Citrus Sinensis ID: 026186

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240--
Protein Sequence
MSTQFRASYYQHNGSSITTAPSLHSCSSFIISKLPDHPLSGNKRSLLLGTSLSFNSNKETTSVIRRRKRKNFEHGIVASSSNVATPIWESWKPQKGSSNPSLSDILWPSAGAFAAMAILGKMDQILAPKGFSITIAPLGAVCAVLFATPSTPAARKYNVFMSQIGCAAIGVLAFSIFGPGWLARSAGLAASIAFMIYARAPHPPAASLPILFIDGVKLHSLNFWYALFPGAAGCIILCLIVS
Secondary Structure (PSIPRED)
cccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEccHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHcccccccccccHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEccccccccccccccccccccccccccccccccccEccccccHHHHHccccccHHHHHHcccccEEEEEcccccccccHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEcccHHEEEEEccccccccccccEHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEccHHHHHcccEEEEcHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MSTQFRASYyqhngssittapslhscssfiisklpdhplsgnkrslllgtslsfnsnketTSVIRRRKrknfehgivasssnvatpiweswkpqkgssnpslsdilwpsAGAFAAMAILGKMDqilapkgfsitiAPLGAVCAVLfatpstpaarKYNVFMSQIGCAAIGVLAFSIFGPGWLARSAGLAASIAFMIYaraphppaaslpilfidgvklhSLNFWYALFPGAAGCIILCLIVS
Flexible Loop (DISEMBL)
MSTQFRASYYQHNGSSITTAPSLHSCSSFIISKLPDHPLSGNKRSLllgtslsfnsnkettsvirrrkrknfehgivasssnvatpiweSWKPQKGSSNPSLSDILWPSAGAFAAMAILGKMDQILAPKGFSITIAPLGAVCAVLFATPSTPAARKYNVFMSQIGCAAIGVLAFSIFGPGWLARSAGLAASIAFMIYARAPHPPAASLPILFIDGVKLHSLNFWYALFPGAAGCIILCLIVS
Low Complexity Region (SEG)
MSTQFRASYYQHNGSSITTAPSLHSCSSFIISKLPDHPLSGNKRSLLLGTSLSFNSNKETTSVIRRRKRKNFEHGIVASSSNVATPIWESWKPQKGSSNPSLSDILWPSAGAFAAMAILGKMDQILAPKGFSITIAPLGAVCAVLFATPSTPAARKYNVFMSQIGCAAIGVLAFSIFGPGWLARSAGLAASIAFMIYARAPHPPAASLPILFIDGVKLHSLNFWYALFPGAAGCIILCLIVS
Disordered region (IsUnstruct)
*************************CSSFIIS******************************************GIV*****VATPIWES************SDILWPSAGAFAAMAILGKMDQILAPKGFSITIAPLGAVCAVLFATPSTPAARKYNVFMSQIGCAAIGVLAFSIFGPGWLARSAGLAASIAFMIYARAPHPPAASLPILFIDGVKLHSLNFWYALFPGAAGCIILCLIV*
Disordered Region (DISOPRED)
************************SCSSFIIS***********************************************************************DILWPSAGAFAAMAILGKMDQILAPKGFSITIAPLGAVCAVLFATPSTPAARKYNVFMSQIGCAAIGVLAFSIFGPGWLARSAGLAASIAFMIYARAPHPPAASLPILFIDGVKLHSLNFWYALFPGAAGCIILCLIVS
Disordered Region (DISEMBL)
********YYQHNGSSITTAPSLHSCSSFIISKLPDHPLSGNKRSLLLGTSLSFNSNKETTSVIRRRKRKNFEHGIVASSSNVATPIWES**********SLSDILWPSAGAFAAMAILGKMDQILAPKGFSITIAPLGAVCAVLFATPSTPAARKYNVFMSQIGCAAIGVLAFSIFGPGWLARSAGLAASIAFMIYARAPHPPAASLPILFIDGVKLHSLNFWYALFPGAAGCIILCLIVS
Disordered Region (DISPRO)
*STQFRASYYQHNGSSITTAPSLHSCSSFIISKLPDHPLSGNKRSLLLGTSLSFNSNKETTSVIRRRKRKNFEHGIVASSSNVATPIWESWKPQKGSSNPSLSDILWPSAGAFAAMAILGKMDQILAPKGFSITIAPLGAVCAVLFATPSTPAARKYNVFMSQIGCAAIGVLAFSIFGPGWLARSAGLAASIAFMIYARAPHPPAASLPILFIDGVKLHSLNFWYALFPGAAGCIILCLIVS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHi
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSTQFRASYYQHNGSSITTAPSLHSCSSFIISKLPDHPLSGNKRSLLLGTSLSFNSNKETTSVIRRRKRKNFEHGIVASSSNVATPIWESWKPQKGSSNPSLSDILWPSAGAFAAMAILGKMDQILAPKGFSITIAPLGAVCAVLFATPSTPAARKYNVFMSQIGCAAIGVLAFSIFGPGWLARSAGLAASIAFMIYARAPHPPAASLPILFIDGVKLHSLNFWYALFPGAAGCIILCLIVS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	242	2.2.26 [Sep-21-2011]
Q55EF8	285	Transmembrane protein DDB	yes	no	0.578	0.491	0.213	0.0005

>sp|Q55EF8|Y9096_DICDI Transmembrane protein DDB_G0269096 OS=Dictyostelium discoideum GN=DDB_G0269096 PE=4 SV=1

 Score = 45.1 bits (105), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/145 (21%), Positives = 62/145 (42%), Gaps = 5/145 (3%)

Query: 100 PSLSDILWPSAGAFAAMAILGKMDQILAPKG-FSITIAPLGAVCAVLFATPSTPAARKYN 158
           P L +I W    +F  + +L  +    A      + I    A   ++F  P +P A+  N
Sbjct: 122 PDLEEIGWTWLASFTGILVLALIHYREALDAQMQVLIGSFAASAVIIFGVPKSPLAQPRN 181

Query: 159 VFMSQIGCAAIG--VLAFSIFGPGWLARSAGLAASIAFMI--YARAPHPPAASLPILFID 214
           + M     A +G  +    ++       +  LA S++ M+  +  + HPP  +  ++ + 
Sbjct: 182 LIMGHFLSAVVGSVIRVALVYTNANFEVACALAVSLSIMLMQFTNSLHPPGGATALICVM 241

Query: 215 GVKLHSLNFWYALFPGAAGCIILCL 239
           GV+     F++   P  +G +I+ L
Sbjct: 242 GVEQRWRGFYFIFVPILSGALIMLL 266

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	242
225456660	242	PREDICTED: uncharacterized protein LOC10	0.946	0.946	0.641	6e-76
255540905	282	conserved hypothetical protein [Ricinus	0.987	0.847	0.614	7e-75
297734031	225	unnamed protein product [Vitis vinifera]	0.805	0.866	0.722	1e-74
224135645	246	predicted protein [Populus trichocarpa]	0.946	0.930	0.622	5e-72
351721996	234	uncharacterized protein LOC100527136 [Gl	0.785	0.811	0.670	3e-66
283132361	245	HPP domain containing protein [Lotus jap	0.714	0.706	0.682	6e-64
357477397	229	HPP domain containing protein [Medicago	0.764	0.807	0.626	1e-62
21593348	243	unknown [Arabidopsis thaliana]	0.818	0.814	0.610	4e-62
15241937	243	HPP integral membrane domain-containing	0.818	0.814	0.610	4e-62
297815980	252	integral membrane HPP family protein [Ar	0.822	0.789	0.604	2e-60

