Citrus Sinensis ID: 026175

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240--
Protein Sequence
MESIQAKQGLVGPNDPIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALKTFWGFTAFQNPTAGAEGSW
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccEEEEEEccEEEEEEccccccccEEEcccccEEEEEccEEEEEccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccccccEEEEEEEEccccEEEEEcccccEEEccEEEEccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccccccEEEEEEcccccEEEcccccccccccccEEcccccccccc
Secondary Structure Prediction (SSPRO)
cccHHcccccccccccccccccccEEEccEEEEEEccEEEEEEEccEEEccEEEEcccccEEEEcccEEEEEEEEHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccccHEEEEEcEcccccEEEEEccccccccccEEEEcccccEHHHHHcccccccccHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEcccEEEEccccHHHHHHHHHHcccccccEccc
Coil and Loop (DISEMBL)
mesiqakqglvgpndpiqrtqlpyvtgtSVVALKYKDGILMaadmggsygstiryksverikpigkhsllgasgeiSDFQELLRNLDELilydnmwddgnslgpkeLHSYLTRVMYnrrnkfdplwnslvlggvkngqkYLGMVSMIGVnfedshvatgfgnhlarpilrdewhenlsyeDGVKLLEKCMRVLLYRDRSAVNKLQIAKITeegttisqpyalktfwgftafqnptagaegsw
Flexible Loop (DISEMBL)
mesiqakqglvgpndpiqrtqlpyvTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIakiteegttisqPYALKTFWGFTAFQNPTAGAEGSW
Low Complexity Region (SEG)
MESIQAKQGLVGPNDPIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALKTFWGFTAFQNPTAGAEGSW
Disordered region (IsUnstruct)
******************RTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALKTFWGFTAFQ**********
Disordered Region (DISOPRED)
***********************YVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALKTFWGFTAFQNPT******W
Disordered Region (DISEMBL)
*********LVGPNDPIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALKTFWGFTAFQNPTAGAEGSW
Disordered Region (DISPRO)
*******************TQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALKTFWGFTAFQN***GA****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MESIQAKQGLVGPNDPIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALKTFWGFTAFQNPTAGAEGSW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	242	2.2.26 [Sep-21-2011]
Q7DLR9	246	Proteasome subunit beta t	yes	no	0.929	0.914	0.84	1e-114
Q3T108	264	Proteasome subunit beta t	yes	no	0.876	0.803	0.467	4e-55
P34067	263	Proteasome subunit beta t	yes	no	0.896	0.825	0.447	2e-54
P28070	264	Proteasome subunit beta t	yes	no	0.871	0.799	0.460	3e-54
P99026	264	Proteasome subunit beta t	yes	no	0.871	0.799	0.460	3e-54
P28024	242	Proteasome subunit beta t	N/A	no	0.871	0.871	0.436	8e-53
Q556Q0	259	Proteasome subunit beta t	yes	no	0.859	0.803	0.452	2e-50
Q9USQ9	262	Probable proteasome subun	yes	no	0.892	0.824	0.419	1e-48
P30657	266	Proteasome subunit beta t	yes	no	0.801	0.729	0.416	3e-38
Q9VNA5	268	Proteasome subunit beta t	yes	no	0.822	0.742	0.371	8e-38

>sp|Q7DLR9|PSB4_ARATH Proteasome subunit beta type-4 OS=Arabidopsis thaliana GN=PBG1 PE=1 SV=2

 Score =  412 bits (1059), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 189/225 (84%), Positives = 212/225 (94%)

Query: 18  QRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEIS 77
           QRT  PYVTGTS+VA+KYKDG+LMA+DMGGSYGST+RYK++ER+K IGKHSLLGASGEIS
Sbjct: 22  QRTLYPYVTGTSIVAIKYKDGVLMASDMGGSYGSTLRYKNIERVKAIGKHSLLGASGEIS 81

Query: 78  DFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNG 137
           DFQE+LR LDEL L DNMWDDGNSLGPKE+H+YLTRVMYNRRNKF+PLWN+LVLGGVKNG
Sbjct: 82  DFQEILRYLDELTLNDNMWDDGNSLGPKEIHNYLTRVMYNRRNKFNPLWNTLVLGGVKNG 141

Query: 138 QKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRD 197
           + YLGMVSMIGV+FED HVATGFGNHLARPILRDEWH +LS+EDGVKLLEKCMRVLLYRD
Sbjct: 142 KSYLGMVSMIGVSFEDDHVATGFGNHLARPILRDEWHADLSFEDGVKLLEKCMRVLLYRD 201

Query: 198 RSAVNKLQIAKITEEGTTISQPYALKTFWGFTAFQNPTAGAEGSW 242
           RSA+NKLQIAKITEEG T+SQPY+LKT+W F++F NPTAGA GSW
Sbjct: 202 RSAINKLQIAKITEEGVTVSQPYSLKTYWEFSSFHNPTAGAAGSW 246

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 5EC: .EC: 1

>sp|Q3T108|PSB4_BOVIN Proteasome subunit beta type-4 OS=Bos taurus GN=PSMB4 PE=1 SV=1

 Score =  214 bits (546), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 100/214 (46%), Positives = 152/214 (71%), Gaps = 2/214 (0%)

Query: 15  DPIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASG 74
            PI RTQ P VTGTSV+ LK++ G+++AADM GSYGS  R++++ RI  +   ++LGASG
Sbjct: 41  SPITRTQNPMVTGTSVLGLKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASG 100

Query: 75  EISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGV 134
           + +DFQ L + L ++++ + +  DG+S  PK +HS+LTR MY+RR+K +PLWN++V+GG 
Sbjct: 101 DYADFQYLKQVLGQMVIDEELLGDGHSYSPKAIHSWLTRAMYSRRSKMNPLWNTMVIGGY 160

Query: 135 KNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRD--EWHENLSYEDGVKLLEKCMRV 192
            +G+ +LG V M+GV +E   +ATG+G +LA+P+LR+  E    LS  +  +L+E+CMRV
Sbjct: 161 ADGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARELVERCMRV 220

Query: 193 LLYRDRSAVNKLQIAKITEEGTTISQPYALKTFW 226
           L YRD  + N+ QIA +TE+G  I  P + +T W
Sbjct: 221 LYYRDARSYNRFQIATVTEKGVEIEGPLSAETNW 254

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

>sp|P34067|PSB4_RAT Proteasome subunit beta type-4 OS=Rattus norvegicus GN=Psmb4 PE=1 SV=2

 Score =  212 bits (539), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 98/219 (44%), Positives = 152/219 (69%), Gaps = 2/219 (0%)

Query: 10  LVGPNDPIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSL 69
           +  P  PI RTQ P VTGTSV+ +K+  G+++AADM GSYGS  R++++ RI  +   ++
Sbjct: 35  MSAPARPITRTQNPMVTGTSVLGVKFDCGVVIAADMLGSYGSLARFRNISRIMRVNDSTM 94

Query: 70  LGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSL 129
           LGASG+ +DFQ L + L ++++ + ++ DG+S  P+ +HS+LTR MY+RR+K +PLWN+ 
Sbjct: 95  LGASGDYADFQYLKQVLGQMVIDEELFGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTK 154

Query: 130 VLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRD--EWHENLSYEDGVKLLE 187
           V+GG   G+ +LG V M+GV +E   +ATG+G +LA+P+LR+  E    LS  +  +L+E
Sbjct: 155 VIGGYAGGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARELVE 214

Query: 188 KCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALKTFW 226
           +CMRVL YRD  + N+ Q+A +TE+G  I  P + +T W
Sbjct: 215 RCMRVLYYRDARSYNRFQVATVTEKGVEIEGPLSAQTNW 253

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity. SMAD1/OAZ1/PSMB4 complex mediates the degradation of the CREBBP/EP300 repressor SNIP1.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

>sp|P28070|PSB4_HUMAN Proteasome subunit beta type-4 OS=Homo sapiens GN=PSMB4 PE=1 SV=4

 Score =  211 bits (538), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 98/213 (46%), Positives = 151/213 (70%), Gaps = 2/213 (0%)

Query: 16  PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGE 75
           PI RTQ P VTGTSV+ +K++ G+++AADM GSYGS  R++++ RI  +   ++LGASG+
Sbjct: 42  PITRTQNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGD 101

Query: 76  ISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVK 135
            +DFQ L + L ++++ + +  DG+S  P+ +HS+LTR MY+RR+K +PLWN++V+GG  
Sbjct: 102 YADFQYLKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYA 161

Query: 136 NGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRD--EWHENLSYEDGVKLLEKCMRVL 193
           +G+ +LG V M+GV +E   +ATG+G +LA+P+LR+  E    LS  +   L+E+CMRVL
Sbjct: 162 DGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARDLVERCMRVL 221

Query: 194 LYRDRSAVNKLQIAKITEEGTTISQPYALKTFW 226
            YRD  + N+ QIA +TE+G  I  P + +T W
Sbjct: 222 YYRDARSYNRFQIATVTEKGVEIEGPLSTETNW 254

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity. Mediates the lipopolysaccharide-induced signal macrophage proteasome (By similarity). SMAD1/OAZ1/PSMB4 complex mediates the degradation of the CREBBP/EP300 repressor SNIP1.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

>sp|P99026|PSB4_MOUSE Proteasome subunit beta type-4 OS=Mus musculus GN=Psmb4 PE=1 SV=1

 Score =  211 bits (538), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 98/213 (46%), Positives = 151/213 (70%), Gaps = 2/213 (0%)

Query: 16  PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGE 75
           PI RTQ P VTGTSV+ +K+  G+++AADM GSYGS  R++++ RI  +   ++LGASG+
Sbjct: 42  PITRTQNPMVTGTSVLGVKFDGGVVIAADMLGSYGSLARFRNISRIMRVNDSTMLGASGD 101

Query: 76  ISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVK 135
            +DFQ L + L ++++ + +  DG+S  P+ +HS+LTR MY+RR+K +PLWN++V+GG  
Sbjct: 102 YADFQYLKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYA 161

Query: 136 NGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRD--EWHENLSYEDGVKLLEKCMRVL 193
           +G+ +LG V M+GV +E   +ATG+G +LA+P+LR+  E    LS  +  +L+E+CMRVL
Sbjct: 162 DGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARELVERCMRVL 221

Query: 194 LYRDRSAVNKLQIAKITEEGTTISQPYALKTFW 226
            YRD  + N+ QIA +TE+G  I  P + +T W
Sbjct: 222 YYRDARSYNRFQIATVTEKGVEIEGPLSAQTNW 254

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity. Mediates the lipopolysaccharide-induced signal macrophage proteasome. SMAD1/OAZ1/PSMB4 complex mediates the degradation of the CREBBP/EP300 repressor SNIP1.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

>sp|P28024|PSB4_XENLA Proteasome subunit beta type-4 (Fragment) OS=Xenopus laevis GN=psmb4 PE=2 SV=2

 Score =  207 bits (526), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 93/213 (43%), Positives = 152/213 (71%), Gaps = 2/213 (0%)

Query: 16  PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGE 75
           P++ T  P VTGTSV+ +K+  G+++AADM GSYGS  R++++ RI  + ++++LGASG+
Sbjct: 20  PVRHTLNPMVTGTSVLGVKFDGGVIIAADMLGSYGSLARFRNISRIMKVNENTILGASGD 79

Query: 76  ISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVK 135
            +D+Q L + +D++++ + +  DG++  PK +HS+LTRVMYNRR+K +PLWN++V+GG  
Sbjct: 80  YADYQYLKQVIDQMVIDEELVGDGHNYSPKAIHSWLTRVMYNRRSKMNPLWNTVVIGGFY 139

Query: 136 NGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRD--EWHENLSYEDGVKLLEKCMRVL 193
           NG+ +LG V  +GV +E   +ATGFG +LA+P+LR+  E    LS E+  +L+++CM+VL
Sbjct: 140 NGESFLGYVDKLGVAYEAPTIATGFGAYLAQPLLREVTENKATLSKEEARQLVDRCMKVL 199

Query: 194 LYRDRSAVNKLQIAKITEEGTTISQPYALKTFW 226
            YRD  + N+ +I  +TE G  +  P + +T W
Sbjct: 200 YYRDARSYNRFEITTVTESGVEVEGPLSSETNW 232

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity.

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

>sp|Q556Q0|PSB4_DICDI Proteasome subunit beta type-4 OS=Dictyostelium discoideum GN=psmB4-1 PE=3 SV=1

 Score =  198 bits (504), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 95/210 (45%), Positives = 143/210 (68%), Gaps = 2/210 (0%)

Query: 18  QRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEIS 77
           Q+T  P VTGTSV+A+KY  G++M +DM  SYGS  R+ S ER+K  G ++++GASGE S
Sbjct: 35  QKTLDPIVTGTSVIAIKYDKGVVMGSDMLLSYGSLARFNSTERMKKFGGYTIVGASGEYS 94

Query: 78  DFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNG 137
           DFQ +   L++L+  D+  DDG+ L  +E+ +YL RV+YN+RN+ +PLWN+LV+ G + G
Sbjct: 95  DFQSITNTLNDLVTDDHCMDDGSKLSSEEIWNYLARVLYNQRNRGNPLWNTLVVMGYQGG 154

Query: 138 QKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHE--NLSYEDGVKLLEKCMRVLLY 195
           + +LG V ++G  ++D  + TG+G+H+A P+LR    E  N++ E   +L++ C+RVL Y
Sbjct: 155 KSFLGKVDLVGTCYKDDIITTGYGSHIALPLLRKARDENPNMNLEQAKQLIQDCLRVLFY 214

Query: 196 RDRSAVNKLQIAKITEEGTTISQPYALKTF 225
           RD  +  K+QI+   EEG  IS P  L TF
Sbjct: 215 RDARSSKKIQISVAGEEGIEISGPIELDTF 244

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity.

Dictyostelium discoideum (taxid: 44689)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

>sp|Q9USQ9|PSB7_SCHPO Probable proteasome subunit beta type-7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC577.10 PE=3 SV=1

 Score =  192 bits (489), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 94/224 (41%), Positives = 140/224 (62%), Gaps = 8/224 (3%)

Query: 16  PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGE 75
           PIQRT  P VTG+SV+ALK+ DG+++AAD   SYGS  R+  VER+  +G ++++GA G+
Sbjct: 32  PIQRTVQPIVTGSSVLALKFADGVMIAADNLASYGSLARFYDVERLTKVGDNTIVGAGGD 91

Query: 76  ISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGV- 134
           ISD+Q++ R L++L + +  + DG +L P  +H YL++V+Y RRNK DP WN L++ GV 
Sbjct: 92  ISDYQQIQRLLEKLEIKEGNYGDGYALQPSYIHEYLSKVLYARRNKLDPYWNQLIVAGVD 151

Query: 135 -KNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILR-----DEWHENLSYEDGVKLLEK 188
            +N + Y+    + G  +    +ATGF  HLA P+LR     D W + LS E     +++
Sbjct: 152 GENKEPYVAFADLRGTTYSAPAIATGFAMHLALPMLRKATDDDRW-KTLSKESARATIDE 210

Query: 189 CMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALKTFWGFTAFQ 232
           CMRVL YRD  ++NK  +A IT EG       ++ + W F   Q
Sbjct: 211 CMRVLFYRDARSLNKFSVATITPEGIEFQTDQSVSSKWAFAEKQ 254

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

>sp|P30657|PSB7_YEAST Proteasome subunit beta type-7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PRE4 PE=1 SV=1

 Score =  158 bits (400), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 85/204 (41%), Positives = 131/204 (64%), Gaps = 10/204 (4%)

Query: 16  PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGE 75
           P+  TQ P VTGTSV+++KY +G+++AAD  GSYGS +R+  VER+ P+G ++++G SG+
Sbjct: 30  PMVNTQQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGD 89

Query: 76  ISDFQELLRNLDELIL---YDN-MWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVL 131
           ISD Q + R L +L+    YDN + D   +L P  +  YL  VMY RR+K +PLWN++++
Sbjct: 90  ISDMQHIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIV 149

Query: 132 GGVK-NGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEW-HENLSYEDGVKLLEK- 188
            GV+ NG ++L  V+++GV +    +ATGFG H+A P+LR     E+   +  V++ E+ 
Sbjct: 150 AGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEA 209

Query: 189 ---CMRVLLYRDRSAVNKLQIAKI 209
               MRVL YRD  +     +A I
Sbjct: 210 IVNAMRVLYYRDARSSRNFSLAII 233

The proteasome degrades poly-ubiquitinated proteins in the cytoplasm and in the nucleus. It is essential for the regulated turnover of proteins and for the removal of misfolded proteins. The proteasome is a multicatalytic proteinase complex that is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. It has an ATP-dependent proteolytic activity. PRE3 and PRE4 are necessary for the peptidyl-glutamyl-peptide-hydrolyzing activity.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

>sp|Q9VNA5|PSB4_DROME Proteasome subunit beta type-4 OS=Drosophila melanogaster GN=Prosbeta7 PE=2 SV=1

 Score =  157 bits (396), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 75/202 (37%), Positives = 125/202 (61%), Gaps = 3/202 (1%)

Query: 30  VVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDEL 89
           V+ ++Y  G+++AAD   SYGS  RY+++ER+  + K+ LLG SG+ +D Q + RN+D+ 
Sbjct: 60  VLGIRYDSGVMLAADTLVSYGSMARYQNIERVFKVNKNILLGGSGDFADIQSIKRNIDQK 119

Query: 90  ILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKN-GQKYLGMVSMIG 148
           ++ D   DD   + PK L S++TRV+YNRR++ +PL+  +V+GGV N G  YL  V + G
Sbjct: 120 MIEDQCCDDNIEMKPKSLASWMTRVLYNRRSRMNPLYIDVVVGGVDNEGTPYLANVDLRG 179

Query: 149 VNFEDSHVATGFGNHLARPILRDEWHENLSYE--DGVKLLEKCMRVLLYRDRSAVNKLQI 206
            ++ED  VATGF  HLA P++R++  ++  +   +  +L+  CM VL YRD   +++  +
Sbjct: 180 RSYEDYVVATGFARHLAVPLVREKKPKDRDFTAVEASELIRTCMEVLYYRDTRNISQYTV 239

Query: 207 AKITEEGTTISQPYALKTFWGF 228
              +  G  +  P+ +   W F
Sbjct: 240 GVCSVNGCGVEGPFQVNENWTF 261

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity.

Drosophila melanogaster (taxid: 7227)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	242
449463653	245	PREDICTED: proteasome subunit beta type-	0.995	0.983	0.838	1e-119
225435249	245	PREDICTED: proteasome subunit beta type-	0.929	0.918	0.906	1e-119
224141787	244	predicted protein [Populus trichocarpa]	0.991	0.983	0.829	1e-118
224089062	244	predicted protein [Populus trichocarpa]	0.975	0.967	0.813	1e-115
297848158	246	hypothetical protein ARALYDRAFT_474808 [	0.929	0.914	0.848	1e-114
3421123	246	20S proteasome beta subunit PBG1 [Arabid	0.929	0.914	0.844	1e-113
15223537	246	proteasome subunit beta type-4 [Arabidop	0.929	0.914	0.84	1e-113
351722547	232	uncharacterized protein LOC100527174 [Gl	0.929	0.969	0.844	1e-113
449531344	221	PREDICTED: proteasome subunit beta type-	0.909	0.995	0.863	1e-112
357500387	232	Proteasome subunit beta type [Medicago t	0.929	0.969	0.844	1e-112

>gi|449463653|ref|XP_004149546.1| PREDICTED: proteasome subunit beta type-4-like [Cucumis sativus]

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 202/241 (83%), Positives = 225/241 (93%)

Query: 2   ESIQAKQGLVGPNDPIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERI 61
           +S QA  GL+ P  PIQRTQ PYVTGTSVVA+KYKDGILM +D+GGSYGST+RYKSVERI
Sbjct: 5   DSNQANHGLLCPEAPIQRTQYPYVTGTSVVAIKYKDGILMVSDLGGSYGSTLRYKSVERI 64

Query: 62  KPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNK 121
           K IGKHSLLGASGEISDFQ+LLR+LD+LILYDNMWDDGN+LGPKE+HSYLTRVMYNRRNK
Sbjct: 65  KAIGKHSLLGASGEISDFQQLLRDLDQLILYDNMWDDGNALGPKEIHSYLTRVMYNRRNK 124

Query: 122 FDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYED 181
           FDP WN+LVLGGVKNGQKYLG V+MIGV FED+HV TGFGNHLARPILRDEW E+L++E+
Sbjct: 125 FDPYWNALVLGGVKNGQKYLGTVNMIGVTFEDNHVTTGFGNHLARPILRDEWREDLTFEE 184

Query: 182 GVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALKTFWGFTAFQNPTAGAEGS 241
           GVKLLEKCMRVLLYRDRSAVNKLQIAKITEEG TISQPY+LKTFW ++AF+NPT+GAEGS
Sbjct: 185 GVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGVTISQPYSLKTFWNYSAFENPTSGAEGS 244

Query: 242 W 242
           W
Sbjct: 245 W 245

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435249|ref|XP_002284989.1| PREDICTED: proteasome subunit beta type-4 isoform 1 [Vitis vinifera] gi|297746225|emb|CBI16281.3| unnamed protein product [Vitis vinifera]

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 204/225 (90%), Positives = 217/225 (96%)

Query: 18  QRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEIS 77
           QRT  PYVTGTSV+ +KYKDGILMAADMGGSYGST+RYKSVER+KPIGKHSLLGASGEIS
Sbjct: 21  QRTLYPYVTGTSVIGVKYKDGILMAADMGGSYGSTLRYKSVERMKPIGKHSLLGASGEIS 80

Query: 78  DFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNG 137
           DFQE+L  LDELILYDNMWDDGNSLGPKE+HSYLTRVMYNRRNKF+PLWNSLVLGGVKNG
Sbjct: 81  DFQEILHYLDELILYDNMWDDGNSLGPKEVHSYLTRVMYNRRNKFNPLWNSLVLGGVKNG 140

Query: 138 QKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRD 197
           QKYLG VSMIGV+FED+HVATGFGNHLARPILRDEWHE+LS+EDGVKLLEKCMRVLLYRD
Sbjct: 141 QKYLGTVSMIGVHFEDNHVATGFGNHLARPILRDEWHEDLSFEDGVKLLEKCMRVLLYRD 200

Query: 198 RSAVNKLQIAKITEEGTTISQPYALKTFWGFTAFQNPTAGAEGSW 242
           RSAVNKLQIAKITEEG TISQPY+LKTFWGF+AFQNPT GAEGSW
Sbjct: 201 RSAVNKLQIAKITEEGVTISQPYSLKTFWGFSAFQNPTVGAEGSW 245

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141787|ref|XP_002324245.1| predicted protein [Populus trichocarpa] gi|222865679|gb|EEF02810.1| predicted protein [Populus trichocarpa]

 Score =  428 bits (1101), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 200/241 (82%), Positives = 224/241 (92%), Gaps = 1/241 (0%)

Query: 3   SIQAKQGLVGPNDP-IQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERI 61
           S + KQ  +  ++P IQRTQ PYVTG+SVVALKYKDGILMAADMGGSYGST+RYKSVERI
Sbjct: 4   SSETKQNSLLSSEPGIQRTQYPYVTGSSVVALKYKDGILMAADMGGSYGSTLRYKSVERI 63

Query: 62  KPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNK 121
           KP+GKHSL+GASGEISDFQE++R LDE +L DNMWDDGNSLGPKE+HSYLTRVMYNRRNK
Sbjct: 64  KPVGKHSLIGASGEISDFQEIMRYLDEQVLNDNMWDDGNSLGPKEIHSYLTRVMYNRRNK 123

Query: 122 FDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYED 181
           FDPLWN+L+LGGVK GQK+LGMV+MIGVNFE++HVATGFGNH+A+PILR EWHENL++E+
Sbjct: 124 FDPLWNTLLLGGVKKGQKFLGMVTMIGVNFEENHVATGFGNHMAQPILRSEWHENLTFEE 183

Query: 182 GVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALKTFWGFTAFQNPTAGAEGS 241
           GV LLEKCMRVLLYRDRSAVNK QIAKITEEG TISQPYALKTFWGF AF+NPTAGAEGS
Sbjct: 184 GVALLEKCMRVLLYRDRSAVNKFQIAKITEEGVTISQPYALKTFWGFKAFENPTAGAEGS 243

Query: 242 W 242
           W
Sbjct: 244 W 244

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224089062|ref|XP_002308619.1| predicted protein [Populus trichocarpa] gi|222854595|gb|EEE92142.1| predicted protein [Populus trichocarpa]

 Score =  419 bits (1077), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 192/236 (81%), Positives = 218/236 (92%)

Query: 7   KQGLVGPNDPIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGK 66
           +  L+  +  IQRTQ PYVTGTSVVALKYKDGILMAADMGGSYGST+RYKSVERIKP+GK
Sbjct: 9   QHTLLSSDYGIQRTQYPYVTGTSVVALKYKDGILMAADMGGSYGSTLRYKSVERIKPVGK 68

Query: 67  HSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLW 126
           HS++GASGEISDFQE++R LDE +L DNMWDD NSLGPKE+HSYLTRVMYNRRNKFDPLW
Sbjct: 69  HSIIGASGEISDFQEIMRYLDEQVLNDNMWDDRNSLGPKEIHSYLTRVMYNRRNKFDPLW 128

Query: 127 NSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLL 186
           N+L+LGGVK GQK+LGMV+MIGVNFE++H+ATGFGNH+A+P+LR EWHENL++E+GV LL
Sbjct: 129 NTLILGGVKKGQKFLGMVTMIGVNFEENHIATGFGNHMAQPLLRAEWHENLTFEEGVTLL 188

Query: 187 EKCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALKTFWGFTAFQNPTAGAEGSW 242
           EKCMRVLLYRDRSAVNK QIAKITEEG TISQPYALKTFWG+ AF+NPT GAEGSW
Sbjct: 189 EKCMRVLLYRDRSAVNKFQIAKITEEGVTISQPYALKTFWGYKAFENPTVGAEGSW 244

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297848158|ref|XP_002891960.1| hypothetical protein ARALYDRAFT_474808 [Arabidopsis lyrata subsp. lyrata] gi|297337802|gb|EFH68219.1| hypothetical protein ARALYDRAFT_474808 [Arabidopsis lyrata subsp. lyrata]

 Score =  416 bits (1068), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 191/225 (84%), Positives = 213/225 (94%)

Query: 18  QRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEIS 77
           QRT  PYVTGTS+VA+KYKDG+LMA+DMGGSYGST+RYK++ER+K IGKHSLLGASGEIS
Sbjct: 22  QRTLYPYVTGTSIVAIKYKDGVLMASDMGGSYGSTLRYKNIERVKAIGKHSLLGASGEIS 81

Query: 78  DFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNG 137
           DFQE+LR LDEL L DNMWDDGNSLGPKE+H+YLTRVMYNRRNKF+PLWN+LVLGGVKNG
Sbjct: 82  DFQEILRYLDELTLNDNMWDDGNSLGPKEIHNYLTRVMYNRRNKFNPLWNTLVLGGVKNG 141

Query: 138 QKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRD 197
           + YLGMVSMIGV+FED HVATGFGNHLARPILRDEWH +LS+EDGVKLLEKCMRVLLYRD
Sbjct: 142 KSYLGMVSMIGVSFEDDHVATGFGNHLARPILRDEWHADLSFEDGVKLLEKCMRVLLYRD 201

Query: 198 RSAVNKLQIAKITEEGTTISQPYALKTFWGFTAFQNPTAGAEGSW 242
           RSA+NKLQIAKITEEG T+SQPY+LKTFW F++F NPTAGAEGSW
Sbjct: 202 RSAINKLQIAKITEEGVTVSQPYSLKTFWEFSSFHNPTAGAEGSW 246

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3421123|gb|AAC32074.1| 20S proteasome beta subunit PBG1 [Arabidopsis thaliana]

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 190/225 (84%), Positives = 212/225 (94%)

Query: 18  QRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEIS 77
           QRT  PYVTGTSVVA+KYKDG+LMA+DMGGSYGST+RYK++ER+K IGKHSLLGASGEIS
Sbjct: 22  QRTLYPYVTGTSVVAIKYKDGVLMASDMGGSYGSTLRYKNIERVKAIGKHSLLGASGEIS 81

Query: 78  DFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNG 137
           DFQE+LR LDEL L DNMWDDGNSLGPKE+H+YLTRVMYNRRNKF+PLWN+LVLGGVKNG
Sbjct: 82  DFQEILRYLDELTLNDNMWDDGNSLGPKEIHNYLTRVMYNRRNKFNPLWNTLVLGGVKNG 141

Query: 138 QKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRD 197
           + YLGMVSMIGV+FED HVATGFGNHLARPILRDEWH +LS+EDGVKLLEKCMRVLLYRD
Sbjct: 142 KSYLGMVSMIGVSFEDDHVATGFGNHLARPILRDEWHADLSFEDGVKLLEKCMRVLLYRD 201

Query: 198 RSAVNKLQIAKITEEGTTISQPYALKTFWGFTAFQNPTAGAEGSW 242
           RSA+NKLQIAKITEEG T+SQPY+LKT+W F++F NPTAGA GSW
Sbjct: 202 RSAINKLQIAKITEEGVTVSQPYSLKTYWEFSSFHNPTAGAAGSW 246

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15223537|ref|NP_176040.1| proteasome subunit beta type-4 [Arabidopsis thaliana] gi|82581521|sp|Q7DLR9.2|PSB4_ARATH RecName: Full=Proteasome subunit beta type-4; AltName: Full=20S proteasome beta subunit G-1; AltName: Full=Proteasome component H; AltName: Full=Proteasome subunit beta type-7; Flags: Precursor gi|12323023|gb|AAG51500.1|AC058785_3 20S proteasome beta subunit (PBG1) [Arabidopsis thaliana] gi|14190405|gb|AAK55683.1|AF378880_1 At1g56450/F13N6_3 [Arabidopsis thaliana] gi|15010590|gb|AAK73954.1| At1g56450/F13N6_3 [Arabidopsis thaliana] gi|15450551|gb|AAK96453.1| At1g56450/F13N6_3 [Arabidopsis thaliana] gi|62320870|dbj|BAD93840.1| putative protein [Arabidopsis thaliana] gi|332195276|gb|AEE33397.1| proteasome subunit beta type-4 [Arabidopsis thaliana]

 Score =  412 bits (1059), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 189/225 (84%), Positives = 212/225 (94%)

Query: 18  QRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEIS 77
           QRT  PYVTGTS+VA+KYKDG+LMA+DMGGSYGST+RYK++ER+K IGKHSLLGASGEIS
Sbjct: 22  QRTLYPYVTGTSIVAIKYKDGVLMASDMGGSYGSTLRYKNIERVKAIGKHSLLGASGEIS 81

Query: 78  DFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNG 137
           DFQE+LR LDEL L DNMWDDGNSLGPKE+H+YLTRVMYNRRNKF+PLWN+LVLGGVKNG
Sbjct: 82  DFQEILRYLDELTLNDNMWDDGNSLGPKEIHNYLTRVMYNRRNKFNPLWNTLVLGGVKNG 141

Query: 138 QKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRD 197
           + YLGMVSMIGV+FED HVATGFGNHLARPILRDEWH +LS+EDGVKLLEKCMRVLLYRD
Sbjct: 142 KSYLGMVSMIGVSFEDDHVATGFGNHLARPILRDEWHADLSFEDGVKLLEKCMRVLLYRD 201

Query: 198 RSAVNKLQIAKITEEGTTISQPYALKTFWGFTAFQNPTAGAEGSW 242
           RSA+NKLQIAKITEEG T+SQPY+LKT+W F++F NPTAGA GSW
Sbjct: 202 RSAINKLQIAKITEEGVTVSQPYSLKTYWEFSSFHNPTAGAAGSW 246

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722547|ref|NP_001235968.1| uncharacterized protein LOC100527174 [Glycine max] gi|255631716|gb|ACU16225.1| unknown [Glycine max]

 Score =  412 bits (1059), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 190/225 (84%), Positives = 214/225 (95%)

Query: 18  QRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEIS 77
           +RT  PYVTG+SVVA+KYKDGILMAADMGGSYGST+RYKSVERIKPIGKHSLLGASGEIS
Sbjct: 8   ERTLYPYVTGSSVVAIKYKDGILMAADMGGSYGSTLRYKSVERIKPIGKHSLLGASGEIS 67

Query: 78  DFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNG 137
           DFQE+LR LDELILYDNMWDDGNSLGPKE+H+YLTRVMYNRRN+F+PLWN+LVLGGVKNG
Sbjct: 68  DFQEILRYLDELILYDNMWDDGNSLGPKEVHNYLTRVMYNRRNEFNPLWNALVLGGVKNG 127

Query: 138 QKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRD 197
           QKYLGMV+MIG+NFED HVATG GNHLARPILRDEWHENL++E+GVKLLEKCMRVLLYRD
Sbjct: 128 QKYLGMVNMIGINFEDDHVATGLGNHLARPILRDEWHENLTFEEGVKLLEKCMRVLLYRD 187

Query: 198 RSAVNKLQIAKITEEGTTISQPYALKTFWGFTAFQNPTAGAEGSW 242
           RSAVNK+QI+KIT+EG T+  P++LKT+W F+AF+NPT GAE SW
Sbjct: 188 RSAVNKIQISKITDEGATVFPPFSLKTYWEFSAFKNPTVGAECSW 232

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449531344|ref|XP_004172646.1| PREDICTED: proteasome subunit beta type-4-like, partial [Cucumis sativus]

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 190/220 (86%), Positives = 211/220 (95%)

Query: 23  PYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQEL 82
           PYVTGTSVVA+KYKDGILM +D+GGSYGST+RYKSVERIK IGKHSLLGASGEISDFQ+L
Sbjct: 2   PYVTGTSVVAIKYKDGILMVSDLGGSYGSTLRYKSVERIKAIGKHSLLGASGEISDFQQL 61

Query: 83  LRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLG 142
           LR+LD+LILYDNMWDDGN+LGPKE+HSYLTRVMYNRRNKFDP WN+LVLGGVKNGQKYLG
Sbjct: 62  LRDLDQLILYDNMWDDGNALGPKEIHSYLTRVMYNRRNKFDPYWNALVLGGVKNGQKYLG 121

Query: 143 MVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVN 202
            V+MIGV FED+HV TGFGNHLARPILRDEW E+L++E+GVKLLEKCMRVLLYRDRSAVN
Sbjct: 122 TVNMIGVTFEDNHVTTGFGNHLARPILRDEWREDLTFEEGVKLLEKCMRVLLYRDRSAVN 181

Query: 203 KLQIAKITEEGTTISQPYALKTFWGFTAFQNPTAGAEGSW 242
           KLQIAKITEEG TISQPY+LKTFW ++AF+NPT+GAEGSW
Sbjct: 182 KLQIAKITEEGVTISQPYSLKTFWNYSAFENPTSGAEGSW 221

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357500387|ref|XP_003620482.1| Proteasome subunit beta type [Medicago truncatula] gi|355495497|gb|AES76700.1| Proteasome subunit beta type [Medicago truncatula] gi|388498504|gb|AFK37318.1| unknown [Medicago truncatula]

 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 190/225 (84%), Positives = 213/225 (94%)

Query: 18  QRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEIS 77
           QRT  PYVTG+SVVA+KYKDGILMAADMGGSYGST+RYKSVER+KPIGKHSLLGASGEIS
Sbjct: 8   QRTLYPYVTGSSVVAIKYKDGILMAADMGGSYGSTLRYKSVERLKPIGKHSLLGASGEIS 67

Query: 78  DFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNG 137
           DFQE++R LDELIL DNMWDDGNSLGPKE+H+YLTRVMYNRRNKF+PLWNSLVLGGVK G
Sbjct: 68  DFQEIMRYLDELILIDNMWDDGNSLGPKEVHNYLTRVMYNRRNKFNPLWNSLVLGGVKKG 127

Query: 138 QKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRD 197
           QKYLG VSMIGVN+ED+HVATG GNHLARPILRDEW+ENL++E+GVKLLEKCMRVLLYRD
Sbjct: 128 QKYLGTVSMIGVNYEDNHVATGLGNHLARPILRDEWNENLTFEEGVKLLEKCMRVLLYRD 187

Query: 198 RSAVNKLQIAKITEEGTTISQPYALKTFWGFTAFQNPTAGAEGSW 242
           RSAVNK+QI+KITEEG T+  P++LKT+W F+AF+NPT GAEGSW
Sbjct: 188 RSAVNKIQISKITEEGATVYPPFSLKTYWEFSAFKNPTVGAEGSW 232

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	242
TAIR|locus:2010693	246	PBG1 "20S proteasome beta subu	0.929	0.914	0.84	2.8e-105
UNIPROTKB|Q3T108	264	PSMB4 "Proteasome subunit beta	0.917	0.840	0.455	7.2e-52
UNIPROTKB|F1ST02	264	PSMB4 "Proteasome subunit beta	0.871	0.799	0.464	2.4e-51
UNIPROTKB|E2RBR6	264	PSMB4 "Proteasome subunit beta	0.871	0.799	0.455	8.3e-51
UNIPROTKB|P28070	264	PSMB4 "Proteasome subunit beta	0.871	0.799	0.460	8.3e-51
MGI|MGI:1098257	264	Psmb4 "proteasome (prosome, ma	0.871	0.799	0.460	1.1e-50
UNIPROTKB|D4A640	232	Psmb4 "Proteasome subunit beta	0.884	0.922	0.453	1.3e-50
RGD|61877	263	Psmb4 "proteasome (prosome, ma	0.884	0.813	0.453	1.7e-50
UNIPROTKB|P34067	263	Psmb4 "Proteasome subunit beta	0.884	0.813	0.453	1.7e-50
UNIPROTKB|P28024	242	psmb4 "Proteasome subunit beta	0.871	0.871	0.436	2.8e-50

TAIR|locus:2010693 PBG1 "20S proteasome beta subunit G1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1042 (371.9 bits), Expect = 2.8e-105, P = 2.8e-105
 Identities = 189/225 (84%), Positives = 212/225 (94%)

Query:    18 QRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEIS 77
             QRT  PYVTGTS+VA+KYKDG+LMA+DMGGSYGST+RYK++ER+K IGKHSLLGASGEIS
Sbjct:    22 QRTLYPYVTGTSIVAIKYKDGVLMASDMGGSYGSTLRYKNIERVKAIGKHSLLGASGEIS 81

Query:    78 DFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNG 137
             DFQE+LR LDEL L DNMWDDGNSLGPKE+H+YLTRVMYNRRNKF+PLWN+LVLGGVKNG
Sbjct:    82 DFQEILRYLDELTLNDNMWDDGNSLGPKEIHNYLTRVMYNRRNKFNPLWNTLVLGGVKNG 141

Query:   138 QKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRD 197
             + YLGMVSMIGV+FED HVATGFGNHLARPILRDEWH +LS+EDGVKLLEKCMRVLLYRD
Sbjct:   142 KSYLGMVSMIGVSFEDDHVATGFGNHLARPILRDEWHADLSFEDGVKLLEKCMRVLLYRD 201

Query:   198 RSAVNKLQIAKITEEGTTISQPYALKTFWGFTAFQNPTAGAEGSW 242
             RSA+NKLQIAKITEEG T+SQPY+LKT+W F++F NPTAGA GSW
Sbjct:   202 RSAINKLQIAKITEEGVTVSQPYSLKTYWEFSSFHNPTAGAAGSW 246

GO:0004175 "endopeptidase activity" evidence=IEA

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005839 "proteasome core complex" evidence=IEA;TAS

GO:0008233 "peptidase activity" evidence=ISS

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0000502 "proteasome complex" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0043248 "proteasome assembly" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

UNIPROTKB|Q3T108 PSMB4 "Proteasome subunit beta type-4" [Bos taurus (taxid:9913)]

 Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
 Identities = 103/226 (45%), Positives = 156/226 (69%)

Query:     3 SIQAKQGLVGPNDPIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIK 62
             S+     L G   PI RTQ P VTGTSV+ LK++ G+++AADM GSYGS  R++++ RI 
Sbjct:    31 SVDPVSALYG--SPITRTQNPMVTGTSVLGLKFEGGVVIAADMLGSYGSLARFRNISRIM 88

Query:    63 PIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKF 122
              +   ++LGASG+ +DFQ L + L ++++ + +  DG+S  PK +HS+LTR MY+RR+K 
Sbjct:    89 RVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHSYSPKAIHSWLTRAMYSRRSKM 148

Query:   123 DPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRD--EWHENLSYE 180
             +PLWN++V+GG  +G+ +LG V M+GV +E   +ATG+G +LA+P+LR+  E    LS  
Sbjct:   149 NPLWNTMVIGGYADGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQT 208

Query:   181 DGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALKTFW 226
             +  +L+E+CMRVL YRD  + N+ QIA +TE+G  I  P + +T W
Sbjct:   209 EARELVERCMRVLYYRDARSYNRFQIATVTEKGVEIEGPLSAETNW 254

GO:0005839 "proteasome core complex" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0002862 "negative regulation of inflammatory response to antigenic stimulus" evidence=IEA

GO:0001530 "lipopolysaccharide binding" evidence=IEA

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

UNIPROTKB|F1ST02 PSMB4 "Proteasome subunit beta type" [Sus scrofa (taxid:9823)]

 Score = 533 (192.7 bits), Expect = 2.4e-51, P = 2.4e-51
 Identities = 99/213 (46%), Positives = 152/213 (71%)

Query:    16 PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGE 75
             PI RTQ P VTGTSV+ +K++ G+++AADM GSYGS  R++++ RI  +   ++LGASG+
Sbjct:    42 PITRTQNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGD 101

Query:    76 ISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVK 135
              +DFQ L + L ++++ + +  DG+S  PK +HS+LTR MY+RR+K +PLWN++V+GG  
Sbjct:   102 YADFQYLKQVLGQMVIDEELLGDGHSYSPKAIHSWLTRAMYSRRSKMNPLWNTMVIGGYA 161

Query:   136 NGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRD--EWHENLSYEDGVKLLEKCMRVL 193
             +G+ +LG V M+GV +E   +ATG+G +LA+P+LR+  E    LS  +  +L+E+CMRVL
Sbjct:   162 DGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQAEARELVERCMRVL 221

Query:   194 LYRDRSAVNKLQIAKITEEGTTISQPYALKTFW 226
              YRD  + N+ QIA +TE+G  I  P + +T W
Sbjct:   222 YYRDARSYNRFQIATVTEKGVEIEGPLSAETNW 254

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005839 "proteasome core complex" evidence=IEA

GO:0002862 "negative regulation of inflammatory response to antigenic stimulus" evidence=IEA

GO:0001530 "lipopolysaccharide binding" evidence=IEA

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

UNIPROTKB|E2RBR6 PSMB4 "Proteasome subunit beta type" [Canis lupus familiaris (taxid:9615)]

 Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
 Identities = 97/213 (45%), Positives = 152/213 (71%)

Query:    16 PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGE 75
             P+ RTQ P VTGTSV+ +K++ G+++AADM GSYGS  R++++ RI  +   ++LGASG+
Sbjct:    42 PVTRTQNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNDSTMLGASGD 101

Query:    76 ISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVK 135
              +DFQ L + L ++++ + +  DG+S  P+ +HS+LTR MY+RR+K +PLWN++V+GG  
Sbjct:   102 YADFQYLKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYA 161

Query:   136 NGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRD--EWHENLSYEDGVKLLEKCMRVL 193
             +G+ +LG V M+GV +E   +ATG+G +LA+P+LR+  E    LS  +  +L+E+CMRVL
Sbjct:   162 DGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARELVERCMRVL 221

Query:   194 LYRDRSAVNKLQIAKITEEGTTISQPYALKTFW 226
              YRD  + N+ QIA +TE+G  I  P + +T W
Sbjct:   222 YYRDARSYNRFQIATVTEKGVEIEGPLSAETNW 254

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005839 "proteasome core complex" evidence=IEA

GO:0002862 "negative regulation of inflammatory response to antigenic stimulus" evidence=IEA

GO:0001530 "lipopolysaccharide binding" evidence=IEA

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

UNIPROTKB|P28070 PSMB4 "Proteasome subunit beta type-4" [Homo sapiens (taxid:9606)]

 Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
 Identities = 98/213 (46%), Positives = 151/213 (70%)

Query:    16 PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGE 75
             PI RTQ P VTGTSV+ +K++ G+++AADM GSYGS  R++++ RI  +   ++LGASG+
Sbjct:    42 PITRTQNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGD 101

Query:    76 ISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVK 135
              +DFQ L + L ++++ + +  DG+S  P+ +HS+LTR MY+RR+K +PLWN++V+GG  
Sbjct:   102 YADFQYLKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYA 161

Query:   136 NGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRD--EWHENLSYEDGVKLLEKCMRVL 193
             +G+ +LG V M+GV +E   +ATG+G +LA+P+LR+  E    LS  +   L+E+CMRVL
Sbjct:   162 DGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARDLVERCMRVL 221

Query:   194 LYRDRSAVNKLQIAKITEEGTTISQPYALKTFW 226
              YRD  + N+ QIA +TE+G  I  P + +T W
Sbjct:   222 YYRDARSYNRFQIATVTEKGVEIEGPLSTETNW 254

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0001530 "lipopolysaccharide binding" evidence=IEA

GO:0002862 "negative regulation of inflammatory response to antigenic stimulus" evidence=IEA

GO:0005634 "nucleus" evidence=TAS

GO:0005839 "proteasome core complex" evidence=ISS

GO:0000502 "proteasome complex" evidence=TAS

GO:0000075 "cell cycle checkpoint" evidence=TAS

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS

GO:0000084 "S phase of mitotic cell cycle" evidence=TAS

GO:0000209 "protein polyubiquitination" evidence=TAS

GO:0000216 "M/G1 transition of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0002474 "antigen processing and presentation of peptide antigen via MHC class I" evidence=TAS

GO:0002479 "antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006521 "regulation of cellular amino acid metabolic process" evidence=TAS

GO:0006915 "apoptotic process" evidence=TAS

GO:0006977 "DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0042590 "antigen processing and presentation of exogenous peptide antigen via MHC class I" evidence=TAS

GO:0042981 "regulation of apoptotic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0051436 "negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051437 "positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051439 "regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

MGI|MGI:1098257 Psmb4 "proteasome (prosome, macropain) subunit, beta type 4" [Mus musculus (taxid:10090)]

 Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
 Identities = 98/213 (46%), Positives = 151/213 (70%)

Query:    16 PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGE 75
             PI RTQ P VTGTSV+ +K+  G+++AADM GSYGS  R++++ RI  +   ++LGASG+
Sbjct:    42 PITRTQNPMVTGTSVLGVKFDGGVVIAADMLGSYGSLARFRNISRIMRVNDSTMLGASGD 101

Query:    76 ISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVK 135
              +DFQ L + L ++++ + +  DG+S  P+ +HS+LTR MY+RR+K +PLWN++V+GG  
Sbjct:   102 YADFQYLKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYA 161

Query:   136 NGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRD--EWHENLSYEDGVKLLEKCMRVL 193
             +G+ +LG V M+GV +E   +ATG+G +LA+P+LR+  E    LS  +  +L+E+CMRVL
Sbjct:   162 DGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARELVERCMRVL 221

Query:   194 LYRDRSAVNKLQIAKITEEGTTISQPYALKTFW 226
              YRD  + N+ QIA +TE+G  I  P + +T W
Sbjct:   222 YYRDARSYNRFQIATVTEKGVEIEGPLSAQTNW 254

GO:0000502 "proteasome complex" evidence=IEA

GO:0001530 "lipopolysaccharide binding" evidence=IDA

GO:0002862 "negative regulation of inflammatory response to antigenic stimulus" evidence=IMP

GO:0004175 "endopeptidase activity" evidence=IEA

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005839 "proteasome core complex" evidence=IDA

GO:0006508 "proteolysis" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

UNIPROTKB|D4A640 Psmb4 "Proteasome subunit beta type" [Rattus norvegicus (taxid:10116)]

 Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
 Identities = 98/216 (45%), Positives = 151/216 (69%)

Query:    13 PNDPIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGA 72
             P  PI RTQ P VTGTSV+ +K+  G+++AADM GSYGS  R++++ RI  +   ++LGA
Sbjct:     7 PARPITRTQNPMVTGTSVLGVKFDCGVVIAADMLGSYGSLARFRNISRIMRVNDSTMLGA 66

Query:    73 SGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLG 132
             SG+ +DFQ L + L ++++ + +  DG+S  P+ +HS+LTR MY+RR+K +PLWN++V+G
Sbjct:    67 SGDYADFQYLKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIG 126

Query:   133 GVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRD--EWHENLSYEDGVKLLEKCM 190
             G   G+ +LG V M+GV +E   +ATG+G +LA+P+LR+  E    LS  +  +L+E+CM
Sbjct:   127 GYAGGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARELVERCM 186

Query:   191 RVLLYRDRSAVNKLQIAKITEEGTTISQPYALKTFW 226
             RVL YRD  + N+ Q+A +TE+G  I  P + +T W
Sbjct:   187 RVLYYRDARSYNRFQVATVTEKGVEIEGPLSAQTNW 222

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005839 "proteasome core complex" evidence=IEA

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

RGD|61877 Psmb4 "proteasome (prosome, macropain) subunit, beta type 4" [Rattus norvegicus (taxid:10116)]

 Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
 Identities = 98/216 (45%), Positives = 151/216 (69%)

Query:    13 PNDPIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGA 72
             P  PI RTQ P VTGTSV+ +K+  G+++AADM GSYGS  R++++ RI  +   ++LGA
Sbjct:    38 PARPITRTQNPMVTGTSVLGVKFDCGVVIAADMLGSYGSLARFRNISRIMRVNDSTMLGA 97

Query:    73 SGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLG 132
             SG+ +DFQ L + L ++++ + ++ DG+S  P+ +HS+LTR MY+RR+K +PLWN+ V+G
Sbjct:    98 SGDYADFQYLKQVLGQMVIDEELFGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTKVIG 157

Query:   133 GVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRD--EWHENLSYEDGVKLLEKCM 190
             G   G+ +LG V M+GV +E   +ATG+G +LA+P+LR+  E    LS  +  +L+E+CM
Sbjct:   158 GYAGGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARELVERCM 217

Query:   191 RVLLYRDRSAVNKLQIAKITEEGTTISQPYALKTFW 226
             RVL YRD  + N+ Q+A +TE+G  I  P + +T W
Sbjct:   218 RVLYYRDARSYNRFQVATVTEKGVEIEGPLSAQTNW 253

GO:0001530 "lipopolysaccharide binding" evidence=IEA;ISO

GO:0002862 "negative regulation of inflammatory response to antigenic stimulus" evidence=IEA;ISO

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005839 "proteasome core complex" evidence=IEA;ISO;ISS

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

UNIPROTKB|P34067 Psmb4 "Proteasome subunit beta type-4" [Rattus norvegicus (taxid:10116)]

 Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
 Identities = 98/216 (45%), Positives = 151/216 (69%)

Query:    13 PNDPIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGA 72
             P  PI RTQ P VTGTSV+ +K+  G+++AADM GSYGS  R++++ RI  +   ++LGA
Sbjct:    38 PARPITRTQNPMVTGTSVLGVKFDCGVVIAADMLGSYGSLARFRNISRIMRVNDSTMLGA 97

Query:    73 SGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLG 132
             SG+ +DFQ L + L ++++ + ++ DG+S  P+ +HS+LTR MY+RR+K +PLWN+ V+G
Sbjct:    98 SGDYADFQYLKQVLGQMVIDEELFGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTKVIG 157

Query:   133 GVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRD--EWHENLSYEDGVKLLEKCM 190
             G   G+ +LG V M+GV +E   +ATG+G +LA+P+LR+  E    LS  +  +L+E+CM
Sbjct:   158 GYAGGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARELVERCM 217

Query:   191 RVLLYRDRSAVNKLQIAKITEEGTTISQPYALKTFW 226
             RVL YRD  + N+ Q+A +TE+G  I  P + +T W
Sbjct:   218 RVLYYRDARSYNRFQVATVTEKGVEIEGPLSAQTNW 253

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

UNIPROTKB|P28024 psmb4 "Proteasome subunit beta type-4" [Xenopus laevis (taxid:8355)]

 Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
 Identities = 93/213 (43%), Positives = 152/213 (71%)

Query:    16 PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGE 75
             P++ T  P VTGTSV+ +K+  G+++AADM GSYGS  R++++ RI  + ++++LGASG+
Sbjct:    20 PVRHTLNPMVTGTSVLGVKFDGGVIIAADMLGSYGSLARFRNISRIMKVNENTILGASGD 79

Query:    76 ISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVK 135
              +D+Q L + +D++++ + +  DG++  PK +HS+LTRVMYNRR+K +PLWN++V+GG  
Sbjct:    80 YADYQYLKQVIDQMVIDEELVGDGHNYSPKAIHSWLTRVMYNRRSKMNPLWNTVVIGGFY 139

Query:   136 NGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRD--EWHENLSYEDGVKLLEKCMRVL 193
             NG+ +LG V  +GV +E   +ATGFG +LA+P+LR+  E    LS E+  +L+++CM+VL
Sbjct:   140 NGESFLGYVDKLGVAYEAPTIATGFGAYLAQPLLREVTENKATLSKEEARQLVDRCMKVL 199

Query:   194 LYRDRSAVNKLQIAKITEEGTTISQPYALKTFW 226
              YRD  + N+ +I  +TE G  +  P + +T W
Sbjct:   200 YYRDARSYNRFEITTVTESGVEVEGPLSSETNW 232

GO:0005839 "proteasome core complex" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P34067	PSB4_RAT	3, ., 4, ., 2, 5, ., 1	0.4474	0.8966	0.8250	yes	no
Q3T108	PSB4_BOVIN	3, ., 4, ., 2, 5, ., 1	0.4672	0.8760	0.8030	yes	no
Q8SS01	PSB7_ENCCU	3, ., 4, ., 2, 5, ., 1	0.3842	0.8181	0.8425	yes	no
Q9USQ9	PSB7_SCHPO	3, ., 4, ., 2, 5, ., 1	0.4196	0.8925	0.8244	yes	no
Q7DLR9	PSB4_ARATH	3, ., 4, ., 2, 5, ., 1	0.84	0.9297	0.9146	yes	no
Q556Q0	PSB4_DICDI	3, ., 4, ., 2, 5, ., 1	0.4523	0.8595	0.8030	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.25.1	0.979
3rd Layer	3.4.25	0.983

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	242
cd03760	197	cd03760, proteasome_beta_type_4, proteasome beta t	1e-111
cd01912	189	cd01912, proteasome_beta, proteasome beta subunit	2e-58
cd01906	182	cd01906, proteasome_protease_HslV, proteasome_prot	4e-48
pfam00227	188	pfam00227, Proteasome, Proteasome subunit	2e-37
COG0638	236	COG0638, PRE1, 20S proteasome, alpha and beta subu	3e-36
cd01901	164	cd01901, Ntn_hydrolase, The Ntn hydrolases (N-term	2e-30
TIGR03634	185	TIGR03634, arc_protsome_B, proteasome endopeptidas	1e-23
cd03764	188	cd03764, proteasome_beta_archeal, Archeal proteaso	6e-23
cd03758	193	cd03758, proteasome_beta_type_2, proteasome beta t	2e-12
cd03757	212	cd03757, proteasome_beta_type_1, proteasome beta t	2e-11
cd03759	195	cd03759, proteasome_beta_type_3, proteasome beta t	2e-07
cd03762	188	cd03762, proteasome_beta_type_6, proteasome beta t	8e-06
cd03763	189	cd03763, proteasome_beta_type_7, proteasome beta t	3e-05
TIGR03633	224	TIGR03633, arc_protsome_A, proteasome endopeptidas	8e-05
cd03756	211	cd03756, proteasome_alpha_archeal, proteasome_alph	1e-04
TIGR03690	219	TIGR03690, 20S_bact_beta, proteasome, beta subunit	3e-04

>gnl|CDD|239729 cd03760, proteasome_beta_type_4, proteasome beta type-4 subunit

 Score =  318 bits (817), Expect = e-111
 Identities = 112/197 (56%), Positives = 153/197 (77%), Gaps = 3/197 (1%)

Query: 26  TGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRN 85
           TGTSV+A+KYKDG+++AAD  GSYGS  R+K+VERI  +G ++LLGASG+ +DFQ L R 
Sbjct: 1   TGTSVIAIKYKDGVIIAADTLGSYGSLARFKNVERIFKVGDNTLLGASGDYADFQYLKRL 60

Query: 86  LDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKN-GQKYLGMV 144
           LD+L++ D   DDG+SL PKE+HSYLTRV+YNRR+K +PLWN+LV+GGV N G+ +LG V
Sbjct: 61  LDQLVIDDECLDDGHSLSPKEIHSYLTRVLYNRRSKMNPLWNTLVVGGVDNEGEPFLGYV 120

Query: 145 SMIGVNFEDSHVATGFGNHLARPILRDEWHE--NLSYEDGVKLLEKCMRVLLYRDRSAVN 202
            ++G  +ED HVATGFG +LA P+LR+ W +  +L+ E+   L+E+CM+VL YRD  ++N
Sbjct: 121 DLLGTAYEDPHVATGFGAYLALPLLREAWEKKPDLTEEEARALIEECMKVLYYRDARSIN 180

Query: 203 KLQIAKITEEGTTISQP 219
           K QIA +T+EG  I  P
Sbjct: 181 KYQIAVVTKEGVEIEGP 197

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 197

>gnl|CDD|238893 cd01912, proteasome_beta, proteasome beta subunit

 Score =  182 bits (465), Expect = 2e-58
 Identities = 59/190 (31%), Positives = 102/190 (53%), Gaps = 4/190 (2%)

Query: 28  TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLD 87
           T++V +K KDG+++AAD   S GS +  ++ ++I  I  + LLG +G  +D Q L R L 
Sbjct: 1   TTIVGIKGKDGVVLAADTRASAGSLVASRNFDKIFKISDNILLGTAGSAADTQALTRLLK 60

Query: 88  ELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGV-KNGQKYLGMVSM 146
             +    + +    L  K   + L+ ++Y+ R    P + SL++GGV K G  +L  V  
Sbjct: 61  RNLRLYELRNGRE-LSVKAAANLLSNILYSYR--GFPYYVSLIVGGVDKGGGPFLYYVDP 117

Query: 147 IGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQI 206
           +G   E   VATG G+  A  IL   +  +++ E+ V+L++K +   + RD S+   + +
Sbjct: 118 LGSLIEAPFVATGSGSKYAYGILDRGYKPDMTLEEAVELVKKAIDSAIERDLSSGGGVDV 177

Query: 207 AKITEEGTTI 216
           A IT++G   
Sbjct: 178 AVITKDGVEE 187

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 189

>gnl|CDD|238887 cd01906, proteasome_protease_HslV, proteasome_protease_HslV

 Score =  156 bits (397), Expect = 4e-48
 Identities = 52/184 (28%), Positives = 87/184 (47%), Gaps = 4/184 (2%)

Query: 28  TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLD 87
           T++V +K KDG+++AAD   + G  +   +VE+I  I  H     +G  +D Q L+  L 
Sbjct: 1   TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEKIFKIDDHIGCAFAGLAADAQTLVERLR 60

Query: 88  -ELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGV-KNGQKYLGMVS 145
            E  LY   +  G  +  + L   L  ++Y       PL  SL++ GV + G   L  V 
Sbjct: 61  KEAQLYRLRY--GEPIPVEALAKLLANLLYEYTQSLRPLGVSLLVAGVDEEGGPQLYSVD 118

Query: 146 MIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQ 205
             G   E    A G G+  A  IL   +  +++ E+ ++L  K ++  L RD  +   ++
Sbjct: 119 PSGSYIEYKATAIGSGSQYALGILEKLYKPDMTLEEAIELALKALKSALERDLYSGGNIE 178

Query: 206 IAKI 209
           +A I
Sbjct: 179 VAVI 182

This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleophilic threonine that is exposed by post-translational processing of an inactive propeptide. Length = 182

>gnl|CDD|215805 pfam00227, Proteasome, Proteasome subunit

 Score =  129 bits (327), Expect = 2e-37
 Identities = 46/186 (24%), Positives = 86/186 (46%), Gaps = 2/186 (1%)

Query: 26  TGTSVVALKYKDGILMAADMGGSYGSTIRYK-SVERIKPIGKHSLLGASGEISDFQELLR 84
           TGT++V +K KDG+++AAD   + GS +  K +VE+I  I  H  +  +G  +D Q L+ 
Sbjct: 3   TGTTIVGIKGKDGVVLAADKRATRGSKLLSKDTVEKIFKIDDHIGMAFAGLAADAQTLVD 62

Query: 85  NL-DELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGM 143
               E  LY   +    S+   +  +   +       +     + L+ G  ++G  +L  
Sbjct: 63  YARAEAQLYRLRYGRPISVELAKRIADKLQAYTQYSGRRPYGVSLLIAGYDEDGGPHLYS 122

Query: 144 VSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNK 203
           +   G   E    A G G+  A   L   +  +++ E+ V+L  K ++  + RD  +   
Sbjct: 123 IDPSGSVIEYKATAIGSGSQYAYGFLEKLYKPDMTLEEAVELAVKALKEAIERDALSGGN 182

Query: 204 LQIAKI 209
           +++A I
Sbjct: 183 IEVAVI 188

The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria. The second is call beta-proteobacteria proteasome homologue (BPH). Length = 188

>gnl|CDD|223711 COG0638, PRE1, 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]

 Score =  127 bits (322), Expect = 3e-36
 Identities = 57/203 (28%), Positives = 94/203 (46%), Gaps = 4/203 (1%)

Query: 26  TGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRN 85
            GT+ V +K KDG+++AAD   + G  I   +VE+I  I  H  +  +G  +D Q L+R 
Sbjct: 29  GGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKIDDHIGMAIAGLAADAQVLVRY 88

Query: 86  L-DELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMV 144
              E  LY   + +   +  + L   L+ ++        P   SL++ GV +G   L   
Sbjct: 89  ARAEAQLYRLRYGE--PISVEALAKLLSNILQEYTQSGRPYGVSLLVAGVDDGGPRLYST 146

Query: 145 SMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKL 204
              G   E    A G G+  A   L  E+ E+LS E+ ++L  K +R  + RD ++   +
Sbjct: 147 DPSGSYNEYKATAIGSGSQFAYGFLEKEYREDLSLEEAIELAVKALRAAIERDAASGGGI 206

Query: 205 QIAKIT-EEGTTISQPYALKTFW 226
           ++A IT +EG        +K   
Sbjct: 207 EVAVITKDEGFRKLDGEEIKKLL 229

Length = 236

>gnl|CDD|238884 cd01901, Ntn_hydrolase, The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid

 Score =  110 bits (276), Expect = 2e-30
 Identities = 41/165 (24%), Positives = 74/165 (44%), Gaps = 3/165 (1%)

Query: 28  TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLD 87
           ++ VA+K K G+++AAD   S G  +    V +I         G +G  +D Q L+R L 
Sbjct: 1   STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLR 60

Query: 88  ELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMI 147
           E +    +   G  +    L   L +++        P   +L++ GV  G   L  +   
Sbjct: 61  EALQLYRL-RYGEPISVVALAKELAKLLQVYTQGR-PFGVNLIVAGVDEGGGNLYYIDPS 118

Query: 148 GVNFEDS-HVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMR 191
           G   E+   VATG  +  A+ +L   +  +++ E+ V+L  K ++
Sbjct: 119 GPVIENPGAVATGSRSQRAKSLLEKLYKPDMTLEEAVELALKALK 163

N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either the nucleophilic hydroxyl in a Ser or Thr residue or the nucleophilic thiol in a Cys residue. The position of the N-terminal nucleophile in the active site and the mechanism of catalysis are conserved in this family, despite considerable variation in the protein sequences. Length = 164

>gnl|CDD|234287 TIGR03634, arc_protsome_B, proteasome endopeptidase complex, archaeal, beta subunit

 Score = 93.8 bits (234), Expect = 1e-23
 Identities = 58/188 (30%), Positives = 104/188 (55%), Gaps = 5/188 (2%)

Query: 27  GTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNL 86
           GT+ V +K KDG+++AAD   S G+ +  K+ +++  I  +  +  +G + D Q L+R L
Sbjct: 1   GTTTVGIKCKDGVVLAADKRASMGNFVASKNAKKVFQIDDYIAMTIAGSVGDAQSLVRIL 60

Query: 87  D-ELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVS 145
             E  LY+     G  +  K L + L+ ++ +  N+F P    L++GGV     +L  + 
Sbjct: 61  KAEAKLYELRR--GRPMSVKALATLLSNILNS--NRFFPFIVQLLVGGVDEEGPHLYSLD 116

Query: 146 MIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQ 205
             G   ED + ATG G+ +A  +L DE+ E++S E+  KL  + ++  + RD ++ N + 
Sbjct: 117 PAGGIIEDDYTATGSGSPVAYGVLEDEYREDMSVEEAKKLAVRAIKSAIERDVASGNGID 176

Query: 206 IAKITEEG 213
           +A IT++G
Sbjct: 177 VAVITKDG 184

This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 185

>gnl|CDD|239733 cd03764, proteasome_beta_archeal, Archeal proteasome, beta subunit

 Score = 91.5 bits (228), Expect = 6e-23
 Identities = 55/190 (28%), Positives = 101/190 (53%), Gaps = 5/190 (2%)

Query: 28  TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLD 87
           T+ V +  KDG+++AAD   S G+ I  K+V++I  I     +  +G + D Q L+R L 
Sbjct: 1   TTTVGIVCKDGVVLAADKRASMGNFIASKNVKKIFQIDDKIAMTIAGSVGDAQSLVRILK 60

Query: 88  -ELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSM 146
            E  LY+     G  +  K L + L+ ++ +  +K+ P    L++GGV     +L  +  
Sbjct: 61  AEARLYELRR--GRPMSIKALATLLSNILNS--SKYFPYIVQLLIGGVDEEGPHLYSLDP 116

Query: 147 IGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQI 206
           +G   ED + ATG G+  A  +L DE+ E+++ E+  KL  + ++  + RD ++ + + +
Sbjct: 117 LGSIIEDKYTATGSGSPYAYGVLEDEYKEDMTVEEAKKLAIRAIKSAIERDSASGDGIDV 176

Query: 207 AKITEEGTTI 216
             IT++G   
Sbjct: 177 VVITKDGYKE 186

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 188

>gnl|CDD|239727 cd03758, proteasome_beta_type_2, proteasome beta type-2 subunit

 Score = 63.4 bits (155), Expect = 2e-12
 Identities = 41/174 (23%), Positives = 78/174 (44%), Gaps = 26/174 (14%)

Query: 29  SVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISD---FQE-LLR 84
           +++ +K KD +++AAD   +    +     ++I  +  H L+  SGE  D   F E + +
Sbjct: 3   TLIGIKGKDFVILAADTSAARSILVLKDDEDKIYKLSDHKLMACSGEAGDRLQFAEYIQK 62

Query: 85  NLDELILYDNMWDDGNSLGPKELHSYLTRVM--YNRRNKFDPLWNSLVLGGVKNGQK--- 139
           N+  L    N    G  L PK   ++  R +    R     P   +L+L G    +    
Sbjct: 63  NIQ-LYKMRN----GYELSPKAAANFTRRELAESLRSRT--PYQVNLLLAGYDKVEGPSL 115

Query: 140 ----YLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKC 189
               YLG  +++ V +     A G+G +    IL   +  +++ E+ ++L++KC
Sbjct: 116 YYIDYLG--TLVKVPY----AAHGYGAYFCLSILDRYYKPDMTVEEALELMKKC 163

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 193

>gnl|CDD|239726 cd03757, proteasome_beta_type_1, proteasome beta type-1 subunit

 Score = 61.1 bits (149), Expect = 2e-11
 Identities = 46/205 (22%), Positives = 89/205 (43%), Gaps = 20/205 (9%)

Query: 23  PYV-TGTSVVALKYKDGILMAAD--MGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDF 79
           PY   G +V+A+   D  ++A D  +   Y    R     +I  +    +LG+SG  +D 
Sbjct: 3   PYTDNGGTVLAIAGNDFAVIAGDTRLSEGYSILSRDSP--KIFKLTDKCVLGSSGFQADI 60

Query: 80  QELLRNLD-ELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGV-KNG 137
             L + L   + +Y   +     +  + +   L+ ++Y+RR  F P +   +L G+ + G
Sbjct: 61  LALTKRLKARIKMYK--YSHNKEMSTEAIAQLLSTILYSRR--FFPYYVFNILAGIDEEG 116

Query: 138 QKYLGMVSMIGVNFEDSHVATGFGNHLARPIL---------RDEWHENLSYEDGVKLLEK 188
           +  +     +G    +++ A G  + L +P+L          +     LS E+ V L++ 
Sbjct: 117 KGVVYSYDPVGSYERETYSAGGSASSLIQPLLDNQVGRKNQNNVERTPLSLEEAVSLVKD 176

Query: 189 CMRVLLYRDRSAVNKLQIAKITEEG 213
                  RD    + L+I  IT++G
Sbjct: 177 AFTSAAERDIYTGDSLEIVIITKDG 201

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 212

>gnl|CDD|239728 cd03759, proteasome_beta_type_3, proteasome beta type-3 subunit

 Score = 49.9 bits (120), Expect = 2e-07
 Identities = 36/177 (20%), Positives = 82/177 (46%), Gaps = 11/177 (6%)

Query: 26  TGTSVVALKYKDGILMAADMG-GSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLR 84
            G +VVA+  KD + +A+D+  G    T+     +++  IG    +G +G  +D Q L +
Sbjct: 2   NGGAVVAMAGKDCVAIASDLRLGVQQQTVSTD-FQKVFRIGDRLYIGLAGLATDVQTLAQ 60

Query: 85  NLDELILYDNMWD--DGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGV-KNGQKYL 141
            L   +   N++   +   + PK   S ++ ++Y +R  F P +   V+ G+  +G+ ++
Sbjct: 61  KLRFRV---NLYRLREEREIKPKTFSSLISSLLYEKR--FGPYFVEPVVAGLDPDGKPFI 115

Query: 142 GMVSMIG-VNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRD 197
             + +IG  +     V +G  +     +    W  ++  ++  + + + +   + RD
Sbjct: 116 CTMDLIGCPSIPSDFVVSGTASEQLYGMCESLWRPDMEPDELFETISQALLSAVDRD 172

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 195

>gnl|CDD|239731 cd03762, proteasome_beta_type_6, proteasome beta type-6 subunit

 Score = 44.5 bits (106), Expect = 8e-06
 Identities = 35/194 (18%), Positives = 82/194 (42%), Gaps = 15/194 (7%)

Query: 28  TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQ---ELLR 84
           T+++A++Y  G+++ AD   S GS +  +  +++  +        SG  +D Q   + +R
Sbjct: 1   TTIIAVEYDGGVVLGADSRTSTGSYVANRVTDKLTQLHDRIYCCRSGSAADTQAIADYVR 60

Query: 85  NLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGG---VKNGQKYL 141
               L ++     +   +  K   S    + YN +     L   +++ G      GQ Y 
Sbjct: 61  Y--YLDMHSIELGEPPLV--KTAASLFKNLCYNYKEM---LSAGIIVAGWDEQNGGQVYS 113

Query: 142 GMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAV 201
             + + G+         G G+      +   +   ++ E+ +K ++  + + + RD S+ 
Sbjct: 114 --IPLGGMLIRQPFAIGGSGSTYIYGYVDANYKPGMTLEECIKFVKNALSLAMSRDGSSG 171

Query: 202 NKLQIAKITEEGTT 215
             +++  IT++G  
Sbjct: 172 GVIRLVIITKDGVE 185

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 188

>gnl|CDD|239732 cd03763, proteasome_beta_type_7, proteasome beta type-7 subunit

 Score = 43.0 bits (102), Expect = 3e-05
 Identities = 44/205 (21%), Positives = 87/205 (42%), Gaps = 28/205 (13%)

Query: 28  TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLD 87
           T++V + +KDG+++ AD   + G  +  K+ E+I  I  +     +G  +D + +     
Sbjct: 1   TTIVGVVFKDGVVLGADTRATEGPIVADKNCEKIHYIAPNIYCCGAGTAADTEAVTN--- 57

Query: 88  ELILYDNMWDDGNSLGPKELHSY----LTRV-MYNRRNKFDPLWN-------SLVLGGVK 135
             ++  N+          ELH        RV       K   L+        +LVLGGV 
Sbjct: 58  --MISSNL----------ELHRLNTGRKPRVVTALTMLK-QHLFRYQGHIGAALVLGGVD 104

Query: 136 NGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLY 195
               +L  +   G   +   V  G G+  A  +L D +  +++ E+  KL+ + +   ++
Sbjct: 105 YTGPHLYSIYPHGSTDKLPFVTMGSGSLAAMSVLEDRYKPDMTEEEAKKLVCEAIEAGIF 164

Query: 196 RDRSAVNKLQIAKITEEGTTISQPY 220
            D  + + + +  IT++G    + Y
Sbjct: 165 NDLGSGSNVDLCVITKDGVEYLRNY 189

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 189

>gnl|CDD|163366 TIGR03633, arc_protsome_A, proteasome endopeptidase complex, archaeal, alpha subunit

 Score = 42.3 bits (100), Expect = 8e-05
 Identities = 46/196 (23%), Positives = 81/196 (41%), Gaps = 15/196 (7%)

Query: 27  GTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELL--- 83
           GT+ V +K KDG+++A D        +   S+E+I  I  H     SG ++D + L+   
Sbjct: 29  GTTAVGIKTKDGVVLAVDKR-ITSKLVEPSSIEKIFKIDDHIGAATSGLVADARVLIDRA 87

Query: 84  RNLDELILYDNMWDDGNSLGPKELHSYLTRV--MYNRRNKFDPLWNSLVLGGVKNGQKYL 141
           R   ++    N    G  +  + L   +  +   Y +     P   +L++ GV +G   L
Sbjct: 88  RIEAQI----NRLTYGEPIDVETLAKKICDLKQQYTQHGGVRPFGVALLIAGVDDGGPRL 143

Query: 142 GMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVL--LYRDRS 199
                 G   E    A G G       L  E+ E+LS ++ ++L    ++ L     D+ 
Sbjct: 144 FETDPSGALLEYKATAIGAGRQAVTEFLEKEYREDLSLDEAIEL---ALKALYSAVEDKL 200

Query: 200 AVNKLQIAKITEEGTT 215
               +++A IT E   
Sbjct: 201 TPENVEVAYITVEDKK 216

This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 224

>gnl|CDD|239725 cd03756, proteasome_alpha_archeal, proteasome_alpha_archeal

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 42/196 (21%), Positives = 76/196 (38%), Gaps = 23/196 (11%)

Query: 27  GTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELL--- 83
           GT+ + +K K+G+++A D   +    +  +S+E+I  I  H     SG ++D + L+   
Sbjct: 28  GTTALGIKCKEGVVLAVDKRIT-SKLVEPESIEKIYKIDDHVGAATSGLVADARVLIDRA 86

Query: 84  RN--LDELILYDNMWDDGNSLGPKELHSYLTRV------MYNRRNKFDPLWNSLVLGGVK 135
           R       + Y             E    L +        Y +     P   +L++ GV 
Sbjct: 87  RVEAQIHRLTYG-------EPIDVE---VLVKKICDLKQQYTQHGGVRPFGVALLIAGVD 136

Query: 136 NGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLY 195
           +G   L      G   E    A G G       L  E+ E++S E+ ++L  K +     
Sbjct: 137 DGGPRLFETDPSGAYNEYKATAIGSGRQAVTEFLEKEYKEDMSLEEAIELALKAL-YAAL 195

Query: 196 RDRSAVNKLQIAKITE 211
            +      ++IA +T 
Sbjct: 196 EENETPENVEIAYVTV 211

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 211

>gnl|CDD|163402 TIGR03690, 20S_bact_beta, proteasome, beta subunit, bacterial type

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 19/48 (39%), Positives = 31/48 (64%)

Query: 27 GTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASG 74
          GT++VAL Y  G+LMA D   + G+ I  + VE++ P  ++S +G +G
Sbjct: 2  GTTIVALTYPGGVLMAGDRRATQGNMIASRDVEKVYPTDEYSAVGIAG 49

Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 219

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	242
cd03750	227	proteasome_alpha_type_2 proteasome_alpha_type_2. T	100.0
COG0638	236	PRE1 20S proteasome, alpha and beta subunits [Post	100.0
cd03760	197	proteasome_beta_type_4 proteasome beta type-4 subu	100.0
PRK03996	241	proteasome subunit alpha; Provisional	100.0
TIGR03633	224	arc_protsome_A proteasome endopeptidase complex, a	100.0
PTZ00246	253	proteasome subunit alpha; Provisional	100.0
KOG0176	241	consensus 20S proteasome, regulatory subunit alpha	100.0
cd03759	195	proteasome_beta_type_3 proteasome beta type-3 subu	100.0
cd03751	212	proteasome_alpha_type_3 proteasome_alpha_type_3. T	100.0
cd03761	188	proteasome_beta_type_5 proteasome beta type-5 subu	100.0
cd03757	212	proteasome_beta_type_1 proteasome beta type-1 subu	100.0
PTZ00488	247	Proteasome subunit beta type-5; Provisional	100.0
cd03758	193	proteasome_beta_type_2 proteasome beta type-2 subu	100.0
TIGR03634	185	arc_protsome_B proteasome endopeptidase complex, a	100.0
cd03752	213	proteasome_alpha_type_4 proteasome_alpha_type_4. T	100.0
cd03764	188	proteasome_beta_archeal Archeal proteasome, beta s	100.0
cd03755	207	proteasome_alpha_type_7 proteasome_alpha_type_7. T	100.0
cd03756	211	proteasome_alpha_archeal proteasome_alpha_archeal.	100.0
cd03749	211	proteasome_alpha_type_1 proteasome_alpha_type_1. T	100.0
TIGR03690	219	20S_bact_beta proteasome, beta subunit, bacterial	100.0
cd03763	189	proteasome_beta_type_7 proteasome beta type-7 subu	100.0
cd01911	209	proteasome_alpha proteasome alpha subunit. The 20S	100.0
cd03754	215	proteasome_alpha_type_6 proteasome_alpha_type_6. T	100.0
cd03762	188	proteasome_beta_type_6 proteasome beta type-6 subu	100.0
cd03753	213	proteasome_alpha_type_5 proteasome_alpha_type_5. T	100.0
TIGR03691	228	20S_bact_alpha proteasome, alpha subunit, bacteria	100.0
cd01912	189	proteasome_beta proteasome beta subunit. The 20S p	100.0
KOG0181	233	consensus 20S proteasome, regulatory subunit alpha	100.0
cd03765	236	proteasome_beta_bacterial Bacterial proteasome, be	100.0
PF00227	190	Proteasome: Proteasome subunit; InterPro: IPR00135	100.0
KOG0185	256	consensus 20S proteasome, regulatory subunit beta	100.0
KOG0178	249	consensus 20S proteasome, regulatory subunit alpha	100.0
cd01906	182	proteasome_protease_HslV proteasome_protease_HslV.	100.0
KOG0183	249	consensus 20S proteasome, regulatory subunit alpha	100.0
KOG0184	254	consensus 20S proteasome, regulatory subunit alpha	100.0
KOG0179	235	consensus 20S proteasome, regulatory subunit beta	100.0
KOG0175	285	consensus 20S proteasome, regulatory subunit beta	100.0
KOG0177	200	consensus 20S proteasome, regulatory subunit beta	100.0
KOG0182	246	consensus 20S proteasome, regulatory subunit alpha	100.0
KOG0863	264	consensus 20S proteasome, regulatory subunit alpha	100.0
KOG0173	271	consensus 20S proteasome, regulatory subunit beta	100.0
KOG0174	224	consensus 20S proteasome, regulatory subunit beta	100.0
KOG0180	204	consensus 20S proteasome, regulatory subunit beta	100.0
PRK05456	172	ATP-dependent protease subunit HslV; Provisional	100.0
cd01913	171	protease_HslV Protease HslV and the ATPase/chapero	99.98
TIGR03692	171	ATP_dep_HslV ATP-dependent protease HslVU, peptida	99.97
cd01901	164	Ntn_hydrolase The Ntn hydrolases (N-terminal nucle	99.97
COG5405	178	HslV ATP-dependent protease HslVU (ClpYQ), peptida	99.6
COG3484	255	Predicted proteasome-type protease [Posttranslatio	99.32
PF09894	194	DUF2121: Uncharacterized protein conserved in arch	97.24
COG4079	293	Uncharacterized protein conserved in archaea [Func	95.73
KOG3361	157	consensus Iron binding protein involved in Fe-S cl	87.82

