Citrus Sinensis ID: 026207
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 241 | 2.2.26 [Sep-21-2011] | |||||||
| P51281 | 565 | Uncharacterized protein y | N/A | no | 0.846 | 0.361 | 0.643 | 2e-73 | |
| P49540 | 455 | Uncharacterized protein y | N/A | no | 0.780 | 0.413 | 0.645 | 2e-66 | |
| O19920 | 335 | Uncharacterized protein y | N/A | no | 0.904 | 0.650 | 0.462 | 1e-49 | |
| Q01367 | 307 | Stage III sporulation pro | yes | no | 0.556 | 0.436 | 0.302 | 1e-06 |
| >sp|P51281|YCF45_PORPU Uncharacterized protein ycf45 OS=Porphyra purpurea GN=ycf45 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 275 bits (703), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 132/205 (64%), Positives = 161/205 (78%), Gaps = 1/205 (0%)
Query: 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQV 86
D L +PGVGKTT +REIARVLSDE +KRVVI+DTSNEI GDGDIPH AIG ARRMQV
Sbjct: 124 DSILLLGKPGVGKTTAVREIARVLSDEMEKRVVIIDTSNEIAGDGDIPHPAIGRARRMQV 183
Query: 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIK 146
+P LQH+VMIEAVENHMPEVII+DEIGTE EA A R+IAERGV L+GTAHG +LE++IK
Sbjct: 184 AQPDLQHQVMIEAVENHMPEVIIIDEIGTELEALAARTIAERGVQLVGTAHGNYLESLIK 243
Query: 147 NPILSDLIGGVDTVTLGDEEARARRCQKSILERKAPPTFYFLIEMRERHYWVTH-KTEKS 205
NP L+DLIGG+ VTLGD+EA+ R QKSILERKA P F IE+ +R W+ H K E++
Sbjct: 244 NPTLADLIGGIQYVTLGDDEAKRRGTQKSILERKAAPAFQIAIEIHDRKAWIVHEKVEET 303
Query: 206 VDMLLRGKTPLVEIRKRDDRFNVVV 230
+D +L+G P V+ R+ D +++
Sbjct: 304 IDQILQGHQPFVQKRQIQDNGRILI 328
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Porphyra purpurea (taxid: 2787) |
| >sp|P49540|YCF45_ODOSI Uncharacterized protein ycf45 OS=Odontella sinensis GN=ycf45 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 252 bits (644), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 122/189 (64%), Positives = 148/189 (78%), Gaps = 1/189 (0%)
Query: 34 RPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQH 93
+PGVGKTT++REIARVLSDE +KRVVIVDTSNEI GD DIPHSAIG ARRMQV LQH
Sbjct: 131 KPGVGKTTIIREIARVLSDEMEKRVVIVDTSNEIAGDSDIPHSAIGRARRMQVATTDLQH 190
Query: 94 KVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKNPILSDL 153
++MIEAVENHMP+VI++DEIGTE EA A R+IAE+GV L+GT HG LEN+IKNP LSDL
Sbjct: 191 QIMIEAVENHMPQVIVIDEIGTELEALAARTIAEKGVQLVGTTHGNCLENLIKNPPLSDL 250
Query: 154 IGGVDTVTLGDEEARARRCQKSILERKAPPTFYFLIEMRERHYWVTHKTEK-SVDMLLRG 212
IGG+ +VTL D+EA+ R QKSI+ERKA P F IE+ + W H+ K S+D+LLR
Sbjct: 251 IGGIQSVTLSDDEAKRRGTQKSIIERKAYPAFQIAIEINTENSWTIHEDIKSSIDLLLRK 310
Query: 213 KTPLVEIRK 221
++R+
Sbjct: 311 SFTGTQVRE 319
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Odontella sinensis (taxid: 2839) |
| >sp|O19920|YCF45_CYACA Uncharacterized protein ycf45 OS=Cyanidium caldarium GN=ycf45 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 196 bits (498), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 104/225 (46%), Positives = 145/225 (64%), Gaps = 7/225 (3%)
Query: 3 RLRNVFLLIVKFFYALYSINKIIFDFF------LSYFRPGVGKTTVMREIARVLSDEFQK 56
R N+ L + I II D L RPG+GKT+ +REI+R+LS+E K
Sbjct: 94 RYGNIVGLTYRIGREFIGIGPIIRDLIESNQSTLLIGRPGIGKTSFIREISRILSNEIMK 153
Query: 57 RVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTE 116
RV+IVD++NEI G+G PH + G ARRM+V + QH+VMIEA+ENH PE+II+DEIGTE
Sbjct: 154 RVIIVDSANEISGEGCCPHISTGKARRMEVQSINSQHEVMIEAIENHTPEIIIIDEIGTE 213
Query: 117 AEAHACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQKSI 176
E+ A SI++RG+ LIG+AH L N+ KNP L L+GG+++VTL D +A R+ +K+I
Sbjct: 214 YESQAAISISQRGIRLIGSAHSSDLFNLAKNPTLCKLVGGIESVTLSDTQAILRKTKKTI 273
Query: 177 LERKAPPTFYFLIEM-RERHYWVTHKTEKSVDMLLRGKTPLVEIR 220
LERK F IE+ ++R V E+S+D +L G+ +IR
Sbjct: 274 LERKGCSCFNATIEINKKRTVKVYTSVEQSIDAILEGRVNNSQIR 318
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Cyanidium caldarium (taxid: 2771) |
| >sp|Q01367|SP3AA_BACSU Stage III sporulation protein AA OS=Bacillus subtilis (strain 168) GN=spoIIIAA PE=4 SV=1 | Back alignment and function description |
|---|
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 75/149 (50%), Gaps = 15/149 (10%)
Query: 11 IVKFFYALYSINKIIFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVV-----IVDTSN 65
++ + Y +N +I P GKTT++R++AR LS +K ++ IVD +
Sbjct: 127 LLPYLYQNSWLNTLIIG------PPQTGKTTLLRDLAR-LSSTGKKNMLPVKTGIVDERS 179
Query: 66 EIGGD-GDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRS 124
EI G IP G +R+ V + + + ++ + + PEV+IVDEIG + A
Sbjct: 180 EIAGCLRGIPQHQFG--QRIDVLDACPKAEGLMMMIRSMSPEVMIVDEIGRMEDTDALLE 237
Query: 125 IAERGVMLIGTAHGEWLENIIKNPILSDL 153
GV +I +AHG + +++K P L L
Sbjct: 238 ALHAGVSVIVSAHGWSISDLMKRPSLKRL 266
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Bacillus subtilis (strain 168) (taxid: 224308) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 241 | ||||||
| 357160507 | 388 | PREDICTED: uncharacterized protein ycf45 | 0.863 | 0.536 | 0.861 | 1e-102 | |
| 326506502 | 387 | predicted protein [Hordeum vulgare subsp | 0.863 | 0.537 | 0.852 | 1e-101 | |
| 15217492 | 379 | putative stage III sporulation protein A | 0.937 | 0.596 | 0.786 | 1e-101 | |
| 77553351 | 395 | expressed protein [Oryza sativa Japonica | 0.863 | 0.526 | 0.857 | 1e-101 | |
| 297846316 | 379 | hypothetical protein ARALYDRAFT_473506 [ | 0.937 | 0.596 | 0.786 | 1e-101 | |
| 226531438 | 390 | uncharacterized protein LOC100277737 [Ze | 0.863 | 0.533 | 0.857 | 1e-100 | |
| 222423588 | 379 | AT1G33290 [Arabidopsis thaliana] | 0.937 | 0.596 | 0.782 | 1e-100 | |
| 222616800 | 451 | hypothetical protein OsJ_35561 [Oryza sa | 0.838 | 0.447 | 0.871 | 1e-99 | |
| 218186582 | 484 | hypothetical protein OsI_37798 [Oryza sa | 0.838 | 0.417 | 0.871 | 2e-99 | |
| 255557835 | 412 | Stage III sporulation protein AA, putati | 0.846 | 0.495 | 0.848 | 1e-98 |
| >gi|357160507|ref|XP_003578787.1| PREDICTED: uncharacterized protein ycf45-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 375 bits (963), Expect = e-102, Method: Compositional matrix adjust.
Identities = 181/210 (86%), Positives = 195/210 (92%), Gaps = 2/210 (0%)
Query: 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVP 87
FL RPGVGKTTVMREIARVL+DEFQKRVVIVDTSNEIGGDGDIPH+AIG ARRMQVP
Sbjct: 177 LFLG--RPGVGKTTVMREIARVLADEFQKRVVIVDTSNEIGGDGDIPHAAIGGARRMQVP 234
Query: 88 EPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKN 147
EPS+QH+VMIEAVENHMPEV+IVDEIGTEAEA ACRSIAERGVMLIGTAHGE L NIIKN
Sbjct: 235 EPSMQHRVMIEAVENHMPEVVIVDEIGTEAEAQACRSIAERGVMLIGTAHGERLANIIKN 294
Query: 148 PILSDLIGGVDTVTLGDEEARARRCQKSILERKAPPTFYFLIEMRERHYWVTHKTEKSVD 207
P+LSDLIGGV+TVTLGDEEARARR QKSILERKAPPTF FLIEMRERHYWVTH+TE+SVD
Sbjct: 295 PVLSDLIGGVETVTLGDEEARARRTQKSILERKAPPTFPFLIEMRERHYWVTHRTERSVD 354
Query: 208 MLLRGKTPLVEIRKRDDRFNVVVDRWKTYD 237
MLL GK PLVE+RKRD+ F V+++RW TYD
Sbjct: 355 MLLHGKKPLVEVRKRDNEFQVIIERWATYD 384
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Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|326506502|dbj|BAJ86569.1| predicted protein [Hordeum vulgare subsp. vulgare] | Back alignment and taxonomy information |
|---|
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 179/210 (85%), Positives = 195/210 (92%), Gaps = 2/210 (0%)
Query: 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVP 87
FL RPGVGKTTVMREIARVL+DEFQKRVVIVDTSNEIGGDGDIPH+AIG ARRMQVP
Sbjct: 176 LFLG--RPGVGKTTVMREIARVLADEFQKRVVIVDTSNEIGGDGDIPHAAIGGARRMQVP 233
Query: 88 EPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKN 147
EPS+QH+VMIEAVENHMPEV+IVDEIGTE+EA ACRSIAERGVMLIGTAHGE L NIIKN
Sbjct: 234 EPSMQHRVMIEAVENHMPEVVIVDEIGTESEAQACRSIAERGVMLIGTAHGERLANIIKN 293
Query: 148 PILSDLIGGVDTVTLGDEEARARRCQKSILERKAPPTFYFLIEMRERHYWVTHKTEKSVD 207
P+LSDL+GGV+TVTLGDEEARARR QKSILERKAPPTF FLIEMRERHYWVTH+TE+SVD
Sbjct: 294 PVLSDLVGGVETVTLGDEEARARRTQKSILERKAPPTFPFLIEMRERHYWVTHRTERSVD 353
Query: 208 MLLRGKTPLVEIRKRDDRFNVVVDRWKTYD 237
MLL GK PLVE+RKRD+ F V+++RW TYD
Sbjct: 354 MLLHGKKPLVEVRKRDNEFQVIIERWATYD 383
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Source: Hordeum vulgare subsp. vulgare Species: Hordeum vulgare Genus: Hordeum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15217492|ref|NP_174599.1| putative stage III sporulation protein AA [Arabidopsis thaliana] gi|12322578|gb|AAG51292.1|AC027035_15 unknown protein [Arabidopsis thaliana] gi|48596989|gb|AAT46035.1| At1g33290 [Arabidopsis thaliana] gi|50198961|gb|AAT70483.1| At1g33290 [Arabidopsis thaliana] gi|332193460|gb|AEE31581.1| putative stage III sporulation protein AA [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust.