>gi|225456660|ref|XP_002267093.1| PREDICTED: uncharacterized protein LOC100260399 isoform 1 [Vitis vinifera]

 Score =  289 bits (740), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 154/240 (64%), Positives = 176/240 (73%), Gaps = 11/240 (4%)

Query: 1   MSTQFRASYYQHNGSSITTAPSLHSCSSFIISKLPDHPLSGNKRSLLLGTSLSFNSNKET 60
           M  Q +A ++ H+   +   P L        S L     +G K +L L  SL  +    T
Sbjct: 1   MGVQLQAYFHHHHSRIMMAQPPLSITCGSSNSLL----FNGKKATLRLDGSLGLH---FT 53

Query: 61  TSVIRRRKRKNFEHGIVASSSNVATPIWESWKPQKGSSNPSLSDILWPSAGAFAAMAILG 120
           +  I RR+R   + GIVASS NVA P W+ WKP+K S+ PSLSDILWPSAGAFAAMAILG
Sbjct: 54  SRKIDRRRR---DFGIVASS-NVAAPFWDGWKPEKSSAAPSLSDILWPSAGAFAAMAILG 109

Query: 121 KMDQILAPKGFSITIAPLGAVCAVLFATPSTPAARKYNVFMSQIGCAAIGVLAFSIFGPG 180
           KMDQ LA KG S+TIAPLGAVCAVLFATPS+PAARKYN+FM+QIGCAAIGVLAFS+ GPG
Sbjct: 110 KMDQTLASKGISMTIAPLGAVCAVLFATPSSPAARKYNMFMAQIGCAAIGVLAFSLLGPG 169

Query: 181 WLARSAGLAASIAFMIYARAPHPPAASLPILFIDGVKLHSLNFWYALFPGAAGCIILCLI 240
           WLARS  L ASIAFMIY R+ HPPAASLP+LFIDG K H LNFWYALFPGA  CI+LCLI
Sbjct: 170 WLARSTALGASIAFMIYTRSTHPPAASLPLLFIDGAKFHHLNFWYALFPGATACILLCLI 229

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540905|ref|XP_002511517.1| conserved hypothetical protein [Ricinus communis] gi|223550632|gb|EEF52119.1| conserved hypothetical protein [Ricinus communis]

 Score =  286 bits (731), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 158/257 (61%), Positives = 178/257 (69%), Gaps = 18/257 (7%)

Query: 1   MSTQFRASYYQHNGSSITTAPSLHSCSSFIISKLPDHPLSGNKRSLLLGTSLSFNSNKET 60
           M  Q  A+YYQH        P+L    S   + L   P+ G   S L         +   
Sbjct: 1   MGMQVAANYYQHK---CFMTPTLLPIPSPKFTSLRFSPILGASSSFLDFKKKVLQKSVGF 57

Query: 61  TSVIRRRKRKNFEHGIVASSSNVATPIWESWKPQKGSSN-PSLSDILWPSAGAFAAMAIL 119
           +S   R++  N    +VASSSNVA P W SW P+K SS+ PS SDI WPSAGAFAAMAIL
Sbjct: 58  SSFQDRKRSSNGRTAVVASSSNVAAPFWGSWMPEKTSSSAPSFSDIFWPSAGAFAAMAIL 117

Query: 120 GKMDQILAPKGFSITIAPLGAVCAVLFATPSTPAARKYNVFMSQIGCAAIGVLAFSIFGP 179
           G++DQILAPKG S+TIAPLGAVCAVLFATPS+PAA+KYN+FM+QIGCAAIGVLAFSI GP
Sbjct: 118 GRIDQILAPKGISMTIAPLGAVCAVLFATPSSPAAQKYNMFMAQIGCAAIGVLAFSICGP 177

Query: 180 GWLARSAGLAASIAFMIYARAPHPP--------------AASLPILFIDGVKLHSLNFWY 225
           GW ARSA LAASIAFMI  R+ HPP              AASLP+LFIDGVKLH LNFWY
Sbjct: 178 GWFARSAALAASIAFMISTRSTHPPGSHSELLLFMNQRLAASLPLLFIDGVKLHHLNFWY 237

Query: 226 ALFPGAAGCIILCLIVS 242
           ALFPGAAGCIILCLIVS
Sbjct: 238 ALFPGAAGCIILCLIVS 254

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734031|emb|CBI15278.3| unnamed protein product [Vitis vinifera]

 Score =  285 bits (729), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 146/202 (72%), Positives = 163/202 (80%), Gaps = 7/202 (3%)

Query: 39  LSGNKRSLLLGTSLSFNSNKETTSVIRRRKRKNFEHGIVASSSNVATPIWESWKPQKGSS 98
            +G K +L L  SL  +    T+  I RR+R   + GIVASS NVA P W+ WKP+K S+
Sbjct: 18  FNGKKATLRLDGSLGLH---FTSRKIDRRRR---DFGIVASS-NVAAPFWDGWKPEKSSA 70

Query: 99  NPSLSDILWPSAGAFAAMAILGKMDQILAPKGFSITIAPLGAVCAVLFATPSTPAARKYN 158
            PSLSDILWPSAGAFAAMAILGKMDQ LA KG S+TIAPLGAVCAVLFATPS+PAARKYN
Sbjct: 71  APSLSDILWPSAGAFAAMAILGKMDQTLASKGISMTIAPLGAVCAVLFATPSSPAARKYN 130

Query: 159 VFMSQIGCAAIGVLAFSIFGPGWLARSAGLAASIAFMIYARAPHPPAASLPILFIDGVKL 218
           +FM+QIGCAAIGVLAFS+ GPGWLARS  L ASIAFMIY R+ HPPAASLP+LFIDG K 
Sbjct: 131 MFMAQIGCAAIGVLAFSLLGPGWLARSTALGASIAFMIYTRSTHPPAASLPLLFIDGAKF 190

Query: 219 HSLNFWYALFPGAAGCIILCLI 240
           H LNFWYALFPGA  CI+LCLI
Sbjct: 191 HHLNFWYALFPGATACILLCLI 212

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135645|ref|XP_002322125.1| predicted protein [Populus trichocarpa] gi|222869121|gb|EEF06252.1| predicted protein [Populus trichocarpa]

 Score =  276 bits (706), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 152/244 (62%), Positives = 178/244 (72%), Gaps = 15/244 (6%)

Query: 1   MSTQFRASYYQHNGSSITTAPSLHSCSSFIISKL--PDHPLSGNKRSL-LLGTSLSFNSN 57
           M  Q RASY+ H  + +     + S +  + S    P    S NK +L  L   LSF S+
Sbjct: 1   MGMQVRASYHHHQNACMPPTLPVPSTALSLCSSSLSPFIRSSSNKINLERLSPGLSFFSS 60