>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2

Probab=100.00  E-value=6.7e-49  Score=334.83  Aligned_cols=217  Identities=21%  Similarity=0.289  Sum_probs=203.0

Q ss_pred             ccCCCCCC---CCCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHH
Q 026175            7 KQGLVGPN---DPIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELL   83 (242)
Q Consensus         7 ~~~~~~~~---~~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~   83 (242)
                      ....|.|+   -++||+.+|+++|+|+|||+++||||||+|+|.+ ++++.+++.+||++|++|++|+++|+.+|++.+.
T Consensus         4 ~~t~fsp~Grl~QveyA~~av~~G~t~igik~~dgVvlaad~~~~-~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~   82 (227)
T cd03750           4 SLTTFSPSGKLVQIEYALAAVSSGAPSVGIKAANGVVLATEKKVP-SPLIDESSVHKVEQITPHIGMVYSGMGPDFRVLV   82 (227)
T ss_pred             CCceECCCCeEhHHHHHHHHHHcCCCEEEEEeCCEEEEEEeecCC-ccccCCCCcceEEEEcCCEEEEEeEcHHhHHHHH
Confidence            34568888   4689999999999999999999999999999988 7888888999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH--HhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeEEEccc
Q 026175           84 RNLDELILYDNMWDDGNSLGPKELHSYLTRVM--YNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFG  161 (242)
Q Consensus        84 ~~lr~~~~~~~~~~~g~~i~~~~la~~l~~~~--~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~aiG~g  161 (242)
                      +.+|. .++.|++++|++++++.+++.|++.+  |++++++|||+|++||+|+|+.+|+||++||+|++.+++++|+|+|
T Consensus        83 ~~~r~-~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rP~~v~~li~G~D~~g~~Ly~~d~~G~~~~~~~~a~G~g  161 (227)
T cd03750          83 KKARK-IAQQYYLVYGEPIPVSQLVREIASVMQEYTQSGGVRPFGVSLLIAGWDEGGPYLYQVDPSGSYFTWKATAIGKN  161 (227)
T ss_pred             HHHHH-HHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCCCChheEEEEEEEeCCCCEEEEECCCCCEEeeeEEEECCC
Confidence            99998 47889999999999999999999988  7778889999999999999988999999999999999999999999


Q ss_pred             hHhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCC-CeEEeCCccccccc
Q 026175          162 NHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEE-GTTISQPYALKTFW  226 (242)
Q Consensus       162 ~~~a~~~Le~~~~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~-g~~~~~~~ei~~~~  226 (242)
                      +.+++++||++|+++||++||++++++||+.+.+|+ +++++++|.+|+++ |++.++++||+...
T Consensus       162 ~~~~~~~Le~~~~~~ms~eeai~l~~~~l~~~~~~~-l~~~~iev~iv~~~~~~~~~~~~ei~~~~  226 (227)
T cd03750         162 YSNAKTFLEKRYNEDLELEDAIHTAILTLKEGFEGQ-MTEKNIEIGICGETKGFRLLTPAEIKDYL  226 (227)
T ss_pred             CHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEEECCCCEEECCHHHHHHHh
Confidence            999999999999999999999999999999998876 58899999999995 79999999987643

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3e-48  Score=332.19  Aligned_cols=217  Identities=26%  Similarity=0.318  Sum_probs=201.3

Q ss_pred             CCCCCC---CCCccCccccccC-ceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHH
Q 026175            9 GLVGPN---DPIQRTQLPYVTG-TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLR   84 (242)
Q Consensus         9 ~~~~~~---~~~~~~~~a~~~g-~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~   84 (242)
                      .+|.|+   .+++|+++++.++ +|+|||+++||||||+|+|.+.+.++..++++|||+|+|||+|++||+.+|++.+++
T Consensus         8 ~~fsp~g~l~q~e~a~~a~~~~gtT~vgik~~dgVVlaadkr~t~~~~~~~~~~~Ki~~I~d~i~~~~sG~~aDa~~lv~   87 (236)
T COG0638           8 TIFSPEGRLFQVEYALEAVKRGGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKIDDHIGMAIAGLAADAQVLVR   87 (236)
T ss_pred             eeECCCCchHHHHHHHHHHHcCCceEEEEEecCEEEEEEeccCCCCceecccccceEEEecCCEEEEeccCcHhHHHHHH
Confidence            345555   4778999999875 999999999999999999999888888888999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeEEEccchHh
Q 026175           85 NLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHL  164 (242)
Q Consensus        85 ~lr~~~~~~~~~~~g~~i~~~~la~~l~~~~~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~aiG~g~~~  164 (242)
                      ++|. +++.|++.++++++++.+++++++++|..+..+|||+|++||+|+|+++|+||++||+|++.+++++|+|+|++.
T Consensus        88 ~~r~-~a~~~~~~~~~~i~v~~la~~ls~~l~~~~~~~rP~gv~~iiaG~d~~~p~Ly~~Dp~G~~~~~~~~a~Gsgs~~  166 (236)
T COG0638          88 YARA-EAQLYRLRYGEPISVEALAKLLSNILQEYTQSGRPYGVSLLVAGVDDGGPRLYSTDPSGSYNEYKATAIGSGSQF  166 (236)
T ss_pred             HHHH-HHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCcccceEEEEEEEEcCCCCeEEEECCCCceeecCEEEEcCCcHH
Confidence            9996 589999999999999999999999997764326999999999999988899999999999999999999999999


Q ss_pred             hHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcC-CCeEEeCCccccccc
Q 026175          165 ARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITE-EGTTISQPYALKTFW  226 (242)
Q Consensus       165 a~~~Le~~~~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k-~g~~~~~~~ei~~~~  226 (242)
                      ++++||+.|+++|++|||++++++||+.+.+||..++++++|++|++ +|++.++++++...+
T Consensus       167 a~~~Le~~y~~~m~~eeai~la~~al~~a~~rd~~s~~~~~v~vi~~~~~~~~~~~~~~~~~~  229 (236)
T COG0638         167 AYGFLEKEYREDLSLEEAIELAVKALRAAIERDAASGGGIEVAVITKDEGFRKLDGEEIKKLL  229 (236)
T ss_pred             HHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccccCCCCeEEEEEEcCCCeEEcCHHHHHHHH
Confidence            99999999999999999999999999999999998899999999999 789999999988644

>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit

Probab=100.00  E-value=3.6e-47  Score=317.56  Aligned_cols=194  Identities=58%  Similarity=1.017  Sum_probs=183.3

Q ss_pred             cCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCHH
Q 026175           26 TGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPK  105 (242)
Q Consensus        26 ~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~~  105 (242)
                      .|+|+|||+++||||||+|+|.+.+.++.+++.+|||+|++|++++++|..+|++.+++++|.+...+++++++.+++++
T Consensus         1 ~G~T~igi~~kdgVvlaad~r~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~   80 (197)
T cd03760           1 TGTSVIAIKYKDGVIIAADTLGSYGSLARFKNVERIFKVGDNTLLGASGDYADFQYLKRLLDQLVIDDECLDDGHSLSPK   80 (197)
T ss_pred             CCceEEEEEeCCcEEEEEcCcccccceeecCCCCcEEEecCcEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCCCCCCHH
Confidence            38999999999999999999998889999999999999999999999999999999999999852235777899999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCcceEEEEEEEEC-CcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhhcCC--CCCHHHH
Q 026175          106 ELHSYLTRVMYNRRNKFDPLWNSLVLGGVKN-GQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHE--NLSYEDG  182 (242)
Q Consensus       106 ~la~~l~~~~~~~r~~~rP~~vs~lvaG~D~-~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~--~~s~eea  182 (242)
                      .+++++++.+|++|+++|||+|++|+||+|+ ++|+||++||+|++.+++++|+|+|+.+++++||+.|++  +||+|||
T Consensus        81 ~la~~i~~~~y~~~~~~rP~~v~~iiaG~D~~~gp~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~ms~eea  160 (197)
T cd03760          81 EIHSYLTRVLYNRRSKMNPLWNTLVVGGVDNEGEPFLGYVDLLGTAYEDPHVATGFGAYLALPLLREAWEKKPDLTEEEA  160 (197)
T ss_pred             HHHHHHHHHHHHHhhcCCCceEEEEEEEEcCCCCEEEEEEcCCccEEECCEeEEccHHHHHHHHHHhhcCCCCCCCHHHH
Confidence            9999999999999988999999999999995 899999999999999999999999999999999999999  9999999


Q ss_pred             HHHHHHHHHHHHhcccCCCCcEEEEEEcCCCeEEeCC
Q 026175          183 VKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTISQP  219 (242)
Q Consensus       183 i~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g~~~~~~  219 (242)
                      ++++.+||+.+.+||..++++++|++|+++|++...|
T Consensus       161 ~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g~~~~~~  197 (197)
T cd03760         161 RALIEECMKVLYYRDARSINKYQIAVVTKEGVEIEGP  197 (197)
T ss_pred             HHHHHHHHHHHHHhccccCCceEEEEECCCCEEeCCC
Confidence            9999999999999999999999999999999876543

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>PRK03996 proteasome subunit alpha; Provisional

Probab=100.00  E-value=8.3e-48  Score=330.81  Aligned_cols=217  Identities=21%  Similarity=0.272  Sum_probs=202.1

Q ss_pred             cCCCCCC---CCCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHH
Q 026175            8 QGLVGPN---DPIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLR   84 (242)
Q Consensus         8 ~~~~~~~---~~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~   84 (242)
                      .++|.|+   .++||+.+|+++|+|+|||+++||||||+|+|.+ +.++..++.+||++|+++++++++|..+|++.+++
T Consensus        14 ~~~fsp~Gr~~Q~eya~~av~~G~t~igik~~dgVvlaad~r~~-~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~   92 (241)
T PRK03996         14 ITIFSPDGRLYQVEYAREAVKRGTTAVGVKTKDGVVLAVDKRIT-SPLIEPSSIEKIFKIDDHIGAASAGLVADARVLID   92 (241)
T ss_pred             CceECCCCeEhHHHHHHHHHHhCCCEEEEEeCCEEEEEEeccCC-CcccCCCccceEEEEcCCEEEEEcccHHHHHHHHH
Confidence            5677787   5689999999999999999999999999999998 77878889999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH--HhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeEEEccch
Q 026175           85 NLDELILYDNMWDDGNSLGPKELHSYLTRVM--YNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGN  162 (242)
Q Consensus        85 ~lr~~~~~~~~~~~g~~i~~~~la~~l~~~~--~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~aiG~g~  162 (242)
                      +++. .++.|+++++++++++.+++++++.+  |++++++|||+|++||+|+|+++|+||++||+|++.+++++|+|+|+
T Consensus        93 ~~~~-~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~~~~ilaG~d~~gp~Ly~id~~G~~~~~~~~a~G~g~  171 (241)
T PRK03996         93 RARV-EAQINRLTYGEPIGVETLTKKICDHKQQYTQHGGVRPFGVALLIAGVDDGGPRLFETDPSGAYLEYKATAIGAGR  171 (241)
T ss_pred             HHHH-HHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCccchheEEEEEEEeCCcCEEEEECCCCCeecceEEEECCCc
Confidence            9998 47888899999999999999999987  67777899999999999999888999999999999999999999999


Q ss_pred             HhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCC--eEEeCCcccccccc
Q 026175          163 HLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEG--TTISQPYALKTFWG  227 (242)
Q Consensus       163 ~~a~~~Le~~~~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g--~~~~~~~ei~~~~~  227 (242)
                      ..++++|++.|+++|+++||++++++||+.+.++ ..++++++|++|+++|  ++.++++||+..++
T Consensus       172 ~~~~~~Le~~~~~~~s~eeai~l~~~al~~~~~~-~~~~~~i~i~ii~~~~~~~~~~~~~ei~~~~~  237 (241)
T PRK03996        172 DTVMEFLEKNYKEDLSLEEAIELALKALAKANEG-KLDPENVEIAYIDVETKKFRKLSVEEIEKYLE  237 (241)
T ss_pred             HHHHHHHHHhcccCCCHHHHHHHHHHHHHHHhcc-CCCCCcEEEEEEECCCCcEEECCHHHHHHHHH
Confidence            9999999999999999999999999999999865 6788999999999987  88999999987664

>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit

Probab=100.00  E-value=3.1e-47  Score=323.89  Aligned_cols=214  Identities=21%  Similarity=0.282  Sum_probs=199.2

Q ss_pred             hhccCCCCCC---CCCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHH
Q 026175            5 QAKQGLVGPN---DPIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQE   81 (242)
Q Consensus         5 ~~~~~~~~~~---~~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~   81 (242)
                      |--.++|.|+   .++||+++|+++|+|+|||+++||||||+|+|.+ +.++..++.+||++|++++++++||+.+|++.
T Consensus         4 ~~~~~~f~p~Grl~Qieya~~av~~G~tvigi~~~dgvvlaad~r~~-~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~   82 (224)
T TIGR03633         4 DRAITVFSPDGRLYQVEYAREAVKRGTTAVGIKTKDGVVLAVDKRIT-SKLVEPSSIEKIFKIDDHIGAATSGLVADARV   82 (224)
T ss_pred             CCCCceECCCCeEeHHHHHHHHHHcCCCEEEEEECCEEEEEEeccCC-ccccCCCccceEEEECCCEEEEEeecHHhHHH
Confidence            3345778888   5689999999999999999999999999999998 77877889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH--HhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeEEEc
Q 026175           82 LLRNLDELILYDNMWDDGNSLGPKELHSYLTRVM--YNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATG  159 (242)
Q Consensus        82 l~~~lr~~~~~~~~~~~g~~i~~~~la~~l~~~~--~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~aiG  159 (242)
                      +.+.++.. ++.|+++++++++++.++++|++.+  |++++++|||+|++||+|+|+++|+||++||+|++.+++++|+|
T Consensus        83 l~~~~~~~-~~~~~~~~~~~~~~~~la~~ls~~l~~~~~~~~~rP~~v~~ll~G~d~~~~~Ly~~D~~G~~~~~~~~a~G  161 (224)
T TIGR03633        83 LIDRARIE-AQINRLTYGEPIDVETLAKKICDLKQQYTQHGGVRPFGVALLIAGVDDGGPRLFETDPSGALLEYKATAIG  161 (224)
T ss_pred             HHHHHHHH-HHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCccccceEEEEEEEeCCcCEEEEECCCCCeecceEEEEC
Confidence            99999984 7888899999999999999999987  66777789999999999999889999999999999999999999


Q ss_pred             cchHhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCC--eEEeCCcc
Q 026175          160 FGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEG--TTISQPYA  221 (242)
Q Consensus       160 ~g~~~a~~~Le~~~~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g--~~~~~~~e  221 (242)
                      +|+.+++++|+++|+++|+.+||++++++||+.+.+ |..++++++|++|+++|  ++.++++|
T Consensus       162 ~g~~~~~~~L~~~~~~~~~~eeai~l~~~al~~~~~-d~~~~~~i~i~ii~~~g~~~~~~~~~~  224 (224)
T TIGR03633       162 AGRQAVTEFLEKEYREDLSLDEAIELALKALYSAVE-DKLTPENVEVAYITVEDKKFRKLSVEE  224 (224)
T ss_pred             CCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhc-ccCCCCcEEEEEEEcCCCcEEECCCCC
Confidence            999999999999999999999999999999999987 88999999999999988  78888775

This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.

>PTZ00246 proteasome subunit alpha; Provisional

Probab=100.00  E-value=2.1e-47  Score=330.52  Aligned_cols=223  Identities=17%  Similarity=0.206  Sum_probs=204.1

Q ss_pred             hhccCCCCCC---CCCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHH
Q 026175            5 QAKQGLVGPN---DPIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQE   81 (242)
Q Consensus         5 ~~~~~~~~~~---~~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~   81 (242)
                      |-...+|.|+   -++||+++|+++|+|+|||+++||||||+|+|.+.+.++..++.+|||+|+++++++++|+.+|++.
T Consensus         6 d~~~~~fsp~Grl~QvEYA~~av~~g~t~Igik~~dgVvlaad~r~s~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~   85 (253)
T PTZ00246          6 DSRTTTFSPEGRLYQVEYALEAINNASLTVGILCKEGVILGADKPISSKLLDPGKINEKIYKIDSHIFCAVAGLTADANI   85 (253)
T ss_pred             CCCCceECCCCEEhHHHHHHHHHHhCCCEEEEEECCEEEEEEecCCCCcCccCCCCcccEEEecCCEEEEEEEcHHHHHH
Confidence            3445678888   4789999999999999999999999999999998766665567899999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH--HhhcCCCCCcceEEEEEEEE-CCcEEEEEECCCCceeeeCeEEE
Q 026175           82 LLRNLDELILYDNMWDDGNSLGPKELHSYLTRVM--YNRRNKFDPLWNSLVLGGVK-NGQKYLGMVSMIGVNFEDSHVAT  158 (242)
Q Consensus        82 l~~~lr~~~~~~~~~~~g~~i~~~~la~~l~~~~--~~~r~~~rP~~vs~lvaG~D-~~~p~Ly~idp~G~~~~~~~~ai  158 (242)
                      +.+.+|.. ++.|++.++++++++.+++.++..+  |++++++|||+|++||+||| +++|+||++||+|++.+++++|+
T Consensus        86 l~~~~r~~-~~~~~~~~~~~~~v~~l~~~l~~~~q~~~~~~~~rP~~v~~li~G~D~~~gp~Ly~~D~~Gs~~~~~~~a~  164 (253)
T PTZ00246         86 LINQCRLY-AQRYRYTYGEPQPVEQLVVQICDLKQSYTQFGGLRPFGVSFLFAGYDENLGYQLYHTDPSGNYSGWKATAI  164 (253)
T ss_pred             HHHHHHHH-HHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccCCEEEEEEEEeCCCCcEEEEECCCCCEecceEEEE
Confidence            99999974 7778889999999999999999765  77777899999999999999 58899999999999999999999


Q ss_pred             ccchHhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCC------eEEeCCccccccccc
Q 026175          159 GFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEG------TTISQPYALKTFWGF  228 (242)
Q Consensus       159 G~g~~~a~~~Le~~~~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g------~~~~~~~ei~~~~~~  228 (242)
                      |+|+.+++++|+++|+++|+++||++++++||+.+..+|..++++++|++|+++|      ++.++++||++...-
T Consensus       165 G~gs~~~~~~Le~~~~~~ms~eeai~l~~~al~~~~~~d~~s~~~vev~ii~~~~~~~~~~~~~l~~~ei~~~l~~  240 (253)
T PTZ00246        165 GQNNQTAQSILKQEWKEDLTLEQGLLLAAKVLTKSMDSTSPKADKIEVGILSHGETDGEPIQKMLSEKEIAELLKK  240 (253)
T ss_pred             CCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCcCCCCCeEECCHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999875      789999999986643

>KOG0176 consensus 20S proteasome, regulatory subunit alpha type PSMA5/PUP2 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=8.1e-48  Score=309.47  Aligned_cols=218  Identities=18%  Similarity=0.279  Sum_probs=202.5

Q ss_pred             hhccCCCCCCC---CCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHH
Q 026175            5 QAKQGLVGPND---PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQE   81 (242)
Q Consensus         5 ~~~~~~~~~~~---~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~   81 (242)
                      |.--|+|.|++   +|||+.+|++.|+|.|||+.++|||||++||++ ++|+.++++.||++|++||+|++||+.+|++.
T Consensus         9 drgVNTfSpEGRlfQVEYaieAikLGsTaIGv~TkEgVvL~vEKrit-SpLm~p~sveKi~eid~HIgca~SGl~aDarT   87 (241)
T KOG0176|consen    9 DRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRIT-SPLMEPSSVEKIVEIDDHIGCAMSGLIADART   87 (241)
T ss_pred             cccccccCCCceeeehhhHHHHHhcCCceeeeeccceEEEEEecccc-CcccCchhhhhheehhhceeeeccccccchHH
Confidence            34458999996   689999999999999999999999999999999 89999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH--Hhh-----cCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeC
Q 026175           82 LLRNLDELILYDNMWDDGNSLGPKELHSYLTRVM--YNR-----RNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDS  154 (242)
Q Consensus        82 l~~~lr~~~~~~~~~~~g~~i~~~~la~~l~~~~--~~~-----r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~  154 (242)
                      ++++.|. +++.|++.|+++++++.+.+.+|++.  |..     +..-|||||++|+||+|+.+|+||+.||+|++..++
T Consensus        88 lve~arv-~~qnh~f~Y~e~i~VEs~tq~v~~LaLrFGe~~~~~~~msRPFGValliAG~D~~gpqL~h~dPSGtf~~~~  166 (241)
T KOG0176|consen   88 LVERARV-ETQNHWFTYGEPISVESLTQAVSDLALRFGEGDDEEAIMSRPFGVALLIAGHDETGPQLYHLDPSGTFIRYK  166 (241)
T ss_pred             HHHHHHH-HhhhceeecCCcccHHHHHHHHHHHHhHhCCCcchhhhhcCCcceEEEEeeccCCCceEEEeCCCCceEEec
Confidence            9999998 58999999999999999999999875  432     334599999999999999999999999999999999


Q ss_pred             eEEEccchHhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCC-CeEEeCCcccccc
Q 026175          155 HVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEE-GTTISQPYALKTF  225 (242)
Q Consensus       155 ~~aiG~g~~~a~~~Le~~~~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~-g~~~~~~~ei~~~  225 (242)
                      +-|+|+|+.-+.+.|++.|+++|+++||+.+++..|+.+++ +.++.+|++|.+|+++ ++++++++|++..
T Consensus       167 AKAIGSgsEga~~~L~~e~~~~ltL~ea~~~~L~iLkqVMe-eKl~~~Nvev~~vt~e~~f~~~t~EE~~~~  237 (241)
T KOG0176|consen  167 AKAIGSGSEGAESSLQEEYHKDLTLKEAEKIVLKILKQVME-EKLNSNNVEVAVVTPEGEFHIYTPEEVEQV  237 (241)
T ss_pred             ceeccccchHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHH-HhcCccceEEEEEcccCceEecCHHHHHHH
Confidence            99999999999999999999999999999999999999996 5678889999999998 5999999998754

>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit

Probab=100.00  E-value=6.9e-46  Score=309.41  Aligned_cols=189  Identities=20%  Similarity=0.324  Sum_probs=177.8

Q ss_pred             cCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCHH
Q 026175           26 TGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPK  105 (242)
Q Consensus        26 ~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~~  105 (242)
                      +|+|+|||+++||||||+|+|.+.+.++..++.+|||+|++|++++++|..+|++.+.+++|.+ ++.|+++++.+++++
T Consensus         2 ~G~t~igik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~-~~~~~~~~~~~~~~~   80 (195)
T cd03759           2 NGGAVVAMAGKDCVAIASDLRLGVQQQTVSTDFQKVFRIGDRLYIGLAGLATDVQTLAQKLRFR-VNLYRLREEREIKPK   80 (195)
T ss_pred             CCceEEEEEcCCEEEEEEccccccCCEeEecCCCeEEEeCCCEEEEccchHHHHHHHHHHHHHH-HHHHHHHhCCCCCHH
Confidence            6999999999999999999999866655577899999999999999999999999999999984 788999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCcceEEEEEEEE-CCcEEEEEECCCCceeeeC-eEEEccchHhhHHHHhhhcCCCCCHHHHH
Q 026175          106 ELHSYLTRVMYNRRNKFDPLWNSLVLGGVK-NGQKYLGMVSMIGVNFEDS-HVATGFGNHLARPILRDEWHENLSYEDGV  183 (242)
Q Consensus       106 ~la~~l~~~~~~~r~~~rP~~vs~lvaG~D-~~~p~Ly~idp~G~~~~~~-~~aiG~g~~~a~~~Le~~~~~~~s~eeai  183 (242)
                      .+|++|++.+|++|  ++||+|++||+|+| +++|+||++||+|++.+++ ++|+|+|+++++++||+.|+++||.+||+
T Consensus        81 ~la~~l~~~ly~~r--~~P~~v~~ii~G~D~~~~p~Ly~~D~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~  158 (195)
T cd03759          81 TFSSLISSLLYEKR--FGPYFVEPVVAGLDPDGKPFICTMDLIGCPSIPSDFVVSGTASEQLYGMCESLWRPDMEPDELF  158 (195)
T ss_pred             HHHHHHHHHHHHhc--CCCceEEEEEEEEcCCCCEEEEEEcCCCcccccCCEEEEcccHHHHHHHHHhccCCCCCHHHHH
Confidence            99999999999987  58999999999999 5679999999999998877 89999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcccCCCCcEEEEEEcCCCeEEe
Q 026175          184 KLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTIS  217 (242)
Q Consensus       184 ~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g~~~~  217 (242)
                      +++++||+.+.+||..++++++|++|+++|++..
T Consensus       159 ~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g~~~~  192 (195)
T cd03759         159 ETISQALLSAVDRDALSGWGAVVYIITKDKVTTR  192 (195)
T ss_pred             HHHHHHHHHHHhhCcccCCceEEEEEcCCcEEEE
Confidence            9999999999999999999999999999997643

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3

Probab=100.00  E-value=2.1e-46  Score=316.32  Aligned_cols=203  Identities=18%  Similarity=0.229  Sum_probs=188.1

Q ss_pred             hhccCCCCCC---CCCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHH
Q 026175            5 QAKQGLVGPN---DPIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQE   81 (242)
Q Consensus         5 ~~~~~~~~~~---~~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~   81 (242)
                      |-....|.|+   .++||+.+|+++|+|+|||+++||||||+|+|.+ +.++.+++.+|||+|++|++++++|+.+|++.
T Consensus         5 d~~~t~fsp~Grl~Qveya~~a~~~G~tvIgik~kdgVvla~d~r~~-~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~   83 (212)
T cd03751           5 DLSASTFSPDGRVFQVEYANKAVENSGTAIGIRCKDGVVLAVEKLVT-SKLYEPGSNKRIFNVDRHIGIAVAGLLADGRH   83 (212)
T ss_pred             cCCCceECCCCcchHHHHHHHHHhcCCCEEEEEeCCEEEEEEEcccc-ccccCcchhcceeEecCcEEEEEEEChHhHHH
Confidence            4455678888   5789999999999999999999999999999987 57777788999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH--HhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeEEEc
Q 026175           82 LLRNLDELILYDNMWDDGNSLGPKELHSYLTRVM--YNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATG  159 (242)
Q Consensus        82 l~~~lr~~~~~~~~~~~g~~i~~~~la~~l~~~~--~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~aiG  159 (242)
                      +++++|. .++.|+++++++++++.+++.|++.+  |++++++|||+|++||+|+|+++|+||++||+|++.+++++|+|
T Consensus        84 l~~~~r~-~~~~y~~~~~~~~~v~~la~~ls~~~~~~t~~~~~rP~~vs~li~G~D~~gp~Ly~~D~~Gs~~~~~~~a~G  162 (212)
T cd03751          84 LVSRARE-EAENYRDNYGTPIPVKVLADRVAMYMHAYTLYSSVRPFGCSVLLGGYDSDGPQLYMIEPSGVSYGYFGCAIG  162 (212)
T ss_pred             HHHHHHH-HHHHHHHHHCCCCCHHHHHHHHHHHHHHhccCCCcCCceEEEEEEEEeCCcCEEEEECCCCCEEeeEEEEEC
Confidence            9999998 48889999999999999999999876  67777799999999999999889999999999999999999999


Q ss_pred             cchHhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEE
Q 026175          160 FGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKI  209 (242)
Q Consensus       160 ~g~~~a~~~Le~~~~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii  209 (242)
                      +|+.+++++||++|+++||++||+++++++|+.+.+.+.....+|||.++
T Consensus       163 ~g~~~a~~~Lek~~~~dms~eeai~l~~~~L~~~~~~~~~~~~~iei~~~  212 (212)
T cd03751         163 KGKQAAKTELEKLKFSELTCREAVKEAAKIIYIVHDEIKDKAFELELSWV  212 (212)
T ss_pred             CCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhhccCCCCccEEEEEC
Confidence            99999999999999999999999999999999999766677889998874

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit

Probab=100.00  E-value=1.5e-45  Score=305.72  Aligned_cols=187  Identities=19%  Similarity=0.214  Sum_probs=179.5

Q ss_pred             ceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 026175           28 TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKEL  107 (242)
Q Consensus        28 ~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~~~l  107 (242)
                      +|+|||+++||||||+|+|.+.+.++.+++.+|||+|++|++++++|+.+|++.+++++|. +++.|+++++++++++.+
T Consensus         1 tT~igi~~kdgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~-~~~~y~~~~~~~i~~~~l   79 (188)
T cd03761           1 TTTLAFIFQGGVIVAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCQYWERVLGR-ECRLYELRNKERISVAAA   79 (188)
T ss_pred             CcEEEEEECCEEEEEEcCCccCCcEEEcCCcceEEEccCcEEEEeCccHHHHHHHHHHHHH-HHHHHHHHHCCCCCHHHH
Confidence            6899999999999999999998888888999999999999999999999999999999998 488999999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhhcCCCCCHHHHHHHHH
Q 026175          108 HSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLE  187 (242)
Q Consensus       108 a~~l~~~~~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eeai~l~~  187 (242)
                      |+++++.+|..|  ..||+|++||+|+|+++|+||++||+|++.+++++|+|+|+.+++++||+.|+++||.+||++++.
T Consensus        80 a~~ls~~l~~~~--~~~~~v~~li~G~D~~g~~L~~~dp~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~  157 (188)
T cd03761          80 SKLLSNMLYQYK--GMGLSMGTMICGWDKTGPGLYYVDSDGTRLKGDLFSVGSGSTYAYGVLDSGYRYDLSVEEAYDLAR  157 (188)
T ss_pred             HHHHHHHHHhcC--CCCeEEEEEEEEEeCCCCEEEEEcCCceEEEcCeEEEcccHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence            999999998887  469999999999998899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcccCCCCcEEEEEEcCCCeEEe
Q 026175          188 KCMRVLLYRDRSAVNKLQIAKITEEGTTIS  217 (242)
Q Consensus       188 ~~l~~~~~~d~~s~~~i~v~ii~k~g~~~~  217 (242)
                      +||+.+.+||..++++++|++|+++|++.+
T Consensus       158 ~~l~~~~~rd~~sg~~~~v~ii~~~g~~~~  187 (188)
T cd03761         158 RAIYHATHRDAYSGGNVNLYHVREDGWRKI  187 (188)
T ss_pred             HHHHHHHHhcccCCCCeEEEEEcCCceEEc
Confidence            999999999999999999999999998764

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit

Probab=100.00  E-value=1.8e-45  Score=310.64  Aligned_cols=194  Identities=24%  Similarity=0.360  Sum_probs=182.5

Q ss_pred             ccccc-cCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcC
Q 026175           21 QLPYV-TGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDG   99 (242)
Q Consensus        21 ~~a~~-~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g   99 (242)
                      |+|+. +|+|+|||+++||||||+|+|.+.+.++.+++.+|||+|++|++++++|..+|++.+.+++|.+ ++.|++++|
T Consensus         1 ~~~~~~~G~Tvigik~~dgVvlaaD~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~-~~~~~~~~g   79 (212)
T cd03757           1 FSPYTDNGGTVLAIAGNDFAVIAGDTRLSEGYSILSRDSPKIFKLTDKCVLGSSGFQADILALTKRLKAR-IKMYKYSHN   79 (212)
T ss_pred             CCCccCCCccEEEEEcCCEEEEEECCccccCCEeEeCCCCeEEEcCCCEEEEccchHHHHHHHHHHHHHH-HHHHhHHhC
Confidence            45654 8999999999999999999999988778789999999999999999999999999999999984 889999999


Q ss_pred             CCCCHHHHHHHHHHHHHhhcCCCCCcceEEEEEEEE-CCcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhhcC----
Q 026175          100 NSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVK-NGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWH----  174 (242)
Q Consensus       100 ~~i~~~~la~~l~~~~~~~r~~~rP~~vs~lvaG~D-~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~----  174 (242)
                      ++++++.+++++++.+|++|  ++||+|++||||+| +++|+||++||+|++.+++++|+|+|+.+++++||+.|+    
T Consensus        80 ~~i~~~~la~~ls~~ly~~R--~~P~~~~~iiaG~D~~~~p~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~  157 (212)
T cd03757          80 KEMSTEAIAQLLSTILYSRR--FFPYYVFNILAGIDEEGKGVVYSYDPVGSYERETYSAGGSASSLIQPLLDNQVGRKNQ  157 (212)
T ss_pred             CCCCHHHHHHHHHHHHHhhc--CCCeEEEEEEEEEcCCCCEEEEEEcCccCeeecCEEEEeecHHHHHHHHHHHHHhhcc
Confidence            99999999999999999987  58999999999999 567999999999999999999999999999999999985    


Q ss_pred             -----CCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCeEEe
Q 026175          175 -----ENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTIS  217 (242)
Q Consensus       175 -----~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g~~~~  217 (242)
                           ++||++||++++.+||+.+.+||+.++++++|++|+++|++..
T Consensus       158 ~~~~~~~ms~eea~~l~~~~l~~~~~rd~~sg~~i~i~iit~~g~~~~  205 (212)
T cd03757         158 NNVERTPLSLEEAVSLVKDAFTSAAERDIYTGDSLEIVIITKDGIEEE  205 (212)
T ss_pred             CcCCCCCCCHHHHHHHHHHHHHHHHHhCcccCCCEEEEEEcCCCEEEE
Confidence                 8999999999999999999999999999999999999997643

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>PTZ00488 Proteasome subunit beta type-5; Provisional

Probab=100.00  E-value=1.2e-45  Score=317.89  Aligned_cols=203  Identities=18%  Similarity=0.210  Sum_probs=191.5

Q ss_pred             ccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCC
Q 026175           23 PYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSL  102 (242)
Q Consensus        23 a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i  102 (242)
                      ++.+|+|+|||+++||||||+|+|.+.+.++.+++.+|||+|++|++++++|+.+|++.+.+++|. .++.|++++|+++
T Consensus        35 ~~~~G~T~IgIk~kdgVvlAaD~r~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~-~~~~y~~~~g~~i  113 (247)
T PTZ00488         35 EFAHGTTTLAFKYGGGIIIAVDSKATAGPYIASQSVKKVIEINPTLLGTMAGGAADCSFWERELAM-QCRLYELRNGELI  113 (247)
T ss_pred             ccCCCceEEEEEeCCEEEEEEecCcccCCEEEcCCcCceEEcCCCEEEEeCcCHHHHHHHHHHHHH-HHHHHHHHHCCCC
Confidence            678999999999999999999999998899999999999999999999999999999999999998 4788999999999


Q ss_pred             CHHHHHHHHHHHHHhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhhcCCCCCHHHH
Q 026175          103 GPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDG  182 (242)
Q Consensus       103 ~~~~la~~l~~~~~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea  182 (242)
                      +++.+|++|++.+|..|.  .|+.+++|+||+|+++|+||++||+|++.+++++|+|+|+.+++++||+.|+++||.+||
T Consensus       114 sv~~la~~ls~~l~~~R~--~~~~v~~iiaG~D~~gp~Ly~vDp~Gs~~~~~~~a~G~gs~~~~~~Le~~~k~dms~eEa  191 (247)
T PTZ00488        114 SVAAASKILANIVWNYKG--MGLSMGTMICGWDKKGPGLFYVDNDGTRLHGNMFSCGSGSTYAYGVLDAGFKWDLNDEEA  191 (247)
T ss_pred             CHHHHHHHHHHHHHhcCC--CCeeEEEEEEEEeCCCCEEEEEcCCcceeecCCEEEccCHHHHHHHHHhcCcCCCCHHHH
Confidence            999999999999988752  255556899999988899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccCCCCcEEEEEEcCCCeEEeCCccccccccc
Q 026175          183 VKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALKTFWGF  228 (242)
Q Consensus       183 i~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g~~~~~~~ei~~~~~~  228 (242)
                      ++++++||+.+.+||..++++++|++|+++|++.++++||+.+.+-
T Consensus       192 i~l~~kal~~~~~Rd~~sg~~~ei~iI~k~g~~~l~~~ei~~~l~~  237 (247)
T PTZ00488        192 QDLGRRAIYHATFRDAYSGGAINLYHMQKDGWKKISADDCFDLHQK  237 (247)
T ss_pred             HHHHHHHHHHHHHhccccCCCeEEEEEcCCccEECCHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999987653

>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit

Probab=100.00  E-value=3.7e-45  Score=304.60  Aligned_cols=188  Identities=20%  Similarity=0.344  Sum_probs=178.0

Q ss_pred             ceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 026175           28 TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKEL  107 (242)
Q Consensus        28 ~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~~~l  107 (242)
                      +|+|||+++||||||+|+|.+.+.++.+++++|||+|+++++++++|..+|++.+.+++|. +++.|++.++++++++.+
T Consensus         2 ~t~igi~~~dgVvlaad~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~-~~~~~~~~~~~~i~~~~l   80 (193)
T cd03758           2 ETLIGIKGKDFVILAADTSAARSILVLKDDEDKIYKLSDHKLMACSGEAGDRLQFAEYIQK-NIQLYKMRNGYELSPKAA   80 (193)
T ss_pred             ceEEEEEeCCEEEEEEcCccccCcEEEecCcccEEEeCCCeEEEEccchHHHHHHHHHHHH-HHHHHHHHhCCCCCHHHH
Confidence            7999999999999999999988898999999999999999999999999999999999998 488899999999999999


Q ss_pred             HHHHHHHHHhh-cCCCCCcceEEEEEEEEC-CcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhhcCCCCCHHHHHHH
Q 026175          108 HSYLTRVMYNR-RNKFDPLWNSLVLGGVKN-GQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKL  185 (242)
Q Consensus       108 a~~l~~~~~~~-r~~~rP~~vs~lvaG~D~-~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eeai~l  185 (242)
                      ++++++.+|.+ |.. |||+|++|++|+|+ ++|+||++||+|++.+++++|+|+|+.+++++||+.|+++||.+||+++
T Consensus        81 a~~l~~~~~~~~~~~-rP~~~~~li~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~ms~eeai~l  159 (193)
T cd03758          81 ANFTRRELAESLRSR-TPYQVNLLLAGYDKVEGPSLYYIDYLGTLVKVPYAAHGYGAYFCLSILDRYYKPDMTVEEALEL  159 (193)
T ss_pred             HHHHHHHHHHHhhcC-CCeEEEEEEEEEcCCCCcEEEEECCCcceEECCeeEEeecHHHHHHHHHhccCCCCCHHHHHHH
Confidence            99999988543 333 79999999999994 8899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcccCCCCcEEEEEEcCCCeEEe
Q 026175          186 LEKCMRVLLYRDRSAVNKLQIAKITEEGTTIS  217 (242)
Q Consensus       186 ~~~~l~~~~~~d~~s~~~i~v~ii~k~g~~~~  217 (242)
                      +.+||+.+.+||+.++++++|++|+++|++.+
T Consensus       160 ~~~a~~~~~~rd~~~~~~i~i~ii~~~g~~~~  191 (193)
T cd03758         160 MKKCIKELKKRFIINLPNFTVKVVDKDGIRDL  191 (193)
T ss_pred             HHHHHHHHHHhccccCCceEEEEEcCCCeEeC
Confidence            99999999999999999999999999998754

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit

Probab=100.00  E-value=4.9e-45  Score=301.65  Aligned_cols=185  Identities=30%  Similarity=0.439  Sum_probs=178.2

Q ss_pred             CceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCHHH
Q 026175           27 GTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKE  106 (242)
Q Consensus        27 g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~~~  106 (242)
                      |+|+|||+++||||||+|+|.+.+.++.+++.+|||+|+++++++++|..+|++.+.+++|.+ ++.|+++++++++++.
T Consensus         1 G~t~igi~~~dgVvla~d~~~~~~~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~-~~~~~~~~~~~~~~~~   79 (185)
T TIGR03634         1 GTTTVGIKCKDGVVLAADKRASMGNFVASKNAKKVFQIDDYIAMTIAGSVGDAQSLVRILKAE-AKLYELRRGRPMSVKA   79 (185)
T ss_pred             CCcEEEEEeCCEEEEEEcCcccCCCEEecCCcccEEEcCCCEEEEcCchHHHHHHHHHHHHHH-HHHHHHHHCCCCCHHH
Confidence            789999999999999999999989999999999999999999999999999999999999984 7888889999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhhcCCCCCHHHHHHHH
Q 026175          107 LHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLL  186 (242)
Q Consensus       107 la~~l~~~~~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eeai~l~  186 (242)
                      ++++|++.+|..+  +|||+|++|++|+|+++|+||++||+|++.+++++|+|+|+.+++++||+.|+++||++||++++
T Consensus        80 ~a~~l~~~~~~~~--~rP~~v~~ivaG~d~~g~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~  157 (185)
T TIGR03634        80 LATLLSNILNSNR--FFPFIVQLLVGGVDEEGPHLYSLDPAGGIIEDDYTATGSGSPVAYGVLEDEYREDMSVEEAKKLA  157 (185)
T ss_pred             HHHHHHHHHHhcC--CCCeEEEEEEEEEeCCCCEEEEECCCCCeEECCEEEEcCcHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence            9999999998774  79999999999999889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccCCCCcEEEEEEcCCCe
Q 026175          187 EKCMRVLLYRDRSAVNKLQIAKITEEGT  214 (242)
Q Consensus       187 ~~~l~~~~~~d~~s~~~i~v~ii~k~g~  214 (242)
                      .+||+.+.+||..++++++|++|+++|+
T Consensus       158 ~~~l~~~~~r~~~~~~~~~v~ii~~~g~  185 (185)
T TIGR03634       158 VRAIKSAIERDVASGNGIDVAVITKDGV  185 (185)
T ss_pred             HHHHHHHHHhcccCCCCEEEEEEcCCCC
Confidence            9999999999999999999999999984

This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.

>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4

Probab=100.00  E-value=1.7e-45  Score=311.05  Aligned_cols=202  Identities=17%  Similarity=0.214  Sum_probs=187.5

Q ss_pred             ccCCCCCC---CCCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHH
Q 026175            7 KQGLVGPN---DPIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELL   83 (242)
Q Consensus         7 ~~~~~~~~---~~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~   83 (242)
                      -..+|.|+   .++||+++|+++|+|+|||+++||||||+|+|.+.+.++..++.+|||+|++|+++++||..+|++.+.
T Consensus         6 ~~~~fsp~Grl~Qveya~~a~~~G~t~igi~~~dgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~   85 (213)
T cd03752           6 RTTIFSPEGRLYQVEYAMEAISHAGTCLGILAKDGIVLAAEKKVTSKLLDQSFSSEKIYKIDDHIACAVAGITSDANILI   85 (213)
T ss_pred             CCceECCCCEEhHHHhHHHHHhcCCCEEEEEeCCEEEEEEEeccCCcccCCCcCcceEEEecCCEEEEEecChHhHHHHH
Confidence            34678888   467999999999999999999999999999999866555556999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH--HhhcCCCCCcceEEEEEEEE-CCcEEEEEECCCCceeeeCeEEEcc
Q 026175           84 RNLDELILYDNMWDDGNSLGPKELHSYLTRVM--YNRRNKFDPLWNSLVLGGVK-NGQKYLGMVSMIGVNFEDSHVATGF  160 (242)
Q Consensus        84 ~~lr~~~~~~~~~~~g~~i~~~~la~~l~~~~--~~~r~~~rP~~vs~lvaG~D-~~~p~Ly~idp~G~~~~~~~~aiG~  160 (242)
                      +++|.. ++.|+++++++++++.+++.|+..+  |++.+++|||+|++|++|+| +.+|+||.+||+|++.+++++|+|+
T Consensus        86 ~~~r~~-~~~~~~~~~~~i~v~~la~~ls~~~~~~t~~~~~RP~~v~~li~G~D~~~g~~ly~~d~~G~~~~~~~~a~G~  164 (213)
T cd03752          86 NYARLI-AQRYLYSYQEPIPVEQLVQRLCDIKQGYTQYGGLRPFGVSFLYAGWDKHYGFQLYQSDPSGNYSGWKATAIGN  164 (213)
T ss_pred             HHHHHH-HHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCcccceeEEEEEEEeCCCCCEEEEECCCCCeeeeeEEEECC
Confidence            999984 8899999999999999999999865  77777789999999999999 5789999999999999999999999


Q ss_pred             chHhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEE
Q 026175          161 GNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKI  209 (242)
Q Consensus       161 g~~~a~~~Le~~~~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii  209 (242)
                      ++.+++++||+.|+++||++||++++++||+.+.+||..++.+++|.++
T Consensus       165 gs~~~~~~Le~~y~~~ms~eea~~l~~~al~~~~~r~~~~~~~~ei~~~  213 (213)
T cd03752         165 NNQAAQSLLKQDYKDDMTLEEALALAVKVLSKTMDSTKLTSEKLEFATL  213 (213)
T ss_pred             CcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEC
Confidence            9999999999999999999999999999999999999999999999875

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit

Probab=100.00  E-value=1.4e-44  Score=299.80  Aligned_cols=187  Identities=27%  Similarity=0.406  Sum_probs=180.0

Q ss_pred             ceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 026175           28 TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKEL  107 (242)
Q Consensus        28 ~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~~~l  107 (242)
                      +|+|||+++||||||+|+|.+.|.++.+++.+||++|+++++++++|..+|++.+.+++|. .++.|+++++++++++.+
T Consensus         1 tt~iai~~~dgvvia~d~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~-~~~~~~~~~~~~~~~~~l   79 (188)
T cd03764           1 TTTVGIVCKDGVVLAADKRASMGNFIASKNVKKIFQIDDKIAMTIAGSVGDAQSLVRILKA-EARLYELRRGRPMSIKAL   79 (188)
T ss_pred             CcEEEEEeCCEEEEEEccccccCCEEecCCcccEEEccCCEEEEcCccHHHHHHHHHHHHH-HHHHHHHHHCCCCCHHHH
Confidence            6899999999999999999998899999999999999999999999999999999999998 588899999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhhcCCCCCHHHHHHHHH
Q 026175          108 HSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLE  187 (242)
Q Consensus       108 a~~l~~~~~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eeai~l~~  187 (242)
                      ++++++.+|.++  +|||+|++|+||+|+++|+||++||+|++.+++++|+|+|+++++++|++.|+++|+++||+++++
T Consensus        80 ~~~i~~~~~~~~--~~P~~~~~lvaG~d~~~~~ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~~~~ea~~l~~  157 (188)
T cd03764          80 ATLLSNILNSSK--YFPYIVQLLIGGVDEEGPHLYSLDPLGSIIEDKYTATGSGSPYAYGVLEDEYKEDMTVEEAKKLAI  157 (188)
T ss_pred             HHHHHHHHHhcC--CCCcEEEEEEEEEeCCCCEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence            999999998875  799999999999998889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcccCCCCcEEEEEEcCCCeEEe
Q 026175          188 KCMRVLLYRDRSAVNKLQIAKITEEGTTIS  217 (242)
Q Consensus       188 ~~l~~~~~~d~~s~~~i~v~ii~k~g~~~~  217 (242)
                      +||+.+.+||+.++++++|++|+++|++.+
T Consensus       158 ~~l~~~~~rd~~~~~~i~i~iv~~~g~~~~  187 (188)
T cd03764         158 RAIKSAIERDSASGDGIDVVVITKDGYKEL  187 (188)
T ss_pred             HHHHHHHhhcCCCCCcEEEEEECCCCeEeC
Confidence            999999999999999999999999998765

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7

Probab=100.00  E-value=2.2e-45  Score=309.01  Aligned_cols=198  Identities=17%  Similarity=0.226  Sum_probs=184.6

Q ss_pred             ccCCCCCC---CCCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHH
Q 026175            7 KQGLVGPN---DPIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELL   83 (242)
Q Consensus         7 ~~~~~~~~---~~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~   83 (242)
                      ..++|.|+   .++||+.+|+++|+|+|||+++||||||+|++.+ +.++.++..+||++|++|++++++|+.+|++.+.
T Consensus         4 ~~~~fsp~Gr~~Qveya~~av~~G~t~Igik~~dgVvlaad~~~~-~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~   82 (207)
T cd03755           4 AITVFSPDGHLFQVEYAQEAVRKGTTAVGVRGKDCVVLGVEKKSV-AKLQDPRTVRKICMLDDHVCLAFAGLTADARVLI   82 (207)
T ss_pred             CCceECCCCeEeHHHHHHHHHHcCCCEEEEEeCCEEEEEEecCCC-CcccCCCccCcEEEECCCEEEEEecchhhHHHHH
Confidence            34678888   5789999999999999999999999999999976 5677777899999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH--HhhcCCCCCcceEEEEEEEEC-CcEEEEEECCCCceeeeCeEEEcc
Q 026175           84 RNLDELILYDNMWDDGNSLGPKELHSYLTRVM--YNRRNKFDPLWNSLVLGGVKN-GQKYLGMVSMIGVNFEDSHVATGF  160 (242)
Q Consensus        84 ~~lr~~~~~~~~~~~g~~i~~~~la~~l~~~~--~~~r~~~rP~~vs~lvaG~D~-~~p~Ly~idp~G~~~~~~~~aiG~  160 (242)
                      +.+|. .++.|+++++++++++.+++.|++.+  |++++++|||+|++||+|+|+ ++|+||++||+|++.+++++|+|+
T Consensus        83 ~~~r~-~~~~~~~~~~~~i~~~~la~~ls~~~~~y~~~~~~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~a~G~  161 (207)
T cd03755          83 NRARL-ECQSHRLTVEDPVTVEYITRYIAGLQQRYTQSGGVRPFGISTLIVGFDPDGTPRLYQTDPSGTYSAWKANAIGR  161 (207)
T ss_pred             HHHHH-HHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCcccceeEEEEEEEeCCCCeEEEEECCCcCEEcceEEEECC
Confidence            99998 48889999999999999999999988  888888999999999999994 699999999999999999999999


Q ss_pred             chHhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEE
Q 026175          161 GNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKI  209 (242)
Q Consensus       161 g~~~a~~~Le~~~~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii  209 (242)
                      |+.+++++||++|+++|+.+||++++++||+.+.+   .++.++||+++
T Consensus       162 gs~~~~~~Le~~~~~~ms~eeai~l~~~~l~~~~~---~~~~~~e~~~~  207 (207)
T cd03755         162 NSKTVREFLEKNYKEEMTRDDTIKLAIKALLEVVQ---SGSKNIELAVM  207 (207)
T ss_pred             CCHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhC---CCCCeEEEEEC
Confidence            99999999999999999999999999999999985   67889999875

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal

Probab=100.00  E-value=3.3e-45  Score=308.80  Aligned_cols=200  Identities=21%  Similarity=0.305  Sum_probs=187.4

Q ss_pred             cCCCCCC---CCCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHH
Q 026175            8 QGLVGPN---DPIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLR   84 (242)
Q Consensus         8 ~~~~~~~---~~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~   84 (242)
                      .++|.|+   .++||+.+|+++|+|+|||+++||||||+|++.+ +.++..++.+||++|++++++++||+.+|++.+.+
T Consensus         6 ~~~fsp~G~l~Q~eya~~av~~G~t~igik~~dgvvla~d~~~~-~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~   84 (211)
T cd03756           6 ITVFSPDGRLYQVEYAREAVKRGTTALGIKCKEGVVLAVDKRIT-SKLVEPESIEKIYKIDDHVGAATSGLVADARVLID   84 (211)
T ss_pred             CceECCCCeEhHHHHHHHHHHcCCCEEEEEECCEEEEEEeccCC-CcccCCCccceEEEEcCCEEEEEecCHHHHHHHHH
Confidence            3568888   5789999999999999999999999999999987 67777889999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH--HhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeEEEccch
Q 026175           85 NLDELILYDNMWDDGNSLGPKELHSYLTRVM--YNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGN  162 (242)
Q Consensus        85 ~lr~~~~~~~~~~~g~~i~~~~la~~l~~~~--~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~aiG~g~  162 (242)
                      +++. .++.|+++++++++++.++++|++.+  |++++++|||+|++||+|+|+++|+||++||+|++.+++++|+|+|+
T Consensus        85 ~l~~-~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~ll~G~D~~~~~ly~vd~~G~~~~~~~~a~G~g~  163 (211)
T cd03756          85 RARV-EAQIHRLTYGEPIDVEVLVKKICDLKQQYTQHGGVRPFGVALLIAGVDDGGPRLFETDPSGAYNEYKATAIGSGR  163 (211)
T ss_pred             HHHH-HHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCeechhEEEEEEEEeCCCCEEEEECCCCCeeeeEEEEECCCC
Confidence            9998 48889999999999999999999976  66777789999999999999889999999999999999999999999


Q ss_pred             HhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEc
Q 026175          163 HLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKIT  210 (242)
Q Consensus       163 ~~a~~~Le~~~~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~  210 (242)
                      .+++++||+.|+++|+++||++++++||..+.+++. ++++++|++|+
T Consensus       164 ~~~~~~Le~~~~~~m~~~ea~~l~~~~l~~~~~~~~-~~~~~~v~ii~  210 (211)
T cd03756         164 QAVTEFLEKEYKEDMSLEEAIELALKALYAALEENE-TPENVEIAYVT  210 (211)
T ss_pred             HHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhcccC-CCCcEEEEEEe
Confidence            999999999999999999999999999999987664 89999999986

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1

Probab=100.00  E-value=3.8e-45  Score=308.51  Aligned_cols=200  Identities=18%  Similarity=0.170  Sum_probs=184.2

Q ss_pred             ccCCCCCC---CCCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHH
Q 026175            7 KQGLVGPN---DPIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELL   83 (242)
Q Consensus         7 ~~~~~~~~---~~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~   83 (242)
                      ....|.|+   -++||+++|+++|+|+|||+++||||||+|+|.+. .+  .++.+|||+|++++++++||+.+|++.+.
T Consensus         4 ~~t~fsp~Grl~Qveya~~av~~G~t~IgIk~~dgVvlaad~r~~~-~l--~~~~~KI~~I~~~i~~~~sG~~~D~~~l~   80 (211)
T cd03749           4 DVTTWSPQGRLFQVEYAMEAVKQGSATVGLKSKTHAVLVALKRATS-EL--SSYQKKIFKVDDHIGIAIAGLTADARVLS   80 (211)
T ss_pred             CCceECCCCeEeHHHHHHHHHhcCCCEEEEEeCCEEEEEEeccCcc-cc--CCccccEEEeCCCEEEEEEeChHhHHHHH
Confidence            34567787   57899999999999999999999999999999763 43  35679999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH--HhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeEEEccc
Q 026175           84 RNLDELILYDNMWDDGNSLGPKELHSYLTRVM--YNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFG  161 (242)
Q Consensus        84 ~~lr~~~~~~~~~~~g~~i~~~~la~~l~~~~--~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~aiG~g  161 (242)
                      +++|. .++.|+++++++++++.+++.+++.+  |+++.+.|||+|++||+|+|+.+|+||++||+|++.+++++|+|+|
T Consensus        81 ~~~r~-~~~~~~~~~~~~~~v~~la~~is~~~~~~t~~~~~rP~~v~~ii~G~D~~gp~Ly~~Dp~G~~~~~~~~a~G~g  159 (211)
T cd03749          81 RYMRQ-ECLNYRFVYDSPIPVSRLVSKVAEKAQINTQRYGRRPYGVGLLIAGYDESGPHLFQTCPSGNYFEYKATSIGAR  159 (211)
T ss_pred             HHHHH-HHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEEcCCCCeEEEECCCcCEeeeeEEEECCC
Confidence            99998 48899999999999999999999876  5577778999999999999988899999999999999999999999


Q ss_pred             hHhhHHHHhhhcC--CCCCHHHHHHHHHHHHHHHHhccc-CCCCcEEEEEEc
Q 026175          162 NHLARPILRDEWH--ENLSYEDGVKLLEKCMRVLLYRDR-SAVNKLQIAKIT  210 (242)
Q Consensus       162 ~~~a~~~Le~~~~--~~~s~eeai~l~~~~l~~~~~~d~-~s~~~i~v~ii~  210 (242)
                      +++++++||++|+  ++|+.+||+++++++|+.+..+|. .++++|||++|+
T Consensus       160 ~~~a~~~Le~~~~~~~~ms~ee~i~~~~~~l~~~~~~~~~~~~~~iei~ii~  211 (211)
T cd03749         160 SQSARTYLERHFEEFEDCSLEELIKHALRALRETLPGEQELTIKNVSIAIVG  211 (211)
T ss_pred             cHHHHHHHHHhhccccCCCHHHHHHHHHHHHHHHhccCCCCCCCcEEEEEEC
Confidence            9999999999998  599999999999999999998887 899999999984

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type

Probab=100.00  E-value=1.1e-44  Score=307.32  Aligned_cols=201  Identities=22%  Similarity=0.250  Sum_probs=185.9

Q ss_pred             cCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCHH
Q 026175           26 TGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPK  105 (242)
Q Consensus        26 ~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~~  105 (242)
                      +|+|+|||+++||||||+|+|.+.+.++.+++.+|||+|++|++++++|+.+|++.+.+++|. +++.|+++++++++++
T Consensus         1 ~G~T~igi~~kdgVvlaad~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~r~-~~~~~~~~~~~~i~~~   79 (219)
T TIGR03690         1 HGTTIVALTYPGGVLMAGDRRATQGNMIASRDVEKVYPTDEYSAVGIAGTAGLAIELVRLFQV-ELEHYEKIEGVPLTLD   79 (219)
T ss_pred             CCcEEEEEEECCEEEEEECCccccCcEEEcCCcceEEEcCCcEEEEecccHHHHHHHHHHHHH-HHHHHHHHHCCCCCHH
Confidence            489999999999999999999998899999999999999999999999999999999999997 4888999999999999


Q ss_pred             HHHHHHHHHHHhh-cCCCCCcceEEEEEEEEC--CcEEEEEECCCCc-eeeeCeEEEccchHhhHHHHhhhcCCCCCHHH
Q 026175          106 ELHSYLTRVMYNR-RNKFDPLWNSLVLGGVKN--GQKYLGMVSMIGV-NFEDSHVATGFGNHLARPILRDEWHENLSYED  181 (242)
Q Consensus       106 ~la~~l~~~~~~~-r~~~rP~~vs~lvaG~D~--~~p~Ly~idp~G~-~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~ee  181 (242)
                      .++++|++.++.. ...+|||+|++||+|+|+  ++|+||++||+|+ +..++++|+|+|+++++++||++|+++||.+|
T Consensus        80 ~la~~ls~~~~~~~~~~~rp~~v~~iiaG~D~~~~~~~Ly~~Dp~G~~~~~~~~~a~G~g~~~a~~~Le~~~~~~ms~ee  159 (219)
T TIGR03690        80 GKANRLAAMVRGNLPAAMQGLAVVPLLAGYDLDAGAGRIFSYDVTGGRYEERGYHAVGSGSVFAKGALKKLYSPDLDEDD  159 (219)
T ss_pred             HHHHHHHHHHHhhhhhccCCceEEEEEEEECCCCCCcEEEEEeCCCCeeecCCeEEEeccHHHHHHHHHhcCCCCcCHHH
Confidence            9999999988654 234899999999999994  6899999999995 77789999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcccCCCCc-------EEEEEEcCCCeEEeCCcccccccc
Q 026175          182 GVKLLEKCMRVLLYRDRSAVNK-------LQIAKITEEGTTISQPYALKTFWG  227 (242)
Q Consensus       182 ai~l~~~~l~~~~~~d~~s~~~-------i~v~ii~k~g~~~~~~~ei~~~~~  227 (242)
                      |++++++||+.+.+||..+++.       ++|++|+++|++.++++||+....
T Consensus       160 ai~l~~~al~~~~~~d~~s~~~~~~~~~~~ei~ii~~~g~~~l~~~ei~~~~~  212 (219)
T TIGR03690       160 ALRVAVEALYDAADDDSATGGPDLVRGIYPTVVVITADGARRVPESELEELAR  212 (219)
T ss_pred             HHHHHHHHHHHHHhcccccCCcccccccccEEEEEccCceEEcCHHHHHHHHH
Confidence            9999999999999999876664       399999999999999999988653

Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.

>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit

Probab=100.00  E-value=6.2e-44  Score=296.23  Aligned_cols=189  Identities=21%  Similarity=0.316  Sum_probs=180.0

Q ss_pred             ceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 026175           28 TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKEL  107 (242)
Q Consensus        28 ~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~~~l  107 (242)
                      +|+|||+++||||||+|+|.+.+.++.+++.+|||+|+++++++++|..+|++.+.+.+|.+ ++.|+++++++++++.+
T Consensus         1 tt~igi~~~dgvvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~-~~~~~~~~~~~~~~~~~   79 (189)
T cd03763           1 TTIVGVVFKDGVVLGADTRATEGPIVADKNCEKIHYIAPNIYCCGAGTAADTEAVTNMISSN-LELHRLNTGRKPRVVTA   79 (189)
T ss_pred             CeEEEEEECCeEEEEEcCCcccCceEEcCCccceEEecCCEEEEcCccHHHHHHHHHHHHHH-HHHHHHHhCCCCCHHHH
Confidence            68999999999999999999988888889999999999999999999999999999999984 88999999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhhcCCCCCHHHHHHHHH
Q 026175          108 HSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLE  187 (242)
Q Consensus       108 a~~l~~~~~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eeai~l~~  187 (242)
                      +++|++.+|..+   .||+|++|+||+|+++|+||++||+|++.+++++|+|+++.+++++|+++|+++||++||+++++
T Consensus        80 a~~l~~~l~~~~---~p~~v~~ivaG~d~~g~~ly~~d~~G~~~~~~~~a~G~~~~~~~~~L~~~~~~~ls~~ea~~l~~  156 (189)
T cd03763          80 LTMLKQHLFRYQ---GHIGAALVLGGVDYTGPHLYSIYPHGSTDKLPFVTMGSGSLAAMSVLEDRYKPDMTEEEAKKLVC  156 (189)
T ss_pred             HHHHHHHHHHcC---CccceeEEEEeEcCCCCEEEEECCCCCEEecCEEEEcCCHHHHHHHHHhhcCCCCCHHHHHHHHH
Confidence            999999988654   49999999999998889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcccCCCCcEEEEEEcCCCeEEeCCc
Q 026175          188 KCMRVLLYRDRSAVNKLQIAKITEEGTTISQPY  220 (242)
Q Consensus       188 ~~l~~~~~~d~~s~~~i~v~ii~k~g~~~~~~~  220 (242)
                      +||+.+.+||+.++++++|++|+++|++...|+
T Consensus       157 ~~l~~~~~rd~~~~~~~~v~ii~~~g~~~~~~~  189 (189)
T cd03763         157 EAIEAGIFNDLGSGSNVDLCVITKDGVEYLRNY  189 (189)
T ss_pred             HHHHHHHHhcCcCCCceEEEEEcCCcEEEecCC
Confidence            999999999999999999999999999887664

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd01911 proteasome_alpha proteasome alpha subunit

Probab=100.00  E-value=2e-44  Score=303.60  Aligned_cols=199  Identities=21%  Similarity=0.303  Sum_probs=186.5

Q ss_pred             cCCCCCC---CCCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHH
Q 026175            8 QGLVGPN---DPIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLR   84 (242)
Q Consensus         8 ~~~~~~~---~~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~   84 (242)
                      .+.|.|+   .++||+++|+.+|+|+|||+++||||||+|++.+. .++..++.+|||+|+++++++++|..+|++.+.+
T Consensus         5 ~~~f~~~G~~~q~eya~~~~~~G~tvigi~~~dgVvlaaD~~~~~-~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~   83 (209)
T cd01911           5 ITTFSPEGRLFQVEYALEAVKNGSTAVGIKGKDGVVLAVEKKVTS-KLLDPSSVEKIFKIDDHIGCAVAGLTADARVLVN   83 (209)
T ss_pred             CccCCCCCEEeHHHHHHHHHHcCCCEEEEEECCEEEEEEEecCCc-cccCCcccceEEEecCCeEEEeccCcHhHHHHHH
Confidence            4778888   46899999999999999999999999999999984 5666789999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH--HhhcCCCCCcceEEEEEEEEC-CcEEEEEECCCCceeeeCeEEEccc
Q 026175           85 NLDELILYDNMWDDGNSLGPKELHSYLTRVM--YNRRNKFDPLWNSLVLGGVKN-GQKYLGMVSMIGVNFEDSHVATGFG  161 (242)
Q Consensus        85 ~lr~~~~~~~~~~~g~~i~~~~la~~l~~~~--~~~r~~~rP~~vs~lvaG~D~-~~p~Ly~idp~G~~~~~~~~aiG~g  161 (242)
                      .++. .++.|++++|++++++.+|+++++.+  |++++++||++|++||+|+|+ ++|+||.+||.|++.+++++++|+|
T Consensus        84 ~l~~-~~~~~~~~~g~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~iv~G~d~~~~~~Ly~iD~~G~~~~~~~~a~G~g  162 (209)
T cd01911          84 RARV-EAQNYRYTYGEPIPVEVLVKRIADLAQVYTQYGGVRPFGVSLLIAGYDEEGGPQLYQTDPSGTYFGYKATAIGKG  162 (209)
T ss_pred             HHHH-HHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccChhheEEEEEEcCCCCcEEEEECCCCCeeeeeEEEeCCC
Confidence            9998 47888899999999999999999987  777778899999999999995 5999999999999999999999999


Q ss_pred             hHhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEE
Q 026175          162 NHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKI  209 (242)
Q Consensus       162 ~~~a~~~Le~~~~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii  209 (242)
                      +.+++++|++.|+++|+.+||++++.+||+.+.+||. ++++++|+++
T Consensus       163 ~~~~~~~L~~~~~~~ms~~ea~~l~~~~l~~~~~~d~-~~~~~~i~i~  209 (209)
T cd01911         163 SQEAKTFLEKRYKKDLTLEEAIKLALKALKEVLEEDK-KAKNIEIAVV  209 (209)
T ss_pred             cHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHhccC-CCCcEEEEEC
Confidence            9999999999999999999999999999999999998 9999999875

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.

>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6

Probab=100.00  E-value=1.9e-44  Score=304.98  Aligned_cols=200  Identities=18%  Similarity=0.213  Sum_probs=184.1

Q ss_pred             ccCCCCCC---CCCccCcccccc-CceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHH
Q 026175            7 KQGLVGPN---DPIQRTQLPYVT-GTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQEL   82 (242)
Q Consensus         7 ~~~~~~~~---~~~~~~~~a~~~-g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l   82 (242)
                      -.++|.|+   -++||+++|+++ |+|+|||+++||||||+|+|.+ ..++.++..+|||+|++++++++||+.+|++.+
T Consensus         5 ~~~~fsp~Grl~Qveya~~a~~~~g~t~igi~~~d~Vvlaad~r~~-~~~i~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l   83 (215)
T cd03754           5 HITIFSPEGRLYQVEYAFKAVKNAGLTSVAVRGKDCAVVVTQKKVP-DKLIDPSTVTHLFRITDEIGCVMTGMIADSRSQ   83 (215)
T ss_pred             CCeeECCCCeEeHHHhHHHHHhcCCccEEEEEeCCEEEEEEecccc-ccccCCcccCceEEEcCCEEEEEEechhhHHHH
Confidence            35678888   468999999985 8899999999999999999988 466666789999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHH--HHhhcCCCCCcceEEEEEEEE-CCcEEEEEECCCCceeeeCeEEEc
Q 026175           83 LRNLDELILYDNMWDDGNSLGPKELHSYLTRV--MYNRRNKFDPLWNSLVLGGVK-NGQKYLGMVSMIGVNFEDSHVATG  159 (242)
Q Consensus        83 ~~~lr~~~~~~~~~~~g~~i~~~~la~~l~~~--~~~~r~~~rP~~vs~lvaG~D-~~~p~Ly~idp~G~~~~~~~~aiG  159 (242)
                      .+++|. .++.|+++++++++++.+|+++++.  +|+++++.|||+|++|++|+| +++|+||++||+|++.+++++|+|
T Consensus        84 ~~~~r~-~~~~~~~~~~~~i~v~~la~~ls~~~q~yt~~~~~RP~~v~~ii~G~D~~~gp~Ly~~Dp~Gs~~~~~~~a~G  162 (215)
T cd03754          84 VQRARY-EAAEFKYKYGYEMPVDVLAKRIADINQVYTQHAYMRPLGVSMILIGIDEELGPQLYKCDPAGYFAGYKATAAG  162 (215)
T ss_pred             HHHHHH-HHHHHHHHHCCCCCHHHHHHHHHHHHHHHhCCCCCcCCeeEEEEEEEeCCCCeEEEEEcCCccEEeEEEEEEC
Confidence            999998 4889999999999999999999986  588888889999999999999 479999999999999999999999


Q ss_pred             cchHhhHHHHhhhcCCC--C--CHHHHHHHHHHHHHHHHhcccCCCCcEEEEEE
Q 026175          160 FGNHLARPILRDEWHEN--L--SYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKI  209 (242)
Q Consensus       160 ~g~~~a~~~Le~~~~~~--~--s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii  209 (242)
                      +|+..++++||++|+++  |  +.+||++++++||..+.+|| .++++++|.+|
T Consensus       163 ~gs~~~~~~Le~~~~~~~~~~~s~eeai~l~~~al~~~~~rd-~~~~~~ei~~~  215 (215)
T cd03754         163 VKEQEATNFLEKKLKKKPDLIESYEETVELAISCLQTVLSTD-FKATEIEVGVV  215 (215)
T ss_pred             CCcHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEC
Confidence            99999999999999985  7  99999999999999999988 45889999875

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit

Probab=100.00  E-value=2.5e-43  Score=292.17  Aligned_cols=185  Identities=17%  Similarity=0.296  Sum_probs=177.1

Q ss_pred             ceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 026175           28 TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKEL  107 (242)
Q Consensus        28 ~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~~~l  107 (242)
                      +|+|||+++||||||+|+|.+.|.++.+++.+|||+|++|++++++|..+|++.+.++++. .++.|+++++++++++.+
T Consensus         1 ~t~igi~~~dgVvla~D~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~-~~~~~~~~~~~~~~~~~~   79 (188)
T cd03762           1 TTIIAVEYDGGVVLGADSRTSTGSYVANRVTDKLTQLHDRIYCCRSGSAADTQAIADYVRY-YLDMHSIELGEPPLVKTA   79 (188)
T ss_pred             CeEEEEEECCeEEEEEcccccCCceEEcCCcccEEEccCCEEEEecccHHHHHHHHHHHHH-HHHHhHHhhCCCCCHHHH
Confidence            6899999999999999999998888888999999999999999999999999999999998 488899999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCcceEEEEEEEEC-CcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhhcCCCCCHHHHHHHH
Q 026175          108 HSYLTRVMYNRRNKFDPLWNSLVLGGVKN-GQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLL  186 (242)
Q Consensus       108 a~~l~~~~~~~r~~~rP~~vs~lvaG~D~-~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eeai~l~  186 (242)
                      ++++++.+|.+|   |||+|++||||+|+ ++|+||++||+|++.+++++++|+|+.+++++|++.|+++||++||++++
T Consensus        80 a~~l~~~~~~~~---~~~~~~~ii~G~d~~~gp~ly~~d~~G~~~~~~~~~~G~g~~~~~~~Le~~~~~~~s~~ea~~l~  156 (188)
T cd03762          80 ASLFKNLCYNYK---EMLSAGIIVAGWDEQNGGQVYSIPLGGMLIRQPFAIGGSGSTYIYGYVDANYKPGMTLEECIKFV  156 (188)
T ss_pred             HHHHHHHHHhcc---ccceeeEEEEEEcCCCCcEEEEECCCCCEEecCEEEEcccHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence            999999998775   79999999999994 78999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccCCCCcEEEEEEcCCCeEE
Q 026175          187 EKCMRVLLYRDRSAVNKLQIAKITEEGTTI  216 (242)
Q Consensus       187 ~~~l~~~~~~d~~s~~~i~v~ii~k~g~~~  216 (242)
                      ++||+.+.+||+.++++++|++|+++|++.
T Consensus       157 ~~al~~~~~rd~~~~~~~~i~~i~~~g~~~  186 (188)
T cd03762         157 KNALSLAMSRDGSSGGVIRLVIITKDGVER  186 (188)
T ss_pred             HHHHHHHHHhccccCCCEEEEEECCCCEEE
Confidence            999999999999999999999999999764

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5

Probab=100.00  E-value=5.9e-44  Score=301.59  Aligned_cols=200  Identities=17%  Similarity=0.239  Sum_probs=183.6

Q ss_pred             ccCCCCCC---CCCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHH
Q 026175            7 KQGLVGPN---DPIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELL   83 (242)
Q Consensus         7 ~~~~~~~~---~~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~   83 (242)
                      ..++|.|+   .++||+++|+++|+|+|||+++||||||+|+|.+ +.+...++.+||++|+++++++++|+.+|++.+.
T Consensus         4 ~~~~f~p~G~~~Q~eya~~a~~~G~t~igik~~dgVvlaad~r~~-~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~   82 (213)
T cd03753           4 GVNTFSPEGRLFQVEYAIEAIKLGSTAIGIKTKEGVVLAVEKRIT-SPLMEPSSVEKIMEIDDHIGCAMSGLIADARTLI   82 (213)
T ss_pred             CCccCCCCCeEhHHHHHHHHHhcCCCEEEEEeCCEEEEEEecccC-CcCcCCCccceEEEEcCCEEEEEecCHHHHHHHH
Confidence            34778888   5689999999999999999999999999999998 4667778899999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHH--hhc-----CCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeE
Q 026175           84 RNLDELILYDNMWDDGNSLGPKELHSYLTRVMY--NRR-----NKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHV  156 (242)
Q Consensus        84 ~~lr~~~~~~~~~~~g~~i~~~~la~~l~~~~~--~~r-----~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~  156 (242)
                      +.+|. +++.|+++++++++++.+++.|++.++  +++     ..+|||+|++||+|+|+++|+||++||+|++.+++++
T Consensus        83 ~~~r~-~~~~~~~~~~~~i~~~~~~~~ls~~~~~~~~~~~~~~~~~rP~~v~~ii~G~D~~gp~Ly~vd~~G~~~~~~~~  161 (213)
T cd03753          83 DHARV-EAQNHRFTYNEPMTVESVTQAVSDLALQFGEGDDGKKAMSRPFGVALLIAGVDENGPQLFHTDPSGTFTRCDAK  161 (213)
T ss_pred             HHHHH-HHHHHHHHhCCCCCHHHHHHHHHHHHHHHhCcccccccccccceEEEEEEEEcCCCCEEEEECCCCCeecccEE
Confidence            99998 588899999999999999999999884  343     2369999999999999889999999999999999999


Q ss_pred             EEccchHhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEE
Q 026175          157 ATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKI  209 (242)
Q Consensus       157 aiG~g~~~a~~~Le~~~~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii  209 (242)
                      |+|+++++++++|+++|+++||++||++++++||+.+.+++ +++++++|+++
T Consensus       162 a~G~~~~~~~~~L~~~~~~~ls~eeai~l~~~~l~~~~~~~-~~~~~~ei~~~  213 (213)
T cd03753         162 AIGSGSEGAQSSLQEKYHKDMTLEEAEKLALSILKQVMEEK-LNSTNVELATV  213 (213)
T ss_pred             EECCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEC
Confidence            99999999999999999999999999999999999987654 88899999975

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type

Probab=100.00  E-value=1.7e-43  Score=301.24  Aligned_cols=207  Identities=19%  Similarity=0.231  Sum_probs=183.3

Q ss_pred             CCCCC----CCCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHH
Q 026175           10 LVGPN----DPIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRN   85 (242)
Q Consensus        10 ~~~~~----~~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~   85 (242)
                      |+.||    .+-||+++|+++|+|+|||+++||||||+|++.        ++.+|||+|+||++|+++|+.+|++.+++.
T Consensus         6 ~~~~~~~~~~~~EYA~kav~~g~T~VGIk~kdgVVLaaek~~--------~~~~KI~~I~d~ig~~~sG~~~D~~~lv~~   77 (228)
T TIGR03691         6 YVSPEQIMRDRAELARKGIARGRSVVVLTYADGILFVAENPS--------RSLHKISELYDRIGFAAVGKYNEFENLRRA   77 (228)
T ss_pred             ccCHHHHHhhHHHHHHHHHHcCCcEEEEEeCCeEEEEEecCC--------CCcCcEEEecCCEEEEEcCCHHHHHHHHHH
Confidence            44555    567999999999999999999999999999972        368999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhcC-CCCCHHHHHHHHHHHHHhh-cCCCCCcceEEEEEEEE--CCcEEEEEECCCCceeeeC-eEEEcc
Q 026175           86 LDELILYDNMWDDG-NSLGPKELHSYLTRVMYNR-RNKFDPLWNSLVLGGVK--NGQKYLGMVSMIGVNFEDS-HVATGF  160 (242)
Q Consensus        86 lr~~~~~~~~~~~g-~~i~~~~la~~l~~~~~~~-r~~~rP~~vs~lvaG~D--~~~p~Ly~idp~G~~~~~~-~~aiG~  160 (242)
                      ++.. ++.|++.++ .+++++.+|+.+++.++.. ++++|||+|++|++|+|  +.+|+||++||+|++.+++ ++|+|+
T Consensus        78 ~r~~-a~~~~~~~~~~~~~v~~la~~~tq~~~~~~~~~~RP~gvs~Li~G~d~~~~gp~Ly~vDpsG~~~~~~~~~aiG~  156 (228)
T TIGR03691        78 GIRY-ADMRGYSYDRRDVTGRGLANAYAQTLGTIFTEQQKPYEVEICVAEVGETPDQDQLYRITFDGSIVDERGFVVMGG  156 (228)
T ss_pred             HHHH-HHHHhhhcCCCCccHHHHHHHHHhhcccccccccCcceEEEEEEEEcCCCCCCEEEEECCCCCceeccceEEECC
Confidence            9984 788888887 6899999998777665321 34579999999999998  4789999999999999976 899999


Q ss_pred             chHhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHH--hcccCCCCcEEEEEEcCCC----eEEeCCcccccc
Q 026175          161 GNHLARPILRDEWHENLSYEDGVKLLEKCMRVLL--YRDRSAVNKLQIAKITEEG----TTISQPYALKTF  225 (242)
Q Consensus       161 g~~~a~~~Le~~~~~~~s~eeai~l~~~~l~~~~--~~d~~s~~~i~v~ii~k~g----~~~~~~~ei~~~  225 (242)
                      |++.++++||++|+++||.+||++++++||+.+.  +++.+++.+++|.+|++++    ++.++++||+.+
T Consensus       157 gs~~a~~~Lek~y~~~ms~eeai~la~~aL~~~~~~~r~~~~~~~iEv~ii~k~~~~~~f~~l~~~ei~~~  227 (228)
T TIGR03691       157 TTEPIATALKESYRDGLSLADALGLAVQALRAGGNGEKRELDAASLEVAVLDRSRPRRAFRRITGEALERL  227 (228)
T ss_pred             ChHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhccccccCCccceEEEEEeCCCCccceEECCHHHHHhh
Confidence            9999999999999999999999999999999995  4667889999999999754    899999998764

Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.

