~  200 (243)
                      +-      ..           ..++.+.+.+ ..|++++++..++  -..+..+  .++..||.
T Consensus        75 ag~~~~~g~~r~dl~~~N~~I~~~i~~~i~~-~~p~aivivvtNP--vd~~t~~--~~k~sg~p  133 (140)
T d1a5za1          75 AGVPQKPGETRLQLLGRNARVMKEIARNVSK-YAPDSIVIVVTNP--VDVLTYF--FLKESGMD  133 (140)
T ss_dssp             CCCCCCSSCCHHHHHHHHHHHHHHHHHHHHH-HCTTCEEEECSSS--HHHHHHH--HHHHHTCC
T ss_pred             cccccCCCcchhhhhccccchHHHHHHHHHh-cCCCcEEEEeCCc--HHHHHHH--HHHHHCcC
Confidence            31      01           2333333332 2488987775554  3333332  23455663

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=81.56  E-value=2.1  Score=33.12  Aligned_cols=77  Identities=18%  Similarity=0.151  Sum_probs=51.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCH-HHHHHHHHHHHHcCCCCEEEEEccccccccCC-------cCCC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMN-KRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------SFRE  145 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~-~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-------~~~~  145 (243)
                      ++++|=.|++.|. +..+|+.+  .+++|+.+|.+. +.++.+.+.++..+. ++..+.+|+.+...-.       ...+
T Consensus         7 gK~alITGas~GI-G~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~g~-~~~~~~~Dvt~~~~v~~~~~~~~~~~G   84 (261)
T d1geea_           7 GKVVVITGSSTGL-GKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGG-EAIAVKGDVTVESDVINLVQSAIKEFG   84 (261)
T ss_dssp             TCEEEETTCSSHH-HHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC-EEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCcHH-HHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            7888888888775 44455432  478999999874 456666666666664 4788889987632110       0015


Q ss_pred             CceEEEEcC
Q 026122          146 QYDVAVARA  154 (243)
Q Consensus       146 ~fD~I~~~~  154 (243)
                      +.|+++.++
T Consensus        85 ~iDiLVnnA   93 (261)
T d1geea_          85 KLDVMINNA   93 (261)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEeeccc
Confidence            789999874

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=81.27  E-value=1.7  Score=33.51  Aligned_cols=74  Identities=14%  Similarity=0.008  Sum_probs=48.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCC-------cCCCC
Q 026122           76 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------SFREQ  146 (243)
Q Consensus        76 ~~~VLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-------~~~~~  146 (243)
                      ++++|=.|++.|. +..+|+.+  .+++|+.+|.+++.++.   .++..+ .++.++.+|+.+...-.       ...++
T Consensus         5 gK~alVTGas~GI-G~aia~~la~~Ga~V~~~~r~~~~~~~---~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   79 (254)
T d1hdca_           5 GKTVIITGGARGL-GAEAARQAVAAGARVVLADVLDEEGAA---TARELG-DAARYQHLDVTIEEDWQRVVAYAREEFGS   79 (254)
T ss_dssp             CSEEEEETTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHH---HHHTTG-GGEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCcCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHH---HHHHhC-CceEEEEcccCCHHHHHHHHHHHHHHcCC
Confidence            8899999998875 33444432  47899999999875543   334333 34888999987632110       00157


Q ss_pred             ceEEEEcC
Q 026122          147 YDVAVARA  154 (243)
Q Consensus       147 fD~I~~~~  154 (243)
                      .|+++.++
T Consensus        80 iDilVnnA   87 (254)
T d1hdca_          80 VDGLVNNA   87 (254)
T ss_dssp             CCEEEECC
T ss_pred             ccEEEecC
Confidence            89999864

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=81.25  E-value=0.1  Score=37.44  Aligned_cols=90  Identities=11%  Similarity=0.051  Sum_probs=51.3

