Citrus Sinensis ID: 026188

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240--
Protein Sequence
MMHRCSSSHGNMVGSSCSCSSGLYPSQSNSFSMLFSMPNHKSYDETDMYAFMSPSSVDCTLSLGTPSTRLSDDDEKRIRHDQRRSASNCMTDFCWDFLHTKNSPYNTAHKIIRPVAVAIIVVTPLVAAPAMIPSSPAVVLTVTPLLHRFGETVLEAQSHYAMLVEFGSRRKREEPQQQMQTAQTSRQQRSSHMAITTIHGFKFNKRSRKKCLVFLLQMSLGSLKTVIKLLIRAFPSFLGDSM
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccHHHHHHHHHHHHHccccccHHHHHHccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccEccccccccccccccccccEEEEEEccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccEccccccccccEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccccEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHccccc
Coil and Loop (DISEMBL)
mmhrcssshgnmvgsscscssglypsqsnsfsmlfsmpnhksydetdmyafmspssvdctlslgtpstrlsdddekrirhdqrrsasncmtdfcwdflhtknspyntahkiIRPVAVAIIVVTplvaapamipsspavvlTVTPLLHRFGETVLEAQSHYAMLVEFgsrrkreepqqQMQTAQTSRQQRSSHMAITTihgfkfnkrSRKKCLVFLLQMSLGSLKTVIKLLIRAFpsflgdsm
Flexible Loop (DISEMBL)
mmhrcssshgnmvGSSCSCSSGLYPSQSNSFSMLFSMPNHKSYDETDMYAFMSPSSVDCTLSLGtpstrlsdddekrirhdqrrsasncmTDFCWDFLHTKNSPYNTAHKIIRPVAVAIIVVTPLVAAPAMIPSSPAVVLTVTPLLHRFGETVLEAQSHYAMLVEFGSRRKREEPQQQMQTaqtsrqqrsshMAITTihgfkfnkrSRKKCLVFLLQMSLGSLKTVIKLLIRAFPSFLGDSM
Low Complexity Region (SEG)
MMHRCSSSHGNMVgsscscssgLYPSQSNSFSMLFSMPNHKSYDETDMYAFMSPSSVDCTLSLGTPSTRLSDDDEKRIRHDQRRSASNCMTDFCWDFLHTKNSPYNTAHKiirpvavaiivvtplvaapaMIPSSPAVVLTVTPLLHRFGETVLEAQSHYAMLVEFGSRRKREEPqqqmqtaqtsrqqrssHMAITTIHGFKFNKRSRKKCLVFLLQMSLGSLKTVIKLLIRAFPSFLGDSM
Disordered region (IsUnstruct)
***************************************************************************************NCMTDFCWDFLHTKNSPYNTAHKIIRPVAVAIIVVTPLVAAPAMIPSSPAVVLTVTPLLHRFGETVLEAQSHYAMLVEF***************************AITTIHGFKFNKRSRKKCLVFLLQMSLGSLKTVIKLLIRAFPSFL****
Disordered Region (DISOPRED)
***************SCSCSSGLYPSQSNSFSMLFSM*******************VDCTLSLGT*************************TDFCW**************************************SSPAVVLTVTPLLHRFGETVLEAQSHYAMLVEFGS******************************************CLVFLLQMSLGSLKTVIKLLIRAFPSFLGD**
Disordered Region (DISEMBL)
*********************GLYPSQSNSFSMLFSMPNHKSYDETDMYAFMSPSSVDCTLSLGTPSTRLSDDDEKRIRHDQRRSASNCMTDFCWDFLHTKNSPYNTAHKIIRPVAVAIIVVTPLVAAPAMIPSSPAVVLTVTPLLHRFGETVLEAQSHYAMLVEFGSR**********************HMAITTIHGFKFNKRSRKKCLVFLLQMSLGSLKTVIKLLIRAFPSFLGDSM
Disordered Region (DISPRO)
************VGSSCSCSSGLYPSQSNSFSMLFSMPNHKSYDET****FMSPSSVDCTLSLGTP**********************CMTDFCWDFLHTKNSPYNTAHKIIRPVAVAIIVVTPLVAAPAMIPSSPAVVLTVTPLLHRFGETVLEAQSHYAMLVEFGSR*********************SHMAITTIHGFKFNKRSRKKCLVFLLQMSLGSLKTVIKLLIRAFPSFL****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMHRCSSSHGNMVGSSCSCSSGLYPSQSNSFSMLFSMPNHKSYDETDMYAFMSPSSVDCTLSLGTPSTRLSDDDEKRIRHDQRRSASNCMTDFCWDFLHTKNSPYNTAHKIIRPVAVAIIVVTPLVAAPAMIPSSPAVVLTVTPLLHRFGETVLEAQSHYAMLVEFGSRRKREEPQQQMQTAQTSRQQRSSHMAITTIHGFKFNKRSRKKCLVFLLQMSLGSLKTVIKLLIRAFPSFLGDSM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	242	2.2.26 [Sep-21-2011]
Q8LC79	295	GATA transcription factor	yes	no	0.619	0.508	0.335	9e-13
Q9ZPX0	208	GATA transcription factor	no	no	0.380	0.442	0.420	3e-06
Q6QPM2	211	GATA transcription factor	no	no	0.231	0.265	0.471	1e-05

>sp|Q8LC79|GAT18_ARATH GATA transcription factor 18 OS=Arabidopsis thaliana GN=GATA18 PE=2 SV=2

 Score = 73.9 bits (180), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 82/167 (49%), Gaps = 17/167 (10%)

Query: 28  SNSFSMLFSMPNHKSYDETDMYAFMSPSSVDCTLSLGTPSTRLSDDDEKRIRHDQRRSAS 87
           + S+SM+FSM N   +++       S S VDCTLSLGTPSTRL ++DEKR R      AS
Sbjct: 38  AGSYSMVFSMQNGGVFEQNGEDYHHSSSLVDCTLSLGTPSTRLCEEDEKR-RRSTSSGAS 96