>cd01912 proteasome_beta proteasome beta subunit

Probab=100.00  E-value=2.3e-42  Score=286.28  Aligned_cols=187  Identities=32%  Similarity=0.484  Sum_probs=178.0

Q ss_pred             ceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 026175           28 TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKEL  107 (242)
Q Consensus        28 ~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~~~l  107 (242)
                      +|+|||+++||||||+|+|.+.+..+.+++.+|||+|+++++++++|+.+|++.+.++++. .++.|++.++++++++.+
T Consensus         1 tt~i~i~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~-~~~~~~~~~~~~~~~~~l   79 (189)
T cd01912           1 TTIVGIKGKDGVVLAADTRASAGSLVASRNFDKIFKISDNILLGTAGSAADTQALTRLLKR-NLRLYELRNGRELSVKAA   79 (189)
T ss_pred             CcEEEEEeCCEEEEEEcCCcccCcEEEcCCcCcEEEccCCEEEEccccHHHHHHHHHHHHH-HHHHHHHHhCCCCCHHHH
Confidence            6899999999999999999998877778999999999999999999999999999999998 488899999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCcceEEEEEEEEC-CcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhhcCCCCCHHHHHHHH
Q 026175          108 HSYLTRVMYNRRNKFDPLWNSLVLGGVKN-GQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLL  186 (242)
Q Consensus       108 a~~l~~~~~~~r~~~rP~~vs~lvaG~D~-~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eeai~l~  186 (242)
                      ++++++.+|.++.  |||++++||||+|+ ++|+||++||+|++.+++++|+|+++++++++|++.|+++||++||++++
T Consensus        80 ~~~l~~~~~~~~~--~P~~~~~iv~G~d~~~~~~l~~id~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~s~~ea~~~~  157 (189)
T cd01912          80 ANLLSNILYSYRG--FPYYVSLIVGGVDKGGGPFLYYVDPLGSLIEAPFVATGSGSKYAYGILDRGYKPDMTLEEAVELV  157 (189)
T ss_pred             HHHHHHHHHhcCC--CCeEEEEEEEEEcCCCCeEEEEECCCCCeEecCEEEEcccHHHHHHHHHhccCCCCCHHHHHHHH
Confidence            9999999988763  89999999999996 89999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccCCCCcEEEEEEcCCCeEEe
Q 026175          187 EKCMRVLLYRDRSAVNKLQIAKITEEGTTIS  217 (242)
Q Consensus       187 ~~~l~~~~~~d~~s~~~i~v~ii~k~g~~~~  217 (242)
                      .+||+.+.++|+.++++++|++|+++|++..
T Consensus       158 ~~~l~~~~~~d~~~~~~~~v~vi~~~g~~~~  188 (189)
T cd01912         158 KKAIDSAIERDLSSGGGVDVAVITKDGVEEL  188 (189)
T ss_pred             HHHHHHHHHhcCccCCcEEEEEECCCCEEEc
Confidence            9999999999999999999999999997653

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>KOG0181 consensus 20S proteasome, regulatory subunit alpha type PSMA2/PRE8 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.7e-44  Score=289.63  Aligned_cols=215  Identities=19%  Similarity=0.269  Sum_probs=202.3

Q ss_pred             CCCCC---CCCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHH
Q 026175           10 LVGPN---DPIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNL   86 (242)
Q Consensus        10 ~~~~~---~~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l   86 (242)
                      +|.|+   .+++|+..|+.+|.+.|||+.+||||||++++.. +.|....+++|++.|.+||+|.+||..+|++.+++..
T Consensus        12 tFSpsGKL~QieyAL~Av~~G~~SvGi~A~nGvVlatekk~~-s~L~~~~sv~KV~~i~~~IG~vYSGmgpD~RvlV~~~   90 (233)
T KOG0181|consen   12 TFSPSGKLVQIEYALTAVVNGQTSVGIKAANGVVLATEKKDV-SPLVDEESVRKVEKITPHIGCVYSGMGPDYRVLVHKS   90 (233)
T ss_pred             EEcCCCceehHHHHHHHHhCCCCceeeeecCceEEEeccCCC-CccchhhhhhhHhhccCCcceEEecCCCceeehhhHH
Confidence            45666   6899999999999999999999999999999877 7898899999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhcCCCCCHHHHHHHHHHHH--HhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeEEEccchHh
Q 026175           87 DELILYDNMWDDGNSLGPKELHSYLTRVM--YNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHL  164 (242)
Q Consensus        87 r~~~~~~~~~~~g~~i~~~~la~~l~~~~--~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~aiG~g~~~  164 (242)
                      |+. ++.|...|++++++..|...++..+  |||.++.|||||++||||+|+++|.||++||||++..|+++|+|.+...
T Consensus        91 rki-Ae~Yy~vY~e~~pt~qlv~~~asvmQEyTqsgGvrPFGvslliaG~~~~~p~LyQvdPSGsyf~wkatA~Gkn~v~  169 (233)
T KOG0181|consen   91 RKI-AEQYYRVYGEPIPTTQLVQEVASVMQEYTQSGGVRPFGVSLLIAGWDEGGPLLYQVDPSGSYFAWKATAMGKNYVN  169 (233)
T ss_pred             HHH-HHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEeecCCCceeEEEECCccceeehhhhhhccCcch
Confidence            984 7778888999999999999999988  8899999999999999999999999999999999999999999999999


Q ss_pred             hHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCeEEeCCcccccccc
Q 026175          165 ARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALKTFWG  227 (242)
Q Consensus       165 a~~~Le~~~~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g~~~~~~~ei~~~~~  227 (242)
                      ++.+||++|+++|.+|+++..++..|+...+. ..+.++|||.++..++++++++.||+++++
T Consensus       170 aktFlEkR~~edleldd~ihtailtlkE~feg-e~~~~nieigv~~~~~F~~lt~~eI~d~l~  231 (233)
T KOG0181|consen  170 AKTFLEKRYNEDLELDDAIHTAILTLKESFEG-EMTAKNIEIGVCGENGFRRLTPAEIEDYLA  231 (233)
T ss_pred             HHHHHHHHhccccccchHHHHHHHHHHHHhcc-ccccCceEEEEecCCceeecCHHHHHHHHh
Confidence            99999999999999999999999999999864 477899999999999999999999998764

>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit

Probab=100.00  E-value=2.7e-42  Score=294.49  Aligned_cols=193  Identities=16%  Similarity=0.161  Sum_probs=172.7

Q ss_pred             ceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEec----CceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCC-CC
Q 026175           28 TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIG----KHSLLGASGEISDFQELLRNLDELILYDNMWDDGN-SL  102 (242)
Q Consensus        28 ~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~----~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~-~i  102 (242)
                      |.+|||+++||||||+|+|.+ ..++..++.+|||+|+    +|++|+.||+.+|++.+++++|.+ ++.|++++|+ ++
T Consensus         1 ~~~vGIk~kdGVVLaadkr~~-~~l~~~~~~~KI~~I~~~~d~~I~~~~sG~~aD~~~l~~~~r~~-~~~~~~~~g~~~~   78 (236)
T cd03765           1 TYCLGIKLDAGLVFASDSRTN-AGVDNISTYRKMFVFSVPGERVIVLLTAGNLATTQAVISLLQRD-LEDPEETNLLNAP   78 (236)
T ss_pred             CeEEEEEeCCeEEEEEccCcc-CCCccccccceEEEecCCCCCEEEEEcCCcHHHHHHHHHHHHHH-HHhhHHhhCCCCC
Confidence            468999999999999999987 4555556899999998    899999999999999999999984 8999999999 89


Q ss_pred             CHHHHHHHHHHHH---HhhcCC-----CCCcceEEEEEEEE-CCcEEEEEECCCCceeee----CeEEEccchHhhHHHH
Q 026175          103 GPKELHSYLTRVM---YNRRNK-----FDPLWNSLVLGGVK-NGQKYLGMVSMIGVNFED----SHVATGFGNHLARPIL  169 (242)
Q Consensus       103 ~~~~la~~l~~~~---~~~r~~-----~rP~~vs~lvaG~D-~~~p~Ly~idp~G~~~~~----~~~aiG~g~~~a~~~L  169 (242)
                      +++.+|+++++.+   +++.++     .|||+|++||+|+| +.||+||++||+|++.++    +++|+|. +.+++++|
T Consensus        79 ~v~~la~~i~~~l~~~~~q~~~~~~~~~rp~gvslIigG~D~~~Gp~LY~idpsG~~~e~~a~~~~~AiG~-~~~a~~~L  157 (236)
T cd03765          79 TMFDAARYVGETLREVQEQDREALKKAGIDFSASFILGGQIKGEEPRLFLIYPQGNFIEATPDTPFLQIGE-TKYGKPIL  157 (236)
T ss_pred             CHHHHHHHHHHHHHHHHhhcccccccCCcceEEEEEEEeEECCCCCEEEEECCCCCEEeecCCCceeeeCC-chhhHHHH
Confidence            9999999999975   344443     48999999999999 678999999999999998    5689996 69999999


Q ss_pred             hhhcCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCeEEeCCcccc
Q 026175          170 RDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALK  223 (242)
Q Consensus       170 e~~~~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g~~~~~~~ei~  223 (242)
                      |++|+++||++||++++++||+.+.+||..++++|+|++|+++|++....+.|+
T Consensus       158 ek~yk~~ms~eeai~la~~al~~a~~rd~~sg~~iev~vI~k~G~~~~~~~~~~  211 (236)
T cd03765         158 DRVITPDTSLEDAAKCALVSMDSTMRSNLSVGPPLDLLVYERDSLQVGHYRRIE  211 (236)
T ss_pred             HHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEECCCeeeeeeEEec
Confidence            999999999999999999999999999999999999999999998764444443

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins

Probab=100.00  E-value=5.9e-41  Score=277.50  Aligned_cols=185  Identities=32%  Similarity=0.475  Sum_probs=171.1

Q ss_pred             cccCceEEEEEeCCEEEEEEcCCcccCceeeeCC-cCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCC
Q 026175           24 YVTGTSVVALKYKDGILMAADMGGSYGSTIRYKS-VERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSL  102 (242)
Q Consensus        24 ~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~-~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i  102 (242)
                      |++|+|+|||+++|||+||+|+|.+++..+..++ .+|||+|++|++++++|..+|++.+.++++. .++.|++.++.++
T Consensus         1 v~~G~t~vgi~~~dgvvla~d~~~~~g~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~l~~-~~~~~~~~~~~~~   79 (190)
T PF00227_consen    1 VNNGTTVVGIKGKDGVVLAADKRISYGSKLRSPNTVDKIFKINDNIIIGFSGLTADFQYLIRRLRE-EAQEYRFSYGRPI   79 (190)
T ss_dssp             HHTSBEEEEEEESSEEEEEEEEEEEETTEEEESSTSSSEEEEETTEEEEEEESHHHHHHHHHHHHH-HHHHHHHHHSSGT
T ss_pred             CCCCeEEEEEEECCEEEEEEccccccccccccccccceeeeccCcceeeccccccchHHHHhhhcc-cchhhhhccCccc
Confidence            4689999999999999999999999888875555 7999999999999999999999999999998 4888999999999


Q ss_pred             CHHHHHHHHHHHH--HhhcCCCCCcceEEEEEEEEC-CcEEEEEECCCCceeee-CeEEEccchHhhHHHHhhhcCCCCC
Q 026175          103 GPKELHSYLTRVM--YNRRNKFDPLWNSLVLGGVKN-GQKYLGMVSMIGVNFED-SHVATGFGNHLARPILRDEWHENLS  178 (242)
Q Consensus       103 ~~~~la~~l~~~~--~~~r~~~rP~~vs~lvaG~D~-~~p~Ly~idp~G~~~~~-~~~aiG~g~~~a~~~Le~~~~~~~s  178 (242)
                      +++.+++.+++.+  ++++.++||+++++|++|+|+ ++|+||.+||+|++.++ +++|+|+|+.+++++|++.|+++|+
T Consensus        80 ~~~~l~~~~~~~~~~~~~~~~~~p~~~~~li~G~d~~~~~~l~~vd~~G~~~~~~~~~aiG~g~~~~~~~l~~~~~~~~~  159 (190)
T PF00227_consen   80 SPEYLAKAIASLIQNYTYRSGRRPYGVSLLIAGYDEDGGPQLYSVDPSGSYIECKRFAAIGSGSQFAQPILEKLYKPDLS  159 (190)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTTTSTTSEEEEEEEEETTTEEEEEEEETTSEEEEBSSEEEESTTHHHHHHHHHHHHTTTSS
T ss_pred             cchhhhhhhHHHHhhhcccccccCccccceeeeeccccccceeeeccccccccccccccchhcchhhhHHHHhhccCCCC
Confidence            9998888888765  445556899999999999995 56999999999999999 6999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcccCCCCcEEEEEE
Q 026175          179 YEDGVKLLEKCMRVLLYRDRSAVNKLQIAKI  209 (242)
Q Consensus       179 ~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii  209 (242)
                      ++||++++++||+.+.++|..++++++|+||
T Consensus       160 ~~ea~~~~~~~l~~~~~~d~~~~~~~~v~vi  190 (190)
T PF00227_consen  160 LEEAIELALKALKEAIDRDILSGDNIEVAVI  190 (190)
T ss_dssp             HHHHHHHHHHHHHHHHHHBTTSTSEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHhhCCccCCeEEEEEC
Confidence            9999999999999999999999999999987

They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....

>KOG0185 consensus 20S proteasome, regulatory subunit beta type PSMB4/PRE4 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.9e-41  Score=279.04  Aligned_cols=223  Identities=60%  Similarity=0.995  Sum_probs=213.6

Q ss_pred             CCCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHh
Q 026175           15 DPIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDN   94 (242)
Q Consensus        15 ~~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~   94 (242)
                      .|++++..|+..||++||++++|||+||+|+..++|++....+++|||+++||+++|++|..+|++.+.+.|.+..++..
T Consensus        29 ~~~qrt~~p~vTGTSVla~ky~~GVviaaD~lgSYGslaR~~nVeRi~kVgdntllG~sGdisD~Q~i~r~L~~l~iedn  108 (256)
T KOG0185|consen   29 YPIQRTLNPIVTGTSVLALKYKDGVVIAADTLGSYGSLARYKNVERIFKVGDNTLLGASGDISDFQYIQRVLEQLVIEDN  108 (256)
T ss_pred             CCcccccCceeccceEEEEEecCceEEEecccccchhhhhhcCceeeEEecCceEEecCccHHHHHHHHHHHHHHHhccc
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999998767777


Q ss_pred             hhhcCCCCCHHHHHHHHHHHHHhhcCCCCCcceEEEEEEEEC-CcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhhc
Q 026175           95 MWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKN-GQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEW  173 (242)
Q Consensus        95 ~~~~g~~i~~~~la~~l~~~~~~~r~~~rP~~vs~lvaG~D~-~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~  173 (242)
                      .+..|+.+.|+.+++.|.+++|.+|+.|.|+...++|+|+|+ +.|+|..+|-.|..++.+.+|+|.|++.+.++|++.|
T Consensus       109 ~~~Dg~~l~Pk~ih~yltrvlY~rRsKmnPlwntlvVgGv~~~g~~~lg~V~~~G~~Y~~~~vATGfg~hLa~P~lR~~~  188 (256)
T KOG0185|consen  109 RLDDGQSLGPKAIHSYLTRVLYARRSKMNPLWNTLVVGGVDNTGEPFLGYVDLLGVAYESPVVATGFGAHLALPLLRDEW  188 (256)
T ss_pred             ccccccccChHHHHHHHHHHHHHhhhccCchhhheeEeeecCCCCeeEEEEeeccccccCchhhhhhHHHhhhHHHHHhh
Confidence            788889999999999999999999999999999999999995 8999999999999999999999999999999999999


Q ss_pred             C---CCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCeEEeCCcccccccccccccCCccC
Q 026175          174 H---ENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALKTFWGFTAFQNPTAG  237 (242)
Q Consensus       174 ~---~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g~~~~~~~ei~~~~~~~~~~~~~~~  237 (242)
                      +   ++++.+||..++.+||+...+||+.+.++++|++|+++|+++..|+.|..+|+|++..+...+
T Consensus       189 ~~k~~~~s~eeA~~li~~cMrVL~YRD~ra~n~fqva~v~~eGv~i~~p~qv~~~W~fa~~~~gy~~  255 (256)
T KOG0185|consen  189 EKKGEDLSREEAEALIEKCMRVLYYRDARASNEFQVATVDEEGVTISKPYQVKTNWDFAETIKGYET  255 (256)
T ss_pred             hccchhhHHHHHHHHHHHHHHHHhccccccccceEEEEEcccceEecCceeeeecchhhhhcccccc
Confidence            7   589999999999999999999999999999999999999999999999999999999887654

>KOG0178 consensus 20S proteasome, regulatory subunit alpha type PSMA4/PRE9 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.1e-41  Score=276.57  Aligned_cols=221  Identities=15%  Similarity=0.196  Sum_probs=202.7

Q ss_pred             hhccCCCCCCC---CCccCccccccCceEEEEEeCCEEEEEEcCCcccCceee-eCCcCeEEEecCceEEEecCChhHHH
Q 026175            5 QAKQGLVGPND---PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIR-YKSVERIKPIGKHSLLGASGEISDFQ   80 (242)
Q Consensus         5 ~~~~~~~~~~~---~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~-~~~~~Ki~~i~~~i~~~~sG~~~D~~   80 (242)
                      |.|++.|.|++   +|||+++++.+.+|+|||.++||||||++++.+ ++|+. ..+.+||++|+|+|+|+.+|+.+|+.
T Consensus         6 dsrttiFspEGRLyQVEyAmeais~aGt~iGila~DGvvLa~e~k~t-~kll~t~~~~EKiY~l~d~iaC~vaGlt~DAn   84 (249)
T KOG0178|consen    6 DSRTTIFSPEGRLYQVEYAMEAISHAGTCIGILASDGVVLAGENKVT-SKLLDTSIPMEKIYKLNDNIACAVAGLTSDAN   84 (249)
T ss_pred             CCcccccCCCcchHHHHHHHHHHhhhcceeEEEecCceEEEeecccc-hhhhhccccHHHhhhcCCceEEEEecccccHH
Confidence            78999999996   689999999999999999999999999999988 56654 56889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH--HhhcCCCCCcceEEEEEEEEC-CcEEEEEECCCCceeeeCeEE
Q 026175           81 ELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVM--YNRRNKFDPLWNSLVLGGVKN-GQKYLGMVSMIGVNFEDSHVA  157 (242)
Q Consensus        81 ~l~~~lr~~~~~~~~~~~g~~i~~~~la~~l~~~~--~~~r~~~rP~~vs~lvaG~D~-~~p~Ly~idp~G~~~~~~~~a  157 (242)
                      .|++.+|. .+|.|.+++|+++|++.|.+.+|...  |||.++.||||||+|.+|||+ .|.+||+.||||++..|++.+
T Consensus        85 vL~n~aRi-~AQ~yl~~y~e~iP~eqLv~~lcdiKQayTQygG~RPFGVSfLYaGwd~~~gyqLy~SdPSGny~gWka~c  163 (249)
T KOG0178|consen   85 VLKNYARI-IAQRYLFRYGEEIPCEQLVTFLCDIKQAYTQYGGKRPFGVSFLYAGWDDRYGYQLYQSDPSGNYGGWKATC  163 (249)
T ss_pred             HHHHHHHH-HHHHHHHHhCCCCcHHHHHHHHHHHHHHHhhccCcCCCceeeeeeceecCcceEEEecCCCCCccccceee
Confidence            99999998 58999999999999999999999866  999999999999999999995 679999999999999999999


Q ss_pred             EccchHhhHHHHhhhcCCC-CCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCC----eEEeCCcccccccc
Q 026175          158 TGFGNHLARPILRDEWHEN-LSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEG----TTISQPYALKTFWG  227 (242)
Q Consensus       158 iG~g~~~a~~~Le~~~~~~-~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g----~~~~~~~ei~~~~~  227 (242)
                      +|..+..++++|+..|+++ ++++||+.++++.|....+.+.++.+.+||+.|+++.    .+.+.++||....+
T Consensus       164 iG~N~~Aa~s~Lkqdykdd~~~~~eA~~laikvL~kt~d~~~lt~eklEia~~~k~~~k~v~~i~~~~ev~kll~  238 (249)
T KOG0178|consen  164 IGANSGAAQSMLKQDYKDDENDLEEAKALAIKVLSKTLDSGSLTAEKLEIATITKDCNKTVLKILKKDEVLKLLE  238 (249)
T ss_pred             eccchHHHHHHHHhhhccccccHHHHHHHHHHHHHhhcccCCCChhheEEEEEEecCCceEEEecCHHHHHHHHH
Confidence            9999999999999999876 4599999999999999999999999999999999975    45677778776444

>cd01906 proteasome_protease_HslV proteasome_protease_HslV

Probab=100.00  E-value=4e-40  Score=270.73  Aligned_cols=181  Identities=27%  Similarity=0.351  Sum_probs=170.6

Q ss_pred             ceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 026175           28 TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKEL  107 (242)
Q Consensus        28 ~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~~~l  107 (242)
                      +|+|||+++||||||+|+|.+.+....+++.+|||+|+++++++++|..+|++.+.+.+++. ++.|+++++++++++.+
T Consensus         1 tt~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~-~~~~~~~~~~~~~~~~l   79 (182)
T cd01906           1 TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEKIFKIDDHIGCAFAGLAADAQTLVERLRKE-AQLYRLRYGEPIPVEAL   79 (182)
T ss_pred             CcEEEEEeCCEEEEEEecccCCcCeecCCCcceEEEECCCEEEEEeeCHHHHHHHHHHHHHH-HHHHHHHhCCCCCHHHH
Confidence            68999999999999999999977776688999999999999999999999999999999984 78888899999999999


Q ss_pred             HHHHHHHHHhhcCCCCCcceEEEEEEEEC-CcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhhcCCCCCHHHHHHHH
Q 026175          108 HSYLTRVMYNRRNKFDPLWNSLVLGGVKN-GQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLL  186 (242)
Q Consensus       108 a~~l~~~~~~~r~~~rP~~vs~lvaG~D~-~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eeai~l~  186 (242)
                      ++++++.+|..+..+|||++++|++|+|+ ++|+||.+||+|++.+++++|+|+|+.+++++|++.|+++||.+||++++
T Consensus        80 ~~~l~~~~~~~~~~~~p~~~~~lv~G~d~~~~~~Ly~id~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~l~  159 (182)
T cd01906          80 AKLLANLLYEYTQSLRPLGVSLLVAGVDEEGGPQLYSVDPSGSYIEYKATAIGSGSQYALGILEKLYKPDMTLEEAIELA  159 (182)
T ss_pred             HHHHHHHHHHhCCCccChheEEEEEEEeCCCCcEEEEECCCCCEeeccEEEECCCcHHHHHHHHHHccCCCCHHHHHHHH
Confidence            99999999876533799999999999995 89999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccCCCCcEEEEEE
Q 026175          187 EKCMRVLLYRDRSAVNKLQIAKI  209 (242)
Q Consensus       187 ~~~l~~~~~~d~~s~~~i~v~ii  209 (242)
                      ++||+.+.++|..++.+++|.+|
T Consensus       160 ~~~l~~~~~~~~~~~~~~~i~ii  182 (182)
T cd01906         160 LKALKSALERDLYSGGNIEVAVI  182 (182)
T ss_pred             HHHHHHHHcccCCCCCCEEEEEC
Confidence            99999999999989999999875

This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo

>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.1e-40  Score=266.90  Aligned_cols=208  Identities=13%  Similarity=0.198  Sum_probs=194.2

Q ss_pred             CCCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHh
Q 026175           15 DPIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDN   94 (242)
Q Consensus        15 ~~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~   94 (242)
                      -+|||+.+|+.+|+|+||++++|+|||..+++.. .+|...+...||..+++|+.++++|+.+|++.+++++|- +|+.|
T Consensus        18 ~QVEYAqEAvrkGstaVgvrg~~~vvlgvEkkSv-~~Lq~~r~~rkI~~ld~hV~mafaGl~aDArilinrArv-ecqSh   95 (249)
T KOG0183|consen   18 FQVEYAQEAVRKGSTAVGVRGNNCVVLGVEKKSV-PKLQDERTVRKISMLDDHVVMAFAGLTADARILINRARV-ECQSH   95 (249)
T ss_pred             EeeHhHHHHHhcCceEEEeccCceEEEEEeecch-hhhhhhhhhhhheeecceeeEEecCCCccceeehhhHhH-hhhhh
Confidence            4799999999999999999999999999999976 899999999999999999999999999999999999997 69999


Q ss_pred             hhhcCCCCCHHHHHHHHHHHH--HhhcCCCCCcceEEEEEEEE-CCcEEEEEECCCCceeeeCeEEEccchHhhHHHHhh
Q 026175           95 MWDDGNSLGPKELHSYLTRVM--YNRRNKFDPLWNSLVLGGVK-NGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRD  171 (242)
Q Consensus        95 ~~~~g~~i~~~~la~~l~~~~--~~~r~~~rP~~vs~lvaG~D-~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~  171 (242)
                      ++..+.+++++.+.++|+.+.  |||.++.||||+|+||+|+| ++.|.||++||+|.+.+|++.|+|.+++.+..+||+
T Consensus        96 rlt~edpvtveyitRyiA~~kQrYTqs~grRPFGvs~Li~GfD~~g~p~lyqtePsG~f~ewka~aiGr~sk~VrEflEK  175 (249)
T KOG0183|consen   96 RLTLEDPVTVEYITRYIAGLKQRYTQSNGRRPFGVSTLIGGFDPDGTPRLYQTEPSGIFSEWKANAIGRSSKTVREFLEK  175 (249)
T ss_pred             hcccCCCcHHHHHHHHHHHhhhhhhccCCcccccceEEEEeeCCCCCeeeEeeCCCcchhhhhccccccccHHHHHHHHH
Confidence            999999999999999999865  99988899999999999999 578999999999999999999999999999999999


Q ss_pred             hcCCC--CCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCC-eEEeCCcccccccc
Q 026175          172 EWHEN--LSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEG-TTISQPYALKTFWG  227 (242)
Q Consensus       172 ~~~~~--~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g-~~~~~~~ei~~~~~  227 (242)
                      .|.++  .+..++++|++++|..+...   .+++++++++++++ .+++.+++|+....
T Consensus       176 ~y~e~~~~~~~~~ikL~ir~LleVvqs---~~~nie~aVm~~~~~~~~l~~~~I~~~v~  231 (249)
T KOG0183|consen  176 NYKEEAIATEGETIKLAIRALLEVVQS---GGKNIEVAVMKRRKDLKMLESEEIDDIVK  231 (249)
T ss_pred             hcccccccccccHHHHHHHHHHHHhhc---CCCeeEEEEEecCCceeecCHHHHHHHHH
Confidence            99876  78899999999999998754   46799999999987 99999999987543

>KOG0184 consensus 20S proteasome, regulatory subunit alpha type PSMA3/PRE10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.6e-39  Score=265.75  Aligned_cols=211  Identities=18%  Similarity=0.227  Sum_probs=189.5

Q ss_pred             CCCCC---CCCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHH
Q 026175           10 LVGPN---DPIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNL   86 (242)
Q Consensus        10 ~~~~~---~~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l   86 (242)
                      +|.|.   -++||+.+|+.+++|+|||||+||||++++|.++ ++|..++...|||.|++||+|+++|+.+|.+.+..++
T Consensus        14 ~fSpdGrvfQveYA~KAven~~T~IGIk~kdGVVl~vEKli~-SkLy~p~sn~ri~~V~r~iG~avaGl~~Dg~~l~~~a   92 (254)
T KOG0184|consen   14 TFSPDGRVFQVEYAQKAVENSGTCIGIKCKDGVVLAVEKLIT-SKLYEPGSNERIFSVDRHIGMAVAGLIPDGRHLVNRA   92 (254)
T ss_pred             eeCCCCceehHHHHHHHHhcCCcEEEEecCCeEEEEEeeeec-ccccccCCCCceEeecccccEEEeccccchHHHHHHH
Confidence            46665   4679999999999999999999999999999998 8999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhcCCCCCHHHHHHHHHHHH--HhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeEEEccchHh
Q 026175           87 DELILYDNMWDDGNSLGPKELHSYLTRVM--YNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHL  164 (242)
Q Consensus        87 r~~~~~~~~~~~g~~i~~~~la~~l~~~~--~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~aiG~g~~~  164 (242)
                      |. ++..|+..++.++|...+++.+...+  ||..+..||||++.++++||++||+||.++|+|..+.++++|+|.|.+.
T Consensus        93 r~-ea~~~~~~y~~piP~~~la~rva~yvh~~Tly~~vRpfG~~~~~~~yd~~g~~LymiepSG~~~~Y~~aaiGKgrq~  171 (254)
T KOG0184|consen   93 RD-EAASWRKNYGDPIPGKHLADRVADYVHAFTLYSSVRPFGASTILGSYDDEGPQLYMIEPSGSSYGYKGAAIGKGRQA  171 (254)
T ss_pred             HH-HHHHHHHhcCCCCchHHHHHHHHhhhheeehhhccccccceEEEEEEeCCCceEEEEcCCCCccceeeeeccchhHH
Confidence            98 47788888999999999999999987  7777779999999999999999999999999999999999999999999


Q ss_pred             hHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCC--CeEEeCCccc
Q 026175          165 ARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEE--GTTISQPYAL  222 (242)
Q Consensus       165 a~~~Le~~~~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~--g~~~~~~~ei  222 (242)
                      +++.||+..-.+|+++|+++-+.++|+.+.+......-.||+.++..+  |.+..-|.||
T Consensus       172 aKtElEKL~~~~mt~~e~VkeaakIiY~~HDe~KdK~feiEm~wvg~eTnG~h~~vp~el  231 (254)
T KOG0184|consen  172 AKTELEKLKIDEMTCKELVKEAAKIIYKVHDENKDKEFEIEMGWVGEETNGLHEKVPSEL  231 (254)
T ss_pred             HHHHHHhcccccccHHHHHHHHHheeEeecccccCcceEEEEEEEEeecCCccccCcHHH
Confidence            999999998889999999999999999997544333446889998763  6555445554

>KOG0179 consensus 20S proteasome, regulatory subunit beta type PSMB1/PRE7 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.6e-38  Score=255.10  Aligned_cols=202  Identities=22%  Similarity=0.332  Sum_probs=189.8

Q ss_pred             CCCCCCccCccccc-cCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHH
Q 026175           12 GPNDPIQRTQLPYV-TGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELI   90 (242)
Q Consensus        12 ~~~~~~~~~~~a~~-~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~   90 (242)
                      ....+.+..++|+. +|+|+|||++.|++|+|+|+|.+.+..|.+++..|||+++|+++++.+|..+|+..|...++. .
T Consensus        13 ~s~~~~~~~f~PY~~NGGT~vaIaG~dFavvA~DTR~s~gy~I~sR~~~Ki~~l~D~~vl~~sGF~aD~l~L~k~i~~-r   91 (235)
T KOG0179|consen   13 SSKTMDHERFSPYEDNGGTTVAIAGEDFAVVAGDTRMSSGYNINSRDQSKIFKLGDNIVLGSSGFYADTLALVKVIKS-R   91 (235)
T ss_pred             ccCccccccCCccccCCceEEEEcCCceEEEecccccccceeeeccccchheeccCceEEecccchhhHHHHHHHHHH-H
Confidence            34567788899986 899999999999999999999999999999999999999999999999999999999999987 5


Q ss_pred             HHHhhhhcCCCCCHHHHHHHHHHHHHhhcCCCCCcceEEEEEEEEC-CcEEEEEECCCCceeeeCeEEEccchHhhHHHH
Q 026175           91 LYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKN-GQKYLGMVSMIGVNFEDSHVATGFGNHLARPIL  169 (242)
Q Consensus        91 ~~~~~~~~g~~i~~~~la~~l~~~~~~~r~~~rP~~vs~lvaG~D~-~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~L  169 (242)
                      ++.|+++++..|++...|++|+..+|.+|  +.||.|..+++|+|+ +++.+|++||.|++.+..+.|.|+++.+++++|
T Consensus        92 ~~~Y~~~h~k~ms~~s~A~lls~~LY~kR--FFPYYv~~ilaGiDeeGKG~VySyDPvGsyer~~~~AgGsa~~mI~PfL  169 (235)
T KOG0179|consen   92 IKQYEHDHNKKMSIHSAAQLLSTILYSKR--FFPYYVFNILAGIDEEGKGAVYSYDPVGSYERVTCRAGGSAASMIQPFL  169 (235)
T ss_pred             HHHHhhcccccccHHHHHHHHHHHHhhcc--cccceeeeeeecccccCceeEEeecCCcceeeeeeecCCcchhhhhhhh
Confidence            89999999999999999999999999999  899999999999995 899999999999999999999999999999999


Q ss_pred             hhhcC-----------CCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCeEE
Q 026175          170 RDEWH-----------ENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTI  216 (242)
Q Consensus       170 e~~~~-----------~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g~~~  216 (242)
                      ++..+           ..+|+|+|++++..+|..+.+||..+++.++|+|+++||++.
T Consensus       170 DnQi~~kn~~~e~~~~~~Ls~e~ai~lv~d~F~SAaERdI~tGD~l~i~I~tk~gV~~  227 (235)
T KOG0179|consen  170 DNQIGHKNQNLENAERTPLSLERAIRLVKDAFTSAAERDIYTGDKLEICIITKDGVEV  227 (235)
T ss_pred             hhhccCcCcccccCcccccCHHHHHHHHHHHhhhhhhcccccCCcEEEEEEecCCEEE
Confidence            97652           368999999999999999999999999999999999999764

>KOG0175 consensus 20S proteasome, regulatory subunit beta type PSMB5/PSMB8/PRE2 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.8e-38  Score=264.42  Aligned_cols=209  Identities=19%  Similarity=0.252  Sum_probs=196.6

Q ss_pred             cccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCC
Q 026175           24 YVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLG  103 (242)
Q Consensus        24 ~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~  103 (242)
                      ..+|||.+|++++.|||+|+|+|.+.|.+|.+.+++||.+|+++++-+++|-++|++.+-+.+.+ +|+.|++++++.|+
T Consensus        68 ~~hGTTTLAF~f~~GvivAvDSRAs~G~YIasqtv~KVIeIn~ylLGTmAGgAADCqfWer~L~k-ecRL~eLRnkeriS  146 (285)
T KOG0175|consen   68 FAHGTTTLAFKFKGGVIVAVDSRASAGSYIASQTVKKVIEINPYLLGTMAGGAADCQFWERVLAK-ECRLHELRNKERIS  146 (285)
T ss_pred             ecCCceEEEEEecCcEEEEEeccccccceeechhhceeeeechhhhhcccCcchhhHHHHHHHHH-HHHHHHHhcCccee
Confidence            46899999999999999999999999999999999999999999999999999999999999988 58999999999999


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhhcCCCCCHHHHH
Q 026175          104 PKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGV  183 (242)
Q Consensus       104 ~~~la~~l~~~~~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eeai  183 (242)
                      +...+++|++.+|.+|+.  .+.+..+|||||+.||.||++|..|.....+-+++|||+.+|+++|++.|+++||.+||.
T Consensus       147 VsaASKllsN~~y~YkGm--GLsmGtMi~G~Dk~GP~lyYVDseG~Rl~G~~FSVGSGs~yAYGVLDsgYr~dls~eEA~  224 (285)
T KOG0175|consen  147 VSAASKLLSNMVYQYKGM--GLSMGTMIAGWDKKGPGLYYVDSEGTRLSGDLFSVGSGSTYAYGVLDSGYRYDLSDEEAY  224 (285)
T ss_pred             hHHHHHHHHHHHhhccCc--chhheeeEeeccCCCCceEEEcCCCCEecCceEeecCCCceeEEeeccCCCCCCCHHHHH
Confidence            999999999999998863  477899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcccCCCCcEEEEEEcCCCeEEeCCccccc-ccccccccCCc
Q 026175          184 KLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALKT-FWGFTAFQNPT  235 (242)
Q Consensus       184 ~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g~~~~~~~ei~~-~~~~~~~~~~~  235 (242)
                      +|+++++..+..||..+|+-+.++.|+++|+..+++.++.+ +..+.++..|.
T Consensus       225 ~L~rrAI~hAThRDaySGG~vnlyHv~edGW~~v~~~Dv~~L~~~~~e~~~~~  277 (285)
T KOG0175|consen  225 DLARRAIYHATHRDAYSGGVVNLYHVKEDGWVKVSNTDVSELHYHYYEVAPPE  277 (285)
T ss_pred             HHHHHHHHHHHhcccccCceEEEEEECCccceecCCccHHHHHHHHHHhcCcc
Confidence            99999999999999999999999999999999999999877 45555555543

>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.6e-38  Score=251.13  Aligned_cols=191  Identities=16%  Similarity=0.269  Sum_probs=181.8

Q ss_pred             CceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCHHH
Q 026175           27 GTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKE  106 (242)
Q Consensus        27 g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~~~  106 (242)
                      |.+++||++.|+|++|+|+....+.++..++.+|++.|++++.|+++|..+|+.++.++++++ ++.|+.++|.+++|+.
T Consensus         1 Me~llGIkg~dfvilAsDt~~~~si~~~k~~~dK~~~ls~~~lm~~~Ge~GDt~qF~eyi~~N-i~LYkirnGyeLSp~~   79 (200)
T KOG0177|consen    1 METLLGIKGPDFVILASDTSAARSILVLKDDHDKIHRLSDHILMATVGEAGDTVQFTEYIQKN-IQLYKIRNGYELSPSA   79 (200)
T ss_pred             CceEEEeecCCEEEEeecchhhcceEEecccccceEEeccceeeeeecCCCceehHHHHHHhh-hhHHhhhcCCcCCHHH
Confidence            568999999999999999999999999999999999999999999999999999999999986 8999999999999999


Q ss_pred             HHHHHHHHHHhh-cCCCCCcceEEEEEEEE-CCcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhhcCCCCCHHHHHH
Q 026175          107 LHSYLTRVMYNR-RNKFDPLWNSLVLGGVK-NGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVK  184 (242)
Q Consensus       107 la~~l~~~~~~~-r~~~rP~~vs~lvaG~D-~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eeai~  184 (242)
                      +|+++++.+.+. |+ .+||.|++|+||+| +.+|.||++|..|+..+.++++.|.++.++.++|+++|+|+||.+||++
T Consensus        80 aahFtR~~La~~LRs-r~~yqV~~LvaGYd~~~gp~L~~iDyla~~~~vpy~~hGy~~~f~~sIlDr~Y~pdmt~eea~~  158 (200)
T KOG0177|consen   80 AAHFTRRELAESLRS-RTPYQVNILVAGYDPEEGPELYYIDYLATLVSVPYAAHGYGSYFCLSILDRYYKPDMTIEEALD  158 (200)
T ss_pred             HHHHHHHHHHHHHhc-CCCceEEEEEeccCCCCCCceeeehhhhhcccCCcccccchhhhhHHHHHhhhCCCCCHHHHHH
Confidence            999999999775 54 48999999999999 5679999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcccCCCCcEEEEEEcCCCeEEeCC
Q 026175          185 LLEKCMRVLLYRDRSAVNKLQIAKITEEGTTISQP  219 (242)
Q Consensus       185 l~~~~l~~~~~~d~~s~~~i~v~ii~k~g~~~~~~  219 (242)
                      +..+|+.++.+|-..+..++.|.+|+|||++.+..
T Consensus       159 lmkKCv~El~kRlvin~~~f~v~IVdkdGir~~~~  193 (200)
T KOG0177|consen  159 LMKKCVLELKKRLVINLPGFIVKIVDKDGIRKLDD  193 (200)
T ss_pred             HHHHHHHHHHHhcccCCCCcEEEEEcCCCceeccc
Confidence            99999999999999999999999999999987754

>KOG0182 consensus 20S proteasome, regulatory subunit alpha type PSMA6/SCL1 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.8e-36  Score=246.21  Aligned_cols=216  Identities=15%  Similarity=0.168  Sum_probs=198.7

Q ss_pred             CCCCCCC---CCccCcccccc-CceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHH
Q 026175            9 GLVGPND---PIQRTQLPYVT-GTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLR   84 (242)
Q Consensus         9 ~~~~~~~---~~~~~~~a~~~-g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~   84 (242)
                      +.|.|++   +|||+|+|+++ |-|+||++++|++|+++.|+.+ .+|+.++++..+|+|..+|+|+++|..+|.+..++
T Consensus        14 tIFspeGrLyQVEYafkAin~~gltsVavrgkDcavvvsqKkvp-DKLld~~tvt~~f~itk~ig~v~tG~~aDar~~v~   92 (246)
T KOG0182|consen   14 TIFSPEGRLYQVEYAFKAINQAGLTSVAVRGKDCAVVVTQKKVP-DKLLDSSTVTHLFRITKKIGCVITGMIADARSQVQ   92 (246)
T ss_pred             EEECCCceEEeeehHHHHhhcCCCceEEEcCCceEEEEecccCc-ccccccccceeEEEeeccceEEEecCCcchHHHHH
Confidence            4566774   79999999998 8899999999999999999998 89999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH--HhhcCCCCCcceEEEEEEEE-CCcEEEEEECCCCceeeeCeEEEccc
Q 026175           85 NLDELILYDNMWDDGNSLGPKELHSYLTRVM--YNRRNKFDPLWNSLVLGGVK-NGQKYLGMVSMIGVNFEDSHVATGFG  161 (242)
Q Consensus        85 ~lr~~~~~~~~~~~g~~i~~~~la~~l~~~~--~~~r~~~rP~~vs~lvaG~D-~~~p~Ly~idp~G~~~~~~~~aiG~g  161 (242)
                      ++|. ++..++++||.++|++.|++.+++.-  |+|+..|||+||.+++.|+| +.||.||.+||.|.+..+++.+.|..
T Consensus        93 rar~-eAa~~~yk~Gyemp~DiL~k~~Ad~~QvytQ~a~mRplg~~~~~i~~D~E~gP~vYk~DpAGyy~g~kAtaaG~K  171 (246)
T KOG0182|consen   93 RARY-EAAEFRYKYGYEMPCDILAKRMADKSQVYTQNAAMRPLGVAATLIGVDEERGPSVYKTDPAGYYYGFKATAAGVK  171 (246)
T ss_pred             HHHH-HHHhhhhhcCCCCCHHHHHHHHhhHHHHHhhhhhhcccceeEEEEEeccccCcceEeecCccccccceeeecccc
Confidence            9997 46778899999999999999999754  99999999999999999999 57899999999999999999999999


Q ss_pred             hHhhHHHHhhhcCCC--CCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCC--eEEeCCcccccccc
Q 026175          162 NHLARPILRDEWHEN--LSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEG--TTISQPYALKTFWG  227 (242)
Q Consensus       162 ~~~a~~~Le~~~~~~--~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g--~~~~~~~ei~~~~~  227 (242)
                      ...+..+||++++++  ++.+|++++++.||..+...|.. ...+||.+++++.  ++.|+.+||+.++.
T Consensus       172 q~e~tsfLEKk~Kk~~~~t~~e~ve~ai~al~~sl~~Dfk-~se~EVgvv~~~~p~f~~Ls~~eie~hL~  240 (246)
T KOG0182|consen  172 QQEATSFLEKKYKKDIDLTFEETVETAISALQSSLGIDFK-SSELEVGVVTVDNPEFRILSAEEIEEHLQ  240 (246)
T ss_pred             hhhHHHHHHHhhccCccchHHHHHHHHHHHHHHHHhcccC-CcceEEEEEEcCCcceeeccHHHHHHHHH
Confidence            999999999999987  67999999999999999977743 4689999999975  89999999998764

>KOG0863 consensus 20S proteasome, regulatory subunit alpha type PSMA1/PRE5 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.1e-36  Score=250.40  Aligned_cols=213  Identities=19%  Similarity=0.161  Sum_probs=192.1

Q ss_pred             CCCCCC---CCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHH
Q 026175           10 LVGPND---PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNL   86 (242)
Q Consensus        10 ~~~~~~---~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l   86 (242)
                      ++.|++   ++||+++|++.|++.||+|.++..||++-+|.. +.|  ++.++|||+|++|++++++|+++|++.|.+++
T Consensus        12 ~wsPqGrl~QvEya~EavkqGsatVGLks~thaVLvAl~r~~-seL--ss~QkKi~~iD~h~g~siAGLt~Darvl~~Yl   88 (264)
T KOG0863|consen   12 TWSPQGRLHQVEYAMEAVKQGSATVGLKSRTHAVLVALKRAQ-SEL--SSHQKKIFKIDDHIGISIAGLTADARVLSRYL   88 (264)
T ss_pred             EECCcceehHHHHHHHHHhcccceEeecccceEEEeeeccch-hHH--HHhhheeEecccccceEEeccCcchHHHHHHH
Confidence            455664   679999999999999999999999999988865 454  46889999999999999999999999999999


Q ss_pred             HHHHHHHhhhhcCCCCCHHHHHHHHHHHH--HhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeEEEccchHh
Q 026175           87 DELILYDNMWDDGNSLGPKELHSYLTRVM--YNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHL  164 (242)
Q Consensus        87 r~~~~~~~~~~~g~~i~~~~la~~l~~~~--~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~aiG~g~~~  164 (242)
                      |.+ +-.+++.+++++++..|...|++.+  -|||.+.|||||+++++|||+.||+||++.|+|.+.+++..+||+.++.
T Consensus        89 r~e-c~~~~~~~~r~~pv~rl~~~l~~k~q~~Tq~ygrRpYGVGllv~gYDe~G~hl~e~~Psg~v~e~~g~sIGsRSQs  167 (264)
T KOG0863|consen   89 RQE-CLNSRFIYGRPLPVLRLVEDLGDKAQENTQRYGRRPYGVGLLVAGYDESGPHLYEFCPSGNVFECKGMSIGSRSQS  167 (264)
T ss_pred             HHH-HhhhhhccCCcccHHHHHHHHHHHHhhhhhhhCCccccceEEEEeecCCCceeEEEcCCccEEEEeeeecccchhh
Confidence            984 6778899999999999999999887  4577778999999999999999999999999999999999999999999


Q ss_pred             hHHHHhhhcC--CCCCHHHHHHHHHHHHHHHHhcc-cCCCCcEEEEEEcCCC-eEEeCCccccccc
Q 026175          165 ARPILRDEWH--ENLSYEDGVKLLEKCMRVLLYRD-RSAVNKLQIAKITEEG-TTISQPYALKTFW  226 (242)
Q Consensus       165 a~~~Le~~~~--~~~s~eeai~l~~~~l~~~~~~d-~~s~~~i~v~ii~k~g-~~~~~~~ei~~~~  226 (242)
                      +.++||++..  ++++.||.|+.++.||+.....| .+++.+++|+|+.||. +++++.+++..+.
T Consensus       168 ARTyLEr~~e~f~~~~~eELI~~gi~Alr~tlp~de~lt~~nvsI~Ivgkd~pf~~~d~~~~~k~~  233 (264)
T KOG0863|consen  168 ARTYLERNLEEFEDSSPEELIKHGIMALRETLPEDEDLTGENVSIAIVGKDEPFTILDQKDVAKYV  233 (264)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcCcccccccceeEEEEEeCCCceEeecHHHHHHHH
Confidence            9999999986  59999999999999999998744 7889999999999985 8888887777543

>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.2e-35  Score=247.10  Aligned_cols=199  Identities=21%  Similarity=0.325  Sum_probs=185.6

Q ss_pred             cccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCC
Q 026175           22 LPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNS  101 (242)
Q Consensus        22 ~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~  101 (242)
                      ++.+.|||++|+.++||||+++|+|.|.|+++...+..||+.|.++|+|+.+|.++|...+.+.+..+ ++.|++..++.
T Consensus        32 ~~tkTGTtIvgv~~k~gvIlgADtRaT~G~IvaDKnC~KIH~ia~~IyccGAGtAADte~vt~m~ss~-l~Lh~l~t~R~  110 (271)
T KOG0173|consen   32 KATKTGTTIVGVIFKDGVILGADTRATEGPIVADKNCEKIHFIAPNIYCCGAGTAADTEMVTRMISSN-LELHRLNTGRK  110 (271)
T ss_pred             cccccCcEEEEEEeCCeEEEeecccccCCCeeecchhHHHhhcccceEEccCCchhhHHHHHHHHHHH-HHHHHhccCCC
Confidence            45678999999999999999999999999999999999999999999999999999999999988774 78899999999


Q ss_pred             CCHHHHHHHHHHHHHhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhhcCCCCCHHH
Q 026175          102 LGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYED  181 (242)
Q Consensus       102 i~~~~la~~l~~~~~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~ee  181 (242)
                      +.+-..-++|.+.+|.+.++   +++.+|++|+|..||+||++.|.|+....+|.++|||+..++++||.+|+++|+.||
T Consensus       111 ~rVv~A~~mlkQ~LFrYqG~---IgA~LiiGGvD~TGpHLy~i~phGStd~~Pf~alGSGslaAmsvlEsr~k~dlt~ee  187 (271)
T KOG0173|consen  111 PRVVTALRMLKQHLFRYQGH---IGAALILGGVDPTGPHLYSIHPHGSTDKLPFTALGSGSLAAMSVLESRWKPDLTKEE  187 (271)
T ss_pred             CceeeHHHHHHHHHHHhcCc---ccceeEEccccCCCCceEEEcCCCCcCccceeeeccchHHHHHHHHHhcCcccCHHH
Confidence            99988889999999887765   899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCeEEeCCccccc
Q 026175          182 GVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALKT  224 (242)
Q Consensus       182 ai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g~~~~~~~ei~~  224 (242)
                      |++|+.+|+.+.+..|..+|.++++|||++.+..++.++..+.
T Consensus       188 a~~Lv~eAi~AGi~nDLgSGsnvdlcVI~~~~~~~lr~~~~~~  230 (271)
T KOG0173|consen  188 AIKLVCEAIAAGIFNDLGSGSNVDLCVITKKGVEYLRNYSRPN  230 (271)
T ss_pred             HHHHHHHHHHhhhccccCCCCceeEEEEeCCCccccccCCCCC
Confidence            9999999999999999999999999999988887776665443

>KOG0174 consensus 20S proteasome, regulatory subunit beta type PSMB6/PSMB9/PRE3 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.4e-34  Score=232.36  Aligned_cols=202  Identities=19%  Similarity=0.275  Sum_probs=189.5

Q ss_pred             ccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCC
Q 026175           23 PYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSL  102 (242)
Q Consensus        23 a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i  102 (242)
                      .+..|||++|+.+++||||++|+|.+.|.++.++..+|+-+|.|+|+|+-||.++|.|.+.+.++-. ++.|...+++++
T Consensus        15 evstGTTImAv~y~gGVvlGaDSRTs~GayvanRvtDKlT~itD~i~cCRSGSAADtQaiaD~~~Y~-L~~~~~q~~~~p   93 (224)
T KOG0174|consen   15 EVSTGTTIMAVEYDGGVVLGADSRTSTGAYVANRVTDKLTPITDNIYCCRSGSAADTQAIADIVRYH-LELYTIQENKPP   93 (224)
T ss_pred             ccccCceEEEEEEcCcEEEeccCCccchHHHHhhhcccceeccccEEEecCCchhhHHHHHHHHHHH-HHHhhhhcCCCc
Confidence            5789999999999999999999999999999999999999999999999999999999999999974 899999999999


Q ss_pred             CHHHHHHHHHHHHHhhcCCCCCcceEEEEEEEE-CCcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhhcCCCCCHHH
Q 026175          103 GPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVK-NGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYED  181 (242)
Q Consensus       103 ~~~~la~~l~~~~~~~r~~~rP~~vs~lvaG~D-~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~ee  181 (242)
                      ++...|+++++..|.+|..   +.+++|||||| +.+.++|.+---|+..+.++..-|||+.+++++++..|+++|++||
T Consensus        94 ~v~~aA~l~r~~~Y~~re~---L~AgliVAGwD~~~gGqVY~iplGG~l~rq~~aIgGSGStfIYGf~D~~~r~nMt~EE  170 (224)
T KOG0174|consen   94 LVHTAASLFREICYNYREM---LSAGLIVAGWDEKEGGQVYSIPLGGSLTRQPFAIGGSGSTFIYGFCDANWRPNMTLEE  170 (224)
T ss_pred             hHHHHHHHHHHHHHhCHHh---hhcceEEeecccccCceEEEeecCceEeecceeeccCCceeeeeeehhhcCCCCCHHH
Confidence            9999999999999998753   78999999999 5789999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCeE--EeCCccccccccc
Q 026175          182 GVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTT--ISQPYALKTFWGF  228 (242)
Q Consensus       182 ai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g~~--~~~~~ei~~~~~~  228 (242)
                      ++.+.++++..+..||-.+|+.|.+.+|+++|+.  +..++++..+...
T Consensus       171 ~~~fvk~Av~lAi~rDGsSGGviR~~~I~~~Gver~~~~~d~~~~~~v~  219 (224)
T KOG0174|consen  171 CVRFVKNAVSLAIERDGSSGGVIRLVIINKAGVERRFFPGDKLGQFAVE  219 (224)
T ss_pred             HHHHHHHHHHHHHhccCCCCCEEEEEEEccCCceEEEecCCcccccccc
Confidence            9999999999999999999999999999999964  6788888775544

>KOG0180 consensus 20S proteasome, regulatory subunit beta type PSMB3/PUP3 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.1e-33  Score=223.27  Aligned_cols=187  Identities=20%  Similarity=0.293  Sum_probs=178.0

Q ss_pred             cCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCHH
Q 026175           26 TGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPK  105 (242)
Q Consensus        26 ~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~~  105 (242)
                      +|+++||++++++|.||+|.|.-...+..+++.+|||++.|++++|.+|++.|++.+.++++. ..+.|++++++.|.|+
T Consensus         7 nGg~vvAM~gk~cvaIa~D~RlG~q~~tistdf~ki~~igdr~y~GL~glatDvqtl~~~~~f-r~nLy~lre~R~i~P~   85 (204)
T KOG0180|consen    7 NGGSVVAMAGKNCVAIASDLRLGVQSQTISTDFQKIFKIGDRLYLGLTGLATDVQTLLERLRF-RKNLYELREEREIKPE   85 (204)
T ss_pred             cCceEEEEeCCceEEEEeccccceeeeeeeccchhheecCCeeEEeccccchhHHHHHHHHHH-HHhHHHhhhhcccCcH
Confidence            799999999999999999999887777889999999999999999999999999999999997 4788999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCcceEEEEEEEE-CCcEEEEEECCCCcee-eeCeEEEccchHhhHHHHhhhcCCCCCHHHHH
Q 026175          106 ELHSYLTRVMYNRRNKFDPLWNSLVLGGVK-NGQKYLGMVSMIGVNF-EDSHVATGFGNHLARPILRDEWHENLSYEDGV  183 (242)
Q Consensus       106 ~la~~l~~~~~~~r~~~rP~~vs~lvaG~D-~~~p~Ly~idp~G~~~-~~~~~aiG~g~~~a~~~Le~~~~~~~s~eeai  183 (242)
                      .++++++..+|++|  +-||.+..+|||+| +++|+|...|..|+.. ..+|++.|.++...++++|..|+|+|+.|+..
T Consensus        86 ~~s~mvS~~lYekR--fgpYf~~PvVAGl~~~~kPfIc~mD~IGc~~~~~DFVvsGTa~e~L~GmCE~ly~pnmepd~LF  163 (204)
T KOG0180|consen   86 TFSSMVSSLLYEKR--FGPYFTEPVVAGLDDDNKPFICGMDLIGCIDAPKDFVVSGTASEQLYGMCEALYEPNMEPDELF  163 (204)
T ss_pred             HHHHHHHHHHHHhh--cCCcccceeEeccCCCCCeeEeecccccCcCccCCeEEecchHHHHHHHHHHhcCCCCCHHHHH
Confidence            99999999999999  67999999999998 6899999999999964 57999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcccCCCCcEEEEEEcCCCeE
Q 026175          184 KLLEKCMRVLLYRDRSAVNKLQIAKITEEGTT  215 (242)
Q Consensus       184 ~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g~~  215 (242)
                      +.+.++|-++.+||+++|....|.+|+||.++
T Consensus       164 etisQa~Lna~DRDalSGwGa~vyiI~kdkv~  195 (204)
T KOG0180|consen  164 ETISQALLNAVDRDALSGWGAVVYIITKDKVT  195 (204)
T ss_pred             HHHHHHHHhHhhhhhhccCCeEEEEEccchhh
Confidence            99999999999999999999999999999854

>PRK05456 ATP-dependent protease subunit HslV; Provisional

Probab=100.00  E-value=3.2e-32  Score=222.12  Aligned_cols=167  Identities=17%  Similarity=0.221  Sum_probs=145.6

Q ss_pred             CceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEe-cCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCHH
Q 026175           27 GTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPI-GKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPK  105 (242)
Q Consensus        27 g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~~  105 (242)
                      |+|+|||+++||||||+|+|.+.|.++.+++.+||++| +++++|++||..+|++.|.+.++.+ ++.|+.  +  + ++
T Consensus         1 gtTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~KI~~i~~d~i~~~~aG~~aD~q~l~~~l~~~-~~~y~~--~--~-~~   74 (172)
T PRK05456          1 GTTILAVRRNGKVAIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAK-LEEHQG--N--L-LR   74 (172)
T ss_pred             CcEEEEEEECCEEEEEECCceEeCcEEEcCCCceEEEeCCCCEEEEEeccHHHHHHHHHHHHHH-HHHccC--c--c-HH
Confidence            79999999999999999999999999999999999999 9999999999999999999999984 777652  2  2 46


Q ss_pred             HHHHHHHHHHHhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeee--CeEEEccchHhhHHHHhhhcC-CCCCHHHH
Q 026175          106 ELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFED--SHVATGFGNHLARPILRDEWH-ENLSYEDG  182 (242)
Q Consensus       106 ~la~~l~~~~~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~--~~~aiG~g~~~a~~~Le~~~~-~~~s~eea  182 (242)
                      ..++++...... + ..+|+.+++|++  |.  |+||.+||.|+..+.  ++.|+|||+.+++++|+++|+ ++|   ||
T Consensus        75 ~~a~l~~~l~~~-~-~~~~l~~~~lv~--d~--~~ly~id~~G~~~~~~~~~~a~GSGs~~a~g~ld~~y~~~~m---eA  145 (172)
T PRK05456         75 AAVELAKDWRTD-R-YLRRLEAMLIVA--DK--EHSLIISGNGDVIEPEDGIIAIGSGGNYALAAARALLENTDL---SA  145 (172)
T ss_pred             HHHHHHHHHHhc-c-CCCccEEEEEEE--cC--CcEEEECCCCcEeccCCCeEEEecCHHHHHHHHHHhhhcCCC---CH
Confidence            666665443211 1 136788999994  33  799999999999766  799999999999999999999 999   99


Q ss_pred             HHHHHHHHHHHHhcccCCCCcEEEEE
Q 026175          183 VKLLEKCMRVLLYRDRSAVNKLQIAK  208 (242)
Q Consensus       183 i~l~~~~l~~~~~~d~~s~~~i~v~i  208 (242)
                      ++++++|++.+.+||..++++|+|-.
T Consensus       146 ~~la~kai~~A~~Rd~~sg~~i~v~~  171 (172)
T PRK05456        146 EEIAEKALKIAADICIYTNHNITIEE  171 (172)
T ss_pred             HHHHHHHHHHHHHhCeeCCCcEEEEE
Confidence            99999999999999999999998864

>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome

Probab=99.98  E-value=4.5e-31  Score=214.22  Aligned_cols=165  Identities=15%  Similarity=0.156  Sum_probs=142.2

Q ss_pred             ceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecC-ceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCHHH
Q 026175           28 TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGK-HSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKE  106 (242)
Q Consensus        28 ~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~-~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~~~  106 (242)
                      +|+|||+++||||||+|+|.+.|.++.+++.+||++|++ |++|+++|..+|+++|.++++.+ ++.|+.+.++     .
T Consensus         1 tTivgi~~~dgVvlaaD~r~t~G~~v~~~~~~Ki~~i~d~~i~~~~aG~~aD~~~l~~~~~~~-~~~y~~~~~~-----~   74 (171)
T cd01913           1 TTILAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVIAGFAGSTADAFTLFERFEAK-LEQYPGNLLR-----A   74 (171)
T ss_pred             CeEEEEEECCEEEEEECCceEeccEEEcCCcceEEEeCCCCEEEEecccHHHHHHHHHHHHHH-HHHhhchHHH-----H
Confidence            699999999999999999999999999999999999999 99999999999999999999984 8888876563     4


Q ss_pred             HHHHHHHHHHhhcCCCCCcc-eEEEEEEEECCcEEEEEECCCCceeeeC--eEEEccchHhhHHHHhhhcCCC-CCHHHH
Q 026175          107 LHSYLTRVMYNRRNKFDPLW-NSLVLGGVKNGQKYLGMVSMIGVNFEDS--HVATGFGNHLARPILRDEWHEN-LSYEDG  182 (242)
Q Consensus       107 la~~l~~~~~~~r~~~rP~~-vs~lvaG~D~~~p~Ly~idp~G~~~~~~--~~aiG~g~~~a~~~Le~~~~~~-~s~eea  182 (242)
                      +++++...+ ..+  ++|+. +.+|++++    ++||.+||.|...+.+  +.++|||+.+++++||..|+++ ||   +
T Consensus        75 aa~l~~~l~-~~~--~~~~l~a~~iv~~~----~~ly~id~~G~~ie~~~~~~a~GSGS~ya~g~ld~~yk~~~ms---~  144 (171)
T cd01913          75 AVELAKDWR-TDR--YLRRLEAMLIVADK----EHTLLISGNGDVIEPDDGIAAIGSGGNYALAAARALLDHTDLS---A  144 (171)
T ss_pred             HHHHHHHHH-hcc--CcCceEEEEEEeCC----CcEEEECCCCCEeccCCCeEEEeCCHHHHHHHHHHhhccCCCC---H
Confidence            455544443 222  34555 66666543    3999999999999984  9999999999999999999995 99   5


Q ss_pred             HHHHHHHHHHHHhcccCCCCcEEEEE
Q 026175          183 VKLLEKCMRVLLYRDRSAVNKLQIAK  208 (242)
Q Consensus       183 i~l~~~~l~~~~~~d~~s~~~i~v~i  208 (242)
                      .+++.++++.+.+||..++++|+|-.
T Consensus       145 ~~la~~Av~~A~~rd~~tg~~i~~~~  170 (171)
T cd01913         145 EEIARKALKIAADICIYTNHNITVEE  170 (171)
T ss_pred             HHHHHHHHHHHHhhCcccCCCEEEEe
Confidence            69999999999999999999998864

HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.

>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit

Probab=99.97  E-value=1.7e-30  Score=210.83  Aligned_cols=165  Identities=16%  Similarity=0.194  Sum_probs=141.5

Q ss_pred             ceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEe-cCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCHHH
Q 026175           28 TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPI-GKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKE  106 (242)
Q Consensus        28 ~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~~~  106 (242)
                      +|+|||+++||||||+|+|.+.|.++.+++.+||++| ++|++|+++|..+|+++|.++++.+ ++.|+...     .+.
T Consensus         1 tTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~Ki~~i~~d~i~~~~aG~~aD~q~l~~~~~~~-~~~y~~~~-----~~~   74 (171)
T TIGR03692         1 TTILAVRRNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAK-LEEYQGNL-----TRA   74 (171)
T ss_pred             CeEEEEEECCEEEEEECCceEeceEEEcCCCCeEEEeCCCCEEEEecchHHHHHHHHHHHHHH-HHHccCch-----HHH
Confidence            6999999999999999999999999999999999999 5999999999999999999999984 77766522     467


Q ss_pred             HHHHHHHHHHhhcCCCCC-cceEEEEEEEECCcEEEEEECCCCceeee--CeEEEccchHhhHHHHhhhc-CCCCCHHHH
Q 026175          107 LHSYLTRVMYNRRNKFDP-LWNSLVLGGVKNGQKYLGMVSMIGVNFED--SHVATGFGNHLARPILRDEW-HENLSYEDG  182 (242)
Q Consensus       107 la~~l~~~~~~~r~~~rP-~~vs~lvaG~D~~~p~Ly~idp~G~~~~~--~~~aiG~g~~~a~~~Le~~~-~~~~s~eea  182 (242)
                      +++++++.. ..+  ++| +.+.+|++|+    ++||.+||.|.+.+.  ++.++|||+.+++++||..| +++|+   |
T Consensus        75 ~a~l~~~~~-~~~--~~~~l~a~~iv~~~----~~ly~i~~~G~~ie~~~~~~a~GSGS~~a~g~ld~~y~~~~~s---a  144 (171)
T TIGR03692        75 AVELAKDWR-TDR--YLRRLEAMLIVADK----ETSLLISGTGDVIEPEDGIAAIGSGGNYALAAARALLRNTDLS---A  144 (171)
T ss_pred             HHHHHHHHh-hcc--cccccEEEEEEEcC----CCEEEEcCCCcEeccCCCeEEEeCCHHHHHHHHHHhhhcCCCC---H
Confidence            777776631 111  233 3466776543    499999999999996  69999999999999999999 57788   9


Q ss_pred             HHHHHHHHHHHHhcccCCCCcEEEEE
Q 026175          183 VKLLEKCMRVLLYRDRSAVNKLQIAK  208 (242)
Q Consensus       183 i~l~~~~l~~~~~~d~~s~~~i~v~i  208 (242)
                      ++++.++++.+.+||..++++|+|-.
T Consensus       145 ~~la~~Av~~A~~rd~~sg~~i~v~~  170 (171)
T TIGR03692       145 EEIAREALKIAADICIYTNHNITIEE  170 (171)
T ss_pred             HHHHHHHHHHHHhhCccCCCCEEEEe
Confidence            99999999999999999999998864

The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.

>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid

Probab=99.97  E-value=9.6e-29  Score=197.20  Aligned_cols=162  Identities=26%  Similarity=0.319  Sum_probs=152.6

Q ss_pred             ceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 026175           28 TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKEL  107 (242)
Q Consensus        28 ~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~~~l  107 (242)
                      +|+|||+++|||+||+|++.+.+......+.+|++.++++++++++|..+|++.+.+++++ .++.|+++++.++++..+
T Consensus         1 ~t~i~i~~~~gvila~d~~~~~~~~~~~~~~~ki~~~~~~~~~~~sG~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~   79 (164)
T cd01901           1 STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLRE-ALQLYRLRYGEPISVVAL   79 (164)
T ss_pred             CcEEEEEeCCEEEEEEecccCccCeecCCCcceEEEecCCeEEEEecChHHHHHHHHHHHH-HHHHHHHHHCCCCCHHHH
Confidence            5899999999999999999987766657899999999999999999999999999999998 488899999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeee-CeEEEccchHhhHHHHhhhcCCCCCHHHHHHHH
Q 026175          108 HSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFED-SHVATGFGNHLARPILRDEWHENLSYEDGVKLL  186 (242)
Q Consensus       108 a~~l~~~~~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~-~~~aiG~g~~~a~~~Le~~~~~~~s~eeai~l~  186 (242)
                      ++.+++.++..+. +||+++++|++|+|+++|+||.+||+|.+.+. .++++|+++..+.++|++.++++|+.+|+++++
T Consensus        80 ~~~~~~~~~~~~~-~~p~~~~~iiag~~~~~~~l~~id~~g~~~~~~~~~~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~  158 (164)
T cd01901          80 AKELAKLLQVYTQ-GRPFGVNLIVAGVDEGGGNLYYIDPSGPVIENPGAVATGSRSQRAKSLLEKLYKPDMTLEEAVELA  158 (164)
T ss_pred             HHHHHHHHHHhcC-CCCcceEEEEEEEcCCCCEEEEECCCcCEeecCcEEEECCCCHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            9999999977654 79999999999999889999999999999999 999999999999999999999999999999999


Q ss_pred             HHHHH
Q 026175          187 EKCMR  191 (242)
Q Consensus       187 ~~~l~  191 (242)
                      .+||+
T Consensus       159 ~~~l~  163 (164)
T cd01901         159 LKALK  163 (164)
T ss_pred             HHHHh
Confidence            99985

N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t

>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.60  E-value=1.7e-14  Score=113.60  Aligned_cols=170  Identities=18%  Similarity=0.228  Sum_probs=131.7

Q ss_pred             ccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecC-ceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCC-
Q 026175           25 VTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGK-HSLLGASGEISDFQELLRNLDELILYDNMWDDGNSL-  102 (242)
Q Consensus        25 ~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~-~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i-  102 (242)
                      -++||+|+++-++-|+||+|.++|.|..+...+..|+.+|.+ .++.|++|.++|+..|.+.+.. .++.|.   |.-. 
T Consensus         2 ~h~TTiv~vr~~gkv~iagDGQVtlG~tvmK~narKvRkl~~gkvlaGFAGstADaftLfe~fe~-kle~~~---g~L~r   77 (178)
T COG5405           2 FHMTTIVAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEA-KLEQYQ---GDLFR   77 (178)
T ss_pred             ceeEEEEEEeeCCeEEEecCceEeecceeeeccHHHHHHHcCCcEEEEecccchhHHHHHHHHHH-HHHHcc---CcHHH
Confidence            378999999999999999999999999999999999888876 7999999999999999999987 366543   2211 


Q ss_pred             CHHHHHHHHHHHHHhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceee--eCeEEEccchHhhHHHHhhhcC-CCCCH
Q 026175          103 GPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFE--DSHVATGFGNHLARPILRDEWH-ENLSY  179 (242)
Q Consensus       103 ~~~~la~~l~~~~~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~--~~~~aiG~g~~~a~~~Le~~~~-~~~s~  179 (242)
                      ..-.+++..+.--|-     |-+..-+|++  |+  -.+|-+...|-..+  .+..|||||..++++.....++ +++| 
T Consensus        78 aavelaKdwr~Dk~l-----r~LEAmllVa--d~--~~il~isG~gdV~epe~~~~aIGSGgnyAl~AarAl~~~~~ls-  147 (178)
T COG5405          78 AAVELAKDWRTDKYL-----RKLEAMLLVA--DK--THILIITGNGDVIEPEDDIIAIGSGGNYALSAARALMENTELS-  147 (178)
T ss_pred             HHHHHHHhhhhhhHH-----HHHhhheeEe--CC--CcEEEEecCcceecCCCCeEEEcCCchHHHHHHHHHHhccCCC-
Confidence            233444444433232     3366667776  33  35666777887665  3589999999999998888875 4788 


Q ss_pred             HHHHHHHHHHHHHHHhcccCCCCcEEEEEEc
Q 026175          180 EDGVKLLEKCMRVLLYRDRSAVNKLQIAKIT  210 (242)
Q Consensus       180 eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~  210 (242)
                        |.+++.++|+.+.+-+..++++|.|..+.
T Consensus       148 --A~eIa~~sl~iA~eiciyTN~ni~ve~l~  176 (178)
T COG5405         148 --AREIAEKSLKIAGDICIYTNHNIVVEELR  176 (178)
T ss_pred             --HHHHHHHHHhhhheEEEecCCcEEEEEee
Confidence              66689999999988788888888887664

>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]

Probab=99.32  E-value=2.7e-11  Score=98.96  Aligned_cols=184  Identities=19%  Similarity=0.201  Sum_probs=141.6

Q ss_pred             CceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEec---Cc-eEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCC
Q 026175           27 GTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIG---KH-SLLGASGEISDFQELLRNLDELILYDNMWDDGNSL  102 (242)
Q Consensus        27 g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~---~~-i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i  102 (242)
                      ++.|||++-..|.|+++|+|...|.- ..+..+|+|...   ++ +++..+|..+-.+.+++.+.+ ..+   .+.+..+
T Consensus         1 MTYCv~l~l~~GlVf~sDsRTNAGvD-~istfkKl~~~~~pGdRvlvl~taGNLA~tQaV~~ll~e-~~~---~d~~~~L   75 (255)
T COG3484           1 MTYCVGLILDFGLVFGSDSRTNAGVD-YISTFKKLFVFELPGDRVLVLCTAGNLAITQAVLHLLDE-RIQ---RDDGDSL   75 (255)
T ss_pred             CceEEEEEeccceEEecccccccCch-HHHHHHHHhhccCCCceEEEEEecCccHHHHHHHHHHHH-Hhh---ccchhhh
Confidence            57899999999999999999764432 234667776543   33 677889999999999999876 333   2233333


Q ss_pred             ----CHHHHHHHHHHHH---Hhhc-----CCCCCcceEEEEEEEE-CCcEEEEEECCCCceee----eCeEEEccchHhh
Q 026175          103 ----GPKELHSYLTRVM---YNRR-----NKFDPLWNSLVLGGVK-NGQKYLGMVSMIGVNFE----DSHVATGFGNHLA  165 (242)
Q Consensus       103 ----~~~~la~~l~~~~---~~~r-----~~~rP~~vs~lvaG~D-~~~p~Ly~idp~G~~~~----~~~~aiG~g~~~a  165 (242)
                          ++-..+.++....   +.+-     +..--|.||+|++|.= .+.|.||.+-|.|++.+    .+|.-+|. ..+-
T Consensus        76 ~n~~sm~eattlvgetvrEv~~rds~~leka~~dfn~sfllGGQI~G~pp~Ly~IYpqGNFIqaT~etpf~QiGE-tKYG  154 (255)
T COG3484          76 LNIPSMYEATTLVGETVREVQARDSPALEKAGIDFNCSFLLGGQIKGEPPRLYLIYPQGNFIQATPETPFLQIGE-TKYG  154 (255)
T ss_pred             hcchhHHHHHHHHHHHHHHHHhccCchhhccCcceeEEEEEcceecCCCceeEEEccCCCeeecCCCCceeEccc-cccC
Confidence                4555555555433   2221     0112388999999986 45689999999999876    48999999 5679


Q ss_pred             HHHHhhhcCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCeEE
Q 026175          166 RPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTI  216 (242)
Q Consensus       166 ~~~Le~~~~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g~~~  216 (242)
                      +++|++.+..+++++|+.+.++-+|....+.+...|-++++.++.+|.++.
T Consensus       155 KPildR~i~~~~pLeea~kcaLvS~DSTlkSNiSVGlPldLl~~e~ds~~v  205 (255)
T COG3484         155 KPILDRTITYDTPLEEAAKCALVSFDSTLKSNISVGLPLDLLVYEADSFSV  205 (255)
T ss_pred             chhhhhhhhccCCHHHHhhheEEecchhhhccccccCCceeEEEeccceee
Confidence            999999999999999999999999999999898889999999999997554

>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.24  E-value=0.058  Score=44.52  Aligned_cols=153  Identities=17%  Similarity=0.260  Sum_probs=90.9

Q ss_pred             CceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCHHH
Q 026175           27 GTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKE  106 (242)
Q Consensus        27 g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~~~  106 (242)
                      |+.+||..+++|+|||.|+|.                      ++|-|.-.....|-+         ..| .|.--+=+.
T Consensus         1 MSLII~y~GknGaViaGDkR~----------------------I~F~G~~~~re~LEe---------eLY-sG~IktdeE   48 (194)
T PF09894_consen    1 MSLIIAYYGKNGAVIAGDKRN----------------------IAFRGDEEKREKLEE---------ELY-SGKIKTDEE   48 (194)
T ss_pred             CeEEEEEecCCCcEEecccee----------------------eeecCCHHHHHHHHH---------HHh-CCccCCHHH
Confidence            578999999999999999982                      134555444332222         112 354445666


Q ss_pred             HHHHHHHHH-----HhhcCCCCCcceEEEEEEEE------CCcEEEEEEC-------CCCceeee-------CeEEEccc
Q 026175          107 LHSYLTRVM-----YNRRNKFDPLWNSLVLGGVK------NGQKYLGMVS-------MIGVNFED-------SHVATGFG  161 (242)
Q Consensus       107 la~~l~~~~-----~~~r~~~rP~~vs~lvaG~D------~~~p~Ly~id-------p~G~~~~~-------~~~aiG~g  161 (242)
                      |.+....+=     ...|...+-.+= +|++-+-      ...-++|-.-       -.|.-...       .....|..
T Consensus        49 L~kkA~Elgv~i~I~D~r~KV~~~~~-vlvGEV~s~~g~~skRRRiY~t~g~~~Ivei~~~~i~~~~~g~~sgiIVfGNk  127 (194)
T PF09894_consen   49 LLKKAEELGVKIKITDDREKVRKIGD-VLVGEVTSISGKDSKRRRIYATKGKYAIVEIENDEITNKSRGEGSGIIVFGNK  127 (194)
T ss_pred             HHHHHHHcCCEEEEecCchheEEeCC-EEEEEEEEEcCccceeeEEEecCCCEEEEEecCCeEEEEecCCceeEEEECCH
Confidence            766655421     111211222322 3333332      1223454422       12221111       12333421


Q ss_pred             --hHhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCC
Q 026175          162 --NHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEE  212 (242)
Q Consensus       162 --~~~a~~~Le~~~~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~  212 (242)
                        .+.+...|.++|++.|+++++..+...+|+.+...-+.....+++...++.
T Consensus       128 ~~K~ia~~~lkk~~~~k~~l~~i~~i~~~i~~~~a~~tpsvS~~~d~~~~~~~  180 (194)
T PF09894_consen  128 FTKEIANKELKKYWKPKMSLKDIENIFEKIMEEVASKTPSVSKEYDIYITTKK  180 (194)
T ss_pred             HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhcCCCccCcEEEEEeccc
Confidence              245777899999999999999999999999998767777778898887764

They do show distant similarity to NTPases and to nucleic acid binding enzymes.