Query: 58  KETTSVIRRRKRKNFEHGIVASSSNVATPIWESWKPQKG-SSNPSLSDILWPSAGAFAAM 116
           K T +          +HG+VASS NV+ P+W+SWKP    +S+PS SDI WPSAGAFAAM
Sbjct: 61  KITRT----------KHGVVASS-NVSAPLWDSWKPDNTPASSPSFSDIFWPSAGAFAAM 109

Query: 117 AILGKMDQILAPKGFSITIAPLGAVCAVLFATPSTPAARKYNVFMSQIGCAAIGVLAFSI 176
           AI GKMDQILAPKG S+TIAPLGAV AVLF TPS+P ARKYN+FM+QIGCAAIGV+AFS+
Sbjct: 110 AIFGKMDQILAPKGISMTIAPLGAVSAVLFVTPSSPGARKYNMFMAQIGCAAIGVIAFSL 169

Query: 177 FGPGWLARSAGLAASIAFMIYARAPHPPAASLPILFIDGVKLHSLNFWYALFPGAAGCII 236
           FGP WLARS  LAASIAFM+Y R+ HPPAASLP+LFIDG + H LNFWYALFPGAAGCII
Sbjct: 170 FGPSWLARSVALAASIAFMVYTRSTHPPAASLPLLFIDGARFHHLNFWYALFPGAAGCII 229

Query: 237 LCLI 240
           LCLI
Sbjct: 230 LCLI 233

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721996|ref|NP_001235437.1| uncharacterized protein LOC100527136 [Glycine max] gi|255631634|gb|ACU16184.1| unknown [Glycine max]

 Score =  257 bits (657), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 130/194 (67%), Positives = 152/194 (78%), Gaps = 4/194 (2%)

Query: 50  TSLSFNSNKETTSVI--RRRKRKNFEHGIVASSSNVATP-IWESWKPQKGSSNPSLSDIL 106
           +SL FN+  +   ++     K +   HGIVASS NVA+P IW+ WKP K  S PSLSDIL
Sbjct: 29  SSLCFNTFIKHKGLVLDSNHKGRRRGHGIVASS-NVASPSIWDDWKPVKAPSTPSLSDIL 87

Query: 107 WPSAGAFAAMAILGKMDQILAPKGFSITIAPLGAVCAVLFATPSTPAARKYNVFMSQIGC 166
           WPSAGAFAAMAILGKMDQ+LAPKG SI  AP GAV  +LFATP+ P ARKYNVFM+QIGC
Sbjct: 88  WPSAGAFAAMAILGKMDQLLAPKGLSIAFAPFGAVSTILFATPTAPTARKYNVFMAQIGC 147

Query: 167 AAIGVLAFSIFGPGWLARSAGLAASIAFMIYARAPHPPAASLPILFIDGVKLHSLNFWYA 226
           AAIGVLA +IFGPGWLARSA +AAS+A+MI   + HPPAAS+P+LFIDG K H LNFWYA
Sbjct: 148 AAIGVLALTIFGPGWLARSASIAASVAYMIITNSVHPPAASMPLLFIDGPKFHHLNFWYA 207

Query: 227 LFPGAAGCIILCLI 240
           LFPGAA C +L ++
Sbjct: 208 LFPGAAACTLLTMV 221

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|283132361|dbj|BAI63586.1| HPP domain containing protein [Lotus japonicus] gi|388512863|gb|AFK44493.1| unknown [Lotus japonicus]

 Score =  249 bits (636), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 118/173 (68%), Positives = 142/173 (82%)

Query: 68  KRKNFEHGIVASSSNVATPIWESWKPQKGSSNPSLSDILWPSAGAFAAMAILGKMDQILA 127
           KR+  +H I ASS   +  IW+ WKP K SS PS S+ILWPSAGAF AMA+LGK+DQ+LA
Sbjct: 60  KRRRGQHVIQASSEFASQSIWDDWKPPKASSTPSFSEILWPSAGAFVAMAMLGKLDQLLA 119

Query: 128 PKGFSITIAPLGAVCAVLFATPSTPAARKYNVFMSQIGCAAIGVLAFSIFGPGWLARSAG 187
           PKG SIT APLGAV A+LFATP+ P+ARKY++FMSQIGCA IGVLA +IFGPG LA+SA 
Sbjct: 120 PKGLSITTAPLGAVSALLFATPNAPSARKYSIFMSQIGCAVIGVLALTIFGPGLLAKSAS 179

Query: 188 LAASIAFMIYARAPHPPAASLPILFIDGVKLHSLNFWYALFPGAAGCIILCLI 240
           +AA +A+MIY    HPPA ++P++FIDGVKLH LNFWYAL+PGAA CI+LCLI
Sbjct: 180 VAACVAYMIYTGTVHPPAVAMPLIFIDGVKLHHLNFWYALYPGAACCILLCLI 232

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357477397|ref|XP_003608984.1| HPP domain containing protein [Medicago truncatula] gi|355510039|gb|AES91181.1| HPP domain containing protein [Medicago truncatula]

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 121/193 (62%), Positives = 152/193 (78%), Gaps = 8/193 (4%)

Query: 53  SFNSNKETTSVIRR----RKRKNFEHGIVASSSNVATP-IWESWKPQKGSSNPSLSDILW 107
           SF   K+   ++      + R+N    ++ +SS+VA+P IWE+ KP K SS  SLSDILW
Sbjct: 27  SFTPKKKNKRLVLDYLGLKGRRNL---LIKASSDVASPSIWENLKPPKSSSTHSLSDILW 83

Query: 108 PSAGAFAAMAILGKMDQILAPKGFSITIAPLGAVCAVLFATPSTPAARKYNVFMSQIGCA 167
           PSAGAFAAMAILGK+DQ+L PKG SIT+APLGAV A+LFA+PS P+ARKY++FM+QIGCA
Sbjct: 84  PSAGAFAAMAILGKLDQLLTPKGLSITVAPLGAVSALLFASPSAPSARKYSMFMAQIGCA 143

Query: 168 AIGVLAFSIFGPGWLARSAGLAASIAFMIYARAPHPPAASLPILFIDGVKLHSLNFWYAL 227
           AIGVLAF+IFGPG LA+SA +AA IA+MIY  + HPPA S+P+LFID +K   L+FWY L
Sbjct: 144 AIGVLAFAIFGPGLLAKSASVAACIAYMIYTDSVHPPAVSMPLLFIDAIKFQQLSFWYVL 203

Query: 228 FPGAAGCIILCLI 240
           +PG AGCI+LCLI
Sbjct: 204 YPGVAGCILLCLI 216

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21593348|gb|AAM65297.1| unknown [Arabidopsis thaliana]

 Score =  243 bits (621), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 124/203 (61%), Positives = 160/203 (78%), Gaps = 5/203 (2%)

Query: 42  NKRSLLLGTSLSFNSNKETTSVIRRRKRKNFEHGIVASSSNVATPIWESWKPQKGSSNPS 101
           ++ SL + T   F    +T + +  R+R +    +VAS+ N+  P W+SWKP K ++  +
Sbjct: 33  SRHSLGISTYDEFLKQIKTPATVNHRRRVS---TVVASAGNLTAPSWDSWKPDKTAAATA 89