Query: 88  NCMTDFCWDFLHTKN-----SPYN-----TAHKIIRPVAVAIIVVTPLVAAPAMIPSSPA 137
           +C+++F WD +HTKN     +PYN     +A+K  R  +             +++    A
Sbjct: 97  SCISNF-WDLIHTKNNNSKTAPYNNVPSFSANKPSRGCSGGGGGGGGGGGGDSLLARRCA 155

Query: 138 VVLTVTPLLHRFGETVLEAQSHYAMLVEFGSRRKREEPQQQMQTAQT 184
              T +  L R G      +   ++    G R K+EE +    T  T
Sbjct: 156 NCDTTSTPLWRNG-----PRGPKSLCNACGIRFKKEERRTTAATGNT 197

Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZPX0|GAT20_ARATH GATA transcription factor 20 OS=Arabidopsis thaliana GN=GATA20 PE=2 SV=2

 Score = 52.4 bits (124), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/107 (42%), Positives = 54/107 (50%), Gaps = 15/107 (14%)

Query: 27  QSNS-FSMLFSMPN----HKSYDETDMYAFMSPSSVDCTLSLGTPSTRLSDDDEKRIRHD 81
           Q+NS FSM FS  N    H +YD  +   F S +SVDCTLSLGTPSTRL  DD  R    
Sbjct: 5   QTNSNFSMFFSSENDDQNHHNYDPYNN--FSSSTSVDCTLSLGTPSTRL--DDHHRF--- 57

Query: 82  QRRSASNCMTDFCWDFLHTKNSPY---NTAHKIIRPVAVAIIVVTPL 125
              +++N   DF     + K S Y     AH + R  A      TPL
Sbjct: 58  SSANSNNISGDFYIHGGNAKTSSYKKGGVAHSLPRRCASCDTTSTPL 104

Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6QPM2|GAT19_ARATH GATA transcription factor 19 OS=Arabidopsis thaliana GN=GATA19 PE=2 SV=2

 Score = 50.1 bits (118), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 41/70 (58%), Gaps = 14/70 (20%)

Query: 31 FSMLFSMPNHKSYDETDMYAFMSP-SSVDCTLSLGTPSTRLSDDDEKRIRHDQRRSASNC 89
          FSM FS        E D+    SP +SVDCTLSLGTPSTRL ++D      D+RR +S+ 
Sbjct: 3  FSMFFSP-------ENDVSHHSSPYASVDCTLSLGTPSTRLCNED------DERRFSSHT 49

Query: 90 MTDFCWDFLH 99
               WDFL+
Sbjct: 50 SDTIGWDFLN 59

Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	242
224094793	253	predicted protein [Populus trichocarpa]	0.446	0.426	0.743	7e-35
147792212	324	hypothetical protein VITISV_009032 [Viti	0.429	0.320	0.648	8e-31
297735150	285	unnamed protein product [Vitis vinifera]	0.384	0.326	0.69	4e-29
359476567	294	PREDICTED: LOW QUALITY PROTEIN: GATA tra	0.409	0.336	0.622	6e-27
255561158	332	GATA transcription factor, putative [Ric	0.384	0.280	0.6	9e-23
357483435	235	GATA transcription factor [Medicago trun	0.376	0.387	0.552	1e-16
356561235	251	PREDICTED: GATA transcription factor 18-	0.384	0.370	0.504	6e-16
356540761	257	PREDICTED: LOW QUALITY PROTEIN: GATA tra	0.376	0.354	0.504	8e-15
356502179	239	PREDICTED: GATA transcription factor 18-	0.326	0.330	0.548	8e-14
449451531	214	PREDICTED: GATA transcription factor 18-	0.367	0.415	0.485	2e-12

>gi|224094793|ref|XP_002310237.1| predicted protein [Populus trichocarpa] gi|222853140|gb|EEE90687.1| predicted protein [Populus trichocarpa]

 Score =  153 bits (386), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 87/117 (74%), Positives = 95/117 (81%), Gaps = 9/117 (7%)

Query: 2   MHRCSSSHGNMVGSSCSCSSGLYPSQSNSFSMLFSMPNH-KSYDETDMYAFMSPSS-VDC 59
           MHRCSSSH NMVG  CSCS  +Y +QSNSFSMLFSMPNH KS+DETDMY   SPSS VDC
Sbjct: 1   MHRCSSSHCNMVGP-CSCS--MYHTQSNSFSMLFSMPNHHKSFDETDMYPVTSPSSSVDC 57

Query: 60  TLSLGTPSTRLSDDDEKRIRHDQRRSASNCMTDFCWDFLHTKN--SPY-NTAHKIIR 113
           TLSLGTPSTRLS+DDEKR+RHDQRRS S CM++FCWD L TKN  +PY   AHK  R
Sbjct: 58  TLSLGTPSTRLSEDDEKRMRHDQRRSGS-CMSNFCWDILQTKNNSTPYPPQAHKTSR 113

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147792212|emb|CAN72981.1| hypothetical protein VITISV_009032 [Vitis vinifera]

 Score =  139 bits (351), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 72/111 (64%), Positives = 86/111 (77%), Gaps = 7/111 (6%)

Query: 2   MHRCSSSHGNMVGSSCSCSSGLYPSQSNSFSMLFSMPNHKSYDETDMYAF--MSPSSVDC 59
           MHRCSSS GNM G    C+ GL+ +QSNSFSMLFSMPNHK +DETDMY F   S SSVDC
Sbjct: 76  MHRCSSSQGNMAGP---CTCGLFHNQSNSFSMLFSMPNHKPFDETDMYPFTSSSSSSVDC 132