>COG4079 Uncharacterized protein conserved in archaea [Function unknown]

Probab=95.73  E-value=1.1  Score=38.39  Aligned_cols=152  Identities=20%  Similarity=0.255  Sum_probs=93.9

Q ss_pred             CceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCHHH
Q 026175           27 GTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKE  106 (242)
Q Consensus        27 g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~~~  106 (242)
                      |+.+|+..++||.|||.|+|.-                      ++-|.-.|-..|-+.|         | .|.--+-+.
T Consensus         1 MtLviay~gknGaviaGDrR~i----------------------~frgdee~re~lEekL---------Y-sGeIkteEE   48 (293)
T COG4079           1 MTLVIAYIGKNGAVIAGDRREI----------------------TFRGDEEDREKLEEKL---------Y-SGEIKTEEE   48 (293)
T ss_pred             CeEEEEEecCCCcEEeccceEE----------------------EEecChhHHHHHHHHh---------h-cCccccHHH
Confidence            5788999999999999999821                      2445555533322211         2 466667778


Q ss_pred             HHHHHHHHH----Hh-hcCCCCCcceEEEEEEEECC------cEEEEEECCCCcee--e--------------eCeEEEc
Q 026175          107 LHSYLTRVM----YN-RRNKFDPLWNSLVLGGVKNG------QKYLGMVSMIGVNF--E--------------DSHVATG  159 (242)
Q Consensus       107 la~~l~~~~----~~-~r~~~rP~~vs~lvaG~D~~------~p~Ly~idp~G~~~--~--------------~~~~aiG  159 (242)
                      |+++...+-    .+ -|...|-..=+++++-+..-      .-++|-+-  |+|.  +              ....+.|
T Consensus        49 L~r~aeel~Vki~vtDdr~KVrk~~d~VvvGEV~s~~~~~vkRRRvYAT~--Ga~aIvel~gs~vts~~~g~g~aiIv~G  126 (293)
T COG4079          49 LARKAEELGVKITVTDDRNKVRKRNDGVVVGEVSSVERGIVKRRRVYATA--GAYAIVELRGSEVTSTSQGKGSAIIVFG  126 (293)
T ss_pred             HHHHHHHcCCEEEEEcchHhhhcccCcEEEEEeecccccceeeeEEeecC--CceEEEEecCCeeEeeecCCCceEEEEC
Confidence            877776531    11 12223444334455444321      12344322  3321  1              1223444


Q ss_pred             c--chHhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCC
Q 026175          160 F--GNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEE  212 (242)
Q Consensus       160 ~--g~~~a~~~Le~~~~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~  212 (242)
                      .  -.+.+..+|.+.|.+.++++++.++...+|..+...-+..+...++..+.+.
T Consensus       127 nk~~Ke~aneflk~~l~~k~~lqd~~dal~elfe~vss~tpsVskeydiy~vs~~  181 (293)
T COG4079         127 NKFTKEVANEFLKDNLTKKSKLQDAVDALMELFETVSSKTPSVSKEYDIYQVSSN  181 (293)
T ss_pred             cHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHhhcCCCcccceeEEEEecCC
Confidence            2  1234567899999999999999999999999998666666778999988874

>KOG3361 consensus Iron binding protein involved in Fe-S cluster formation [Energy production and conversion]

Probab=87.82  E-value=0.88  Score=35.38  Aligned_cols=45  Identities=22%  Similarity=0.380  Sum_probs=41.2

Q ss_pred             EEEEECCCCceeeeCeEEEccchHhhHHHHhhhcCCCCCHHHHHHH
Q 026175          140 YLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKL  185 (242)
Q Consensus       140 ~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eeai~l  185 (242)
                      +| .+|-+|...+.+|-..|.|+..+-+.+-..|-.++++|||.++
T Consensus        70 qI-kvd~~g~I~dakFKTFGCGSAIASSS~aTewvkgkt~dea~kI  114 (157)
T KOG3361|consen   70 QI-KVDDSGVIEDAKFKTFGCGSAIASSSLATEWVKGKTLDEALKI  114 (157)
T ss_pred             EE-EECCCCcEEEeeeeecccchHhhhhHHHHHHHccccHHHHHhc
Confidence            44 7888999999999999999999999999999999999999765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	242
3unb_M	219	Mouse Constitutive 20s Proteasome In Complex With P		2e-53
1iru_N	219	Crystal Structure Of The Mammalian 20s Proteasome A		9e-53
1g0u_M	266	A Gated Channel Into The Proteasome Core Particle L		2e-39
1ryp_N	233	Crystal Structure Of The 20s Proteasome From Yeast		1e-38
3h4p_a	219	Proteasome 20s Core Particle From Methanocaldococcu		1e-12
1ya7_H	217	Implications For Interactions Of Proteasome With Pa		6e-09
1pma_B	211	Proteasome From Thermoplasma Acidophilum Length = 2		6e-09
3c91_H	203	Thermoplasma Acidophilum 20s Proteasome With An Ope		1e-07
3unb_I	205	Mouse Constitutive 20s Proteasome In Complex With P		1e-06
1iru_J	205	Crystal Structure Of The Mammalian 20s Proteasome A		6e-06
3h4p_A	264	Proteasome 20s Core Particle From Methanocaldococcu		7e-06
3unb_H	234	Mouse Constitutive 20s Proteasome In Complex With P		5e-05
1ryp_K	198	Crystal Structure Of The 20s Proteasome From Yeast		5e-05
3nzj_H	261	Crystal Structure Of Yeast 20s Proteasome In Comple		8e-05
3unf_H	234	Mouse 20s Immunoproteasome In Complex With Pr-957 L		1e-04
1iru_I	234	Crystal Structure Of The Mammalian 20s Proteasome A		2e-04
3unf_K	204	Mouse 20s Immunoproteasome In Complex With Pr-957 L		5e-04
1j2q_A	237	20s Proteasome In Complex With Calpain-inhibitor I		7e-04

>pdb|3UNB|M Chain M, Mouse Constitutive 20s Proteasome In Complex With Pr-957 Length = 219

Iteration: 1
 Score =  205 bits (521), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 95/209 (45%), Positives = 148/209 (70%), Gaps = 2/209 (0%)
Query: 20  TQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDF 79
           TQ P VTGTSV+ +K+  G+++AADM GSYGS  R++++ RI  +   ++LGASG+ +DF
Sbjct: 1   TQNPMVTGTSVLGVKFDGGVVIAADMLGSYGSLARFRNISRIMRVNDSTMLGASGDYADF 60
Query: 80  QELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQK 139
           Q L + L ++++ + +  DG+S  P+ +HS+LTR MY+RR+K +PLWN++V+GG  +G+ 
Sbjct: 61  QYLKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGES 120
Query: 140 YLGMVSMIGVNFEDSHVATGFGNHLARPILRD--EWHENLSYEDGVKLLEKCMRVLLYRD 197
           +LG V M+GV +E   +ATG+G +LA+P+LR+  E    LS  +  +L+E+CMRVL YRD
Sbjct: 121 FLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARELVERCMRVLYYRD 180
Query: 198 RSAVNKLQIAKITEEGTTISQPYALKTFW 226
             + N+ QIA +TE+G  I  P + +T W
Sbjct: 181 ARSYNRFQIATVTEKGVEIEGPLSAQTNW 209

>pdb|1IRU|N Chain N, Crystal Structure Of The Mammalian 20s Proteasome At 2.75 A Resolution Length = 219

Iteration: 1
 Score =  202 bits (515), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 94/209 (44%), Positives = 147/209 (70%), Gaps = 2/209 (0%)
Query: 20  TQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDF 79
           TQ P VTGTSV+ +K++ G+++AADM GSYGS  R++++ RI  +   ++LGASG+ +DF
Sbjct: 1   TQNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADF 60
Query: 80  QELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQK 139
           Q L + L ++++ + +  DG+S  P+ +HS+LTR MY+RR+K +PLWN++V+GG  +G+ 
Sbjct: 61  QYLKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGES 120
Query: 140 YLGMVSMIGVNFEDSHVATGFGNHLARPILRD--EWHENLSYEDGVKLLEKCMRVLLYRD 197
           +LG V M+GV +E   +ATG+G +LA+P+LR+  E    LS  +   L+E+CMRVL YRD
Sbjct: 121 FLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARDLVERCMRVLYYRD 180
Query: 198 RSAVNKLQIAKITEEGTTISQPYALKTFW 226
             + N+ Q A +TE+G  I  P + +T W
Sbjct: 181 ARSYNRFQTATVTEKGVEIEGPLSTETNW 209

>pdb|1G0U|M Chain M, A Gated Channel Into The Proteasome Core Particle Length = 266

Iteration: 1
 Score =  158 bits (400), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 85/204 (41%), Positives = 131/204 (64%), Gaps = 10/204 (4%)
Query: 16  PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGE 75
           P+  TQ P VTGTSV+++KY +G+++AAD  GSYGS +R+  VER+ P+G ++++G SG+
Sbjct: 30  PMVNTQQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGD 89
Query: 76  ISDFQELLRNLDELIL---YDN-MWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVL 131
           ISD Q + R L +L+    YDN + D   +L P  +  YL  VMY RR+K +PLWN++++
Sbjct: 90  ISDMQHIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIV 149
Query: 132 GGVK-NGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEW-HENLSYEDGVKLLEK- 188
            GV+ NG ++L  V+++GV +    +ATGFG H+A P+LR     E+   +  V++ E+ 
Sbjct: 150 AGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEA 209
Query: 189 ---CMRVLLYRDRSAVNKLQIAKI 209
               MRVL YRD  +     +A I
Sbjct: 210 IVNAMRVLYYRDARSSRNFSLAII 233

>pdb|1RYP|N Chain N, Crystal Structure Of The 20s Proteasome From Yeast At 2.4 Angstroms Resolution Length = 233

Iteration: 1
 Score =  155 bits (393), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 84/200 (42%), Positives = 129/200 (64%), Gaps = 10/200 (5%)
Query: 20  TQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDF 79
           TQ P VTGTSV+++KY +G+++AAD  GSYGS +R+  VER+ P+G ++++G SG+ISD 
Sbjct: 1   TQQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDM 60
Query: 80  QELLRNLDELIL---YDN-MWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVK 135
           Q + R L +L+    YDN + D   +L P  +  YL  VMY RR+K +PLWN++++ GV+
Sbjct: 61  QHIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQ 120
Query: 136 -NGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEW-HENLSYEDGVKLLEK----C 189
            NG ++L  V+++GV +    +ATGFG H+A P+LR     E+   +  V++ E+     
Sbjct: 121 SNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNA 180
Query: 190 MRVLLYRDRSAVNKLQIAKI 209
           MRVL YRD  +     +A I
Sbjct: 181 MRVLYYRDARSSRNFSLAII 200

>pdb|3H4P|AA Chain a, Proteasome 20s Core Particle From Methanocaldococcus Jannaschii Length = 219

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 96/192 (50%), Gaps = 7/192 (3%)
Query: 28  TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNL- 86
           T+ V L   D +++A D   S G+ +  K  +++  I  +  +  +G + D Q ++R L 
Sbjct: 2   TTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLI 61
Query: 87  DELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGG--VKNGQKYLGMV 144
            E  LY      G ++ P    + L+ ++++ R    P    +++GG  +  G K   + 
Sbjct: 62  AEAKLYK--MRTGRNIPPLACATLLSNILHSSR--MFPFLTQIIIGGYDLLEGAKLFSLD 117
Query: 145 SMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKL 204
            + G+N E +  ATG G+ +A  +L   +  ++S E+G+KL    ++  + RD  + N +
Sbjct: 118 PLGGMNEEKTFTATGSGSPIAYGVLEAGYDRDMSVEEGIKLALNALKSAMERDTFSGNGI 177
Query: 205 QIAKITEEGTTI 216
            +A IT++G  I
Sbjct: 178 SLAVITKDGVKI 189

>pdb|1YA7|H Chain H, Implications For Interactions Of Proteasome With Pan And Pa700 From The 1.9 A Structure Of A Proteasome-11s Activator Complex Length = 217

Iteration: 1
 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 95/200 (47%), Gaps = 16/200 (8%)
Query: 26  TGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRN 85
           TGT+ V +  KD ++MA +   +  + I +K+ +++  I  ++ +  +G + D Q L+R 
Sbjct: 7   TGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRY 66
Query: 86  LD-ELILYD-----NMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQK 139
           +  EL LY      NM        P E  + L   M N+  K+ P    L++GG+     
Sbjct: 67  MKAELELYRLQRRVNM--------PIEAVATLLSNMLNQV-KYMPYMVQLLVGGIDTAPH 117
Query: 140 YLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRS 199
               +   G + ED + +TG G+     +L  ++ E ++ ++GV L+ + +     RD +
Sbjct: 118 VFS-IDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSA 176
Query: 200 AVNKLQIAKITEEGTTISQP 219
           +   + +A IT +   +  P
Sbjct: 177 SGGMIDVAVITRKDGYVQLP 196

>pdb|1PMA|B Chain B, Proteasome From Thermoplasma Acidophilum Length = 211

Iteration: 1
 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 95/200 (47%), Gaps = 16/200 (8%)
Query: 26  TGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRN 85
           TGT+ V +  KD ++MA +   +  + I +K+ +++  I  ++ +  +G + D Q L+R 
Sbjct: 7   TGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRY 66
Query: 86  LD-ELILYD-----NMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQK 139
           +  EL LY      NM        P E  + L   M N+  K+ P    L++GG+     
Sbjct: 67  MKAELELYRLQRRVNM--------PIEAVATLLSNMLNQV-KYMPYMVQLLVGGIDTAPH 117
Query: 140 YLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRS 199
               +   G + ED + +TG G+     +L  ++ E ++ ++GV L+ + +     RD +
Sbjct: 118 VFS-IDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSA 176
Query: 200 AVNKLQIAKITEEGTTISQP 219
           +   + +A IT +   +  P
Sbjct: 177 SGGMIDVAVITRKDGYVQLP 196

>pdb|3C91|H Chain H, Thermoplasma Acidophilum 20s Proteasome With An Open Gate Length = 203

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 93/198 (46%), Gaps = 16/198 (8%)
Query: 28  TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLD 87
           T+ V +  KD ++MA +   +  + I +K+ +++  I  ++ +  +G + D Q L+R + 
Sbjct: 1   TTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMK 60
Query: 88  -ELILYD-----NMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYL 141
            EL LY      NM        P E  + L   M N+  K+ P    L++GG+       
Sbjct: 61  AELELYRLQRRVNM--------PIEAVATLLSNMLNQ-VKYMPYMVQLLVGGIDTAPHVF 111
Query: 142 GMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAV 201
             +   G + ED + +TG G+     +L  ++ E ++ ++GV L+ + +     RD ++ 
Sbjct: 112 S-IDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSASG 170
Query: 202 NKLQIAKITEEGTTISQP 219
             + +A IT +   +  P
Sbjct: 171 GMIDVAVITRKDGYVQLP 188

>pdb|3UNB|I Chain I, Mouse Constitutive 20s Proteasome In Complex With Pr-957 Length = 205

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 85/184 (46%), Gaps = 10/184 (5%)
Query: 27  GTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNL 86
           G +V+A+K K+ + +AAD      + +     ++I P+G    +G +G  +D Q + + L
Sbjct: 8   GGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRL 67
Query: 87  D-ELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGV--KNGQKYLGM 143
              L LY+    +G  + P  L S +  ++Y +R  F P +   V+ G+  K  + ++  
Sbjct: 68  KFRLNLYE--LKEGRQIKPYTLMSMVANLLYEKR--FGPYYTEPVIAGLDPKTFKPFICS 123
Query: 144 VSMIGVNF-EDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVN 202
           + +IG     D  V +G  +     +    W  N+  E   + + + M  L   DR AV+
Sbjct: 124 LDLIGCPMVTDDFVVSGTCSEQMYGMCESLWEPNMDPEHLFETISQAM--LNAVDRDAVS 181
Query: 203 KLQI 206
            + +
Sbjct: 182 GMGV 185

>pdb|1IRU|J Chain J, Crystal Structure Of The Mammalian 20s Proteasome At 2.75 A Resolution Length = 205

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 84/184 (45%), Gaps = 10/184 (5%)
Query: 27  GTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNL 86
           G +V+A+K K+ + +AAD      + +     ++I P+G    +G +G  +D Q + + L
Sbjct: 8   GGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRL 67
Query: 87  D-ELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGV--KNGQKYLGM 143
              L LY+    +G  + P  L S +  ++Y +R  F P +   V+ G+  K  + ++  
Sbjct: 68  KFRLNLYE--LKEGRQIKPYTLMSMVANLLYEKR--FGPYYTEPVIAGLDPKTFKPFICS 123
Query: 144 VSMIGVNF-EDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVN 202
           + +IG     D  V +G        +    W  N+  +   + + + M  L   DR AV+
Sbjct: 124 LDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDHLFETISQAM--LNAVDRDAVS 181
Query: 203 KLQI 206
            + +
Sbjct: 182 GMGV 185

>pdb|3H4P|A Chain A, Proteasome 20s Core Particle From Methanocaldococcus Jannaschii Length = 264

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/162 (22%), Positives = 74/162 (45%), Gaps = 6/162 (3%)
Query: 27  GTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELL-RN 85
           GT+ + +  KDG+++A D   +    ++ +S+E+I  I  H     SG ++D + L+ R 
Sbjct: 38  GTTAIGIACKDGVVLAVDRRIT-SKLVKIRSIEKIFQIDDHVAAATSGLVADARVLIDRA 96
Query: 86  LDELILYDNMWDDGNSLGPKELHSYLTRV--MYNRRNKFDPLWNSLVLGGVKNGQKYLGM 143
             E  +Y   +  G  +  + L   +  +   Y +     P   SL++ G+   +  L  
Sbjct: 97  RLEAQIYRLTY--GEEISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDKNEARLFE 154
Query: 144 VSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKL 185
               G   E    A G G  +   +L  E+ ++++ ++G++L
Sbjct: 155 TDPSGALIEYKATAIGSGRPVVMELLEKEYRDDITLDEGLEL 196

>pdb|3UNB|H Chain H, Mouse Constitutive 20s Proteasome In Complex With Pr-957 Length = 234

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/206 (20%), Positives = 89/206 (43%), Gaps = 26/206 (12%)
Query: 28  TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLD 87
           T++  + YKDGI++ AD   + G  +  K+  +I  I  +     +G  +D      ++ 
Sbjct: 1   TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAAD-----TDMT 55
Query: 88  ELILYDNMWDDGNSLGPKELHSYLT----RVMYNRRNKFDPLWN-------SLVLGGVKN 136
             ++  N+          ELHS  T    RV+   R     L+        +LVLGGV  
Sbjct: 56  TQLISSNL----------ELHSLTTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVDV 105
Query: 137 GQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYR 196
              +L  +   G   +  +V  G G+  A  +  D++  ++  E+  KL+ + +   ++ 
Sbjct: 106 TGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKKLVSEAIAAGIFN 165
Query: 197 DRSAVNKLQIAKITEEGTTISQPYAL 222
           D  + + + +  I++      +P+++
Sbjct: 166 DLGSGSNIDLCVISKSKLDFLRPFSV 191

>pdb|1RYP|K Chain K, Crystal Structure Of The 20s Proteasome From Yeast At 2.4 Angstroms Resolution Length = 198

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/169 (18%), Positives = 80/169 (47%), Gaps = 3/169 (1%)
Query: 30  VVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDEL 89
           ++ ++ +D +++A+    + G ++   S ++ + +  H+L+  +GE  D  +    +   
Sbjct: 4   ILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQAN 63
Query: 90  ILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGV--KNGQKYLGMVSMI 147
           I   ++ +D   L P+ + S++ + +        P   ++++GG   K  +  L  +  +
Sbjct: 64  IQLYSIRED-YELSPQAVSSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDYL 122
Query: 148 GVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYR 196
           G   E  + A G+       +L   +  +++ E+G+ LL+ C++ L  R
Sbjct: 123 GTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLDLLKLCVQELEKR 171

>pdb|3NZJ|H Chain H, Crystal Structure Of Yeast 20s Proteasome In Complex With Ligand 2a Length = 261

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 33/174 (18%), Positives = 80/174 (45%), Gaps = 8/174 (4%)
Query: 26  TGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRN 85
           TGT++V +K+ +G+++AAD   + G  +  K+  ++  I        +G  +D + + + 
Sbjct: 28  TGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQL 87
Query: 86  LDELILYDNMWDDGNSLGPKELHS--YLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGM 143
           +   I   +++    S  P+ + +   L + ++  +         L++ GV     +L  
Sbjct: 88  IGSNIELHSLY---TSREPRVVSALQMLKQHLFKYQGHIGAY---LIVAGVDPTGSHLFS 141
Query: 144 VSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRD 197
           +   G      +++ G G+  A  +L   W ++L+ E+ +KL    ++  ++ D
Sbjct: 142 IHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWND 195

>pdb|3UNF|H Chain H, Mouse 20s Immunoproteasome In Complex With Pr-957 Length = 234

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/198 (22%), Positives = 80/198 (40%), Gaps = 6/198 (3%)
Query: 28  TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLD 87
           T++  L ++DG+++ AD   +  S +  KS E+I  I        +G  +D +   R   
Sbjct: 1   TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTR--- 57
Query: 88  ELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFD-PLWNSLVLGGVKNGQKYLGMVSM 146
             +    M     S G +   + +TR++     ++   +  SLV+GGV      L  V  
Sbjct: 58  --MAASKMELHALSTGREPRVATVTRILRQTLFRYQGHVGASLVVGGVDLNGPQLYEVHP 115
Query: 147 IGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQI 206
            G        A G G   A  +L D +  N++ E   +LL + +   +  D  +   +  
Sbjct: 116 HGSYSRLPFTALGSGQGAAVALLEDRFQPNMTLEAAQELLVEAITAGILSDLGSGGNVDA 175
Query: 207 AKITEEGTTISQPYALKT 224
             IT  G  + +  +  T
Sbjct: 176 CVITAGGAKLQRALSTPT 193

>pdb|1IRU|I Chain I, Crystal Structure Of The Mammalian 20s Proteasome At 2.75 A Resolution Length = 234

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/206 (20%), Positives = 87/206 (42%), Gaps = 26/206 (12%)
Query: 28  TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLD 87
           T++  + YKDGI++ AD   + G  +  K+  +I  I  +     +G  +D      ++ 
Sbjct: 1   TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAAD-----TDMT 55
Query: 88  ELILYDNMWDDGNSLGPKELHSY----LTRVMYNRRNKFDPLWN-------SLVLGGVKN 136
             ++  N+          ELHS     L RV+   R     L+        +LVLGGV  
Sbjct: 56  TQLISSNL----------ELHSLSTGRLPRVVTANRMLKQMLFRYRGYIGAALVLGGVDV 105
Query: 137 GQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYR 196
              +L  +   G   +  +V  G G+  A  +  D++  ++  E+   L+ + +   ++ 
Sbjct: 106 TGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSEAIAAGIFN 165
Query: 197 DRSAVNKLQIAKITEEGTTISQPYAL 222
           D  + + + +  I++      +PY +
Sbjct: 166 DLGSGSNIDLCVISKNKLDFLRPYTV 191

>pdb|3UNF|K Chain K, Mouse 20s Immunoproteasome In Complex With Pr-957 Length = 204

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/189 (22%), Positives = 79/189 (41%), Gaps = 9/189 (4%)
Query: 28  TSVVALKYKDGILMAAD---MGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLR 84
           T+ +A K++ G+++A D     GSY S++R   V  I P    ++ G + +   ++ LL 
Sbjct: 1   TTTLAFKFQHGVIVAVDSRATAGSYISSLRMNKVIEINPYLLGTMSGCAADCQYWERLLA 60
Query: 85  NLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMV 144
               L    N    G  +        L+ +M   R     +  S++ G  K G   L  V
Sbjct: 61  KECRLYYLRN----GERISVSAASKLLSNMMLQYRGMGLSM-GSMICGWDKKGPG-LYYV 114
Query: 145 SMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKL 204
              G        +TG GN  A  ++   + ++LS E+   L  + +    +RD  +   +
Sbjct: 115 DDNGTRLSGQMFSTGSGNTYAYGVMDSGYRQDLSPEEAYDLGRRAIAYATHRDNYSGGVV 174
Query: 205 QIAKITEEG 213
            +  + E+G
Sbjct: 175 NMYHMKEDG 183

>pdb|1J2Q|A Chain A, 20s Proteasome In Complex With Calpain-inhibitor I From Archaeoglobus Fulgidus Length = 237

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 73/163 (44%), Gaps = 9/163 (5%)
Query: 27  GTSVVALKYKDGILMAADMGGSYGSTI-RYKSVERIKPIGKHSLLGASGEISDFQELL-R 84
           G + + +K K+G+++ AD     GS +    ++E+I  I +H     SG ++D + L+ R
Sbjct: 25  GATAIGIKCKEGVILIAD--KRVGSKLLEADTIEKIYKIDEHICAATSGLVADARVLIDR 82
Query: 85  NLDELILYDNMWDDGNSLGPKELHSYLT--RVMYNRRNKFDPLWNSLVLGGVKNGQKYLG 142
              E  +    +D+  ++  KEL   +   +  Y +     P   SL++ GV    K L 
Sbjct: 83  ARIEAQINRLTYDEPITV--KELAKKICDFKQQYTQYGGVRPFGVSLLIAGVDEVPK-LY 139
Query: 143 MVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKL 185
                G   E    A G G +        E+ ++LS++D + L
Sbjct: 140 ETDPSGALLEYKATAIGMGRNAVTEFFEKEYRDDLSFDDAMVL 182

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	242
1iru_N	219	20S proteasome; cell cycle, immune response, prote	5e-85
1g0u_M	266	Proteasome component PRE4; ubiquitin, degradation,	6e-79
1ryp_N	233	20S proteasome; multicatalytic proteinase, protein	8e-78
1ryp_K	198	20S proteasome; multicatalytic proteinase, protein	7e-60
1iru_K	201	20S proteasome; cell cycle, immune response, prote	1e-54
1iru_I	234	20S proteasome; cell cycle, immune response, prote	2e-40
1iru_M	213	20S proteasome; cell cycle, immune response, prote	3e-36
1ryp_J	204	20S proteasome; multicatalytic proteinase, protein	1e-27
3nzj_H	261	Proteasome component PUP1; ubiquitin, protein degr	3e-27
1iru_J	205	20S proteasome; cell cycle, immune response, prote	4e-27
1ryp_M	222	20S proteasome; multicatalytic proteinase, protein	9e-26
1ryp_H	205	20S proteasome; multicatalytic proteinase, protein	2e-25
1iru_L	204	20S proteasome; cell cycle, immune response, prote	1e-24
3unf_N	199	Proteasome subunit beta type-9; antigen presentati	3e-24
3nzj_K	287	Proteasome component PRE2; ubiquitin, protein degr	3e-24
1yar_H	217	Proteasome beta subunit; proteasome 20S, PA26 prot	1e-23
1ryp_L	212	20S proteasome; multicatalytic proteinase, protein	2e-23
2jay_A	291	Proteasome; hydrolase; 1.99A {Mycobacterium tuberc	4e-23
3h4p_A	264	Proteasome subunit alpha; core particle, cytoplasm	7e-23
1ryp_I	222	20S proteasome; multicatalytic proteinase, protein	1e-22
1j2q_H	202	Proteasome beta subunit; ubiquitin, CP, hydrolase;	1e-22
1iru_H	205	20S proteasome; cell cycle, immune response, prote	2e-22
1q5r_H	294	Proteasome beta-type subunit 1; proteasome assembl	5e-21
3unf_H	234	Proteasome subunit beta type-10; antigen presentat	3e-20
1q5q_H	235	Proteasome beta-type subunit 1; proteasome assembl	9e-19
1q5q_A	259	Proteasome alpha-type subunit 1; proteasome assemb	5e-13
3mi0_A	248	Proteasome subunit alpha; enzyme inhibitors, lacto	1e-12
2z3b_A	180	ATP-dependent protease HSLV; N-terminal nucleophIl	3e-07
1m4y_A	171	ATP-dependent protease HSLV; N-terminal catalytic	3e-06
1iru_B	233	20S proteasome; cell cycle, immune response, prote	3e-06
1g3k_A	174	ATP-dependent protease HSLV; hydrolase; 1.90A {Hae	6e-06
1j2p_A	246	Alpha-ring, proteasome alpha subunit; hydrolase; 2	7e-06
1yar_A	233	Proteasome alpha subunit; proteasome 20S, PA26 pro	3e-05
1iru_G	254	20S proteasome; cell cycle, immune response, prote	3e-05
1ryp_C	244	20S proteasome; multicatalytic proteinase, protein	1e-04
1ryp_G	244	20S proteasome; multicatalytic proteinase, protein	1e-04
1ryp_E	242	20S proteasome; multicatalytic proteinase, protein	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04
1iru_E	241	20S proteasome; cell cycle, immune response, prote	4e-04

>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M Length = 219

 Score =  251 bits (643), Expect = 5e-85
 Identities = 94/211 (44%), Positives = 147/211 (69%), Gaps = 2/211 (0%)

Query: 20  TQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDF 79
           TQ P VTGTSV+ +K++ G+++AADM GSYGS  R++++ RI  +   ++LGASG+ +DF
Sbjct: 1   TQNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADF 60

Query: 80  QELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQK 139
           Q L + L ++++ + +  DG+S  P+ +HS+LTR MY+RR+K +PLWN++V+GG  +G+ 
Sbjct: 61  QYLKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGES 120

Query: 140 YLGMVSMIGVNFEDSHVATGFGNHLARPILRD--EWHENLSYEDGVKLLEKCMRVLLYRD 197
           +LG V M+GV +E   +ATG+G +LA+P+LR+  E    LS  +   L+E+CMRVL YRD
Sbjct: 121 FLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARDLVERCMRVLYYRD 180

Query: 198 RSAVNKLQIAKITEEGTTISQPYALKTFWGF 228
             + N+ Q A +TE+G  I  P + +T W  
Sbjct: 181 ARSYNRFQTATVTEKGVEIEGPLSTETNWDI 211

>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M* Length = 266

 Score =  237 bits (607), Expect = 6e-79
 Identities = 83/229 (36%), Positives = 132/229 (57%), Gaps = 12/229 (5%)

Query: 12  GPNDPIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLG 71
               P+  TQ P VTGTSV+++KY +G+++AAD  GSYGS +R+  VER+ P+G ++++G
Sbjct: 26  AGASPMVNTQQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVG 85

Query: 72  ASGEISDFQELLRNLDELI----LYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWN 127
            SG+ISD Q + R L +L+      + + D   +L P  +  YL  VMY RR+K +PLWN
Sbjct: 86  ISGDISDMQHIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWN 145

Query: 128 SLVLGGV-KNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWH-----ENLSYED 181
           ++++ GV  NG ++L  V+++GV +    +ATGFG H+A P+LR            + + 
Sbjct: 146 AIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQV 205

Query: 182 GVKLLEKCMRVLLYRDRSAVNKLQIAKITEE-GTTISQPYALKT-FWGF 228
             + +   MRVL YRD  +     +A I +  G T  +   ++   W F
Sbjct: 206 AEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTFKKNLQVENMKWDF 254

>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ... Length = 233

 Score =  233 bits (596), Expect = 8e-78
 Identities = 82/221 (37%), Positives = 130/221 (58%), Gaps = 12/221 (5%)

Query: 20  TQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDF 79
           TQ P VTGTSV+++KY +G+++AAD  GSYGS +R+  VER+ P+G ++++G SG+ISD 
Sbjct: 1   TQQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDM 60

Query: 80  QELLRNLDELI----LYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGV- 134
           Q + R L +L+      + + D   +L P  +  YL  VMY RR+K +PLWN++++ GV 
Sbjct: 61  QHIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQ 120

Query: 135 KNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHE-----NLSYEDGVKLLEKC 189
            NG ++L  V+++GV +    +ATGFG H+A P+LR            + +   + +   
Sbjct: 121 SNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNA 180

Query: 190 MRVLLYRDRSAVNKLQIAKITEE-GTTISQPYALKT-FWGF 228
           MRVL YRD  +     +A I +  G T  +   ++   W F
Sbjct: 181 MRVLYYRDARSSRNFSLAIIDKNTGLTFKKNLQVENMKWDF 221

>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ... Length = 198

 Score =  186 bits (475), Expect = 7e-60
 Identities = 31/198 (15%), Positives = 87/198 (43%), Gaps = 3/198 (1%)

Query: 28  TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLD 87
             ++ ++ +D +++A+    + G ++   S ++ + +  H+L+  +GE  D  +    + 
Sbjct: 2   DIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQ 61

Query: 88  ELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGV--KNGQKYLGMVS 145
             I   ++  +   L P+ + S++ + +        P   ++++GG   K  +  L  + 
Sbjct: 62  ANIQLYSI-REDYELSPQAVSSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQID 120

Query: 146 MIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQ 205
            +G   E  + A G+       +L   +  +++ E+G+ LL+ C++ L  R       + 
Sbjct: 121 YLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLDLLKLCVQELEKRMPMDFKGVI 180

Query: 206 IAKITEEGTTISQPYALK 223
           +  + ++G      +  +
Sbjct: 181 VKIVDKDGIRQVDDFQAQ 198

>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J Length = 201

 Score =  173 bits (440), Expect = 1e-54
 Identities = 36/196 (18%), Positives = 74/196 (37%), Gaps = 2/196 (1%)

Query: 28  TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLD 87
             ++ ++  D +L+A+D   +          +++  + +  LL   GE  D  +    + 
Sbjct: 2   EYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQ 61

Query: 88  ELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGV-KNGQKYLGMVSM 146
           + +    M  +G  L P    ++  R + +      P   +L+L G  ++    L  +  
Sbjct: 62  KNVQLYKM-RNGYELSPTAAANFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYMDY 120

Query: 147 IGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQI 206
           +    +    A G+G  L   IL   +   +S E  V+LL KC+  L  R    +    +
Sbjct: 121 LAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVELLRKCLEELQKRFILNLPTFSV 180

Query: 207 AKITEEGTTISQPYAL 222
             I + G       + 
Sbjct: 181 RIIDKNGIHDLDNISF 196

>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H Length = 234

 Score =  138 bits (349), Expect = 2e-40
 Identities = 39/201 (19%), Positives = 85/201 (42%), Gaps = 6/201 (2%)

Query: 28  TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLD 87
           T++  + YKDGI++ AD   + G  +  K+  +I  I  +     +G  +D     + + 
Sbjct: 1   TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLIS 60

Query: 88  -ELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSM 146
             L L+      G        +  L ++++  R     +  +LVLGGV     +L  +  
Sbjct: 61  SNLELH--SLSTGRLPRVVTANRMLKQMLFRYR---GYIGAALVLGGVDVTGPHLYSIYP 115

Query: 147 IGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQI 206
            G   +  +V  G G+  A  +  D++  ++  E+   L+ + +   ++ D  + + + +
Sbjct: 116 HGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSEAIAAGIFNDLGSGSNIDL 175

Query: 207 AKITEEGTTISQPYALKTFWG 227
             I++      +PY +    G
Sbjct: 176 CVISKNKLDFLRPYTVPNKKG 196

>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L Length = 213

 Score =  126 bits (319), Expect = 3e-36
 Identities = 45/205 (21%), Positives = 97/205 (47%), Gaps = 16/205 (7%)

Query: 23  PYV-TGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQE 81
           PYV  G +++A+  +D  ++A+D   S G +I  +   +   +   +++G SG   D   
Sbjct: 4   PYVFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLT 63

Query: 82  LLRNLD-ELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGV-KNGQK 139
           L + ++  L +Y +   +  ++    + + L+ ++Y+RR  F P +   ++GG+ + G+ 
Sbjct: 64  LTKIIEARLKMYKH--SNNKAMTTGAIAAMLSTILYSRR--FFPYYVYNIIGGLDEEGKG 119

Query: 140 YLGMVSMIGVNFEDSHVATGFGNHLARPIL---------RDEWHENLSYEDGVKLLEKCM 190
            +     +G    DS  A G  + + +P+L         ++  H  LS +  ++L++   
Sbjct: 120 AVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVF 179

Query: 191 RVLLYRDRSAVNKLQIAKITEEGTT 215
                RD    + L+I  +T+EG  
Sbjct: 180 ISAAERDVYTGDALRICIVTKEGIR 204

>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ... Length = 204

 Score =  103 bits (259), Expect = 1e-27
 Identities = 41/198 (20%), Positives = 79/198 (39%), Gaps = 10/198 (5%)

Query: 23  PYV-TGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQE 81
           P    G  VVA+  KD + +A D+     S       E+I   G H  LG +G  +D   
Sbjct: 3   PSSINGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTT 61

Query: 82  LLRNLD-ELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGV--KNGQ 138
           L      +  LY     +  ++ P+     ++  +Y RR  F P +   V+ G+  K+G+
Sbjct: 62  LNEMFRYKTNLYK--LKEERAIEPETFTQLVSSSLYERR--FGPYFVGPVVAGINSKSGK 117

Query: 139 KYLGMVSMIG-VNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRD 197
            ++    +IG ++     + +G  +     +    +  NL  ED  + + + +     RD
Sbjct: 118 PFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPEDLFETISQALLNAADRD 177

Query: 198 RSAVNKLQIAKITEEGTT 215
             +     +  I ++   
Sbjct: 178 ALSGWGAVVYIIKKDEVV 195

>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* Length = 261

 Score =  104 bits (261), Expect = 3e-27
 Identities = 32/204 (15%), Positives = 82/204 (40%), Gaps = 7/204 (3%)

Query: 26  TGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRN 85
           TGT++V +K+ +G+++AAD   + G  +  K+  ++  I        +G  +D + + + 
Sbjct: 28  TGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQL 87

Query: 86  L-DELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMV 144
           +   + L+                  L + ++  +     +   L++ GV     +L  +
Sbjct: 88  IGSNIELHSLYT--SREPRVVSALQMLKQHLFKYQ---GHIGAYLIVAGVDPTGSHLFSI 142

Query: 145 SMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKL 204
              G      +++ G G+  A  +L   W ++L+ E+ +KL    ++  ++ D  + + +
Sbjct: 143 HAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNV 202

Query: 205 QIAKITEEGTT-ISQPYALKTFWG 227
            +  +         + Y       
Sbjct: 203 DVCVMEIGKDAEYLRNYLTPNVRE 226

>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I Length = 205

 Score =  102 bits (257), Expect = 4e-27
 Identities = 42/194 (21%), Positives = 86/194 (44%), Gaps = 8/194 (4%)

Query: 26  TGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRN 85
            G +V+A+K K+ + +AAD      + +     ++I P+G    +G +G  +D Q + + 
Sbjct: 7   NGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQR 66

Query: 86  LD-ELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGV--KNGQKYLG 142
           L   L LY+    +G  + P  L S +  ++Y +R  F P +   V+ G+  K  + ++ 
Sbjct: 67  LKFRLNLYEL--KEGRQIKPYTLMSMVANLLYEKR--FGPYYTEPVIAGLDPKTFKPFIC 122

Query: 143 MVSMIG-VNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAV 201
            + +IG     D  V +G        +    W  N+  +   + + + M   + RD  + 
Sbjct: 123 SLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDHLFETISQAMLNAVDRDAVSG 182

Query: 202 NKLQIAKITEEGTT 215
             + +  I ++  T
Sbjct: 183 MGVIVHIIEKDKIT 196

>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ... Length = 222

 Score = 99.3 bits (248), Expect = 9e-26
 Identities = 36/213 (16%), Positives = 81/213 (38%), Gaps = 23/213 (10%)

Query: 23  PYV-TGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQE 81
           PY   G +++ +  +D  ++A D       +I  +   ++   G + ++ A+G  +D   
Sbjct: 4   PYGDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDA 63

Query: 82  LLRNLD-ELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGV-KNGQK 139
           L++     +  Y +   +   L        +  ++Y +R  F P +   ++ G+ ++G+ 
Sbjct: 64  LVKRFKNSVKWY-HFDHNDKKLSINSAARNIQHLLYGKR--FFPYYVHTIIAGLDEDGKG 120

Query: 140 YLGMVSMIGVNFEDSHVATGFGNHLARPIL-----------------RDEWHENLSYEDG 182
            +     +G    +   A G    L  P L                   +  + LS E+ 
Sbjct: 121 AVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQYEPGTNGKVKKPLKYLSVEEV 180

Query: 183 VKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTT 215
           +KL+         R     + L+I  +T++G  
Sbjct: 181 IKLVRDSFTSATERHIQVGDGLEILIVTKDGVR 213

>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ... Length = 205

 Score = 98.1 bits (245), Expect = 2e-25
 Identities = 35/192 (18%), Positives = 78/192 (40%), Gaps = 8/192 (4%)

Query: 26  TGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRN 85
            G S++A+ +KDG+++ AD   + G+ I  +  +++  +        SG  +D Q +   
Sbjct: 8   LGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADI 67

Query: 86  LD-ELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGV-KNGQKYLGM 143
           +   L LY +    G     +   S    + Y  +   D L   +++ G     +  +  
Sbjct: 68  VQYHLELYTS--QYGTPS-TETAASVFKELCYENK---DNLTAGIIVAGYDDKNKGEVYT 121

Query: 144 VSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNK 203
           + + G   +  +   G G+          + EN+S E+ V  ++  +   +  D S+   
Sbjct: 122 IPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDGSSGGV 181

Query: 204 LQIAKITEEGTT 215
           +++  +T  G  
Sbjct: 182 IRMVVLTAAGVE 193

>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K Length = 204

 Score = 96.1 bits (240), Expect = 1e-24
 Identities = 36/200 (18%), Positives = 78/200 (39%), Gaps = 5/200 (2%)

Query: 28  TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLD 87
           T+ +A K++ G+++AAD   + G+ I  ++V+++  I  + L   +G  +D     R L 
Sbjct: 1   TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLA 60

Query: 88  -ELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSM 146
            +  +Y+    +   +        L  ++Y  + K   L    ++ G       L  V  
Sbjct: 61  RQCRIYEL--RNKERISVAAASKLLANMVY--QYKGMGLSMGTMICGWDKRGPGLYYVDS 116

Query: 147 IGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQI 206
            G     +  + G G+  A  ++   +  +L  E    L  + +    YRD  +   + +
Sbjct: 117 EGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAVNL 176

Query: 207 AKITEEGTTISQPYALKTFW 226
             + E+G        +    
Sbjct: 177 YHVREDGWIRVSSDNVADLH 196

>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N Length = 199

 Score = 94.6 bits (236), Expect = 3e-24
 Identities = 31/202 (15%), Positives = 77/202 (38%), Gaps = 8/202 (3%)

Query: 28  TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLD 87
           T+++A+++  G+++ +D   S G+ +  +  +++ P+ +      SG  +D Q +     
Sbjct: 1   TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAA 60

Query: 88  -ELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSM 146
            +L L+                + +  + Y  R   + L   L++ G    +      +M
Sbjct: 61  YQLELHGLEL--EEPPLVLAAANVVKNISYKYR---EDLLAHLIVAGWDQREGGQVYGTM 115

Query: 147 IGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQI 206
            G+         G G+      +   +   ++ E+  +     + + + RD S+   + +
Sbjct: 116 GGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRDGSSGGVIYL 175

Query: 207 AKITEEGTT--ISQPYALKTFW 226
             IT  G    +     L  F+
Sbjct: 176 VTITAAGVDHRVILGDELPKFY 197

>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* Length = 287

 Score = 96.7 bits (241), Expect = 3e-24
 Identities = 37/205 (18%), Positives = 86/205 (41%), Gaps = 6/205 (2%)

Query: 21  QLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQ 80
           ++    GT+ +A +++ GI++A D   + G+ +  ++V+++  I    L   +G  +D Q
Sbjct: 69  KIKIAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQ 128

Query: 81  ELLRNLD-ELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLW-NSLVLGGVKNGQ 138
                L  +  L++    +   +        L+ ++Y  + K   L   +++ G  +   
Sbjct: 129 FWETWLGSQCRLHEL--REKERISVAAASKILSNLVY--QYKGAGLSMGTMICGYTRKEG 184

Query: 139 KYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDR 198
             +  V   G   +      G G   A  +L   +  +LS ED + L ++ +    +RD 
Sbjct: 185 PTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDA 244

Query: 199 SAVNKLQIAKITEEGTTISQPYALK 223
            +   + +  +TE+G      + + 
Sbjct: 245 YSGGSVNLYHVTEDGWIYHGNHDVG 269

>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H Length = 217

 Score = 93.4 bits (233), Expect = 1e-23
 Identities = 42/189 (22%), Positives = 95/189 (50%), Gaps = 6/189 (3%)

Query: 26  TGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRN 85
           TGT+ V +  KD ++MA +   +  + I +K+ +++  I  ++ +  +G + D Q L+R 
Sbjct: 7   TGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRY 66

Query: 86  LD-ELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMV 144
           +  EL LY        ++  + + + L+ ++   + K+ P    L++GG+      +  +
Sbjct: 67  MKAELELYRLQR--RVNMPIEAVATLLSNMLN--QVKYMPYMVQLLVGGIDTAPH-VFSI 121

Query: 145 SMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKL 204
              G + ED + +TG G+     +L  ++ E ++ ++GV L+ + +     RD ++   +
Sbjct: 122 DAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSASGGMI 181

Query: 205 QIAKITEEG 213
            +A IT + 
Sbjct: 182 DVAVITRKD 190

>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ... Length = 212

 Score = 93.1 bits (232), Expect = 2e-23
 Identities = 37/198 (18%), Positives = 83/198 (41%), Gaps = 6/198 (3%)

Query: 28  TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLD 87
           T+ +A +++ GI++A D   + G+ +  ++V+R+  I    L   +G  +D Q     L 
Sbjct: 1   TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLG 60

Query: 88  -ELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLW-NSLVLGGVKNGQKYLGMVS 145
            +  L++    +   +        L+ ++Y  + K   L   +++ G  +     +  V 
Sbjct: 61  SQCRLHEL--REKERISVAAASKILSNLVY--QYKGAGLSMGTMICGYTRKEGPTIYYVD 116

Query: 146 MIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQ 205
             G   +      G G   A  +L   +  +LS ED + L ++ +    +RD  +   + 
Sbjct: 117 SDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVN 176

Query: 206 IAKITEEGTTISQPYALK 223
           +  +TE+G      + + 
Sbjct: 177 LYHVTEDGWIYHGNHDVG 194

>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H Length = 291

 Score = 93.8 bits (233), Expect = 4e-23
 Identities = 39/222 (17%), Positives = 77/222 (34%), Gaps = 19/222 (8%)

Query: 9   GLVGPNDPIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHS 68
             +    P+         GT++VALKY  G++MA D   + G+ I  + V ++     ++
Sbjct: 39  ASISGGAPLAGGDAQLPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYT 98

Query: 69  LLGASGEISDFQELLRNLD-ELILYDNMWDDGNSLGPKELHSYLTRVMY-NRRNKFDPLW 126
             G +G  +   E  R    EL  Y+ +   G  L      + L  ++  N       L 
Sbjct: 99  ATGIAGTAAVAVEFARLYAVELEHYEKLE--GVPLTFAGKINRLAIMVRGNLAAAMQGLL 156

Query: 127 NSLVLGGV--------KNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLS 178
              +L G           G+      +      E+ + A G G+  A+  ++  + +   
Sbjct: 157 ALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTD 216

Query: 179 YEDGVKLLEKCMRVLLYRD-------RSAVNKLQIAKITEEG 213
            + G+++  + +      D                  I  +G
Sbjct: 217 GDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDADG 258

>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii} Length = 264

 Score = 91.5 bits (228), Expect = 7e-23
 Identities = 6/202 (2%), Positives = 30/202 (14%), Gaps = 7/202 (3%)

Query: 28  TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLD 87
           + +  +                       + E ++       +     +    +      
Sbjct: 2   SHMQMVPPSAYDRAITVFSPEGRLYQVEYAREAVRRGTTAIGIACKDGVVLAVDRRITSK 61

Query: 88  -ELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGV-KNGQKYLGMVS 145
              I                  +         R   D       +  +    +  + M++
Sbjct: 62  LVKIRSIE--KIFQIDDHVAAATSGLVADA--RVLIDRARLEAQIYRLTYGEEISIEMLA 117

Query: 146 MIG-VNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKL 204
                  +      G        ++           +                      +
Sbjct: 118 KKICDIKQAYTQHGGVRPFGVSLLIAGIDKNEARLFETDPSGALIEYKATAIGSGRPVVM 177

Query: 205 QIAKITEEGTTISQPYALKTFW 226
           ++ +                  
Sbjct: 178 ELLEKEYRDDITLDEGLELAIT 199

>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ... Length = 222

 Score = 91.2 bits (227), Expect = 1e-22
 Identities = 30/202 (14%), Positives = 80/202 (39%), Gaps = 7/202 (3%)

Query: 28  TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLD 87
           T++V +K+ +G+++AAD   + G  +  K+  ++  I        +G  +D + + + + 
Sbjct: 1   TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIG 60

Query: 88  -ELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSM 146
             + L+                  L + ++  +     +   L++ GV     +L  +  
Sbjct: 61  SNIELHSLYT--SREPRVVSALQMLKQHLFKYQ---GHIGAYLIVAGVDPTGSHLFSIHA 115

Query: 147 IGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQI 206
            G      +++ G G+  A  +L   W ++L+ E+ +KL    ++  ++ D  + + + +
Sbjct: 116 HGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDV 175

Query: 207 AKITEEGTT-ISQPYALKTFWG 227
             +         + Y       
Sbjct: 176 CVMEIGKDAEYLRNYLTPNVRE 197

>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4 Length = 202

 Score = 90.7 bits (226), Expect = 1e-22
 Identities = 46/198 (23%), Positives = 92/198 (46%), Gaps = 6/198 (3%)

Query: 28  TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLD 87
           T+ V L  KDG++MA +   + G+ I  K+ ++I  I     +  +G + D Q L R + 
Sbjct: 1   TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIK 60

Query: 88  -ELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSM 146
            E  LY+           + + +  + ++     ++ P    L++GG+ +  K +  +  
Sbjct: 61  IEANLYEIRR--ERKPTVRAIATLTSNLLN--SYRYFPYLVQLLIGGIDSEGKSIYSIDP 116

Query: 147 IG-VNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQ 205
           IG    E   VATG G+  A  +L D +   +  ++ V+L  + +   + RD ++ + + 
Sbjct: 117 IGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDGID 176

Query: 206 IAKITEEGTTISQPYALK 223
           + KITE+      P  ++
Sbjct: 177 VVKITEDEFYQYSPEEVE 194

>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N Length = 205

 Score = 90.0 bits (224), Expect = 2e-22
 Identities = 39/205 (19%), Positives = 81/205 (39%), Gaps = 13/205 (6%)

Query: 28  TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLD 87
           T+++A+++  G+++ AD   + GS I  +  +++ PI        SG  +D Q +   + 
Sbjct: 1   TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVT 60

Query: 88  -ELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGV---KNGQKYLGM 143
            +L  +                S    + Y  R   + L   +++ G    + GQ Y   
Sbjct: 61  YQLGFHSIEL--NEPPLVHTAASLFKEMCYRYR---EDLMAGIIIAGWDPQEGGQVY--S 113

Query: 144 VSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNK 203
           V M G+    S    G G+      +   + E ++ E+ ++     + + + RD S+   
Sbjct: 114 VPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSGGV 173

Query: 204 LQIAKITEEGTTIS--QPYALKTFW 226
           +++A I E G          +  F 
Sbjct: 174 IRLAAIAESGVERQVLLGDQIPKFA 198

>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H Length = 294

 Score = 88.5 bits (219), Expect = 5e-21
 Identities = 43/207 (20%), Positives = 75/207 (36%), Gaps = 19/207 (9%)

Query: 26  TGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRN 85
            GT++VAL YK G+L+A D   + G+ I  + VE +    ++S  G +G      EL+R 
Sbjct: 64  HGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEYSAAGIAGTAGIAIELVRL 123

Query: 86  LD-ELILYDNMWDDGNSLGPKELHSYLTRVMY-NRRNKFDPLWNSLVLGGV--------K 135
              EL  Y+ +   G  L      + L  ++  N       L    +L G         +
Sbjct: 124 FAVELEHYEKIE--GVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESR 181

Query: 136 NGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLY 195
            G+     V          + A G G+  A+  L+  +  +   E  ++   + +     
Sbjct: 182 AGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESLYDAAD 241

Query: 196 RD-------RSAVNKLQIAKITEEGTT 215
            D        +         IT+ G  
Sbjct: 242 DDSATGGPDLTRGIYPTAVTITQAGAV 268

>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H Length = 234

 Score = 85.0 bits (211), Expect = 3e-20
 Identities = 41/194 (21%), Positives = 76/194 (39%), Gaps = 6/194 (3%)

Query: 28  TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNL- 86
           T++  L ++DG+++ AD   +  S +  KS E+I  I        +G  +D +   R   
Sbjct: 1   TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAA 60

Query: 87  DELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSM 146
            ++ L+      G       +   L + ++  +     +  SLV+GGV      L  V  
Sbjct: 61  SKMELHALST--GREPRVATVTRILRQTLFRYQ---GHVGASLVVGGVDLNGPQLYEVHP 115

Query: 147 IGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQI 206
            G        A G G   A  +L D +  N++ E   +LL + +   +  D  +   +  
Sbjct: 116 HGSYSRLPFTALGSGQGAAVALLEDRFQPNMTLEAAQELLVEAITAGILSDLGSGGNVDA 175

Query: 207 AKITEEGTTISQPY 220
             IT  G  + +  
Sbjct: 176 CVITAGGAKLQRAL 189

>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 Length = 235

 Score = 81.0 bits (200), Expect = 9e-19
 Identities = 42/205 (20%), Positives = 75/205 (36%), Gaps = 19/205 (9%)

Query: 28  TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLD 87
           T++VAL YK G+L+A D   + G+ I  + VE++    ++S  G +G      EL+R   
Sbjct: 1   TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFA 60

Query: 88  -ELILYDNMWDDGNSLGPKELHSYLTRVMY-NRRNKFDPLWNSLVLGGV--------KNG 137
            EL  Y+ +   G  L      + L  ++  N       L    +L G         + G
Sbjct: 61  VELEHYEKIE--GVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAG 118

Query: 138 QKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRD 197
           +     V          + A G G+  A+  L+  +  +   E  ++   + +      D
Sbjct: 119 RIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESLYDAADDD 178

Query: 198 -------RSAVNKLQIAKITEEGTT 215
                   +         IT+ G  
Sbjct: 179 SATGGPDLTRGIYPTAVTITQAGAV 203

>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A Length = 259

 Score = 65.8 bits (160), Expect = 5e-13
 Identities = 30/199 (15%), Positives = 65/199 (32%), Gaps = 18/199 (9%)

Query: 26  TGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRN 85
            G SVV L ++DG+L  A+            ++ ++  +       A G+ ++F+ L R 
Sbjct: 26  RGRSVVVLTFRDGVLFVAEN--------PSTALHKVSELYDRLGFAAVGKYNEFENLRRA 77

Query: 86  LDELILYDNMWDDGNSLGPKELHSYLTRVMYNR-RNKFDPLWNSLVLGGVKNGQKYLG-- 142
                       D   +  + L +   + +      +  P    + +  V          
Sbjct: 78  GIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTEQPKPYEVEICVAEVGRVGSPKAPQ 137

Query: 143 --MVSMIG-VNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKL----LEKCMRVLLY 195
              ++  G +  E   V  G         +R+ +  +L  E  V +    L +       
Sbjct: 138 LYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYRADLDLEAAVGIAVNALRQGGAGEGE 197

Query: 196 RDRSAVNKLQIAKITEEGT 214
           +    V  L++A + +   
Sbjct: 198 KRNVDVASLEVAVLDQSRP 216

>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D Length = 248

 Score = 64.6 bits (157), Expect = 1e-12
 Identities = 31/165 (18%), Positives = 62/165 (37%), Gaps = 14/165 (8%)

Query: 27  GTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNL 86
             SVVAL Y  G+L  A+           +S+++I  +       A+G+ ++F  L R  
Sbjct: 27  AKSVVALAYAGGVLFVAEN--------PSRSLQKISELYDRVGFAAAGKFNEFDNLRRGG 78

Query: 87  DELILYDNMWDDGNSLGPKELHSYLTRVMYN-RRNKFDPLWNSLVLGGV----KNGQKYL 141
            +         D   +  ++L +   + +      +  P    L +  V    +  +  L
Sbjct: 79  IQFADTRGYAYDRRDVTGRQLANVYAQTLGTIFTEQAKPYEVELCVAEVAHYGETKRPEL 138

Query: 142 GMVSMIG-VNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKL 185
             ++  G +  E   V  G         L++ + EN S  D +++
Sbjct: 139 YRITYDGSIADEPHFVVMGGTTEPIANALKESYAENASLTDALRI 183

>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A Length = 180

 Score = 48.1 bits (114), Expect = 3e-07
 Identities = 29/170 (17%), Positives = 56/170 (32%), Gaps = 16/170 (9%)

Query: 27  GTSVVALKYKDGILMAADMGGSYGSTIRYKSVER-IKPIGKHSLL-GASGEISDFQELLR 84
            T++ A+++K    M+ D   ++G  +  K   R ++ +    +L G +G ++D   L  
Sbjct: 5   ATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFE 64

Query: 85  NLD-ELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGM 143
             + +L  Y+           KE  S               L     +  V N    L +
Sbjct: 65  KFEAKLEEYNGNLKRAAVELAKEWRS------------DKVLRKLEAMLIVMNQDTLLLV 112

Query: 144 VSMIGVN-FEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRV 192
                V   +D  +A G G + A    R             ++    +  
Sbjct: 113 SGTGEVIEPDDGILAIGSGGNYALAAGRALKKHAGESMSASEIARAALET 162

>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4 Length = 171

 Score = 45.4 bits (107), Expect = 3e-06
 Identities = 26/160 (16%), Positives = 56/160 (35%), Gaps = 14/160 (8%)

Query: 28  TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKH-SLLGASGEISDFQELLRNL 86
           T+++ ++     +M  D   ++GST+   +  +++ +G+   L G +G ++D   L    
Sbjct: 1   TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFD-- 58

Query: 87  DELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSM 146
                ++    +      K           +R      L     L  V + +    +   
Sbjct: 59  ----RFEAKLREWGGNLTKAAVELAKDWRTDR-----VLRRLEALLLVADKENIFIISGN 109

Query: 147 IGVNFEDSHV-ATGFGNHLARPILRD-EWHENLSYEDGVK 184
             V   D    A G G   A    +    + +LS  + V+
Sbjct: 110 GEVIQPDDDAAAIGSGGPYALAAAKALLRNTDLSAREIVE 149

>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A Length = 233

 Score = 45.6 bits (109), Expect = 3e-06
 Identities = 39/197 (19%), Positives = 73/197 (37%), Gaps = 15/197 (7%)

Query: 27  GTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNL 86
           G   V +K  +G+++A +           +SV +++PI KH  L  SG   D++ L+   
Sbjct: 31  GAPSVGIKAANGVVLATEKK-QKSILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRA 89

Query: 87  -DELILYDNMWDDGNSLGPKELHSYLTRVM------YNRRNKFDPLWNSLVLGGVKNGQK 139
                 Y  ++ +   +   +L   +  VM         R    P   SL++ G   G+ 
Sbjct: 90  RKLAQQYYLVYQE--PIPTAQLVQRVASVMQEYTQSGGVR----PFGVSLLICGWNEGRP 143

Query: 140 YLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRS 199
           YL      G  F     A G      +  L   ++E+L  ED +      ++       +
Sbjct: 144 YLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQMT 203

Query: 200 AVNKLQIAKITEEGTTI 216
             + +++    E G   
Sbjct: 204 E-DNIEVGICNEAGFRR 219

>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A Length = 174

 Score = 44.2 bits (104), Expect = 6e-06
 Identities = 23/160 (14%), Positives = 57/160 (35%), Gaps = 13/160 (8%)

Query: 28  TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLL-GASGEISDFQELLRNL 86
           T++V+++    +++  D   S G+T+   +  +++ +    +L G +G  +D   L    
Sbjct: 1   TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELF 60

Query: 87  D-ELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVS 145
           + +L ++            K+  +        +      + +      +      +    
Sbjct: 61  ERKLEMHQGHLLKSAVELAKDWRTDR---ALRKLEAMLIVADEKESLIITGIGDVVQPE- 116

Query: 146 MIGVNFEDSHVATGFGNHLARPILRD-EWHENLSYEDGVK 184
                 ED  +A G G + A    R    +  LS  + V+
Sbjct: 117 ------EDQILAIGSGGNYALSAARALVENTELSAHEIVE 150

>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A* Length = 246

 Score = 44.6 bits (106), Expect = 7e-06
 Identities = 37/199 (18%), Positives = 74/199 (37%), Gaps = 18/199 (9%)

Query: 23  PYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQEL 82
               G + + +K K+G+++ AD        +   ++E+I  I +H     SG ++D + L
Sbjct: 30  AVKRGATAIGIKCKEGVILIADKR-VGSKLLEKDTIEKIYKIDEHICAATSGLVADARVL 88

Query: 83  LRNL-DELILYDNMWDDGNSLGPKELHSYLTRVM------YNRRNKFDPLWNSLVLGGVK 135
           +     E  +    +D    +  KEL   +             R    P   SL++ GV 
Sbjct: 89  IDRARIEAQINRLTYDI--PITVKELAKKICDFKQQYTQYGGVR----PFGVSLLIAGVN 142

Query: 136 NG-QKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLL 194
              + Y       G   E    A G G          E+ ++LS++D + L    M + +
Sbjct: 143 EVPKLY--ETDPSGALLEYKATAIGMGRMAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSI 200

Query: 195 YRDRSAVNKLQIAKITEEG 213
             +      +++  +  + 
Sbjct: 201 ESELVP-ENIEVGYVKVDD 218

>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A Length = 233

 Score = 42.6 bits (101), Expect = 3e-05
 Identities = 40/198 (20%), Positives = 69/198 (34%), Gaps = 15/198 (7%)

Query: 23  PYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQEL 82
               G++ + +K+ +G+L+ +D        I   S+E+I+ I  +     SG ++D + L
Sbjct: 30  AVKKGSTALGMKFANGVLLISDKK-VRSRLIEQNSIEKIQLIDDYVAAVTSGLVADARVL 88

Query: 83  LRNL-DELILYDNMWDDGNSLGPKELHSYLTRVM------YNRRNKFDPLWNSLVLGGVK 135
           +             +     +  + L   +   M         R    P   SL+  G+ 
Sbjct: 89  VDFARISAQQEKVTYGS--LVNIENLVKRVADQMQQYTQYGGVR----PYGVSLIFAGID 142

Query: 136 NGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLY 195
                L      G   E    A G G       L  E+ ENL  ++ V L  K ++  L 
Sbjct: 143 QIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKALKSSLE 202

Query: 196 RDRSAVNKLQIAKITEEG 213
                    +IA IT   
Sbjct: 203 EGEEL-KAPEIASITVGN 219

>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F Length = 254

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 31/201 (15%), Positives = 75/201 (37%), Gaps = 29/201 (14%)

Query: 27  GTSVVALKYKDGILMAAD-------MGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDF 79
            ++ + ++ KDG++   +                   S +R+  + +H  +  +G ++D 
Sbjct: 33  SSTAIGIRCKDGVVFGVEKLVLSKLYEEG--------SNKRLFNVDRHVGMAVAGLLADA 84

Query: 80  QELLRNL-DELILYDNMWDDGNSLGPKELHSYLTRVM------YNRRNKFDPLWNSLVLG 132
           + L     +E   + + +    ++  K L   +   +         R    P   S +LG
Sbjct: 85  RSLADIAREEASNFRSNFGY--NIPLKHLADRVAMYVHAYTLYSAVR----PFGCSFMLG 138

Query: 133 GV-KNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMR 191
               N    L M+   GV++     A G     A+  +     + ++  D VK + K + 
Sbjct: 139 SYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRDIVKEVAKIIY 198

Query: 192 VLLYRDRSAVNKLQIAKITEE 212
           ++    +    +L+++ + E 
Sbjct: 199 IVHDEVKDKAFELELSWVGEL 219

>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ... Length = 244

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 29/202 (14%), Positives = 73/202 (36%), Gaps = 14/202 (6%)

Query: 27  GTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNL 86
             + + +   DGI++AA+   +     +  S E++  +     +  +G  +D + L+   
Sbjct: 31  AGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINTA 90

Query: 87  -DELILYDNMWDDGNSLGPKELHSYLTRVM------YNRRNKFDPLWNSLVLGGVKNGQK 139
                 Y   +++   +  + L   L+ +          R    P   S +  G  +   
Sbjct: 91  RIHAQNYLKTYNE--DIPVEILVRRLSDIKQGYTQHGGLR----PFGVSFIYAGYDDRYG 144

Query: 140 Y-LGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDR 198
           Y L   +  G       ++ G     A+ +L+ ++ +++  +D ++L  K +        
Sbjct: 145 YQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKDDMKVDDAIELALKTLSKTTDSSA 204

Query: 199 SAVNKLQIAKITEEGTTISQPY 220
              ++L+ A I +         
Sbjct: 205 LTYDRLEFATIRKGANDGEVYQ 226

>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ... Length = 244

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 40/199 (20%), Positives = 76/199 (38%), Gaps = 17/199 (8%)

Query: 27  GTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNL 86
           GT+ + +K  DG++ A +        +  +   +I+ + +H     SG I D + L+   
Sbjct: 30  GTTSIGIKCNDGVVFAVEKL-ITSKLLVPQKNVKIQVVDRHIGCVYSGLIPDGRHLVNRG 88

Query: 87  -DELILYDNMWDDGNSLGPKELHSYLTRVM------YNRRNKFDPLWNSLVLGGVKNGQK 139
            +E   +  ++     +        L + +       + R    P   S + GGV     
Sbjct: 89  REEAASFKKLYKT--PIPIPAFADRLGQYVQAHTLYNSVR----PFGVSTIFGGVDKNGA 142

Query: 140 YLGMVSMIGVNFEDSHVATGFGNHLARPIL---RDEWHENLSYEDGVKLLEKCMRVLLYR 196
           +L M+   G  +     ATG G   A+  L    D   E LS  + VK   K + +    
Sbjct: 143 HLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHED 202

Query: 197 DRSAVNKLQIAKITEEGTT 215
           ++    +L+I+  +   T 
Sbjct: 203 NKEKDFELEISWCSLSETN 221

>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ... Length = 242

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 33/196 (16%), Positives = 84/196 (42%), Gaps = 14/196 (7%)

Query: 27  GTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNL 86
           G++ + +  K+G+++  +   +    +   S+E+I  I +H     SG  +D + ++ + 
Sbjct: 26  GSTAIGIATKEGVVLGVEKR-ATSPLLESDSIEKIVEIDRHIGCAMSGLTADARSMIEHA 84

Query: 87  -DELILYDNMWDDGNSLGPKELHSYLTRVM--YNRRNKFDPLWN------SLVLGGVKNG 137
               + ++  +D+   +  + L   +  +   +      +          +L++ G    
Sbjct: 85  RTAAVTHNLYYDE--DINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDAD 142

Query: 138 QKY-LGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYR 196
             Y L      G  +  +  A G G+  A+  L +EWH +L+ ++   L+ K ++ ++  
Sbjct: 143 DGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWHSSLTLKEAELLVLKILKQVMEE 202

Query: 197 DRSAVNKLQIAKITEE 212
                N  Q++ IT++
Sbjct: 203 KLDE-NNAQLSCITKQ 217

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 2e-04
 Identities = 32/206 (15%), Positives = 58/206 (28%), Gaps = 87/206 (42%)

Query: 75  EISDFQELLRNLDE--------LILYDNMWDDGNSLGPKELHSYLT--RVMYNRRNK--F 122
            I   Q  LR L +        L+L  N+ +       K  +++    +++   R K   
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLVL-LNVQN------AKAWNAFNLSCKILLTTRFKQVT 278

Query: 123 DPLWNS----LVLGGVKNG----------QKYLGM----------------VSMIGVNFE 152
           D L  +    + L                 KYL                  +S+I  +  
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR 338

Query: 153 DSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVL-------LYRDRSAVNKLQ 205
           D          LA     D W ++++ +    ++E  + VL       ++        L 
Sbjct: 339 D---------GLATW---DNW-KHVNCDKLTTIIESSLNVLEPAEYRKMFDR------LS 379

Query: 206 I----AKITEEGTTISQPYALKTFWG 227
           +    A I            L   W 
Sbjct: 380 VFPPSAHIPTI--------LLSLIWF 397

>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D Length = 241

 Score = 39.5 bits (93), Expect = 4e-04
 Identities = 32/202 (15%), Positives = 83/202 (41%), Gaps = 26/202 (12%)

Query: 27  GTSVVALKYKDGILMAAD-------MGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDF 79
           G++ + ++  +G+ +A +       M  S        S+E+I  I  H     SG I+D 
Sbjct: 34  GSTAIGIQTSEGVCLAVEKRITSPLMEPS--------SIEKIVEIDAHIGCAMSGLIADA 85

Query: 80  QELLRNL-DELILYDNMWDDGNSLGPKELHSYLTRVM-----YNRRNKFD--PLWNSLVL 131
           + L+     E   +   +++  ++  + +   ++ +       +        P   +L+ 
Sbjct: 86  KTLIDKARVETQNHWFTYNE--TMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLF 143

Query: 132 GGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMR 191
           GGV      L  +   G   +    A G  +  A+  L++ +H++++ ++ +K     ++
Sbjct: 144 GGVDEKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQELYHKSMTLKEAIKSSLIILK 203

Query: 192 VLLYRDRSAVNKLQIAKITEEG 213
            ++    +A N +++A +    
Sbjct: 204 QVMEEKLNATN-IELATVQPGQ 224

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	242
1iru_N	219	20S proteasome; cell cycle, immune response, prote	100.0
1g0u_M	266	Proteasome component PRE4; ubiquitin, degradation,	100.0
1ryp_N	233	20S proteasome; multicatalytic proteinase, protein	100.0
1ryp_A	243	20S proteasome; multicatalytic proteinase, protein	100.0
1iru_B	233	20S proteasome; cell cycle, immune response, prote	100.0
1yar_A	233	Proteasome alpha subunit; proteasome 20S, PA26 pro	100.0
1ryp_C	244	20S proteasome; multicatalytic proteinase, protein	100.0
1iru_A	246	20S proteasome; cell cycle, immune response, prote	100.0
1iru_C	261	20S proteasome; cell cycle, immune response, prote	100.0
1yar_H	217	Proteasome beta subunit; proteasome 20S, PA26 prot	100.0
1ryp_F	233	20S proteasome; multicatalytic proteinase, protein	100.0
3h4p_A	264	Proteasome subunit alpha; core particle, cytoplasm	100.0
1iru_E	241	20S proteasome; cell cycle, immune response, prote	100.0
1ryp_E	242	20S proteasome; multicatalytic proteinase, protein	100.0
1j2q_H	202	Proteasome beta subunit; ubiquitin, CP, hydrolase;	100.0
3unf_H	234	Proteasome subunit beta type-10; antigen presentat	100.0
1iru_D	248	20S proteasome; cell cycle, immune response, prote	100.0
1ryp_D	241	20S proteasome; multicatalytic proteinase, protein	100.0
1iru_F	263	20S proteasome; cell cycle, immune response, prote	100.0
1iru_G	254	20S proteasome; cell cycle, immune response, prote	100.0
1j2p_A	246	Alpha-ring, proteasome alpha subunit; hydrolase; 2	100.0
3h4p_a	219	Proteasome subunit beta; core particle, cytoplasm,	100.0
1ryp_G	244	20S proteasome; multicatalytic proteinase, protein	100.0
3nzj_K	287	Proteasome component PRE2; ubiquitin, protein degr	100.0
3nzj_H	261	Proteasome component PUP1; ubiquitin, protein degr	100.0
1ryp_L	212	20S proteasome; multicatalytic proteinase, protein	100.0
3nzj_F	288	Proteasome component C1; ubiquitin, protein degrad	100.0
1iru_L	204	20S proteasome; cell cycle, immune response, prote	100.0
1ryp_I	222	20S proteasome; multicatalytic proteinase, protein	100.0
1ryp_B	250	20S proteasome; multicatalytic proteinase, protein	100.0
1ryp_K	198	20S proteasome; multicatalytic proteinase, protein	100.0
1iru_M	213	20S proteasome; cell cycle, immune response, prote	100.0
1iru_H	205	20S proteasome; cell cycle, immune response, prote	100.0
1iru_I	234	20S proteasome; cell cycle, immune response, prote	100.0
1ryp_H	205	20S proteasome; multicatalytic proteinase, protein	100.0
1ryp_M	222	20S proteasome; multicatalytic proteinase, protein	100.0
3mi0_A	248	Proteasome subunit alpha; enzyme inhibitors, lacto	100.0
1iru_K	201	20S proteasome; cell cycle, immune response, prote	100.0
3unf_N	199	Proteasome subunit beta type-9; antigen presentati	100.0
1q5r_H	294	Proteasome beta-type subunit 1; proteasome assembl	100.0
1iru_J	205	20S proteasome; cell cycle, immune response, prote	100.0
1ryp_J	204	20S proteasome; multicatalytic proteinase, protein	100.0
1q5q_H	235	Proteasome beta-type subunit 1; proteasome assembl	100.0
1q5q_A	259	Proteasome alpha-type subunit 1; proteasome assemb	100.0
2jay_A	291	Proteasome; hydrolase; 1.99A {Mycobacterium tuberc	100.0
2z3b_A	180	ATP-dependent protease HSLV; N-terminal nucleophIl	100.0
1m4y_A	171	ATP-dependent protease HSLV; N-terminal catalytic	100.0
1g3k_A	174	ATP-dependent protease HSLV; hydrolase; 1.90A {Hae	100.0

>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M

Probab=100.00  E-value=4.2e-52  Score=351.22  Aligned_cols=215  Identities=44%  Similarity=0.816  Sum_probs=206.7

Q ss_pred             CccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhh-hc
Q 026175           20 TQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMW-DD   98 (242)
Q Consensus        20 ~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~-~~   98 (242)
                      +.+|+.+|+|+|||+++||||||+|+|.+.|.++.+++.+|||+|++|++++++|..+|++.|.+++|. .++.|++ ++
T Consensus         1 ~~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~-~~~~~~~~~~   79 (219)
T 1iru_N            1 TQNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQ-MVIDEELLGD   79 (219)
T ss_dssp             CCSCCSEECCCEEEEETTEEEEEEECCEEETTEEEECSCCCEEEETTTEEEEEEEEHHHHHHHHHHHHH-HHHHHHHHCS
T ss_pred             CCCCccCCceEEEEEeCCEEEEEECCccccCcEEecCCCCceEEeCCCEEEEeccCHHHHHHHHHHHHH-HHHHHHHHHc
Confidence            357899999999999999999999999998999999999999999999999999999999999999998 4888887 89


Q ss_pred             CCCCCHHHHHHHHHHHHHhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhhcCC--C
Q 026175           99 GNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHE--N  176 (242)
Q Consensus        99 g~~i~~~~la~~l~~~~~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~--~  176 (242)
                      +.+++++.+|+++++.+|++|+++|||+|++||+|+|+++|+||++||+|++.+++++|+|+|+++++++||+.|++  +
T Consensus        80 ~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~  159 (219)
T 1iru_N           80 GHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPV  159 (219)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEEETTEEEEEEECSSCCEEECSEEECTTHHHHTHHHHHHHHTSCSC
T ss_pred             CCCCCHHHHHHHHHHHHHHhcccCCCceEEEEEEEEECCCCEEEEECCCCCeEECCeEEECccHHHHHHHHHhhcCCCCC
Confidence            99999999999999999999888899999999999998899999999999999999999999999999999999999  9


Q ss_pred             CCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCeEEeCCcccccccccccccCCc
Q 026175          177 LSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALKTFWGFTAFQNPT  235 (242)
Q Consensus       177 ~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g~~~~~~~ei~~~~~~~~~~~~~  235 (242)
                      ||++||++++++||..+.++|..++++++|++|+++|++.+++++|+.+|.+++|+++-
T Consensus       160 mt~eea~~l~~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~~~~i~~~~~~~~~~~~~  218 (219)
T 1iru_N          160 LSQTEARDLVERCMRVLYYRDARSYNRFQTATVTEKGVEIEGPLSTETNWDIAHMISGF  218 (219)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEEECCCCCCGGGGCSCC-
T ss_pred             CCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEcCCCEEEcCCeeccchhhHHHhhcCC
Confidence            99999999999999999999999999999999999999999999999999999999863

>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*

Probab=100.00  E-value=4.1e-51  Score=354.82  Aligned_cols=221  Identities=37%  Similarity=0.741  Sum_probs=208.5

Q ss_pred             CCCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHh
Q 026175           15 DPIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDN   94 (242)
Q Consensus        15 ~~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~   94 (242)
                      +|++++++|+.+|+|+|||+++||||||+|+|.+.+.++.+++.+||++|++|++++++|..+|++.|++++|. .++.|
T Consensus        29 ~~~~~~~~av~~GtT~vgi~~~dgVVlAaD~r~t~g~~i~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~-~~~~~  107 (266)
T 1g0u_M           29 SPMVNTQQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKD-LVTEN  107 (266)
T ss_dssp             -----CCCCCEEECCEEEEEETTEEEEEEECCEEETTEEEECCCCCEEECTTSEEEEEEEEHHHHHHHHHHHHH-HHHHH
T ss_pred             cchhhhccCcccCceEEEEEECCEEEEEEcCCcccCceeecCCcCcEEEcCCCEEEEeccCHHHHHHHHHHHHH-HHHHh
Confidence            68999999999999999999999999999999998999999999999999999999999999999999999998 48888


Q ss_pred             hh-----hcCCCCCHHHHHHHHHHHHHhhcCCCCCcceEEEEEEEEC-CcEEEEEECCCCceeeeCeEEEccchHhhHHH
Q 026175           95 MW-----DDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKN-GQKYLGMVSMIGVNFEDSHVATGFGNHLARPI  168 (242)
Q Consensus        95 ~~-----~~g~~i~~~~la~~l~~~~~~~r~~~rP~~vs~lvaG~D~-~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~  168 (242)
                      ++     +++++++++.+++++++.+|++|+++|||+|++||+|+|+ ++|+||++||+|++.+++++|+|+|+.+++++
T Consensus       108 ~~~~~~~~~~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~  187 (266)
T 1g0u_M          108 AYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPL  187 (266)
T ss_dssp             HTTCTTTTTTTSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHTHHHH
T ss_pred             hhccchhhcCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcCCCCEEEEEECCCCCEEeCCEEEEccCHHHHHHH
Confidence            87     8999999999999999999999887899999999999996 49999999999999999999999999999999


Q ss_pred             HhhhcCC-----CCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCC-CeEEeCCcccccc-cccccccCCcc
Q 026175          169 LRDEWHE-----NLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEE-GTTISQPYALKTF-WGFTAFQNPTA  236 (242)
Q Consensus       169 Le~~~~~-----~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~-g~~~~~~~ei~~~-~~~~~~~~~~~  236 (242)
                      ||+.|++     +||++||++++++||+.+.+||..++++++|++|+++ |++.++++||+.+ |++++|+++..
T Consensus       188 Le~~~~~~~~~~~ms~eeA~~la~~al~~a~~rd~~sg~~i~v~vI~k~~g~~~~~~~ei~~~~w~~~~~~~~~~  262 (266)
T 1g0u_M          188 LRKVVDRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTFKKNLQVENMKWDFAKDIKGYG  262 (266)
T ss_dssp             HTTTCSSGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTEEEEEEEEECCCCCCGGGGGCCSSS
T ss_pred             HHHhhcccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEECCCCeEEcCHHHhhhhhhhHHhhhcCcC
Confidence            9999999     9999999999999999999999999999999999999 9999999999998 99999998864

>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...