Query: 102 L--SDILWPSAGAFAAMAILGKMDQILAPKGFSITIAPLGAVCAVLFATPSTPAARKYNV 159
           L  SD++WP+AGAFAAMA+LG+MDQ+L+PKG S+++APLGAV A+LF TPS PAARKYN+
Sbjct: 90  LLLSDVIWPAAGAFAAMALLGRMDQMLSPKGISMSVAPLGAVSAILFITPSAPAARKYNI 149

Query: 160 FMSQIGCAAIGVLAFSIFGPGWLARSAGLAASIAFMIYARAPHPPAASLPILFIDGVKLH 219
           F++QIGCAAIGV+AFS+FGPGWLARS  LAASIAFM+  RA HPPAASLP++FIDG K H
Sbjct: 150 FLAQIGCAAIGVVAFSVFGPGWLARSVALAASIAFMVITRANHPPAASLPLMFIDGAKFH 209

Query: 220 SLNFWYALFPGAAGCIILCLIVS 242
            LNFWYALFPGAA C+ILCL+ S
Sbjct: 210 HLNFWYALFPGAAACVILCLLQS 232

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15241937|ref|NP_201078.1| HPP integral membrane domain-containing protein [Arabidopsis thaliana] gi|26449514|dbj|BAC41883.1| unknown protein [Arabidopsis thaliana] gi|124301076|gb|ABN04790.1| At5g62720 [Arabidopsis thaliana] gi|332010264|gb|AED97647.1| HPP integral membrane domain-containing protein [Arabidopsis thaliana]

 Score =  243 bits (620), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 124/203 (61%), Positives = 160/203 (78%), Gaps = 5/203 (2%)

Query: 42  NKRSLLLGTSLSFNSNKETTSVIRRRKRKNFEHGIVASSSNVATPIWESWKPQKGSSNPS 101
           ++ SL + T   F    +T + +  R+R +    +VAS+ N+  P W+SWKP K ++  +
Sbjct: 33  SRHSLGISTYDEFLKQIKTPATVNHRRRVS---TVVASAGNLTAPSWDSWKPDKTAAATA 89

Query: 102 L--SDILWPSAGAFAAMAILGKMDQILAPKGFSITIAPLGAVCAVLFATPSTPAARKYNV 159
           L  SD++WP+AGAFAAMA+LG+MDQ+L+PKG S+++APLGAV A+LF TPS PAARKYN+
Sbjct: 90  LLLSDVIWPAAGAFAAMALLGRMDQMLSPKGISMSVAPLGAVSAILFITPSAPAARKYNI 149

Query: 160 FMSQIGCAAIGVLAFSIFGPGWLARSAGLAASIAFMIYARAPHPPAASLPILFIDGVKLH 219
           F++QIGCAAIGV+AFS+FGPGWLARS  LAASIAFM+  RA HPPAASLP++FIDG K H
Sbjct: 150 FLAQIGCAAIGVVAFSVFGPGWLARSVALAASIAFMVITRANHPPAASLPLMFIDGAKFH 209

Query: 220 SLNFWYALFPGAAGCIILCLIVS 242
            LNFWYALFPGAA C+ILCL+ S
Sbjct: 210 HLNFWYALFPGAAACVILCLLQS 232

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297815980|ref|XP_002875873.1| integral membrane HPP family protein [Arabidopsis lyrata subsp. lyrata] gi|297321711|gb|EFH52132.1| integral membrane HPP family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 127/210 (60%), Positives = 158/210 (75%), Gaps = 11/210 (5%)

Query: 41  GNKRSLLLGTSLSFNSNKETTSVIRRRKRKNFEHGIVASSSNVATPI----------WES 90
           G KR   LG S S++   + +    R  R +     V+ S+ V+ P+          WE+
Sbjct: 31  GFKRHNFLGVS-SYDLCIDESVRHMRSLRSSSNRWPVSKSAGVSMPVASSDDFPAVSWET 89

Query: 91  WKPQKGSSNPSLSDILWPSAGAFAAMAILGKMDQILAPKGFSITIAPLGAVCAVLFATPS 150
           WKP+K +  PSLSD++WP+AGAFAAMAILG++DQ+L P+G S+++APLGAV A+LF TPS
Sbjct: 90  WKPEKTTVAPSLSDVIWPAAGAFAAMAILGRIDQMLNPRGISMSVAPLGAVSAILFITPS 149

Query: 151 TPAARKYNVFMSQIGCAAIGVLAFSIFGPGWLARSAGLAASIAFMIYARAPHPPAASLPI 210
           +PAARKYN+F +QIGCAAIGVLAFS+FGPGWLARS  LAASIAFM+  RA HPPAASLP+
Sbjct: 150 SPAARKYNMFTAQIGCAAIGVLAFSVFGPGWLARSTALAASIAFMVITRANHPPAASLPL 209

Query: 211 LFIDGVKLHSLNFWYALFPGAAGCIILCLI 240
           LFIDG KLH LNFWYALFPGAA CI+LC +
Sbjct: 210 LFIDGAKLHKLNFWYALFPGAAACILLCFL 239

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	242
TAIR|locus:2170673	243	AT5G62720 "AT5G62720" [Arabido	0.818	0.814	0.610	5.8e-66
TAIR|locus:2097945	252	AT3G47980 "AT3G47980" [Arabido	0.888	0.853	0.594	4.7e-64
UNIPROTKB|Q481P2	152	CPS_2511 "HPP family protein"	0.504	0.802	0.310	3.5e-11
TIGR_CMR|CPS_2511	152	CPS_2511 "HPP family protein"	0.504	0.802	0.310	3.5e-11
UNIPROTKB|Q81UC5	184	BAS0895 "Uncharacterized prote	0.652	0.858	0.252	4.9e-09
TIGR_CMR|BA_0953	184	BA_0953 "conserved hypothetica	0.652	0.858	0.252	4.9e-09
UNIPROTKB|Q8EH38	159	SO_1392 "Membrane protein, HPP	0.549	0.836	0.264	6.5e-09
TIGR_CMR|SO_1392	159	SO_1392 "conserved hypothetica	0.549	0.836	0.264	6.5e-09
DICTYBASE|DDB_G0273707	311	DDB_G0273707 "HPP family prote	0.764	0.594	0.204	3.2e-06
DICTYBASE|DDB_G0273361	311	DDB_G0273361 "HPP family prote	0.764	0.594	0.204	3.2e-06

TAIR|locus:2170673 AT5G62720 "AT5G62720" [Arabidopsis thaliana (taxid:3702)]

 Score = 671 (241.3 bits), Expect = 5.8e-66, P = 5.8e-66
 Identities = 124/203 (61%), Positives = 160/203 (78%)

Query:    42 NKRSLLLGTSLSFNSNKETTSVIRRRKRKNFEHGIVASSSNVATPIWESWKPQKGSSNPS 101
             ++ SL + T   F    +T + +  R+R +    +VAS+ N+  P W+SWKP K ++  +
Sbjct:    33 SRHSLGISTYDEFLKQIKTPATVNHRRRVST---VVASAGNLTAPSWDSWKPDKTAAATA 89