Query: 60  TLSLGTPSTRLSDDDEKRIRHDQRRSASNCMTDFCWDFLHTKNSPYNTAHK 110
           TLSLGTPSTRL+D+DEKR+ HD+R  A +C+++FCWD L  K++P    HK
Sbjct: 133 TLSLGTPSTRLTDNDEKRMHHDRR--AGSCVSNFCWDILQXKHTPSAPTHK 181

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735150|emb|CBI17512.3| unnamed protein product [Vitis vinifera]

 Score =  134 bits (336), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 69/100 (69%), Positives = 81/100 (81%), Gaps = 7/100 (7%)

Query: 2  MHRCSSSHGNMVGSSCSCSSGLYPSQSNSFSMLFSMPNHKSYDETDMYAF--MSPSSVDC 59
          MHRCSSS GNM G    C+ GL+ +QSNSFSMLFSMPNHK +DETDMY F   S SSVDC
Sbjct: 1  MHRCSSSQGNMAGP---CTCGLFHNQSNSFSMLFSMPNHKPFDETDMYPFTSSSSSSVDC 57

Query: 60 TLSLGTPSTRLSDDDEKRIRHDQRRSASNCMTDFCWDFLH 99
          TLSLGTPSTRL+D+DEKR+ HD+R  A +C+++FCWD LH
Sbjct: 58 TLSLGTPSTRLTDNDEKRMHHDRR--AGSCVSNFCWDILH 95

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476567|ref|XP_002266664.2| PREDICTED: LOW QUALITY PROTEIN: GATA transcription factor 18-like [Vitis vinifera]

 Score =  126 bits (317), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 66/106 (62%), Positives = 82/106 (77%), Gaps = 7/106 (6%)

Query: 7   SSHGNMVGSSCSCSSGLYPSQSNSFSMLFSMPNHKSYDETDMYAF--MSPSSVDCTLSLG 64
           +S GNM G    C+ GL+ +QSNSFSMLFSMPNHK +DETDMY F   S SSVDCTLSLG
Sbjct: 51  TSQGNMAGP---CTCGLFHNQSNSFSMLFSMPNHKPFDETDMYPFTSSSSSSVDCTLSLG 107

Query: 65  TPSTRLSDDDEKRIRHDQRRSASNCMTDFCWDFLHTKNSPYNTAHK 110
           TPSTRL+D+DEKR+ HD+R  A +C+++FCWD L +K++P    HK
Sbjct: 108 TPSTRLTDNDEKRMHHDRR--AGSCVSNFCWDILQSKHTPSAPTHK 151

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561158|ref|XP_002521591.1| GATA transcription factor, putative [Ricinus communis] gi|223539269|gb|EEF40862.1| GATA transcription factor, putative [Ricinus communis]

 Score =  113 bits (282), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 66/110 (60%), Positives = 79/110 (71%), Gaps = 17/110 (15%)

Query: 5   CSSSHGNMVGSSCSCSSGLYPSQSNSFSMLFSMPN---HKSYDETDMYAF-----MSPSS 56
           CSS   N VG    C+ GL+ +Q+NSF+MLFSMPN   H SYDETDMY F      S SS
Sbjct: 85  CSS---NTVGQ---CTCGLFHTQTNSFTMLFSMPNNHPHNSYDETDMYPFPSSSSSSSSS 138

Query: 57  VDCTLSLGTPSTRLSDDDEKR-IRHDQRRSASNCMTDFCWDFLHTKNSPY 105
           VDCTLSLGTPSTRL +DD+KR I HD+R   ++CM++FCWD L  KN+PY
Sbjct: 139 VDCTLSLGTPSTRLCEDDDKRSICHDRR--PTSCMSNFCWDILQNKNTPY 186

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357483435|ref|XP_003612004.1| GATA transcription factor [Medicago truncatula] gi|355513339|gb|AES94962.1| GATA transcription factor [Medicago truncatula]

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/105 (55%), Positives = 67/105 (63%), Gaps = 14/105 (13%)

Query: 1   MMHRCSSSHGNMVGSSCSCSSGLYPSQSNSFSMLFSMPNHKSYD-ETDMYAFM---SPSS 56
           MMHR  SS G  V   CSC  G++  Q+NSFSMLFS  +   YD E + Y F    S SS
Sbjct: 1   MMHR--SSQGQHVMGHCSC--GMFHGQNNSFSMLFS--SSTPYDHEPETYCFTPNSSSSS 54

Query: 57  VDCTLSLGTPSTRLSDDDEKRIRHDQRRSASNCMTDFCWDFLHTK 101
           VDCTLSLGTPSTR ++D+EKR RH +RRS  N    FCWD L  K
Sbjct: 55  VDCTLSLGTPSTRFTEDEEKRTRHHERRSVKN----FCWDLLTPK 95

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356561235|ref|XP_003548888.1| PREDICTED: GATA transcription factor 18-like [Glycine max]

 Score = 90.1 bits (222), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 56/111 (50%), Positives = 77/111 (69%), Gaps = 18/111 (16%)

Query: 1   MMHRCSSSHGNMVGSSCSCSSGLYPSQSNSF-SMLFSMPNHKSYDETDMYAFM--SPSSV 57
           M H C SS G+++G+   C+ G+Y S+++++ SMLFS+PN+  YD   MY+    SPSSV
Sbjct: 2   MHHCCGSSQGHVMGT---CTCGMYHSETSAYGSMLFSVPNNSEYD---MYSSFTPSPSSV 55

Query: 58  DCTLSLGTPSTRLS-----DDDEKRIRHDQRRSASNCMTDFCWDFLHTKNS 103
           DCTLSLGTPSTRL+     D+D KR  H QRRS    + +FCWD LH+K++
Sbjct: 56  DCTLSLGTPSTRLTQDDDHDNDNKRHPH-QRRSG---VANFCWDLLHSKHN 102