Identities = 181/230 (78%), Positives = 200/230 (86%), Gaps = 4/230 (1%)
Query: 12 VKFFYALYSINKIIFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDG 71
+ Y L K I L RPGVGKTTV+REIARVLSDEFQKRVVI+DTSNEIGGDG
Sbjct: 154 IDMLYDLLHYGKSI----LFVGRPGVGKTTVLREIARVLSDEFQKRVVIIDTSNEIGGDG 209
Query: 72 DIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVM 131
DIPHSAIG +RRMQVP+PSLQHKVMIEAVENHMP+VIIVDEIGTEAEA ACRSIAERGVM
Sbjct: 210 DIPHSAIGGSRRMQVPKPSLQHKVMIEAVENHMPQVIIVDEIGTEAEALACRSIAERGVM 269
Query: 132 LIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQKSILERKAPPTFYFLIEM 191
LIGTAHGE L+NIIKNP LSDLIGG++TVTLGDEEARARR QKSILERKAPPTFYFLIEM
Sbjct: 270 LIGTAHGEQLQNIIKNPTLSDLIGGIETVTLGDEEARARRSQKSILERKAPPTFYFLIEM 329
Query: 192 RERHYWVTHKTEKSVDMLLRGKTPLVEIRKRDDRFNVVVDRWKTYDRHDI 241
RER YW+ H+TEKSVDMLLRG+ P+VE+R+RD+ + VV++RWK YD I
Sbjct: 330 RERDYWIAHQTEKSVDMLLRGRNPMVEVRRRDEEYKVVIERWKAYDGQGI 379
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|77553351|gb|ABA96147.1| expressed protein [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust.
Identities = 180/210 (85%), Positives = 194/210 (92%), Gaps = 2/210 (0%)
Query: 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVP 87
FL RPGVGKTTVMREIARVL+DEFQKRVVIVDTSNEIGGDGDIPH+AIG ARRMQV
Sbjct: 184 LFLG--RPGVGKTTVMREIARVLADEFQKRVVIVDTSNEIGGDGDIPHAAIGGARRMQVA 241
Query: 88 EPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKN 147
+PS+QH+VMIEAVENHMPEV+IVDEIGTEAEA ACRSIAERGVMLIGTAHGE L NIIKN
Sbjct: 242 QPSMQHRVMIEAVENHMPEVVIVDEIGTEAEAQACRSIAERGVMLIGTAHGEHLANIIKN 301
Query: 148 PILSDLIGGVDTVTLGDEEARARRCQKSILERKAPPTFYFLIEMRERHYWVTHKTEKSVD 207
P LSDLIGGV+TVTLGDEEARARR QKSILERKAPPTF FLIEMRERHYWVTH+TE+SVD
Sbjct: 302 PTLSDLIGGVETVTLGDEEARARRSQKSILERKAPPTFPFLIEMRERHYWVTHRTERSVD 361
Query: 208 MLLRGKTPLVEIRKRDDRFNVVVDRWKTYD 237
MLL GK PLVE+RKRD++F VV++RW TYD
Sbjct: 362 MLLHGKKPLVEVRKRDNKFQVVIERWATYD 391
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297846316|ref|XP_002891039.1| hypothetical protein ARALYDRAFT_473506 [Arabidopsis lyrata subsp. lyrata] gi|297336881|gb|EFH67298.1| hypothetical protein ARALYDRAFT_473506 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 372 bits (954), Expect = e-101, Method: Compositional matrix adjust.
Identities = 181/230 (78%), Positives = 200/230 (86%), Gaps = 4/230 (1%)
Query: 12 VKFFYALYSINKIIFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDG 71
+ Y L K I L RPGVGKTTV+REIARVLSDEFQKRVVI+DTSNEIGGDG
Sbjct: 154 IDMLYDLLHYGKSI----LFVGRPGVGKTTVLREIARVLSDEFQKRVVIIDTSNEIGGDG 209
Query: 72 DIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVM 131
DIPHSAIG +RRMQVP+PSLQHKVMIEAVENHMP+VIIVDEIGTEAEA ACRSIAERGVM
Sbjct: 210 DIPHSAIGGSRRMQVPKPSLQHKVMIEAVENHMPQVIIVDEIGTEAEALACRSIAERGVM 269
Query: 132 LIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQKSILERKAPPTFYFLIEM 191
LIGTAHGE L+NIIKNP LSDLIGG++TVTLGDEEARARR QKSILERKAPPTFYFLIEM
Sbjct: 270 LIGTAHGEQLQNIIKNPTLSDLIGGIETVTLGDEEARARRTQKSILERKAPPTFYFLIEM 329
Query: 192 RERHYWVTHKTEKSVDMLLRGKTPLVEIRKRDDRFNVVVDRWKTYDRHDI 241
RER YW+ H+TEKSVDMLLRG+ P+VE+R+RD+ + VV++RWK YD I
Sbjct: 330 RERDYWIAHQTEKSVDMLLRGRNPMVEVRRRDEEYKVVIERWKAYDGQGI 379
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|226531438|ref|NP_001144701.1| uncharacterized protein LOC100277737 [Zea mays] gi|195645988|gb|ACG42462.1| hypothetical protein [Zea mays] gi|414865048|tpg|DAA43605.1| TPA: hypothetical protein ZEAMMB73_327805 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 180/210 (85%), Positives = 193/210 (91%), Gaps = 2/210 (0%)
Query: 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVP 87
FL RPGVGKTTVMREIARVL+DEFQKRVVIVDTSNEIGGDGD+PH+AIG ARRMQVP
Sbjct: 179 LFLG--RPGVGKTTVMREIARVLADEFQKRVVIVDTSNEIGGDGDVPHAAIGGARRMQVP 236
Query: 88 EPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKN 147
EPS+QH+VMIEAVENHMPEV+IVDEIGTEAEA ACRSIAERGVMLIGTAHGE L NIIKN
Sbjct: 237 EPSMQHRVMIEAVENHMPEVVIVDEIGTEAEAQACRSIAERGVMLIGTAHGERLANIIKN 296
Query: 148 PILSDLIGGVDTVTLGDEEARARRCQKSILERKAPPTFYFLIEMRERHYWVTHKTEKSVD 207
P LSDLIGGV+TVTLGD+EARARR QKSILERKAPPTF FLIEMRERHYWVTH+TE+SVD
Sbjct: 297 PTLSDLIGGVETVTLGDDEARARRSQKSILERKAPPTFPFLIEMRERHYWVTHRTERSVD 356
Query: 208 MLLRGKTPLVEIRKRDDRFNVVVDRWKTYD 237
MLL GK PLVE+RKRD F VV++RW TYD
Sbjct: 357 MLLHGKKPLVEVRKRDSEFQVVIERWATYD 386
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|222423588|dbj|BAH19763.1| AT1G33290 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 369 bits (947), Expect = e-100, Method: Compositional matrix adjust.