Query:   102 L--SDILWPSAGAFAAMAILGKMDQILAPKGFSITIAPLGAVCAVLFATPSTPAARKYNV 159
             L  SD++WP+AGAFAAMA+LG+MDQ+L+PKG S+++APLGAV A+LF TPS PAARKYN+
Sbjct:    90 LLLSDVIWPAAGAFAAMALLGRMDQMLSPKGISMSVAPLGAVSAILFITPSAPAARKYNI 149

Query:   160 FMSQIGCAAIGVLAFSIFGPGWLARSAGLAASIAFMIYARAPHPPAASLPILFIDGVKLH 219
             F++QIGCAAIGV+AFS+FGPGWLARS  LAASIAFM+  RA HPPAASLP++FIDG K H
Sbjct:   150 FLAQIGCAAIGVVAFSVFGPGWLARSVALAASIAFMVITRANHPPAASLPLMFIDGAKFH 209

Query:   220 SLNFWYALFPGAAGCIILCLIVS 242
              LNFWYALFPGAA C+ILCL+ S
Sbjct:   210 HLNFWYALFPGAAACVILCLLQS 232

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016021 "integral to membrane" evidence=ISS

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0007623 "circadian rhythm" evidence=RCA

TAIR|locus:2097945 AT3G47980 "AT3G47980" [Arabidopsis thaliana (taxid:3702)]

 Score = 653 (234.9 bits), Expect = 4.7e-64, P = 4.7e-64
 Identities = 135/227 (59%), Positives = 162/227 (71%)

Query:    23 LHSCSSFIISKLPDHPLSGNKRSLLLGTS---LSFNSNKETTSVIR---RRKRKNFEHGI 76
             LHS  + II   P     G KR   LG S   L  + +      +R    R+R +   G+
Sbjct:    16 LHS-RNLIIP--PSMVTVGFKRHHFLGVSSYGLCIDESVRHMRSLRSSSNRRRVSKSAGV 72

Query:    77 ---VASSSNVATPIWESWKPQKGSSNPSLSDILWPSAGAFAAMAILGKMDQILAPKGFSI 133
                VASS +     WESWKP+K +  PSLSD++WP+AGAFAAMAI+G++DQ+L PKG S+
Sbjct:    73 SMPVASSDDFPAVSWESWKPEKTTVAPSLSDVIWPAAGAFAAMAIMGRIDQMLNPKGISM 132

Query:   134 TIAPLGAVCAVLFATPSTPAARKYNVFMSQIGCAAIGVLAFSIFGPGWLARSAGLAASIA 193
             ++APLGAV A+LF TPS PAARKYN+F +QIGCAAIGVLAFS FGP WLARS  LAASIA
Sbjct:   133 SVAPLGAVSAILFTTPSAPAARKYNMFTAQIGCAAIGVLAFSAFGPSWLARSTALAASIA 192

Query:   194 FMIYARAPHPPAASLPILFIDGVKLHSLNFWYALFPGAAGCIILCLI 240
             FM+  RA HPPAASLP+LFIDG KLH LNFWYALFPGAA CI+LC +
Sbjct:   193 FMVITRANHPPAASLPLLFIDGAKLHKLNFWYALFPGAAACILLCFL 239

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016021 "integral to membrane" evidence=ISS

UNIPROTKB|Q481P2 CPS_2511 "HPP family protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 41/132 (31%), Positives = 67/132 (50%)

Query:   111 GAFAAMAILGKMDQILAPKGFSITIAPLGAVCAVLFATPSTPAARKYNVFMSQIGCAAIG 170
             GAF A+ +L  M+ IL     ++ +AP GA   ++F  P +P A+  NV +     A IG
Sbjct:    13 GAFLAIGLLSYMEAILGD--VALLMAPFGATAVLVFGVPDSPLAQPKNVILGHFITAFIG 70

Query:   171 VLAFSIFG--PGWLARSAGLAASIAFMIYARAPHPPAASLPILFIDGVKLHSLNFWYALF 228
             V+     G  P  LA + GL   +  M+ ++  HPPA + PIL    + L +  + + + 
Sbjct:    71 VVFVQYVGVTPLTLALATGLG--VTAMLASKTTHPPAGANPIL----IMLSAQGWGFLIT 124

Query:   229 PGAAGCIILCLI 240
             P   G +I+ L+
Sbjct:   125 PVLIGAVIIVLV 136

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CPS_2511 CPS_2511 "HPP family protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 41/132 (31%), Positives = 67/132 (50%)

Query:   111 GAFAAMAILGKMDQILAPKGFSITIAPLGAVCAVLFATPSTPAARKYNVFMSQIGCAAIG 170
             GAF A+ +L  M+ IL     ++ +AP GA   ++F  P +P A+  NV +     A IG
Sbjct:    13 GAFLAIGLLSYMEAILGD--VALLMAPFGATAVLVFGVPDSPLAQPKNVILGHFITAFIG 70

Query:   171 VLAFSIFG--PGWLARSAGLAASIAFMIYARAPHPPAASLPILFIDGVKLHSLNFWYALF 228
             V+     G  P  LA + GL   +  M+ ++  HPPA + PIL    + L +  + + + 
Sbjct:    71 VVFVQYVGVTPLTLALATGLG--VTAMLASKTTHPPAGANPIL----IMLSAQGWGFLIT 124

Query:   229 PGAAGCIILCLI 240
             P   G +I+ L+
Sbjct:   125 PVLIGAVIIVLV 136

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q81UC5 BAS0895 "Uncharacterized protein" [Bacillus anthracis (taxid:1392)]

 Score = 136 (52.9 bits), Expect = 4.9e-09, P = 4.9e-09
 Identities = 43/170 (25%), Positives = 77/170 (45%)

Query:    76 IVASSSNVATPIWESW-KPQKGSS-NP---SLSDILWPSAGAFAAMAILGKMDQILAPKG 130
             I A+    A PI   +    KG   +P   ++ D L    G F  +  L  +  I + + 
Sbjct:     4 ITAAKQKEAPPISVRYFAKMKGKGRSPLQVNIKDSLTGLLGGFLTILTLTYLTSITSTE- 62

Query:   131 FSITIAPLGAVCAVLFATPSTPAARKYNVFMSQIGCAAIGVLAFSIFGPGWLARSAGLAA 190
               + +AP GA C + F   + P ++  N+    +    IG+  + +FG  +   +  +  
Sbjct:    63 --LLMAPFGASCVLAFGVWNAPLSQPRNIIGGHLISTFIGLSIYHLFGNEYWTIALAVGM 120

Query:   191 SIAFMIYARAPHPPAASLPILFIDGVKLHSLNFWYALFPGAAGCIILCLI 240
             SIA M+  R  HPPA + PI+ I    L + ++ Y + P   G +++ +I
Sbjct:   121 SIAIMMLTRTTHPPAGADPIVVI----LEAYSWSYLVTPVLVGSLVIVVI 166

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|BA_0953 BA_0953 "conserved hypothetical protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 136 (52.9 bits), Expect = 4.9e-09, P = 4.9e-09
 Identities = 43/170 (25%), Positives = 77/170 (45%)