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540761|ref|XP_003538853.1| PREDICTED: LOW QUALITY PROTEIN: GATA transcription factor 18-like, partial [Glycine max]

 Score = 86.7 bits (213), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 55/109 (50%), Positives = 75/109 (68%), Gaps = 18/109 (16%)

Query: 6   SSSHGNMVGSSCSCSSGLYPSQS-NSFSMLFSMPNHKS--YDETD-MYAFMSPSS----- 56
           + S G+++G    C+ G++ SQ+ +SF+M FSMPNHK   YD++D +Y + S +      
Sbjct: 18  TGSQGHVMGP---CTCGMFHSQTTSSFAMFFSMPNHKPPPYDDSDNIYDYSSFTPSSSSS 74

Query: 57  VDCTLSLGTPSTRLSDDDEKRIRHDQRRSASNCMTDFCWDFLHTK-NSP 104
           VDCTLSLGTPSTR S+D+EKR RH +RRS SN    FCWD L +K N+P
Sbjct: 75  VDCTLSLGTPSTRFSEDEEKRSRH-ERRSVSN----FCWDLLQSKHNNP 118

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356502179|ref|XP_003519898.1| PREDICTED: GATA transcription factor 18-like [Glycine max]

 Score = 83.2 bits (204), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 51/93 (54%), Positives = 66/93 (70%), Gaps = 14/93 (15%)

Query: 18  SCSSGLY----PSQSNSF-SMLFSMPNHKSY-DETDMYAFMSPS--SVDCTLSLGTPSTR 69
           +C+ G+Y     S+++S+ SMLFSMPN+  Y  E D+Y+  +PS  SVDCTLSLGTPSTR
Sbjct: 3   TCTCGMYHNHNSSEASSYGSMLFSMPNNNEYYQEHDIYSSFTPSHSSVDCTLSLGTPSTR 62

Query: 70  LS--DDDEKRIRHDQRRSASNCMTDFCWDFLHT 100
           L+  +DD KR RH QRRS    +T FCWD LH+
Sbjct: 63  LTQDEDDNKRHRH-QRRSG---VTSFCWDLLHS 91

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451531|ref|XP_004143515.1| PREDICTED: GATA transcription factor 18-like [Cucumis sativus] gi|449496498|ref|XP_004160149.1| PREDICTED: GATA transcription factor 18-like [Cucumis sativus]

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/101 (48%), Positives = 61/101 (60%), Gaps = 12/101 (11%)

Query: 1   MMHRCSSSHGNMVGSSCSCSSGLYPSQSNSFSMLFSMPNHKSYDETDMYAFMSPSSVDCT 60
           MM RC S      G  CSC+ G Y  Q       FSMP++ +Y ET+ Y+F S S VDCT
Sbjct: 1   MMQRCGSYQCYSAGE-CSCN-GFYGQQG----TYFSMPSYNNYYETEHYSFESSSPVDCT 54

Query: 61  LSLGTPSTRLSDDDEKRIRHDQRRSASNCMTDFCWDFLHTK 101
           LSLGTPSTR+++ DEK  R +++ SASN    F WD   TK
Sbjct: 55  LSLGTPSTRMTEYDEK--RREEQHSASN----FTWDLPRTK 89

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	242
TAIR|locus:2077932	295	MNP "MONOPOLE" [Arabidopsis th	0.334	0.274	0.493	2.6e-15
TAIR|locus:2062095	208	GATA20 "GATA transcription fac	0.322	0.375	0.415	1.8e-06
TAIR|locus:2115195	211	GATA19 "GATA transcription fac	0.235	0.270	0.478	2.7e-06

TAIR|locus:2077932 MNP "MONOPOLE" [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 41/83 (49%), Positives = 55/83 (66%)

Query:    26 SQSNSFSMLFSMPNHKSYDETDMYAFMSPSSVDCTLSLGTPSTRLSDDDEKRIRHDQRRS 85
             S + S+SM+FSM N   +++       S S VDCTLSLGTPSTRL ++DEKR R      
Sbjct:    36 SNAGSYSMVFSMQNGGVFEQNGEDYHHSSSLVDCTLSLGTPSTRLCEEDEKR-RRSTSSG 94

Query:    86 ASNCMTDFCWDFLHTKNSPYNTA 108
             AS+C+++F WD +HTKN+   TA
Sbjct:    95 ASSCISNF-WDLIHTKNNNSKTA 116

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IEP

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009909 "regulation of flower development" evidence=IGI

GO:0009790 "embryo development" evidence=IMP

GO:0048446 "petal morphogenesis" evidence=RCA

TAIR|locus:2062095 GATA20 "GATA transcription factor 20" [Arabidopsis thaliana (taxid:3702)]

 Score = 124 (48.7 bits), Expect = 1.8e-06, P = 1.8e-06
 Identities = 37/89 (41%), Positives = 50/89 (56%)

Query:    24 YPSQSNSFSMLFSMPNH-KSYDETDMYA-FMSPSSVDCTLSLGTPSTRLSDDDEKRIRHD 81
             Y + SN FSM FS  N  +++   D Y  F S +SVDCTLSLGTPSTRL  DD  R    
Sbjct:     4 YQTNSN-FSMFFSSENDDQNHHNYDPYNNFSSSTSVDCTLSLGTPSTRL--DDHHRF--- 57

Query:    82 QRRSASNCMTDFCWDFLHTKNSPYNTAHK 110
                +++N   DF   ++H  N+  ++  K
Sbjct:    58 SSANSNNISGDF---YIHGGNAKTSSYKK 83

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2115195 GATA19 "GATA transcription factor 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 123 (48.4 bits), Expect = 2.7e-06, P = 2.7e-06
 Identities = 33/69 (47%), Positives = 41/69 (59%)