Probab=100.00  E-value=9.7e-51  Score=346.06  Aligned_cols=215  Identities=38%  Similarity=0.746  Sum_probs=206.5

Q ss_pred             CccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhh---
Q 026175           20 TQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMW---   96 (242)
Q Consensus        20 ~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~---   96 (242)
                      +.+|+.+|+|+|||+++||||||+|+|.+.|.++.+++.+|||+|++|++++++|..+|++.|.+++|. .++.|++   
T Consensus         1 ~~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~-~~~~~~~~~~   79 (233)
T 1ryp_N            1 TQQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKD-LVTENAYDNP   79 (233)
T ss_dssp             CCCCCEEECCEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEETTTEEEEEEEEHHHHHHHHHHHHH-HHHHHHTTCT
T ss_pred             CcccccCCceEEEEEECCEEEEEEcCccccCCeeecCCcCceEEeCCCEEEEccccHHHHHHHHHHHHH-HHHHHhhccc
Confidence            357899999999999999999999999998999999999999999999999999999999999999998 4888988   


Q ss_pred             --hcCCCCCHHHHHHHHHHHHHhhcCCCCCcceEEEEEEEEC-CcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhhc
Q 026175           97 --DDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKN-GQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEW  173 (242)
Q Consensus        97 --~~g~~i~~~~la~~l~~~~~~~r~~~rP~~vs~lvaG~D~-~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~  173 (242)
                        +++++++++.+|+++++.+|++|+++|||+|++||+|+|+ ++|+||++||+|++.+++++|+|+|+++++++||+.|
T Consensus        80 ~~~~~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~  159 (233)
T 1ryp_N           80 LADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVV  159 (233)
T ss_dssp             TTTTTTSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHHHHHHHTTTC
T ss_pred             hhhcCCCCCHHHHHHHHHHHHHHhcCCCCCceEEEEEEEEcCCCCEEEEEECCCcCeEEcCEEEECcCHHHHHHHHHHhh
Confidence              8999999999999999999999887899999999999996 4999999999999999999999999999999999999


Q ss_pred             CC-----CCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCC-CeEEeCCcccccc-cccccccCCc
Q 026175          174 HE-----NLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEE-GTTISQPYALKTF-WGFTAFQNPT  235 (242)
Q Consensus       174 ~~-----~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~-g~~~~~~~ei~~~-~~~~~~~~~~  235 (242)
                      ++     +||++||++++++||+.+.+||..++++++|++|+++ |++.++++||+.+ |.+++|+++.
T Consensus       160 ~~~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~g~~~~~~~~i~~~~w~~~~~~~~~  228 (233)
T 1ryp_N          160 DRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTFKKNLQVENMKWDFAKDIKGY  228 (233)
T ss_dssp             SSGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTEEEEEEEEECCSCCCGGGGGCCSS
T ss_pred             ccccccCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEECCCCeEEcChHhcccccchhhhhccCc
Confidence            99     9999999999999999999999999999999999999 9999999999998 9999999875

>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...

Probab=100.00  E-value=5.6e-51  Score=349.58  Aligned_cols=220  Identities=14%  Similarity=0.092  Sum_probs=208.7

Q ss_pred             hhccCCCCCCC---CCccCcccccc-CceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHH
Q 026175            5 QAKQGLVGPND---PIQRTQLPYVT-GTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQ   80 (242)
Q Consensus         5 ~~~~~~~~~~~---~~~~~~~a~~~-g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~   80 (242)
                      |-...+|.|+|   +|||+++|+++ |+|+|||+++||||||+|+|.+ ++++.+++.+|||+|++|++++++|+.+|++
T Consensus         4 d~~~t~fsp~Grl~QvEYA~~av~~~Gtt~vgi~~~dgVvlaad~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~   82 (243)
T 1ryp_A            4 DRHITIFSPEGRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVP-DKLLDPTTVSYIFCISRTIGMVVNGPIPDAR   82 (243)
T ss_dssp             GGTSSSCCTTSCCHHHHHHHHHTTTTCCCEEEEECSSEEEEEEECCCC-CTTBCGGGCCSEEECSSSCEEEEESCHHHHH
T ss_pred             CCCCceECCCCeeHHHHHHHHHHhcCCCcEEEEEeCCEEEEEEEecCC-ccccCCCcCCceEEECCCEEEEEEecHHHHH
Confidence            34567899986   68999999999 9999999999999999999999 8999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH--HhhcCCCCCcceEEEEEEEEC-CcEEEEEECCCCceeeeCeEE
Q 026175           81 ELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVM--YNRRNKFDPLWNSLVLGGVKN-GQKYLGMVSMIGVNFEDSHVA  157 (242)
Q Consensus        81 ~l~~~lr~~~~~~~~~~~g~~i~~~~la~~l~~~~--~~~r~~~rP~~vs~lvaG~D~-~~p~Ly~idp~G~~~~~~~~a  157 (242)
                      .+.+++|. .++.|+++++++++++.+|+++++.+  |++|+++|||+|++||||+|+ ++|+||++||+|++.+++++|
T Consensus        83 ~l~~~~r~-~~~~~~~~~~~~~~v~~la~~l~~~l~~y~~~~~~rP~~v~~lvaG~D~~~gp~Ly~~dp~G~~~~~~~~a  161 (243)
T 1ryp_A           83 NAALRAKA-EAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKATA  161 (243)
T ss_dssp             HHHHHHHH-HHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTSCCCSCEEEEEEEETTTEEEEEEECTTSCEEEBSEEE
T ss_pred             HHHHHHHH-HHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccccceEEEEEEEcCCCCcEEEEEcCCCCEEEEEEEE
Confidence            99999998 58899999999999999999999999  999988999999999999995 899999999999999999999


Q ss_pred             EccchHhhHHHHhhhcCC-------CCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCeEEeCCcccccccc
Q 026175          158 TGFGNHLARPILRDEWHE-------NLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALKTFWG  227 (242)
Q Consensus       158 iG~g~~~a~~~Le~~~~~-------~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g~~~~~~~ei~~~~~  227 (242)
                      +|+|++.++++||+.|++       +||++||++++++||..+.++| .++++++|++|+++|+++++++||+..++
T Consensus       162 ~G~gs~~a~~~Le~~~~~~~~~~~~~ms~eea~~l~~~al~~~~~rd-~s~~~iev~vi~~~g~~~l~~~ei~~~~~  237 (243)
T 1ryp_A          162 TGPKQQEITTNLENHFKKSKIDHINEESWEKVVEFAITHMIDALGTE-FSKNDLEVGVATKDKFFTLSAENIEERLV  237 (243)
T ss_dssp             ESTTHHHHHHHHHHHHHHHCSSSCCCSSHHHHHHHHHHHHHHHHTCC-CCTTSEEEEEEETTEEEECCHHHHHHHHH
T ss_pred             ECCCcHHHHHHHHHHhhhcccccccCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEEECCCeEECCHHHHHHHHH
Confidence            999999999999999998       9999999999999999999999 78999999999999999999999988654

>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A

Probab=100.00  E-value=1.5e-50  Score=344.88  Aligned_cols=219  Identities=19%  Similarity=0.270  Sum_probs=206.7

Q ss_pred             hccCCCCCCC---CCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHH
Q 026175            6 AKQGLVGPND---PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQEL   82 (242)
Q Consensus         6 ~~~~~~~~~~---~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l   82 (242)
                      -...+|.|+|   ++||+++|+++|+|+|||+++||||||+|+|.+ +.++.+++.+||++|++|++++++|..+|++.+
T Consensus         7 ~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l   85 (233)
T 1iru_B            7 FSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQK-SILYDERSVHKVEPITKHIGLVYSGMGPDYRVL   85 (233)
T ss_dssp             SBSCCCCTTSCCHHHHHHHHHHHTSCCEEEEECSSCEEEEEECCCC-CSSBCSTTCCSSEESSSSEEEEEEECHHHHHHH
T ss_pred             CCceeECCCCeEehhHhHHHHHHcCCcEEEEEeCCEEEEEEEecCC-ccccccccCCeEEEECCCEEEEEEEccHHHHHH
Confidence            3456799995   579999999999999999999999999999998 789999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH--HhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeEEEcc
Q 026175           83 LRNLDELILYDNMWDDGNSLGPKELHSYLTRVM--YNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGF  160 (242)
Q Consensus        83 ~~~lr~~~~~~~~~~~g~~i~~~~la~~l~~~~--~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~aiG~  160 (242)
                      .++++. .++.|+++++.+++++.+++++++.+  |++++++|||+|++||+|+|+++|+||++||+|++.+++++|+|+
T Consensus        86 ~~~~~~-~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rP~~v~~lvaG~D~~gp~Ly~id~~G~~~~~~~~aiG~  164 (233)
T 1iru_B           86 VHRARK-LAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKATAMGK  164 (233)
T ss_dssp             HHHHHH-HHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCSEEEEEEEECSSSEEEEEECTTSCEEEBSEEEEST
T ss_pred             HHHHHH-HHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCCCCcEEEEEEEEEeCCCCeEEEECCCCCEEEeeEEEECC
Confidence            999998 48899999999999999999999998  777777899999999999998899999999999999999999999


Q ss_pred             chHhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCeEEeCCcccccccc
Q 026175          161 GNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALKTFWG  227 (242)
Q Consensus       161 g~~~a~~~Le~~~~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g~~~~~~~ei~~~~~  227 (242)
                      |+++++++||++|+++||++||++++++||+.+.++| .++++++|++|+++|++.++++||+.+++
T Consensus       165 gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~d-~sg~~i~v~vi~~~g~~~l~~~ei~~~~~  230 (233)
T 1iru_B          165 NYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQ-MTEDNIEVGICNEAGFRRLTPTEVKDYLA  230 (233)
T ss_dssp             THHHHHHHHHHHCCTTCCHHHHHHHHHHHHHTTCCSC-CCSSSEEEEEEETTEEEECCHHHHHHHHT
T ss_pred             CCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcc-CCCCCEEEEEEECCCEEECCHHHHHHHHH
Confidence            9999999999999999999999999999999999999 77899999999999999999999987654

>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A

Probab=100.00  E-value=1.2e-49  Score=339.33  Aligned_cols=218  Identities=20%  Similarity=0.230  Sum_probs=202.2

Q ss_pred             hhccCCCCCCC---CCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHH
Q 026175            5 QAKQGLVGPND---PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQE   81 (242)
Q Consensus         5 ~~~~~~~~~~~---~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~   81 (242)
                      |-...+|.|+|   ++||+++|+++|+|+|||+++||||||+|+|.+. .++.+++.+||++|++|++++++|..+|++.
T Consensus         9 d~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~-~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~   87 (233)
T 1yar_A            9 SRAITVFSPDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRS-RLIEQNSIEKIQLIDDYVAAVTSGLVADARV   87 (233)
T ss_dssp             ----CCCCTTSCCHHHHHHHHHHTTSCCEEEEEETTEEEEEECCCCCC-TTBCSTTCCSEEEEETTEEEEEEEBHHHHHH
T ss_pred             CCCCceECcCCeeHHHHhHHHHHhcCCcEEEEEECCEEEEEEeccCCc-ccccccccCeEEEecCCEEEEEeeCHHHHHH
Confidence            44567899996   6789999999999999999999999999999996 5778899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHH--hhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeEEEc
Q 026175           82 LLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMY--NRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATG  159 (242)
Q Consensus        82 l~~~lr~~~~~~~~~~~g~~i~~~~la~~l~~~~~--~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~aiG  159 (242)
                      +.++++. .++.|+++++++++++.+|+++++.++  ++++++|||+|++||+|+|+++|+||.+||+|++.+++++|+|
T Consensus        88 l~~~~~~-~~~~~~~~~~~~~~v~~~a~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~gp~Ly~id~~G~~~~~~~~aiG  166 (233)
T 1yar_A           88 LVDFARI-SAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKATAIG  166 (233)
T ss_dssp             HHHHHHH-HHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBTTBCCCCEEEEEEEECSSCEEEEEECTTCCEEEBSEEEES
T ss_pred             HHHHHHH-HHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCcCcceEEEEEEEEeCCCCEEEEECCCCCEEeeeEEEEc
Confidence            9999998 488999999999999999999999985  5666789999999999999889999999999999999999999


Q ss_pred             cchHhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCC-eEEeCCcccccc
Q 026175          160 FGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEG-TTISQPYALKTF  225 (242)
Q Consensus       160 ~g~~~a~~~Le~~~~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g-~~~~~~~ei~~~  225 (242)
                      +|+++++++||+.|+++||++||++++++||+.+.++|. ++++++|++|+++| ++.++++||+..
T Consensus       167 ~gs~~a~~~Le~~~~~~~s~eea~~la~~al~~~~~~d~-s~~~i~v~vi~~~~~~~~~~~~ei~~~  232 (233)
T 1yar_A          167 SGKDAVVSFLEREYKENLPEKEAVTLGIKALKSSLEEGE-ELKAPEIASITVGNKYRIYDQEEVKKF  232 (233)
T ss_dssp             TTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHTSCSSC-CCCCCEEEEEETTSCCEECCHHHHHTT
T ss_pred             CCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhccC-CCCcEEEEEEECCCCEEECCHHHHHhh
Confidence            999999999999999999999999999999999999986 79999999999998 999999998764

>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...

Probab=100.00  E-value=3.7e-49  Score=338.36  Aligned_cols=222  Identities=14%  Similarity=0.196  Sum_probs=206.0

Q ss_pred             hhccCCCCCCC---CCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHH
Q 026175            5 QAKQGLVGPND---PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQE   81 (242)
Q Consensus         5 ~~~~~~~~~~~---~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~   81 (242)
                      |-...+|.|+|   ++||+++|+++|+|+|||+++||||||+|+|.+.+.++.+++.+||++|++|++++++|..+|++.
T Consensus         6 d~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~   85 (244)
T 1ryp_C            6 DSRTTIFSPEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEI   85 (244)
T ss_dssp             CCCTTCBCTTSCBHHHHHHHHHHTTSCCEEEEEETTEEEEEEECSSCCSSBCSTTCCSSEEESSSSEEEEEEECHHHHHH
T ss_pred             CCCCceECcCCeeHHHHhHHHHHhcCCcEEEEEeCCEEEEEEeeccCCcCccCCCCCCcEEEECCCEEEEEEEcHHHHHH
Confidence            34556888986   689999999999999999999999999999999776555889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH--HhhcCCCCCcceEEEEEEEE-CCcEEEEEECCCCceeeeCeEEE
Q 026175           82 LLRNLDELILYDNMWDDGNSLGPKELHSYLTRVM--YNRRNKFDPLWNSLVLGGVK-NGQKYLGMVSMIGVNFEDSHVAT  158 (242)
Q Consensus        82 l~~~lr~~~~~~~~~~~g~~i~~~~la~~l~~~~--~~~r~~~rP~~vs~lvaG~D-~~~p~Ly~idp~G~~~~~~~~ai  158 (242)
                      +.++++. .++.|+++++++++++.+++++++.+  |+++.++|||+|++||+|+| +++|+||++||+|++.+++++|+
T Consensus        86 l~~~~~~-~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~ai  164 (244)
T 1ryp_C           86 LINTARI-HAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISV  164 (244)
T ss_dssp             HHHHHHH-HHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSCCCCCEEEEEEEEETTTEEEEEEECTTCCEEEBSEEEE
T ss_pred             HHHHHHH-HHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccceEEEEEEEEEcCCCCCEEEEECCCccEEeeeEEEE
Confidence            9999998 58899999999999999999999998  66777789999999999999 88999999999999999999999


Q ss_pred             ccchHhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEc--CCC----eEEeCCcccccccc
Q 026175          159 GFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKIT--EEG----TTISQPYALKTFWG  227 (242)
Q Consensus       159 G~g~~~a~~~Le~~~~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~--k~g----~~~~~~~ei~~~~~  227 (242)
                      |+|+++++++||+.|+++|+++||++++++||..+.++|..++++++|++|+  ++|    ++.++++||+..++
T Consensus       165 Gsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~~~~~~~~~~l~~~ei~~~~~  239 (244)
T 1ryp_C          165 GANTSAAQTLLQMDYKDDMKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKGANDGEVYQKIFKPQEIKDILV  239 (244)
T ss_dssp             STTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSSSSCCGGGEEEEEEECCSSSSSCEEEECCHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHhccccCCCCcEEEEEEEeecCCCceeEEECCHHHHHHHHH
Confidence            9999999999999999999999999999999999999966789999999999  986    68999999987654

>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G

Probab=100.00  E-value=5.5e-49  Score=337.76  Aligned_cols=220  Identities=13%  Similarity=0.162  Sum_probs=206.5

Q ss_pred             hhccCCCCCCC---CCccCcccccc-CceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHH
Q 026175            5 QAKQGLVGPND---PIQRTQLPYVT-GTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQ   80 (242)
Q Consensus         5 ~~~~~~~~~~~---~~~~~~~a~~~-g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~   80 (242)
                      |-...+|.|++   +|||+++|+++ |+|+|||+++||||||+|+|.+ +.++.+++.+||++|++|++++++|..+|++
T Consensus        10 d~~~t~fsp~Grl~QvEya~~av~~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~   88 (246)
T 1iru_A           10 DRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVP-DKLLDSSTVTHLFKITENIGCVMTGMTADSR   88 (246)
T ss_dssp             TTTSSCCCTTSCCHHHHHHHHHHHTTCCEEEEEECSSEEEEEEECCCC-CSSBCGGGCCSEEESSSSCEEEEEECHHHHH
T ss_pred             CCCCccCCCCCeehHHHHHHHHHhcCCCCEEEEEeCCEEEEEEeecCC-CcccCCCccCceEEECCCEEEEEeccHHHHH
Confidence            44557899986   68999999999 9999999999999999999998 7899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH--HhhcCCCCCcceEEEEEEEEC-CcEEEEEECCCCceeeeCeEE
Q 026175           81 ELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVM--YNRRNKFDPLWNSLVLGGVKN-GQKYLGMVSMIGVNFEDSHVA  157 (242)
Q Consensus        81 ~l~~~lr~~~~~~~~~~~g~~i~~~~la~~l~~~~--~~~r~~~rP~~vs~lvaG~D~-~~p~Ly~idp~G~~~~~~~~a  157 (242)
                      .+.++++. .++.|+++++++++++.+|+++++.+  |++++++|||+|++||+|+|+ ++|+||++||+|++.+++++|
T Consensus        89 ~l~~~~~~-~~~~~~~~~~~~~~~~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~a  167 (246)
T 1iru_A           89 SQVQRARY-EAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATA  167 (246)
T ss_dssp             HHHHHHHH-HHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSBCCCSEEEEEEEEETTTEEEEEEECTTSCEEEBSEEE
T ss_pred             HHHHHHHH-HHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCCCCcceEEEEEEEeCCCCeEEEEEcCCeeEEEeeEEE
Confidence            99999998 58899999999999999999999874  888888899999999999995 899999999999999999999


Q ss_pred             EccchHhhHHHHhhhcCC--CCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCC--eEEeCCcccccccc
Q 026175          158 TGFGNHLARPILRDEWHE--NLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEG--TTISQPYALKTFWG  227 (242)
Q Consensus       158 iG~g~~~a~~~Le~~~~~--~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g--~~~~~~~ei~~~~~  227 (242)
                      +|+|++.++++||+.|++  +|+++||++++++||+.+.++| .++++++|++|+++|  +++++++||+...+
T Consensus       168 iG~gs~~a~~~Le~~~~~~~~ms~eea~~la~~al~~~~~rd-~sg~~i~v~vi~~~g~~~~~l~~~ei~~~~~  240 (246)
T 1iru_A          168 AGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSID-FKPSEIEVGVVTVENPKFRILTEAEIDAHLV  240 (246)
T ss_dssp             EETTHHHHHHHHHHHTTSCCCCCHHHHHHHHHHHHHHHTTCC-CCTTSEEEEEEETTEEEEEECCHHHHHHHHH
T ss_pred             ECCCcHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEEECCCCeEEECCHHHHHHHHH
Confidence            999999999999999999  9999999999999999999999 889999999999999  58899999987654

>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B

Probab=100.00  E-value=6.2e-49  Score=340.25  Aligned_cols=224  Identities=15%  Similarity=0.133  Sum_probs=208.2

Q ss_pred             hhccCCCCCCC---CCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHH
Q 026175            5 QAKQGLVGPND---PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQE   81 (242)
Q Consensus         5 ~~~~~~~~~~~---~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~   81 (242)
                      |-...+|.|+|   ++||+++|+.+|+|+|||+++||||||+|+|.+.+.++.+++.+||++|++|++++++|+.+|++.
T Consensus         6 d~~~t~fsp~Grl~QvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~   85 (261)
T 1iru_C            6 DSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANV   85 (261)
T ss_dssp             CCCTTCCCTTSCCHHHHHHHHHHTTSCCEEEEBCSSEEEEEECCCCCCTTBCCCSSCSSEEECSSSEEEEEEECHHHHHH
T ss_pred             CCCCccCCCCCeehHHHhHHHHHhcCCcEEEEEeCCEEEEEEecccCCcccccCCCCccEEEecCCEEEEEeEcHHHHHH
Confidence            45567899996   679999999999999999999999999999999887777777999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHH--hhcCCCCCcceEEEEEEEE-CCcEEEEEECCCCceeeeCeEEE
Q 026175           82 LLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMY--NRRNKFDPLWNSLVLGGVK-NGQKYLGMVSMIGVNFEDSHVAT  158 (242)
Q Consensus        82 l~~~lr~~~~~~~~~~~g~~i~~~~la~~l~~~~~--~~r~~~rP~~vs~lvaG~D-~~~p~Ly~idp~G~~~~~~~~ai  158 (242)
                      |+++++. .++.|+++++++++++.+++++++.++  ++++++|||+|++||+|+| +++|+||++||+|++.+++++|+
T Consensus        86 l~~~~~~-~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~ai  164 (261)
T 1iru_C           86 LTNELRL-IAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCI  164 (261)
T ss_dssp             HHHHHHH-HHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBSSCCCCCEEEEEEEEETTTEEEEEEEETTTEEEECSEEEE
T ss_pred             HHHHHHH-HHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcCcceEEEEEEEEeCCCCcEEEEECCCceEEeeeeEEe
Confidence            9999998 588999999999999999999999984  4566789999999999999 58999999999999999999999


Q ss_pred             ccchHhhHHHHhhhcCC-CCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCC----eEEeCCcccccccccc
Q 026175          159 GFGNHLARPILRDEWHE-NLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEG----TTISQPYALKTFWGFT  229 (242)
Q Consensus       159 G~g~~~a~~~Le~~~~~-~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g----~~~~~~~ei~~~~~~~  229 (242)
                      |+|+.+++++|++.|++ +||++||++++++||..+.++|..++++++|++|+++|    +++++++||+..+.-.
T Consensus       165 Gsgs~~a~~~Le~~~~~~~ms~eeA~~la~~al~~~~~~d~~sg~~i~v~vi~~~~~~~~~~~l~~~ei~~~l~~~  240 (261)
T 1iru_C          165 GNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLIKKH  240 (261)
T ss_dssp             STTTTHHHHHHHHHCCTTCCCHHHHHHHHHHHHHHSSSCTTCCSTTCEEEEEECCSSSCEEEECCHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEcCCCeeeEEECCHHHHHHHHHHH
Confidence            99999999999999999 99999999999999999999999999999999999987    6899999999976533

>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H

Probab=100.00  E-value=3.7e-48  Score=326.85  Aligned_cols=201  Identities=19%  Similarity=0.288  Sum_probs=189.5

Q ss_pred             ccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCC
Q 026175           23 PYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSL  102 (242)
Q Consensus        23 a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i  102 (242)
                      ++.+|+|+|||+++||||||+|+|.+.|.++.+++.+||++|+++++++++|..+|++.+.+++|. .++.|++++++++
T Consensus         4 ~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~-~~~~~~~~~~~~~   82 (217)
T 1yar_H            4 TLETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKA-ELELYRLQRRVNM   82 (217)
T ss_dssp             -----CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHH-HHHHHHHHHSSCC
T ss_pred             CCCCCccEEEEEeCCEEEEEEcCCCCCCCEEecCccCCeEEeCCCEEEEeCcCHHHHHHHHHHHHH-HHHHHHHHHCCCC
Confidence            567999999999999999999999998899999999999999999999999999999999999998 4889999999999


Q ss_pred             CHHHHHHHHHHHHHhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhhcCCCCCHHHH
Q 026175          103 GPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDG  182 (242)
Q Consensus       103 ~~~~la~~l~~~~~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea  182 (242)
                      +++.+++++++.+|.+|  +|||+|++||+|+| ++|+||++||+|++.+++++|+|+|+++++++||+.|+++||++||
T Consensus        83 ~v~~la~~l~~~~~~~r--~rp~~v~~lvaG~D-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea  159 (217)
T 1yar_H           83 PIEAVATLLSNMLNQVK--YMPYMVQLLVGGID-TAPHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEG  159 (217)
T ss_dssp             CHHHHHHHHHHHHHHTT--TSCCCEEEEEEEES-SSEEEEEECTTCCEEEESEEEESTTHHHHHHHHHHHCCTTCCHHHH
T ss_pred             CHHHHHHHHHHHHHhcC--CCCceEEEEEEEEC-CCCEEEEECCCCCeEecCEEEEcCCHHHHHHHHHhhcccCCCHHHH
Confidence            99999999999999876  78999999999999 8999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccCCCCcEEEEEEcC-CCeEEeCCcccccccc
Q 026175          183 VKLLEKCMRVLLYRDRSAVNKLQIAKITE-EGTTISQPYALKTFWG  227 (242)
Q Consensus       183 i~l~~~~l~~~~~~d~~s~~~i~v~ii~k-~g~~~~~~~ei~~~~~  227 (242)
                      ++++++||+.+.++|..++++++|++|++ +|++.++++||+..++
T Consensus       160 ~~la~~al~~~~~rd~~s~~~i~v~vi~~~~g~~~~~~~ei~~~~~  205 (217)
T 1yar_H          160 VDLVIRAISAAKQRDSASGGMIDVAVITRKDGYVQLPTDQIESRIR  205 (217)
T ss_dssp             HHHHHHHHHHHHHHCTTCCSCCEEEEEETTTEEEECCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCCCCCcEEEEEEECCCCEEEcCHHHHHHHHH
Confidence            99999999999999999999999999999 8999999999988765

>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...

Probab=100.00  E-value=1.7e-48  Score=332.14  Aligned_cols=216  Identities=16%  Similarity=0.097  Sum_probs=200.9

Q ss_pred             hhccCCCCCCC---CCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHH
Q 026175            5 QAKQGLVGPND---PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQE   81 (242)
Q Consensus         5 ~~~~~~~~~~~---~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~   81 (242)
                      |-...+|.|+|   ++||+++|+++|+|+|||+++||||||+|+|.+.+ +.  ++.+||++|++|++++++|..+|++.
T Consensus         6 d~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~-l~--~~~~Ki~~i~~~i~~~~aG~~aD~~~   82 (233)
T 1ryp_F            6 DGDTVTFSPTGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADE-LS--SYQKKIIKCDEHMGLSLAGLAPDARV   82 (233)
T ss_dssp             SSCTTCCCTTSCCHHHHHHHHHHHTSCCEEEEECSSEEEEEEECCCSST-TB--CCCCCEEEEETTEEEEEEECHHHHHH
T ss_pred             cCCCccCCCCCeehHHHHHHHHHHcCCCEEEEEcCCEEEEEEEeccccc-cc--cccCcEEEEcCCEEEEEEechHHHHH
Confidence            34567899986   68999999999999999999999999999999865 33  58899999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH--HhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeEEEc
Q 026175           82 LLRNLDELILYDNMWDDGNSLGPKELHSYLTRVM--YNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATG  159 (242)
Q Consensus        82 l~~~lr~~~~~~~~~~~g~~i~~~~la~~l~~~~--~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~aiG  159 (242)
                      +.++++. .++.|+++++++++++.+++++++.+  |+++.+.|||+|++||||+|+++|+||++||+|++.+++++|+|
T Consensus        83 l~~~~~~-~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~aiG  161 (233)
T 1ryp_F           83 LSNYLRQ-QCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKSGAHLLEFQPSGNVTELYGTAIG  161 (233)
T ss_dssp             HHHHHHH-HHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETTEEEEEEECTTSCEEEESEEEES
T ss_pred             HHHHHHH-HHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCCcCcceEEEEEEEeCCcCEEEEECCCCCeeeeeEEEEC
Confidence            9999998 58899999999999999999999998  77777789999999999999989999999999999999999999


Q ss_pred             cchHhhHHHHhhhcCC--CC--CHHHHHHHHHHHHHHHHhcc-cCCCCcEEEEEEcCC-CeEEeCCcccccc
Q 026175          160 FGNHLARPILRDEWHE--NL--SYEDGVKLLEKCMRVLLYRD-RSAVNKLQIAKITEE-GTTISQPYALKTF  225 (242)
Q Consensus       160 ~g~~~a~~~Le~~~~~--~~--s~eeai~l~~~~l~~~~~~d-~~s~~~i~v~ii~k~-g~~~~~~~ei~~~  225 (242)
                      +|++.++++||+.|++  +|  |++||+++++++|+.+. +| ..++++++|++|+++ |++.++++||+.+
T Consensus       162 ~gs~~a~~~Le~~~~~~~~m~~s~eea~~~a~~al~~~~-~d~~~s~~~i~v~vi~~~~~~~~l~~~ei~~~  232 (233)
T 1ryp_F          162 ARSQGAKTYLERTLDTFIKIDGNPDELIKAGVEAISQSL-RDESLTVDNLSIAIVGKDTPFTIYDGEAVAKY  232 (233)
T ss_dssp             TTHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHTTSC-CSSCCCTTTEEEEEEETTEEEEEEEGGGGGGG
T ss_pred             CCcHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHh-hcccCCCCcEEEEEEECCCCEEECCHHHHHhh
Confidence            9999999999999998  99  99999999999999998 77 578999999999999 7999999999875

>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}

Probab=100.00  E-value=7.8e-49  Score=340.07  Aligned_cols=221  Identities=17%  Similarity=0.243  Sum_probs=203.9

Q ss_pred             hhccCCCCCCC---CCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHH
Q 026175            5 QAKQGLVGPND---PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQE   81 (242)
Q Consensus         5 ~~~~~~~~~~~---~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~   81 (242)
                      |-...+|.|+|   +|||+++|+++|+|+|||+++||||||+|+|.+. .++.+++.+|||+|++|++++++|+.+|++.
T Consensus        13 d~~~t~fSp~Grl~QvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~-~li~~~~~~KI~~i~d~i~~~~aG~~aD~~~   91 (264)
T 3h4p_A           13 DRAITVFSPEGRLYQVEYAREAVRRGTTAIGIACKDGVVLAVDRRITS-KLVKIRSIEKIFQIDDHVAAATSGLVADARV   91 (264)
T ss_dssp             ---CCCCCSSSSCHHHHHHHHHHHHSCCEEEECCSSEEEEEEECCCCS-TTBCTTTCCCEEEEETTEEEEEEECSHHHHH
T ss_pred             CCCcceECCCCeeHHHHhHHHHHhcCCcEEEEEECCEEEEEEecCccC-CccccCccccEEEecCcEEEEeccchHHHHH
Confidence            33456799995   5899999999999999999999999999999995 5788899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH--HhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeEEEc
Q 026175           82 LLRNLDELILYDNMWDDGNSLGPKELHSYLTRVM--YNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATG  159 (242)
Q Consensus        82 l~~~lr~~~~~~~~~~~g~~i~~~~la~~l~~~~--~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~aiG  159 (242)
                      |++++|. .++.|+++++++++++.+|++|++.+  |++++++|||+|++||||+|+++|+||++||+|++.+++++|+|
T Consensus        92 l~~~~r~-~~~~y~~~~~~~i~v~~la~~l~~~~~~yt~~~~~rP~~v~~lvaG~D~~gp~Ly~iDp~G~~~~~~~~aiG  170 (264)
T 3h4p_A           92 LIDRARL-EAQIYRLTYGEEISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDKNEARLFETDPSGALIEYKATAIG  170 (264)
T ss_dssp             HHTTHHH-HHHHHHHTTCSCCCHHHHHHHHHHHHHHTTSBSSCCCCSEEEEEEEEETTEEEEEEECTTCCCEEESEEEES
T ss_pred             HHHHHHH-HHHhhHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCCeeEEEEEEEEeCCcCEEEEECCCceEEecCeEEEC
Confidence            9999998 48899999999999999999999987  66777899999999999999999999999999999999999999


Q ss_pred             cchHhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCC--CeEEeCCcccccccccc
Q 026175          160 FGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEE--GTTISQPYALKTFWGFT  229 (242)
Q Consensus       160 ~g~~~a~~~Le~~~~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~--g~~~~~~~ei~~~~~~~  229 (242)
                      +|+.+++++|++.|+++||++||++++++||..+.++  .++++++|++|+++  +++.++++||+..++-.
T Consensus       171 sgs~~a~~~Le~~~~~~ms~eea~~la~~al~~a~~~--~sg~~iev~vi~~~~~~~~~l~~~ei~~~~~~~  240 (264)
T 3h4p_A          171 SGRPVVMELLEKEYRDDITLDEGLELAITALTKANED--IKPENVDVCIITVKDAQFKKIPVEEIKKLIEKV  240 (264)
T ss_dssp             TTHHHHTTTHHHHCCTTCCSHHHHHHHHHHHHHHSSS--CCTTSEEEEEEETTTTEEEECCTTTTGGGTTTT
T ss_pred             CCHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhc--cCCCeEEEEEEEeCCCcEEECCHHHHHHHHHHH
Confidence            9999999999999999999999999999999999976  78999999999986  48899999999877544

>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D

Probab=100.00  E-value=1.1e-48  Score=334.87  Aligned_cols=220  Identities=13%  Similarity=0.194  Sum_probs=205.3

Q ss_pred             hhccCCCCCCC---CCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHH
Q 026175            5 QAKQGLVGPND---PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQE   81 (242)
Q Consensus         5 ~~~~~~~~~~~---~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~   81 (242)
                      |-...+|.|+|   ++||+++|+.+|+|+|||+++||||||+|+|.+.+.++ +++.+||++|++|++++++|..+|++.
T Consensus         9 d~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~Ki~~i~~~i~~~~aG~~aD~~~   87 (241)
T 1iru_E            9 DRGVNTFSPEGRLFQVEYDIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLME-PSSIEKIVEIDAHIGCAMSGLIADAKT   87 (241)
T ss_dssp             CCCTTCBCTTSCBHHHHHHHHHHTTSCCEEEEEETTEEEEEEECCCCCTTBC-TTSCCSEEEEETTEEEEEEECHHHHHH
T ss_pred             CCCCceECCCCccHHHHHHHHHHHcCCcEEEEEcCCEEEEEEecccCCcCcC-ccccceEEEEcCCEEEEEeeChHHHHH
Confidence            45567899995   68999999999999999999999999999999977665 889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH--HhhcCC-----CCCcceEEEEEEEECCcEEEEEECCCCceeeeC
Q 026175           82 LLRNLDELILYDNMWDDGNSLGPKELHSYLTRVM--YNRRNK-----FDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDS  154 (242)
Q Consensus        82 l~~~lr~~~~~~~~~~~g~~i~~~~la~~l~~~~--~~~r~~-----~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~  154 (242)
                      +.++++. .++.|+++++++++++.+++++++.+  |+++.+     .|||+|++||+|+|+++|+||.+||+|++.+++
T Consensus        88 l~~~~~~-~~~~~~~~~~~~~~v~~~a~~l~~~~~~y~~~~~~~~l~~rp~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~  166 (241)
T 1iru_E           88 LIDKARV-ETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSGTFVQCD  166 (241)
T ss_dssp             HHHHHHH-HHHHHHHHHSSCCCHHHHHHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEETTEEEEEEECTTSCEEEBS
T ss_pred             HHHHHHH-HHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccccccccccccceEEEEEEEEeCCCCEEEEECCCCcEEecc
Confidence            9999998 48899999999999999999999988  777766     799999999999998899999999999999999


Q ss_pred             eEEEccchHhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCC-eEEeCCcccccccc
Q 026175          155 HVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEG-TTISQPYALKTFWG  227 (242)
Q Consensus       155 ~~aiG~g~~~a~~~Le~~~~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g-~~~~~~~ei~~~~~  227 (242)
                      ++|+|+|+++++++||+.|+++||++||++++++||..+.++ ..++.+++|++|+++| +++++++||+..++
T Consensus       167 ~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~~~~l~~~ei~~~~~  239 (241)
T 1iru_E          167 ARAIGSASEGAQSSLQELYHKSMTLKEAIKSSLIILKQVMEE-KLNATNIELATVQPGQNFHMFTKEELEEVIK  239 (241)
T ss_dssp             EEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSS-CCCTTSEEEEEECSSSCCEECCHHHHHHHHT
T ss_pred             eEEECCCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhc-cCCCCCEEEEEEECCCCeEECCHHHHHHHHH
Confidence            999999999999999999999999999999999999999988 7789999999999998 78999999987653

>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...

Probab=100.00  E-value=1.2e-48  Score=334.90  Aligned_cols=218  Identities=16%  Similarity=0.220  Sum_probs=202.7

Q ss_pred             ccCCCCCCC---CCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHH
Q 026175            7 KQGLVGPND---PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELL   83 (242)
Q Consensus         7 ~~~~~~~~~---~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~   83 (242)
                      ...+|.|+|   +|||+++|+++|+|+|||+++||||||+|+|.+.+.++ +++.+||++|++|++++++|..+|++.+.
T Consensus         3 ~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~   81 (242)
T 1ryp_E            3 GVSTFSPEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLE-SDSIEKIVEIDRHIGCAMSGLTADARSMI   81 (242)
T ss_dssp             CTTCBCTTSCBHHHHHHHHHHTTSCCEEEEECSSCEEEEEECCCSSTTBC-GGGCCCEEEEETTEEEEEEESGGGHHHHH
T ss_pred             CCceECCCCcChHHHhHHHHHHcCCCEEEEEECCEEEEEEeecCCCcCcc-CccCCceEEEcCCEEEEEeecHHHHHHHH
Confidence            356788886   68999999999999999999999999999999977655 88999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH--HhhcCC------CCCcceEEEEEEEE-CCcEEEEEECCCCceeeeC
Q 026175           84 RNLDELILYDNMWDDGNSLGPKELHSYLTRVM--YNRRNK------FDPLWNSLVLGGVK-NGQKYLGMVSMIGVNFEDS  154 (242)
Q Consensus        84 ~~lr~~~~~~~~~~~g~~i~~~~la~~l~~~~--~~~r~~------~rP~~vs~lvaG~D-~~~p~Ly~idp~G~~~~~~  154 (242)
                      ++++. .++.|+++++++++++.+++++++.+  |+++++      .|||+|++||+|+| +++|+||++||+|++.+++
T Consensus        82 ~~~~~-~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~~~~l~~RP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~  160 (242)
T 1ryp_E           82 EHART-AAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYN  160 (242)
T ss_dssp             HHHHH-HHHHHHHHHSSCCCHHHHHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEEEETTTEEEEEEECTTSCEEEBS
T ss_pred             HHHHH-HHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccccccCcceEEEEEEEEeCCCCCEEEEECCCCCEeccC
Confidence            99998 48899999999999999999999977  445655      89999999999999 7899999999999999999


Q ss_pred             eEEEccchHhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCC-eEEeCCcccccccc
Q 026175          155 HVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEG-TTISQPYALKTFWG  227 (242)
Q Consensus       155 ~~aiG~g~~~a~~~Le~~~~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g-~~~~~~~ei~~~~~  227 (242)
                      ++|+|+|+++++++||+.|+++||++||++++++||..+.++ ..++.+++|++|+++| +++++++||+..++
T Consensus       161 ~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~~~~~~~~ei~~~~~  233 (242)
T 1ryp_E          161 AKAIGSGSEGAQAELLNEWHSSLTLKEAELLVLKILKQVMEE-KLDENNAQLSCITKQDGFKIYDNEKTAELIK  233 (242)
T ss_dssp             EEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSS-CCCTTSEEEEEEETTTEEEECCHHHHHHHHH
T ss_pred             EEEECCCCHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHhhc-cCCCCcEEEEEEECCCCeEECCHHHHHHHHH
Confidence            999999999999999999999999999999999999999988 6789999999999998 68999999988664

>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4

Probab=100.00  E-value=2.1e-47  Score=318.67  Aligned_cols=197  Identities=22%  Similarity=0.329  Sum_probs=189.7

Q ss_pred             ceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 026175           28 TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKEL  107 (242)
Q Consensus        28 ~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~~~l  107 (242)
                      +|+|||+++||||||+|+|.+.|.++.+++.+|||+|++|++++++|..+|++.+.+++|. .++.|+++++++++++.+
T Consensus         1 tt~vgi~~~dgVvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~-~~~~~~~~~~~~~~~~~~   79 (202)
T 1j2q_H            1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKI-EANLYEIRRERKPTVRAI   79 (202)
T ss_dssp             CCEEEEEETTEEEEEEECCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHH-HHHHHHHHHSSCCCHHHH
T ss_pred             CcEEEEEeCCEEEEEECCCcCcCCEEeeccccCEEEcCCCEEEEecccHHHHHHHHHHHHH-HHHHHHHHHCCCCCHHHH
Confidence            6899999999999999999998899999999999999999999999999999999999998 588999999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeC-eEEEccchHhhHHHHhhhcCCCCCHHHHHHHH
Q 026175          108 HSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDS-HVATGFGNHLARPILRDEWHENLSYEDGVKLL  186 (242)
Q Consensus       108 a~~l~~~~~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~-~~aiG~g~~~a~~~Le~~~~~~~s~eeai~l~  186 (242)
                      ++++++.+|.+|  +|||+|++||+|+|+++|+||++||+|++.+++ ++|+|+|+++++++||+.|+++||++||++++
T Consensus        80 a~~l~~~~~~~r--~rp~~~~~lvaG~D~~gp~Ly~id~~G~~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~~la  157 (202)
T 1j2q_H           80 ATLTSNLLNSYR--YFPYLVQLLIGGIDSEGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELA  157 (202)
T ss_dssp             HHHHHHHHHHTT--TSCCCEEEEEEEEETTEEEEEEECTTCCEEEESSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHH
T ss_pred             HHHHHHHHHhhC--CCCceEEEEEEEEeCCCCEEEEECCCCCeeecCCEEEEcCCHHHHHHHHHhhcCCCcCHHHHHHHH
Confidence            999999999876  789999999999998899999999999999999 99999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccCCCCcEEEEEEcCCCeEEeCCcccccccc
Q 026175          187 EKCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALKTFWG  227 (242)
Q Consensus       187 ~~~l~~~~~~d~~s~~~i~v~ii~k~g~~~~~~~ei~~~~~  227 (242)
                      ++||+.+.++|..++++++|++|+++|++.++++||+...+
T Consensus       158 ~~al~~~~~~d~~s~~~i~v~vi~~~g~~~l~~~ei~~~~~  198 (202)
T 1j2q_H          158 VRAIYSAMKRDSASGDGIDVVKITEDEFYQYSPEEVEQILA  198 (202)
T ss_dssp             HHHHHHHHTTCTTSCSCEEEEEECSSCEEECHHHHHHHHGG
T ss_pred             HHHHHHHHhcCCCCCCcEEEEEEeCCCeEEeCHHHHHHHHH
Confidence            99999999999999999999999999999999999987654

>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H

Probab=100.00  E-value=3.4e-47  Score=324.35  Aligned_cols=203  Identities=21%  Similarity=0.231  Sum_probs=193.7

Q ss_pred             ceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 026175           28 TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKEL  107 (242)
Q Consensus        28 ~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~~~l  107 (242)
                      ||+|||+++||||||+|+|.+.+.++.+++.+|||+|++|++++++|..+|++.+.++++. .++.|+++++++++++.+
T Consensus         1 TT~vgi~~kdgVVlaaD~r~t~g~~v~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~-~~~~~~~~~~~~~~v~~l   79 (234)
T 3unf_H            1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAAS-KMELHALSTGREPRVATV   79 (234)
T ss_dssp             CEEEEEECSSEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHH-HHHHHHHHHCSCCCHHHH
T ss_pred             CeEEEEEeCCEEEEEECCCcccCCEeccCccccEEEecCCEEEEecccHHHHHHHHHHHHH-HHHhhHHhcCCCCCHHHH
Confidence            6999999999999999999998888888999999999999999999999999999999998 488999999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhhcCCCCCHHHHHHHHH
Q 026175          108 HSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLE  187 (242)
Q Consensus       108 a~~l~~~~~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eeai~l~~  187 (242)
                      ++++++.+|.++   +||++++||||+|+++|+||++||+|++.+++++|+|+|+.+++++||+.|+++||++||+++++
T Consensus        80 a~~l~~~l~~~~---~p~~v~llvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la~  156 (234)
T 3unf_H           80 TRILRQTLFRYQ---GHVGASLVVGGVDLNGPQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDRFQPNMTLEAAQELLV  156 (234)
T ss_dssp             HHHHHHHHHHTT---TCSCEEEEEEEEETTEEEEEEECTTSCEEECSEEEEETTHHHHHHHHHHHCCSSCCHHHHHHHHH
T ss_pred             HHHHHHHHHhcC---CCccEEEEEEEEeCCCCEEEEECCCCCEEeccEEEEcCCchhhHHHHHhccCCCCCHHHHHHHHH
Confidence            999999988653   69999999999999899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcccCCCCcEEEEEEcCCCeEEeCCcccccccccccccCC
Q 026175          188 KCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALKTFWGFTAFQNP  234 (242)
Q Consensus       188 ~~l~~~~~~d~~s~~~i~v~ii~k~g~~~~~~~ei~~~~~~~~~~~~  234 (242)
                      +||+.+..+|..++++++|++|+++|++.+++++++..|.+++..+.
T Consensus       157 ~al~~~~~~D~~sg~~iev~vi~~dg~~~l~~~~i~~~~~~~~~~~~  203 (234)
T 3unf_H          157 EAITAGILSDLGSGGNVDACVITAGGAKLQRALSTPTEPVQRAGRYR  203 (234)
T ss_dssp             HHHHHHHHHBTTCCSCEEEEEEESSCEEEEEEEECCCCCCCCCCCCC
T ss_pred             HHHHHHHhhcCCCCCcEEEEEEECCCEEEeCceeccccccccccccc
Confidence            99999999999999999999999999999999999999999865543

>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*

Probab=100.00  E-value=2.3e-48  Score=334.34  Aligned_cols=221  Identities=14%  Similarity=0.200  Sum_probs=205.1

Q ss_pred             hhhccCCCCCCC---CCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHH
Q 026175            4 IQAKQGLVGPND---PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQ   80 (242)
Q Consensus         4 ~~~~~~~~~~~~---~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~   80 (242)
                      -|-...+|.|+|   +|||+++|+++|+|+|||+++||||||+|+|.+.+ ++.+++.+|||+|++|++++++|+.+|++
T Consensus         3 yd~~~t~fsp~Grl~QvEYA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~-l~~~~~~~KI~~i~~~i~~~~aG~~aD~~   81 (248)
T 1iru_D            3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAK-LQDERTVRKICALDDNVCMAFAGLTADAR   81 (248)
T ss_dssp             CCCCCSCCCTTSCCHHHHHHHHHHHTSCCEEEECCSSEEEEEECCCCCCS-SSCGGGGCSEEESSSSCEEEEEECHHHHH
T ss_pred             ccCCCceECCCCcchHHHHHHHHHHcCCCEEEEEeCCEEEEEEeeccccc-CccCCCCCcEEEEcCCEEEEEeecHHHHH
Confidence            355667899996   56999999999999999999999999999999965 77888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH--HhhcCCCCCcceEEEEEEEE-CCcEEEEEECCCCceeeeCeEE
Q 026175           81 ELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVM--YNRRNKFDPLWNSLVLGGVK-NGQKYLGMVSMIGVNFEDSHVA  157 (242)
Q Consensus        81 ~l~~~lr~~~~~~~~~~~g~~i~~~~la~~l~~~~--~~~r~~~rP~~vs~lvaG~D-~~~p~Ly~idp~G~~~~~~~~a  157 (242)
                      .+.++++. .++.|+++++++++++.+++++++.+  |++++++|||+|++||+|+| +++|+||++||+|++.+++++|
T Consensus        82 ~l~~~~~~-~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~a  160 (248)
T 1iru_D           82 IVINRARV-ECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANA  160 (248)
T ss_dssp             HHHHHHHH-HHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEECSSSCEEEEEECTTSCEEEBSEEE
T ss_pred             HHHHHHHH-HHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCcccccEEEEEEEEeCCCCcEEEEEcCCCcEEEeeEEE
Confidence            99999998 58899999999999999999999998  66677789999999999999 8899999999999999999999


Q ss_pred             EccchHhhHHHHhhhcCCCC--CHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCC-eEEeCCcccccccccc
Q 026175          158 TGFGNHLARPILRDEWHENL--SYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEG-TTISQPYALKTFWGFT  229 (242)
Q Consensus       158 iG~g~~~a~~~Le~~~~~~~--s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g-~~~~~~~ei~~~~~~~  229 (242)
                      +|+|++.++++||+.|+++|  |++||++++++||..+.+   .++++++|++|+++| +++++++||+..++..
T Consensus       161 iG~gs~~a~~~Le~~~~~~m~~s~eea~~la~~al~~~~~---~sg~~i~v~vi~~~g~~~~l~~~ei~~~~~~~  232 (248)
T 1iru_D          161 IGRGAKSVREFLEKNYTDEAIETDDLTIKLVIKALLEVVQ---SGGKNIELAVMRRDQSLKILNPEEIEKYVAEI  232 (248)
T ss_dssp             ESTTHHHHHHHHTTTCCSSTTCSHHHHHHHHHHHHHTTSC---TTSTTCCEEEEESSSCEECCCHHHHHHHTTTT
T ss_pred             ECCCcHHHHHHHHHhhcccccCCHHHHHHHHHHHHHHHHc---CCCCcEEEEEEECCCcEEECCHHHHHHHHHHH
Confidence            99999999999999999999  999999999999999875   568899999999998 9999999999876543

>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...

Probab=100.00  E-value=6e-48  Score=330.34  Aligned_cols=217  Identities=14%  Similarity=0.178  Sum_probs=200.8

Q ss_pred             ccCCCCCCC---CCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHH
Q 026175            7 KQGLVGPND---PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELL   83 (242)
Q Consensus         7 ~~~~~~~~~---~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~   83 (242)
                      ...+|.|+|   +|||+++|+++|+|+|||+++||||||+|+|.+.+.++..++.+||++|++|++++++|..+|++.+.
T Consensus         5 ~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~   84 (241)
T 1ryp_D            5 ALSIFSPDGHIFQVEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRILI   84 (241)
T ss_dssp             CCSCCBTTTBCHHHHHHHHHHTTSCCEEEEECSSCEEEEEECCCSSCCBCTTTSCCSEEEEETTEEEEEEECHHHHHHHH
T ss_pred             CceeECCCCcchHHHHHHHHHHcCCCEEEEEeCCEEEEEEeeccCccCccccCCcCcEEEecCCEEEEEeecHHHHHHHH
Confidence            456788885   56999999999999999999999999999999977666556999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHh--hcCCCCCcceEEEEEEEEC--CcEEEEEECCCCceeeeCeEEEc
Q 026175           84 RNLDELILYDNMWDDGNSLGPKELHSYLTRVMYN--RRNKFDPLWNSLVLGGVKN--GQKYLGMVSMIGVNFEDSHVATG  159 (242)
Q Consensus        84 ~~lr~~~~~~~~~~~g~~i~~~~la~~l~~~~~~--~r~~~rP~~vs~lvaG~D~--~~p~Ly~idp~G~~~~~~~~aiG  159 (242)
                      ++++. .++.|+++++++++++.+|+++++.+|.  +++++|||+|++||+|+|+  ++|+||++||+|++.+++++|+|
T Consensus        85 ~~~~~-~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~aiG  163 (241)
T 1ryp_D           85 EKARV-EAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIG  163 (241)
T ss_dssp             HHHHH-HHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSSTTBCCCSEEEEEEECCTTCCSCEEEEECTTSCEEEBSEEEES
T ss_pred             HHHHH-HHHHHHHHHCCCCCHHHHHHHHHHHHHHHccCCCCCCcceeeEEEEEcCCCCCeeEEEECCCCCEEEeeeEEEC
Confidence            99998 4889999999999999999999999865  5567899999999999997  89999999999999999999999


Q ss_pred             cchHhhHHHHhhhc---CCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCC-eEEeCCcccccccc
Q 026175          160 FGNHLARPILRDEW---HENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEG-TTISQPYALKTFWG  227 (242)
Q Consensus       160 ~g~~~a~~~Le~~~---~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g-~~~~~~~ei~~~~~  227 (242)
                      +|+++++++||+.|   +++||++||++++++||..+.+   .++++++|++|+++| ++.++++||+..++
T Consensus       164 ~gs~~a~~~Le~~~~~~~~~ms~eea~~l~~~al~~~~~---~sg~~i~v~vi~~~~~~~~l~~~ei~~~~~  232 (241)
T 1ryp_D          164 RNSKTVREFLEKNYDRKEPPATVEECVKLTVRSLLEVVQ---TGAKNIEITVVKPDSDIVALSSEEINQYVT  232 (241)
T ss_dssp             TTHHHHHHHHHTTCCTTSCCCSHHHHHHHHHHHHHHHHC---SCSTTEEEEEEETTTEEEECCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHhc---CCCCcEEEEEEECCCcEEECCHHHHHHHHH
Confidence            99999999999999   9999999999999999999984   778999999999996 99999999988654

>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E

Probab=100.00  E-value=5.8e-48  Score=334.53  Aligned_cols=221  Identities=16%  Similarity=0.125  Sum_probs=204.2

Q ss_pred             hhccCCCCCCC---CCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHH
Q 026175            5 QAKQGLVGPND---PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQE   81 (242)
Q Consensus         5 ~~~~~~~~~~~---~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~   81 (242)
                      |-...+|.|+|   ++||+++|+++|+|+|||+++||||||+|+|.+.+ +.  ++.+||++|++|++++++|+.+|++.
T Consensus         7 d~~~t~fsP~Grl~QvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~g-l~--~~~~KI~~i~~~i~~~~aG~~aD~~~   83 (263)
T 1iru_F            7 DNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSE-LA--AHQKKILHVDNHIGISIAGLTADARL   83 (263)
T ss_dssp             TSCTTCCCTTSCCHHHHHHHHHHHHSCCEEEEECSSEEEEEEECCCSST-TB--CCCCCEEEEETTEEEEEEECHHHHHH
T ss_pred             CCCCccCCCCCeehHHHHHHHHHHcCCcEEEEEeCCEEEEEEecccccc-cc--cchhcEEEEcCCEEEEEeCCHHHHHH
Confidence            34456788885   68999999999999999999999999999999865 33  58899999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH--HhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeEEEc
Q 026175           82 LLRNLDELILYDNMWDDGNSLGPKELHSYLTRVM--YNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATG  159 (242)
Q Consensus        82 l~~~lr~~~~~~~~~~~g~~i~~~~la~~l~~~~--~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~aiG  159 (242)
                      |.++++. .++.|+++++++++++.+++++++.+  |++++++|||+|++||+|+|+++|+||++||+|++.+++++|+|
T Consensus        84 l~~~~~~-~~~~~~~~~~~~i~v~~la~~l~~~l~~~t~~~~~RP~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~aiG  162 (263)
T 1iru_F           84 LCNFMRQ-ECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIG  162 (263)
T ss_dssp             HHHHHHH-HHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETTEEEEEEECSSSCEEEESEEEES
T ss_pred             HHHHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHHHhhcccccccceEEEEEEEEcCCCCEEEEECCCCCEEEeeEEEcC
Confidence            9999998 58899999999999999999999998  46667789999999999999989999999999999999999999


Q ss_pred             cchHhhHHHHhhhcCC--CCCHHHHHHHHHHHHHHHHhcc-cCCCCcEEEEEEcCC-CeEEeCCcccccccccc
Q 026175          160 FGNHLARPILRDEWHE--NLSYEDGVKLLEKCMRVLLYRD-RSAVNKLQIAKITEE-GTTISQPYALKTFWGFT  229 (242)
Q Consensus       160 ~g~~~a~~~Le~~~~~--~~s~eeai~l~~~~l~~~~~~d-~~s~~~i~v~ii~k~-g~~~~~~~ei~~~~~~~  229 (242)
                      +|++.++++||+.|++  +||++||++++++||+.+.++| ..++.+++|++|+++ ++++++++||+.+++-.
T Consensus       163 sgs~~a~~~Le~~~~~~~~ms~eea~~la~~al~~~~~rd~~~sg~~iev~vi~~~~~~~~l~~~ei~~~~~~~  236 (263)
T 1iru_F          163 ARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGL  236 (263)
T ss_dssp             TTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCTTCCCCTTTEEEEEEETTEEEEEECSGGGHHHHTTC
T ss_pred             cccHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHhccccCCCCcEEEEEEECCCCeEECCHHHHHHHHHHH
Confidence            9999999999999998  9999999999999999999999 588999999999999 79999999999876543

>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F

Probab=100.00  E-value=3.7e-48  Score=334.19  Aligned_cols=223  Identities=16%  Similarity=0.168  Sum_probs=205.8

Q ss_pred             hhccCCCCCCCC---CccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHH
Q 026175            5 QAKQGLVGPNDP---IQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQE   81 (242)
Q Consensus         5 ~~~~~~~~~~~~---~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~   81 (242)
                      |-...+|.|+|+   |||+++|+++|+|+|||+++||||||+|+|.+.+.++ .++.+|||+|++|++++++|..+|++.
T Consensus         8 d~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~KI~~i~~~i~~~~aG~~aD~~~   86 (254)
T 1iru_G            8 DLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYE-EGSNKRLFNVDRHVGMAVAGLLADARS   86 (254)
T ss_dssp             TSCTTCCCTTSCCHHHHHHHHHHHTSCCEEEEECSSBEEEEEEEECSCTTBC-TTTTCCEEEEETTEEEEEEECHHHHHH
T ss_pred             CCCCccCCcCCccHHHHhHHHHHhcCCCEEEEEECCEEEEEEecccCCCCcC-cCcCCcEEEECCCEEEEEecChHHHHH
Confidence            345678999964   6999999999999999999999999999999976665 589999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH--HhhcCCCCCcceEEEEEEEE-CCcEEEEEECCCCceeeeCeEEE
Q 026175           82 LLRNLDELILYDNMWDDGNSLGPKELHSYLTRVM--YNRRNKFDPLWNSLVLGGVK-NGQKYLGMVSMIGVNFEDSHVAT  158 (242)
Q Consensus        82 l~~~lr~~~~~~~~~~~g~~i~~~~la~~l~~~~--~~~r~~~rP~~vs~lvaG~D-~~~p~Ly~idp~G~~~~~~~~ai  158 (242)
                      |.++++. .++.|+++++++++++.+++++++.+  |++++++|||+|++||||+| +++|+||++||+|++.+++++|+
T Consensus        87 l~~~~~~-~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~ai  165 (254)
T 1iru_G           87 LADIARE-EASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAI  165 (254)
T ss_dssp             HHHHHHH-HHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEETTTEEEEEEECTTCCEEEBSEEEE
T ss_pred             HHHHHHH-HHHHHHHHhCCCCCHHHHHHHHHHHHHHhccccccccceEEEEEEEEeCCCCcEEEEEcCCCCEEeeeeEEe
Confidence            9999998 58899999999999999999999998  55677789999999999999 88999999999999999999999


Q ss_pred             ccchHhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCC--C-eEEeCCcccccccccc
Q 026175          159 GFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEE--G-TTISQPYALKTFWGFT  229 (242)
Q Consensus       159 G~g~~~a~~~Le~~~~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~--g-~~~~~~~ei~~~~~~~  229 (242)
                      |+|+++++++||+.|+++|+++||+++++++|+.+.+++..++.+++|++|+++  | ++++++++|+..++..
T Consensus       166 Gsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~~~~~~iev~vi~~~~~g~~~~l~~~~i~~~~~~~  239 (254)
T 1iru_G          166 GKARQAAKTEIEKLQMKEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGELTNGRHEIVPKDIREEAEKYA  239 (254)
T ss_dssp             STTHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHSCSSSSCCEEEEEEECBTTTTTCCEECCHHHHHHHHHHH
T ss_pred             cCccHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEEcCCCCCeEECCHHHHHHHHHHH
Confidence            999999999999999999999999999999999998877767889999999987  6 9999999999877643

>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*

Probab=100.00  E-value=5.6e-48  Score=331.51  Aligned_cols=219  Identities=18%  Similarity=0.263  Sum_probs=204.6

Q ss_pred             hhccCCCCCCC---CCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHH
Q 026175            5 QAKQGLVGPND---PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQE   81 (242)
Q Consensus         5 ~~~~~~~~~~~---~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~   81 (242)
                      |-...+|.|+|   ++||+++|+++|+|+|||+++||||||+|+|.+. .++.+++.+||++|++|++++++|..+|++.
T Consensus         9 d~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~-~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~   87 (246)
T 1j2p_A            9 DRAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGS-KLLEKDTIEKIYKIDEHICAATSGLVADARV   87 (246)
T ss_dssp             SSCTTCCCTTSCCHHHHHHHHHHHTSCCEEEEEETTEEEEEEECCCSC-TTBCGGGCCSEEECSSSEEEEEEECHHHHHH
T ss_pred             CCCCceECCCCeehHHHhHHHHHHcCCcEEEEEECCEEEEEEeccCCc-cccccCccCcEEEECCCEEEEEeEccHHHHH
Confidence            55567899996   6799999999999999999999999999999985 5667889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH--HhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeEEEc
Q 026175           82 LLRNLDELILYDNMWDDGNSLGPKELHSYLTRVM--YNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATG  159 (242)
Q Consensus        82 l~~~lr~~~~~~~~~~~g~~i~~~~la~~l~~~~--~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~aiG  159 (242)
                      +.++++. .++.|++.++++++++.+++++++.+  |++++++|||+|++||+|+| ++|+||++||+|++.+++++|+|
T Consensus        88 l~~~~~~-~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D-~gp~Ly~idp~G~~~~~~~~aiG  165 (246)
T 1j2p_A           88 LIDRARI-EAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVN-EVPKLYETDPSGALLEYKATAIG  165 (246)
T ss_dssp             HHHHHHH-HHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEES-SSEEEEEECTTCCEEEBSEEEES
T ss_pred             HHHHHHH-HHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCcccccEEEEEEEEC-CCCEEEEECCCceEEeeeEEEEC
Confidence            9999998 48899999999999999999999998  77777789999999999999 99999999999999999999999


Q ss_pred             cchHhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEc-C-CCeEEeCCcccccccc
Q 026175          160 FGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKIT-E-EGTTISQPYALKTFWG  227 (242)
Q Consensus       160 ~g~~~a~~~Le~~~~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~-k-~g~~~~~~~ei~~~~~  227 (242)
                      +|+++++++||+.|+++||++||++++++||..+.++ ..++++++|++|+ + ++++.++++||+..++
T Consensus       166 sgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~~~~~l~~~ei~~~~~  234 (246)
T 1j2p_A          166 MGRMAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIES-ELVPENIEVGYVKVDDRTFKEVSPEELKPYVE  234 (246)
T ss_dssp             TTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHTS-CCCGGGEEEEEEETTTCCCEECCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhc-cCCCCcEEEEEEEcCCCceEECCHHHHHHHHH
Confidence            9999999999999999999999999999999999987 7889999999999 6 4799999999987654

>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}

Probab=100.00  E-value=1.2e-47  Score=324.10  Aligned_cols=202  Identities=22%  Similarity=0.317  Sum_probs=192.0

Q ss_pred             CceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCHHH
Q 026175           27 GTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKE  106 (242)
Q Consensus        27 g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~~~  106 (242)
                      |+|+|||+++||||||+|+|.+.+.++.+++.+|||+|++|++++++|+.+|++.+.+++|. .++.|+++++++++++.
T Consensus         1 Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~-~~~~~~~~~~~~~~v~~   79 (219)
T 3h4p_a            1 MTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIA-EAKLYKMRTGRNIPPLA   79 (219)
T ss_dssp             -CCEEEEEETTEEEEECCCCEEETTEEEETTCCCEEEEETTEEEECCSCHHHHHHHHHHHHH-HHHHHHHHTSSCCCHHH
T ss_pred             CccEEEEEECCEEEEEEcCCcccCCEeeccccceeEEecCCEEEEeeEcHHHHHHHHHHHHH-HHHHHHHHcCCCCCHHH
Confidence            79999999999999999999998889999999999999999999999999999999999998 58899999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCcceEEEEEEEEC-CcEEEEEECCCCceeeeC-eEEEccchHhhHHHHhhhcCCCCCHHHHHH
Q 026175          107 LHSYLTRVMYNRRNKFDPLWNSLVLGGVKN-GQKYLGMVSMIGVNFEDS-HVATGFGNHLARPILRDEWHENLSYEDGVK  184 (242)
Q Consensus       107 la~~l~~~~~~~r~~~rP~~vs~lvaG~D~-~~p~Ly~idp~G~~~~~~-~~aiG~g~~~a~~~Le~~~~~~~s~eeai~  184 (242)
                      +++++++.+|.+|  +|||+|++||||+|+ ++|+||++||+|++.+++ ++|+|+|+++++++||+.|+++||++||++
T Consensus        80 la~~l~~~~~~~~--~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~ms~eea~~  157 (219)
T 3h4p_a           80 CATLLSNILHSSR--MFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYDRDMSVEEGIK  157 (219)
T ss_dssp             HHHHHHHHHHHTT--TTTCCCCCEEEEEETTTEEEEEEECSSCCEEECSSEEEESTTHHHHHHHHHTSCCTTCCHHHHHH
T ss_pred             HHHHHHHHHHHhc--CCCceEEEEEEEEeCCCCcEEEEECCCCceEecCCEEEEcCCHHHHHHHHHHhcCCCCCHHHHHH
Confidence            9999999998875  689999999999997 899999999999999999 999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcccCCCCcEEEEEEcCCCeEEeCCcccccccccccc
Q 026175          185 LLEKCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALKTFWGFTAF  231 (242)
Q Consensus       185 l~~~~l~~~~~~d~~s~~~i~v~ii~k~g~~~~~~~ei~~~~~~~~~  231 (242)
                      ++++||..+.++|..++++++|++|+++|++.++++||+.+.+-.+.
T Consensus       158 la~~al~~~~~rd~~sg~~i~v~vi~~~g~~~l~~~ei~~~l~~~~~  204 (219)
T 3h4p_a          158 LALNALKSAMERDTFSGNGISLAVITKDGVKIFEDEEIEKILDSMKA  204 (219)
T ss_dssp             HHHHHHHHHHTSCSSCCSCCCEEEEETTEEEECCHHHHHHHHHHCC-
T ss_pred             HHHHHHHHHHhhcCCCCCcEEEEEEeCCCeEEcCHHHHHHHHHHhhc
Confidence            99999999999999999999999999999999999999987765543

>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...

Probab=100.00  E-value=1.2e-47  Score=329.13  Aligned_cols=217  Identities=19%  Similarity=0.153  Sum_probs=200.3

Q ss_pred             hccCCCCCCC---CCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHH
Q 026175            6 AKQGLVGPND---PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQEL   82 (242)
Q Consensus         6 ~~~~~~~~~~---~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l   82 (242)
                      -...+|.|+|   ++||+++|+.+|+|+|||+++||||||+|+|.+.+.++ .++.+||++|++|++++++|..+|++.+
T Consensus         6 ~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~KI~~i~~~i~~~~aG~~aD~~~l   84 (244)
T 1ryp_G            6 LSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLV-PQKNVKIQVVDRHIGCVYSGLIPDGRHL   84 (244)
T ss_dssp             SSTTCCCTTSCCHHHHHHHHHHHTSCCEEEEEETTEEEEEEEEECCCTTBC-TTTSCCCEEETTTEEEEEEECHHHHHHH
T ss_pred             CCcccCCcCCchHHHHhHHHHHHCCCCEEEEEECCEEEEEEecccCCCCcc-ccccCceEEecCCEEEEEcccHHHHHHH
Confidence            3456788885   57999999999999999999999999999999976655 4556999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH--HhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeEEEcc
Q 026175           83 LRNLDELILYDNMWDDGNSLGPKELHSYLTRVM--YNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGF  160 (242)
Q Consensus        83 ~~~lr~~~~~~~~~~~g~~i~~~~la~~l~~~~--~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~aiG~  160 (242)
                      .++++. .++.|+++++++++++.+++++++.+  |++++++|||+|++||+|+|+++|+||++||+|++.+++++|+|+
T Consensus        85 ~~~~~~-~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~aiG~  163 (244)
T 1ryp_G           85 VNRGRE-EAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAATGK  163 (244)
T ss_dssp             HHHHHH-HHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETTEEEEEEECTTSCEEEBSEEEEST
T ss_pred             HHHHHH-HHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccCceEEEEEEEEeCCcCEEEEECCCCCEEEeeEEEECC
Confidence            999998 58899999999999999999999998  667777899999999999999899999999999999999999999


Q ss_pred             chHhhHHHHhhh---cCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcC---CCeEEeCCccccc
Q 026175          161 GNHLARPILRDE---WHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITE---EGTTISQPYALKT  224 (242)
Q Consensus       161 g~~~a~~~Le~~---~~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k---~g~~~~~~~ei~~  224 (242)
                      |+++++++||+.   |+++||++||++++++||+.+.++|..++.+++|++|++   +|++.+.|+++-.
T Consensus       164 gs~~a~~~Le~~~~~~~~~ms~eea~~la~~al~~~~~~d~~s~~~iev~vi~~~~~~g~~~~~~~~~~~  233 (244)
T 1ryp_G          164 GRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVKGDLLQ  233 (244)
T ss_dssp             THHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHGGGGTTSCEEEEEEEEETTTTTTSEEECCTHHHH
T ss_pred             ChHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHHhccCCCCCeEEEEEEEecCCCCeeeeChHHHHH
Confidence            999999999997   999999999999999999999999998999999999998   7898888877644

>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5

Probab=100.00  E-value=2.6e-47  Score=333.70  Aligned_cols=214  Identities=17%  Similarity=0.245  Sum_probs=197.0

Q ss_pred             CccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcC
Q 026175           20 TQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDG   99 (242)
Q Consensus        20 ~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g   99 (242)
                      ...++.+|+|+|||+++||||||+|+|.+.|.++.+++.+||++|++|++++++|..+|++.+.++++. .++.|+++++
T Consensus        68 ~~~~v~~GtT~vgik~~dGVVlAaD~r~t~G~li~~~~~~KI~~I~d~i~~~~aG~~AD~~~l~~~lr~-~~~~y~~~~~  146 (287)
T 3nzj_K           68 CKIKIAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFWETWLGS-QCRLHELREK  146 (287)
T ss_dssp             --------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECEECHHHHHHHHHHHHH-HHHHHHHHHS
T ss_pred             hhhheccCceEEEEEECCEEEEEEccccccCceeecCCcceEEEEcCcEEEEecCCHHHHHHHHHHHHH-HHHHHHHHhC
Confidence            456789999999999999999999999999999999999999999999999999999999999999998 4889999999


Q ss_pred             CCCCHHHHHHHHHHHHHhhcCCCCCcceEEEEEEEE-CCcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhhcCCCCC
Q 026175          100 NSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVK-NGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLS  178 (242)
Q Consensus       100 ~~i~~~~la~~l~~~~~~~r~~~rP~~vs~lvaG~D-~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s  178 (242)
                      ++++++.+++++++.+|.+|.  +||++++||||+| +++|+||++||+|++.+++++|+|+|+.+++++||+.|+++||
T Consensus       147 ~~isv~~la~~ls~~l~~~r~--~p~~v~~lvaG~D~~~gp~Ly~iDp~G~~~~~~~~AiGsgs~~a~~~Le~~y~~dms  224 (287)
T 3nzj_K          147 ERISVAAASKILSNLVYQYKG--AGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLS  224 (287)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTT--SCCCEEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHTSCCTTCC
T ss_pred             CCCCHHHHHHHHHHHHHhhcC--CCceEEEEEEEEcCCCCCEEEEECCCceEEEcCeEEEecchHHHHHHHHHhhcCCCC
Confidence            999999999999999988763  5999999999999 7899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCeEEeCCccccc-ccccccccCCcc
Q 026175          179 YEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALKT-FWGFTAFQNPTA  236 (242)
Q Consensus       179 ~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g~~~~~~~ei~~-~~~~~~~~~~~~  236 (242)
                      ++||++++++||..+.+||..++++++|++|+++|+++++++||+. .|++++-+.+..
T Consensus       225 ~eEAi~la~~aL~~a~~rD~~sg~~i~V~vItkdg~~~l~~~ev~~~l~~~~e~~~~~~  283 (287)
T 3nzj_K          225 VEDALYLGKRSILAAAHRDAYSGGSVNLYHVTEDGWIYHGNHDVGELFWKVKEEEGSFN  283 (287)
T ss_dssp             HHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEEEEEEEHHHHHHHHHHHHCCCT
T ss_pred             HHHHHHHHHHHHHHHHhhCcCCCCceEEEEEeCCCEEEeCHHHHHHHHHHHHHhhcccc
Confidence            9999999999999999999999999999999999999999999988 899998766554

>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2

Probab=100.00  E-value=1.6e-46  Score=324.82  Aligned_cols=206  Identities=15%  Similarity=0.237  Sum_probs=190.7

Q ss_pred             CccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcC
Q 026175           20 TQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDG   99 (242)
Q Consensus        20 ~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g   99 (242)
                      ..+|+++|+|+|||+++||||||+|+|.+.|.++.+++.+|||+|++|++++++|..+|++.+.++++. .++.|++.++
T Consensus        22 ~~kav~~GtTivgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~-~~~~~~~~~~  100 (261)
T 3nzj_H           22 QPKATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGS-NIELHSLYTS  100 (261)
T ss_dssp             --------CCEEEEEETTEEEEEEECCEEETTEEEETTCCCEEEEETTEEEEEEESHHHHHHHHHHHHH-HHHHHHHHHT
T ss_pred             CCcccccCceEEEEEECCEEEEEEcCCcccCCeeccCCcceEEEEcCCEEEEeccCHHHHHHHHHHHHH-HHHHhHHhhC
Confidence            467899999999999999999999999999999999999999999999999999999999999999998 4889999999


Q ss_pred             CCCCHHHHHHHHHHHHHhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhhcCCCCCH
Q 026175          100 NSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSY  179 (242)
Q Consensus       100 ~~i~~~~la~~l~~~~~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~  179 (242)
                      ++++++.+++++++.+|.++   +||++++||||+|+++|+||++||+|++.+++++|+|+|++.++++||+.|+++||+
T Consensus       101 ~~~~v~~~a~~l~~~l~~~~---~~~gv~llvaG~D~~Gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~  177 (261)
T 3nzj_H          101 REPRVVSALQMLKQHLFKYQ---GHIGAYLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTK  177 (261)
T ss_dssp             SCCCHHHHHHHHHHHHHHTT---TCSCEEEEEEEEETTEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCCSSCCH
T ss_pred             CCCCHHHHHHHHHHHHHHhc---CcccEEEEEEEEeCCCCEEEEECCCccEEecCeEEeccchHHHHHHHHHHhccCCCH
Confidence            99999999999999988653   699999999999998999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCC-eEEeCCcccccccccc
Q 026175          180 EDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEG-TTISQPYALKTFWGFT  229 (242)
Q Consensus       180 eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g-~~~~~~~ei~~~~~~~  229 (242)
                      |||++++++||..+.++|..++++++|++|+++| ++.+.++.++..|.+.
T Consensus       178 eEA~~la~~al~~a~~rD~~sg~~iev~vI~kdg~~~~~~~~~~~~~~~~~  228 (261)
T 3nzj_H          178 EEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRNYLTPNVREEK  228 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCCSCEEEEEEETTSCEEEEEEEECCCCCCCC
T ss_pred             HHHHHHHHHHHHHHHhhCCCCCCcEEEEEEECCCcEEEeccccCCCccccc
Confidence            9999999999999999999999999999999999 8999999999999875

>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...