Identities = 180/230 (78%), Positives = 199/230 (86%), Gaps = 4/230 (1%)
Query: 12 VKFFYALYSINKIIFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDG 71
+ Y L K I L RPGVGKTTV+REIARVLSDEFQKRVVI+DTSNEI GDG
Sbjct: 154 IDMLYDLLHYGKSI----LFVGRPGVGKTTVLREIARVLSDEFQKRVVIIDTSNEIEGDG 209
Query: 72 DIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVM 131
DIPHSAIG +RRMQVP+PSLQHKVMIEAVENHMP+VIIVDEIGTEAEA ACRSIAERGVM
Sbjct: 210 DIPHSAIGGSRRMQVPKPSLQHKVMIEAVENHMPQVIIVDEIGTEAEALACRSIAERGVM 269
Query: 132 LIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQKSILERKAPPTFYFLIEM 191
LIGTAHGE L+NIIKNP LSDLIGG++TVTLGDEEARARR QKSILERKAPPTFYFLIEM
Sbjct: 270 LIGTAHGEQLQNIIKNPTLSDLIGGIETVTLGDEEARARRSQKSILERKAPPTFYFLIEM 329
Query: 192 RERHYWVTHKTEKSVDMLLRGKTPLVEIRKRDDRFNVVVDRWKTYDRHDI 241
RER YW+ H+TEKSVDMLLRG+ P+VE+R+RD+ + VV++RWK YD I
Sbjct: 330 RERDYWIAHQTEKSVDMLLRGRNPMVEVRRRDEEYKVVIERWKAYDGQGI 379
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|222616800|gb|EEE52932.1| hypothetical protein OsJ_35561 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 368 bits (944), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 176/202 (87%), Positives = 190/202 (94%)
Query: 34 RPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQH 93
RPGVGKTTVMREIARVL+DEFQKRVVIVDTSNEIGGDGDIPH+AIG ARRMQV +PS+QH
Sbjct: 167 RPGVGKTTVMREIARVLADEFQKRVVIVDTSNEIGGDGDIPHAAIGGARRMQVAQPSMQH 226
Query: 94 KVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKNPILSDL 153
+VMIEAVENHMPEV+IVDEIGTEAEA ACRSIAERGVMLIGTAHGE L NIIKNP LSDL
Sbjct: 227 RVMIEAVENHMPEVVIVDEIGTEAEAQACRSIAERGVMLIGTAHGEHLANIIKNPTLSDL 286
Query: 154 IGGVDTVTLGDEEARARRCQKSILERKAPPTFYFLIEMRERHYWVTHKTEKSVDMLLRGK 213
IGGV+TVTLGDEEARARR QKSILERKAPPTF FLIEMRERHYWVTH+TE+SVDMLL GK
Sbjct: 287 IGGVETVTLGDEEARARRSQKSILERKAPPTFPFLIEMRERHYWVTHRTERSVDMLLHGK 346
Query: 214 TPLVEIRKRDDRFNVVVDRWKT 235
PLVE+RKRD++F VV++RW T
Sbjct: 347 KPLVEVRKRDNKFQVVIERWAT 368
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|218186582|gb|EEC69009.1| hypothetical protein OsI_37798 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 367 bits (942), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 176/202 (87%), Positives = 190/202 (94%)
Query: 34 RPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQH 93
RPGVGKTTVMREIARVL+DEFQKRVVIVDTSNEIGGDGDIPH+AIG ARRMQV +PS+QH
Sbjct: 200 RPGVGKTTVMREIARVLADEFQKRVVIVDTSNEIGGDGDIPHAAIGGARRMQVAQPSMQH 259
Query: 94 KVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKNPILSDL 153
+VMIEAVENHMPEV+IVDEIGTEAEA ACRSIAERGVMLIGTAHGE L NIIKNP LSDL
Sbjct: 260 RVMIEAVENHMPEVVIVDEIGTEAEAQACRSIAERGVMLIGTAHGEHLANIIKNPTLSDL 319
Query: 154 IGGVDTVTLGDEEARARRCQKSILERKAPPTFYFLIEMRERHYWVTHKTEKSVDMLLRGK 213
IGGV+TVTLGDEEARARR QKSILERKAPPTF FLIEMRERHYWVTH+TE+SVDMLL GK
Sbjct: 320 IGGVETVTLGDEEARARRSQKSILERKAPPTFPFLIEMRERHYWVTHRTERSVDMLLHGK 379
Query: 214 TPLVEIRKRDDRFNVVVDRWKT 235
PLVE+RKRD++F VV++RW T
Sbjct: 380 KPLVEVRKRDNKFQVVIERWAT 401
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255557835|ref|XP_002519947.1| Stage III sporulation protein AA, putative [Ricinus communis] gi|223540993|gb|EEF42551.1| Stage III sporulation protein AA, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 365 bits (936), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 173/204 (84%), Positives = 190/204 (93%)
Query: 34 RPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQH 93
RPGVGKTTVMREIARVLSD+ KRVV+VDTSNEIGGDGDIPH+A+G ARRMQVP+PSLQH
Sbjct: 205 RPGVGKTTVMREIARVLSDKLDKRVVVVDTSNEIGGDGDIPHAAVGGARRMQVPDPSLQH 264
Query: 94 KVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKNPILSDL 153
KVMIEAVENHMPEVIIVDEIGTEAEA ACRSIAERG+MLIGTAHGE LENIIKNP LS+L
Sbjct: 265 KVMIEAVENHMPEVIIVDEIGTEAEALACRSIAERGIMLIGTAHGERLENIIKNPTLSNL 324
Query: 154 IGGVDTVTLGDEEARARRCQKSILERKAPPTFYFLIEMRERHYWVTHKTEKSVDMLLRGK 213
IGG++TV LGDEEARARR QKSILERK PPTFYFLIEMRERH+WVTH TEKSVDMLLRG+
Sbjct: 325 IGGIETVILGDEEARARRSQKSILERKGPPTFYFLIEMRERHHWVTHLTEKSVDMLLRGE 384
Query: 214 TPLVEIRKRDDRFNVVVDRWKTYD 237
P VE+R+R+D+F VV++RWK YD
Sbjct: 385 NPSVEVRRRNDQFKVVIERWKAYD 408
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 241 | ||||||
| TAIR|locus:2196690 | 379 | AT1G33290 [Arabidopsis thalian | 0.863 | 0.548 | 0.846 | 2.7e-93 | |
| UNIPROTKB|Q3Z8E0 | 509 | DET0777 "R3H domain protein" [ | 0.825 | 0.390 | 0.64 | 7.6e-64 | |
| TIGR_CMR|DET_0777 | 509 | DET_0777 "R3H domain protein" | 0.825 | 0.390 | 0.64 | 7.6e-64 | |
| TAIR|locus:2075825 | 684 | SPD1 "SEEDLING PLASTID DEVELOP | 0.775 | 0.273 | 0.659 | 2.4e-60 | |
| TAIR|locus:2032617 | 666 | AT1G73170 [Arabidopsis thalian | 0.821 | 0.297 | 0.58 | 3.6e-57 | |
| UNIPROTKB|Q81M38 | 308 | spoIIIAA "Stage III sporulatio | 0.489 | 0.383 | 0.322 | 1.1e-08 | |
| TIGR_CMR|BA_4417 | 308 | BA_4417 "stage III sporulation | 0.489 | 0.383 | 0.322 | 1.1e-08 | |
| UNIPROTKB|Q3AAK8 | 315 | CHY_2007 "Putative sporulation | 0.460 | 0.352 | 0.295 | 0.00015 | |
| TIGR_CMR|CHY_2007 | 315 | CHY_2007 "stage III sporulatio | 0.460 | 0.352 | 0.295 | 0.00015 |
| TAIR|locus:2196690 AT1G33290 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 929 (332.1 bits), Expect = 2.7e-93, P = 2.7e-93
Identities = 176/208 (84%), Positives = 194/208 (93%)
Query: 34 RPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQH 93
RPGVGKTTV+REIARVLSDEFQKRVVI+DTSNEIGGDGDIPHSAIG +RRMQVP+PSLQH
Sbjct: 172 RPGVGKTTVLREIARVLSDEFQKRVVIIDTSNEIGGDGDIPHSAIGGSRRMQVPKPSLQH 231
Query: 94 KVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKNPILSDL 153
KVMIEAVENHMP+VIIVDEIGTEAEA ACRSIAERGVMLIGTAHGE L+NIIKNP LSDL
Sbjct: 232 KVMIEAVENHMPQVIIVDEIGTEAEALACRSIAERGVMLIGTAHGEQLQNIIKNPTLSDL 291
Query: 154 IGGVDTVTLGDEEARARRCQKSILERKAPPTFYFLIEMRERHYWVTHKTEKSVDMLLRGK 213
IGG++TVTLGDEEARARR QKSILERKAPPTFYFLIEMRER YW+ H+TEKSVDMLLRG+
Sbjct: 292 IGGIETVTLGDEEARARRSQKSILERKAPPTFYFLIEMRERDYWIAHQTEKSVDMLLRGR 351
Query: 214 TPLVEIRKRDDRFNVVVDRWKTYDRHDI 241
P+VE+R+RD+ + VV++RWK YD I
Sbjct: 352 NPMVEVRRRDEEYKVVIERWKAYDGQGI 379
|
|
| UNIPROTKB|Q3Z8E0 DET0777 "R3H domain protein" [Dehalococcoides ethenogenes 195 (taxid:243164)] | Back alignment and assigned GO terms |
|---|
Score = 651 (234.2 bits), Expect = 7.6e-64, P = 7.6e-64
Identities = 128/200 (64%), Positives = 158/200 (79%)
Query: 34 RPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQH 93
RPGVGKTT++RE+ARVL+ + +KRVVIVDTSNEI GDGDIPH AIG ARRMQV P +QH
Sbjct: 133 RPGVGKTTMLREVARVLAGDLKKRVVIVDTSNEIAGDGDIPHPAIGHARRMQVRTPDMQH 192
Query: 94 KVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKNPILSDL 153
VMIEAVENHMP+VI++DEIGTE EA A R+IAERGV L+GTAHG L+N++ NP LSDL
Sbjct: 193 AVMIEAVENHMPQVIVIDEIGTELEALAARTIAERGVQLVGTAHGNVLDNLMLNPTLSDL 252
Query: 154 IGGVDTVTLGDEEARARRCQKSILERKAPPTFYFLIEMRERHYWVTHK-TEKSVDMLLRG 212
IGG+ +VTLGDEEAR R QK+ILER+APPTF ++E++ER+ H +VD +LRG
Sbjct: 253 IGGIQSVTLGDEEARRRGTQKTILERRAPPTFQVIVEIQERNKVAVHPDVGAAVDSILRG 312
Query: 213 KTPLVEIRKRDDRFNVVVDR 232
+P EIR D+ VV+ +
Sbjct: 313 VSPSSEIRYLDENGEVVISK 332
|
|
| TIGR_CMR|DET_0777 DET_0777 "R3H domain protein" [Dehalococcoides ethenogenes 195 (taxid:243164)] | Back alignment and assigned GO terms |
|---|
Score = 651 (234.2 bits), Expect = 7.6e-64, P = 7.6e-64
Identities = 128/200 (64%), Positives = 158/200 (79%)
Query: 34 RPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQH 93
RPGVGKTT++RE+ARVL+ + +KRVVIVDTSNEI GDGDIPH AIG ARRMQV P +QH
Sbjct: 133 RPGVGKTTMLREVARVLAGDLKKRVVIVDTSNEIAGDGDIPHPAIGHARRMQVRTPDMQH 192
Query: 94 KVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKNPILSDL 153
VMIEAVENHMP+VI++DEIGTE EA A R+IAERGV L+GTAHG L+N++ NP LSDL
Sbjct: 193 AVMIEAVENHMPQVIVIDEIGTELEALAARTIAERGVQLVGTAHGNVLDNLMLNPTLSDL 252
Query: 154 IGGVDTVTLGDEEARARRCQKSILERKAPPTFYFLIEMRERHYWVTHK-TEKSVDMLLRG 212
IGG+ +VTLGDEEAR R QK+ILER+APPTF ++E++ER+ H +VD +LRG
Sbjct: 253 IGGIQSVTLGDEEARRRGTQKTILERRAPPTFQVIVEIQERNKVAVHPDVGAAVDSILRG 312
Query: 213 KTPLVEIRKRDDRFNVVVDR 232
+P EIR D+ VV+ +
Sbjct: 313 VSPSSEIRYLDENGEVVISK 332
|
|
| TAIR|locus:2075825 SPD1 "SEEDLING PLASTID DEVELOPMENT 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 618 (222.6 bits), Expect = 2.4e-60, P = 2.4e-60
Identities = 124/188 (65%), Positives = 149/188 (79%)
Query: 35 PGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHK 94
PGVGKTT++REIAR+L+DE +KRVVIVDTSNEIGGDGD+PHS IG ARRMQVP +LQH
Sbjct: 222 PGVGKTTLIREIARMLADEHRKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNLQHD 281
Query: 95 VMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKNPILSDLI 154
VMIEAVENHMPE II+DEIGTE EA A +IA+RGV L+ TAHG ++NIIKNP L LI
Sbjct: 282 VMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVATAHGMTIDNIIKNPSLQILI 341
Query: 155 GGVDTVTLGDEEARARRCQKSILERKAPPTFYFLIEMRERHYWVTH-KTEKSVDMLLRGK 213
GG+++VTLGDEEAR R+ QK+ILERK PPTF +EM R H + + +VD +L GK
Sbjct: 342 GGIESVTLGDEEARKRKVQKTILERKGPPTFTCAVEMISRTECRVHQRLDVTVDAILAGK 401
Query: 214 TPLVEIRK 221
+ EIR+
Sbjct: 402 SAPFEIRQ 409
|
|
| TAIR|locus:2032617 AT1G73170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 588 (212.0 bits), Expect = 3.6e-57, P = 3.6e-57
Identities = 116/200 (58%), Positives = 152/200 (76%)
Query: 35 PGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHK 94
PGVGKTT++RE+AR+L ++++KRV+IVDTSNEIGGDGDIPH IG ARRMQVP +QHK
Sbjct: 206 PGVGKTTMIREVARMLGNDYEKRVMIVDTSNEIGGDGDIPHPGIGNARRMQVPNSDIQHK 265
Query: 95 VMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKNPILSDLI 154
V+IEAVENHMP+VI++DEIGT+ EA A +IAERG+ L+ TAHG +EN+IKNP L L+
Sbjct: 266 VLIEAVENHMPQVIVIDEIGTKLEAIAASTIAERGIQLVATAHGATIENLIKNPSLDLLV 325
Query: 155 GGVDTVTLGDEEARARRCQKSILERKAPPTFYFLIEMRERHYWVTHKT-EKSVDMLLRGK 213
GGV +VTLGDEEA R QK++LERK P TF E+ + H++ E +VD +L G+
Sbjct: 326 GGVQSVTLGDEEATRRGGQKTVLERKGPSTFNCGAEIVSKTEVRVHRSLEATVDAILAGR 385
Query: 214 TPLVEIRK-RDDRFNVVVDR 232
P VEIRK + V++++
Sbjct: 386 LPNVEIRKIKSHGVEVIMEK 405
|
|
| UNIPROTKB|Q81M38 spoIIIAA "Stage III sporulation protein AA" [Bacillus anthracis (taxid:1392)] | Back alignment and assigned GO terms |
|---|
Score = 150 (57.9 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 41/127 (32%), Positives = 68/127 (53%)
Query: 35 PGVGKTTVMREIARVLSD-----EFQK-RVVIVDTSNEIGGD-GDIPHSAIGTARRMQVP 87
P GKTT++R++AR +S E +V IVD +EI G IP GT R+ V
Sbjct: 143 PQTGKTTLLRDVARCMSQGVSASEIPSCKVGIVDERSEIAGCVKGIPQYDFGT--RVDVL 200
Query: 88 EPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKN 147
+ + + M+ + + P+++IVDEIG + ++ A GV L +AHG ++++K
Sbjct: 201 DACPKAEGMMMMIRSMSPDILIVDEIGRKEDSEAIMEAVHAGVQLFISAHGFSYDDVVKR 260
Query: 148 PILSDLI 154
P L ++
Sbjct: 261 PSLKAVL 267
|
|
| TIGR_CMR|BA_4417 BA_4417 "stage III sporulation protein AA" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 150 (57.9 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 41/127 (32%), Positives = 68/127 (53%)
Query: 35 PGVGKTTVMREIARVLSD-----EFQK-RVVIVDTSNEIGGD-GDIPHSAIGTARRMQVP 87
P GKTT++R++AR +S E +V IVD +EI G IP GT R+ V
Sbjct: 143 PQTGKTTLLRDVARCMSQGVSASEIPSCKVGIVDERSEIAGCVKGIPQYDFGT--RVDVL 200
Query: 88 EPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKN 147
+ + + M+ + + P+++IVDEIG + ++ A GV L +AHG ++++K
Sbjct: 201 DACPKAEGMMMMIRSMSPDILIVDEIGRKEDSEAIMEAVHAGVQLFISAHGFSYDDVVKR 260
Query: 148 PILSDLI 154
P L ++
Sbjct: 261 PSLKAVL 267
|
|
| UNIPROTKB|Q3AAK8 CHY_2007 "Putative sporulation protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 116 (45.9 bits), Expect = 0.00015, P = 0.00015
Identities = 36/122 (29%), Positives = 63/122 (51%)
Query: 35 PGVGKTTVMREIARVLSDEFQK------RVVIVDTSNEIGG--DGDIPHSAIGTARRMQV 86
P GKTT++R++AR+ ++ + V IVD +EI G+ P +G R V
Sbjct: 156 PRSGKTTMLRDLARIFANGSAQIGIPGIPVGIVDERSEIAACYKGE-PQLDVGI--RADV 212
Query: 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIK 146
+ + + MI + + P++I+ DEIG E + A +A GV + +AH ++++ K
Sbjct: 213 LDGCPKAQGMIILLRSMAPKLIVTDEIGREEDVGALIEVANAGVAVFTSAHARDMDDLKK 272
Query: 147 NP 148
P
Sbjct: 273 RP 274
|
|
| TIGR_CMR|CHY_2007 CHY_2007 "stage III sporulation protein AA" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 116 (45.9 bits), Expect = 0.00015, P = 0.00015
Identities = 36/122 (29%), Positives = 63/122 (51%)
Query: 35 PGVGKTTVMREIARVLSDEFQK------RVVIVDTSNEIGG--DGDIPHSAIGTARRMQV 86
P GKTT++R++AR+ ++ + V IVD +EI G+ P +G R V
Sbjct: 156 PRSGKTTMLRDLARIFANGSAQIGIPGIPVGIVDERSEIAACYKGE-PQLDVGI--RADV 212
Query: 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIK 146
+ + + MI + + P++I+ DEIG E + A +A GV + +AH ++++ K
Sbjct: 213 LDGCPKAQGMIILLRSMAPKLIVTDEIGREEDVGALIEVANAGVAVFTSAHARDMDDLKK 272
Query: 147 NP 148
P
Sbjct: 273 RP 274
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.324 0.140 0.416 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 241 241 0.00094 113 3 11 22 0.37 33
32 0.44 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 9
No. of states in DFA: 597 (63 KB)