Query:    31 FSMLFSMPNHKSYDETDMYAFMSPSSVDCTLSLGTPSTRLSDDDEKRIRHDQRRSASNCM 90
             FSM FS  N  S+  +  YA     SVDCTLSLGTPSTRL ++D      D+RR +S+  
Sbjct:     3 FSMFFSPENDVSHHSSP-YA-----SVDCTLSLGTPSTRLCNED------DERRFSSHTS 50

Query:    91 TDFCWDFLH 99
                 WDFL+
Sbjct:    51 DTIGWDFLN 59


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.132   0.397    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      242       197   0.00082  111 3  11 22  0.41    32
                                                     31  0.44    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  603 (64 KB)
  Total size of DFA:  168 KB (2098 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.49u 0.15s 15.64t   Elapsed:  00:00:01
  Total cpu time:  15.49u 0.15s 15.64t   Elapsed:  00:00:01
  Start:  Mon May 20 15:06:13 2013   End:  Mon May 20 15:06:14 2013

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	242
cd00202	54	ZnF_GATA Zinc finger DNA binding domain; binds spe	99.29
PF00320	36	GATA: GATA zinc finger; InterPro: IPR000679 Zinc f	99.29
smart00401	52	ZnF_GATA zinc finger binding to DNA consensus sequ	99.19
KOG1601	340	consensus GATA-4/5/6 transcription factors [Transc	98.46
COG5641	498	GAT1 GATA Zn-finger-containing transcription facto	97.61

>cd00202 ZnF_GATA Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

Probab=99.29  E-value=1.1e-12  Score=93.39  Aligned_cols=38  Identities=21%  Similarity=0.176  Sum_probs=33.5

Q ss_pred             CCcccCCCCccccCCCCccccccchhhhhhhhhhhcccchhhhh
Q 026188          136 PAVVLTVTPLLHRFGETVLEAQSHYAMLVEFGSRRKREEPQQQM  179 (242)
Q Consensus       136 ~~C~tt~TPlW~R~Gp~g~~~~~~~tLCNACGlr~kk~~~r~~~  179 (242)
                      .+|+++.||+| |+||.|..     .||||||+||++.....+.
T Consensus         3 ~~C~~~~Tp~W-R~g~~~~~-----~LCNaCgl~~~k~~~~rp~   40 (54)
T cd00202           3 SNCGTTTTPLW-RRGPSGGS-----TLCNACGLYWKKHGVMRPL   40 (54)
T ss_pred             CCCCCCCCccc-ccCCCCcc-----hHHHHHHHHHHhcCCCCCc
Confidence            99999999999 99998888     8999999999998744443

>PF00320 GATA: GATA zinc finger; InterPro: IPR000679 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.29  E-value=4.7e-13  Score=88.05  Aligned_cols=34  Identities=21%  Similarity=0.078  Sum_probs=27.8

Q ss_pred             CCcccCCCCccccCCCCccccccchhhhhhhhhhhcccch
Q 026188          136 PAVVLTVTPLLHRFGETVLEAQSHYAMLVEFGSRRKREEP  175 (242)
Q Consensus       136 ~~C~tt~TPlW~R~Gp~g~~~~~~~tLCNACGlr~kk~~~  175 (242)
                      .+|++++||+| |+||.|..     +||||||++|+|...
T Consensus         2 ~~C~tt~t~~W-R~~~~g~~-----~LCn~Cg~~~kk~~~   35 (36)
T PF00320_consen    2 SNCGTTETPQW-RRGPNGNR-----TLCNACGLYYKKYGK   35 (36)
T ss_dssp             TTT--ST-SSE-EEETTSEE------EEHHHHHHHHHHSS
T ss_pred             cCCcCCCCchh-hcCCCCCC-----HHHHHHHHHHHHhCC
Confidence            89999999999 99999998     899999999998753

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents GATA-type zinc fingers (Znf). A number of transcription factors (including erythroid-specific transcription factor and nitrogen regulatory proteins), specifically bind the DNA sequence (A/T)GATA(A/G) [] in the regulatory regions of genes. They are consequently termed GATA-binding transcription factors. The interactions occur via highly-conserved Znf domains in which the zinc ion is coordinated by 4 cysteine residues [, ]. NMR studies have shown the core of the Znf to comprise 2 irregular anti-parallel beta-sheets and an alpha-helix, followed by a long loop to the C-terminal end of the finger. The N-terminal part, which includes the helix, is similar in structure, but not sequence, to the N-terminal zinc module of the glucocorticoid receptor DNA-binding domain. The helix and the loop connecting the 2 beta-sheets interact with the major groove of the DNA, while the C-terminal tail wraps around into the minor groove. It is this tail that is the essential determinant of specific binding. Interactions between the Znf and DNA are mainly hydrophobic, explaining the preponderance of thymines in the binding site; a large number of interactions with the phosphate backbone have also been observed []. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 3GAT_A 2GAT_A 1GAU_A 1GAT_A 1Y0J_A 1GNF_A 2L6Z_A 2L6Y_A 3DFV_D 3DFX_B ....

>smart00401 ZnF_GATA zinc finger binding to DNA consensus sequence [AT]GATA[AG]

Probab=99.19  E-value=5.5e-12  Score=88.79  Aligned_cols=39  Identities=21%  Similarity=0.142  Sum_probs=35.3

Q ss_pred             ccccCCCCCCCcccCCCCccccCCCCccccccchhhhhhhhhhhcccchh
Q 026188          127 AAPAMIPSSPAVVLTVTPLLHRFGETVLEAQSHYAMLVEFGSRRKREEPQ  176 (242)
Q Consensus       127 ~~~c~~~~~~~C~tt~TPlW~R~Gp~g~~~~~~~tLCNACGlr~kk~~~r  176 (242)
                      .+.|     .+|+++.||+| |.||.|..     .||||||++|++....
T Consensus         3 ~~~C-----~~C~~~~T~~W-R~g~~g~~-----~LCnaCgl~~~k~~~~   41 (52)
T smart00401        3 GRSC-----SNCGTTETPLW-RRGPSGNK-----TLCNACGLYYKKHGGL   41 (52)
T ss_pred             CCCc-----CCCCCCCCCcc-ccCCCCCC-----cEeecccHHHHHcCCC
Confidence            4677     99999999999 99999997     8999999999987765