Probab=100.00  E-value=1.4e-46  Score=315.86  Aligned_cols=206  Identities=17%  Similarity=0.235  Sum_probs=195.8

Q ss_pred             ceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 026175           28 TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKEL  107 (242)
Q Consensus        28 ~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~~~l  107 (242)
                      +|+|||+++||||||+|+|.+.|.++.+++.+||++|++|++++++|..+|++.+.+++|. .++.|+++++++++++.+
T Consensus         1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~-~~~~~~~~~~~~~~v~~l   79 (212)
T 1ryp_L            1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGS-QCRLHELREKERISVAAA   79 (212)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHH-HHHHHHHHHSSCCCHHHH
T ss_pred             CcEEEEEeCCEEEEEEcCCcccCCeEecCcccceeeeCCcEEEEccccHHHHHHHHHHHHH-HHHHHHHHcCCCCCHHHH
Confidence            6899999999999999999998899999999999999999999999999999999999998 488899999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCcceEEEEEEEE-CCcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhhcCCCCCHHHHHHHH
Q 026175          108 HSYLTRVMYNRRNKFDPLWNSLVLGGVK-NGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLL  186 (242)
Q Consensus       108 a~~l~~~~~~~r~~~rP~~vs~lvaG~D-~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eeai~l~  186 (242)
                      ++++++.+|.++.  .||+|++||||+| +++|+||++||+|++.+++++|+|+|+++++++||+.|+++||++||++++
T Consensus        80 a~~l~~~~~~~~~--~p~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~la  157 (212)
T 1ryp_L           80 SKILSNLVYQYKG--AGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLG  157 (212)
T ss_dssp             HHHHHHHHHHTTT--SCCCBEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHH
T ss_pred             HHHHHHHHHhhCC--CCceEEEEEEEEeCCCCCEEEEEcCCceeEecCCEEEcCCHHHHHHHHHhhCCCCCCHHHHHHHH
Confidence            9999999987763  4999999999999 679999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccCCCCcEEEEEEcCCCeEEeCCcccccc-cccccccCCcc
Q 026175          187 EKCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALKTF-WGFTAFQNPTA  236 (242)
Q Consensus       187 ~~~l~~~~~~d~~s~~~i~v~ii~k~g~~~~~~~ei~~~-~~~~~~~~~~~  236 (242)
                      ++||+.+.+||..++++++|++|+++|++.++++||+.. |++.+++.+..
T Consensus       158 ~~al~~~~~rd~~s~~~i~v~vi~~~g~~~~~~~ei~~~~~~~~~~~~~~~  208 (212)
T 1ryp_L          158 KRSILAAAHRDAYSGGSVNLYHVTEDGWIYHGNHDVGELFWKVKEEEGSFN  208 (212)
T ss_dssp             HHHHHHHHHHBTTCCSEEEEEEEETTEEEEEEEEEHHHHHHHHHHHHCCCT
T ss_pred             HHHHHHHHHhccccCCceEEEEEcCCceEEECHHHHHHHHHHHHHhhhhhc
Confidence            999999999999999999999999999999999999996 99988877654

>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*

Probab=100.00  E-value=4.1e-47  Score=332.57  Aligned_cols=215  Identities=20%  Similarity=0.154  Sum_probs=195.7

Q ss_pred             hccCCCCCCC---CCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHH
Q 026175            6 AKQGLVGPND---PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQEL   82 (242)
Q Consensus         6 ~~~~~~~~~~---~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l   82 (242)
                      -...+|.|+|   +|||+++|+++|+|+|||+++||||||+|+|.+.+.+ ..++.+|||+|++||+|+++|+.+|++.|
T Consensus        10 ~~~t~fSP~Grl~QvEYA~kAv~~GtT~Vgik~kdGVVlAaD~r~t~gl~-~~~~~~KI~~I~d~i~~~~aG~~aD~~~l   88 (288)
T 3nzj_F           10 LSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLL-VPQKNVKIQVVDRHIGCVYSGLIPDGRHL   88 (288)
T ss_dssp             SSTTCCCTTSCCHHHHHHHHHHHTSCCEEEEEETTEEEEEEEEEECCTTB-CTTCSCCCEEETTTEEEEEEECHHHHHHH
T ss_pred             CCcccCCCCCchHHHHHHHHHHhcCCcEEEEEECCEEEEEEcCCcccCCc-cccccceEEEEcCCEEEEecCcHHHHHHH
Confidence            3456799996   4799999999999999999999999999999997655 45678999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH--HhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeEEEcc
Q 026175           83 LRNLDELILYDNMWDDGNSLGPKELHSYLTRVM--YNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGF  160 (242)
Q Consensus        83 ~~~lr~~~~~~~~~~~g~~i~~~~la~~l~~~~--~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~aiG~  160 (242)
                      ++++|. .++.|+++++++++++.+|++|++.+  |++++++|||+|++||||+|+++|+||++||+|++.+++++|+|+
T Consensus        89 ~~~lr~-e~~~y~~~~~~~i~v~~lA~~l~~~l~~yt~~~~~rP~gv~~lvaG~D~~Gp~Ly~iDp~G~~~~~~~~aiGs  167 (288)
T 3nzj_F           89 VNRGRE-EAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAATGK  167 (288)
T ss_dssp             HHHHHH-HHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETTEEEEEEECTTSCEEEBSEEEEST
T ss_pred             HHHHHH-HHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEEEEeCCCCEEEEECCCCCEEEcCEEEEcC
Confidence            999998 48899999999999999999999998  566667899999999999999899999999999999999999999


Q ss_pred             chHhhHHHHhhh---cCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcC-C--CeEEeCCccc
Q 026175          161 GNHLARPILRDE---WHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITE-E--GTTISQPYAL  222 (242)
Q Consensus       161 g~~~a~~~Le~~---~~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k-~--g~~~~~~~ei  222 (242)
                      |++.++++||+.   |+++|+++||++++++||..+.+++..++.+++|++|++ +  |.+.+-|.++
T Consensus       168 gs~~a~~~Lek~~~~~~~~ms~eEAv~la~~al~~a~~~~~~~~~~iev~vIt~~~~~~~~~~vp~~~  235 (288)
T 3nzj_F          168 GRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVKGDL  235 (288)
T ss_dssp             THHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHGGGGTTSEEEEEEEEEETTTSTTCCEECCHHH
T ss_pred             cHHHHHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEEecCCCceEEECCHHH
Confidence            999999999999   999999999999999999999999888888999999999 3  4554444443

>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K

Probab=100.00  E-value=2.3e-46  Score=312.84  Aligned_cols=198  Identities=17%  Similarity=0.208  Sum_probs=189.5

Q ss_pred             ceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 026175           28 TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKEL  107 (242)
Q Consensus        28 ~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~~~l  107 (242)
                      +|+|||+++||||||+|+|.+.|.++.+++.+||++|++|++++++|..+|++.+.++++. .++.|+++++++++++.+
T Consensus         1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~-~~~~~~~~~~~~~~v~~l   79 (204)
T 1iru_L            1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLAR-QCRIYELRNKERISVAAA   79 (204)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHH-HHHHHHHHHSSCCCHHHH
T ss_pred             CeEEEEEeCCEEEEEEcCCcccCCEEEcCcccceEEcCCCEEEEccCcHHHHHHHHHHHHH-HHHHHHHHHCCCCCHHHH
Confidence            6899999999999999999998899999999999999999999999999999999999998 488999999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhhcCCCCCHHHHHHHHH
Q 026175          108 HSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLE  187 (242)
Q Consensus       108 a~~l~~~~~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eeai~l~~  187 (242)
                      ++++++.+|.+|.  +|++|++||+|+|+++|+||++||+|++.+++++|+|+|+++++++||+.|+++||++||+++++
T Consensus        80 a~~l~~~~~~~r~--~~~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~l~~  157 (204)
T 1iru_L           80 SKLLANMVYQYKG--MGLSMGTMICGWDKRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLAR  157 (204)
T ss_dssp             HHHHHHHHHTTTT--SCCCBEEEEEEECSSSEEEEEEESSSCEEECSEEEESTTHHHHHHHHHTTCCTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHhCC--CCeeEEEEEEEEeCCCCEEEEECCCCcEEEeCCEEEEcCHHHHHHHHhccCCCCCCHHHHHHHHH
Confidence            9999999988763  59999999999998899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcccCCCCcEEEEEEcCCCeEEeCCccccccccc
Q 026175          188 KCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALKTFWGF  228 (242)
Q Consensus       188 ~~l~~~~~~d~~s~~~i~v~ii~k~g~~~~~~~ei~~~~~~  228 (242)
                      +||+.+.+||..++++++|++|+++|++.++++||+.+++-
T Consensus       158 ~al~~~~~rd~~s~~~i~v~vi~~~g~~~l~~~ei~~~~~~  198 (204)
T 1iru_L          158 RAIYQATYRDAYSGGAVNLYHVREDGWIRVSSDNVADLHEK  198 (204)
T ss_dssp             HHHHHHHHHBTTCCSEEEEEEECSSCEEEEEEEEHHHHHHH
T ss_pred             HHHHHHHHhCccCCCceEEEEEeCCceEEeCHHHHHHHHHH
Confidence            99999999999899999999999999999999999887653

>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...

Probab=100.00  E-value=6.4e-46  Score=314.21  Aligned_cols=198  Identities=15%  Similarity=0.239  Sum_probs=190.5

Q ss_pred             ceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 026175           28 TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKEL  107 (242)
Q Consensus        28 ~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~~~l  107 (242)
                      +|+|||+++||||||+|+|.+.+.++.+++.+||++|++|++++++|..+|++.+.+++|. .++.|+++++++++++.+
T Consensus         1 TT~vgi~~~dgVvlaaD~r~t~g~~~~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~~~-~~~~~~~~~~~~~~v~~~   79 (222)
T 1ryp_I            1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGS-NIELHSLYTSREPRVVSA   79 (222)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHH-HHHHHHHHHTSCCCHHHH
T ss_pred             CeEEEEEECCEEEEEEcCCcccCCeeecCCcccEEEecCCEEEEecccHHHHHHHHHHHHH-HHHHHHHHcCCCCCHHHH
Confidence            6899999999999999999998888889999999999999999999999999999999998 488999999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhhcCCCCCHHHHHHHHH
Q 026175          108 HSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLE  187 (242)
Q Consensus       108 a~~l~~~~~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eeai~l~~  187 (242)
                      ++++++.+|.++   |||++++||||+|+++|+||++||+|++.+++++|+|+|+++++++||+.|+++||++||+++++
T Consensus        80 a~~l~~~l~~~~---~p~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la~  156 (222)
T 1ryp_I           80 LQMLKQHLFKYQ---GHIGAYLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLAS  156 (222)
T ss_dssp             HHHHHHHHHHTT---TCSCEEEEEEEEETTEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCCSSCCHHHHHHHHH
T ss_pred             HHHHHHHHhhcC---CCCCeeEEEEEEeCCCCEEEEECCCCCEEecCEEEECCCHHHHHHHHHhhCCCCcCHHHHHHHHH
Confidence            999999988764   79999999999999899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcccCCCCcEEEEEEcCCC-eEEeCCcccccccccc
Q 026175          188 KCMRVLLYRDRSAVNKLQIAKITEEG-TTISQPYALKTFWGFT  229 (242)
Q Consensus       188 ~~l~~~~~~d~~s~~~i~v~ii~k~g-~~~~~~~ei~~~~~~~  229 (242)
                      +||+.+.++|..++++++|++|+++| ++.+.+.+++..|.++
T Consensus       157 ~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~~~~~~~~~~~~~  199 (222)
T 1ryp_I          157 DAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRNYLTPNVREEK  199 (222)
T ss_dssp             HHHHHHHHHCTTCCSCEEEEEEETTSCEEEEEEEECCCCCCCC
T ss_pred             HHHHHHHhccccCCCcEEEEEEECCCCEEEEeceecCCccccc
Confidence            99999999999899999999999999 9999999999999995

>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...

Probab=100.00  E-value=7.2e-47  Score=325.36  Aligned_cols=219  Identities=16%  Similarity=0.194  Sum_probs=201.0

Q ss_pred             hhccCCCCCCC---CCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHH
Q 026175            5 QAKQGLVGPND---PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQE   81 (242)
Q Consensus         5 ~~~~~~~~~~~---~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~   81 (242)
                      |-...+|.|+|   +|||+++|+++|+|+|||+++||||||+|+|.+ +.++.+++.+||++|++|++++++|..+|++.
T Consensus         6 d~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~   84 (250)
T 1ryp_B            6 SFSLTTFSPSGKLGQIDYALTAVKQGVTSLGIKATNGVVIATEKKSS-SPLAMSETLSKVSLLTPDIGAVYSGMGPDYRV   84 (250)
T ss_dssp             CSBSSCBCTTSCBHHHHHHHHHHHTSCCEEEEEETTEEEEEEECCCS-CSSBCGGGCCSSEEEETTEEEEEEECHHHHHH
T ss_pred             cCCceeECCCCccHHHHhHHHHHHcCCcEEEEEECCEEEEEEeccCC-CccccCcccCceEEECCCEEEEeeeCHHHHHH
Confidence            45567899995   679999999999999999999999999999988 89999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH-hhhhcCCCCCHHHHHHHHHHHH--HhhcCCCCCcceEEEEEEEEC-CcEEEEEECCCCceeeeCeEE
Q 026175           82 LLRNLDELILYD-NMWDDGNSLGPKELHSYLTRVM--YNRRNKFDPLWNSLVLGGVKN-GQKYLGMVSMIGVNFEDSHVA  157 (242)
Q Consensus        82 l~~~lr~~~~~~-~~~~~g~~i~~~~la~~l~~~~--~~~r~~~rP~~vs~lvaG~D~-~~p~Ly~idp~G~~~~~~~~a  157 (242)
                      +.++++.. ++. |++.++.+++++.+++.+++.+  ++++.++|||+|++||+|+|+ ++|+||++||+|++.+++++|
T Consensus        85 l~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~a~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~a  163 (250)
T 1ryp_B           85 LVDKSRKV-AHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWKATA  163 (250)
T ss_dssp             HHHHHHHH-HHHTTHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCCEEEEEEEEETTTEEEEEEECTTSCEEEBSEEE
T ss_pred             HHHHHHHH-HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCcccceEEEEEEEEcCCCCcEEEEECCCCCEEeeceeE
Confidence            99999984 777 8888999999999999999887  556556899999999999995 799999999999999999999


Q ss_pred             EccchHhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCC----------------eEEeCCcc
Q 026175          158 TGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEG----------------TTISQPYA  221 (242)
Q Consensus       158 iG~g~~~a~~~Le~~~~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g----------------~~~~~~~e  221 (242)
                      +|+|+++++++||+.|+++||++||++++++||+.+.+++ .++++++|++|++++                ++.++++|
T Consensus       164 iGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~-~sg~~i~v~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~e  242 (250)
T 1ryp_B          164 IGKGSVAAKTFLEKRWNDELELEDAIHIALLTLKESVEGE-FNGDTIELAIIGDENPDLLGYTGIPTDKGPRFRKLTSQE  242 (250)
T ss_dssp             ESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCCSC-CSTTTEEEEEECSCCGGGTSEESCSSCCCCSEEECCHHH
T ss_pred             ecCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhccc-cCCCCEEEEEEEccccccccccccccCCCCCeEECCHHH
Confidence            9999999999999999999999999999999999998875 579999999999862                68889988


Q ss_pred             ccccc
Q 026175          222 LKTFW  226 (242)
Q Consensus       222 i~~~~  226 (242)
                      |+...
T Consensus       243 i~~~l  247 (250)
T 1ryp_B          243 INDRL  247 (250)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87654

>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...

Probab=100.00  E-value=1.3e-45  Score=306.74  Aligned_cols=194  Identities=15%  Similarity=0.311  Sum_probs=182.9

Q ss_pred             CceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCHHH
Q 026175           27 GTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKE  106 (242)
Q Consensus        27 g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~~~  106 (242)
                      |+|+|||+++||||||+|+|.+.+.++.+++.+|||+|++|++++++|..+|++.+.++++. .++.|+++++++++++.
T Consensus         1 Mtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~-~~~~~~~~~~~~~~v~~   79 (198)
T 1ryp_K            1 MDIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQA-NIQLYSIREDYELSPQA   79 (198)
T ss_dssp             CCCEEEEECSSCEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEESHHHHHHHHHHHHH-HHHHHHHHHTSCCCHHH
T ss_pred             CceEEEEEECCEEEEEECCCcccCCEEEecCCCceEEeCCCEEEEeccCHHHHHHHHHHHHH-HHHHHHHhcCCCCCHHH
Confidence            68999999999999999999998888888999999999999999999999999999999998 58899999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCcceEEEEEEEEC--CcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhhcCCCCCHHHHHH
Q 026175          107 LHSYLTRVMYNRRNKFDPLWNSLVLGGVKN--GQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVK  184 (242)
Q Consensus       107 la~~l~~~~~~~r~~~rP~~vs~lvaG~D~--~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eeai~  184 (242)
                      +++++++.+|..+...+||+|++||+|+|+  ++|+||++||+|++.+++++|+|+|+++++++||+.|+++||++||++
T Consensus        80 la~~l~~~l~~~~~~r~p~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~~  159 (198)
T 1ryp_K           80 VSSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLD  159 (198)
T ss_dssp             HHHHHHHHHHHHTTSSSCCCEEEEEEEEETTTTEEEEEEECTTCCEEECSEEECTTHHHHHHHHHHHHCCTTCCHHHHHH
T ss_pred             HHHHHHHHHHHhcccCCCceEEEEEEEEeCCCCCcEEEEECCCCCEEECCEEEEcccHHHHHHHHHhhcCCCCCHHHHHH
Confidence            999999998775322249999999999994  899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcccCCCCcEEEEEEcCCCeEEeCCcc
Q 026175          185 LLEKCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYA  221 (242)
Q Consensus       185 l~~~~l~~~~~~d~~s~~~i~v~ii~k~g~~~~~~~e  221 (242)
                      ++++||..+.++|..++++++|++|+++|++.+++.+
T Consensus       160 l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~~~~  196 (198)
T 1ryp_K          160 LLKLCVQELEKRMPMDFKGVIVKIVDKDGIRQVDDFQ  196 (198)
T ss_dssp             HHHHHHHHHHHHCSBCCCCEEEEEEETTEEEEECCCS
T ss_pred             HHHHHHHHHHHhCccCCCceEEEEEcCCCEEEecccc
Confidence            9999999999999999999999999999999988754

>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L

Probab=100.00  E-value=2.7e-45  Score=308.23  Aligned_cols=194  Identities=22%  Similarity=0.351  Sum_probs=183.2

Q ss_pred             cccc-ccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcC
Q 026175           21 QLPY-VTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDG   99 (242)
Q Consensus        21 ~~a~-~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g   99 (242)
                      ++|+ .+|+|+|||+++||||||+|+|.+.+.++.+++.+||++|++|++++++|..+|++.+.++++. .++.|+++++
T Consensus         2 ~~p~v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~-~~~~~~~~~~   80 (213)
T 1iru_M            2 FSPYVFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEA-RLKMYKHSNN   80 (213)
T ss_dssp             CCSCCCCCCEEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHH-HHHHHHHHHS
T ss_pred             CCCccCCCCcEEEEEeCCEEEEEECCCcccCCEEecCCCCcEEEcCCCEEEEccccHHHHHHHHHHHHH-HHHHHHHhcC
Confidence            4554 5899999999999999999999998888888999999999999999999999999999999998 4889999999


Q ss_pred             CCCCHHHHHHHHHHHHHhhcCCCCCcceEEEEEEEEC-CcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhh------
Q 026175          100 NSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKN-GQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDE------  172 (242)
Q Consensus       100 ~~i~~~~la~~l~~~~~~~r~~~rP~~vs~lvaG~D~-~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~------  172 (242)
                      ++++++.+|++|++.+|++|  +|||+|++||+|+|+ ++|+||++||+|++.+++++|+|+|+++++++||+.      
T Consensus        81 ~~~~v~~la~~l~~~~y~~r--~~P~~v~~lvaG~D~~g~p~Ly~id~~G~~~~~~~~aiGsg~~~a~~~Le~~~~~~~~  158 (213)
T 1iru_M           81 KAMTTGAIAAMLSTILYSRR--FFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNM  158 (213)
T ss_dssp             SCCCHHHHHHHHHHHHHHTT--TSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTTCCSC
T ss_pred             CCCCHHHHHHHHHHHHHhhC--CCCceEEEEEEEEcCCCCEEEEEECCCCCEEECCEEEEeeCHHHHHHHHhhccccccc
Confidence            99999999999999999988  799999999999995 569999999999999999999999999999999999      


Q ss_pred             ---cCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCeEEe
Q 026175          173 ---WHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTIS  217 (242)
Q Consensus       173 ---~~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g~~~~  217 (242)
                         |+++||++||++++++||..+.++|..++++++|++|+++|++..
T Consensus       159 ~~~~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~  206 (213)
T 1iru_M          159 QNVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGIREE  206 (213)
T ss_dssp             SSCCCCCCCHHHHHHHHHHHHHHHHHHBTTSCSEEEEEEEETTEEEEE
T ss_pred             cccCCCCCCHHHHHHHHHHHHHHHHHhCCccCCcEEEEEEcCCCeEEE
Confidence               888999999999999999999999999999999999999997643

>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N

Probab=100.00  E-value=5.1e-45  Score=304.83  Aligned_cols=197  Identities=18%  Similarity=0.263  Sum_probs=187.5

Q ss_pred             ceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 026175           28 TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKEL  107 (242)
Q Consensus        28 ~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~~~l  107 (242)
                      +|+|||+++||||||+|+|.+.+.++.+++.+|||+|++|++++++|..+|++.+.+++|. .++.|+++++++++++.+
T Consensus         1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~-~~~~~~~~~~~~~~v~~l   79 (205)
T 1iru_H            1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTY-QLGFHSIELNEPPLVHTA   79 (205)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHH-HHHHHHHHHTSCCCHHHH
T ss_pred             CcEEEEEeCCEEEEEEcCCcccCcEEecCCcCceEEcCCCEEEEcCccHHHHHHHHHHHHH-HHHHHHHHhCCCCCHHHH
Confidence            6899999999999999999998889999999999999999999999999999999999998 588999999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCcceEEEEEEEEC-CcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhhcCCCCCHHHHHHHH
Q 026175          108 HSYLTRVMYNRRNKFDPLWNSLVLGGVKN-GQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLL  186 (242)
Q Consensus       108 a~~l~~~~~~~r~~~rP~~vs~lvaG~D~-~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eeai~l~  186 (242)
                      ++++++.+|.++   +||++++|++|+|+ ++|+||.+||+|++.+++++++|+|+++++++||+.|+++||++||++++
T Consensus        80 a~~l~~~~~~~~---~p~~~~~lvaG~D~~~gp~ly~~d~~G~~~~~~~~a~Gsgs~~a~~~Le~~~~~~~s~eea~~l~  156 (205)
T 1iru_H           80 ASLFKEMCYRYR---EDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFT  156 (205)
T ss_dssp             HHHHHHHHHHTT---TTCCEEEEEEEEETTTEEEEEEECTTSCCEECSEEEESGGGGGGHHHHHHHCCTTCCHHHHHHHH
T ss_pred             HHHHHHHHHhcC---cCccEEEEEEEEeCCCCCEEEEECCCCcEEecCEEEECCCHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence            999999998776   39999999999996 89999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccCCCCcEEEEEEcCCCe--EEeCCccccccccc
Q 026175          187 EKCMRVLLYRDRSAVNKLQIAKITEEGT--TISQPYALKTFWGF  228 (242)
Q Consensus       187 ~~~l~~~~~~d~~s~~~i~v~ii~k~g~--~~~~~~ei~~~~~~  228 (242)
                      ++||+.+.++|..++++++|++|+++|.  +.++++||+.+++-
T Consensus       157 ~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~l~~~ei~~~~~~  200 (205)
T 1iru_H          157 ANALALAMERDGSSGGVIRLAAIAESGVERQVLLGDQIPKFAVA  200 (205)
T ss_dssp             HHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEECGGGSCCCCCC
T ss_pred             HHHHHHHHHhccccCCcEEEEEEeCCCeEEEEeChHHhhHHHhh
Confidence            9999999999999999999999999985  57999999998864

>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H

Probab=100.00  E-value=2.9e-45  Score=312.53  Aligned_cols=203  Identities=19%  Similarity=0.276  Sum_probs=192.3

Q ss_pred             ceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 026175           28 TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKEL  107 (242)
Q Consensus        28 ~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~~~l  107 (242)
                      +|+|||+++||||||+|+|.+.+.++.+++.+|||+|++|++++++|..+|++.+.++++. .++.|+++++++++++.+
T Consensus         1 TTivgi~~~dgVVlaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~-~~~~~~~~~~~~~~v~~l   79 (234)
T 1iru_I            1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISS-NLELHSLSTGRLPRVVTA   79 (234)
T ss_dssp             CCEEEEEETTEEEEEECCCEESSSBEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHH-HHHHHHHHHCSCCCHHHH
T ss_pred             CeEEEEEeCCEEEEEEcCCcccCceeccCcccceEEecCCEEEEecCcHHHHHHHHHHHHH-HHHHHHHhcCCCCCHHHH
Confidence            6899999999999999999998888888899999999999999999999999999999998 488999999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhhcCCCCCHHHHHHHHH
Q 026175          108 HSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLE  187 (242)
Q Consensus       108 a~~l~~~~~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eeai~l~~  187 (242)
                      ++++++.+|.++   +||++++||||+|+++|+||++||+|++.+++++|+|+|++.++++||+.|+++||++||+++++
T Consensus        80 a~~l~~~l~~~~---~~~~v~llvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la~  156 (234)
T 1iru_I           80 NRMLKQMLFRYR---GYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVS  156 (234)
T ss_dssp             HHHHHHHHHHTT---TCSCEEEEEEEECSSCEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHSCCTTCCHHHHHTHHH
T ss_pred             HHHHHHHHHhcC---CCCceeEEEEEEcCCCCEEEEECCCCCEEecCEEEECCchHHHHHHHHHhccCCCCHHHHHHHHH
Confidence            999999988765   69999999999998899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcccCCCCcEEEEEEcCCCeEEeCCcccccccccc--cccCC
Q 026175          188 KCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALKTFWGFT--AFQNP  234 (242)
Q Consensus       188 ~~l~~~~~~d~~s~~~i~v~ii~k~g~~~~~~~ei~~~~~~~--~~~~~  234 (242)
                      +||+.+.++|..++++++|++|+++|++.+.+++++..|.+.  .|+.|
T Consensus       157 ~al~~a~~~d~~sg~~i~v~vi~k~g~~~~~~~~~~~~~~~~~~~~~~~  205 (234)
T 1iru_I          157 EAIAAGIFNDLGSGSNIDLCVISKNKLDFLRPYTVPNKKGTRLGRYRCE  205 (234)
T ss_dssp             HHHHHHHHHCTTCCSCEEEEEEETTEEECCSEEECCCCCCCCCSCCCCC
T ss_pred             HHHHHHHHhcccCCCCEEEEEEECCcEEEEcceecCccccccccCcccC
Confidence            999999999998999999999999999999999999999994  44444

>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...

Probab=100.00  E-value=3.8e-45  Score=305.68  Aligned_cols=193  Identities=17%  Similarity=0.256  Sum_probs=183.3

Q ss_pred             CccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcC
Q 026175           20 TQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDG   99 (242)
Q Consensus        20 ~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g   99 (242)
                      .++|+++|+|+|||+++||||||+|+|.+.+.++.+++.+||++|++|++++++|..+|++.+.+++|. .++.|+++++
T Consensus         2 ~~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~-~~~~~~~~~~   80 (205)
T 1ryp_H            2 KKGEVSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQY-HLELYTSQYG   80 (205)
T ss_dssp             CTTCCBCCCCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEEBHHHHHHHHHHHHH-HHHHHHHHHS
T ss_pred             CCCCCcCCceEEEEEeCCEEEEEEcCCcccCcEEEcCCcCceEEcCCCEEEEccCCHHHHHHHHHHHHH-HHHHHHHHhC
Confidence            578999999999999999999999999998889999999999999999999999999999999999998 5889999999


Q ss_pred             CCCCHHHHHHHHHHHHHhhcCCCCCcceEEEEEEEEC-CcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhhcCCCCC
Q 026175          100 NSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKN-GQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLS  178 (242)
Q Consensus       100 ~~i~~~~la~~l~~~~~~~r~~~rP~~vs~lvaG~D~-~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s  178 (242)
                      + ++++.+++++++.+|.+|.  + |++++||+|+|+ ++|+||++||+|++.+++++|+|+|+++++++||+.|+++||
T Consensus        81 ~-~~v~~la~~l~~~~~~~~~--~-~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s  156 (205)
T 1ryp_H           81 T-PSTETAASVFKELCYENKD--N-LTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMS  156 (205)
T ss_dssp             S-CCHHHHHHHHHHHHHHTTT--T-CCEEEEEEEEETTTEEEEEEECTTSCCEEESEEEESGGGGGGHHHHHHHCCTTCC
T ss_pred             C-CCHHHHHHHHHHHHHhhhc--C-ceEEEEEEEEecCCCcEEEEECCCccEEecCEEEEEecHHHHHHHHHhccCCCCC
Confidence            9 9999999999999988764  2 999999999995 799999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCeEEe
Q 026175          179 YEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTIS  217 (242)
Q Consensus       179 ~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g~~~~  217 (242)
                      ++||++++++||+.+.++|..++++++|++|+++|++..
T Consensus       157 ~eea~~l~~~al~~a~~~d~~sg~~i~v~vi~~~g~~~~  195 (205)
T 1ryp_H          157 KEETVDFIKHSLSQAIKWDGSSGGVIRMVVLTAAGVERL  195 (205)
T ss_dssp             HHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHhCCccCCeEEEEEEcCCCEEEE
Confidence            999999999999999999999999999999999997654

>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...

Probab=100.00  E-value=7.4e-45  Score=307.65  Aligned_cols=194  Identities=18%  Similarity=0.262  Sum_probs=183.0

Q ss_pred             ccc-cccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcC
Q 026175           21 QLP-YVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDG   99 (242)
Q Consensus        21 ~~a-~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g   99 (242)
                      ++| +.+|+|+|||+++||||||+|+|.+.+.++.+++.+|||+|++|++++++|..+|++.|.++++. .++.|+++++
T Consensus         2 ~~p~v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~-~~~~~~~~~~   80 (222)
T 1ryp_M            2 FNPYGDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKN-SVKWYHFDHN   80 (222)
T ss_dssp             CCCCCCCCCEEEEEECSSCEEEEEECCEEETTEEEESCCCCCEEEETTEEEEEEESHHHHHHHHHHHHH-HHHHHHHHTT
T ss_pred             CCccccCCccEEEEEeCCEEEEEEecccccCCEecCCCcCcEEEeCCCEEEEccccHHHHHHHHHHHHH-HHHHHHHHcC
Confidence            344 45899999999999999999999998888889999999999999999999999999999999998 5889999999


Q ss_pred             -CCCCHHHHHHHHHHHHHhhcCCCCCcceEEEEEEEEC-CcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhh-----
Q 026175          100 -NSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKN-GQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDE-----  172 (242)
Q Consensus       100 -~~i~~~~la~~l~~~~~~~r~~~rP~~vs~lvaG~D~-~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~-----  172 (242)
                       ++++++.+|+++++.+|++|  ++||+|++||+|+|+ ++|+||++||+|++.+++++|+|+|+.+++++||+.     
T Consensus        81 ~~~~~v~~la~~l~~~ly~~r--~~P~~v~~ivaG~D~~g~p~Ly~~dp~G~~~~~~~~a~Gsg~~~a~~~Le~~~~~~~  158 (222)
T 1ryp_M           81 DKKLSINSAARNIQHLLYGKR--FFPYYVHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKN  158 (222)
T ss_dssp             TCCCCHHHHHHHHHHHHHTTT--TSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTSCTT
T ss_pred             CCCCCHHHHHHHHHHHHHhcC--CCCceEEEEEEEEcCCCCeEEEEECCCcCEEecCEEEEcCcHHHHHHHHhccccccc
Confidence             99999999999999999987  689999999999994 569999999999999999999999999999999998     


Q ss_pred             ------------cCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCeEEe
Q 026175          173 ------------WHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTIS  217 (242)
Q Consensus       173 ------------~~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g~~~~  217 (242)
                                  |+++||+|||++++++||..+.++|..++++++|++|+++|++..
T Consensus       159 ~~~~~~~~~~~~~~~~~s~eeA~~la~~al~~a~~rd~~sg~~i~v~vi~~~g~~~~  215 (222)
T 1ryp_M          159 QYEPGTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLEILIVTKDGVRKE  215 (222)
T ss_dssp             CBCTTSTTCSBCCCCCCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEEE
T ss_pred             ccccccccccccCCCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEcCCCeEEE
Confidence                        789999999999999999999999999999999999999997643

>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D

Probab=100.00  E-value=8.6e-46  Score=318.05  Aligned_cols=204  Identities=17%  Similarity=0.211  Sum_probs=182.5

Q ss_pred             CCCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHh
Q 026175           15 DPIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDN   94 (242)
Q Consensus        15 ~~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~   94 (242)
                      .++||+++|+++|+|+|||+++||||||+|+|        +++.+|||+|++||+|+++|+.+|++.|.+.++.. ++.|
T Consensus        15 ~r~EYA~~av~~GtT~vgi~~kdgVVlaadkr--------~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~-~~l~   85 (248)
T 3mi0_A           15 ERSELARKGIARAKSVVALAYAGGVLFVAENP--------SRSLQKISELYDRVGFAAAGKFNEFDNLRRGGIQF-ADTR   85 (248)
T ss_dssp             HHHHHHHHHHHTSCCEEEEEETTEEEEEEECC--------CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHH-HHHH
T ss_pred             cchHHHHHHHhCCCcEEEEEeCCEEEEEEeCC--------CCCCCCeEEECCCEEEEEccCHHHHHHHHHHHHHH-HHHH
Confidence            46799999999999999999999999999999        24889999999999999999999999999999874 7888


Q ss_pred             hhhcC-CCCCHHHHHHHHHHHH---HhhcCCCCCcceEEEEEEEEC----CcEEEEEECCCCceee-eCeEEEccchHhh
Q 026175           95 MWDDG-NSLGPKELHSYLTRVM---YNRRNKFDPLWNSLVLGGVKN----GQKYLGMVSMIGVNFE-DSHVATGFGNHLA  165 (242)
Q Consensus        95 ~~~~g-~~i~~~~la~~l~~~~---~~~r~~~rP~~vs~lvaG~D~----~~p~Ly~idp~G~~~~-~~~~aiG~g~~~a  165 (242)
                      +++++ .+++++.|++++++.+   |++  ++|||+|++||+|||+    ++|+||++||+|++.+ ++++|+|+|++.+
T Consensus        86 ~~~~~~~~i~v~~la~~l~~~l~q~yt~--~~rP~gv~~liaG~D~~~~~~gp~Ly~~Dp~G~~~~e~~~~a~Gsgs~~a  163 (248)
T 3mi0_A           86 GYAYDRRDVTGRQLANVYAQTLGTIFTE--QAKPYEVELCVAEVAHYGETKRPELYRITYDGSIADEPHFVVMGGTTEPI  163 (248)
T ss_dssp             HHHSCGGGCCHHHHHHHHHHHHHHHHHH--SSSCCCEEEEEEECCCTTCCCCCEEEEECTTSCEEEESSEEEESSCHHHH
T ss_pred             HHhcCCCCCCHHHHHHHHHHHHHHHhcc--CCCCceEEEEEEEEcCCCCCCCCEEEEECCCeEEeecccEEEECccHHHH
Confidence            89999 8999999999999554   666  3799999999999997    8999999999999994 9999999999999


Q ss_pred             HHHHhhhcCCCCCHHHHHHHHHHHHHHHH-------hcccCCCCcEEEEEEcCCC----eEEeCCccccccccccc
Q 026175          166 RPILRDEWHENLSYEDGVKLLEKCMRVLL-------YRDRSAVNKLQIAKITEEG----TTISQPYALKTFWGFTA  230 (242)
Q Consensus       166 ~~~Le~~~~~~~s~eeai~l~~~~l~~~~-------~~d~~s~~~i~v~ii~k~g----~~~~~~~ei~~~~~~~~  230 (242)
                      +++||++|+++|+++||++++++||+.+.       ++ ..++++++|++|+++|    +++++++||+.+.+-.+
T Consensus       164 ~~~Le~~y~~~mt~eeai~la~~aL~~~~~~~~~~~~~-~~~~~~iev~vv~~~g~~~~f~~l~~~ei~~~l~~~~  238 (248)
T 3mi0_A          164 ANALKESYAENASLTDALRIAVAALRAGSADTSGGDQP-TLGVASLEVAVLDANRPRRAFRRITGSALQALLVDQE  238 (248)
T ss_dssp             HHHHHHHCCTTCCHHHHHHHHHHHHHHC-------------CCTTEEEEEEETTSSSCCEEECCHHHHHHTC----
T ss_pred             HHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcccCccc-ccCCCcEEEEEEECCCCcccEEECCHHHHHHHHHHcC
Confidence            99999999999999999999999999998       44 4778899999999997    89999999999877543

>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J

Probab=100.00  E-value=1e-44  Score=302.16  Aligned_cols=192  Identities=19%  Similarity=0.235  Sum_probs=181.0

Q ss_pred             CceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCHHH
Q 026175           27 GTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKE  106 (242)
Q Consensus        27 g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~~~  106 (242)
                      |+|+|||+++||||||+|+|.+.|.++.+++.+||++|++|++++++|..+|++.+.++++. .++.|+++++++++++.
T Consensus         1 Mtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~-~~~~~~~~~~~~~~v~~   79 (201)
T 1iru_K            1 MEYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQK-NVQLYKMRNGYELSPTA   79 (201)
T ss_dssp             CCCEEEEECSSEEEEEEECCEEETTEEEESSCCCEEECSSSEEEEEEESTTHHHHHHHHHHH-HHHHHHHHHSSCCCHHH
T ss_pred             CceEEEEEeCCEEEEEEcCccccCcEEEccCcceEEEecCCEEEEeCcCHHHHHHHHHHHHH-HHHHHHHHcCCCCCHHH
Confidence            68999999999999999999998899999999999999999999999999999999999998 58899999999999999


Q ss_pred             HHHHHHHHH-HhhcCCCCCcceEEEEEEEEC-CcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhhcCCCCCHHHHHH
Q 026175          107 LHSYLTRVM-YNRRNKFDPLWNSLVLGGVKN-GQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVK  184 (242)
Q Consensus       107 la~~l~~~~-~~~r~~~rP~~vs~lvaG~D~-~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eeai~  184 (242)
                      +++++++.+ |..+. .|||+|++||+|+|+ ++|+||++||+|++.+++++|+|+|+++++++||+.|+++||++||++
T Consensus        80 ~a~~~~~~l~~~~~~-~~p~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~  158 (201)
T 1iru_K           80 AANFTRRNLADCLRS-RTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVE  158 (201)
T ss_dssp             HHHHHHHHHHHHHTS-SSCCCEEEEEEEEETTTEEEEEEECTTCCEEECSEEEESHHHHHHHHHHHHHCCTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhc-CCCccEEEEEEEEeCCCCeEEEEECCCcCeEECCEEEECCcHHHHHHHHHhcccCCCCHHHHHH
Confidence            999999876 54443 379999999999996 799999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcccCCCCcEEEEEEcCCCeEEeCCc
Q 026175          185 LLEKCMRVLLYRDRSAVNKLQIAKITEEGTTISQPY  220 (242)
Q Consensus       185 l~~~~l~~~~~~d~~s~~~i~v~ii~k~g~~~~~~~  220 (242)
                      ++++||+.+.+||..++++++|++|+++|++.+++.
T Consensus       159 l~~~al~~a~~rd~~sg~~i~v~vi~~~g~~~~~~~  194 (201)
T 1iru_K          159 LLRKCLEELQKRFILNLPTFSVRIIDKNGIHDLDNI  194 (201)
T ss_dssp             HHHHHHHHHHHTBCBCCCCEEEEEEETTEEECCCCB
T ss_pred             HHHHHHHHHHhhccccCCceEEEEEcCCCeEEeecc
Confidence            999999999999999999999999999999887653

>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N

Probab=100.00  E-value=1.3e-44  Score=300.94  Aligned_cols=194  Identities=15%  Similarity=0.229  Sum_probs=182.4

Q ss_pred             ceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 026175           28 TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKEL  107 (242)
Q Consensus        28 ~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~~~l  107 (242)
                      ||+|||+++||||||+|+|.+.+.++.+++.+|||+|++|++++++|..+|++.+.+++|. .++.|+++++++++++.+
T Consensus         1 TT~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~-~~~~~~~~~~~~~~v~~~   79 (199)
T 3unf_N            1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAY-QLELHGLELEEPPLVLAA   79 (199)
T ss_dssp             CEEEEEECSSCEEEEECCCEEETTEEEESSCCCEEEEETTEEEEECSCHHHHHHHHHHHHH-HHHHHHHHTTSCCCHHHH
T ss_pred             CeEEEEEeCCeEEEEECCcccCCceeEccccCceEEcCCCEEEEecccHHHHHHHHHHHHH-HHHHHHHHhCCCCCHHHH
Confidence            6999999999999999999998889999999999999999999999999999999999998 488999999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCcceEEEEEEEEC-CcEEEEEECCCCceeeeC-eEEEccchHhhHHHHhhhcCCCCCHHHHHHH
Q 026175          108 HSYLTRVMYNRRNKFDPLWNSLVLGGVKN-GQKYLGMVSMIGVNFEDS-HVATGFGNHLARPILRDEWHENLSYEDGVKL  185 (242)
Q Consensus       108 a~~l~~~~~~~r~~~rP~~vs~lvaG~D~-~~p~Ly~idp~G~~~~~~-~~aiG~g~~~a~~~Le~~~~~~~s~eeai~l  185 (242)
                      ++++++.+|.+|   |||+|++||||+|+ ++|+||+  |+|++.++. +.++|+|+++++++||+.|+++||++||+++
T Consensus        80 a~~l~~~l~~~~---~p~~v~~lvaG~D~~~~p~ly~--p~G~~~~~~~~~~~Gsgs~~a~~~Le~~~~~~ms~eea~~l  154 (199)
T 3unf_N           80 ANVVKNISYKYR---EDLLAHLIVAGWDQREGGQVYG--TMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRF  154 (199)
T ss_dssp             HHHHHHHHHHTT---TTCCCCEEEEEEETTTEEEEEE--CGGGCCEECSEEEEEGGGGGGHHHHHHHCCSSCCHHHHHHH
T ss_pred             HHHHHHHHHhcC---CCceEEEEEEEEeCCCCcEEEE--ECCCceecCCEEEEccCHHHHHHHHHhhcCCCCCHHHHHHH
Confidence            999999998764   69999999999996 7999999  999976655 5567999999999999999999999999999


Q ss_pred             HHHHHHHHHhcccCCCCcEEEEEEcCCC--eEEeCCcccccccc
Q 026175          186 LEKCMRVLLYRDRSAVNKLQIAKITEEG--TTISQPYALKTFWG  227 (242)
Q Consensus       186 ~~~~l~~~~~~d~~s~~~i~v~ii~k~g--~~~~~~~ei~~~~~  227 (242)
                      +++||+.+.++|..++++++|++|+++|  ++.++++||+.+|+
T Consensus       155 a~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~l~~~ei~~~~~  198 (199)
T 3unf_N          155 TTNAITLAMNRDGSSGGVIYLVTITAAGVDHRVILGDELPKFYD  198 (199)
T ss_dssp             HHHHHHHHHHHCTTCCSCEEEEEECSSCEEEEEECGGGSCCCCC
T ss_pred             HHHHHHHHHHhccccCCCeEEEEEcCCCEEEEEcCcccCccccc
Confidence            9999999999999999999999999999  56799999999986

>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H

Probab=100.00  E-value=5e-45  Score=320.19  Aligned_cols=207  Identities=19%  Similarity=0.184  Sum_probs=191.7

Q ss_pred             CccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcC
Q 026175           20 TQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDG   99 (242)
Q Consensus        20 ~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g   99 (242)
                      +++|+.+|+|+|||+++||||||+|+|.+.|+++.+++.+|||+|++|++++++|..+|++.|+++++. +++.|+++++
T Consensus        58 a~~Av~~GtTiVgIk~kdGVVlAaD~r~t~G~li~~~~~~KI~~I~~~i~~~~aG~~aD~~~l~~~~r~-~~~~y~~~~g  136 (294)
T 1q5r_H           58 SGDLAPHGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEYSAAGIAGTAGIAIELVRLFAV-ELEHYEKIEG  136 (294)
T ss_dssp             --CCSCBCCCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEEBHHHHHHHHHHHHH-HHHHHHHHHS
T ss_pred             HHHHHhcCceEEEEEECCEEEEEEcCccccCceeecCCcceEEEECCcEEEEEeecHHHHHHHHHHHHH-HHHHhhHhhC
Confidence            678899999999999999999999999998899999999999999999999999999999999999998 5889999999


Q ss_pred             CCCCHHHHHHHHHHHHHhhcC-CCCCcceEEEEEEEECC-c-----EEEEEECCCCceeee--CeEEEccchHhhHHHHh
Q 026175          100 NSLGPKELHSYLTRVMYNRRN-KFDPLWNSLVLGGVKNG-Q-----KYLGMVSMIGVNFED--SHVATGFGNHLARPILR  170 (242)
Q Consensus       100 ~~i~~~~la~~l~~~~~~~r~-~~rP~~vs~lvaG~D~~-~-----p~Ly~idp~G~~~~~--~~~aiG~g~~~a~~~Le  170 (242)
                      ++++++.+++.|++.++.++. .+|||+|++||+|+|++ +     |+||++||+|++.++  +++|+|+|+.+++++||
T Consensus       137 ~~isv~~la~~la~~l~~~~~~~~rp~~v~lLvaG~D~~~g~~~~~p~Ly~iDp~G~~~e~~~~~~AiGsgs~~a~~~Le  216 (294)
T 1q5r_H          137 VPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALK  216 (294)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHHTTTTCEEEEEEEECTTCSCTTSCEEEEEECSSSCEEECCSSEEEESTTHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHhhhcCCcceEEEEEEEeCCCCcCCCCCEEEEECCCCeEEecCCCeEEEecCcHHHHHHHH
Confidence            999999999999999865421 27999999999999964 6     999999999999998  89999999999999999


Q ss_pred             hhcCCCCCHHHHHHHHHHHHHHHHhcccCCCCc--E-----EEEEEcCCCeEEeCCcccccccc
Q 026175          171 DEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNK--L-----QIAKITEEGTTISQPYALKTFWG  227 (242)
Q Consensus       171 ~~~~~~~s~eeai~l~~~~l~~~~~~d~~s~~~--i-----~v~ii~k~g~~~~~~~ei~~~~~  227 (242)
                      +.|+++|+++||++++++||+.+.++|..+++.  +     +|++|+++|++.++++||+.+++
T Consensus       217 ~~y~~~ms~eEAi~la~~aL~~a~~rD~~sG~~~~ir~i~~ev~vI~~~g~~~l~~~ei~~~l~  280 (294)
T 1q5r_H          217 KIYSPDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAGAVHVSEETTSELAR  280 (294)
T ss_dssp             HHCCSSCCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTEEEECCHHHHHHHHH
T ss_pred             HhccCCCCHHHHHHHHHHHHHHHHhhccccCCchhhcccCCEEEEEECCCEEEcCHHHHHHHHH
Confidence            999999999999999999999999999887653  6     99999999999999999998664

>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I

Probab=100.00  E-value=3.2e-44  Score=300.02  Aligned_cols=189  Identities=20%  Similarity=0.309  Sum_probs=178.6

Q ss_pred             ccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCH
Q 026175           25 VTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGP  104 (242)
Q Consensus        25 ~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~  104 (242)
                      .+|+|+|||+++||||||+|+|.+.+.++.+++.+||++|++|++++++|..+|++.+.++++. .++.|++++++++++
T Consensus         6 ~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~-~~~~~~~~~~~~~~v   84 (205)
T 1iru_J            6 YNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKF-RLNLYELKEGRQIKP   84 (205)
T ss_dssp             SSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECSTTEEEECCSCHHHHHHHHHHHHH-HHHHHHHHSSSCCCH
T ss_pred             CCCCeEEEEEeCCEEEEEECCccccCCeEeecCCccEEEeCCCEEEEccccHHHHHHHHHHHHH-HHHHHHhhcCCCCCH
Confidence            5899999999999999999999998888888899999999999999999999999999999998 488999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCCCcceEEEEEEEEC--CcEEEEEECCCCceeee-CeEEEccchHhhHHHHhhhcCCCCCHHH
Q 026175          105 KELHSYLTRVMYNRRNKFDPLWNSLVLGGVKN--GQKYLGMVSMIGVNFED-SHVATGFGNHLARPILRDEWHENLSYED  181 (242)
Q Consensus       105 ~~la~~l~~~~~~~r~~~rP~~vs~lvaG~D~--~~p~Ly~idp~G~~~~~-~~~aiG~g~~~a~~~Le~~~~~~~s~ee  181 (242)
                      +.+|+++++.+|++|.  .||+|++||+|+|+  ++|+||++||+|++.++ +++|+|+|+++++++||+.|+++||++|
T Consensus        85 ~~la~~l~~~~y~~r~--~P~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~ee  162 (205)
T 1iru_J           85 YTLMSMVANLLYEKRF--GPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDH  162 (205)
T ss_dssp             HHHHHHHHHHHHTTTT--SCCSCCCEEEEECTTSCCEEEEEECTTCCEEECSSEEEEETTHHHHHHHHHHHCCSSCCHHH
T ss_pred             HHHHHHHHHHHHHhcC--CCceEEEEEEEEeCCCCCeEEEEECCCCCccccCCeeEeeeCHHHHHHHHhcccCCCCCHHH
Confidence            9999999999999884  59999999999994  89999999999998665 6699999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCeEE
Q 026175          182 GVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTI  216 (242)
Q Consensus       182 ai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g~~~  216 (242)
                      |++++++||+.+.++|..++.+++|++|+++|++.
T Consensus       163 a~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~  197 (205)
T 1iru_J          163 LFETISQAMLNAVDRDAVSGMGVIVHIIEKDKITT  197 (205)
T ss_dssp             HHHHHHHHHHHHGGGBTTSCSCEEEEEEESSBEEE
T ss_pred             HHHHHHHHHHHHHHhCcccCCceEEEEEcCCCEEE
Confidence            99999999999999999999999999999999764

>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...

Probab=100.00  E-value=7.9e-44  Score=297.42  Aligned_cols=189  Identities=20%  Similarity=0.254  Sum_probs=178.3

Q ss_pred             cccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCC
Q 026175           24 YVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLG  103 (242)
Q Consensus        24 ~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~  103 (242)
                      +.+|+|+|||+++||||||+|+|.+.+.++.+++.+||++|+ |++++++|..+|++.+.++++. .++.|+++++++++
T Consensus         5 ~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-~i~~~~aG~~aD~~~l~~~~~~-~~~~~~~~~~~~~~   82 (204)
T 1ryp_J            5 SINGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEMFRY-KTNLYKLKEERAIE   82 (204)
T ss_dssp             GSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEEET-TEEEEEEECHHHHHHHHHHHHH-HHHHHHHHHSSCCC
T ss_pred             CCCCCeEEEEEeCCEEEEEEcCCcccCCEEeeCCcceEEEeC-CEEEEeeEcHHHHHHHHHHHHH-HHHHHhhccCCCCC
Confidence            458999999999999999999999988888888999999999 9999999999999999999998 48899999999999


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcceEEEEEEEEC--CcEEEEEECCCCceeee-CeEEEccchHhhHHHHhhhcCCCCCHH
Q 026175          104 PKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKN--GQKYLGMVSMIGVNFED-SHVATGFGNHLARPILRDEWHENLSYE  180 (242)
Q Consensus       104 ~~~la~~l~~~~~~~r~~~rP~~vs~lvaG~D~--~~p~Ly~idp~G~~~~~-~~~aiG~g~~~a~~~Le~~~~~~~s~e  180 (242)
                      ++.+|+++++.+|++|.  .||+|++||+|+|+  ++|+||++||+|++.++ +++|+|+|+++++++||+.|+++||++
T Consensus        83 v~~la~~l~~~~y~~~~--~P~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~e  160 (204)
T 1ryp_J           83 PETFTQLVSSSLYERRF--GPYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPE  160 (204)
T ss_dssp             HHHHHHHHHHHHHTTTT--SCCCEEEEEEEECTTTCCEEEEEECTTCCEECCSSEEEEETTHHHHHHHHHHHCCSSCCHH
T ss_pred             HHHHHHHHHHHHHHhcC--CCceEEEEEEEEeCCCCceEEEEECCCCCccccCceeEeccCHHHHHHHHhhhcCCCcCHH
Confidence            99999999999999984  49999999999995  88999999999998665 669999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCeEE
Q 026175          181 DGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTI  216 (242)
Q Consensus       181 eai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g~~~  216 (242)
                      ||++++++||..+.++|..++++++|++|+++|+++
T Consensus       161 ea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~  196 (204)
T 1ryp_J          161 DLFETISQALLNAADRDALSGWGAVVYIIKKDEVVK  196 (204)
T ss_dssp             HHHHHHHHHHHHHHTTBTTSCSCEEEEEEESSCEEE
T ss_pred             HHHHHHHHHHHHHHHhCcccCCcEEEEEEcCCCEEE
Confidence            999999999999999999999999999999999764

>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4

Probab=100.00  E-value=3.4e-44  Score=306.11  Aligned_cols=199  Identities=20%  Similarity=0.203  Sum_probs=185.5

Q ss_pred             ceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 026175           28 TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKEL  107 (242)
Q Consensus        28 ~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~~~l  107 (242)
                      +|+|||+++||||||+|+|.+.|+++.+++.+||++|+++++++++|..+|++.|.++++. .++.|+++++++++++.+
T Consensus         1 tT~vgi~~~dgVVlaaD~r~~~g~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~-~~~~~~~~~~~~~~v~~l   79 (235)
T 1q5q_H            1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAV-ELEHYEKIEGVPLTFDGK   79 (235)
T ss_dssp             CCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHH-HHHHHHHHHSSCCCHHHH
T ss_pred             CeEEEEEECCEEEEEECCCCCcCCEEecCCcCcEEEeCCcEEEEcCCcHHHHHHHHHHHHH-HHHHhHHHhCCCCCHHHH
Confidence            6899999999999999999998899999999999999999999999999999999999998 488999999999999999


Q ss_pred             HHHHHHHHHhhcC-CCCCcceEEEEEEEECC-c-----EEEEEECCCCceeee--CeEEEccchHhhHHHHhhhcCCCCC
Q 026175          108 HSYLTRVMYNRRN-KFDPLWNSLVLGGVKNG-Q-----KYLGMVSMIGVNFED--SHVATGFGNHLARPILRDEWHENLS  178 (242)
Q Consensus       108 a~~l~~~~~~~r~-~~rP~~vs~lvaG~D~~-~-----p~Ly~idp~G~~~~~--~~~aiG~g~~~a~~~Le~~~~~~~s  178 (242)
                      ++.|++.++..+. .+|||+|++||||+|++ +     |+||++||+|++.++  +++|+|+|+.+++++||+.|+++||
T Consensus        80 a~~l~~~~~~~~~~~~rp~~v~~lvaG~D~~~g~~~~~p~Ly~idp~G~~~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms  159 (235)
T 1q5q_H           80 ANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSD  159 (235)
T ss_dssp             HHHHHHHHHTTHHHHTTTCCEEEEEEEECTTCSSTTSCEEEEEECTTSCEEECCSSEEEESTTHHHHHHHHHHHCCTTCC
T ss_pred             HHHHHHHHHHHHHhhhcccceEEEEEEEECCCCccCCCCEEEEECCCCceEEeCCCeEEECCCHHHHHHHHHhhcCCCCC
Confidence            9999999876421 27999999999999964 7     999999999999999  9999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcccCCCCc--E-----EEEEEcCCCeEEeCCcccccccc
Q 026175          179 YEDGVKLLEKCMRVLLYRDRSAVNK--L-----QIAKITEEGTTISQPYALKTFWG  227 (242)
Q Consensus       179 ~eeai~l~~~~l~~~~~~d~~s~~~--i-----~v~ii~k~g~~~~~~~ei~~~~~  227 (242)
                      ++||++++++||..+.++|..+++.  +     +|++|+++|++.++++|++.+++
T Consensus       160 ~eeA~~la~~al~~a~~~d~~sg~~~~i~~~~~ev~vi~~~g~~~l~~~ei~~~~~  215 (235)
T 1q5q_H          160 EETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAGAVHVSEETTSELAR  215 (235)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTEEEECCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhCcccCCcccccccccEEEEEeCCCeEEeCHHHHHHHHH
Confidence            9999999999999999999887753  2     99999999999999999998665

>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A

Probab=100.00  E-value=7.8e-45  Score=314.21  Aligned_cols=202  Identities=17%  Similarity=0.200  Sum_probs=184.0

Q ss_pred             CCCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHh
Q 026175           15 DPIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDN   94 (242)
Q Consensus        15 ~~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~   94 (242)
                      .++||+++|+++|+|+|||+++||||||+|+|        +++.+|||+|++||+|+++|+.+|++.|+++++. .++.|
T Consensus        15 ~qvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r--------s~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~-~~~~~   85 (259)
T 1q5q_A           15 DRSELARKGIARGRSVVVLTFRDGVLFVAENP--------STALHKVSELYDRLGFAAVGKYNEFENLRRAGIV-HADMR   85 (259)
T ss_dssp             HHHHHHHHHHHTSCCEEEEECSSEEEEEECCS--------CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHH-HHHHH
T ss_pred             HHHHHHHHHHhcCCcEEEEEeCCEEEEEEecC--------CCCcCcEEEeCCCEEEEEccCHHHHHHHHHHHHH-HHHHH
Confidence            36899999999999999999999999999999        2588999999999999999999999999999987 47888


Q ss_pred             hhhcC-CCCCHHHHHHHHHHH---HHhhcCCCCCcceEEEEEEEE----CCcEEEEEECCCCcee-eeCeEEEccchHhh
Q 026175           95 MWDDG-NSLGPKELHSYLTRV---MYNRRNKFDPLWNSLVLGGVK----NGQKYLGMVSMIGVNF-EDSHVATGFGNHLA  165 (242)
Q Consensus        95 ~~~~g-~~i~~~~la~~l~~~---~~~~r~~~rP~~vs~lvaG~D----~~~p~Ly~idp~G~~~-~~~~~aiG~g~~~a  165 (242)
                      ++.++ ++++++.+++++++.   .|+.+  +|||+|++||||+|    +++|+||++||+|++. +++++|+|+|++.+
T Consensus        86 ~~~~~~~~i~v~~la~~l~~~l~q~yt~~--~rP~~v~~lvaG~D~~~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a  163 (259)
T 1q5q_A           86 GYSYDRRDVTGRSLANAYAQTLGTIFTEQ--PKPYEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQHFVVMGGTTEPI  163 (259)
T ss_dssp             HHHSCGGGCCHHHHHHHHHHHHHHHHHHS--SSCCCEEEEEEECCCSSCCCCCEEEEEETTSCEEEESSEEEESSSHHHH
T ss_pred             HHHcCCcCCCHHHHHHHHHHHHHHHhccC--CCCceEEEEEEEEcccCCCCCCEEEEECCCCceeeCCCEEEECCChHHH
Confidence            88877 599999999999995   37643  79999999999999    7899999999999999 78999999999999


Q ss_pred             HHHHhhhcCCCCCHHHHHHHHHHHHHHHH-----hcccCCCCcEEEEEEcCC----CeEEeCCccccccccc
Q 026175          166 RPILRDEWHENLSYEDGVKLLEKCMRVLL-----YRDRSAVNKLQIAKITEE----GTTISQPYALKTFWGF  228 (242)
Q Consensus       166 ~~~Le~~~~~~~s~eeai~l~~~~l~~~~-----~~d~~s~~~i~v~ii~k~----g~~~~~~~ei~~~~~~  228 (242)
                      +++||+.|+++|+++||++++++||..+.     ++|. ++.+++|++|+++    +++.++++||+....-
T Consensus       164 ~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~~~rd~-sg~~iev~vi~~~~~~~~~~~l~~~ei~~~~~~  234 (259)
T 1q5q_A          164 ATAMRESYRADLDLEAAVGIAVNALRQGGAGEGEKRNV-DVASLEVAVLDQSRPRRAFRRIAGTALEQLVPA  234 (259)
T ss_dssp             HHHHHHHCCTTCCHHHHHHHHHHHHTTCC--------C-CSSCSEEEEEETTSSSCCEEECCHHHHHTTSCC
T ss_pred             HHHHHhhccCCCCHHHHHHHHHHHHHHHhhcccccccC-CCCcEEEEEEECCCCcCCeEECCHHHHHHHHHH
Confidence            99999999999999999999999999998     8887 8999999999998    6999999999887653

>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H

Probab=100.00  E-value=3.9e-44  Score=314.24  Aligned_cols=210  Identities=17%  Similarity=0.154  Sum_probs=170.0

Q ss_pred             CccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhh
Q 026175           17 IQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMW   96 (242)
Q Consensus        17 ~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~   96 (242)
                      ++|++. +.+|+|+|||+++||||||+|+|.+.+.++.+++.+|||+|++|++|+++|..+|++.|.++++. +++.|++
T Consensus        48 ~~ya~~-v~~GtTiVgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~-~~~~y~~  125 (291)
T 2jay_A           48 AGGDAQ-LPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAV-ELEHYEK  125 (291)
T ss_dssp             -----------CCEEEEEETTEEEEEECCC--------CCCCCCEEEEETTEEEEEESCHHHHHHHHHHHHH-HHHHHHH
T ss_pred             cccccc-ccCCcEEEEEEECCEEEEEECCCccCCCeeecCCcccEEEeCCcEEEEEcccHHHHHHHHHHHHH-HHHHhhh
Confidence            468888 89999999999999999999999998888889999999999999999999999999999999998 5889999


Q ss_pred             hcCCCCCHHHHHHHHHHHHHhhc-CCCCCcceEEEEEEEEC-Cc-----EEEEEECCCCcee--eeCeEEEccchHhhHH
Q 026175           97 DDGNSLGPKELHSYLTRVMYNRR-NKFDPLWNSLVLGGVKN-GQ-----KYLGMVSMIGVNF--EDSHVATGFGNHLARP  167 (242)
Q Consensus        97 ~~g~~i~~~~la~~l~~~~~~~r-~~~rP~~vs~lvaG~D~-~~-----p~Ly~idp~G~~~--~~~~~aiG~g~~~a~~  167 (242)
                      .++.+++++.+++.+++.++.++ ..+|||+|++||||+|+ ++     |+||++||+|++.  +++++|+|+|++++++
T Consensus       126 ~~~~~i~v~~la~~la~~l~~~~~~~~rpf~v~~lvaG~D~~g~~~~~~p~Ly~iDp~G~~~e~~~~~~aiGsgs~~a~~  205 (291)
T 2jay_A          126 LEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSLFAKS  205 (291)
T ss_dssp             HHSSCCCHHHHHHHHHHHHHTCHHHHHHTCCCEEEEEEECTTCSCSTTCEEEEEECTTSCEEECSSSEEEESTTHHHHHH
T ss_pred             hcCCCCCHHHHHHHHHHHHHHhhhhhccccceeEEEEEEeCCCCcCCCCCEEEEECCCCcEEecCCCEEEEecCHHHHHH
Confidence            99999999999999999997653 23689999999999995 45     9999999999988  8999999999999999


Q ss_pred             HHhhhcCCCCCHHHHHHHHHHHHHHHHhcccCCCCc--E-----EEEEEcCCCeEEeCCccccccccc
Q 026175          168 ILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNK--L-----QIAKITEEGTTISQPYALKTFWGF  228 (242)
Q Consensus       168 ~Le~~~~~~~s~eeai~l~~~~l~~~~~~d~~s~~~--i-----~v~ii~k~g~~~~~~~ei~~~~~~  228 (242)
                      +||+.|+++||++||++++++||+.+.++|..+++.  +     +|++|+++|++.++++||+..++-
T Consensus       206 ~Le~~~~~~ms~eEAi~la~~aL~~a~~~D~~sg~~e~vr~~~~~v~vi~~dg~~~l~~~ei~~~~~~  273 (291)
T 2jay_A          206 SMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDADGAVDVPESRIAELARA  273 (291)
T ss_dssp             HHHHHGGGCCSHHHHHHHHHHHHHHC----------------CCEEEEEETTEEEECCHHHHHHHHHH
T ss_pred             HHHHhcCCCCCHHHHHHHHHHHHHHHHhhCCCCCCcccccccCCEEEEEECCCeEEcCHHHHHHHHHH
Confidence            999999999999999999999999999999887753  2     699999999999999999986553

>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A

Probab=100.00  E-value=7.9e-36  Score=244.67  Aligned_cols=171  Identities=17%  Similarity=0.197  Sum_probs=149.8

Q ss_pred             ccCceEEEEEeCCEEEEEEcCCcccCce-eeeCCcCeEEEe-cCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCC
Q 026175           25 VTGTSVVALKYKDGILMAADMGGSYGST-IRYKSVERIKPI-GKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSL  102 (242)
Q Consensus        25 ~~g~t~vgi~~~dgVvlaad~r~t~~~l-~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i  102 (242)
                      .+|+|+|||+++||||||+|+|.+.|.+ +.+++.+||++| ++|++++++|..+|++.|.++++. +++.|+   +  .
T Consensus         3 ~~GtTivgi~~~dgVvlaaD~r~t~g~~~i~~~~~~KI~~i~~~~i~~~~aG~~aD~~~l~~~~~~-~~~~y~---g--~   76 (180)
T 2z3b_A            3 FHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEA-KLEEYN---G--N   76 (180)
T ss_dssp             BCCCCEEEEEETTEEEEEECCCEEETTTEEEESCCCCEEEETTTTEEEEECSCHHHHHHHHHHHHH-HHHHTT---T--C
T ss_pred             CCCeEEEEEEECCEEEEEECCCccCCCceEecCCCCcEEEECCCCEEEEeCchHHHHHHHHHHHHH-HHHHhc---C--C
Confidence            6799999999999999999999998888 999999999999 999999999999999999999998 477765   3  2


Q ss_pred             CHHHHHHHHHHHHHhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceee--eCeEEEccchHhhHHHHhhhcCC---CC
Q 026175          103 GPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFE--DSHVATGFGNHLARPILRDEWHE---NL  177 (242)
Q Consensus       103 ~~~~la~~l~~~~~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~--~~~~aiG~g~~~a~~~Le~~~~~---~~  177 (242)
                      .++.++ .+++.+ +++.++|||++++||+    ++|+||++||+|++.+  ++++|+|+|+++++++||+.|++   +|
T Consensus        77 ~~~~~~-~l~~~~-~~~~~~rp~~~~~lva----d~p~ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~~~m  150 (180)
T 2z3b_A           77 LKRAAV-ELAKEW-RSDKVLRKLEAMLIVM----NQDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKKHAGESM  150 (180)
T ss_dssp             HHHHHH-HHHHHH-HHCTTGGGCCCCEEEE----CSSCEEEECTTCCEECCSSSEEEESTTHHHHHHHHHHHHHHHGGGC
T ss_pred             hHHHHH-HHHHHH-HhhhCcCcceEEEEEE----cCCeEEEECCCCcEEEeCCCEEEECCCHHHHHHHHHHhhhccCCCC
Confidence            233333 344443 3444578999999999    3799999999999988  59999999999999999999998   99


Q ss_pred             CHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEc
Q 026175          178 SYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKIT  210 (242)
Q Consensus       178 s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~  210 (242)
                      |.||   ++.+||+.+.+||..++++++|.+|+
T Consensus       151 t~ee---l~~~al~~a~~rd~~sg~~i~v~~i~  180 (180)
T 2z3b_A          151 SASE---IARAALETAGEICVYTNDQIILEELE  180 (180)
T ss_dssp             CHHH---HHHHHHHHHHHHCTTCCSCCEEEEEC
T ss_pred             CHHH---HHHHHHHHHHHhcCccCCeEEEEEEC
Confidence            9999   46799999999999999999999983

>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4

Probab=100.00  E-value=1.8e-35  Score=240.40  Aligned_cols=167  Identities=17%  Similarity=0.190  Sum_probs=148.4

Q ss_pred             ceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEe-cCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCHHH
Q 026175           28 TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPI-GKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKE  106 (242)
Q Consensus        28 ~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~~~  106 (242)
                      ||+|||+++||||||+|+|.+.|.++.+++.+|||+| ++|++++++|..+|++.+.+++|. +++.|+++     .++.
T Consensus         1 tt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~-~~~~~~~~-----~~~~   74 (171)
T 1m4y_A            1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEA-KLREWGGN-----LTKA   74 (171)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHH-HHHHTTTC-----HHHH
T ss_pred             CeEEEEEECCEEEEEECCCcccCCEEEeCCcceEEEeCCCCEEEEeCccHHHHHHHHHHHHH-HHHHhccc-----HHHH
Confidence            6899999999999999999998899999999999999 999999999999999999999998 47776643     2666


Q ss_pred             HHHHHHHHHHhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeC--eEEEccchHhhHHHHhhhcC-CCCCHHHHH
Q 026175          107 LHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDS--HVATGFGNHLARPILRDEWH-ENLSYEDGV  183 (242)
Q Consensus       107 la~~l~~~~~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~--~~aiG~g~~~a~~~Le~~~~-~~~s~eeai  183 (242)
                      ++++.+ .+++++ .+|||++++|++  |  +|+||++||+|++.+++  +.|+|+|+++++++||+.|+ ++||.   +
T Consensus        75 ~~~l~~-~~~~~~-~~~~~~~~~lv~--D--~p~Ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~ms~---~  145 (171)
T 1m4y_A           75 AVELAK-DWRTDR-VLRRLEALLLVA--D--KENIFIISGNGEVIQPDDDAAAIGSGGPYALAAAKALLRNTDLSA---R  145 (171)
T ss_dssp             HHHHHH-HHHHCT-TGGGCCCEEEEE--C--SSCEEEECTTSCEECCSSSEEEESTTHHHHHHHHHHHHHHCCCCH---H
T ss_pred             HHHHHH-HHHHhC-CCCceEEEEEEE--c--CCEEEEECCCCCEEecCCCEEEECCcHHHHHHHHHHhcccCCCCH---H
Confidence            666544 555543 367899999998  5  89999999999999987  99999999999999999999 99996   6


Q ss_pred             HHHHHHHHHHHhcccCCCCcEEEEEE
Q 026175          184 KLLEKCMRVLLYRDRSAVNKLQIAKI  209 (242)
Q Consensus       184 ~l~~~~l~~~~~~d~~s~~~i~v~ii  209 (242)
                      +++++||+.+.+||..++++++|.++
T Consensus       146 ~l~~~al~~a~~rd~~sg~~i~v~~~  171 (171)
T 1m4y_A          146 EIVEKAMTIAGEICIYTNQNIVIEEV  171 (171)
T ss_dssp             HHHHHHHHHHHHHCTTCCSCCEEEEC
T ss_pred             HHHHHHHHHHHHhCcccCCeEEEEEC
Confidence            78999999999999999999999864

>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A

Probab=100.00  E-value=2.9e-35  Score=239.90  Aligned_cols=168  Identities=18%  Similarity=0.170  Sum_probs=149.3

Q ss_pred             ceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEe-cCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCHHH
Q 026175           28 TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPI-GKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKE  106 (242)
Q Consensus        28 ~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~~~  106 (242)
                      +|+|||+++||||||+|+|.+.+.++.+++.+|||+| ++|++++++|..+|++.|.+++|. +++.|++      ++..
T Consensus         1 tT~vgi~~~dgVvlaaD~r~t~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~-~~~~~~~------~~~~   73 (174)
T 1g3k_A            1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFER-KLEMHQG------HLLK   73 (174)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHH-HHHHTTT------CHHH
T ss_pred             CeEEEEEECCEEEEEECCCCccCCeeEeCCCCcEEEECCCCEEEEeCccHHHHHHHHHHHHH-HHHHhcC------cHHH
Confidence            6899999999999999999998889999999999999 999999999999999999999998 4777654      4555


Q ss_pred             HHHHHHHHHHhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeC---eEEEccchHhhHHHHhhhcC-CCCCHHHH
Q 026175          107 LHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDS---HVATGFGNHLARPILRDEWH-ENLSYEDG  182 (242)
Q Consensus       107 la~~l~~~~~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~---~~aiG~g~~~a~~~Le~~~~-~~~s~eea  182 (242)
                      .+..|++.++++|. +||++  ++++|+|  +|+||++||+|++.+++   +.|+|+|+++++++||+.|+ ++||.+  
T Consensus        74 ~~~~l~~~~~~~~~-~r~~~--~~l~g~d--~p~Ly~~d~~G~~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~mt~~--  146 (174)
T 1g3k_A           74 SAVELAKDWRTDRA-LRKLE--AMLIVAD--EKESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALVENTELSAH--  146 (174)
T ss_dssp             HHHHHHHHHHHSTT-GGGCC--CEEEEEC--SSCEEEEETTTEEECCCTTCEEEESTTHHHHHHHHHHHHHHCCCCHH--
T ss_pred             HHHHHHHHHHhccC-cCcce--EEEEEEC--CCEEEEEcCCCcEEecCCCcEEEEcccHHHHHHHHHHhcccCCCCHH--
Confidence            66677776665543 56765  5777787  79999999999999988   99999999999999999999 999955  


Q ss_pred             HHHHHHHHHHHHhcccCCCCcEEEEEEc
Q 026175          183 VKLLEKCMRVLLYRDRSAVNKLQIAKIT  210 (242)
Q Consensus       183 i~l~~~~l~~~~~~d~~s~~~i~v~ii~  210 (242)
                       +++++||+.+.+||..++++++|++|+
T Consensus       147 -~l~~~al~~a~~rd~~sg~~i~v~~i~  173 (174)
T 1g3k_A          147 -EIVEKSLRIAGDICVFTNTNFTIEELP  173 (174)
T ss_dssp             -HHHHHHHHHHHHHCTTCCSCCEEEEEC
T ss_pred             -HHHHHHHHHHHHhccccCCceEEEEec
Confidence             799999999999999999999999996

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	242
d1iru2_	217	d.153.1.4 (2:) Proteasome beta subunit (catalytic)	7e-53
d1ryp2_	233	d.153.1.4 (2:) Proteasome beta subunit (catalytic)	5e-48
d1irui_	220	d.153.1.4 (I:) Proteasome beta subunit (catalytic)	8e-36
d1rypk_	198	d.153.1.4 (K:) Proteasome beta subunit (catalytic)	1e-35
d1rypi_	222	d.153.1.4 (I:) Proteasome beta subunit (catalytic)	1e-34
d1irul_	201	d.153.1.4 (L:) Proteasome beta subunit (catalytic)	3e-32
d1ryp1_	222	d.153.1.4 (1:) Proteasome beta subunit (catalytic)	4e-32
d1iruh_	202	d.153.1.4 (H:) Proteasome beta subunit (catalytic)	7e-32
d1j2qh_	202	d.153.1.4 (H:) Proteasome beta subunit (catalytic)	7e-31
d1iruk_	199	d.153.1.4 (K:) Proteasome beta subunit (catalytic)	9e-31
d1rypl_	212	d.153.1.4 (L:) Proteasome beta subunit (catalytic)	1e-30
d1iruj_	204	d.153.1.4 (J:) Proteasome beta subunit (catalytic)	1e-30
d1ryph_	205	d.153.1.4 (H:) Proteasome beta subunit (catalytic)	3e-30
d1rypc_	244	d.153.1.4 (C:) Proteasome alpha subunit (non-catal	3e-29
d1irue_	234	d.153.1.4 (E:) Proteasome alpha subunit (non-catal	4e-29
d1yarh1	203	d.153.1.4 (H:1-203) Proteasome beta subunit (catal	9e-29
d1j2pa_	243	d.153.1.4 (A:) Proteasome alpha subunit (non-catal	4e-28
d1rypg_	244	d.153.1.4 (G:) Proteasome alpha subunit (non-catal	9e-28
d1rypj_	204	d.153.1.4 (J:) Proteasome beta subunit (catalytic)	1e-27
d1q5qh_	224	d.153.1.4 (H:) Proteasome beta subunit (catalytic)	2e-27
d1rypb_	250	d.153.1.4 (B:) Proteasome alpha subunit (non-catal	3e-27
d1iruc_	250	d.153.1.4 (C:) Proteasome alpha subunit (non-catal	4e-27
d1yara1	221	d.153.1.4 (A:13-233) Proteasome alpha subunit (non	7e-27
d1irub_	233	d.153.1.4 (B:) Proteasome alpha subunit (non-catal	9e-27
d1iru1_	213	d.153.1.4 (1:) Proteasome beta subunit (catalytic)	2e-26
d1irug_	245	d.153.1.4 (G:) Proteasome alpha subunit (non-catal	2e-26
d1rypd_	241	d.153.1.4 (D:) Proteasome alpha subunit (non-catal	7e-26
d1rype_	242	d.153.1.4 (E:) Proteasome alpha subunit (non-catal	1e-24
d1iruf_	238	d.153.1.4 (F:) Proteasome alpha subunit (non-catal	3e-24
d1irud_	243	d.153.1.4 (D:) Proteasome alpha subunit (non-catal	6e-23
d1q5qa_	227	d.153.1.4 (A:) Proteasome alpha subunit (non-catal	9e-23
d1rypa_	243	d.153.1.4 (A:) Proteasome alpha subunit (non-catal	3e-22
d1rypf_	233	d.153.1.4 (F:) Proteasome alpha subunit (non-catal	1e-21
d1m4ya_	171	d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga ma	4e-19
d1irua_	244	d.153.1.4 (A:) Proteasome alpha subunit (non-catal	4e-18
d2z3ba1	180	d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus	8e-18
d1g3ka_	173	d.153.1.4 (A:) HslV (ClpQ) protease {Haemophilus i	2e-15

>d1iru2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 217

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  168 bits (426), Expect = 7e-53
 Identities = 93/211 (44%), Positives = 146/211 (69%), Gaps = 2/211 (0%)

Query: 20  TQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDF 79
           TQ P VTGTSV+ +K++ G+++AADM GSYGS  R++++ RI  +   ++LGASG+ +DF
Sbjct: 1   TQNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADF 60

Query: 80  QELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQK 139
           Q L + L ++++ + +  DG+S  P+ +HS+LTR MY+RR+K +PLWN++V+GG  +G+ 
Sbjct: 61  QYLKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGES 120

Query: 140 YLGMVSMIGVNFEDSHVATGFGNHLARPILRDE--WHENLSYEDGVKLLEKCMRVLLYRD 197
           +LG V M+GV +E   +ATG+G +LA+P+LR+       LS  +   L+E+CMRVL YRD
Sbjct: 121 FLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARDLVERCMRVLYYRD 180

Query: 198 RSAVNKLQIAKITEEGTTISQPYALKTFWGF 228
             + N+ Q A +TE+G  I  P + +T W  
Sbjct: 181 ARSYNRFQTATVTEKGVEIEGPLSTETNWDI 211

>d1ryp2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  156 bits (395), Expect = 5e-48
 Identities = 82/221 (37%), Positives = 130/221 (58%), Gaps = 12/221 (5%)

Query: 20  TQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDF 79
           TQ P VTGTSV+++KY +G+++AAD  GSYGS +R+  VER+ P+G ++++G SG+ISD 
Sbjct: 1   TQQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDM 60

Query: 80  QELLRNLDELI----LYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGV- 134
           Q + R L +L+      + + D   +L P  +  YL  VMY RR+K +PLWN++++ GV 
Sbjct: 61  QHIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQ 120

Query: 135 KNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHE-----NLSYEDGVKLLEKC 189
            NG ++L  V+++GV +    +ATGFG H+A P+LR            + +   + +   
Sbjct: 121 SNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNA 180

Query: 190 MRVLLYRDRSAVNKLQIAKITEE-GTTISQPYALKTF-WGF 228
           MRVL YRD  +     +A I +  G T  +   ++   W F
Sbjct: 181 MRVLYYRDARSSRNFSLAIIDKNTGLTFKKNLQVENMKWDF 221

>d1irui_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 220

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  124 bits (312), Expect = 8e-36
 Identities = 36/201 (17%), Positives = 83/201 (41%), Gaps = 4/201 (1%)

Query: 28  TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLD 87
           T++  + YKDGI++ AD   + G  +  K+  +I  I  +     +G  +D     + + 
Sbjct: 1   TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLIS 60

Query: 88  ELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMI 147
             +   +    G        +  L ++++        +  +LVLGGV     +L  +   
Sbjct: 61  SNL-ELHSLSTGRLPRVVTANRMLKQMLFRY---RGYIGAALVLGGVDVTGPHLYSIYPH 116

Query: 148 GVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIA 207
           G   +  +V  G G+  A  +  D++  ++  E+   L+ + +   ++ D  + + + + 
Sbjct: 117 GSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSEAIAAGIFNDLGSGSNIDLC 176

Query: 208 KITEEGTTISQPYALKTFWGF 228
            I++      +PY +    G 
Sbjct: 177 VISKNKLDFLRPYTVPNKKGT 197

>d1rypk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 198

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  123 bits (309), Expect = 1e-35
 Identities = 31/198 (15%), Positives = 87/198 (43%), Gaps = 3/198 (1%)

Query: 28  TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLD 87
             ++ ++ +D +++A+    + G ++   S ++ + +  H+L+  +GE  D  +    + 
Sbjct: 2   DIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQ 61

Query: 88  ELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGV--KNGQKYLGMVS 145
             I   ++  +   L P+ + S++ + +        P   ++++GG   K  +  L  + 
Sbjct: 62  ANIQLYSI-REDYELSPQAVSSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQID 120

Query: 146 MIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQ 205
            +G   E  + A G+       +L   +  +++ E+G+ LL+ C++ L  R       + 
Sbjct: 121 YLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLDLLKLCVQELEKRMPMDFKGVI 180

Query: 206 IAKITEEGTTISQPYALK 223
           +  + ++G      +  +
Sbjct: 181 VKIVDKDGIRQVDDFQAQ 198

>d1rypi_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 222

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  121 bits (304), Expect = 1e-34
 Identities = 31/203 (15%), Positives = 81/203 (39%), Gaps = 7/203 (3%)

Query: 28  TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLD 87
           T++V +K+ +G+++AAD   + G  +  K+  ++  I        +G  +D + + + + 
Sbjct: 1   TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIG 60

Query: 88  -ELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSM 146
             + L+              + S L  +  +       +   L++ GV     +L  +  
Sbjct: 61  SNIELHSLYTSR-----EPRVVSALQMLKQHLFKYQGHIGAYLIVAGVDPTGSHLFSIHA 115

Query: 147 IGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQI 206
            G      +++ G G+  A  +L   W ++L+ E+ +KL    ++  ++ D  + + + +
Sbjct: 116 HGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDV 175