Total size of DFA: 183 KB (2106 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 20.25u 0.11s 20.36t Elapsed: 00:00:00
Total cpu time: 20.25u 0.11s 20.36t Elapsed: 00:00:00
Start: Fri May 10 03:03:18 2013 End: Fri May 10 03:03:18 2013
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 241 | |||
| COG3854 | 308 | COG3854, SpoIIIAA, ncharacterized protein conserve | 1e-59 | |
| TIGR02858 | 270 | TIGR02858, spore_III_AA, stage III sporulation pro | 1e-16 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 2e-06 | |
| cd00009 | 151 | cd00009, AAA, The AAA+ (ATPases Associated with a | 7e-05 |
| >gnl|CDD|226372 COG3854, SpoIIIAA, ncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Score = 190 bits (484), Expect = 1e-59
Identities = 70/165 (42%), Positives = 93/165 (56%), Gaps = 6/165 (3%)
Query: 34 RPGVGKTTVMREIARVLSDEFQ----KRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEP 89
P VGKTT++R+IAR+LSD K+V I+D +EI G G RRM V +P
Sbjct: 145 PPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAG-CLNGVPQHGRGRRMDVLDP 203
Query: 90 SLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKNPI 149
+ + M+ A+ + PEVIIVDEIGTE +A A + GV LI TAHG +E++IK P
Sbjct: 204 CPKAEGMMMAIRSMSPEVIIVDEIGTEEDALAILTALHAGVKLITTAHGNGIEDLIKRPT 263
Query: 150 LSDLIGGVDTVTLGDEEARARRCQKSILERKAPPTFYFLIEMRER 194
L DL+ + G E +R R +L R APP F +E ER
Sbjct: 264 LKDLV-EIQAFDRGIELSRRRGPGTVVLIRDAPPNFKERVEGLER 307
|
Length = 308 |
| >gnl|CDD|234034 TIGR02858, spore_III_AA, stage III sporulation protein AA | Back alignment and domain information |
|---|
Score = 76.6 bits (189), Expect = 1e-16
Identities = 45/128 (35%), Positives = 71/128 (55%), Gaps = 11/128 (8%)
Query: 35 PGVGKTTVMREIARVLSDEFQK------RVVIVDTSNEIGG--DGDIPHSAIGTARRMQV 86
P GKTT++R++AR+LS + +V IVD +EI G +G +P +G R V
Sbjct: 120 PQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNG-VPQHDVGI--RTDV 176
Query: 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIK 146
+ + + M+ + + P+VI+VDEIG E + A GV +I TAHG +E++ K
Sbjct: 177 LDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEALHAGVSIIATAHGRDVEDLYK 236
Query: 147 NPILSDLI 154
P+ +LI
Sbjct: 237 RPVFKELI 244
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation [Cellular processes, Sporulation and germination]. Length = 270 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 2e-06
Identities = 31/146 (21%), Positives = 55/146 (37%), Gaps = 9/146 (6%)
Query: 34 RPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQH 93
PG GKTT+ R +AR V+ +D + + D I + L+
Sbjct: 10 PPGSGKTTLARALAR-ELGPPGGGVIYIDGEDILEEVLDQLL-LIIVGGKKASGSGELRL 67
Query: 94 KVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKNPILSDL 153
++ + P+V+I+DEI + E ++L+ L KN + +
Sbjct: 68 RLALALARKLKPDVLILDEIT-----SLLDAEQEALLLLLEELRLLLLLKSEKNLTV--I 120
Query: 154 IGGVDTVTLGDEEARARRCQKSILER 179
+ D LG R R ++ +L
Sbjct: 121 LTTNDEKDLGPALLRRRFDRRIVLLL 146
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 7e-05
Identities = 19/81 (23%), Positives = 29/81 (35%), Gaps = 13/81 (16%)
Query: 35 PGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHK 94
PG GKTT+ R IA + ++ S+ + G R +
Sbjct: 28 PGTGKTTLARAIAN-ELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLF--------- 77
Query: 95 VMIEAVENHMPEVIIVDEIGT 115
E E P V+ +DEI +
Sbjct: 78 ---ELAEKAKPGVLFIDEIDS 95
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. Length = 151 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 241 | |||
| COG1066 | 456 | Sms Predicted ATP-dependent serine protease [Postt | 99.97 | |
| COG3854 | 308 | SpoIIIAA ncharacterized protein conserved in bacte | 99.89 | |
| cd01121 | 372 | Sms Sms (bacterial radA) DNA repair protein. This | 99.87 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 99.85 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 99.84 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 99.83 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 99.82 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 99.82 | |
| TIGR00416 | 454 | sms DNA repair protein RadA. The gene protuct code | 99.8 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 99.78 | |
| COG2804 | 500 | PulE Type II secretory pathway, ATPase PulE/Tfp pi | 99.78 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 99.78 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 99.78 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 99.77 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 99.76 | |
| PRK11823 | 446 | DNA repair protein RadA; Provisional | 99.75 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 99.73 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 99.72 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 99.72 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 99.72 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 99.72 | |
| COG2805 | 353 | PilT Tfp pilus assembly protein, pilus retraction | 99.71 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 99.71 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 99.71 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 99.7 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 99.7 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 99.7 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 99.69 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 99.69 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 99.69 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 99.69 | |
| cd01129 | 264 | PulE-GspE PulE/GspE The type II secretory pathway | 99.69 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 99.68 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 99.68 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 99.68 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 99.68 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 99.68 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 99.68 | |
| PRK10436 | 462 | hypothetical protein; Provisional | 99.68 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 99.68 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 99.68 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 99.67 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 99.67 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 99.67 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 99.67 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 99.67 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.67 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 99.67 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 99.66 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 99.66 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 99.66 | |
| TIGR02525 | 372 | plasmid_TraJ plasmid transfer ATPase TraJ. Members | 99.66 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 99.66 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 99.66 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 99.66 | |
| TIGR02533 | 486 | type_II_gspE general secretory pathway protein E. | 99.66 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 99.66 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 99.66 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 99.66 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 99.66 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 99.65 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 99.65 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 99.65 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.65 | |
| TIGR02524 | 358 | dot_icm_DotB Dot/Icm secretion system ATPase DotB. | 99.65 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 99.65 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 99.65 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 99.65 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 99.65 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 99.64 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 99.64 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 99.64 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 99.64 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 99.64 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 99.64 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 99.64 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 99.64 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 99.64 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 99.64 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 99.64 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 99.64 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 99.64 | |
| TIGR02538 | 564 | type_IV_pilB type IV-A pilus assembly ATPase PilB. | 99.63 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 99.63 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.63 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 99.63 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 99.63 | |
| PF00437 | 270 | T2SE: Type II/IV secretion system protein; InterPr | 99.63 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 99.63 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 99.63 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 99.63 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 99.63 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 99.63 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 99.63 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 99.63 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 99.63 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.63 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 99.63 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 99.62 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 99.62 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 99.62 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 99.62 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 99.62 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 99.62 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.62 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 99.62 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 99.62 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.62 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 99.62 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 99.62 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 99.62 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 99.62 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 99.62 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.62 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 99.62 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 99.62 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 99.62 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.62 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 99.62 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.62 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 99.62 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 99.61 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 99.61 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.61 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 99.61 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 99.61 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.61 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 99.61 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 99.61 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.61 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 99.61 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 99.61 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 99.61 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 99.6 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 99.6 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 99.6 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 99.6 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 99.6 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 99.6 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 99.6 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 99.6 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 99.6 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 99.6 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 99.59 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 99.59 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 99.59 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 99.59 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 99.59 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 99.59 | |