>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]

Probab=98.46  E-value=5.5e-08  Score=77.58  Aligned_cols=37  Identities=24%  Similarity=0.204  Sum_probs=33.6

Q ss_pred             ccccCCCCCCCcccCCCCccccCCCCccccccchhhhhhhhhhhcccc
Q 026188          127 AAPAMIPSSPAVVLTVTPLLHRFGETVLEAQSHYAMLVEFGSRRKREE  174 (242)
Q Consensus       127 ~~~c~~~~~~~C~tt~TPlW~R~Gp~g~~~~~~~tLCNACGlr~kk~~  174 (242)
                      ...|     .+|.++.||+| |.+|.|++     .+|||||++||+..
T Consensus       199 ~~~c-----~~~~~~~t~~~-r~~~~g~~-----~~cnacgl~~k~~~  235 (340)
T KOG1601|consen  199 LRQC-----SNCGTTKTPLW-RRGPEGPK-----SLCNACGLRYKKGG  235 (340)
T ss_pred             Cccc-----CCCCCCCCcce-ecCCCCCc-----cccccchhhhhhcC
Confidence            3667     99999999999 99999977     89999999999985

>COG5641 GAT1 GATA Zn-finger-containing transcription factor [Transcription]

Probab=97.61  E-value=2.2e-05  Score=76.92  Aligned_cols=42  Identities=17%  Similarity=0.037  Sum_probs=34.4

Q ss_pred             CCCccccCCCCCCCcccCCCCccccCCCC-----ccccccchhhhhhhhhhhcccchhh
Q 026188          124 PLVAAPAMIPSSPAVVLTVTPLLHRFGET-----VLEAQSHYAMLVEFGSRRKREEPQQ  177 (242)
Q Consensus       124 p~~~~~c~~~~~~~C~tt~TPlW~R~Gp~-----g~~~~~~~tLCNACGlr~kk~~~r~  177 (242)
                      +.....|     .+|.|+.||+| |+++.     |.      .|||||||++|-...-.
T Consensus       155 s~~~~vc-----~Nc~t~stPlw-rR~~~~~s~~~n------~lcnaCgl~~klhg~~r  201 (498)
T COG5641         155 SNQPHVC-----SNCKTTSTPLW-RRASSESSLPGN------NLCNACGLYLKLHGSPR  201 (498)
T ss_pred             ccccchh-----ccccccCCccc-cccccccccCCc------cccccccccccccCCcC
Confidence            3445578     99999999999 88888     65      49999999999876655

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	242
3dfx_A	63	Trans-acting T-cell-specific transcription factor	99.47
4gat_A	66	Nitrogen regulatory protein AREA; DNA binding prot	99.43
2vut_I	43	AREA, nitrogen regulatory protein AREA; transcript	99.35
1gnf_A	46	Transcription factor GATA-1; zinc finger, transcri	99.35
2kae_A	71	GATA-type transcription factor; zinc finger, GATA-	99.27
4hc9_A	115	Trans-acting T-cell-specific transcription factor;	99.25
4hc9_A	115	Trans-acting T-cell-specific transcription factor;	98.91

>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*

Probab=99.47  E-value=7.9e-15  Score=107.10  Aligned_cols=56  Identities=14%  Similarity=0.065  Sum_probs=43.0

Q ss_pred             CCccccCCCCCCCcccCCCCccccCCCCccccccchhhhhhhhhhhcccchhhhhhhccchhhhhccc
Q 026188          125 LVAAPAMIPSSPAVVLTVTPLLHRFGETVLEAQSHYAMLVEFGSRRKREEPQQQMQTAQTSRQQRSSH  192 (242)
Q Consensus       125 ~~~~~c~~~~~~~C~tt~TPlW~R~Gp~g~~~~~~~tLCNACGlr~kk~~~r~~~~~~~tsr~~r~sh  192 (242)
                      .....|     .+|+++.||+| |+||+|+      +|||||||+|++.............++.|++.
T Consensus         5 ~~~~~C-----~~C~tt~Tp~W-R~gp~G~------~LCNACGl~~~~~~~~RP~~~~~~~i~~R~Rk   60 (63)
T 3dfx_A            5 RAGTSC-----ANCQTTTTTLW-RRNANGD------PVCNACGLYYKLHNINRPLTMKKEGIQTRNRK   60 (63)
T ss_dssp             CTTCCC-----TTTCCSCCSSC-CCCTTSC------CCCHHHHHHHHHHSSCCCGGGCCSSCCCCC--
T ss_pred             CCCCcC-----CCcCCCCCCcc-CCCCCCC------chhhHHHHHHHHcCCCCCcCcCCCccccccCC
Confidence            345678     99999999999 9999997      59999999999987655555555555555544

>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*

Probab=99.43  E-value=1.5e-14  Score=106.22  Aligned_cols=55  Identities=13%  Similarity=0.040  Sum_probs=42.4