Query: 207 AKITE-EGTTISQPYALKTFWGF 228
             +   +     + Y        
Sbjct: 176 CVMEIGKDAEYLRNYLTPNVREE 198

>d1irul_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 201

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  114 bits (286), Expect = 3e-32
 Identities = 36/203 (17%), Positives = 77/203 (37%), Gaps = 4/203 (1%)

Query: 28  TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLD 87
           T+ +A K++ G+++AAD   + G+ I  ++V+++  I  + L   +G  +D     R L 
Sbjct: 1   TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLA 60

Query: 88  ELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMI 147
                  +  +   +        L  ++Y    K   L    ++ G       L  V   
Sbjct: 61  RQCRIYEL-RNKERISVAAASKLLANMVYQ--YKGMGLSMGTMICGWDKRGPGLYYVDSE 117

Query: 148 GVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIA 207
           G     +  + G G+  A  ++   +  +L  E    L  + +    YRD  +   + + 
Sbjct: 118 GNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAVNLY 177

Query: 208 KITEEG-TTISQPYALKTFWGFT 229
            + E+G   +S          ++
Sbjct: 178 HVREDGWIRVSSDNVADLHEKYS 200

>d1ryp1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 222

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  114 bits (287), Expect = 4e-32
 Identities = 34/212 (16%), Positives = 81/212 (38%), Gaps = 21/212 (9%)

Query: 23  PYV-TGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQE 81
           PY   G +++ +  +D  ++A D       +I  +   ++   G + ++ A+G  +D   
Sbjct: 4   PYGDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDA 63

Query: 82  LLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGV-KNGQKY 140
           L++     + + +   +   L        +  ++Y +R  F P +   ++ G+ ++G+  
Sbjct: 64  LVKRFKNSVKWYHFDHNDKKLSINSAARNIQHLLYGKR--FFPYYVHTIIAGLDEDGKGA 121

Query: 141 LGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSY-----------------EDGV 183
           +     +G    +   A G    L  P L ++ +    Y                 E+ +
Sbjct: 122 VYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQYEPGTNGKVKKPLKYLSVEEVI 181

Query: 184 KLLEKCMRVLLYRDRSAVNKLQIAKITEEGTT 215
           KL+         R     + L+I  +T++G  
Sbjct: 182 KLVRDSFTSATERHIQVGDGLEILIVTKDGVR 213

>d1iruh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 202

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  113 bits (284), Expect = 7e-32
 Identities = 37/204 (18%), Positives = 80/204 (39%), Gaps = 5/204 (2%)

Query: 28  TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLD 87
           T+++A+++  G+++ AD   + GS I  +  +++ PI        SG  +D Q +   + 
Sbjct: 1   TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAV- 59

Query: 88  ELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMI 147
              L  +  +           S    + Y  R + D +   ++ G        +  V M 
Sbjct: 60  TYQLGFHSIELNEPPLVHTAASLFKEMCY--RYREDLMAGIIIAGWDPQEGGQVYSVPMG 117

Query: 148 GVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIA 207
           G+    S    G G+      +   + E ++ E+ ++     + + + RD S+   +++A
Sbjct: 118 GMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSGGVIRLA 177

Query: 208 KITEEGTT--ISQPYALKTFWGFT 229
            I E G    +     +  F   T
Sbjct: 178 AIAESGVERQVLLGDQIPKFAVAT 201

>d1j2qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 202

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score =  111 bits (277), Expect = 7e-31
 Identities = 42/197 (21%), Positives = 89/197 (45%), Gaps = 4/197 (2%)

Query: 28  TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLD 87
           T+ V L  KDG++MA +   + G+ I  K+ ++I  I     +  +G + D Q L   + 
Sbjct: 1   TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFL-ARII 59

Query: 88  ELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGV-KNGQKYLGMVSM 146
           ++               + + +  + ++ + R  + P    L++GG+   G+    +  +
Sbjct: 60  KIEANLYEIRRERKPTVRAIATLTSNLLNSYR--YFPYLVQLLIGGIDSEGKSIYSIDPI 117

Query: 147 IGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQI 206
            G   E   VATG G+  A  +L D +   +  ++ V+L  + +   + RD ++ + + +
Sbjct: 118 GGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDGIDV 177

Query: 207 AKITEEGTTISQPYALK 223
            KITE+      P  ++
Sbjct: 178 VKITEDEFYQYSPEEVE 194

>d1iruk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 199

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  110 bits (276), Expect = 9e-31
 Identities = 34/197 (17%), Positives = 69/197 (35%), Gaps = 2/197 (1%)

Query: 28  TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLD 87
             ++ ++  D +L+A+D   +          +++  + +  LL   GE  D  +    + 
Sbjct: 2   EYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYI- 60

Query: 88  ELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMI 147
           +  +      +G  L P    ++  R + +      P   +L+L G    +         
Sbjct: 61  QKNVQLYKMRNGYELSPTAAANFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYMDY 120

Query: 148 GVNFEDSH-VATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQI 206
                 +   A G+G  L   IL   +   +S E  V+LL KC+  L  R    +    +
Sbjct: 121 LAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVELLRKCLEELQKRFILNLPTFSV 180

Query: 207 AKITEEGTTISQPYALK 223
             I + G       +  
Sbjct: 181 RIIDKNGIHDLDNISFP 197

>d1rypl_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 212

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  111 bits (277), Expect = 1e-30
 Identities = 34/189 (17%), Positives = 76/189 (40%), Gaps = 2/189 (1%)

Query: 28  TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLD 87
           T+ +A +++ GI++A D   + G+ +  ++V+R+  I    L   +G  +D Q     L 
Sbjct: 1   TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLG 60

Query: 88  ELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMI 147
                  +  +   +        L+ ++Y  +        +++ G  +     +  V   
Sbjct: 61  SQCRLHEL-REKERISVAAASKILSNLVYQYK-GAGLSMGTMICGYTRKEGPTIYYVDSD 118

Query: 148 GVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIA 207
           G   +      G G   A  +L   +  +LS ED + L ++ +    +RD  +   + + 
Sbjct: 119 GTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLY 178

Query: 208 KITEEGTTI 216
            +TE+G   
Sbjct: 179 HVTEDGWIY 187

>d1iruj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 204

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  110 bits (275), Expect = 1e-30
 Identities = 37/193 (19%), Positives = 80/193 (41%), Gaps = 6/193 (3%)

Query: 27  GTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNL 86
           G +V+A+K K+ + +AAD      + +     ++I P+G    +G +G  +D Q + + L
Sbjct: 7   GGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRL 66

Query: 87  DELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGV--KNGQKYLGMV 144
            +  L      +G  + P  L S +  ++Y +R  F P +   V+ G+  K  + ++  +
Sbjct: 67  -KFRLNLYELKEGRQIKPYTLMSMVANLLYEKR--FGPYYTEPVIAGLDPKTFKPFICSL 123

Query: 145 SMIGVNFEDSHVATGF-GNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNK 203
            +IG                    +    W  N+  +   + + + M   + RD  +   
Sbjct: 124 DLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDHLFETISQAMLNAVDRDAVSGMG 183

Query: 204 LQIAKITEEGTTI 216
           + +  I ++  T 
Sbjct: 184 VIVHIIEKDKITT 196

>d1ryph_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 205

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  109 bits (273), Expect = 3e-30
 Identities = 32/190 (16%), Positives = 74/190 (38%), Gaps = 4/190 (2%)

Query: 26  TGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRN 85
            G S++A+ +KDG+++ AD   + G+ I  +  +++  +        SG  +D Q +   
Sbjct: 8   LGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADI 67

Query: 86  LDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVS 145
           +      +       +   +   S    + Y   NK +     +V G     +  +  + 
Sbjct: 68  VQ--YHLELYTSQYGTPSTETAASVFKELCY--ENKDNLTAGIIVAGYDDKNKGEVYTIP 123

Query: 146 MIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQ 205
           + G   +  +   G G+          + EN+S E+ V  ++  +   +  D S+   ++
Sbjct: 124 LGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDGSSGGVIR 183

Query: 206 IAKITEEGTT 215
           +  +T  G  
Sbjct: 184 MVVLTAAGVE 193

>d1rypc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 244

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  107 bits (269), Expect = 3e-29
 Identities = 26/192 (13%), Positives = 68/192 (35%), Gaps = 2/192 (1%)

Query: 26  TGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRN 85
              + + +   DGI++AA+   +     +  S E++  +     +  +G  +D + L+  
Sbjct: 30  HAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINT 89

Query: 86  L-DELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVK-NGQKYLGM 143
                  Y   +++   +          +  Y +     P   S +  G        L  
Sbjct: 90  ARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYT 149

Query: 144 VSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNK 203
            +  G       ++ G     A+ +L+ ++ +++  +D ++L  K +           ++
Sbjct: 150 SNPSGNYTGWKAISVGANTSAAQTLLQMDYKDDMKVDDAIELALKTLSKTTDSSALTYDR 209

Query: 204 LQIAKITEEGTT 215
           L+ A I +    
Sbjct: 210 LEFATIRKGAND 221

>d1irue_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 234

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  107 bits (268), Expect = 4e-29
 Identities = 30/194 (15%), Positives = 78/194 (40%), Gaps = 8/194 (4%)

Query: 26  TGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRN 85
            G++ + ++  +G+ +A +   +    +   S+E+I  I  H     SG I+D + L+  
Sbjct: 26  LGSTAIGIQTSEGVCLAVEKRITSPL-MEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDK 84

Query: 86  L-DELILYDNMWDDGNSLGPK-----ELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQK 139
              E   +   +++  ++         L         +      P   +L+ GGV     
Sbjct: 85  ARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGP 144

Query: 140 YLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRS 199
            L  +   G   +    A G  +  A+  L++ +H++++ ++ +K     ++ ++    +
Sbjct: 145 QLFHMDPSGTFVQCDARAIGSASEGAQSSLQELYHKSMTLKEAIKSSLIILKQVMEEKLN 204

Query: 200 AVNKLQIAKITEEG 213
           A   +++A +    
Sbjct: 205 A-TNIELATVQPGQ 217

>d1yarh1 d.153.1.4 (H:1-203) Proteasome beta subunit (catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 203

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score =  105 bits (263), Expect = 9e-29
 Identities = 36/185 (19%), Positives = 89/185 (48%), Gaps = 4/185 (2%)

Query: 28  TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLD 87
           T+ V +  KD ++MA +   +  + I +K+ +++  I  ++ +  +G + D Q L+R + 
Sbjct: 1   TTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYM- 59

Query: 88  ELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMI 147
           +  L         ++  + + + L+ ++   +  + P    L++GG+        + +  
Sbjct: 60  KAELELYRLQRRVNMPIEAVATLLSNMLNQVK--YMPYMVQLLVGGIDTAPHVFSIDAAG 117

Query: 148 GVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIA 207
           G   ED + +TG G+     +L  ++ E ++ ++GV L+ + +     RD ++   + +A
Sbjct: 118 GS-VEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSASGGMIDVA 176

Query: 208 KITEE 212
            IT +
Sbjct: 177 VITRK 181

>d1j2pa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 243

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score =  105 bits (262), Expect = 4e-28
 Identities = 35/192 (18%), Positives = 73/192 (38%), Gaps = 4/192 (2%)

Query: 26  TGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRN 85
            G + + +K K+G+++ AD        +   ++E+I  I +H     SG ++D + L+  
Sbjct: 30  RGATAIGIKCKEGVILIADKRVGSKL-LEKDTIEKIYKIDEHICAATSGLVADARVLIDR 88

Query: 86  L-DELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMV 144
              E  +    +D   ++          +  Y +     P   SL++ GV      L   
Sbjct: 89  ARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVNE-VPKLYET 147

Query: 145 SMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKL 204
              G   E    A G G          E+ ++LS++D + L    M + +  +      +
Sbjct: 148 DPSGALLEYKATAIGMGRMAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIESELVP-ENI 206

Query: 205 QIAKITEEGTTI 216
           ++  +  +  T 
Sbjct: 207 EVGYVKVDDRTF 218

>d1rypg_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 244

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  104 bits (260), Expect = 9e-28
 Identities = 39/193 (20%), Positives = 74/193 (38%), Gaps = 5/193 (2%)

Query: 26  TGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRN 85
            GT+ + +K  DG++ A +   +    +  +   +I+ + +H     SG I D + L+  
Sbjct: 29  NGTTSIGIKCNDGVVFAVEKLITSKL-LVPQKNVKIQVVDRHIGCVYSGLIPDGRHLVNR 87

Query: 86  L-DELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMV 144
             +E   +  ++     +             +   N   P   S + GGV     +L M+
Sbjct: 88  GREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYML 147

Query: 145 SMIGVNFEDSHVATGFGNHLARPIL---RDEWHENLSYEDGVKLLEKCMRVLLYRDRSAV 201
              G  +     ATG G   A+  L    D   E LS  + VK   K + +    ++   
Sbjct: 148 EPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKD 207

Query: 202 NKLQIAKITEEGT 214
            +L+I+  +   T
Sbjct: 208 FELEISWCSLSET 220

>d1rypj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 204

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  102 bits (255), Expect = 1e-27
 Identities = 40/197 (20%), Positives = 74/197 (37%), Gaps = 8/197 (4%)

Query: 23  PYV-TGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQE 81
           P    G  VVA+  KD + +A D+     S       E+I   G H  LG +G  +D   
Sbjct: 3   PSSINGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTT 61

Query: 82  LLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGG--VKNGQK 139
           L               +  ++ P+     ++  +Y RR  F P +   V+ G   K+G+ 
Sbjct: 62  LNEMF-RYKTNLYKLKEERAIEPETFTQLVSSSLYERR--FGPYFVGPVVAGINSKSGKP 118

Query: 140 YLGMVSMIGVNFE-DSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDR 198
           ++    +IG   E    + +G  +     +    +  NL  ED  + + + +     RD 
Sbjct: 119 FIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPEDLFETISQALLNAADRDA 178

Query: 199 SAVNKLQIAKITEEGTT 215
            +     +  I ++   
Sbjct: 179 LSGWGAVVYIIKKDEVV 195

>d1q5qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Rhodococcus erythropolis [TaxId: 1833]} Length = 224

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Rhodococcus erythropolis [TaxId: 1833]

 Score =  103 bits (256), Expect = 2e-27
 Identities = 39/205 (19%), Positives = 72/205 (35%), Gaps = 17/205 (8%)

Query: 28  TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLD 87
           T++VAL YK G+L+A D   + G+ I  + VE++    ++S  G +G      EL+R   
Sbjct: 1   TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFA 60

Query: 88  ELILYDNMWDDGNSLGPKELHSYLTRVMY-NRRNKFDPLWNSLVLGGV--------KNGQ 138
             +       +G  L      + L  ++  N       L    +L G         + G+
Sbjct: 61  VEL-EHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGR 119

Query: 139 KYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRD- 197
                V          + A G G+  A+  L+  +  +   E  ++   + +      D 
Sbjct: 120 IVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESLYDAADDDS 179

Query: 198 ------RSAVNKLQIAKITEEGTTI 216
                  +         IT+ G   
Sbjct: 180 ATGGPDLTRGIYPTAVTITQAGAVH 204

>d1rypb_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 250

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  103 bits (257), Expect = 3e-27
 Identities = 36/205 (17%), Positives = 80/205 (39%), Gaps = 5/205 (2%)

Query: 26  TGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRN 85
            G + + +K  +G+++A +   S    +  +++ ++  +        SG   D++ L+  
Sbjct: 30  QGVTSLGIKATNGVVIATEKKSSSPLAM-SETLSKVSLLTPDIGAVYSGMGPDYRVLVDK 88

Query: 86  LDELILYDNMWDDGNSLGPKELHSYLTRVMYN--RRNKFDPLWNSLVLGGVKNGQKY-LG 142
             ++         G     K L S + ++M    +     P   SL++ G      + L 
Sbjct: 89  SRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLY 148

Query: 143 MVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVN 202
            V   G  F     A G G+  A+  L   W++ L  ED + +    ++  +  + +   
Sbjct: 149 QVDPSGSYFPWKATAIGKGSVAAKTFLEKRWNDELELEDAIHIALLTLKESVEGEFNGDT 208

Query: 203 KLQIAKITEEGTTISQPYALKTFWG 227
            +++A I +E   +     + T  G
Sbjct: 209 -IELAIIGDENPDLLGYTGIPTDKG 232

>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 250

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  102 bits (256), Expect = 4e-27
 Identities = 32/191 (16%), Positives = 65/191 (34%), Gaps = 3/191 (1%)

Query: 26  TGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRN 85
              + + +   DG+L+AA+    +         E+I  + +      +G  SD   L   
Sbjct: 29  HAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNE 88

Query: 86  L-DELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGV-KNGQKYLGM 143
           L      Y   + +              +  Y +     P   SL+  G  K+    L  
Sbjct: 89  LRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQ 148

Query: 144 VSMIGVNFEDSHVATGFGNHLARPILRDEWHE-NLSYEDGVKLLEKCMRVLLYRDRSAVN 202
               G          G  +  A  +L+ ++ E  ++ +  + L  K +   +   + +  
Sbjct: 149 SDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVSKLSAE 208

Query: 203 KLQIAKITEEG 213
           K++IA +T E 
Sbjct: 209 KVEIATLTREN 219

>d1yara1 d.153.1.4 (A:13-233) Proteasome alpha subunit (non-catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 221

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score =  101 bits (252), Expect = 7e-27
 Identities = 41/190 (21%), Positives = 73/190 (38%), Gaps = 5/190 (2%)

Query: 26  TGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRN 85
            G++ + +K+ +G+L+ +D        I   S+E+I+ I  +     SG ++D + L+  
Sbjct: 21  KGSTALGMKFANGVLLISDKK-VRSRLIEQNSIEKIQLIDDYVAAVTSGLVADARVLVDF 79

Query: 86  LDELILYDNMWDDGNSLGPKELHSYLTRVM--YNRRNKFDPLWNSLVLGGVKNGQKYLGM 143
                  + +   G+ +  + L   +   M  Y +     P   SL+  G+      L  
Sbjct: 80  ARISAQQEKV-TYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGPRLFD 138

Query: 144 VSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNK 203
               G   E    A G G       L  E+ ENL  ++ V L  K ++  L         
Sbjct: 139 CDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKALKSSLEEGEEL-KA 197

Query: 204 LQIAKITEEG 213
            +IA IT   
Sbjct: 198 PEIASITVGN 207

>d1irub_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 233

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  101 bits (252), Expect = 9e-27
 Identities = 37/201 (18%), Positives = 74/201 (36%), Gaps = 3/201 (1%)

Query: 26  TGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRN 85
            G   V +K  +G+++A +           +SV +++PI KH  L  SG   D++ L+  
Sbjct: 30  GGAPSVGIKAANGVVLATEKKQKSIL-YDERSVHKVEPITKHIGLVYSGMGPDYRVLVHR 88

Query: 86  LDELILYDNMWDDGNSLGPKELHSYLTRVMYNRR-NKFDPLWNSLVLGGVKNGQKYLGMV 144
             +L     +         + +    + +    +     P   SL++ G   G+ YL   
Sbjct: 89  ARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPYLFQS 148

Query: 145 SMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKL 204
              G  F     A G      +  L   ++E+L  ED +      ++       +  + +
Sbjct: 149 DPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQMTE-DNI 207

Query: 205 QIAKITEEGTTISQPYALKTF 225
           ++    E G     P  +K +
Sbjct: 208 EVGICNEAGFRRLTPTEVKDY 228

>d1iru1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 213

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 99.6 bits (247), Expect = 2e-26
 Identities = 42/203 (20%), Positives = 89/203 (43%), Gaps = 12/203 (5%)

Query: 23  PYV-TGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQE 81
           PYV  G +++A+  +D  ++A+D   S G +I  +   +   +   +++G SG   D   
Sbjct: 4   PYVFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLT 63

Query: 82  LLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYL 141
           L + + E  L      +  ++    + + L+ ++Y  R  F     +++ G  + G+  +
Sbjct: 64  LTKII-EARLKMYKHSNNKAMTTGAIAAMLSTILY-SRRFFPYYVYNIIGGLDEEGKGAV 121

Query: 142 GMVSMIGVNFEDSHVATGFGNHLARPILRDE---------WHENLSYEDGVKLLEKCMRV 192
                +G    DS  A G  + + +P+L ++          H  LS +  ++L++     
Sbjct: 122 YSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFIS 181

Query: 193 LLYRDRSAVNKLQIAKITEEGTT 215
              RD    + L+I  +T+EG  
Sbjct: 182 AAERDVYTGDALRICIVTKEGIR 204

>d1irug_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 245

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  100 bits (250), Expect = 2e-26
 Identities = 30/193 (15%), Positives = 72/193 (37%), Gaps = 3/193 (1%)

Query: 26  TGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRN 85
             ++ + ++ KDG++   +            S +R+  + +H  +  +G ++D + L   
Sbjct: 32  NSSTAIGIRCKDGVVFGVEKLVLSKL-YEEGSNKRLFNVDRHVGMAVAGLLADARSLADI 90

Query: 86  L-DELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGV-KNGQKYLGM 143
             +E   + + +     L        +    Y   +   P   S +LG    N    L M
Sbjct: 91  AREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYM 150

Query: 144 VSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNK 203
           +   GV++     A G     A+  +     + ++  D VK + K + ++    +    +
Sbjct: 151 IDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRDIVKEVAKIIYIVHDEVKDKAFE 210

Query: 204 LQIAKITEEGTTI 216
           L+++ + E     
Sbjct: 211 LELSWVGELTNGR 223

>d1rypd_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 241

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 99.0 bits (246), Expect = 7e-26
 Identities = 28/191 (14%), Positives = 68/191 (35%), Gaps = 3/191 (1%)

Query: 26  TGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELL-R 84
            GT  V +K K+ +++  +   +        +  ++  I  H +L  SG  +D + L+ +
Sbjct: 27  RGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRILIEK 86

Query: 85  NLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGV--KNGQKYLG 142
              E   +    +D  ++     +    +  Y +     P   S ++ G   ++ +  L 
Sbjct: 87  ARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLY 146

Query: 143 MVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVN 202
                G+    S    G  +   R  L   +          + ++  +R LL   ++   
Sbjct: 147 QTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKEPPATVEECVKLTVRSLLEVVQTGAK 206

Query: 203 KLQIAKITEEG 213
            ++I  +  + 
Sbjct: 207 NIEITVVKPDS 217

>d1rype_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 242

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 95.9 bits (238), Expect = 1e-24
 Identities = 33/195 (16%), Positives = 82/195 (42%), Gaps = 10/195 (5%)

Query: 26  TGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRN 85
            G++ + +  K+G+++  +   +    +   S+E+I  I +H     SG  +D + ++ +
Sbjct: 25  LGSTAIGIATKEGVVLGVEKRATSP-LLESDSIEKIVEIDRHIGCAMSGLTADARSMIEH 83

Query: 86  L-DELILYDNMWDDGNSLGPK------ELHSYLTRVMYNRRNKFDPLWNSLVLGGV-KNG 137
                + ++  +D+  ++             +        R    P   +L++ G   + 
Sbjct: 84  ARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADD 143

Query: 138 QKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRD 197
              L      G  +  +  A G G+  A+  L +EWH +L+ ++   L+ K ++ ++   
Sbjct: 144 GYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWHSSLTLKEAELLVLKILKQVMEEK 203

Query: 198 RSAVNKLQIAKITEE 212
               N  Q++ IT++
Sbjct: 204 LDE-NNAQLSCITKQ 217

>d1iruf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 238

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 94.7 bits (235), Expect = 3e-24
 Identities = 28/193 (14%), Positives = 63/193 (32%), Gaps = 7/193 (3%)

Query: 26  TGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRN 85
            G++ V LK K   ++ A               ++I  +  H  +  +G  +D + L   
Sbjct: 28  QGSATVGLKSKTHAVLVALKRAQSEL---AAHQKKILHVDNHIGISIAGLTADARLLCNF 84

Query: 86  L-DELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMV 144
           +  E +    ++D    +            +  +R    P    L++ G  +   ++   
Sbjct: 85  MRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQT 144

Query: 145 SMIGVNFEDSHVATGFGNHLARPILRDEWHEN--LSYEDGVKLLEKCMR-VLLYRDRSAV 201
                 F+   ++ G  +  AR  L     E    +  + VK   + +R  L        
Sbjct: 145 CPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTT 204

Query: 202 NKLQIAKITEEGT 214
             + I  + ++  
Sbjct: 205 KNVSIGIVGKDLE 217

>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 243

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 91.2 bits (226), Expect = 6e-23
 Identities = 28/190 (14%), Positives = 70/190 (36%), Gaps = 4/190 (2%)

Query: 26  TGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRN 85
            G++ V ++ +D +++  +   S       ++V +I  +  +  +  +G  +D + ++  
Sbjct: 27  KGSTAVGVRGRDIVVLGVEK-KSVAKLQDERTVRKICALDDNVCMAFAGLTADARIVINR 85

Query: 86  L-DELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGV-KNGQKYLGM 143
              E   +    +D  ++     +    +  Y + N   P   S ++ G   +G   L  
Sbjct: 86  ARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQ 145

Query: 144 VSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNK 203
               G        A G G    R  L   + +     D    ++  ++ LL   +S    
Sbjct: 146 TDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIETDD-LTIKLVIKALLEVVQSGGKN 204

Query: 204 LQIAKITEEG 213
           +++A +  + 
Sbjct: 205 IELAVMRRDQ 214

>d1q5qa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Rhodococcus erythropolis [TaxId: 1833]} Length = 227

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Rhodococcus erythropolis [TaxId: 1833]

 Score = 90.5 bits (224), Expect = 9e-23
 Identities = 31/199 (15%), Positives = 68/199 (34%), Gaps = 18/199 (9%)

Query: 26  TGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRN 85
            G SVV L ++DG+L  A+            ++ ++  +       A G+ ++F+ L R 
Sbjct: 18  RGRSVVVLTFRDGVLFVAEN--------PSTALHKVSELYDRLGFAAVGKYNEFENLRRA 69

Query: 86  L-DELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQK----Y 140
                 +    +D  +  G    ++Y   +      +  P    + +  V          
Sbjct: 70  GIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTEQPKPYEVEICVAEVGRVGSPKAPQ 129

Query: 141 LGMVSMIGVNFEDSHVATGFGNHLA-RPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRS 199
           L  ++  G   ++ H     G        +R+ +  +L  E  V +    +R     +  
Sbjct: 130 LYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYRADLDLEAAVGIAVNALRQGGAGEGE 189

Query: 200 ----AVNKLQIAKITEEGT 214
                V  L++A + +   
Sbjct: 190 KRNVDVASLEVAVLDQSRP 208

>d1rypa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 243

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 89.4 bits (221), Expect = 3e-22
 Identities = 31/200 (15%), Positives = 61/200 (30%), Gaps = 11/200 (5%)

Query: 26  TGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRN 85
           T  + +A++ KD  ++ +         +   +V  I  I +   +  +G I D +     
Sbjct: 29  TNINSLAVRGKDCTVVISQKK-VPDKLLDPTTVSYIFCISRTIGMVVNGPIPDARNAALR 87

Query: 86  L-DELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGV-KNGQKYLGM 143
              E   +   +                  +Y +R    PL   L    V +     +  
Sbjct: 88  AKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYK 147

Query: 144 VSMIGVNFEDSHVATGFGNHLARPILRDEWHENL-------SYEDGVKLLEKCMRVLLYR 196
               G        ATG         L + + ++        S+E  V+     M   L  
Sbjct: 148 TDPAGYYVGYKATATGPKQQEITTNLENHFKKSKIDHINEESWEKVVEFAITHMIDALGT 207

Query: 197 DRSAVNKLQIAKITEEGTTI 216
           + S  N L++   T++    
Sbjct: 208 EFSK-NDLEVGVATKDKFFT 226

>d1rypf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 87.4 bits (216), Expect = 1e-21
 Identities = 27/193 (13%), Positives = 60/193 (31%), Gaps = 8/193 (4%)

Query: 26  TGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRN 85
            G+  V L+     ++ A       +       ++I    +H  L  +G   D + L   
Sbjct: 30  QGSVTVGLRSNTHAVLVAL---KRNADELSSYQKKIIKCDEHMGLSLAGLAPDARVLSNY 86

Query: 86  L-DELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMV 144
           L  +      +++   ++               +     P    L++ G      +L   
Sbjct: 87  LRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKSGAHLLEF 146

Query: 145 SMIGVNFEDSHVATGFGNHLARPILRDEWHEN----LSYEDGVKLLEKCMRVLLYRDRSA 200
              G   E    A G  +  A+  L            + ++ +K   + +   L  +   
Sbjct: 147 QPSGNVTELYGTAIGARSQGAKTYLERTLDTFIKIDGNPDELIKAGVEAISQSLRDESLT 206

Query: 201 VNKLQIAKITEEG 213
           V+ L IA + ++ 
Sbjct: 207 VDNLSIAIVGKDT 219

>d1m4ya_ d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: HslV (ClpQ) protease
species: Thermotoga maritima [TaxId: 2336]

 Score = 79.4 bits (195), Expect = 4e-19
 Identities = 27/171 (15%), Positives = 58/171 (33%), Gaps = 13/171 (7%)

Query: 28  TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLD 87
           T+++ ++     +M  D   ++GST+   +  +++ +G+  +L            L +  
Sbjct: 1   TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRF 60

Query: 88  ELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMI 147
           E  L    W    +    EL          RR +   L              ++   +  
Sbjct: 61  EAKLR--EWGGNLTKAAVELAKDWRTDRVLRRLEALLLVAD-------KENIFIISGNGE 111

Query: 148 GVNFEDSHVATGFGNHLARPILR-DEWHENLSYEDGVKLLEKCMRVLLYRD 197
            +  +D   A G G   A    +    + +LS  +   ++EK M +     
Sbjct: 112 VIQPDDDAAAIGSGGPYALAAAKALLRNTDLSARE---IVEKAMTIAGEIC 159

>d1irua_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 244

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 78.5 bits (193), Expect = 4e-18
 Identities = 27/195 (13%), Positives = 66/195 (33%), Gaps = 6/195 (3%)

Query: 26  TGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRN 85
            G + VA++ KD  ++           +   +V  +  I ++     +G  +D +  ++ 
Sbjct: 34  GGLTSVAVRGKDCAVIVTQK-KVPDKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQR 92

Query: 86  L-DELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKY-LGM 143
              E   +   +     +            +Y +  +  PL   ++L G+   Q   +  
Sbjct: 93  ARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYK 152

Query: 144 VSMIGVNFEDSHVATGFGNHLARPILRDEWHEN--LSYEDGVKLLEKCMRVLLYRDRSAV 201
               G        A G     +   L  +  +    ++E  V+    C+  +L  D    
Sbjct: 153 CDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDFKP- 211

Query: 202 NKLQIAKITEEGTTI 216
           +++++  +T E    
Sbjct: 212 SEIEVGVVTVENPKF 226

>d2z3ba1 d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus subtilis [TaxId: 1423]} Length = 180

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: HslV (ClpQ) protease
species: Bacillus subtilis [TaxId: 1423]

 Score = 76.4 bits (187), Expect = 8e-18
 Identities = 24/168 (14%), Positives = 53/168 (31%), Gaps = 12/168 (7%)

Query: 27  GTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKH--SLLGASGEISDFQELLR 84
            T++ A+++K    M+ D   ++G  +  K   R      +   L G +G ++D   L  
Sbjct: 5   ATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFE 64

Query: 85  NLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMV 144
             +  +   N           EL          R+ +   +  +     + +G       
Sbjct: 65  KFEAKLEEYNGNLKRA---AVELAKEWRSDKVLRKLEAMLIVMNQDTLLLVSG------- 114

Query: 145 SMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRV 192
           +   +  +D  +A G G + A    R             ++    +  
Sbjct: 115 TGEVIEPDDGILAIGSGGNYALAAGRALKKHAGESMSASEIARAALET 162

>d1g3ka_ d.153.1.4 (A:) HslV (ClpQ) protease {Haemophilus influenzae [TaxId: 727]} Length = 173

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: HslV (ClpQ) protease
species: Haemophilus influenzae [TaxId: 727]

 Score = 69.4 bits (169), Expect = 2e-15
 Identities = 26/166 (15%), Positives = 60/166 (36%), Gaps = 12/166 (7%)

Query: 28  TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLL-GASGEISDFQELLRNL 86
           T++V+++    +++  D   S G+T+   +  +++ +    +L G +G  +D   L    
Sbjct: 1   TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELF 60

Query: 87  DELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSM 146
           +  +        G+ L      +   R     R     L         +     +  +  
Sbjct: 61  ERKLEMHQ----GHLLKSAVELAKDWRTDRALRKLEAMLI-----VADEKESLIITGIGD 111

Query: 147 IGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRV 192
           +    ED  +A G G + A    R       +     +++EK +R+
Sbjct: 112 VVQPEEDQILAIGSGGNYALSAAR--ALVENTELSAHEIVEKSLRI 155

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	242
d1iru2_	217	Proteasome beta subunit (catalytic) {Cow (Bos taur	100.0
d1iruc_	250	Proteasome alpha subunit (non-catalytic) {Cow (Bos	100.0
d1yara1	221	Proteasome alpha subunit (non-catalytic) {Archaeon	100.0
d1irul_	201	Proteasome beta subunit (catalytic) {Cow (Bos taur	100.0
d1rypk_	198	Proteasome beta subunit (catalytic) {Baker's yeast	100.0
d1irue_	234	Proteasome alpha subunit (non-catalytic) {Cow (Bos	100.0
d1rypf_	233	Proteasome alpha subunit (non-catalytic) {Baker's	100.0
d1rypc_	244	Proteasome alpha subunit (non-catalytic) {Baker's	100.0
d1ryp2_	233	Proteasome beta subunit (catalytic) {Baker's yeast	100.0
d1rypb_	250	Proteasome alpha subunit (non-catalytic) {Baker's	100.0
d1rypa_	243	Proteasome alpha subunit (non-catalytic) {Baker's	100.0
d1irua_	244	Proteasome alpha subunit (non-catalytic) {Cow (Bos	100.0
d1rypl_	212	Proteasome beta subunit (catalytic) {Baker's yeast	100.0
d1j2pa_	243	Proteasome alpha subunit (non-catalytic) {Archaeon	100.0
d1irug_	245	Proteasome alpha subunit (non-catalytic) {Cow (Bos	100.0
d1iruf_	238	Proteasome alpha subunit (non-catalytic) {Cow (Bos	100.0
d1ryph_	205	Proteasome beta subunit (catalytic) {Baker's yeast	100.0
d1irui_	220	Proteasome beta subunit (catalytic) {Cow (Bos taur	100.0
d1irub_	233	Proteasome alpha subunit (non-catalytic) {Cow (Bos	100.0
d1iruh_	202	Proteasome beta subunit (catalytic) {Cow (Bos taur	100.0
d1yarh1	203	Proteasome beta subunit (catalytic) {Archaeon Ther	100.0
d1irud_	243	Proteasome alpha subunit (non-catalytic) {Cow (Bos	100.0
d1rypg_	244	Proteasome alpha subunit (non-catalytic) {Baker's	100.0
d1j2qh_	202	Proteasome beta subunit (catalytic) {Archaeon Arch	100.0
d1rype_	242	Proteasome alpha subunit (non-catalytic) {Baker's	100.0
d1rypd_	241	Proteasome alpha subunit (non-catalytic) {Baker's	100.0
d1rypi_	222	Proteasome beta subunit (catalytic) {Baker's yeast	100.0
d1ryp1_	222	Proteasome beta subunit (catalytic) {Baker's yeast	100.0
d1q5qa_	227	Proteasome alpha subunit (non-catalytic) {Rhodococ	100.0
d1iruk_	199	Proteasome beta subunit (catalytic) {Cow (Bos taur	100.0
d1iruj_	204	Proteasome beta subunit (catalytic) {Cow (Bos taur	100.0
d1rypj_	204	Proteasome beta subunit (catalytic) {Baker's yeast	100.0
d1iru1_	213	Proteasome beta subunit (catalytic) {Cow (Bos taur	100.0
d1q5qh_	224	Proteasome beta subunit (catalytic) {Rhodococcus e	100.0
d2z3ba1	180	HslV (ClpQ) protease {Bacillus subtilis [TaxId: 14	99.94
d1m4ya_	171	HslV (ClpQ) protease {Thermotoga maritima [TaxId:	99.93
d1g3ka_	173	HslV (ClpQ) protease {Haemophilus influenzae [TaxI	99.92

>d1iru2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=8.2e-49  Score=328.54  Aligned_cols=213  Identities=43%  Similarity=0.831  Sum_probs=200.8

Q ss_pred             ccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCC
Q 026175           21 QLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGN  100 (242)
Q Consensus        21 ~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~  100 (242)
                      .+|+.+|+|+|||+++||||||+|+|++.+.++..++.+||++|+++++++++|..+|++.+.++++++..+++...++.
T Consensus         2 ~~~~~~GtTivgi~~~dgVviaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~   81 (217)
T d1iru2_           2 QNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGH   81 (217)
T ss_dssp             CSCCSEECCCEEEEETTEEEEEEECCEEETTEEEECSCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred             CCCcCcccEEEEEEECCEEEEEEcCCcccCCeeecCCcceEEEeCCCeEEEeccccHHHHHHHHHHHHHHHHhhhhcCCC
Confidence            46889999999999999999999999999999999999999999999999999999999999999987543444456789


Q ss_pred             CCCHHHHHHHHHHHHHhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhhcC--CCCC
Q 026175          101 SLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWH--ENLS  178 (242)
Q Consensus       101 ~i~~~~la~~l~~~~~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~--~~~s  178 (242)
                      +++++.+++++++.+|+++..++|+++++|++|+|+++|+||.+||+|++.+++++|+|+|+.+++++|++.|+  ++||
T Consensus        82 ~~~v~~~a~~l~~~~y~~~~~~~p~~~~~li~G~d~~~~~l~~~D~~G~~~~~~~~a~G~g~~~a~~~Le~~~~~~~~lt  161 (217)
T d1iru2_          82 SYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLS  161 (217)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEEETTEEEEEEECSSCCEEECSEEECTTHHHHTHHHHHHHHTSCSCCC
T ss_pred             CCCHHHHHHHHHHHHHHhccccCcccceEEEEEEcCCCcEEEEEecCceeEeeeEEeccCcHHHHHHHHHHHhcccCCCC
Confidence            99999999999999999987789999999999999999999999999999999999999999999999999765  8999


Q ss_pred             HHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCeEEeCCcccccccccccccC
Q 026175          179 YEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALKTFWGFTAFQN  233 (242)
Q Consensus       179 ~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g~~~~~~~ei~~~~~~~~~~~  233 (242)
                      .+||++++++||+.+.+||..++++++|++|+++|++++.|++++..|+++++++
T Consensus       162 ~~ea~~l~~~al~~a~~rd~~sg~~i~i~vi~~~G~~~~~~~~~~~~~~~a~~~~  216 (217)
T d1iru2_         162 QTEARDLVERCMRVLYYRDARSYNRFQTATVTEKGVEIEGPLSTETNWDIAHMIS  216 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEEECCCCCCGGGGCSC
T ss_pred             HHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEeCCCEEEcCCeeccccHHHHhhcC
Confidence            9999999999999999999999999999999999999999999999999999875

>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.4e-49  Score=340.21  Aligned_cols=226  Identities=15%  Similarity=0.141  Sum_probs=208.0

Q ss_pred             hccCCCCCCC---CCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHH
Q 026175            6 AKQGLVGPND---PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQEL   82 (242)
Q Consensus         6 ~~~~~~~~~~---~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l   82 (242)
                      -...+|.|+|   +|||+++|+++|+|+|||+++||||||+|++.+.+.++.+++.+|||+|++|++++++|..+|++.+
T Consensus         6 ~~~t~fsp~Grl~QvEyA~kav~~G~tvvgik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l   85 (250)
T d1iruc_           6 SRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVL   85 (250)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHHHTTSCCEEEEBCSSEEEEEECCCCCCTTBCCCSSCSSEEECSSSEEEEEEECHHHHHHH
T ss_pred             CCCeeECCCCcchHHHHHHHHHhcCCcEEEEEeCCEEEEEEeCccccCCcccCcccceEEECCCcEEEEeecccchHHHH
Confidence            3456888986   8999999999999999999999999999999998888888889999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH--HhhcCCCCCcceEEEEEEEEC-CcEEEEEECCCCceeeeCeEEEc
Q 026175           83 LRNLDELILYDNMWDDGNSLGPKELHSYLTRVM--YNRRNKFDPLWNSLVLGGVKN-GQKYLGMVSMIGVNFEDSHVATG  159 (242)
Q Consensus        83 ~~~lr~~~~~~~~~~~g~~i~~~~la~~l~~~~--~~~r~~~rP~~vs~lvaG~D~-~~p~Ly~idp~G~~~~~~~~aiG  159 (242)
                      ++.+|. .++.|++.++.+++++.+++.+++.+  +++++++|||+|++||+|+|+ ++|+||.+||+|++.+++++|+|
T Consensus        86 ~~~~r~-~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~~~~li~G~D~~~gp~Ly~~Dp~G~~~~~~~~a~G  164 (250)
T d1iruc_          86 TNELRL-IAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIG  164 (250)
T ss_dssp             HHHHHH-HHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBSSCCCCCEEEEEEEEETTTEEEEEEEETTTEEEECSEEEES
T ss_pred             HHHHHH-HHHHHHHHcCCCcchHHHHHHHHHHHHHHhhhccCCcceEEEEEEEEcCCCCCEEEEEcccccEeeeeEEEeC
Confidence            999998 48889999999999999999999988  456778999999999999995 68999999999999999999999


Q ss_pred             cchHhhHHHHhhhcCC-CCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCC----eEEeCCccccccccccccc
Q 026175          160 FGNHLARPILRDEWHE-NLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEG----TTISQPYALKTFWGFTAFQ  232 (242)
Q Consensus       160 ~g~~~a~~~Le~~~~~-~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g----~~~~~~~ei~~~~~~~~~~  232 (242)
                      +|++.++++|+++|++ +|+++||++++++||+.+.++|..++++++|++|++++    ++.++++||+..+.-.+-.
T Consensus       165 ~gs~~a~~~Le~~y~~~~ms~eeai~la~~al~~~~~~d~~~~~~iei~ii~~~~~~~~~~~l~~~Ei~~~l~~~~e~  242 (250)
T d1iruc_         165 NNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLIKKHEEE  242 (250)
T ss_dssp             TTTTHHHHHHHHHCCTTCCCHHHHHHHHHHHHHHSSSCTTCCSTTCEEEEEECCSSSCEEEECCHHHHHHHHHHHHTT
T ss_pred             cChHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHhcccCCCCCeEEEEEEEcCCCceeEEECCHHHHHHHHHHHHHH
Confidence            9999999999999985 89999999999999999999999999999999999986    6789999999875544333

>d1yara1 d.153.1.4 (A:13-233) Proteasome alpha subunit (non-catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=100.00  E-value=9.1e-49  Score=329.32  Aligned_cols=213  Identities=21%  Similarity=0.258  Sum_probs=198.7

Q ss_pred             CCCCCCC---CccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHH
Q 026175           10 LVGPNDP---IQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNL   86 (242)
Q Consensus        10 ~~~~~~~---~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l   86 (242)
                      +|.|.|.   +||+++|+++|+|+|||+++||||||+|+|.+ +.++.+++.+|||+|++|++++++|..+|++.+.+.+
T Consensus         2 ~fsp~G~l~QvEYa~~av~~G~t~vgi~~~dgVvlaad~r~~-~~~~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~   80 (221)
T d1yara1           2 VFSPDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVR-SRLIEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFA   80 (221)
T ss_dssp             CCCTTSCCHHHHHHHHHHTTSCCEEEEEETTEEEEEECCCCC-CTTBCSTTCCSEEEEETTEEEEEEEBHHHHHHHHHHH
T ss_pred             eECCCCcchHHHHHHHHHhcCCcEEEEEeCCEEEEEEecccC-CcccccCccceEEEecCCceEEeeeccchHHHHHHHH
Confidence            4777765   89999999999999999999999999999987 7888889999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhcCCCCCHHHHHHHHHHHH--HhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeEEEccchHh
Q 026175           87 DELILYDNMWDDGNSLGPKELHSYLTRVM--YNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHL  164 (242)
Q Consensus        87 r~~~~~~~~~~~g~~i~~~~la~~l~~~~--~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~aiG~g~~~  164 (242)
                      |. .++.|++.++++++++.+++.++..+  ++++.++|||++++||+|+|+++|+||++||+|++.+++++|+|+|+..
T Consensus        81 ~~-~~~~~~~~~~~~~~~~~l~~~~a~~~~~~~~~~~~rP~~~~~li~G~d~~gp~Ly~id~~G~~~~~~~~a~G~g~~~  159 (221)
T d1yara1          81 RI-SAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKATAIGSGKDA  159 (221)
T ss_dssp             HH-HHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBTTBCCCCEEEEEEEECSSCEEEEEECTTCCEEEBSEEEESTTHHH
T ss_pred             HH-HHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhccCCCcceEEEEEEEecCCCeEEEEcCCccEEEeeEEEECCchHH
Confidence            98 48889999999999999999999987  5567778999999999999999999999999999999999999999999


Q ss_pred             hHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcC-CCeEEeCCcccccc
Q 026175          165 ARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITE-EGTTISQPYALKTF  225 (242)
Q Consensus       165 a~~~Le~~~~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k-~g~~~~~~~ei~~~  225 (242)
                      ++++|+++|+++||.+||++++++||+.+.+++ .+.++++|++|++ ++++.++++||+.+
T Consensus       160 ~~~~Le~~~~~~ms~~ea~~la~~~l~~~~~~~-~~~~~~ei~~i~~~~~~r~l~~~ei~~~  220 (221)
T d1yara1         160 VVSFLEREYKENLPEKEAVTLGIKALKSSLEEG-EELKAPEIASITVGNKYRIYDQEEVKKF  220 (221)
T ss_dssp             HHHHHHHHCCTTCCHHHHHHHHHHHHHHTSCSS-CCCCCCEEEEEETTSCCEECCHHHHHTT
T ss_pred             HHHHHHHHhhccccHHHHHHHHHHHHHHHHhcc-CCCCCcEEEEEEcCCCEEECCHHHHHHh
Confidence            999999999999999999999999999988765 5677999999997 57999999999875

>d1irul_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=6.4e-48  Score=319.54  Aligned_cols=199  Identities=17%  Similarity=0.205  Sum_probs=190.8

Q ss_pred             ceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 026175           28 TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKEL  107 (242)
Q Consensus        28 ~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~~~l  107 (242)
                      ||+|||+++||||||+|+|.+.|.++.+++.+|||+|+++++|+++|..+|++.+.++++.+ ++.|++.++.+++++.+
T Consensus         1 TT~igi~~~dgVvlaaD~~~t~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~-~~~~~~~~~~~~~~~~~   79 (201)
T d1irul_           1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQ-CRIYELRNKERISVAAA   79 (201)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHH-HHHHHHHHSSCCCHHHH
T ss_pred             CeEEEEEECCEEEEEEcCccccCCEeecCCcccEEEeCCcEEEEEcCccchHHHHHHHHHHH-HHHHHHhcCCCCchhHH
Confidence            79999999999999999999999999999999999999999999999999999999999984 88899999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhhcCCCCCHHHHHHHHH
Q 026175          108 HSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLE  187 (242)
Q Consensus       108 a~~l~~~~~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eeai~l~~  187 (242)
                      ++++++.+|.++  .+||++++|++|+|+++|+||.+||+|++.+++++|+|+|+++++++|++.|+++||.+||+++++
T Consensus        80 a~~l~~~~~~~~--~~p~~~~~lvaG~d~~~~~l~~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~eea~~l~~  157 (201)
T d1irul_          80 SKLLANMVYQYK--GMGLSMGTMICGWDKRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLAR  157 (201)
T ss_dssp             HHHHHHHHHTTT--TSCCCBEEEEEEECSSSEEEEEEESSSCEEECSEEEESTTHHHHHHHHHTTCCTTCCHHHHHHHHH
T ss_pred             HHHHHHHhhhcc--CCCceEEEEEEEEecCCceEEEEccCceEEEeeeEEecCchHHHHHHHHhhccCCCCHHHHHHHHH
Confidence            999999998776  589999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcccCCCCcEEEEEEcCCCeEEeCCccccc-ccccc
Q 026175          188 KCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALKT-FWGFT  229 (242)
Q Consensus       188 ~~l~~~~~~d~~s~~~i~v~ii~k~g~~~~~~~ei~~-~~~~~  229 (242)
                      +||+.+.++|..++++++|++|+++|+++++++||++ +|++.
T Consensus       158 ~~l~~~~~~d~~sg~~~~v~~i~~~G~~~i~~~ev~~~~~~~~  200 (201)
T d1irul_         158 RAIYQATYRDAYSGGAVNLYHVREDGWIRVSSDNVADLHEKYS  200 (201)
T ss_dssp             HHHHHHHHHBTTCCSEEEEEEECSSCEEEEEEEEHHHHHHHHT
T ss_pred             HHHHHHHHhCCCCCCceEEEEEeCCceEEECHHHHHHHHHhhc
Confidence            9999999999999999999999999999999999976 77664

>d1rypk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.9e-47  Score=315.95  Aligned_cols=196  Identities=15%  Similarity=0.308  Sum_probs=187.7

Q ss_pred             CceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCHHH
Q 026175           27 GTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKE  106 (242)
Q Consensus        27 g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~~~  106 (242)
                      |+|+|||+++||||||+|+|.+.|.++..++.+|||+|++|++++++|..+|++.+.+.++. .++.|+++++.+++++.
T Consensus         1 m~tiigi~~~dgVvlaaD~r~s~g~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~-~~~~~~~~~~~~~~~~~   79 (198)
T d1rypk_           1 MDIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQA-NIQLYSIREDYELSPQA   79 (198)
T ss_dssp             CCCEEEEECSSCEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEESHHHHHHHHHHHHH-HHHHHHHHHTSCCCHHH
T ss_pred             CeEEEEEEECCEEEEEEcCCcccCCEeecCccceEEEecCCEEEEecCCcccHHHHHHHHHH-HHHHHHHHhCCCcchHH
Confidence            68999999999999999999999999999999999999999999999999999999999998 48889999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCcceEEEEEEEEC--CcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhhcCCCCCHHHHHH
Q 026175          107 LHSYLTRVMYNRRNKFDPLWNSLVLGGVKN--GQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVK  184 (242)
Q Consensus       107 la~~l~~~~~~~r~~~rP~~vs~lvaG~D~--~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eeai~  184 (242)
                      +++++++.+|.++..+|||++++||+|+|+  ++|+||++||+|++.+++++|+|+|+.+++++|+++|+++|+.+||++
T Consensus        80 ~~~~i~~~~~~~~~~~~P~~~~~liaG~D~~~~~p~L~~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~eea~~  159 (198)
T d1rypk_          80 VSSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLD  159 (198)
T ss_dssp             HHHHHHHHHHHHTTSSSCCCEEEEEEEEETTTTEEEEEEECTTCCEEECSEEECTTHHHHHHHHHHHHCCTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccccceEEEEEEEecCCCceEEEEecccccEEecceEEEeccchhhHHHHHhcccccCCHHHHHH
Confidence            999999999886555799999999999993  699999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcccCCCCcEEEEEEcCCCeEEeCCcccc
Q 026175          185 LLEKCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALK  223 (242)
Q Consensus       185 l~~~~l~~~~~~d~~s~~~i~v~ii~k~g~~~~~~~ei~  223 (242)
                      ++.+||+.+.+||+.++++++|++|++||++++++++++
T Consensus       160 l~~~~l~~~~~~d~~s~~~~~v~vi~~dG~~~~~~~~~~  198 (198)
T d1rypk_         160 LLKLCVQELEKRMPMDFKGVIVKIVDKDGIRQVDDFQAQ  198 (198)
T ss_dssp             HHHHHHHHHHHHCSBCCCCEEEEEEETTEEEEECCCSCC
T ss_pred             HHHHHHHHHHHhcCcCCCcEEEEEEcCCCeEEcchhccC
Confidence            999999999999999999999999999999999999875

>d1irue_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.7e-48  Score=330.31  Aligned_cols=217  Identities=13%  Similarity=0.210  Sum_probs=199.0

Q ss_pred             ccCCCCCCC---CCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHH
Q 026175            7 KQGLVGPND---PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELL   83 (242)
Q Consensus         7 ~~~~~~~~~---~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~   83 (242)
                      ...+|.|.|   ++||+++|+++|+|+|||+++||||||+|++.+. .++..+..+||++|++|++++++|..+|++.+.
T Consensus         4 ~~t~fsp~G~l~QvEYa~kav~~G~t~vgik~~dgVvlaad~~~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~   82 (234)
T d1irue_           4 GVNTFSPEGRLFQVEYDIEAIKLGSTAIGIQTSEGVCLAVEKRITS-PLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLI   82 (234)
T ss_dssp             CTTCBCTTSCBHHHHHHHHHHTTSCCEEEEEETTEEEEEEECCCCC-TTBCTTSCCSEEEEETTEEEEEEECHHHHHHHH
T ss_pred             CCceECCCCcchHHHHHHHHHHcCCCEEEEEeCCEEEEEEecCccC-CCcccCcccCEEEccCcEEEEEeeccchHHHHH
Confidence            456899996   7899999999999999999999999999999885 466688899999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH--HhhcCC-----CCCcceEEEEEEEECCcEEEEEECCCCceeeeCeE
Q 026175           84 RNLDELILYDNMWDDGNSLGPKELHSYLTRVM--YNRRNK-----FDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHV  156 (242)
Q Consensus        84 ~~lr~~~~~~~~~~~g~~i~~~~la~~l~~~~--~~~r~~-----~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~  156 (242)
                      +.+|.+ ++.|++.++++++++.++++|++.+  |+++.+     +|||+|++|++|+|+++|+||++||+|++.+++++
T Consensus        83 ~~~~~~-~~~~~~~~~~~i~~~~la~~i~~~~~~~t~~~~~~~~~~rP~~~~~il~G~D~~gp~Ly~idp~G~~~~~~~~  161 (234)
T d1irue_          83 DKARVE-TQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSGTFVQCDAR  161 (234)
T ss_dssp             HHHHHH-HHHHHHHHSSCCCHHHHHHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEETTEEEEEEECTTSCEEEBSEE
T ss_pred             HHHHHH-HHHHHHhhCCCCCHHHHHHHHHHHHHHHhhcccccccccccceEEEEEEEEcCCCCEEEEEecCcccceeeeE
Confidence            999984 8889999999999999999999987  444433     79999999999999999999999999999999999


Q ss_pred             EEccchHhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCC-CeEEeCCccccccc
Q 026175          157 ATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEE-GTTISQPYALKTFW  226 (242)
Q Consensus       157 aiG~g~~~a~~~Le~~~~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~-g~~~~~~~ei~~~~  226 (242)
                      |+|+|+++++++||+.|+++|+++||++++++||+.+.+++ .++.+++|++|+++ ++++++++||+...
T Consensus       162 a~G~gs~~~~~~Le~~~~~~~~~eeai~~a~~al~~~~~~~-~~~~~iei~ii~~~~~~k~l~~~ei~~~l  231 (234)
T d1irue_         162 AIGSASEGAQSSLQELYHKSMTLKEAIKSSLIILKQVMEEK-LNATNIELATVQPGQNFHMFTKEELEEVI  231 (234)
T ss_dssp             EESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSSC-CCTTSEEEEEECSSSCCEECCHHHHHHHH
T ss_pred             EeCCchHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhcc-CCCCCEEEEEEECCCCEEECCHHHHHHHH
Confidence            99999999999999999999999999999999999988766 67788999999985 79999999997653

>d1rypf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.5e-48  Score=327.09  Aligned_cols=217  Identities=15%  Similarity=0.072  Sum_probs=201.0

Q ss_pred             hhccCCCCCCC---CCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHH
Q 026175            5 QAKQGLVGPND---PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQE   81 (242)
Q Consensus         5 ~~~~~~~~~~~---~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~   81 (242)
                      |-...+|.|.|   ++||+++|+++|+|+|||+++||||||+|++.+. .+  .++.+|||+|+++++|++||..+|++.
T Consensus         6 d~~~t~FspdGrl~QvEyA~kav~~g~t~igi~~~dgvvlaad~~~~~-~l--~~~~~KI~~I~~~i~~~~sG~~~D~~~   82 (233)
T d1rypf_           6 DGDTVTFSPTGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNAD-EL--SSYQKKIIKCDEHMGLSLAGLAPDARV   82 (233)
T ss_dssp             SSCTTCCCTTSCCHHHHHHHHHHHTSCCEEEEECSSEEEEEEECCCSS-TT--BCCCCCEEEEETTEEEEEEECHHHHHH
T ss_pred             cCCCceECCCCcChHHHHHHHHHHcCCCEEEEEECCeEEEEEeccccc-cC--CcchheEEEcCCCEEEEEeeccccHHH
Confidence            44567899996   5799999999999999999999999999999884 44  467899999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH--HhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeEEEc
Q 026175           82 LLRNLDELILYDNMWDDGNSLGPKELHSYLTRVM--YNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATG  159 (242)
Q Consensus        82 l~~~lr~~~~~~~~~~~g~~i~~~~la~~l~~~~--~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~aiG  159 (242)
                      +++++|. .++.|++.++++++++.+|+.|++.+  |+++.++|||+|++||+|+|+++|+||++||+|++.+++++|+|
T Consensus        83 l~~~~r~-~~~~~~~~~~~~i~~~~la~~l~~~~~~~t~~~~~RP~gv~~il~G~d~~g~~Ly~idp~G~~~~~~~~aiG  161 (233)
T d1rypf_          83 LSNYLRQ-QCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKSGAHLLEFQPSGNVTELYGTAIG  161 (233)
T ss_dssp             HHHHHHH-HHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETTEEEEEEECTTSCEEEESEEEES
T ss_pred             HHHHHHH-HHHhhhhhcCCCCcHHHHHHHHHHHHHHHhcccccCCccceEEEEEEcCCCCEEEEEccccceecccEEEec
Confidence            9999998 58999999999999999999999988  66777789999999999999999999999999999999999999


Q ss_pred             cchHhhHHHHhhhc----CCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCC-CeEEeCCcccccc
Q 026175          160 FGNHLARPILRDEW----HENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEE-GTTISQPYALKTF  225 (242)
Q Consensus       160 ~g~~~a~~~Le~~~----~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~-g~~~~~~~ei~~~  225 (242)
                      +|++.++++|++.|    +++|+++||++++++||+.+.++|..++.+++|++|+++ +++.++++||+.+
T Consensus       162 ~gs~~a~~~Le~~~~~~~~~dms~eeai~l~~~~l~~~~~~d~~~~~~iev~ii~k~~~~~~l~~~ei~~~  232 (233)
T d1rypf_         162 ARSQGAKTYLERTLDTFIKIDGNPDELIKAGVEAISQSLRDESLTVDNLSIAIVGKDTPFTIYDGEAVAKY  232 (233)
T ss_dssp             TTHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHTTSCCSSCCCTTTEEEEEEETTEEEEEEEGGGGGGG
T ss_pred             CchHHHHHHHHHHHhhccccCCCHHHHHHHHHHHHHHHHhccCCCCCeEEEEEEECCCCeEECCHHHHHhh
Confidence            99999999999866    579999999999999999999999999999999999998 5899999999875

>d1rypc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.2e-48  Score=329.85  Aligned_cols=219  Identities=14%  Similarity=0.203  Sum_probs=203.0

Q ss_pred             hccCCCCCCC---CCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHH
Q 026175            6 AKQGLVGPND---PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQEL   82 (242)
Q Consensus         6 ~~~~~~~~~~---~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l   82 (242)
                      -...+|.|+|   ++||+++|+++|+|+|||+++||||||+|+|.+.+.++.+++.+||++|+++++++++|..+|++.+
T Consensus         7 ~~~t~fsp~G~~~Qveya~~ai~~G~T~vgi~~~dgVvlaad~r~s~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l   86 (244)
T d1rypc_           7 SRTTIFSPEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEIL   86 (244)
T ss_dssp             CCTTCBCTTSCBHHHHHHHHHHTTSCCEEEEEETTEEEEEEECSSCCSSBCSTTCCSSEEESSSSEEEEEEECHHHHHHH
T ss_pred             CCceeECCCCcChHHHHHHHHHhcCCCEEEEEeCCEEEEEEeCCccCCCcccCCccceEEEcCCCeEEEEecccCcHHHH
Confidence            3456788885   6799999999999999999999999999999998888888889999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH--HhhcCCCCCcceEEEEEEEE-CCcEEEEEECCCCceeeeCeEEEc
Q 026175           83 LRNLDELILYDNMWDDGNSLGPKELHSYLTRVM--YNRRNKFDPLWNSLVLGGVK-NGQKYLGMVSMIGVNFEDSHVATG  159 (242)
Q Consensus        83 ~~~lr~~~~~~~~~~~g~~i~~~~la~~l~~~~--~~~r~~~rP~~vs~lvaG~D-~~~p~Ly~idp~G~~~~~~~~aiG  159 (242)
                      .+.++. .++.|+++++++++++.+++.+++.+  |++++++|||+|++||+|+| +++|+||++||+|++.+++++|+|
T Consensus        87 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~rP~~~~~ll~G~d~~~gp~Ly~id~~Gs~~~~~~~a~G  165 (244)
T d1rypc_          87 INTARI-HAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVG  165 (244)
T ss_dssp             HHHHHH-HHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSCCCCCEEEEEEEEETTTEEEEEEECTTCCEEEBSEEEES
T ss_pred             HHHHHH-HHHHHHHHhCCCCCHHHHHHHHHHHHhhhhhccccCccceeEEEEEEecCCCceEEEecCCCcEeeeeeeecc
Confidence            999998 48889999999999999999999988  55678899999999999999 578999999999999999999999


Q ss_pred             cchHhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCC------eEEeCCcccccc
Q 026175          160 FGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEG------TTISQPYALKTF  225 (242)
Q Consensus       160 ~g~~~a~~~Le~~~~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g------~~~~~~~ei~~~  225 (242)
                      +|+.+++++|++.|+++|+++||++++++||+.+.++|..++++++|++|++++      ++.++++||+..
T Consensus       166 ~g~~~a~~~Le~~~~~~ms~eeai~l~~~al~~a~~~d~~~~~~iei~ii~~~~~~~~~~~~~~~~~Ei~~~  237 (244)
T d1rypc_         166 ANTSAAQTLLQMDYKDDMKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKGANDGEVYQKIFKPQEIKDI  237 (244)
T ss_dssp             TTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSSSSCCGGGEEEEEEECCSSSSSCEEEECCHHHHHHH
T ss_pred             chhHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEECCCcccceeEEECCHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999987      456777777654

>d1ryp2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.3e-47  Score=324.37  Aligned_cols=213  Identities=38%  Similarity=0.753  Sum_probs=199.8

Q ss_pred             ccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhc--
Q 026175           21 QLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDD--   98 (242)
Q Consensus        21 ~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~--   98 (242)
                      ..|+..|+|+|||+++||||||+|+|.+.+.++.+++.+|||+|++|++++++|..+|++.+.+.++.. ++.|++++  
T Consensus         2 ~~~i~tGtTivgi~~~dgVvlaaD~r~s~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~l~~~-~~~~~~~~~~   80 (233)
T d1ryp2_           2 QQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDL-VTENAYDNPL   80 (233)
T ss_dssp             CCCCEEECCEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHH-HHHHHTTCTT
T ss_pred             CCCccccceEEEEEECCEEEEEECCCcccCCeeecCCcceEEEeCCCEEEEeccCchHHHHHHHHHHHH-HHHHHHhhCC
Confidence            578999999999999999999999999989999999999999999999999999999999999999974 67777765  


Q ss_pred             ---CCCCCHHHHHHHHHHHHHhhcCCCCCcceEEEEEEEE-CCcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhhcC
Q 026175           99 ---GNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVK-NGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWH  174 (242)
Q Consensus        99 ---g~~i~~~~la~~l~~~~~~~r~~~rP~~vs~lvaG~D-~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~  174 (242)
                         +..++++.+++++++.+|+++..+||++|++||+|+| +++|+||.+||+|++.+++++|+|+|+++++++|++.|+
T Consensus        81 ~~~~~~~~~~~~a~~l~~~~y~~~~~~~P~~~~~liaG~d~~g~~~ly~~d~~G~~~~~~~~a~G~g~~~a~~~Le~~~~  160 (233)
T d1ryp2_          81 ADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVD  160 (233)
T ss_dssp             TTTTTSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHHHHHHHTTTCC
T ss_pred             CCCCcccCHHHHHHHHHHHHHhhccccCCceeEEEEEEEcCCCCeEEEEEcCCCcEEeeeeEEecCccHHHHHHHHHHHh
Confidence               6778999999999999999877789999999999999 567899999999999999999999999999999999997


Q ss_pred             -----CCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCC-CeEEeCCccccc-ccccccccCC
Q 026175          175 -----ENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEE-GTTISQPYALKT-FWGFTAFQNP  234 (242)
Q Consensus       175 -----~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~-g~~~~~~~ei~~-~~~~~~~~~~  234 (242)
                           ++|+.+||++++++||+.+.+||+.++++|+|++|++| |++++.+++|+. .|.+++..++
T Consensus       161 ~~~~~~~ms~eeA~~l~~~al~~~~~rD~~sg~~i~i~~itkd~g~~~~~~~~ie~~~~~~a~~~~~  227 (233)
T d1ryp2_         161 RESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTFKKNLQVENMKWDFAKDIKG  227 (233)
T ss_dssp             SGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTEEEEEEEEECCSCCCGGGGGCCS
T ss_pred             hcccccccCHHHHHHHHHHHHHHHHHhcccCCCCEEEEEEECCCCEEECChhcchhhhhhHhhhccC
Confidence                 78999999999999999999999999999999999998 799999999977 9999988765

>d1rypb_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.4e-48  Score=330.80  Aligned_cols=220  Identities=16%  Similarity=0.192  Sum_probs=197.6

Q ss_pred             hhccCCCCCCC---CCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHH
Q 026175            5 QAKQGLVGPND---PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQE   81 (242)
Q Consensus         5 ~~~~~~~~~~~---~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~   81 (242)
                      |-...+|.|+|   ++||+++|+++|+|+|||+++||||||+|+|.+ +.++..++.+||++|++|++++++|+.+|++.
T Consensus         6 d~~~t~fsp~G~l~QvEyA~kav~~G~tvvgi~~~dgVvlaad~r~~-~~~~~~~~~~ki~~I~~~i~~~~sG~~~D~~~   84 (250)
T d1rypb_           6 SFSLTTFSPSGKLGQIDYALTAVKQGVTSLGIKATNGVVIATEKKSS-SPLAMSETLSKVSLLTPDIGAVYSGMGPDYRV   84 (250)
T ss_dssp             CSBSSCBCTTSCBHHHHHHHHHHHTSCCEEEEEETTEEEEEEECCCS-CSSBCGGGCCSSEEEETTEEEEEEECHHHHHH
T ss_pred             cCCCceECCCCeehHHHHHHHHHHcCCCEEEEEeCCEEEEEEecccC-CccccccccceeEeccCCEEEEeeecccHHHH
Confidence            33456899995   779999999999999999999999999999988 55667888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH--HhhcCCCCCcceEEEEEEEEC-CcEEEEEECCCCceeeeCeEEE
Q 026175           82 LLRNLDELILYDNMWDDGNSLGPKELHSYLTRVM--YNRRNKFDPLWNSLVLGGVKN-GQKYLGMVSMIGVNFEDSHVAT  158 (242)
Q Consensus        82 l~~~lr~~~~~~~~~~~g~~i~~~~la~~l~~~~--~~~r~~~rP~~vs~lvaG~D~-~~p~Ly~idp~G~~~~~~~~ai  158 (242)
                      ++++++......|++.++.+++++.+++.+++.+  |+++.++|||+|++||+|+|+ +||+||++||+|++.+++++|+
T Consensus        85 l~~~~~~~~~~~y~~~~~~~~~~~~la~~~~~~~~~~~~~~~~rp~~v~~li~G~D~~~gp~Ly~id~~G~~~~~~~~a~  164 (250)
T d1rypb_          85 LVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWKATAI  164 (250)
T ss_dssp             HHHHHHHHHHHTTHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCCEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEE
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCcCeeEEEEEEEecCCCCCEEEEEcCcEEEEEeeEEec
Confidence            9999987533357888999999999999999987  667777899999999999995 7899999999999999999999


Q ss_pred             ccchHhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCC----------------eEEeCCccc
Q 026175          159 GFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEG----------------TTISQPYAL  222 (242)
Q Consensus       159 G~g~~~a~~~Le~~~~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g----------------~~~~~~~ei  222 (242)
                      |+|+.+++++||++|+++|+++||++++++||+.+..+| .++.+++|++|++++                ++.++++||
T Consensus       165 G~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~d-~s~~~iev~vi~~~~~~~~~~~~v~~~~~~~fr~ls~eei  243 (250)
T d1rypb_         165 GKGSVAAKTFLEKRWNDELELEDAIHIALLTLKESVEGE-FNGDTIELAIIGDENPDLLGYTGIPTDKGPRFRKLTSQEI  243 (250)
T ss_dssp             STTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCCSC-CSTTTEEEEEECSCCGGGTSEESCSSCCCCSEEECCHHHH
T ss_pred             CcchHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHhhcc-CCCCCEEEEEEeCCCcccccccccccccCCceEECCHHHH
Confidence            999999999999999999999999999999999999888 578899999999987                455666666


Q ss_pred             cccc
Q 026175          223 KTFW  226 (242)
Q Consensus       223 ~~~~  226 (242)
                      +...
T Consensus       244 ~~~l  247 (250)
T d1rypb_         244 NDRL  247 (250)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6543

>d1rypa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.6e-48  Score=328.44  Aligned_cols=218  Identities=14%  Similarity=0.097  Sum_probs=201.1

Q ss_pred             hhccCCCCCCCC---CccCcccccc-CceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHH
Q 026175            5 QAKQGLVGPNDP---IQRTQLPYVT-GTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQ   80 (242)
Q Consensus         5 ~~~~~~~~~~~~---~~~~~~a~~~-g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~   80 (242)
                      |-...+|.|+|+   +||+++|+++ |+|+|||+++||||||+|+|.+ +.++..++.+||++|++|++|+++|+.+|++
T Consensus         4 d~~~t~fsp~Grl~QvEYA~~av~~~g~T~igik~~dgVvlaad~r~~-~~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~   82 (243)
T d1rypa_           4 DRHITIFSPEGRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVP-DKLLDPTTVSYIFCISRTIGMVVNGPIPDAR   82 (243)
T ss_dssp             GGTSSSCCTTSCCHHHHHHHHHTTTTCCCEEEEECSSEEEEEEECCCC-CTTBCGGGCCSEEECSSSCEEEEESCHHHHH
T ss_pred             CCCCCeECCCCeehHHHHHHHHHHccCceEEEEEcCCEEEEEEecccc-ccccccCcccceEecCCCEEEEEecCcHHHH
Confidence            445678999975   5999999997 5689999999999999999988 5788889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH--HhhcCCCCCcceEEEEEEEE-CCcEEEEEECCCCceeeeCeEE
Q 026175           81 ELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVM--YNRRNKFDPLWNSLVLGGVK-NGQKYLGMVSMIGVNFEDSHVA  157 (242)
Q Consensus        81 ~l~~~lr~~~~~~~~~~~g~~i~~~~la~~l~~~~--~~~r~~~rP~~vs~lvaG~D-~~~p~Ly~idp~G~~~~~~~~a  157 (242)
                      .+.+.+|. .++.|++.++.+++++.+++.+++.+  |+++.++|||+|++|++|+| +++|+||++||+|++.+++++|
T Consensus        83 ~l~~~~~~-~~~~~~~~~~~~~~~~~~a~~ls~~~~~~~~~~~~rP~~v~~ll~G~D~~~g~~Ly~~Dp~G~~~~~~~~a  161 (243)
T d1rypa_          83 NAALRAKA-EAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKATA  161 (243)
T ss_dssp             HHHHHHHH-HHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTSCCCSCEEEEEEEETTTEEEEEEECTTSCEEEBSEEE
T ss_pred             HHHHHHHH-HHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcccccCccceEEEEEEccCCCCeEEEEcCCEEEEecceEE
Confidence            99999998 48899999999999999999999877  66777789999999999999 5789999999999999999999


Q ss_pred             EccchHhhHHHHhhhcCC-------CCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCeEEeCCcccccc
Q 026175          158 TGFGNHLARPILRDEWHE-------NLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALKTF  225 (242)
Q Consensus       158 iG~g~~~a~~~Le~~~~~-------~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g~~~~~~~ei~~~  225 (242)
                      +|+|+..++++|+++|++       +++.+||++++++||+.+.++|. ++++++|++++++|++.++++||++.
T Consensus       162 ~G~gs~~~~~~Le~~~~~~~~~~~~~~s~eeav~la~~~l~~~~~~d~-~~~~iei~iitk~g~~~l~~eeI~~~  235 (243)
T d1rypa_         162 TGPKQQEITTNLENHFKKSKIDHINEESWEKVVEFAITHMIDALGTEF-SKNDLEVGVATKDKFFTLSAENIEER  235 (243)
T ss_dssp             ESTTHHHHHHHHHHHHHHHCSSSCCCSSHHHHHHHHHHHHHHHHTCCC-CTTSEEEEEEETTEEEECCHHHHHHH
T ss_pred             eCccHHHHHHHHHHHhhcccccccccccHHHHHHHHHHHHHHHhhccC-CCCcEEEEEEeCCceEEeCHHHHHHH
Confidence            999999999999999974       56999999999999999999884 78899999999999999999999874

>d1irua_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.5e-47  Score=326.56  Aligned_cols=219  Identities=13%  Similarity=0.157  Sum_probs=199.8

Q ss_pred             hhccCCCCCCCCC---ccCccccccC-ceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHH
Q 026175            5 QAKQGLVGPNDPI---QRTQLPYVTG-TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQ   80 (242)
Q Consensus         5 ~~~~~~~~~~~~~---~~~~~a~~~g-~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~   80 (242)
                      |-..++|.|+|++   ||+++|+++| +|+|||+++||||||+|+|.+ +.++.+++.+|||+|++|++++++|..+|++
T Consensus         9 d~~~t~Fsp~Grl~QvEYA~kav~~gg~t~igIk~~dgVVlaad~r~~-~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~   87 (244)
T d1irua_           9 DRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVP-DKLLDSSTVTHLFKITENIGCVMTGMTADSR   87 (244)
T ss_dssp             TTTSSCCCTTSCCHHHHHHHHHHHTTCCEEEEEECSSEEEEEEECCCC-CSSBCGGGCCSEEESSSSCEEEEEECHHHHH
T ss_pred             CCCCceECCCCeEhHHHHHHHHHHhCCccEEEEEcCCEEEEEEecccc-cccccCCccceEEEecCCcEEEEecchHHHH
Confidence            4567899999655   9999999986 589999999999999999987 6777788999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH--HhhcCCCCCcceEEEEEEEEC-CcEEEEEECCCCceeeeCeEE
Q 026175           81 ELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVM--YNRRNKFDPLWNSLVLGGVKN-GQKYLGMVSMIGVNFEDSHVA  157 (242)
Q Consensus        81 ~l~~~lr~~~~~~~~~~~g~~i~~~~la~~l~~~~--~~~r~~~rP~~vs~lvaG~D~-~~p~Ly~idp~G~~~~~~~~a  157 (242)
                      .+.+.+|.. ++.|++.++++++++.+++.+++.+  +++++++|||+|++||+|+|+ ++|+||++||+|++.+++++|
T Consensus        88 ~l~~~~r~~-~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rP~~v~~ll~G~D~~~g~~Ly~~Dp~G~~~~~~~~a  166 (244)
T d1irua_          88 SQVQRARYE-AANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATA  166 (244)
T ss_dssp             HHHHHHHHH-HHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSBCCCSEEEEEEEEETTTEEEEEEECTTSCEEEBSEEE
T ss_pred             HHHHHHHHH-HHHHHHHcCCCCCchHHHHHHHHHHHHHhcccccCccceeeEEEEEcCCCCcEEEEEcCCccEEecceEe
Confidence            999999984 8899999999999999999999887  556777999999999999995 789999999999999999999


Q ss_pred             EccchHhhHHHHhhhcC--CCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCC--eEEeCCccccccc
Q 026175          158 TGFGNHLARPILRDEWH--ENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEG--TTISQPYALKTFW  226 (242)
Q Consensus       158 iG~g~~~a~~~Le~~~~--~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g--~~~~~~~ei~~~~  226 (242)
                      +|+|+..++++||++|.  ++|+++||++++++||+.+..+|. +.++++|+||++++  ++.++++||+.+.
T Consensus       167 ~G~gs~~~~~~Le~~~~~~~d~t~eeai~l~~~~l~~~~~~d~-~~~~iev~ii~~~~~~~~~l~~~ei~~~l  238 (244)
T d1irua_         167 AGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDF-KPSEIEVGVVTVENPKFRILTEAEIDAHL  238 (244)
T ss_dssp             EETTHHHHHHHHHHHTTSCCCCCHHHHHHHHHHHHHHHTTCCC-CTTSEEEEEEETTEEEEEECCHHHHHHHH
T ss_pred             ccCchhHHHHHHHhccccccCCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEEEeCCCcEEECCHHHHHHHH
Confidence            99999999999999994  589999999999999999999884 55789999999986  6889999998743

>d1rypl_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.3e-47  Score=317.07  Aligned_cols=210  Identities=18%  Similarity=0.237  Sum_probs=199.1

Q ss_pred             ceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 026175           28 TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKEL  107 (242)
Q Consensus        28 ~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~~~l  107 (242)
                      ||+|||+|+||||||+|+|.+++.++.+++.+|||+|+++++++++|..+|++.+.++++.+ ++.|++.++.+++++.+
T Consensus         1 TT~iai~~kdgVvlaaD~r~t~g~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~-~~~~~~~~~~~~~~~~~   79 (212)
T d1rypl_           1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQ-CRLHELREKERISVAAA   79 (212)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHH-HHHHHHHHSSCCCHHHH
T ss_pred             CeEEEEEECCEEEEEEcCccccCceeecCCcceEEEECCcEEEEeccchHHHHHHHHHHHHH-HHHHHHhcCCCCcHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999984 78899999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCcceEEEEEEEE-CCcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhhcCCCCCHHHHHHHH
Q 026175          108 HSYLTRVMYNRRNKFDPLWNSLVLGGVK-NGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLL  186 (242)
Q Consensus       108 a~~l~~~~~~~r~~~rP~~vs~lvaG~D-~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eeai~l~  186 (242)
                      ++++++++|.++  ..|+.++.+++|+| +++|+||++||+|++.+++++|+|+|+.+++++|++.|+++|+++||++++
T Consensus        80 a~~ls~~~~~~~--~~p~~~~~~l~G~~~~~g~~Ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~mt~~ea~~l~  157 (212)
T d1rypl_          80 SKILSNLVYQYK--GAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLG  157 (212)
T ss_dssp             HHHHHHHHHHTT--TSCCCBEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHhc--cCCcceEeeeeEeecCCCCEEEEECCCceEEecceEEEccCcccchhHHHHhccCCCCHHHHHHHH
Confidence            999999998766  46899999999998 579999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccCCCCcEEEEEEcCCCeEEeCCccccc-ccccccccCCccCCCC
Q 026175          187 EKCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALKT-FWGFTAFQNPTAGAEG  240 (242)
Q Consensus       187 ~~~l~~~~~~d~~s~~~i~v~ii~k~g~~~~~~~ei~~-~~~~~~~~~~~~~~~~  240 (242)
                      ++||+.+.+||+.++++++|++|+++|++.++++||.+ +|++.+...|..++-|
T Consensus       158 ~~al~~~~~rd~~sg~~v~v~vi~~~g~~~~~~~ev~~~~~~~~~~~~~~~~~~~  212 (212)
T d1rypl_         158 KRSILAAAHRDAYSGGSVNLYHVTEDGWIYHGNHDVGELFWKVKEEEGSFNNVIG  212 (212)
T ss_dssp             HHHHHHHHHHBTTCCSEEEEEEEETTEEEEEEEEEHHHHHHHHHHHHCCCTTSCC
T ss_pred             HHHHHHHHHhcCCCCCceEEEEEcCCceEEeCHHHHHHHHHHHHHhhccccCCCC
Confidence            99999999999999999999999999999999999988 9999988888776654