Query:    76 IVASSSNVATPIWESW-KPQKGSS-NP---SLSDILWPSAGAFAAMAILGKMDQILAPKG 130
             I A+    A PI   +    KG   +P   ++ D L    G F  +  L  +  I + + 
Sbjct:     4 ITAAKQKEAPPISVRYFAKMKGKGRSPLQVNIKDSLTGLLGGFLTILTLTYLTSITSTE- 62

Query:   131 FSITIAPLGAVCAVLFATPSTPAARKYNVFMSQIGCAAIGVLAFSIFGPGWLARSAGLAA 190
               + +AP GA C + F   + P ++  N+    +    IG+  + +FG  +   +  +  
Sbjct:    63 --LLMAPFGASCVLAFGVWNAPLSQPRNIIGGHLISTFIGLSIYHLFGNEYWTIALAVGM 120

Query:   191 SIAFMIYARAPHPPAASLPILFIDGVKLHSLNFWYALFPGAAGCIILCLI 240
             SIA M+  R  HPPA + PI+ I    L + ++ Y + P   G +++ +I
Sbjct:   121 SIAIMMLTRTTHPPAGADPIVVI----LEAYSWSYLVTPVLVGSLVIVVI 166

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8EH38 SO_1392 "Membrane protein, HPP family" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 135 (52.6 bits), Expect = 6.5e-09, P = 6.5e-09
 Identities = 37/140 (26%), Positives = 67/140 (47%)

Query:    99 NP-SLSDILWPSAGAFAAMAILGKMDQILAPKGFSITIAPLGAVCAVLFATPSTPAARKY 157
             NP +L   L    GA   ++ L  ++Q L P+   + +AP GA   +LFA P +P A+  
Sbjct:     5 NPQNLKMALLAGCGAMLCISSLAALEQ-LTPQTIWL-MAPFGATMVLLFALPESPLAQPR 62

Query:   158 NVFMSQIGCAAIGVLAFSIFGPGWLARSAGLAASIAFMIYARAPHPPAASLPILFIDGVK 217
             N+    +  + +G++  +  G   L     +   IA M+     HPPA + P++    V 
Sbjct:    63 NILCGHLLTSLVGLIILNTLGVSPLTLGLAVGLGIAVMMLTHTVHPPAGANPLV----VM 118

Query:   218 LHSLNFWYALFPGAAGCIIL 237
             L + ++ +   P A+G  ++
Sbjct:   119 LTAQHWDFLYMPVASGVALI 138

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SO_1392 SO_1392 "conserved hypothetical protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 135 (52.6 bits), Expect = 6.5e-09, P = 6.5e-09
 Identities = 37/140 (26%), Positives = 67/140 (47%)

Query:    99 NP-SLSDILWPSAGAFAAMAILGKMDQILAPKGFSITIAPLGAVCAVLFATPSTPAARKY 157
             NP +L   L    GA   ++ L  ++Q L P+   + +AP GA   +LFA P +P A+  
Sbjct:     5 NPQNLKMALLAGCGAMLCISSLAALEQ-LTPQTIWL-MAPFGATMVLLFALPESPLAQPR 62

Query:   158 NVFMSQIGCAAIGVLAFSIFGPGWLARSAGLAASIAFMIYARAPHPPAASLPILFIDGVK 217
             N+    +  + +G++  +  G   L     +   IA M+     HPPA + P++    V 
Sbjct:    63 NILCGHLLTSLVGLIILNTLGVSPLTLGLAVGLGIAVMMLTHTVHPPAGANPLV----VM 118

Query:   218 LHSLNFWYALFPGAAGCIIL 237
             L + ++ +   P A+G  ++
Sbjct:   119 LTAQHWDFLYMPVASGVALI 138

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

DICTYBASE|DDB_G0273707 DDB_G0273707 "HPP family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 130 (50.8 bits), Expect = 3.2e-06, P = 3.2e-06
 Identities = 39/191 (20%), Positives = 77/191 (40%)

Query:    55 NSNKETTSVIRRRKRKNFEHGIVASSSNVATPIWESWKP-QKGSSNPSLSDILWPSAGAF 113
             N+N          K KN +  I+ S        ++ WK  +K      L +I W    +F
Sbjct:   102 NNNNNNNKNENNNKIKNEKINILLSIKLYFIQYFKKWKGGEKSPVRADLEEIGWSWLSSF 161

Query:   114 AAMAILGKMD-QILAPKGFSITIAPLGAVCAVLFATPSTPAARKYNVFMSQIGCAAIG-- 170
               + +L  +  ++   K     +    A   ++F  P +P A+  N+ +  I  A +G  
Sbjct:   162 IGILVLALLHYRVTVEKETIFLLGSFAASAVLIFGAPKSPLAQPRNLVLGHIVSATVGSI 221

Query:   171 VLAFSIFGPGWLARSAGLAASIAF--MIYARAPHPPAASLPILFIDGVKLHSLNFWYALF 228
             +    ++       +  LA S+A   M + ++ HPP  +  ++ +   +     F+Y   
Sbjct:   222 IRVALVYTNAQTEVACALAVSLAIVGMHFTKSIHPPGGATALICVMSAEQRWRGFYYIFV 281

Query:   229 PGAAGCIILCL 239
             P A+G + + L
Sbjct:   282 PVASGSLTMLL 292

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

DICTYBASE|DDB_G0273361 DDB_G0273361 "HPP family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 130 (50.8 bits), Expect = 3.2e-06, P = 3.2e-06
 Identities = 39/191 (20%), Positives = 77/191 (40%)

Query:    55 NSNKETTSVIRRRKRKNFEHGIVASSSNVATPIWESWKP-QKGSSNPSLSDILWPSAGAF 113
             N+N          K KN +  I+ S        ++ WK  +K      L +I W    +F
Sbjct:   102 NNNNNNNKNENNNKIKNEKINILLSIKLYFIQYFKKWKGGEKSPVRADLEEIGWSWLSSF 161

Query:   114 AAMAILGKMD-QILAPKGFSITIAPLGAVCAVLFATPSTPAARKYNVFMSQIGCAAIG-- 170
               + +L  +  ++   K     +    A   ++F  P +P A+  N+ +  I  A +G  
Sbjct:   162 IGILVLALLHYRVTVEKETIFLLGSFAASAVLIFGAPKSPLAQPRNLVLGHIVSATVGSI 221

Query:   171 VLAFSIFGPGWLARSAGLAASIAF--MIYARAPHPPAASLPILFIDGVKLHSLNFWYALF 228
             +    ++       +  LA S+A   M + ++ HPP  +  ++ +   +     F+Y   
Sbjct:   222 IRVALVYTNAQTEVACALAVSLAIVGMHFTKSIHPPGGATALICVMSAEQRWRGFYYIFV 281

Query:   229 PGAAGCIILCL 239
             P A+G + + L
Sbjct:   282 PVASGSLTMLL 292

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	242
pfam04982	120	pfam04982, HPP, HPP family	1e-19
COG3448	382	COG3448, COG3448, CBS-domain-containing membrane p	3e-11

>gnl|CDD|218360 pfam04982, HPP, HPP family

 Score = 81.0 bits (201), Expect = 1e-19
 Identities = 36/107 (33%), Positives = 54/107 (50%), Gaps = 4/107 (3%)