| PRK13900 | 332 | type IV secretion system ATPase VirB11; Provisiona | 99.59 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 99.59 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 99.59 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 99.59 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 99.59 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 99.59 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 99.59 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.59 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 99.59 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 99.59 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.58 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.58 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 99.58 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 99.58 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 99.58 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.58 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 99.58 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 99.58 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 99.58 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.58 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 99.58 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.58 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 99.58 | |
| TIGR02782 | 299 | TrbB_P P-type conjugative transfer ATPase TrbB. Th | 99.58 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 99.57 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 99.57 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.57 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 99.57 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 99.57 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 99.57 | |
| PRK13851 | 344 | type IV secretion system protein VirB11; Provision | 99.57 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 99.57 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 99.57 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 99.57 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 99.57 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 99.57 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 99.57 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 99.57 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 99.57 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 99.57 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 99.56 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.56 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 99.56 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.56 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 99.56 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 99.56 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 99.56 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 99.56 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.56 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 99.56 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 99.56 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 99.55 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 99.55 | |
| PRK13833 | 323 | conjugal transfer protein TrbB; Provisional | 99.55 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 99.55 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 99.55 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 99.55 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 99.55 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 99.55 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.54 | |
| PRK13764 | 602 | ATPase; Provisional | 99.54 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 99.54 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.54 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 99.54 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 99.54 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 99.54 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 99.54 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.54 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 99.54 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 99.54 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 99.54 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 99.54 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 99.54 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 99.54 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 99.54 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.54 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 99.54 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.53 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 99.53 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 99.53 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 99.53 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 99.53 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 99.53 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 99.53 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 99.53 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 99.53 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 99.53 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 99.53 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.53 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 99.53 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 99.53 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 99.53 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 99.53 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 99.53 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 99.53 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 99.52 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 99.52 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.52 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 99.52 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 99.52 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 99.52 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 99.52 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 99.52 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 99.52 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.52 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 99.52 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.52 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 99.52 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 99.52 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 99.52 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 99.52 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.51 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 99.51 | |
| PRK13894 | 319 | conjugal transfer ATPase TrbB; Provisional | 99.51 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 99.51 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 99.51 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 99.51 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 99.51 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 99.51 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 99.51 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 99.51 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 99.51 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 99.51 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 99.51 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 99.51 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 99.5 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 99.5 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.5 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 99.5 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 99.5 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 99.5 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 99.49 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.49 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 99.49 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 99.49 | |
| TIGR03819 | 340 | heli_sec_ATPase helicase/secretion neighborhood AT | 99.49 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 99.49 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 99.49 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 99.49 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 99.49 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 99.49 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 99.49 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 99.49 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 99.49 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 99.48 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 99.48 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 99.48 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 99.48 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 99.48 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 99.48 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 99.48 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 99.48 | |
| COG5008 | 375 | PilU Tfp pilus assembly protein, ATPase PilU [Cell | 99.47 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 99.47 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 99.47 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 99.47 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 99.47 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 99.47 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 99.47 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 99.47 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.46 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 99.46 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 99.46 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 99.45 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 99.45 | |
| COG0630 | 312 | VirB11 Type IV secretory pathway, VirB11 component | 99.45 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 99.44 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 99.44 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 99.44 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.44 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 99.44 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 99.44 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.44 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 99.43 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 99.43 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 99.43 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 99.43 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 99.43 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.42 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 99.42 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 99.42 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 99.42 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 99.42 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 99.42 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.42 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 99.42 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 99.41 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 99.41 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 99.41 | |