>d1j2pa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=2.5e-47  Score=324.89  Aligned_cols=218  Identities=18%  Similarity=0.263  Sum_probs=200.1

Q ss_pred             hhccCCCCCCCC---CccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHH
Q 026175            5 QAKQGLVGPNDP---IQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQE   81 (242)
Q Consensus         5 ~~~~~~~~~~~~---~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~   81 (242)
                      |-...+|.|+|+   +||+++|+++|+|+|||+++||||||+|+|.+.+. ...++.+|||+|+++++++++|..+|++.
T Consensus         6 d~~~t~fsp~Grl~QvEya~kav~~G~t~Igik~~dgVvlaad~r~~~~~-~~~~~~~KI~~I~~~i~~~~sG~~~D~~~   84 (243)
T d1j2pa_           6 DRAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKL-LEKDTIEKIYKIDEHICAATSGLVADARV   84 (243)
T ss_dssp             SSCTTCCCTTSCCHHHHHHHHHHHTSCCEEEEEETTEEEEEEECCCSCTT-BCGGGCCSEEECSSSEEEEEEECHHHHHH
T ss_pred             CCCCccCCCCCcchHHHHHHHHHHcCCCEEEEEECCEEEEEEecCccccC-ccccccccEeecCCcEEEEeeecccHHHH
Confidence            445678999976   89999999999999999999999999999998654 46678899999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH--HhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeEEEc
Q 026175           82 LLRNLDELILYDNMWDDGNSLGPKELHSYLTRVM--YNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATG  159 (242)
Q Consensus        82 l~~~lr~~~~~~~~~~~g~~i~~~~la~~l~~~~--~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~aiG  159 (242)
                      +.+.++. .++.|++.++.+++++.+++.++..+  ++++.++|||+|++|++|+|+ +|+||++||+|++.+++++|+|
T Consensus        85 l~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~rP~~~~~il~G~D~-~p~Ly~~Dp~G~~~~~~~~a~G  162 (243)
T d1j2pa_          85 LIDRARI-EAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVNE-VPKLYETDPSGALLEYKATAIG  162 (243)
T ss_dssp             HHHHHHH-HHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEESS-SEEEEEECTTCCEEEBSEEEES
T ss_pred             HHHHHHH-HHHHHHHhhCCCCcHHHHHHHHHHHHHHHhhhccCCccceeEEEEEecC-CceEEEEeccCceeeeeEEEeC
Confidence            9999998 47889999999999999999999988  456777899999999999985 5999999999999999999999


Q ss_pred             cchHhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCC--CeEEeCCccccccc
Q 026175          160 FGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEE--GTTISQPYALKTFW  226 (242)
Q Consensus       160 ~g~~~a~~~Le~~~~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~--g~~~~~~~ei~~~~  226 (242)
                      +|+..++++|++.|+++||++||++++++||+.+.++|. ++++|+|++++++  +++.++++||+.+.
T Consensus       163 ~g~~~a~~~Le~~y~~~ms~eeai~la~~~l~~~~~~d~-~~~~iei~iv~~~~~~~~~l~~~ei~~~~  230 (243)
T d1j2pa_         163 MGRMAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIESEL-VPENIEVGYVKVDDRTFKEVSPEELKPYV  230 (243)
T ss_dssp             TTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHTSCC-CGGGEEEEEEETTTCCCEECCHHHHHHHH
T ss_pred             CCcHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHhccc-CCCceEEEEEEeCCCcEEECCHHHHHHHH
Confidence            999999999999999999999999999999999999885 4578999999876  68999999998743

>d1irug_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.5e-47  Score=326.79  Aligned_cols=216  Identities=16%  Similarity=0.198  Sum_probs=197.3

Q ss_pred             ccCCCCCCC---CCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHH
Q 026175            7 KQGLVGPND---PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELL   83 (242)
Q Consensus         7 ~~~~~~~~~---~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~   83 (242)
                      ...+|.|+|   ++||+++|+++|+|+|||+++||||||+|+|.+. .++.+++.+|||+|++|++++++|..+|++.++
T Consensus        10 ~~t~Fsp~Grl~QvEYa~~av~~G~t~VGik~~dgVvlaad~~~~~-~~~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~   88 (245)
T d1irug_          10 SASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLS-KLYEEGSNKRLFNVDRHVGMAVAGLLADARSLA   88 (245)
T ss_dssp             CTTCCCTTSCCHHHHHHHHHHHTSCCEEEEECSSBEEEEEEEECSC-TTBCTTTTCCEEEEETTEEEEEEECHHHHHHHH
T ss_pred             CCceECCCCeehHHHHHHHHHHcCCcEEEEEeCCEEEEEEeccccc-cccccCccceEEEcCCCEEEEeccCchhHHHHH
Confidence            345788885   6899999999999999999999999999999874 555788999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH--HhhcCCCCCcceEEEEEEEE-CCcEEEEEECCCCceeeeCeEEEcc
Q 026175           84 RNLDELILYDNMWDDGNSLGPKELHSYLTRVM--YNRRNKFDPLWNSLVLGGVK-NGQKYLGMVSMIGVNFEDSHVATGF  160 (242)
Q Consensus        84 ~~lr~~~~~~~~~~~g~~i~~~~la~~l~~~~--~~~r~~~rP~~vs~lvaG~D-~~~p~Ly~idp~G~~~~~~~~aiG~  160 (242)
                      +++|. .++.|++.+|.+++++.++++|++.+  |++++++|||+|++||+|+| +++|+||++||+|++.+++++|+|+
T Consensus        89 ~~~~~-~~~~~~~~~g~~i~~~~la~~la~~~~~~t~~~~~rP~~vs~li~G~D~~~gp~Ly~iDp~G~~~~~~~~a~G~  167 (245)
T d1irug_          89 DIARE-EASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGK  167 (245)
T ss_dssp             HHHHH-HHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEETTTEEEEEEECTTCCEEEBSEEEEST
T ss_pred             HHHHH-HHHHHHHHhCCCCCHHHHHHHHHHHHHHhhccccccccceEEEEEEEcCCCCceEEEEcCCceEEeeeEEEECC
Confidence            99998 48899999999999999999999876  77888899999999999999 5799999999999999999999999


Q ss_pred             chHhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCC--CeEEeCCccccc
Q 026175          161 GNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEE--GTTISQPYALKT  224 (242)
Q Consensus       161 g~~~a~~~Le~~~~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~--g~~~~~~~ei~~  224 (242)
                      |++.++++||+.|+++||.+||++++++||+.+.+++..++.+|+|.+|+++  +.+.+.|.|+..
T Consensus       168 gs~~a~~~Le~~~~~dmt~eea~~l~~~~l~~~~~~~~~~~~~iei~~v~~~~~~~~~~~~~e~~~  233 (245)
T d1irug_         168 ARQAAKTEIEKLQMKEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGELTNGRHEIVPKDIRE  233 (245)
T ss_dssp             THHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHSCSSSSCCEEEEEEECBTTTTTCCEECCHHHHH
T ss_pred             ccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEEEEecCCCeEEEChHHHHH
Confidence            9999999999999999999999999999999998777777778999999885  676676776543

>d1iruf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4e-47  Score=322.76  Aligned_cols=219  Identities=16%  Similarity=0.130  Sum_probs=199.7

Q ss_pred             hhccCCCCCCC---CCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHH
Q 026175            5 QAKQGLVGPND---PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQE   81 (242)
Q Consensus         5 ~~~~~~~~~~~---~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~   81 (242)
                      |-...+|.|+|   ++||+++|+++|+|+|||+++||||||+|++.+.+ +.  .+.+|||+|++++++++||+.+|++.
T Consensus         4 d~~~tiFsp~Grl~QvEYA~kav~~G~t~vgik~~dgVvlaad~~~~~~-~~--~~~~KI~~I~~~i~~~~sG~~~D~~~   80 (238)
T d1iruf_           4 DNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSE-LA--AHQKKILHVDNHIGISIAGLTADARL   80 (238)
T ss_dssp             TSCTTCCCTTSCCHHHHHHHHHHHHSCCEEEEECSSEEEEEEECCCSST-TB--CCCCCEEEEETTEEEEEEECHHHHHH
T ss_pred             CCCCeeECCCCcchHHHHHHHHHhcCCCEEEEEeCCEEEEEEecccccC-CC--CccceEEEeCCceEEEEeccchHHHH
Confidence            44567899997   78999999999999999999999999999998854 43  36689999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH--HhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeEEEc
Q 026175           82 LLRNLDELILYDNMWDDGNSLGPKELHSYLTRVM--YNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATG  159 (242)
Q Consensus        82 l~~~lr~~~~~~~~~~~g~~i~~~~la~~l~~~~--~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~aiG  159 (242)
                      +++.++. .++.|++++|++++++.+++.|++.+  |+++.++|||+|++||+|+|++||+||++||+|++.+++++|+|
T Consensus        81 l~~~~~~-~~~~~~~~~~~~i~~~~l~~~l~~~~~~y~~~~~~rP~~v~~il~G~D~~gp~Ly~~D~~G~~~~~~~~a~G  159 (238)
T d1iruf_          81 LCNFMRQ-ECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIG  159 (238)
T ss_dssp             HHHHHHH-HHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETTEEEEEEECSSSCEEEESEEEES
T ss_pred             HHHHHHH-HHHHHHHHcCCCcchHHHHHHHHHHHHHHhhccCCCcccceEEEEEEcCCCceEEEEcCCCCEEeeeeEEEC
Confidence            9999998 48889999999999999999999874  88888899999999999999999999999999999999999999


Q ss_pred             cchHhhHHHHhhhcCCC--CCHHHHHHHHHHHHHHHHhcc-cCCCCcEEEEEEcCC-CeEEeCCcccccccc
Q 026175          160 FGNHLARPILRDEWHEN--LSYEDGVKLLEKCMRVLLYRD-RSAVNKLQIAKITEE-GTTISQPYALKTFWG  227 (242)
Q Consensus       160 ~g~~~a~~~Le~~~~~~--~s~eeai~l~~~~l~~~~~~d-~~s~~~i~v~ii~k~-g~~~~~~~ei~~~~~  227 (242)
                      +|++.++++|+++|+++  ++++||++++++||+.+..++ ..++.+|+|++|+++ +++.++++||+.+.+
T Consensus       160 ~g~~~~~~~Lek~~~~~~~~~~~eav~lai~al~~~~~~~~~~~~~~iev~ii~k~~~~~~l~~~ei~~~l~  231 (238)
T d1iruf_         160 ARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLE  231 (238)
T ss_dssp             TTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCTTCCCCTTTEEEEEEETTEEEEEECSGGGHHHHT
T ss_pred             CCchhhHHHHHhhcccccCCCHHHHHHHHHHHHHHHHhhcccCCCCcEEEEEEeCCCCEEECCHHHHHHHHH
Confidence            99999999999999985  489999999999999887654 467889999999998 689999999988553

>d1ryph_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.4e-46  Score=309.53  Aligned_cols=197  Identities=17%  Similarity=0.263  Sum_probs=184.8

Q ss_pred             ccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCC
Q 026175           23 PYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSL  102 (242)
Q Consensus        23 a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i  102 (242)
                      .+++|+|+|||+++||||||+|+|.+.+.++.+++.+||++|++|++++++|..+|++.+.++++. .++.|+++++++ 
T Consensus         5 ~v~~GtTivgi~~~dgVvlaaD~r~s~g~~i~~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~-~~~~~~~~~~~~-   82 (205)
T d1ryph_           5 EVSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQY-HLELYTSQYGTP-   82 (205)
T ss_dssp             CCBCCCCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEEBHHHHHHHHHHHHH-HHHHHHHHHSSC-
T ss_pred             cccCcceEEEEEECCEEEEEECCccccCceeeccccceEEEccCceEEeeccchhHHHHHHHHHHH-HHHHHHHHcCCc-
Confidence            478999999999999999999999999999999999999999999999999999999999999998 478899988865 


Q ss_pred             CHHHHHHHHHHHHHhhcCCCCCcceEEEEEEEE-CCcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhhcCCCCCHHH
Q 026175          103 GPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVK-NGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYED  181 (242)
Q Consensus       103 ~~~~la~~l~~~~~~~r~~~rP~~vs~lvaG~D-~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~ee  181 (242)
                      ++..+++++++++|.++   +||++++|++|+| +++|+||++||.|++.+++++|+|+|+.+++++|++.|+++||.+|
T Consensus        83 ~~~~~~~~~~~~~~~~~---~p~~~~~lvaG~d~~~~p~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~e  159 (205)
T d1ryph_          83 STETAASVFKELCYENK---DNLTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEE  159 (205)
T ss_dssp             CHHHHHHHHHHHHHHTT---TTCCEEEEEEEEETTTEEEEEEECTTSCCEEESEEEESGGGGGGHHHHHHHCCTTCCHHH
T ss_pred             cHHHHHHHHHHHHHhCc---cCceEEEEEEeecCCCCcEEEEECCCCcEEecCeEEeecCcHHHHHHHHhhhhcccCHHH
Confidence            58889999999988765   6999999999999 5799999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCeEE--eCCccccc
Q 026175          182 GVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTI--SQPYALKT  224 (242)
Q Consensus       182 ai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g~~~--~~~~ei~~  224 (242)
                      |++++++||+.+.+||+.++++++|++||+||+++  +.|+|+++
T Consensus       160 a~~l~~~al~~a~~rD~~sg~~v~v~iitk~G~~~~~~~~~e~~~  204 (205)
T d1ryph_         160 TVDFIKHSLSQAIKWDGSSGGVIRMVVLTAAGVERLIFYPDEYEQ  204 (205)
T ss_dssp             HHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEECHHHHTC
T ss_pred             HHHHHHHHHHHHHHhcCcCCCCEEEEEEcCCceEEEecCcccccc
Confidence            99999999999999999999999999999999764  57888764

>d1irui_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.8e-46  Score=312.35  Aligned_cols=199  Identities=19%  Similarity=0.274  Sum_probs=191.9

Q ss_pred             ceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 026175           28 TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKEL  107 (242)
Q Consensus        28 ~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~~~l  107 (242)
                      ||+|||+|+||||||+|+|.+.|.++.+++.+||++|++|++++++|..+|++.+.++++. .++.|++++|.+++++.+
T Consensus         1 TTivgi~~~dgVvlaaD~r~s~g~~i~~~~~~KI~~i~~~i~~~~aG~~~D~~~l~~~~~~-~~~~~~~~~~~~~~~~~~   79 (220)
T d1irui_           1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISS-NLELHSLSTGRLPRVVTA   79 (220)
T ss_dssp             CCEEEEEETTEEEEEECCCEESSSBEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHH-HHHHHHHHHCSCCCHHHH
T ss_pred             CeEEEEEECCEEEEEEcCCcccCCEeecCCcccEEEecCcEEEEEccccHHHHHHHHHHHH-HHHHHHHhcCCCCCHHHH
Confidence            7999999999999999999999999999999999999999999999999999999999998 488899999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhhcCCCCCHHHHHHHHH
Q 026175          108 HSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLE  187 (242)
Q Consensus       108 a~~l~~~~~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eeai~l~~  187 (242)
                      ++++++.+|.++   +|+++++|++|+|+++|+||++||.|++.+++++|+|+|+.+++++|++.|+++||++||+++++
T Consensus        80 a~~l~~~~y~~~---~p~~~~~ivaG~D~~g~~L~~id~~G~~~~~~~~a~Gsgs~~a~~~L~~~~~~~~s~~ea~~l~~  156 (220)
T d1irui_          80 NRMLKQMLFRYR---GYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVS  156 (220)
T ss_dssp             HHHHHHHHHHTT---TCSCEEEEEEEECSSCEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHSCCTTCCHHHHHTHHH
T ss_pred             HHHHHhhhhhcc---cccceeEEEEEEeCCCcEEEEEeCCCcEEEeeEEEEccccHHHHHHHHHhcccCCCHHHHHHHHH
Confidence            999999998765   79999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcccCCCCcEEEEEEcCCCeEEeCCccccccccccc
Q 026175          188 KCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALKTFWGFTA  230 (242)
Q Consensus       188 ~~l~~~~~~d~~s~~~i~v~ii~k~g~~~~~~~ei~~~~~~~~  230 (242)
                      +||+.+.+||+.++++++|++|+++|++++.+++++..|.+..
T Consensus       157 ~al~~~~~~D~~sg~~i~i~vitkdg~~~~~~~~~~~~~~~~~  199 (220)
T d1irui_         157 EAIAAGIFNDLGSGSNIDLCVISKNKLDFLRPYTVPNKKGTRL  199 (220)
T ss_dssp             HHHHHHHHHCTTCCSCEEEEEEETTEEECCSEEECCCCCCCCC
T ss_pred             HHHHHhhccCCCCCCcEEEEEEECCCeEEeCcccccchhhhhh
Confidence            9999999999999999999999999999999999999998874

>d1irub_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.7e-47  Score=320.78  Aligned_cols=217  Identities=19%  Similarity=0.253  Sum_probs=201.3

Q ss_pred             ccCCCCCCCC---CccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHH
Q 026175            7 KQGLVGPNDP---IQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELL   83 (242)
Q Consensus         7 ~~~~~~~~~~---~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~   83 (242)
                      ...+|.|+|+   +||+++|+++|+|+|||+++||||||+|+|.+.+. +..++.+|||+|+++++++++|..+|++.+.
T Consensus         8 ~~t~fsp~Gr~~Qveya~kav~~G~tvigik~~dgVvlaaD~r~~~~~-~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~   86 (233)
T d1irub_           8 SLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSIL-YDERSVHKVEPITKHIGLVYSGMGPDYRVLV   86 (233)
T ss_dssp             BSCCCCTTSCCHHHHHHHHHHHTSCCEEEEECSSCEEEEEECCCCCSS-BCSTTCCSSEESSSSEEEEEEECHHHHHHHH
T ss_pred             CCCeECCCCcChHHHHHHHHHHcCCCEEEEEeCCEEEEEEeCCcccCC-ccccccceEEEecCceEEEEeccchHHHHHH
Confidence            4567999975   89999999999999999999999999999988665 5688999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHH--hhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeEEEccc
Q 026175           84 RNLDELILYDNMWDDGNSLGPKELHSYLTRVMY--NRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFG  161 (242)
Q Consensus        84 ~~lr~~~~~~~~~~~g~~i~~~~la~~l~~~~~--~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~aiG~g  161 (242)
                      +.++.. ++.|++.++.+++++.+++.+++.++  ++...+||+++++|++|+|+++|+||++||+|++.+++++|+|+|
T Consensus        87 ~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~~li~g~d~~~~~ly~id~~G~~~~~~~~a~G~g  165 (233)
T d1irub_          87 HRARKL-AQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKATAMGKN  165 (233)
T ss_dssp             HHHHHH-HHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCSEEEEEEEECSSSEEEEEECTTSCEEEBSEEEESTT
T ss_pred             HHHHHH-HHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccccccceEEEeeeecccCCceEEEEcCCcceEeccceecCCc
Confidence            999984 88898999999999999999999884  445668999999999999999999999999999999999999999


Q ss_pred             hHhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCeEEeCCccccccc
Q 026175          162 NHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALKTFW  226 (242)
Q Consensus       162 ~~~a~~~Le~~~~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g~~~~~~~ei~~~~  226 (242)
                      +.+++++|++.|+++|+++||++++++||+.+.++|. +.++++|++|+++|++.++++||++..
T Consensus       166 s~~~~~~Le~~~~~~ms~eea~~l~~~~L~~~~~~d~-~~~~vev~ii~~~g~~~l~~~eI~~~l  229 (233)
T d1irub_         166 YVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQM-TEDNIEVGICNEAGFRRLTPTEVKDYL  229 (233)
T ss_dssp             HHHHHHHHHHHCCTTCCHHHHHHHHHHHHHTTCCSCC-CSSSEEEEEEETTEEEECCHHHHHHHH
T ss_pred             HHHHHHHHHhhcccCccHHHHHHHHHHHHHHHHhccC-CCCcEEEEEEeCCCeEECCHHHHHHHH
Confidence            9999999999999999999999999999999988885 567899999999999999999998754

>d1iruh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.9e-45  Score=304.77  Aligned_cols=197  Identities=18%  Similarity=0.265  Sum_probs=188.4

Q ss_pred             ceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 026175           28 TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKEL  107 (242)
Q Consensus        28 ~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~~~l  107 (242)
                      ||+|||+++||||||+|+|.+.|.++.+++.+||++|++|++++++|..+|++.+.++++. .++.|+++++.+++++.+
T Consensus         1 TTivai~~~dgVvlaaD~r~t~g~~i~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~-~~~~~~~~~~~~~~~~~~   79 (202)
T d1iruh_           1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTY-QLGFHSIELNEPPLVHTA   79 (202)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHH-HHHHHHHHHTSCCCHHHH
T ss_pred             CeEEEEEECCEEEEEECCccccCCeeecCCcceEEEcCCcEEEEeccchHHHHHHHHHHHH-HHHHHHHhcCCCCCHHHH
Confidence            7999999999999999999999999999999999999999999999999999999999998 488899999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCcceEEEEEEEE-CCcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhhcCCCCCHHHHHHHH
Q 026175          108 HSYLTRVMYNRRNKFDPLWNSLVLGGVK-NGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLL  186 (242)
Q Consensus       108 a~~l~~~~~~~r~~~rP~~vs~lvaG~D-~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eeai~l~  186 (242)
                      ++++++.+|.+|   +|+++++|++|+| +++|+||.+||.|++.+.+++|+|+|+.+++++|++.|+++|+++||++++
T Consensus        80 a~~l~~~l~~~~---~p~~~~~lvaG~d~~~~~~l~~~d~~g~~~~~~~~a~G~g~~~a~~~L~~~~~~~~~~~ea~~l~  156 (202)
T d1iruh_          80 ASLFKEMCYRYR---EDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFT  156 (202)
T ss_dssp             HHHHHHHHHHTT---TTCCEEEEEEEEETTTEEEEEEECTTSCCEECSEEEESGGGGGGHHHHHHHCCTTCCHHHHHHHH
T ss_pred             HHHHHHHHHhhc---cceeEEEEEEEeecCCCcEEEEECCCCceeecceeEEeCCHHHHHHHHHHhhccCCcHHHHHHHH
Confidence            999999998765   6999999999999 479999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccCCCCcEEEEEEcCCCeE--EeCCccccccccc
Q 026175          187 EKCMRVLLYRDRSAVNKLQIAKITEEGTT--ISQPYALKTFWGF  228 (242)
Q Consensus       187 ~~~l~~~~~~d~~s~~~i~v~ii~k~g~~--~~~~~ei~~~~~~  228 (242)
                      ++||+.+.+||..++++++|++|+++|++  +++++||+++|+.
T Consensus       157 ~~al~~a~~rD~~sg~~i~v~vi~~~G~~~~~~~~d~~~~~~~~  200 (202)
T d1iruh_         157 ANALALAMERDGSSGGVIRLAAIAESGVERQVLLGDQIPKFAVA  200 (202)
T ss_dssp             HHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEECGGGSCCCCCC
T ss_pred             HHHHHHHHhhCCCCCCCEEEEEEeCCCeEEEEcCHHHhhhhhhh
Confidence            99999999999999999999999999975  4999999998875

>d1yarh1 d.153.1.4 (H:1-203) Proteasome beta subunit (catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=100.00  E-value=6.3e-46  Score=307.81  Aligned_cols=196  Identities=19%  Similarity=0.286  Sum_probs=186.4

Q ss_pred             ceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 026175           28 TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKEL  107 (242)
Q Consensus        28 ~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~~~l  107 (242)
                      ||+|||+++||||||+|+|++.+.++.+++.+|||+|+++++++++|..+|++.+.+.++. .++.|++.++.+++++.+
T Consensus         1 TT~igi~~kdgVvia~D~r~s~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~-~~~~~~~~~~~~~~~~~~   79 (203)
T d1yarh1           1 TTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKA-ELELYRLQRRVNMPIEAV   79 (203)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHH-HHHHHHHHHSSCCCHHHH
T ss_pred             CcEEEEEECCEEEEEECCCcccCCEeecCCcccEEEecCCeeeecCCCcchHHHHHHHHHH-HHHHHHHhcCCCCcHHHH
Confidence            7999999999999999999999999999999999999999999999999999999999997 588999999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhhcCCCCCHHHHHHHHH
Q 026175          108 HSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLE  187 (242)
Q Consensus       108 a~~l~~~~~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eeai~l~~  187 (242)
                      ++++++.++..+  .|||++++|+||+|+ +|+||.+||+|++.+++++|+|+|+++++++|+++|+++||++||+++++
T Consensus        80 a~~l~~~~~~~~--~~p~~~~~lvaG~d~-~p~l~~~d~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~s~eea~~l~~  156 (203)
T d1yarh1          80 ATLLSNMLNQVK--YMPYMVQLLVGGIDT-APHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVI  156 (203)
T ss_dssp             HHHHHHHHHHTT--TSCCCEEEEEEEESS-SEEEEEECTTCCEEEESEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHhhc--cCCccceeEEEEEcC-CCeeEecCCccceecccccccCCCcHHHHHHHHHhccCCCCHHHHHHHHH
Confidence            999999887666  689999999999985 59999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcccCCCCcEEEEEEcC-CCeEEeCCcccccccc
Q 026175          188 KCMRVLLYRDRSAVNKLQIAKITE-EGTTISQPYALKTFWG  227 (242)
Q Consensus       188 ~~l~~~~~~d~~s~~~i~v~ii~k-~g~~~~~~~ei~~~~~  227 (242)
                      +||+.+.++|..++++++|++|++ +|++.++++||+..+.
T Consensus       157 ~~l~~~~~~d~~~~~~v~v~ii~~~~g~~~l~~~ei~~~~~  197 (203)
T d1yarh1         157 RAISAAKQRDSASGGMIDVAVITRKDGYVQLPTDQIESRIR  197 (203)
T ss_dssp             HHHHHHHHHCTTCCSCCEEEEEETTTEEEECCHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCCeEEEEEEECCCCEEECCHHHHHHHHH
Confidence            999999999999999999999986 5899999999988664

>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=9e-47  Score=321.45  Aligned_cols=218  Identities=14%  Similarity=0.209  Sum_probs=198.2

Q ss_pred             hhccCCCCCC---CCCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHH
Q 026175            5 QAKQGLVGPN---DPIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQE   81 (242)
Q Consensus         5 ~~~~~~~~~~---~~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~   81 (242)
                      |-..++|.|+   .++||+++|+++|+|+|||+++||||||+|+|.+ +.++.+++.+|||+|+++++|++||..+|++.
T Consensus         3 d~~~t~Fsp~Grl~QvEya~kav~~G~Tvvgik~~dgVvla~d~r~~-~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~   81 (243)
T d1irud_           3 DRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSV-AKLQDERTVRKICALDDNVCMAFAGLTADARI   81 (243)
T ss_dssp             CCCCSCCCTTSCCHHHHHHHHHHHTSCCEEEECCSSEEEEEECCCCC-CSSSCGGGGCSEEESSSSCEEEEEECHHHHHH
T ss_pred             CCCCeeECCCCcchHHHHHHHHHhcCCCEEEEEeCCEEEEEEecccc-CcccCCCccccEEECCCCEEEEEEEchhhHHH
Confidence            5567899999   5789999999999999999999999999999976 88989999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH--HhhcCCCCCcceEEEEEEEE-CCcEEEEEECCCCceeeeCeEEE
Q 026175           82 LLRNLDELILYDNMWDDGNSLGPKELHSYLTRVM--YNRRNKFDPLWNSLVLGGVK-NGQKYLGMVSMIGVNFEDSHVAT  158 (242)
Q Consensus        82 l~~~lr~~~~~~~~~~~g~~i~~~~la~~l~~~~--~~~r~~~rP~~vs~lvaG~D-~~~p~Ly~idp~G~~~~~~~~ai  158 (242)
                      +++.++. .++.|++.++.+++++.+++++++.+  |++++++|||+|++||+|+| +++|+||++||+|++.+++++|+
T Consensus        82 l~~~~~~-~~~~~~~~~~~~i~v~~la~~ls~~~~~~t~~~~~rp~~v~~li~G~D~~~~p~Ly~idp~G~~~~~~~~a~  160 (243)
T d1irud_          82 VINRARV-ECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAI  160 (243)
T ss_dssp             HHHHHHH-HHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEECSSSCEEEEEECTTSCEEEBSEEEE
T ss_pred             HHHHHHH-HHHHHHHhcCCCccHHHHHHHHHHHHHHHHhcccCCccceEEEEEEEcCCCCCEEEEecCcEEEEeccEEEE
Confidence            9999998 58899999999999999999999987  67788899999999999998 56899999999999999999999


Q ss_pred             ccchHhhHHHHhhhcCCCC--CHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCC-CeEEeCCcccccccc
Q 026175          159 GFGNHLARPILRDEWHENL--SYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEE-GTTISQPYALKTFWG  227 (242)
Q Consensus       159 G~g~~~a~~~Le~~~~~~~--s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~-g~~~~~~~ei~~~~~  227 (242)
                      |+|+..++++||+.|+++|  +.++++++++++|...   +..++.+++|++|+++ ++++++++||+.+..
T Consensus       161 G~gs~~a~~~Lek~~~~~~~~~~~~~i~~ai~~l~~~---~~~~~~~vei~ii~k~~~~~~l~~~eI~~~l~  229 (243)
T d1irud_         161 GRGAKSVREFLEKNYTDEAIETDDLTIKLVIKALLEV---VQSGGKNIELAVMRRDQSLKILNPEEIEKYVA  229 (243)
T ss_dssp             STTHHHHHHHHTTTCCSSTTCSHHHHHHHHHHHHHTT---SCTTSTTCCEEEEESSSCEECCCHHHHHHHTT
T ss_pred             CCChHHHHHHHHHhcccCCCccHHHHHHHHHHHHHHH---hcCCCCcEEEEEEECCCCEEECCHHHHHHHHH
Confidence            9999999999999999988  6677887777776654   4556789999999997 799999999987554

>d1rypg_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.7e-46  Score=318.69  Aligned_cols=222  Identities=19%  Similarity=0.170  Sum_probs=197.9

Q ss_pred             ccCCCCCC---CCCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHH
Q 026175            7 KQGLVGPN---DPIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELL   83 (242)
Q Consensus         7 ~~~~~~~~---~~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~   83 (242)
                      ...+|.|+   -++||+++|+++|+|+|||+++||||||+|++.+.+ ++..++.+||++|++|++++++|..+|++.++
T Consensus         7 ~~t~fsp~Grl~QvEya~kav~~G~t~igik~~dgVvlaad~~~~~~-~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~   85 (244)
T d1rypg_           7 SNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSK-LLVPQKNVKIQVVDRHIGCVYSGLIPDGRHLV   85 (244)
T ss_dssp             STTCCCTTSCCHHHHHHHHHHHTSCCEEEEEETTEEEEEEEEECCCT-TBCTTTSCCCEEETTTEEEEEEECHHHHHHHH
T ss_pred             CCceECCCCeehHHHHHHHHHHcCCCEEEEEeCCEEEEEEecccCCC-CccccccceEEEccCceEEEEccchhhHHHHH
Confidence            35678888   567999999999999999999999999999999866 44567789999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH--HhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeEEEccc
Q 026175           84 RNLDELILYDNMWDDGNSLGPKELHSYLTRVM--YNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFG  161 (242)
Q Consensus        84 ~~lr~~~~~~~~~~~g~~i~~~~la~~l~~~~--~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~aiG~g  161 (242)
                      +.++. .++.|++.++++++++.+++.++..+  |++++++|||+|++|++|+|+++|+||.+||+|++.+++++|+|+|
T Consensus        86 ~~~~~-~~~~~~~~~~~~~~~~~la~~~~~~~~~~t~~~~~RP~~~~~iiaG~D~~gp~Ly~idp~Gs~~~~~~~a~G~g  164 (244)
T d1rypg_          86 NRGRE-EAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAATGKG  164 (244)
T ss_dssp             HHHHH-HHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETTEEEEEEECTTSCEEEBSEEEESTT
T ss_pred             HHHHH-HHHHHHHhcCCCCCHHHHHHHHHHHHHHhhcccccCCceEEEEEEEEeCCCCEEEEEcCCccEEecCeEecCCc
Confidence            99998 48889999999999999999999988  5667789999999999999999999999999999999999999999


Q ss_pred             hHhhHHHHhh---hcCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcC---CCeE-EeCCccccccccccc
Q 026175          162 NHLARPILRD---EWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITE---EGTT-ISQPYALKTFWGFTA  230 (242)
Q Consensus       162 ~~~a~~~Le~---~~~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k---~g~~-~~~~~ei~~~~~~~~  230 (242)
                      +..++++||+   .|+++||++||++++++||+.+.+++..++.+++|.+|+.   ++.+ ..+.++++..++.++
T Consensus       165 s~~~~~~Lek~~~~~~~~mt~eeai~la~~~L~~~~~~~~~~~~~iev~ii~~~~~~~~~~~~~~e~~~~~~~~~~  240 (244)
T d1rypg_         165 RQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVKGDLLQEAIDFAQ  240 (244)
T ss_dssp             HHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHGGGGTTSCEEEEEEEEETTTTTTSEEECCTHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEEEEcCCCeEEECCHHHHHHHHHHHH
Confidence            9999999996   6899999999999999999999988888888999999974   3444 555555565555543

>d1j2qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=2.5e-45  Score=303.39  Aligned_cols=195  Identities=23%  Similarity=0.333  Sum_probs=186.2

Q ss_pred             ceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 026175           28 TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKEL  107 (242)
Q Consensus        28 ~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~~~l  107 (242)
                      ||+|||+++||||||+|+|.+.+.++.+++.+|||+|+++++|+++|..+|++.+.++++. .++.|++.++.+++++.+
T Consensus         1 TT~vgi~~~dgVvlaaD~r~s~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~-~~~~~~~~~~~~~~~~~~   79 (202)
T d1j2qh_           1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKI-EANLYEIRRERKPTVRAI   79 (202)
T ss_dssp             CCEEEEEETTEEEEEEECCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHH-HHHHHHHHHSSCCCHHHH
T ss_pred             CcEEEEEECCEEEEEECCCcccCCeeccCccceEEEecCcEEEEecCcchhHHHHHHHHHH-HhhhhhhccCCCccHHHH
Confidence            7999999999999999999999999999999999999999999999999999999999998 488999999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeee-CeEEEccchHhhHHHHhhhcCCCCCHHHHHHHH
Q 026175          108 HSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFED-SHVATGFGNHLARPILRDEWHENLSYEDGVKLL  186 (242)
Q Consensus       108 a~~l~~~~~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~-~~~aiG~g~~~a~~~Le~~~~~~~s~eeai~l~  186 (242)
                      ++++++.+|.+|  .+||++++|++|+|+++|+||.+||+|++.++ .++|+|+|+++++++|+++|+++||++||++++
T Consensus        80 a~~~~~~~~~~~--~~p~~~~~lvaG~d~~~~~l~~~d~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea~~l~  157 (202)
T d1j2qh_          80 ATLTSNLLNSYR--YFPYLVQLLIGGIDSEGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELA  157 (202)
T ss_dssp             HHHHHHHHHHTT--TSCCCEEEEEEEEETTEEEEEEECTTCCEEEESSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHH
T ss_pred             HHHHHHHHhhhc--ccceeeEEEEEEEcCCCceEEEEeCCCCeEeecceEEccCChHHHHHHHHhhcCCCCCHHHHHHHH
Confidence            999999998876  47999999999999999999999999998765 589999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccCCCCcEEEEEEcCCCeEEeCCcccccc
Q 026175          187 EKCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALKTF  225 (242)
Q Consensus       187 ~~~l~~~~~~d~~s~~~i~v~ii~k~g~~~~~~~ei~~~  225 (242)
                      ++||+.+.++|+.++++++|++|+++|++.++++||+..
T Consensus       158 ~~al~~~~~~d~~~g~~v~v~~i~~~g~~~~~~~ei~~~  196 (202)
T d1j2qh_         158 VRAIYSAMKRDSASGDGIDVVKITEDEFYQYSPEEVEQI  196 (202)
T ss_dssp             HHHHHHHHTTCTTSCSCEEEEEECSSCEEECHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCCeEEEEEEECCCEEEeCHHHHHHH
Confidence            999999999999999999999999999999999999873

>d1rype_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.8e-46  Score=319.28  Aligned_cols=216  Identities=17%  Similarity=0.241  Sum_probs=196.5

Q ss_pred             ccCCCCCCC---CCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHH
Q 026175            7 KQGLVGPND---PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELL   83 (242)
Q Consensus         7 ~~~~~~~~~---~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~   83 (242)
                      ...+|.|.|   ++||+++|+++|+|+|||+++||||||+|+|.+.+ +...++.+|||+|+++++|+++|..+|++.++
T Consensus         3 ~~t~fsp~G~l~Qveya~~a~~~G~t~Vgi~~~dgVvla~d~r~~~~-~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~   81 (242)
T d1rype_           3 GVSTFSPEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSP-LLESDSIEKIVEIDRHIGCAMSGLTADARSMI   81 (242)
T ss_dssp             CTTCBCTTSCBHHHHHHHHHHTTSCCEEEEECSSCEEEEEECCCSST-TBCGGGCCCEEEEETTEEEEEEESGGGHHHHH
T ss_pred             CcceECCCCcchHHHHHHHHHHcCCCEEEEEeCCEEEEEEeCCccCc-CcccCccceEEEcCCCEEEEEeecchhHHHHH
Confidence            356788885   67899999999999999999999999999998854 77788899999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHH--hh------cCCCCCcceEEEEEEEE-CCcEEEEEECCCCceeeeC
Q 026175           84 RNLDELILYDNMWDDGNSLGPKELHSYLTRVMY--NR------RNKFDPLWNSLVLGGVK-NGQKYLGMVSMIGVNFEDS  154 (242)
Q Consensus        84 ~~lr~~~~~~~~~~~g~~i~~~~la~~l~~~~~--~~------r~~~rP~~vs~lvaG~D-~~~p~Ly~idp~G~~~~~~  154 (242)
                      ++++. .++.|++.++++++++.+++.|++.++  ++      +..+|||+|++||+|+| +++|+||++||+|++.+++
T Consensus        82 ~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~rP~~~~~ii~G~D~~~~p~L~~idp~G~~~~~~  160 (242)
T d1rype_          82 EHART-AAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYN  160 (242)
T ss_dssp             HHHHH-HHHHHHHHHSSCCCHHHHHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEEEETTTEEEEEEECTTSCEEEBS
T ss_pred             HHHHH-HHHHHHHHcCCCCchhHHHHHHHHHHHHHhccccccchhccccceEEEEEEEeccccceEEEEEcCCCceeccc
Confidence            99998 488899999999999999999998773  33      23479999999999999 6789999999999999999


Q ss_pred             eEEEccchHhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcC-CCeEEeCCcccccc
Q 026175          155 HVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITE-EGTTISQPYALKTF  225 (242)
Q Consensus       155 ~~aiG~g~~~a~~~Le~~~~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k-~g~~~~~~~ei~~~  225 (242)
                      ++|+|+|+++++++|+++|+++||++||++++++||+.+.++| .+.++++|.+|++ +|++.+++++|+..
T Consensus       161 ~~a~G~gs~~~~~~Le~~~~~~ms~~ea~~la~~~l~~~~~~~-~~~~~~~v~~i~~~~g~~~l~~~~i~~~  231 (242)
T d1rype_         161 AKAIGSGSEGAQAELLNEWHSSLTLKEAELLVLKILKQVMEEK-LDENNAQLSCITKQDGFKIYDNEKTAEL  231 (242)
T ss_dssp             EEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSSC-CCTTSEEEEEEETTTEEEECCHHHHHHH
T ss_pred             eeecccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcc-CCCCceEEEEEECCCCeEECCHHHHHHH
Confidence            9999999999999999999999999999999999999998877 4566899999987 68999999999873

>d1rypd_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.9e-46  Score=317.92  Aligned_cols=216  Identities=14%  Similarity=0.194  Sum_probs=197.4

Q ss_pred             ccCCCCCCC---CCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHH
Q 026175            7 KQGLVGPND---PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELL   83 (242)
Q Consensus         7 ~~~~~~~~~---~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~   83 (242)
                      ...+|.|+|   ++||+.+|+++|+|+|||+++||||||+|++.+.+.+....+.+|||+|++|++|++||..+|++.++
T Consensus         5 ~~t~fsp~Grl~QvEya~kav~~G~tvIgik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~   84 (241)
T d1rypd_           5 ALSIFSPDGHIFQVEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRILI   84 (241)
T ss_dssp             CCSCCBTTTBCHHHHHHHHHHTTSCCEEEEECSSCEEEEEECCCSSCCBCTTTSCCSEEEEETTEEEEEEECHHHHHHHH
T ss_pred             CCceECCCCcEeHHHHHHHHHHcCCCEEEEEeCCEEEEEEEccccccCcccccccccEEEeCCCEEEEeeeccchHHHHH
Confidence            456788986   88999999999999999999999999999999977766667889999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH--HhhcCCCCCcceEEEEEEEEC--CcEEEEEECCCCceeeeCeEEEc
Q 026175           84 RNLDELILYDNMWDDGNSLGPKELHSYLTRVM--YNRRNKFDPLWNSLVLGGVKN--GQKYLGMVSMIGVNFEDSHVATG  159 (242)
Q Consensus        84 ~~lr~~~~~~~~~~~g~~i~~~~la~~l~~~~--~~~r~~~rP~~vs~lvaG~D~--~~p~Ly~idp~G~~~~~~~~aiG  159 (242)
                      +.++. .++.|++.++.+++++.+++.++..+  |+++.++|||+|++|++|+|+  ++|+||++||+|++.+++++|+|
T Consensus        85 ~~~~~-~~~~~~~~~~~~i~~~~la~~i~~~~~~~t~~~~~rP~~v~~li~G~d~~~~~p~Ly~idp~G~~~~~~~~a~G  163 (241)
T d1rypd_          85 EKARV-EAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIG  163 (241)
T ss_dssp             HHHHH-HHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSSTTBCCCSEEEEEEECCTTCCSCEEEEECTTSCEEEBSEEEES
T ss_pred             HHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHHHHhhccccCcccceEEEEEEccccCcceEEEecCCEEEEeeCeEEEC
Confidence            99998 48889999999999999999999988  566777999999999999993  68999999999999999999999


Q ss_pred             cchHhhHHHHhhhcCC---CCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCC-CeEEeCCccccccc
Q 026175          160 FGNHLARPILRDEWHE---NLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEE-GTTISQPYALKTFW  226 (242)
Q Consensus       160 ~g~~~a~~~Le~~~~~---~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~-g~~~~~~~ei~~~~  226 (242)
                      +|++.++++|++.|++   +|+.+||++++++||+.+.++   ++.+++|+++++| +++.++++||+...
T Consensus       164 ~gs~~~~~~Le~~~~~~~~~~t~~e~i~lal~al~~~~~~---~~~~iei~ii~~d~~~~~l~~~ei~~~l  231 (241)
T d1rypd_         164 RNSKTVREFLEKNYDRKEPPATVEECVKLTVRSLLEVVQT---GAKNIEITVVKPDSDIVALSSEEINQYV  231 (241)
T ss_dssp             TTHHHHHHHHHTTCCTTSCCCSHHHHHHHHHHHHHHHHCS---CSTTEEEEEEETTTEEEECCHHHHHHHH
T ss_pred             cCHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHhcC---CCCcEEEEEEECCCCEEECCHHHHHHHH
Confidence            9999999999999964   699999999999999998753   4678999999997 58999999997643

>d1rypi_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-43  Score=298.54  Aligned_cols=197  Identities=15%  Similarity=0.240  Sum_probs=181.9

Q ss_pred             ceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 026175           28 TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKEL  107 (242)
Q Consensus        28 ~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~~~l  107 (242)
                      ||+|||+++||||||+|+|.+.+.++.+++.+|||+|+++++++++|..+|++.+.++++.+ ++.|++.++.++++..+
T Consensus         1 TTiVgik~~dGVviaaD~r~s~g~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~-~~~~~~~~~~~~~v~~~   79 (222)
T d1rypi_           1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSN-IELHSLYTSREPRVVSA   79 (222)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHH-HHHHHHHHTSCCCHHHH
T ss_pred             CeEEEEEECCEEEEEECCCcccCceeecCCcccEEEEcCCEEEEecccchHHHHHHHHHHHH-HHHhhhhhCCCCcHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999984 78888889999999999


Q ss_pred             HHHHHHHHHhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhhcCCCCCHHHHHHHHH
Q 026175          108 HSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLE  187 (242)
Q Consensus       108 a~~l~~~~~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eeai~l~~  187 (242)
                      ++++++.+|..+   +|+++++|++|+|+++|+||.+||+|++.+++++|+|+|+++++++|+++|+++||++||+++++
T Consensus        80 a~~l~~~~~~~~---~p~~~~~l~aG~d~~g~~Ly~id~~G~~~~~~~~a~Gsg~~~a~~~Le~~~k~~ms~eea~~l~~  156 (222)
T d1rypi_          80 LQMLKQHLFKYQ---GHIGAYLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLAS  156 (222)
T ss_dssp             HHHHHHHHHHTT---TCSCEEEEEEEEETTEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCCSSCCHHHHHHHHH
T ss_pred             HHHHHHHHHhhh---hccceeEEEEEEcCCCcEEEEEecCcceEEeeEEEECCCcHHHHHHHHhhccCCCCHHHHHHHHH
Confidence            999999887654   79999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcccCCCCcEEEEEEcCCC-eEEeCCccccccccc
Q 026175          188 KCMRVLLYRDRSAVNKLQIAKITEEG-TTISQPYALKTFWGF  228 (242)
Q Consensus       188 ~~l~~~~~~d~~s~~~i~v~ii~k~g-~~~~~~~ei~~~~~~  228 (242)
                      +||+.+.+||..++++++|+++++++ .+++.++..+..|+.
T Consensus       157 ~al~~a~~~D~~sg~~i~i~vi~~~~~~~~~~~~~~~~~~~~  198 (222)
T d1rypi_         157 DAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRNYLTPNVREE  198 (222)
T ss_dssp             HHHHHHHHHCTTCCSCEEEEEEETTSCEEEEEEEECCCCCCC
T ss_pred             HHHHHHhcccCCCCCcEEEEEEEcCCCeEEecCcCCchhhhh
Confidence            99999999999999999999999874 555555544444433

>d1ryp1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.5e-42  Score=290.93  Aligned_cols=193  Identities=18%  Similarity=0.274  Sum_probs=178.4

Q ss_pred             ccc-cccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcC
Q 026175           21 QLP-YVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDG   99 (242)
Q Consensus        21 ~~a-~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g   99 (242)
                      |+| +.+|+|+|||+++||||||+|+|.+.+.++.+++.+|||+|++|++++++|..+|++.+.++++.. ++.|++.++
T Consensus         2 ~~py~~nG~Tivgi~~~dgVviaaD~r~s~~~~i~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~-~~~~~~~~~   80 (222)
T d1ryp1_           2 FNPYGDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNS-VKWYHFDHN   80 (222)
T ss_dssp             CCCCCCCCCEEEEEECSSCEEEEEECCEEETTEEEESCCCCCEECSTTCEEEEEESHHHHHHHHHHHHHH-HHHHHHHTT
T ss_pred             CCCccCCCcEEEEEEECCEEEEEECCCcccCCEeccCCcceEEEecCCEEEEeccChHHHHHHHHHHHHH-hhhhhhhcC
Confidence            567 458999999999999999999999999999999999999999999999999999999999999984 777877664


Q ss_pred             -CCCCHHHHHHHHHHHHHhhcCCCCCcceEEEEEEEE-CCcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhhcC---
Q 026175          100 -NSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVK-NGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWH---  174 (242)
Q Consensus       100 -~~i~~~~la~~l~~~~~~~r~~~rP~~vs~lvaG~D-~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~---  174 (242)
                       .++++..++++++..++..+  +|||+|++||+|+| +++|+||.+||+|++.+++++|+|+|+++++++||+.|+   
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~--~~p~~~~~li~G~d~~~~~~Ly~~D~~G~~~~~~~~a~G~g~~~a~~~Le~~~~~~~  158 (222)
T d1ryp1_          81 DKKLSINSAARNIQHLLYGKR--FFPYYVHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKN  158 (222)
T ss_dssp             TCCCCHHHHHHHHHHHHHTTT--TSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTSCTT
T ss_pred             CCCCcHHHHHHHHHHHHHhhh--hhhheeeeeEEEEeCCCCeEEEEECCCcEEEEeceEEEcccHHHHHHHHHHhhcccc
Confidence             66789999999988877665  68999999999999 467899999999999999999999999999999999986   


Q ss_pred             --------------CCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCeEE
Q 026175          175 --------------ENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTI  216 (242)
Q Consensus       175 --------------~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g~~~  216 (242)
                                    ++|+.+||++++++||..+.+||+.++++++|++|++||++.
T Consensus       159 ~~~~~~~~~~~~~~~~lt~~ea~~l~~~al~~a~~rd~~sg~~v~v~iitkdGv~~  214 (222)
T d1ryp1_         159 QYEPGTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLEILIVTKDGVRK  214 (222)
T ss_dssp             CBCTTSTTCSBCCCCCCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEE
T ss_pred             ccCcccchhhhcccccccHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEeCCCEEE
Confidence                          689999999999999999999999999999999999999874

>d1q5qa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Rhodococcus erythropolis [TaxId: 1833]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Rhodococcus erythropolis [TaxId: 1833]

Probab=100.00  E-value=4.6e-44  Score=301.80  Aligned_cols=204  Identities=16%  Similarity=0.190  Sum_probs=177.1

Q ss_pred             CCCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHh
Q 026175           15 DPIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDN   94 (242)
Q Consensus        15 ~~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~   94 (242)
                      +++||+.+|+++|+|+|||+++||||||+|+|.+        +.+||++|++||+|+++|+.+|++.|+++++. .++.|
T Consensus         7 ~q~eyA~~av~~GtT~vgi~~~~GVvlaad~r~~--------s~~KI~~i~~~i~~~~sG~~aD~~~l~~~~r~-~~~~~   77 (227)
T d1q5qa_           7 DRSELARKGIARGRSVVVLTFRDGVLFVAENPST--------ALHKVSELYDRLGFAAVGKYNEFENLRRAGIV-HADMR   77 (227)
T ss_dssp             HHHHHHHHHHHTSCCEEEEECSSEEEEEECCSCS--------SSCSEEEEETTEEEEEEECHHHHHHHHHHHHH-HHHHH
T ss_pred             hHHHHHHHHHhcCCCEEEEEECCEEEEEEccCCC--------CcceEEEecCceEEEecCchHHHHHHHHHHHH-HHHHH
Confidence            4789999999999999999999999999999854        56899999999999999999999999999998 47888


Q ss_pred             hhhcC-CCCCHHHHHHHHHHHH-HhhcCCCCCcceEEEEEEEEC----CcEEEEEECCCCceeeeCe-EEEccchHhhHH
Q 026175           95 MWDDG-NSLGPKELHSYLTRVM-YNRRNKFDPLWNSLVLGGVKN----GQKYLGMVSMIGVNFEDSH-VATGFGNHLARP  167 (242)
Q Consensus        95 ~~~~g-~~i~~~~la~~l~~~~-~~~r~~~rP~~vs~lvaG~D~----~~p~Ly~idp~G~~~~~~~-~aiG~g~~~a~~  167 (242)
                      +++++ .+++++.+++.+++.+ +.+..++|||+|++||||+|.    ++|+||++||+|++.++++ ++.|.++..+++
T Consensus        78 ~~~~~~~~~~~~~la~~~~~~~~~~~~~~~rP~gvs~lvaG~D~~g~~~~p~Ly~vDpsG~~~~~~~~~~~g~~s~~~~~  157 (227)
T d1q5qa_          78 GYSYDRRDVTGRSLANAYAQTLGTIFTEQPKPYEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQHFVVMGGTTEPIAT  157 (227)
T ss_dssp             HHHSCGGGCCHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCSSCCCCCEEEEEETTSCEEEESSEEEESSSHHHHHH
T ss_pred             HHHhCCCCCcHHHHHHHHHHHHHHHHHhcCCCceEEEEEEEEecCCCCCCCEEEEEccccceeeecccccCCCchHHHHH
Confidence            88888 4689999999998775 233234799999999999984    5799999999999887665 666778889999


Q ss_pred             HHhhhcCCCCCHHHHHHHHHHHHHHHHhccc----CCCCcEEEEEEcCCC----eEEeCCcccccccc
Q 026175          168 ILRDEWHENLSYEDGVKLLEKCMRVLLYRDR----SAVNKLQIAKITEEG----TTISQPYALKTFWG  227 (242)
Q Consensus       168 ~Le~~~~~~~s~eeai~l~~~~l~~~~~~d~----~s~~~i~v~ii~k~g----~~~~~~~ei~~~~~  227 (242)
                      +|+++|+++||++||++++++||+.+..+|.    +++.+++|++++++|    +++++++||+...+
T Consensus       158 ~Le~~y~~~ms~eea~~la~~aL~~a~~~d~~~~~~~~~~ievavi~k~~~~~~fr~l~~~ei~~~l~  225 (227)
T d1q5qa_         158 AMRESYRADLDLEAAVGIAVNALRQGGAGEGEKRNVDVASLEVAVLDQSRPRRAFRRIAGTALEQLVP  225 (227)
T ss_dssp             HHHHHCCTTCCHHHHHHHHHHHHTTCC--------CCSSCSEEEEEETTSSSCCEEECCHHHHHTTSC
T ss_pred             HHHHhccCCCCHHHHHHHHHHHHHHHhhcccccCCcCcceEEEEEEECCCCccceEEcCHHHHHHHhc
Confidence            9999999999999999999999999987663    456789999999886    79999999998764

>d1iruk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.4e-42  Score=281.70  Aligned_cols=197  Identities=18%  Similarity=0.229  Sum_probs=187.1

Q ss_pred             CceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCHHH
Q 026175           27 GTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKE  106 (242)
Q Consensus        27 g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~~~  106 (242)
                      |||+|||+++||||||+|+|.+.+.++.+++.+|||+|+++++++++|..+|++.+.++++. .++.|++.++.+++++.
T Consensus         1 Mt~ivgi~~kdgVviaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~~G~~aD~~~l~~~~~~-~~~~~~~~~~~~~~~~~   79 (199)
T d1iruk_           1 MEYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQK-NVQLYKMRNGYELSPTA   79 (199)
T ss_dssp             CCCEEEEECSSEEEEEEECCEEETTEEEESSCCCEEECSSSEEEEEEESTTHHHHHHHHHHH-HHHHHHHHHSSCCCHHH
T ss_pred             CeEEEEEEECCEEEEEECCCccCCCeeecCCcceEEEecCcEEEEecccchHHHHHHHHHHH-HhhhhhhhcCCcCcHHH
Confidence            68999999999999999999999999989999999999999999999999999999999998 48899999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCcceEEEEEEEEC-CcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhhcCCCCCHHHHHHH
Q 026175          107 LHSYLTRVMYNRRNKFDPLWNSLVLGGVKN-GQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKL  185 (242)
Q Consensus       107 la~~l~~~~~~~r~~~rP~~vs~lvaG~D~-~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eeai~l  185 (242)
                      +++++++.++.++...+|++++++++|+|. ++|+||.+||.|.+.+.+++|+|+|+.+++++|++.|+++|+++||+++
T Consensus        80 ~~~~l~~~~~~~~~~~~~~~~~~~~aG~d~~~~~~l~~~~~~g~~~~~~~~a~G~gs~~a~~~l~~~~~~~~~~~ea~~l  159 (199)
T d1iruk_          80 AANFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVEL  159 (199)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCEEEEEEEEETTTEEEEEEECTTCCEEECSEEEESHHHHHHHHHHHHHCCTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccCCcceeeeecceeccCCceEEeecccceEEeeeeeeecccchhhhHHHHHhccCCCCHHHHHHH
Confidence            999999988876555789999999999995 6899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcccCCCCcEEEEEEcCCCeEEeCCccccc
Q 026175          186 LEKCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALKT  224 (242)
Q Consensus       186 ~~~~l~~~~~~d~~s~~~i~v~ii~k~g~~~~~~~ei~~  224 (242)
                      +++||+.+.++|..++++++|++|+++|++.+++..++.
T Consensus       160 ~~~al~~~~~~d~~sg~~~~v~vv~~~g~~~~~~~~~~~  198 (199)
T d1iruk_         160 LRKCLEELQKRFILNLPTFSVRIIDKNGIHDLDNISFPK  198 (199)
T ss_dssp             HHHHHHHHHHTBCBCCCCEEEEEEETTEEECCCCBCCCC
T ss_pred             HHHHHHHHHHhcCCcCCceEEEEEcCCCeEEcCCccCCC
Confidence            999999999999999999999999999999998877654

>d1iruj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.9e-42  Score=285.94  Aligned_cols=189  Identities=21%  Similarity=0.335  Sum_probs=178.3

Q ss_pred             ccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCH
Q 026175           25 VTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGP  104 (242)
Q Consensus        25 ~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~  104 (242)
                      -+|+|+|||+++||||||+|+|.+.+.++.+++.+|||+|++|++++++|..+|++.+.++++. +++.|+++++.++++
T Consensus         5 ~nG~Tvigi~~~dgVvlaaD~r~s~g~~~~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~-~~~~~~~~~~~~~~~   83 (204)
T d1iruj_           5 YNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKF-RLNLYELKEGRQIKP   83 (204)
T ss_dssp             SSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECSTTEEEECCSCHHHHHHHHHHHHH-HHHHHHHHSSSCCCH
T ss_pred             eCCceEEEEEECCEEEEEECCCcccCCeeEcCcccEEEEeCCCeEEEeccCchHHHHHHHHHHH-hhhhhhhhcccccch
Confidence            3799999999999999999999999999999999999999999999999999999999999998 588999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCCCcceEEEEEEEEC--CcEEEEEECCCCceee-eCeEEEccchHhhHHHHhhhcCCCCCHHH
Q 026175          105 KELHSYLTRVMYNRRNKFDPLWNSLVLGGVKN--GQKYLGMVSMIGVNFE-DSHVATGFGNHLARPILRDEWHENLSYED  181 (242)
Q Consensus       105 ~~la~~l~~~~~~~r~~~rP~~vs~lvaG~D~--~~p~Ly~idp~G~~~~-~~~~aiG~g~~~a~~~Le~~~~~~~s~ee  181 (242)
                      +.+++++++.+|.++  ++||+|++||||+|+  .+|++|++||.|.... ..+++.|+|+++++++|++.|+++|+.+|
T Consensus        84 ~~~a~~l~~~~~~~~--~~p~~~~~lvaG~D~~~~~~~~~~~d~~g~~~~~~~~~~~G~g~~~~~~~l~~~~~~~ms~~e  161 (204)
T d1iruj_          84 YTLMSMVANLLYEKR--FGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDH  161 (204)
T ss_dssp             HHHHHHHHHHHHTTT--TSCCSCCCEEEEECTTSCCEEEEEECTTCCEEECSSEEEEETTHHHHHHHHHHHCCSSCCHHH
T ss_pred             HHHHHHHHHHHHHhh--hccceeEEEEEEEcCCCCceEEEEecCCCceeeecceEEechhHHHHHHHHHhccccCCCHHH
Confidence            999999999998876  689999999999995  4689999999998655 56799999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCeEE
Q 026175          182 GVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTI  216 (242)
Q Consensus       182 ai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g~~~  216 (242)
                      |++++++||+.+.+||..++++++|++|++||++.
T Consensus       162 a~~l~~~al~~a~~rd~~sg~~~~v~ii~k~gi~~  196 (204)
T d1iruj_         162 LFETISQAMLNAVDRDAVSGMGVIVHIIEKDKITT  196 (204)
T ss_dssp             HHHHHHHHHHHHGGGBTTSCSCEEEEEEESSBEEE
T ss_pred             HHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCEEE
Confidence            99999999999999999999999999999999774

>d1rypj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.5e-42  Score=283.78  Aligned_cols=187  Identities=20%  Similarity=0.258  Sum_probs=176.1

Q ss_pred             cCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCHH
Q 026175           26 TGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPK  105 (242)
Q Consensus        26 ~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~~  105 (242)
                      +|+|+|||+++||||||+|+|.+.+.++..++.+|||++ ++++++++|..+|++.+.++++. .++.|+++++.+++++
T Consensus         7 nG~Tivgi~~~d~VvlaaD~r~~~~~~~~~~~~~Ki~~i-~~i~~~~~G~~~D~~~l~~~~~~-~~~~~~~~~~~~~~~~   84 (204)
T d1rypj_           7 NGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHY-GHVFLGITGLATDVTTLNEMFRY-KTNLYKLKEERAIEPE   84 (204)
T ss_dssp             SCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEEE-TTEEEEEEECHHHHHHHHHHHHH-HHHHHHHHHSSCCCHH
T ss_pred             CCeEEEEEEECCEEEEEEcCCcccCCEeecCcccEEEEc-CCEEEEecCcchHHHHHHHHHHH-HHHHHHHhcCCCCcch
Confidence            799999999999999999999999999999999999999 58999999999999999999998 4889999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCcceEEEEEEEEC--CcEEEEEECCCCceeee-CeEEEccchHhhHHHHhhhcCCCCCHHHH
Q 026175          106 ELHSYLTRVMYNRRNKFDPLWNSLVLGGVKN--GQKYLGMVSMIGVNFED-SHVATGFGNHLARPILRDEWHENLSYEDG  182 (242)
Q Consensus       106 ~la~~l~~~~~~~r~~~rP~~vs~lvaG~D~--~~p~Ly~idp~G~~~~~-~~~aiG~g~~~a~~~Le~~~~~~~s~eea  182 (242)
                      .+++++++.+|.++  .+|++|++|++|+|+  +.|+||++||+|++.++ .++++|+|+.+++++|++.|+++|+++||
T Consensus        85 ~la~~l~~~l~~~~--~~p~~v~~li~G~d~~~g~~~L~~~D~~G~~~~~~~~~~~G~g~~~a~~~l~~~~~~~ms~~ea  162 (204)
T d1rypj_          85 TFTQLVSSSLYERR--FGPYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPEDL  162 (204)
T ss_dssp             HHHHHHHHHHHTTT--TSCCCEEEEEEEECTTTCCEEEEEECTTCCEECCSSEEEEETTHHHHHHHHHHHCCSSCCHHHH
T ss_pred             HHHHHHHHHHHhhc--ccceeeeEEEEEEecCCCcceEEEeCCCCccccccCcEEeecchHHHHHHHHhccccCCCHHHH
Confidence            99999999998876  589999999999983  56999999999998876 47888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccCCCCcEEEEEEcCCCeEE
Q 026175          183 VKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTI  216 (242)
Q Consensus       183 i~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g~~~  216 (242)
                      ++++++||..+.++|..++++++|++|++||++.
T Consensus       163 ~~l~~~al~~a~~~d~~sg~~~~v~ii~kdg~~~  196 (204)
T d1rypj_         163 FETISQALLNAADRDALSGWGAVVYIIKKDEVVK  196 (204)
T ss_dssp             HHHHHHHHHHHHTTBTTSCSCEEEEEEESSCEEE
T ss_pred             HHHHHHHHHHHHHhcCccCCeEEEEEEECCceEE
Confidence            9999999999999999999999999999999664

>d1iru1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1e-40  Score=276.84  Aligned_cols=194  Identities=22%  Similarity=0.347  Sum_probs=182.3

Q ss_pred             ccccc-cCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcC
Q 026175           21 QLPYV-TGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDG   99 (242)
Q Consensus        21 ~~a~~-~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g   99 (242)
                      |+|+. +|+|+|||+++||||||+|+|.+.+.++.+++.+||++|++|++++++|..+|++.+.+++|. +++.++++++
T Consensus         2 f~p~~~nG~Tivai~~~dgVviaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~aG~~~D~~~l~~~~~~-~~~~~~~~~~   80 (213)
T d1iru1_           2 FSPYVFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEA-RLKMYKHSNN   80 (213)
T ss_dssp             CCSCCCCCCEEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHH-HHHHHHHHHS
T ss_pred             CCCccCCCcEEEEEEECCEEEEEECCccccCceeeccccCEEEEcCCCEEEEecCccchHHHHHHHHHH-HHHHHHHhhC
Confidence            66754 899999999999999999999999999999999999999999999999999999999999998 5889999999


Q ss_pred             CCCCHHHHHHHHHHHHHhhcCCCCCcceEEEEEEEE-CCcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhhcC----
Q 026175          100 NSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVK-NGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWH----  174 (242)
Q Consensus       100 ~~i~~~~la~~l~~~~~~~r~~~rP~~vs~lvaG~D-~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~----  174 (242)
                      .+++++.+++.+++.++.++  .+|++++.+++|+| +++|+||.+||.|.+.+++++++|+|+.+++++|++.|.    
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~d~~~~~~l~~~d~~g~~~~~~~~a~G~g~~~a~~~l~~~~~~~~~  158 (213)
T d1iru1_          81 KAMTTGAIAAMLSTILYSRR--FFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNM  158 (213)
T ss_dssp             SCCCHHHHHHHHHHHHHTTT--TSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTTCCSC
T ss_pred             CchhHHHHHHHHHHHHHHHH--hhhcccccceEEEecCCCcEEEecCCcceeeecCeeeecCccHHHHHHHHHhhcccch
Confidence            99999999999999988776  57999999999999 578999999999999999999999999999999998764    


Q ss_pred             -----CCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCeEEe
Q 026175          175 -----ENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTIS  217 (242)
Q Consensus       175 -----~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g~~~~  217 (242)
                           ++||++||++++++||..+.++|..++++++|++|++||++..
T Consensus       159 ~~~~~~~~s~~ea~~~~~~~l~~~~~~d~~sg~~~~v~~i~k~G~~~~  206 (213)
T d1iru1_         159 QNVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGIREE  206 (213)
T ss_dssp             SSCCCCCCCHHHHHHHHHHHHHHHHHHBTTSCSEEEEEEEETTEEEEE
T ss_pred             hcccccCCCHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCEEEE
Confidence                 6899999999999999999999999999999999999998743

>d1q5qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Rhodococcus erythropolis [TaxId: 1833]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Rhodococcus erythropolis [TaxId: 1833]

Probab=100.00  E-value=4.9e-41  Score=281.65  Aligned_cols=198  Identities=20%  Similarity=0.208  Sum_probs=183.2

Q ss_pred             ceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 026175           28 TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKEL  107 (242)
Q Consensus        28 ~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~~~l  107 (242)
                      ||+|||+++||||||+|+|.+++.++.+++.+||++|++|++++++|..+|++.+.++++.. ++.|+++++.++++..+
T Consensus         1 TTivgi~~kdgVvlaaD~r~s~g~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~-~~~~~~~~~~~~~~~~~   79 (224)
T d1q5qh_           1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVE-LEHYEKIEGVPLTFDGK   79 (224)
T ss_dssp             CCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHH-HHHHHHHHSSCCCHHHH
T ss_pred             CeEEEEEECCEEEEEECCCcccCCEeecCCcceEEEeCCcEEEEecccchHHHHHHHHHHHH-hHHHHHhhCCCccHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999984 88899999999999999


Q ss_pred             HHHHHHHHHhh-cCCCCCcceEEEEEEEE------CCcEEEEEECCCCceeee--CeEEEccchHhhHHHHhhhcCCCCC
Q 026175          108 HSYLTRVMYNR-RNKFDPLWNSLVLGGVK------NGQKYLGMVSMIGVNFED--SHVATGFGNHLARPILRDEWHENLS  178 (242)
Q Consensus       108 a~~l~~~~~~~-r~~~rP~~vs~lvaG~D------~~~p~Ly~idp~G~~~~~--~~~aiG~g~~~a~~~Le~~~~~~~s  178 (242)
                      ++.+++.+|.. +..++|+++.++++|++      +++|+||++||+|+..++  +++|+|+|+.+++++||++|+++||
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~d~~~~~~l~~~d~~G~~~~~~~~~~a~GsG~~~a~~~Le~~~~~~mt  159 (224)
T d1q5qh_          80 ANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSD  159 (224)
T ss_dssp             HHHHHHHHHTTHHHHTTTCCEEEEEEEECTTCSSTTSCEEEEEECTTSCEEECCSSEEEESTTHHHHHHHHHHHCCTTCC
T ss_pred             HHHHHHHHHHhhcccccCccceeeEEEeecccccccCCceEEEEEccCcEEEeccceeeecCccHHHHHHHHHhhcccCC
Confidence            99999998654 33478999999999987      358999999999998665  7799999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcccCCCCc-------EEEEEEcCCCeEEeCCccccccc
Q 026175          179 YEDGVKLLEKCMRVLLYRDRSAVNK-------LQIAKITEEGTTISQPYALKTFW  226 (242)
Q Consensus       179 ~eeai~l~~~~l~~~~~~d~~s~~~-------i~v~ii~k~g~~~~~~~ei~~~~  226 (242)
                      .+||++++++||+.+.+||..+|++       +++++++++|++.++++||+...
T Consensus       160 ~~ea~~l~~~al~~a~~rD~~SGg~~~~~~~~~~~~~i~~~g~~~l~~~ei~~~~  214 (224)
T d1q5qh_         160 EETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAGAVHVSEETTSELA  214 (224)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTEEEECCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhccccCCcccccccceEEEEEeCCcEEEcCHHHHHHHH
Confidence            9999999999999999999998874       79999999999999999998743

>d2z3ba1 d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: HslV (ClpQ) protease
species: Bacillus subtilis [TaxId: 1423]

Probab=99.94  E-value=1.6e-27  Score=192.56  Aligned_cols=172  Identities=13%  Similarity=0.051  Sum_probs=127.0

Q ss_pred             cCceEEEEEeCCEEEEEEcCCcccCceeeeC-CcCeEEEecCc-eEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCC
Q 026175           26 TGTSVVALKYKDGILMAADMGGSYGSTIRYK-SVERIKPIGKH-SLLGASGEISDFQELLRNLDELILYDNMWDDGNSLG  103 (242)
Q Consensus        26 ~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~-~~~Ki~~i~~~-i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~  103 (242)
                      ||||+|||+|+||||||+|+|.|+|.++..+ ..+|++.++++ ++++.+|...|.+.+.+.++.. .+.++.     ..
T Consensus         4 ~GTTivai~~~dGVvlAaDtR~S~G~~i~~~~~~~ki~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~-----~~   77 (180)
T d2z3ba1           4 HATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAK-LEEYNG-----NL   77 (180)
T ss_dssp             CCCCEEEEEETTEEEEEECCCEEETTTEEEESCCCCEEEETTTTEEEEECSCHHHHHHHHHHHHHH-HHHTTT-----CH
T ss_pred             CCeEEEEEEECCEEEEEECCcccCCceeEecccceEEEEecccceecccchHHHHHHHHHHHHHHH-HHhhcc-----cc
Confidence            7999999999999999999999998876655 57899999875 8888899999999999888753 333221     11


Q ss_pred             HHHHHHHHHHHH---HhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhhcCCCCCHH
Q 026175          104 PKELHSYLTRVM---YNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYE  180 (242)
Q Consensus       104 ~~~la~~l~~~~---~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~e  180 (242)
                      ...+........   +.++ ...++.+....      ++.++..++.+.....++.|+|+|+.+|+++|+..|+++|+.+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~a~GSGs~~A~g~l~~~~~~~~s~~  150 (180)
T d2z3ba1          78 KRAAVELAKEWRSDKVLRK-LEAMLIVMNQD------TLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKKHAGESM  150 (180)
T ss_dssp             HHHHHHHHHHHHHCTTGGG-CCCCEEEECSS------CEEEECTTCCEECCSSSEEEESTTHHHHHHHHHHHHHHHGGGC
T ss_pred             chhHHHHHHHHhHHHHHHH-hhcceeeeecc------ccccccCCceeecccccEEEEcCchHHHHHHHHHHhhcCCCcc
Confidence            222222222211   1111 12233333333      3444444444444445589999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcccCCCCcEEEEEEc
Q 026175          181 DGVKLLEKCMRVLLYRDRSAVNKLQIAKIT  210 (242)
Q Consensus       181 eai~l~~~~l~~~~~~d~~s~~~i~v~ii~  210 (242)
                      ||++++++||+.|.++|..++++++|.+|.
T Consensus       151 eA~~l~~~Al~~A~e~dvyT~~~~~~~~i~  180 (180)
T d2z3ba1         151 SASEIARAALETAGEICVYTNDQIILEELE  180 (180)
T ss_dssp             CHHHHHHHHHHHHHHHCTTCCSCCEEEEEC
T ss_pred             CHHHHHHHHHHHHHhhcEEcCCcEEEEEeC
Confidence            999999999999999999999999998773

>d1m4ya_ d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: HslV (ClpQ) protease
species: Thermotoga maritima [TaxId: 2336]

Probab=99.93  E-value=8.7e-26  Score=180.46  Aligned_cols=170  Identities=15%  Similarity=0.116  Sum_probs=132.7

Q ss_pred             ceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 026175           28 TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKEL  107 (242)
Q Consensus        28 ~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~~~l  107 (242)
                      ||+|||+++||||||+|+|.|.|.++.+++.+||++|+++++++.+|..+|.+.+.+.+... .+.+.  .+.   ....
T Consensus         1 TTivav~~~~gVviAaDtR~S~G~~i~~r~~~Ki~~i~~~~~~~~~g~~ad~~~~~~~~~~~-~~~~~--~~~---~~~~   74 (171)
T d1m4ya_           1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEA-KLREW--GGN---LTKA   74 (171)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHH-HHHHT--TTC---HHHH
T ss_pred             CeEEEEEECCEEEEEECCCcccCCEEEeCCcceEEEecCCcEEEEEeechhhHHHHHHHHHH-HHHHh--hcc---chhh
Confidence            79999999999999999999999999999999999999999999999999998888776652 22221  221   1222


Q ss_pred             HHHHHHHHHhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhhcC-CCCCHHHHHHHH
Q 026175          108 HSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWH-ENLSYEDGVKLL  186 (242)
Q Consensus       108 a~~l~~~~~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~-~~~s~eeai~l~  186 (242)
                      ....+..+....   .++....++.+.++++|+++..|+.|.....++.|+|||+.+|++.|+.+++ ++|+   |.+++
T Consensus        75 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~l~~~~~~~~~~---a~el~  148 (171)
T d1m4ya_          75 AVELAKDWRTDR---VLRRLEALLLVADKENIFIISGNGEVIQPDDDAAAIGSGGPYALAAAKALLRNTDLS---AREIV  148 (171)
T ss_dssp             HHHHHHHHHHCT---TGGGCCCEEEEECSSCEEEECTTSCEECCSSSEEEESTTHHHHHHHHHHHHHHCCCC---HHHHH
T ss_pred             HHHHHHHHHHhh---hhcccccccceecCCcceEEecCCceeeecCCEEEEcchHHHHHHHHHhhccCCCCC---HHHHH
Confidence            222222221111   1122223444567889999999999999999999999999999999998765 5776   66789


Q ss_pred             HHHHHHHHhcccCCCCcEEEEEE
Q 026175          187 EKCMRVLLYRDRSAVNKLQIAKI  209 (242)
Q Consensus       187 ~~~l~~~~~~d~~s~~~i~v~ii  209 (242)
                      ++||+.|.++|..++++++|..|
T Consensus       149 ~~Ai~~A~e~dvyTg~~~~i~~~  171 (171)
T d1m4ya_         149 EKAMTIAGEICIYTNQNIVIEEV  171 (171)
T ss_dssp             HHHHHHHHHHCTTCCSCCEEEEC
T ss_pred             HHHHHHHHhhceEcCCcEEEEEC
Confidence            99999999999999999998653

>d1g3ka_ d.153.1.4 (A:) HslV (ClpQ) protease {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: HslV (ClpQ) protease
species: Haemophilus influenzae [TaxId: 727]

Probab=99.92  E-value=2.8e-25  Score=177.89  Aligned_cols=171  Identities=15%  Similarity=0.109  Sum_probs=128.6

Q ss_pred             ceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCc-eEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCHHH
Q 026175           28 TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKH-SLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKE  106 (242)
Q Consensus        28 ~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~-i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~~~  106 (242)
                      ||+|||+++||||||+|+|.|.|.++.+++.+||++|+++ ++++.+|...+.+.+.+..+. ..+.  +    ......
T Consensus         1 TTivai~~~dGVVlAaDtRaS~G~~i~~r~~~Ki~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~----~~~~~~   73 (173)
T d1g3ka_           1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFER-KLEM--H----QGHLLK   73 (173)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHH-HHHH--T----TTCHHH
T ss_pred             CeEEEEEECCEEEEEECCCcccCCEeEcCCcceEEEecCCcEEEEeeehhHhHHHHHHHHHH-HHHh--h----cCcchh
Confidence            7999999999999999999999999999999999999887 455556666555555444432 1211  1    223333


Q ss_pred             HHHHHHHHHHhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhhcCCCCCHHHHHHHH
Q 026175          107 LHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLL  186 (242)
Q Consensus       107 la~~l~~~~~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eeai~l~  186 (242)
                      .+..+...++..+  +.+.....++++.+++++.++..|+.|.+.+.++.|+|||+.+|++.|+.+++  ++.+||.+++
T Consensus        74 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~GSGs~~A~~~l~~~~~--~~~~~A~ela  149 (173)
T d1g3ka_          74 SAVELAKDWRTDR--ALRKLEAMLIVADEKESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALVE--NTELSAHEIV  149 (173)
T ss_dssp             HHHHHHHHHHHST--TGGGCCCEEEEECSSCEEEEETTTEEECCCTTCEEEESTTHHHHHHHHHHHHH--HCCCCHHHHH
T ss_pred             HHHHHHHHHHHhh--hhcccccccccccCCCcceecccCceEEecCCCEEEecchHHHHHHHHHHhhh--cCCCCHHHHH
Confidence            3444444433322  22333444555545789999999999999999999999999999999998885  3344688899


Q ss_pred             HHHHHHHHhcccCCCCcEEEEEE
Q 026175          187 EKCMRVLLYRDRSAVNKLQIAKI  209 (242)
Q Consensus       187 ~~~l~~~~~~d~~s~~~i~v~ii  209 (242)
                      ++||+.|.++|..++++++|..|
T Consensus       150 ~~Ai~~Aae~dvyTgd~~~i~~~  172 (173)
T d1g3ka_         150 EKSLRIAGDICVFTNTNFTIEEL  172 (173)
T ss_dssp             HHHHHHHHHHCTTCCSCCEEEEE
T ss_pred             HHHHHHHHhhcEEcCCcEEEEEC
Confidence            99999999999999999998765