Query: 135 IAPLGAVCAVLFATPSTPAARKYNVFMSQIGCAAIGVLAFSIFGPGWLARSAGLAASIAF 194
           IAP GA   +LFA P++P A+  NV    +  A IGV    +FG    A +  +  +IA 
Sbjct: 3   IAPFGASAVLLFAVPASPLAQPRNVIGGHLLSALIGVAVAKLFGDPLWAAALAVGLAIAL 62

Query: 195 MIYARAPHPPAASLPIL-FIDGVKLHSLNFWYALFPGAAGCIILCLI 240
           M   R  HPPA +  +L  + G    +L + + L P   G ++L L+
Sbjct: 63  MQLTRTLHPPAGATALLAVLGG---PALGYGFLLVPVLLGSLLLVLV 106

These proteins are integral membrane proteins with four transmembrane spanning helices. The most conserved region of the alignment is a motif HPP. The function of these proteins is uncertain but they may be transporters. Length = 120

>gnl|CDD|225979 COG3448, COG3448, CBS-domain-containing membrane protein [Signal transduction mechanisms]

 Score = 62.1 bits (151), Expect = 3e-11
 Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 5/140 (3%)

Query: 100 PSLSDILWPSAGAFAAMAILGKMDQILAPKGFSITIAPLGAVCAVLFATPSTPAARKYNV 159
             L   +    G        G +  +       + +AP+GA   +LFA P++P A+ +++
Sbjct: 27  ERLRAAIGALIGILLTGLACGYV--LGVDPNLPLLVAPMGASAVLLFAVPASPLAQPWSI 84

Query: 160 FMSQIGCAAIGVLAFSIFGPGWLARSAGLAASIAFMIYARAPHPP--AASLPILFIDGVK 217
               +  A +GV      G   LA    ++ +I  M   R  HPP  A +L  + + G  
Sbjct: 85  IGGNLVAALVGVTVAYFVGDPVLASGLAVSLAIGAMFALRCLHPPSGAVALTAV-LGGPA 143

Query: 218 LHSLNFWYALFPGAAGCIIL 237
           +H L + + L+P A   +IL
Sbjct: 144 VHRLGYNFVLWPVALNSLIL 163

Length = 382

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	242
COG3448	382	CBS-domain-containing membrane protein [Signal tra	100.0
PF04982	120	HPP: HPP family; InterPro: IPR007065 These protein	100.0
PF06081	141	DUF939: Bacterial protein of unknown function (DUF	93.44
COG4129	332	Predicted membrane protein [Function unknown]	92.79
PF04632	650	FUSC: Fusaric acid resistance protein family; Inte	81.61

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.9e-39  Score=299.11  Aligned_cols=153  Identities=24%  Similarity=0.447  Sum_probs=140.7

Q ss_pred             hhhhhCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhc--CCCceEEecchhhhhhHhhcCCCCCCccchhhhhhhH
Q 026186           87 IWESWKPQKGSSNPSLSDILWPSAGAFAAMAILGKMDQILA--PKGFSITIAPLGAVCAVLFATPSTPAARKYNVFMSQI  164 (242)
Q Consensus        87 ~l~~~~p~~~~~~~~l~d~l~a~lGaflgI~ll~~l~~~~~--~~~~plLiasfGASAVLlF~~P~SPlAQPrnVIgGHl  164 (242)
                      |++.+.|...+.+  ++|.+++.+|+++||++.++++.+..  +...|++++||||||||+|++|+||+|||||+||||+
T Consensus        12 wfk~f~P~~~~v~--~rerl~~~~gA~iGilltg~~c~~~~~~~~~lpllvAPmGASAVLLFavpaSPLAQPwsiiGGNl   89 (382)
T COG3448          12 WFKLFHPLTAPVR--LRERLRAAIGALIGILLTGLACGYVLGVDPNLPLLVAPMGASAVLLFAVPASPLAQPWSIIGGNL   89 (382)
T ss_pred             HHHhcCcccCCCC--cHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcchhccccCcceEEEEeccCCccccchhhhcchH
Confidence            4455577665544  59999999999999999999998854  3467999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHhCCCCCCCCcceee-eeccccccccCchhhhHHHHHHHHHhhhhc
Q 026186          165 GCAAIGVLAFSIFGPGWLARSAGLAASIAFMIYARAPHPPAASLPIL-FIDGVKLHSLNFWYALFPGAAGCIILCLIV  241 (242)
Q Consensus       165 iSAlIGv~~~~l~g~~wlAaaLAValAI~~M~ltrtvHPPAGAtALi-vl~~~~~~~lg~~fvl~PVllgsliLlli~  241 (242)
                      ++|++|+.+.+++|++.+++++||+++|..|+.|||+|||+||.||. +++|+.++++||+|+++||++++++|+.++
T Consensus        90 vaAlvgvtva~~vgd~~la~~lavsLaI~~M~~~rcLHPPsgAvALtavlgGpav~~~g~~F~l~Pval~SliLv~~a  167 (382)
T COG3448          90 VAALVGVTVAYFVGDPVLASGLAVSLAIGAMFALRCLHPPSGAVALTAVLGGPAVHRLGYNFVLWPVALNSLILVGLA  167 (382)
T ss_pred             HHHHHhhhhhhhhCChHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhcCcccccCCCCceehhhhhhhHHHHHHH
Confidence            99999999999999999999999999999999999999999999999 788899999999999999999999998764

>PF04982 HPP: HPP family; InterPro: IPR007065 These proteins are integral membrane proteins with four transmembrane spanning helices

Probab=100.00  E-value=2.8e-33  Score=226.47  Aligned_cols=107  Identities=32%  Similarity=0.586  Sum_probs=99.4

Q ss_pred             EEecchhhhhhHhhcCCCCCCccchhhhhhhHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHhCCCCCCCCcceeee
Q 026186          133 ITIAPLGAVCAVLFATPSTPAARKYNVFMSQIGCAAIGVLAFSIFGPGWLARSAGLAASIAFMIYARAPHPPAASLPILF  212 (242)
Q Consensus       133 lLiasfGASAVLlF~~P~SPlAQPrnVIgGHliSAlIGv~~~~l~g~~wlAaaLAValAI~~M~ltrtvHPPAGAtALiv  212 (242)
                      ++++||||||+|+|+.|++|+|||||+++||++++++|+++.+++|+.||++++|+++++++|.++||+||||||||+++
T Consensus         1 ll~~s~gAsa~llf~~p~sp~aqP~~vi~gh~isa~iG~~~~~~~~~~~~~~alav~lai~~M~~~~~~HPPA~Atall~   80 (120)
T PF04982_consen    1 LLLPSFGASAVLLFGAPSSPLAQPRNVIGGHLISALIGVLCVYLFGDPWWAAALAVGLAIVLMVLTRTVHPPAGATALLA   80 (120)
T ss_pred             CccccHHHHHHHhhcCCCCchhchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHcCCCCchhhhhhhh
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999995


Q ss_pred             eccccccccCchhhhHHHHHHHHHhhhhc
Q 026186          213 IDGVKLHSLNFWYALFPGAAGCIILCLIV  241 (242)
Q Consensus       213 l~~~~~~~lg~~fvl~PVllgsliLlli~  241 (242)
                      +.++..  ++|+|++.||++|+++|+.++
T Consensus        81 ~l~~~~--~~~~~~~~pVl~g~~il~~~a  107 (120)
T PF04982_consen   81 VLGGAS--LGWGFVLIPVLLGSLILVVVA  107 (120)
T ss_pred             hhcccc--cCchHHHHHHHHHHHHHHHHH
Confidence            444432  689999999999999988764

The most conserved region of an alignment of the proteins is a motif HPP. The function of these proteins is uncertain but they may be transporters.