Q ss_pred             CCCccccCCCCCCCcccCCCCccccCCCCccccccchhhhhhhhhhhcccchhhhhhhccchhhhhc
Q 026188          124 PLVAAPAMIPSSPAVVLTVTPLLHRFGETVLEAQSHYAMLVEFGSRRKREEPQQQMQTAQTSRQQRS  190 (242)
Q Consensus       124 p~~~~~c~~~~~~~C~tt~TPlW~R~Gp~g~~~~~~~tLCNACGlr~kk~~~r~~~~~~~tsr~~r~  190 (242)
                      +.....|     .+|++++||+| |+||+|.      +||||||++|++.............++.|+
T Consensus         6 ~~~~~~C-----~~C~t~~Tp~W-R~gp~G~------~LCNaCGl~~~~~~~~RP~~~k~~~ik~R~   60 (66)
T 4gat_A            6 QNGPTTC-----TNCFTQTTPLW-RRNPEGQ------PLCNACGLFLKLHGVVRPLSLKTDVIKKRN   60 (66)
T ss_dssp             SSSSCCC-----TTTCCCCCSSC-EEETTTE------EECHHHHHHHHHHCSCCCGGGCCSCCCCCC
T ss_pred             CCCCCCC-----CCCCCCCCCcC-CcCCCCC------CccHHHHHHHHHcCCCCchhhccccccccc
Confidence            3456889     99999999999 9999997      599999999998766555554444444333

>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*

Probab=99.35  E-value=9.9e-14  Score=94.59  Aligned_cols=33  Identities=18%  Similarity=0.052  Sum_probs=30.4

Q ss_pred             CCcccCCCCccccCCCCccccccchhhhhhhhhhhcccch
Q 026188          136 PAVVLTVTPLLHRFGETVLEAQSHYAMLVEFGSRRKREEP  175 (242)
Q Consensus       136 ~~C~tt~TPlW~R~Gp~g~~~~~~~tLCNACGlr~kk~~~  175 (242)
                      .+|+++.||+| |+||+|+      .||||||+|||+...
T Consensus         5 ~~C~tt~Tp~W-R~gp~G~------~LCNaCGl~~k~~~~   37 (43)
T 2vut_I            5 TNCFTQTTPLW-RRNPEGQ------PLCNACGLFLKLHGV   37 (43)
T ss_dssp             SSSCCCCCSCC-EECTTSC------EECHHHHHHHHHHSS
T ss_pred             CccCCCCCCcc-ccCCCCC------cccHHHHHHHHHhCC
Confidence            99999999999 9999997      599999999998654

>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A

Probab=99.35  E-value=1.5e-13  Score=94.90  Aligned_cols=38  Identities=24%  Similarity=0.107  Sum_probs=33.4

Q ss_pred             ccccCCCCCCCcccCCCCccccCCCCccccccchhhhhhhhhhhcccchh
Q 026188          127 AAPAMIPSSPAVVLTVTPLLHRFGETVLEAQSHYAMLVEFGSRRKREEPQ  176 (242)
Q Consensus       127 ~~~c~~~~~~~C~tt~TPlW~R~Gp~g~~~~~~~tLCNACGlr~kk~~~r  176 (242)
                      ...|     .+|++++||+| |+||+|+      .||||||||||+....
T Consensus         4 ~~~C-----~~C~tt~Tp~W-R~gp~G~------~LCNaCGl~~k~~~~~   41 (46)
T 1gnf_A            4 AREC-----VNCGATATPLW-RRDRTGH------YLCNACGLYHKMNGQN   41 (46)
T ss_dssp             SCCC-----TTTCCCCCSSC-BCCTTCC------CBCSHHHHHHHHTCSC
T ss_pred             CCCC-----CCcCCCCCCcC-ccCCCCC------ccchHHHHHHHHcCCC
Confidence            4678     99999999999 9999996      5999999999987643

>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}

Probab=99.27  E-value=6.3e-13  Score=99.00  Aligned_cols=43  Identities=7%  Similarity=-0.137  Sum_probs=33.0

Q ss_pred             CccccCCCCCCCcccCCCCccccCCCCccccccchhhhhhhhhhhcccchhhhh
Q 026188          126 VAAPAMIPSSPAVVLTVTPLLHRFGETVLEAQSHYAMLVEFGSRRKREEPQQQM  179 (242)
Q Consensus       126 ~~~~c~~~~~~~C~tt~TPlW~R~Gp~g~~~~~~~tLCNACGlr~kk~~~r~~~  179 (242)
                      ....|     .+|+|+.||+| |+||.+..     +|||||||||++....+..
T Consensus         7 ~~~~C-----~nC~tt~Tp~W-Rrg~~~~g-----~LCNACGl~~~~~~~~RP~   49 (71)
T 2kae_A            7 KSFQC-----SNCSVTETIRW-RNIRSKEG-----IQCNACFIYQRKYNKTRPV   49 (71)
T ss_dssp             -CCCC-----SSSCCSCCSSC-CCCSSSSC-----CCSSHHHHHHHHHHSCCCT
T ss_pred             CCCcC-----CccCCCCCCcc-ccCCCCCC-----ccchHHHHHHHHhCCCCCc
Confidence            45778     99999999999 88544433     6999999999986554443

>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A

Probab=99.25  E-value=8e-13  Score=104.98  Aligned_cols=56  Identities=16%  Similarity=0.143  Sum_probs=44.5

Q ss_pred             CccccCCCCCCCcccCCCCccccCCCCccccccchhhhhhhhhhhcccchhhhhhhccchhhhhcccc
Q 026188          126 VAAPAMIPSSPAVVLTVTPLLHRFGETVLEAQSHYAMLVEFGSRRKREEPQQQMQTAQTSRQQRSSHM  193 (242)
Q Consensus       126 ~~~~c~~~~~~~C~tt~TPlW~R~Gp~g~~~~~~~tLCNACGlr~kk~~~r~~~~~~~tsr~~r~shm  193 (242)
                      ....|     .+|+++.||+| |+||+| +     +||||||++|++....+........++.|++.+
T Consensus        58 ~~~~C-----~~C~t~~tp~W-Rr~~~g-~-----~lCNaCgl~~~~~~~~rp~~~~~~~i~~r~r~~  113 (115)
T 4hc9_A           58 AGTSC-----ANCQTTTTTLW-RRNANG-D-----PVCNACGLYYKLHNINRPLTMKKEGIQTRNRKM  113 (115)
T ss_dssp             TTCCC-----TTTCCSCCSSC-EECTTS-C-----EECHHHHHHHHHHSSCCCGGGCCSSCCCCC---
T ss_pred             ccccC-----CCcCCCCccee-EECCCC-C-----CcchHHHHHHHHhCCCCCccccccchhhccccc
Confidence            45788     99999999999 999999 6     799999999998877766666666666666544