Q ss_pred             eEEEEcCCCChHHHHHHH--HCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC---EEEEEccccccccCCcCCCCceEEEE
Q 026122           78 KLVDVGTGAGLPGLVLAI--ACPDWKVTLLESMNKRCVFLEHAVSLTQLLN---VQIVRGRAETLGKDVSFREQYDVAVA  152 (243)
Q Consensus        78 ~VLDiGcG~G~~~~~la~--~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~---v~~~~~d~~~~~~~~~~~~~fD~I~~  152 (243)
                      +|+=||+|.  ++..+|.  ...+.+|+.++.+++..+.    ....+...   ......+..+.      .+.+|+|+.
T Consensus         2 kI~IiGaG~--iG~~~a~~L~~~G~~V~~~~r~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~------~~~~D~iii   69 (167)
T d1ks9a2           2 KITVLGCGA--LGQLWLTALCKQGHEVQGWLRVPQPYCS----VNLVETDGSIFNESLTANDPDF------LATSDLLLV   69 (167)
T ss_dssp             EEEEECCSH--HHHHHHHHHHHTTCEEEEECSSCCSEEE----EEEECTTSCEEEEEEEESCHHH------HHTCSEEEE
T ss_pred             EEEEECcCH--HHHHHHHHHHHCCCceEEEEcCHHHhhh----hccccCCccccccccccchhhh------hcccceEEE
Confidence            677788864  3333332  2246799999998742211    01111111   01111111110      146999997


Q ss_pred             cC-cccHHHHHHHHccCcccCeEEEEEe
Q 026122          153 RA-VAEMRILAEYCLPLVRVGGLFVAAK  179 (243)
Q Consensus       153 ~~-~~~~~~~l~~~~~~LkpgG~l~~~~  179 (243)
                      .. ....+..++.+.+.+.++..++...
T Consensus        70 ~vka~~~~~~~~~l~~~~~~~~~Iv~~q   97 (167)
T d1ks9a2          70 TLKAWQVSDAVKSLASTLPVTTPILLIH   97 (167)
T ss_dssp             CSCGGGHHHHHHHHHTTSCTTSCEEEEC
T ss_pred             eecccchHHHHHhhccccCcccEEeecc
Confidence            54 3467889999999999998877665

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=80.50  E-value=3.8  Score=28.83  Aligned_cols=108  Identities=12%  Similarity=0.103  Sum_probs=60.3

Q ss_pred             eEEEEcCCC-ChH-HHHHHHHCCCCEEEE-EeCCHHHHHHHHHHHHHcCCCCEEEEEccccccccCCcCCCCceEEEEcC
Q 026122           78 KLVDVGTGA-GLP-GLVLAIACPDWKVTL-LESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA  154 (243)
Q Consensus        78 ~VLDiGcG~-G~~-~~~la~~~~~~~v~~-vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  154 (243)
                      +|.=||||. |.- -+......++.++++ +|.+++.   +++..+..+..   + ..+.+++.      ...|+|+...
T Consensus         3 ri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~---~~~~~~~~~~~---~-~~~~~~l~------~~~D~V~I~t   69 (164)
T d1tlta1           3 RIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAK---ALPICESWRIP---Y-ADSLSSLA------ASCDAVFVHS   69 (164)
T ss_dssp             EEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTT---HHHHHHHHTCC---B-CSSHHHHH------TTCSEEEECS
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHh---hhhhhhccccc---c-cccchhhh------hhcccccccc
Confidence            577789986 432 233344457777765 5787754   44444455543   2 22334332      3579887654


Q ss_pred             ccc-HHHHHHHHccCcccCeEEEEEeC-CCcHHHHHHHHHHHHHhCCee
Q 026122          155 VAE-MRILAEYCLPLVRVGGLFVAAKG-HDPQEEVKNSERAVQLMGASL  201 (243)
Q Consensus       155 ~~~-~~~~l~~~~~~LkpgG~l~~~~~-~~~~~~~~~~~~~l~~~g~~~  201 (243)
                      ... ..++   +...|+.|=.+++..+ .....+..++.+..++.|..+
T Consensus        70 p~~~h~~~---~~~al~~gk~V~~EKPla~~~~e~~~l~~~a~~~~~~~  115 (164)
T d1tlta1          70 STASHFDV---VSTLLNAGVHVCVDKPLAENLRDAERLVELAARKKLTL  115 (164)
T ss_dssp             CTTHHHHH---HHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCE
T ss_pred             cchhcccc---ccccccccceeeccccccCCHHHHHHHHHHHHHcCCcE
Confidence            332 2222   3334555545666553 345677788888888887543