>PF06081 DUF939: Bacterial protein of unknown function (DUF939); InterPro: IPR010343 This entry consists of several hypothetical bacterial proteins of unknown function

Probab=93.44  E-value=0.18  Score=41.78  Aligned_cols=93  Identities=17%  Similarity=0.190  Sum_probs=68.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhcCCCceEEecchhhhhhHhhcCCCCCCccchhhhhhhHHHHHHHHHHHHhhChhHH
Q 026186          103 SDILWPSAGAFAAMAILGKMDQILAPKGFSITIAPLGAVCAVLFATPSTPAARKYNVFMSQIGCAAIGVLAFSIFGPGWL  182 (242)
Q Consensus       103 ~d~l~a~lGaflgI~ll~~l~~~~~~~~~plLiasfGASAVLlF~~P~SPlAQPrnVIgGHliSAlIGv~~~~l~g~~wl  182 (242)
                      .+.+.+.+++++++.+..++..     +. -..++++|--.+-= +-+.-+-+=++-+.|+++++++|+.+..++|++||
T Consensus         5 ~r~iKtaiA~~la~~ia~~l~~-----~~-~~~A~i~Ail~~q~-T~~~S~~~~~~Ri~~~~iG~~~a~~~~~~~g~~~~   77 (141)
T PF06081_consen    5 MRTIKTAIAAFLAILIAQLLGL-----QY-PFFAPIAAILSMQP-TVYRSLKQGLNRILGTLIGALLALLFFLILGYNPL   77 (141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCC-----Cc-hHHHHHHHhheeeh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHH
Confidence            3567788998888888766531     21 23444443322221 12233566788999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhCCCC
Q 026186          183 ARSAGLAASIAFMIYARAPH  202 (242)
Q Consensus       183 AaaLAValAI~~M~ltrtvH  202 (242)
                      +.++.+.+.+.....+|.-+
T Consensus        78 ~~~l~v~i~i~~~~~l~~~~   97 (141)
T PF06081_consen   78 SIGLAVIITIPICNWLKLGE   97 (141)
T ss_pred             HHHHHHHHHHHHHHHhCCCC
Confidence            99999999999999999864

>COG4129 Predicted membrane protein [Function unknown]

Probab=92.79  E-value=0.58  Score=44.53  Aligned_cols=100  Identities=18%  Similarity=0.167  Sum_probs=71.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhcCCCceEEecchhhhhhHhhcCCCCC--CccchhhhhhhHHHHHHHHHHHHhhChh
Q 026186          103 SDILWPSAGAFAAMAILGKMDQILAPKGFSITIAPLGAVCAVLFATPSTP--AARKYNVFMSQIGCAAIGVLAFSIFGPG  180 (242)
Q Consensus       103 ~d~l~a~lGaflgI~ll~~l~~~~~~~~~plLiasfGASAVLlF~~P~SP--lAQPrnVIgGHliSAlIGv~~~~l~g~~  180 (242)
                      .+.+.+.+|+++++.+..++..     +.    +.|++-..++-.-|+-+  +=+=++.+.|+.+++++|+++..++|..
T Consensus        11 ~RtlKt~ia~~La~~ia~~l~~-----~~----~~~A~i~AV~~l~~t~~~s~~~~~~r~~g~~iG~~~a~l~~~l~g~~   81 (332)
T COG4129          11 ARTLKTGLAAGLALLIAHLLGL-----PQ----PAFAGISAVLCLSPTIKRSLKRALQRLLGNALGAILAVLFFLLFGQN   81 (332)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCC-----Cc----hHHHHHHHhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence            5667788888888887764432     22    23333333333333322  3356788999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCCCCCcceee
Q 026186          181 WLARSAGLAASIAFMIYARAPHPPAASLPIL  211 (242)
Q Consensus       181 wlAaaLAValAI~~M~ltrtvHPPAGAtALi  211 (242)
                      .++.++.+.+.+.++..++-.++=..++.++
T Consensus        82 ~~~~~v~~~i~i~~~~~~~~~~g~~~~~~~~  112 (332)
T COG4129          82 PIAFGVVLLIIIPLLVLLKLENGVVPITVGV  112 (332)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccchhHHHHHH
Confidence            9999999999999999999888654444443

>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate

Probab=81.61  E-value=9.6  Score=37.71  Aligned_cols=110  Identities=20%  Similarity=0.150  Sum_probs=70.5

Q ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCCceEEecchhhhhhHhhcCCCCCCccchhhhhhhHHHHHHHHHHHHh
Q 026186           97 SSNPSLSDILWPSAGAFAAMAILGKMDQILAPKGFSITIAPLGAVCAVLFATPSTPAARKYNVFMSQIGCAAIGVLAFSI  176 (242)
Q Consensus        97 ~~~~~l~d~l~a~lGaflgI~ll~~l~~~~~~~~~plLiasfGASAVLlF~~P~SPlAQPrnVIgGHliSAlIGv~~~~l  176 (242)
                      +...++.+.++..+-+++++.+.+++=.+. +........-+.+-...+|..-+.|.-..+.++.|-++++++|..+..+
T Consensus       331 ~~~~d~~~A~~~alra~la~~~~~l~Wi~t-~W~~G~~~~~~~~v~~~lfa~~~~P~~~~~~~~~G~l~~~~~a~~~~~~  409 (650)
T PF04632_consen  331 PLHRDWPLALRNALRAFLAILIAGLFWIAT-GWPSGATAVMMAAVVSSLFATLDNPAPALRLFLIGALLGAVLAFLYLFF  409 (650)
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHHHHc-CCChhHHHHHHHHHHHHHHcCCcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445667888999999999998877654322 2222233333445555569999999999999999999999999887654


Q ss_pred             h-C--hhH--HHHHHHHHHHHHHHHHhCCCCCCCCccee
Q 026186          177 F-G--PGW--LARSAGLAASIAFMIYARAPHPPAASLPI  210 (242)
Q Consensus       177 ~-g--~~w--lAaaLAValAI~~M~ltrtvHPPAGAtAL  210 (242)
                      + +  ++.  +...+++.+.+..+.   ..||.-...++
T Consensus       410 vlP~~~~f~~L~l~l~~~l~~~~~~---~~~p~~~~~g~  445 (650)
T PF04632_consen  410 VLPHLDGFPLLALVLAPFLFLGGLL---MARPRTAYIGL  445 (650)
T ss_pred             hhhccCcHHHHHHHHHHHHHHHHHH---HcCchHHHHHH
Confidence            4 3  223  333443333333222   34677665444

It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00