| COG4962 | 355 | CpaF Flp pilus assembly protein, ATPase CpaF [Intr | 99.4 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 99.4 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 99.4 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 99.39 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 99.39 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 99.38 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 99.38 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 99.37 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 99.37 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 99.37 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 99.37 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 99.36 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 99.36 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 99.36 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 99.35 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 99.35 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 99.35 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 99.35 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 99.35 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 99.35 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 99.34 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 99.34 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.34 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 99.33 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 99.33 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 99.33 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 99.33 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 99.32 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 99.32 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 99.31 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 99.31 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 99.31 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 99.29 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.29 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 99.29 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.29 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 99.29 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 99.28 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 99.27 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 99.27 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 99.27 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.26 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 99.26 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.26 | |
| COG1618 | 179 | Predicted nucleotide kinase [Nucleotide transport | 99.25 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 99.25 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 99.23 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 99.23 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.23 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 99.22 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 99.22 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 99.22 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 99.22 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 99.22 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 99.21 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 99.21 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 99.21 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 99.2 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 99.2 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.19 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 99.19 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 99.19 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 99.19 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 99.18 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 99.18 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 99.18 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 99.18 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.17 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.17 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 99.17 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 99.16 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.14 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 99.14 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 99.13 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 99.12 | |
| TIGR03877 | 237 | thermo_KaiC_1 KaiC domain protein, Ph0284 family. | 99.08 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 99.07 | |
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 99.07 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 99.05 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 99.03 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 99.03 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.02 | |
| KOG0064 | 728 | consensus Peroxisomal long-chain acyl-CoA transpor | 99.02 | |
| PRK04328 | 249 | hypothetical protein; Provisional | 99.02 | |
| smart00534 | 185 | MUTSac ATPase domain of DNA mismatch repair MUTS f | 99.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 98.99 | |
| TIGR03880 | 224 | KaiC_arch_3 KaiC domain protein, AF_0351 family. T | 98.98 | |
| cd03277 | 213 | ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein | 98.98 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 98.98 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 98.97 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 98.96 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 98.95 | |
| TIGR03878 | 259 | thermo_KaiC_2 KaiC domain protein, AF_0795 family. | 98.95 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 98.95 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 98.95 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 98.94 | |
| PRK04296 | 190 | thymidine kinase; Provisional | 98.94 | |
| COG1855 | 604 | ATPase (PilT family) [General function prediction | 98.93 | |
| TIGR02237 | 209 | recomb_radB DNA repair and recombination protein R | 98.92 | |
| PRK09361 | 225 | radB DNA repair and recombination protein RadB; Pr | 98.92 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 98.91 | |
| TIGR02239 | 316 | recomb_RAD51 DNA repair protein RAD51. This eukary | 98.9 | |
| PRK09302 | 509 | circadian clock protein KaiC; Reviewed | 98.89 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 98.89 | |
| cd03284 | 216 | ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr | 98.89 | |
| TIGR03881 | 229 | KaiC_arch_4 KaiC domain protein, PAE1156 family. M | 98.88 | |
| TIGR02236 | 310 | recomb_radA DNA repair and recombination protein R | 98.87 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 98.87 | |
| cd03285 | 222 | ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS | 98.87 | |
| PF06745 | 226 | KaiC: KaiC; InterPro: IPR014774 This entry represe | 98.86 | |
| PRK13695 | 174 | putative NTPase; Provisional | 98.85 | |
| TIGR01069 | 771 | mutS2 MutS2 family protein. Function of MutS2 is u | 98.85 | |
| cd01394 | 218 | radB RadB. The archaeal protein radB shares simila | 98.84 | |
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 98.82 | |
| PLN03186 | 342 | DNA repair protein RAD51 homolog; Provisional | 98.81 | |
| PLN03187 | 344 | meiotic recombination protein DMC1 homolog; Provis | 98.77 | |
| PF03266 | 168 | NTPase_1: NTPase; InterPro: IPR004948 This entry r | 98.75 | |
| cd01122 | 271 | GP4d_helicase GP4d_helicase is a homohexameric 5'- | 98.73 | |
| PRK04301 | 317 | radA DNA repair and recombination protein RadA; Va | 98.72 | |
| TIGR02238 | 313 | recomb_DMC1 meiotic recombinase Dmc1. This model d | 98.72 | |
| cd01123 | 235 | Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r | 98.72 | |
| PRK09302 | 509 | circadian clock protein KaiC; Reviewed | 98.71 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 98.68 | |
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 98.67 | |
| PTZ00035 | 337 | Rad51 protein; Provisional | 98.66 | |
| cd03241 | 276 | ABC_RecN RecN ATPase involved in DNA repair; ABC ( | 98.64 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 98.64 | |
| cd03287 | 222 | ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS | 98.64 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 98.63 | |
| PRK05973 | 237 | replicative DNA helicase; Provisional | 98.62 | |
| PRK00409 | 782 | recombination and DNA strand exchange inhibitor pr | 98.58 | |
| KOG2355 | 291 | consensus Predicted ABC-type transport, ATPase com | 98.58 | |
| cd00984 | 242 | DnaB_C DnaB helicase C terminal domain. The hexame | 98.58 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 98.57 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 98.57 | |
| COG2401 | 593 | ABC-type ATPase fused to a predicted acetyltransfe | 98.57 | |
| PF13173 | 128 | AAA_14: AAA domain | 98.56 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 98.55 | |
| COG1222 | 406 | RPT1 ATP-dependent 26S proteasome regulatory subun | 98.55 | |
| cd01393 | 226 | recA_like RecA is a bacterial enzyme which has rol | 98.54 | |
| cd00983 | 325 | recA RecA is a bacterial enzyme which has roles in | 98.51 | |
| PF05496 | 233 | RuvB_N: Holliday junction DNA helicase ruvB N-term | 98.51 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 98.5 | |
| cd01125 | 239 | repA Hexameric Replicative Helicase RepA. RepA is | 98.49 | |
| CHL00195 | 489 | ycf46 Ycf46; Provisional | 98.48 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 98.46 | |
| TIGR02012 | 321 | tigrfam_recA protein RecA. This model describes or | 98.45 | |
| KOG0739 | 439 | consensus AAA+-type ATPase [Posttranslational modi | 98.44 | |
| KOG0734 | 752 | consensus AAA+-type ATPase containing the peptidas | 98.44 | |
| KOG0736 | 953 | consensus Peroxisome assembly factor 2 containing | 98.42 | |
| KOG0733 | 802 | consensus Nuclear AAA ATPase (VCP subfamily) [Post | 98.42 | |
| PF03308 | 266 | ArgK: ArgK protein; InterPro: IPR005129 Bacterial | 98.41 | |
| COG3910 | 233 | Predicted ATPase [General function prediction only | 98.4 | |
| PF13481 | 193 | AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C. | 98.39 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 98.38 | |
| PRK09354 | 349 | recA recombinase A; Provisional | 98.35 | |
| KOG0730 | 693 | consensus AAA+-type ATPase [Posttranslational modi | 98.35 | |
| KOG0733 | 802 | consensus Nuclear AAA ATPase (VCP subfamily) [Post | 98.34 | |
| PTZ00454 | 398 | 26S protease regulatory subunit 6B-like protein; P | 98.32 | |
| TIGR01241 | 495 | FtsH_fam ATP-dependent metalloprotease FtsH. HflB( | 98.31 | |
| CHL00176 | 638 | ftsH cell division protein; Validated | 98.31 | |
| KOG0727 | 408 | consensus 26S proteasome regulatory complex, ATPas | 98.3 |
| >COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.9e-31 Score=230.39 Aligned_cols=191 Identities=24% Similarity=0.353 Sum_probs=163.4
Q ss_pred eeeccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCC------cccHHHH
Q 026207 23 KIIFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEP------SLQHKVM 96 (241)
Q Consensus 23 ~~~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 96 (241)
-.+..++||.|.||.||||||.+++..++.. .+|+|++ ++|+ ++|...++.|+..... +.+.+.+
T Consensus 90 ~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~--~~vLYVs-GEES------~~QiklRA~RL~~~~~~l~l~aEt~~e~I 160 (456)
T COG1066 90 LVPGSVILIGGDPGIGKSTLLLQVAARLAKR--GKVLYVS-GEES------LQQIKLRADRLGLPTNNLYLLAETNLEDI 160 (456)
T ss_pred cccccEEEEccCCCCCHHHHHHHHHHHHHhc--CcEEEEe-CCcC------HHHHHHHHHHhCCCccceEEehhcCHHHH
Confidence 3444589999999999999999999999877 4999999 9888 6777788888876544 3478889
Q ss_pred HHHHHhcCCcEEEEcCCCCHHhH-----------------HHHHHHHhCCcEEEEeecCCChhhhhcCC-cccccccccc
Q 026207 97 IEAVENHMPEVIIVDEIGTEAEA-----------------HACRSIAERGVMLIGTAHGEWLENIIKNP-ILSDLIGGVD 158 (241)
Q Consensus 97 ~~~~l~~~p~vlilDE~~~~~d~-----------------~~~~~~~~~g~~vi~t~H~~~~~~~~~~p-~l~~l~~~~d 158 (241)
++.+...+|+++|+|+||+...+ +..+.++.+|++++.+-|.++ ++.+++| .++|| +|
T Consensus 161 ~~~l~~~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVGHVTK-eG~IAGPrvLEHm---VD 236 (456)
T COG1066 161 IAELEQEKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIVGHVTK-EGAIAGPRVLEHM---VD 236 (456)
T ss_pred HHHHHhcCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEEEEEEcc-cccccCchheeee---ee
Confidence 99999999999999999987655 223367888999999999999 9999999 89999 99
Q ss_pred EEEe--CChHHHHHHHHHhhhccCCCCCceEEEEEEcCce---------EEeec----chHHHHHHhcCCCcc-ceeeec
Q 026207 159 TVTL--GDEEARARRCQKSILERKAPPTFYFLIEMRERHY---------WVTHK----TEKSVDMLLRGKTPL-VEIRKR 222 (241)
Q Consensus 159 ~V~~--~~~~~~~~~~~~~~k~r~g~~~~~~~fe~~~~g~---------~~~~~----~~~~~~~~l~G~~~~-~e~~~~ 222 (241)
+|++ |++...+ |++|.+|||||++++.++|+|.+.|+ |+... .++++.+.+||+||+ +|+|++
T Consensus 237 tVlyFEGd~~~~~-RiLR~vKNRFG~t~EiGvFeM~~~GL~eV~npS~lFL~er~~~~~GS~v~~~~EGtRpllvEvQAL 315 (456)
T COG1066 237 TVLYFEGDRHSRY-RILRSVKNRFGATNELGVFEMTENGLREVSNPSALFLSERGEQTPGSAVVVVMEGTRPLLVEIQAL 315 (456)
T ss_pred EEEEEeccCCCce-eeeehhcccCCcccceeEEEEecCCeeEecCcHHhHhhcCCCCCCCcEEEEEEecccceEEEeeec
Confidence 9999 8887777 99999999999999999999999998 55542 368899999999999 599999
Q ss_pred cCCCc
Q 026207 223 DDRFN 227 (241)
Q Consensus 223 ~~~~~ 227 (241)
.....
T Consensus 316 v~~s~ 320 (456)
T COG1066 316 VSPSS 320 (456)
T ss_pred ccccc
Confidence 55544
|
|
| >COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-23 Score=171.25 Aligned_cols=150 Identities=41% Similarity=0.563 Sum_probs=131.1
Q ss_pred ccceeeEEEEEeEEeeCcce-ee-----c-cE-EEEEeCCCchHHHHHHHHHHhcccc----CCCeEEEEcCCcccCCCC
Q 026207 4 LRNVFLLIVKFFYALYSINK-II-----F-DF-FLSYFRPGVGKTTVMREIARVLSDE----FQKRVVIVDTSNEIGGDG 71 (241)
Q Consensus 4 ~~~~~~~~~r~~~~~~~~~~-~~-----~-g~-vll~Gp~GsGKTTLl~~l~~~l~~~----~g~~v~~i~~~~e~~~~~ 71 (241)
++|+.++.||+-+..++-.. .. + .+ ++++||||+||||+|+.+++.++.. .+.+|..+|+.+|+.+.