>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A

Probab=98.91  E-value=2.1e-10  Score=91.13  Aligned_cols=39  Identities=21%  Similarity=0.083  Sum_probs=32.1

Q ss_pred             CccccCCCCCCCcccCCCCccccCCCCccccccchhhhhhhhhhhcccchh
Q 026188          126 VAAPAMIPSSPAVVLTVTPLLHRFGETVLEAQSHYAMLVEFGSRRKREEPQ  176 (242)
Q Consensus       126 ~~~~c~~~~~~~C~tt~TPlW~R~Gp~g~~~~~~~tLCNACGlr~kk~~~r  176 (242)
                      +++.|     .+|+++.||+| |+||+|.      .||||||++|++....
T Consensus         4 ~~~~C-----~~Cg~~~Tp~W-Rr~~~g~------~lCnaCgl~~Kl~G~n   42 (115)
T 4hc9_A            4 MGREC-----VNCGATSTPLW-RRDGTGH------YLCNACGLYHKMNGQN   42 (115)
T ss_dssp             --CCC-----TTTCCSCCSSC-EECTTSC------EECHHHHHHHHHHSSC
T ss_pred             CCCCC-----CCCCCccCCcc-eECCCCC------CcCcchhhhhhhcccc
Confidence            45788     99999999999 8899994      6999999999865433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	242
d2vuti1	42	Erythroid transcription factor GATA-1 {Emericella	99.49
d1y0ja1	39	Erythroid transcription factor GATA-1 {Mouse (Mus	99.48
d3gata_	66	Erythroid transcription factor GATA-1 {Chicken (Ga	99.44

>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor GATA-1 {Emericella nidulans [TaxId: 162425]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Emericella nidulans [TaxId: 162425]

Probab=99.49  E-value=1.2e-15  Score=102.88  Aligned_cols=34  Identities=18%  Similarity=0.084  Sum_probs=30.4

Q ss_pred             CCCcccCCCCccccCCCCccccccchhhhhhhhhhhcccch
Q 026188          135 SPAVVLTVTPLLHRFGETVLEAQSHYAMLVEFGSRRKREEP  175 (242)
Q Consensus       135 ~~~C~tt~TPlW~R~Gp~g~~~~~~~tLCNACGlr~kk~~~  175 (242)
                      +.||++++||+| |+||+| +     +||||||||||+...
T Consensus         3 C~nC~tt~Tp~W-Rr~~~G-~-----~lCNACGl~~k~~g~   36 (42)
T d2vuti1           3 CTNCFTQTTPLW-RRNPEG-Q-----PLCNACGLFLKLHGV   36 (42)
T ss_dssp             CSSSCCCCCSCC-EECTTS-C-----EECHHHHHHHHHHSS
T ss_pred             CCCCCCCCCccc-eeCCCC-C-----CchhhhhHHHHHcCC
Confidence            499999999999 999999 4     799999999987654

>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.48  E-value=2.8e-15  Score=99.81  Aligned_cols=36  Identities=25%  Similarity=0.109  Sum_probs=32.0

Q ss_pred             ccccCCCCCCCcccCCCCccccCCCCccccccchhhhhhhhhhhcccc
Q 026188          127 AAPAMIPSSPAVVLTVTPLLHRFGETVLEAQSHYAMLVEFGSRRKREE  174 (242)
Q Consensus       127 ~~~c~~~~~~~C~tt~TPlW~R~Gp~g~~~~~~~tLCNACGlr~kk~~  174 (242)
                      ++.|     .+|++++||+| |+||+|.      +|||||||+||+.-
T Consensus         2 ~r~C-----~~Cgtt~Tp~W-R~gp~G~------~LCNACGl~~r~~G   37 (39)
T d1y0ja1           2 AREC-----VNCGATATPLW-RRDRTGH------YLCNACGLYHKMNG   37 (39)
T ss_dssp             CCCC-----SSSCCCCCSCC-EECTTSC------EECSSHHHHHHHSC
T ss_pred             cCCC-----CCCCCCCCccc-ccCCCCC------EeeHHhHHHHHHhC
Confidence            4678     99999999999 9999994      69999999998753

>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.44  E-value=6.2e-15  Score=106.95  Aligned_cols=48  Identities=15%  Similarity=0.113  Sum_probs=36.1

Q ss_pred             CCcccCCCCccccCCCCccccccchhhhhhhhhhhcccchhhhhhhccchhhhhc
Q 026188          136 PAVVLTVTPLLHRFGETVLEAQSHYAMLVEFGSRRKREEPQQQMQTAQTSRQQRS  190 (242)
Q Consensus       136 ~~C~tt~TPlW~R~Gp~g~~~~~~~tLCNACGlr~kk~~~r~~~~~~~tsr~~r~  190 (242)
                      .||+|++||+| |+||.| +     +|||||||||++.............++.++
T Consensus         8 ~nCgt~~Tp~W-Rr~~~G-~-----~lCNACGl~~~~~~~~RP~~~~~~~i~~r~   55 (66)
T d3gata_           8 SNCQTSTTTLW-RRSPMG-D-----PVCNACGLYYKLHQVNRPLTMRKDGIQTRN   55 (66)
T ss_dssp             TTTCCCCCSSE-EECTTS-C-----EEEHHHHHHHHHHCSCCCGGGCCSSCCCCS
T ss_pred             CCCCCCCCccc-ccCCCC-C-----cccchhHHHHHHhCCcCCcccccccccccc
Confidence            99999999999 999999 4     799999999998765444333333333333