T Consensus 107 ~rdI~slniRv~r~v~Gt~~~li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~- 185 (308)
T COG3854 107 IRDISSLNIRVARQVFGTANPLIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGC- 185 (308)
T ss_pred eeeeceeeeeehhhhhccchHHHHHHHhcCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhcc-
Confidence 67899999999999987643 11 1 13 9999999999999999999999877 67899999999999874
Q ss_pred CCccccccchhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHHHHHhCCcEEEEeecCCChhhhhcCCccc
Q 026207 72 DIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKNPILS 151 (241)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~~~~~~g~~vi~t~H~~~~~~~~~~p~l~ 151 (241)
....+..++..|+++.+.+.+...++.+..++.|+++|+||++..+|..++..+...|+.+++|.|++..++++.+|.+.
T Consensus 186 ~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm~PEViIvDEIGt~~d~~A~~ta~~~GVkli~TaHG~~iedl~krp~lk 265 (308)
T COG3854 186 LNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSMSPEVIIVDEIGTEEDALAILTALHAGVKLITTAHGNGIEDLIKRPTLK 265 (308)
T ss_pred ccCCchhhhhhhhhhcccchHHHHHHHHHHhcCCcEEEEeccccHHHHHHHHHHHhcCcEEEEeeccccHHHhhcChhHH
Confidence 22334444556999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc
Q 026207 152 DLI 154 (241)
Q Consensus 152 ~l~ 154 (241)
+++
T Consensus 266 dlv 268 (308)
T COG3854 266 DLV 268 (308)
T ss_pred HHH
Confidence 984
|
|
| >cd01121 Sms Sms (bacterial radA) DNA repair protein | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.1e-22 Score=180.18 Aligned_cols=187 Identities=24% Similarity=0.371 Sum_probs=140.1
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCC------cccHHHHHHHHH
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEP------SLQHKVMIEAVE 101 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l 101 (241)
+++|.|+||+|||||+.+++..+.+. +.+++|++ .+|.. .+...++.++..... ......+++.+.
T Consensus 84 lvLI~G~pG~GKStLllq~a~~~a~~-g~~VlYvs-~EEs~------~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 84 VILIGGDPGIGKSTLLLQVAARLAKR-GGKVLYVS-GEESP------EQIKLRADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEEEE-CCcCH------HHHHHHHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 79999999999999999999988765 57899998 55542 222222233332211 234566677777
Q ss_pred hcCCcEEEEcCCCCHHhH-----------------HHHHHHHhCCcEEEEeecCCChhhhhcCC-ccccccccccEEEe-
Q 026207 102 NHMPEVIIVDEIGTEAEA-----------------HACRSIAERGVMLIGTAHGEWLENIIKNP-ILSDLIGGVDTVTL- 162 (241)
Q Consensus 102 ~~~p~vlilDE~~~~~d~-----------------~~~~~~~~~g~~vi~t~H~~~~~~~~~~p-~l~~l~~~~d~V~~- 162 (241)
..+|+++|+|+++..... .....+++.|++++.+.|.++ ++.+++| .++|+ +|.|++
T Consensus 156 ~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvghvtk-~g~~aG~~~leh~---vD~Vi~l 231 (372)
T cd01121 156 ELKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVGHVTK-EGSIAGPKVLEHM---VDTVLYF 231 (372)
T ss_pred hcCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccC-CCcccCcccchhh---ceEEEEE
Confidence 789999999999765321 112246788999999999987 6777888 78999 999998
Q ss_pred -CChHHHHHHHHHhhhccCCCCCceEEEEEEcCce---------EEeec----chHHHHHHhcCCCccc-eeeeccCCCc
Q 026207 163 -GDEEARARRCQKSILERKAPPTFYFLIEMRERHY---------WVTHK----TEKSVDMLLRGKTPLV-EIRKRDDRFN 227 (241)
Q Consensus 163 -~~~~~~~~~~~~~~k~r~g~~~~~~~fe~~~~g~---------~~~~~----~~~~~~~~l~G~~~~~-e~~~~~~~~~ 227 (241)
++..... |.++.+|+|++++++...|+|++.|+ |+... .++++.+.++|+||++ |+|++.....
T Consensus 232 e~~~~~~~-R~Lri~KnR~g~~~ei~~F~i~~~Gl~~v~~ps~~fl~~~~~~~~g~~~~~~~eg~r~~~~e~qal~~~~~ 310 (372)
T cd01121 232 EGDRHSEY-RILRSVKNRFGSTNELGVFEMRENGLREVSNPSELFLSEREEDVPGSAVTVVMEGSRPLLVEVQALVSPTS 310 (372)
T ss_pred EcCCCCcE-EEEEEEeCCCCCCCCEEEEEECCCCeEEccChhhheecCCCCCCCccEEEeeccCCcceeeEeehhccCCC
Confidence 5443333 88999999999999999999999998 44331 3688999999999994 9999965544
|
This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules. |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.2e-21 Score=158.29 Aligned_cols=140 Identities=20% Similarity=0.321 Sum_probs=103.7
Q ss_pred CccccceeeEEEEEeEEeeCcceeecc---------EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC-
Q 026207 1 MLRLRNVFLLIVKFFYALYSINKIIFD---------FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD- 70 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~~~~~g---------~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~- 70 (241)
|++++|+. +.|+....++| ++.|+||+|||||||+|++.++-.++.|. ++++ +..+...
T Consensus 2 mi~i~~l~--------K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~--I~i~-g~~~~~~~ 70 (240)
T COG1126 2 MIEIKNLS--------KSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGS--ITVD-GEDVGDKK 70 (240)
T ss_pred eEEEEeee--------EEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCce--EEEC-CEeccchh
Confidence 67777774 56777666665 69999999999999999999999888665 6666 3222100
Q ss_pred ----------------CCCccccc------------------------------cch----hhcCCCCCcccHHHHHHHH
Q 026207 71 ----------------GDIPHSAI------------------------------GTA----RRMQVPEPSLQHKVMIEAV 100 (241)
Q Consensus 71 ----------------~~~~~~~~------------------------------~~~----~~~~~~~~~~~~~~~~~~~ 100 (241)
...||... |.. .+-..+|+|++||++++++
T Consensus 71 ~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARA 150 (240)
T COG1126 71 DILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARA 150 (240)
T ss_pred hHHHHHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHH
Confidence 11122100 000 0122357788999999999
Q ss_pred HhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 101 ENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 101 l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+.++|+++++|||++.+||+... ..++.|.|++.++|.+. ...++ +|+|++
T Consensus 151 LaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~--------FAr~V---adrviF 208 (240)
T COG1126 151 LAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMG--------FAREV---ADRVIF 208 (240)
T ss_pred HcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhH--------HHHHh---hheEEE
Confidence 99999999999999999996543 56778999999999998 56667 899998
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-21 Score=157.95 Aligned_cols=147 Identities=21% Similarity=0.235 Sum_probs=105.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC--------CCCc-----------cccccc--------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD--------GDIP-----------HSAIGT-------- 80 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~--------~~~~-----------~~~~~~-------- 80 (241)
++.|.||||+||||+++.|+.++.|+.|. ++++ +-+...+ +..+ .+++.+
T Consensus 30 i~GlLG~NGAGKTT~LRmiatlL~P~~G~--v~id-g~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~ 106 (245)
T COG4555 30 ITGLLGENGAGKTTLLRMIATLLIPDSGK--VTID-GVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLS 106 (245)
T ss_pred EEEEEcCCCCCchhHHHHHHHhccCCCce--EEEe-ecccccChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHhhhh
Confidence 89999999999999999999999999655 5555 2111100 0000 000000
Q ss_pred ---------------------hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHH-------HHHHhCCcEE
Q 026207 81 ---------------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC-------RSIAERGVML 132 (241)
Q Consensus 81 ---------------------~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~-------~~~~~~g~~v 132 (241)
-+|..-+|.+++|++.+++++.|+|+++++|||.+++|..+. .+.++.|.++
T Consensus 107 ~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~v 186 (245)
T COG4555 107 RKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAV 186 (245)
T ss_pred hhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEE
Confidence 024555778899999999999999999999999999999543 3567779999
Q ss_pred EEeecCCChhhhhcCCccccccccccEEEe-CChHHHHHHHHHhhhccCCCCCceEE
Q 026207 133 IGTAHGEWLENIIKNPILSDLIGGVDTVTL-GDEEARARRCQKSILERKAPPTFYFL 188 (241)
Q Consensus 133 i~t~H~~~~~~~~~~p~l~~l~~~~d~V~~-~~~~~~~~~~~~~~k~r~g~~~~~~~ 188 (241)
++++|.+. +++.+ ||+|++ ..++..+.+...++..+.+..+.+.+
T Consensus 187 iFSSH~m~--------Eveal---CDrvivlh~Gevv~~gs~~~l~~r~~~~~le~~ 232 (245)
T COG4555 187 IFSSHIMQ--------EVEAL---CDRVIVLHKGEVVLEGSIEALDARTVLRNLEEI 232 (245)
T ss_pred EEecccHH--------HHHHh---hheEEEEecCcEEEcCCHHHHHHHHhhcCHHHH
Confidence 99999996 78888 999998 44444344666666666555444433
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.6e-20 Score=155.00 Aligned_cols=148 Identities=15% Similarity=0.204 Sum_probs=102.5
Q ss_pred CccccceeeEEEEEeE-EeeCcce--eecc-EEEEEeCCCchHHHHHHHHHHhccccCC---------------CeEEEE
Q 026207 1 MLRLRNVFLLIVKFFY-ALYSINK--IIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQ---------------KRVVIV 61 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~-~~~~~~~--~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g---------------~~v~~i 61 (241)
|++++|++ ++.-+ .++..++ +..| ++.|+||||+|||||++.++|.++|..| .++.|+
T Consensus 4 ~i~v~nl~---v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYV 80 (254)
T COG1121 4 MIEVENLT---VSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYV 80 (254)
T ss_pred EEEEeeeE---EEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEc
Confidence 45677774 33331 3555543 3333 8999999999999999999999887732 356777
Q ss_pred cCCcccCCC-----------CCCccc-ccc----------------------chhhcCCCCCcccHHHHHHHHHhcCCcE
Q 026207 62 DTSNEIGGD-----------GDIPHS-AIG----------------------TARRMQVPEPSLQHKVMIEAVENHMPEV 107 (241)
Q Consensus 62 ~~~~e~~~~-----------~~~~~~-~~~----------------------~~~~~~~~~~~~~~~~~~~~~l~~~p~v 107 (241)
++..++... +..... .+. .-+++..+|+|++||+.+|+|+.++|++
T Consensus 81 PQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~l 160 (254)
T COG1121 81 PQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDL 160 (254)
T ss_pred CcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCE
Confidence 654322110 000000 000 0135677889999999999999999999
Q ss_pred EEEcCCCCHHhHHHH-------HHHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 108 IIVDEIGTEAEAHAC-------RSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 108 lilDE~~~~~d~~~~-------~~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++||||+.+.|+... .+.++.|++|++++|... .+.+. +|+|++
T Consensus 161 llLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~--------~v~~~---~D~vi~ 211 (254)
T COG1121 161 LLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG--------LVMAY---FDRVIC 211 (254)
T ss_pred EEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH--------HhHhh---CCEEEE
Confidence 999999999999432 355666999999999997 44455 788887
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.7e-20 Score=156.75 Aligned_cols=124 Identities=19% Similarity=0.270 Sum_probs=87.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCC---------CCCcccc-cc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGD---------GDIPHSA-IG 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~---------~~~~~~~-~~ 79 (241)
++.|.||||||||||++++++.+++..|. ++.|+++....... +..|+.. .+
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~ 109 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFG 109 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCccccccc
Confidence 89999999999999999999999977432 34455433222110 1111110 00
Q ss_pred ----------------------chhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHH-------HHH-HhCC
Q 026207 80 ----------------------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC-------RSI-AERG 129 (241)
Q Consensus 80 ----------------------~~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~-------~~~-~~~g 129 (241)
..+.+..+|+|.+|++.+++++.++|+++++|||++.+|.... ... .++|
T Consensus 110 ~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~ 189 (258)
T COG1120 110 RPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKG 189 (258)
T ss_pred CCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcC
Confidence 0023455788899999999999999999999999999999432 233 3669
Q ss_pred cEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 130 VMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 130 ~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
.++++++|..+ ..... ||.+++
T Consensus 190 ~tvv~vlHDlN--------~A~ry---ad~~i~ 211 (258)
T COG1120 190 LTVVMVLHDLN--------LAARY---ADHLIL 211 (258)
T ss_pred CEEEEEecCHH--------HHHHh---CCEEEE
Confidence 99999999998 33333 788777
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.9e-20 Score=155.13 Aligned_cols=143 Identities=20% Similarity=0.234 Sum_probs=103.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCC----C-CCCccc------------c--c----c-----
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGG----D-GDIPHS------------A--I----G----- 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~----~-~~~~~~------------~--~----~----- 79 (241)
+..+.||||+||||++++|++.+.++.|. +.+. +.++.. . ++.|.. . + |
T Consensus 30 i~GllG~NGAGKTTtfRmILglle~~~G~--I~~~-g~~~~~~~~~rIGyLPEERGLy~k~tv~dql~yla~LkGm~~~e 106 (300)
T COG4152 30 IFGLLGPNGAGKTTTFRMILGLLEPTEGE--ITWN-GGPLSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAE 106 (300)
T ss_pred EEEeecCCCCCccchHHHHhccCCccCce--EEEc-CcchhhhhhhhcccChhhhccCccCcHHHHHHHHHHhcCCcHHH
Confidence 79999999999999999999999987554 3333 111100 0 111110 0 0 0
Q ss_pred -------ch----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHH-------HHHHHHhCCcEEEEe
Q 026207 80 -------TA----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGT 135 (241)
Q Consensus 80 -------~~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~-------~~~~~~~~g~~vi~t 135 (241)
+. ..+..+|.+.+|+..+-+++.|+|+++|||||++++||- .+...++.|.|||.|
T Consensus 107 ~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifS 186 (300)
T COG4152 107 IQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFS 186 (300)
T ss_pred HHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEe
Confidence 00 123446677899999999999999999999999999993 334677899999999
Q ss_pred ecCCChhhhhcCCccccccccccEEEe-CChHHHHHHHHHhhhccCCCCC
Q 026207 136 AHGEWLENIIKNPILSDLIGGVDTVTL-GDEEARARRCQKSILERKAPPT 184 (241)
Q Consensus 136 ~H~~~~~~~~~~p~l~~l~~~~d~V~~-~~~~~~~~~~~~~~k~r~g~~~ 184 (241)
+|.+. .++.+ ||++++ .++.....+....+++.+|...
T Consensus 187 sH~Me--------~vEeL---CD~llmL~kG~~V~~G~v~~ir~~~Gkk~ 225 (300)
T COG4152 187 SHRME--------HVEEL---CDRLLMLKKGQTVLYGTVEDIRRSFGKKR 225 (300)
T ss_pred cchHH--------HHHHH---hhhhheecCCceEEeccHHHHHHhcCCce
Confidence 99998 78888 999988 4444444477777777777654
|
|
| >TIGR00416 sms DNA repair protein RadA | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.2e-20 Score=169.44 Aligned_cols=186 Identities=26% Similarity=0.385 Sum_probs=137.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCC------CcccHHHHHHHHH
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPE------PSLQHKVMIEAVE 101 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l 101 (241)
+++|.|+||+|||||+.+++....+. +.+++|++ .+|.. .+...++.++.... .......+.+.+.
T Consensus 96 vilI~G~pGsGKTTL~lq~a~~~a~~-g~kvlYvs-~EEs~------~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~ 167 (454)
T TIGR00416 96 LILIGGDPGIGKSTLLLQVACQLAKN-QMKVLYVS-GEESL------QQIKMRAIRLGLPEPNLYVLSETNWEQICANIE 167 (454)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc-CCcEEEEE-CcCCH------HHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHH
Confidence 79999999999999999999887655 56899998 66552 22222222222211 1234566666777
Q ss_pred hcCCcEEEEcCCCCHHhH------------H-----HHHHHHhCCcEEEEeecCCChhhhhcCC-ccccccccccEEEe-
Q 026207 102 NHMPEVIIVDEIGTEAEA------------H-----ACRSIAERGVMLIGTAHGEWLENIIKNP-ILSDLIGGVDTVTL- 162 (241)
Q Consensus 102 ~~~p~vlilDE~~~~~d~------------~-----~~~~~~~~g~~vi~t~H~~~~~~~~~~p-~l~~l~~~~d~V~~- 162 (241)
..+|+++|+|++++.... . ....+++.|++++.+.|.++ ++.+++| .++++ +|.|++
T Consensus 168 ~~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtk-eg~~aG~~~le~l---vD~VI~L 243 (454)
T TIGR00416 168 EENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTK-EGSIAGPKVLEHM---VDTVLYF 243 (454)
T ss_pred hcCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEecccc-CCccCCcccEeee---ceEEEEE
Confidence 789999999999865321 1 11246788999999999997 7778888 68999 999998
Q ss_pred -CChHHHHHHHHHhhhccCCCCCceEEEEEEcCce---------EEeec----chHHHHHHhcCCCcc-ceeeeccCCC
Q 026207 163 -GDEEARARRCQKSILERKAPPTFYFLIEMRERHY---------WVTHK----TEKSVDMLLRGKTPL-VEIRKRDDRF 226 (241)
Q Consensus 163 -~~~~~~~~~~~~~~k~r~g~~~~~~~fe~~~~g~---------~~~~~----~~~~~~~~l~G~~~~-~e~~~~~~~~ 226 (241)
++..... |.++.+|+|+|+++....|+|+++|+ |+... .++++.+.++|.+|+ +|+|++....
T Consensus 244 e~~~~~~~-R~L~v~K~R~g~~~e~~~f~it~~Gl~~v~~ps~~f~~~~~~~~~g~~~~~~~~G~r~~~veVqalv~~~ 321 (454)
T TIGR00416 244 EGDRDSRF-RILRSVKNRFGATNEIGIFEMTEQGLREVLNPSAIFLSRREEPMSGSSITVTWEGTRPLLVEIQALVSPT 321 (454)
T ss_pred eccCCCcE-EEEEEecCCCCCCCcEEEEEEecCCceecCChhHhhhccCCCCCCceEEEEEEEcccCEEEEEEEEecCC
Confidence 4333333 78999999999999999999999998 33321 357889999999998 5999995444
|
The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)). |
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.5e-19 Score=148.53 Aligned_cols=146 Identities=20% Similarity=0.210 Sum_probs=100.1
Q ss_pred CccccceeeEEEEEeEEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCC--------
Q 026207 1 MLRLRNVFLLIVKFFYALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGG-------- 69 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~-------- 69 (241)
|++++||++..- -+...... .+..| ++.++||+||||||+|++|.+++.++.|. ++++ +.++..
T Consensus 1 MI~~~nvsk~y~--~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~--I~i~-g~~i~~~d~~~LRr 75 (309)
T COG1125 1 MIEFENVSKRYG--NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGE--ILID-GEDISDLDPVELRR 75 (309)
T ss_pred CceeeeeehhcC--CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCce--EEEC-CeecccCCHHHHHH
Confidence 899999974322 11122221 23333 89999999999999999999999999766 6665 333221
Q ss_pred C--------CCCccccc----c-------c-----------------------h-hhcCCCCCcccHHHHHHHHHhcCCc
Q 026207 70 D--------GDIPHSAI----G-------T-----------------------A-RRMQVPEPSLQHKVMIEAVENHMPE 106 (241)
Q Consensus 70 ~--------~~~~~~~~----~-------~-----------------------~-~~~~~~~~~~~~~~~~~~~l~~~p~ 106 (241)
. +..||... . + . +.-..+|+|.+||+.+++++..+|+
T Consensus 76 ~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ 155 (309)
T COG1125 76 KIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPP 155 (309)
T ss_pred hhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCC
Confidence 0 11122100 0 0 0 1122357788999999999999999
Q ss_pred EEEEcCCCCHHhHHHHH--------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 107 VIIVDEIGTEAEAHACR--------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 107 vlilDE~~~~~d~~~~~--------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++++|||++.+|+-... .-++-|.|+++++|..+ +..++ +|+|++
T Consensus 156 ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid--------EA~kL---adri~v 208 (309)
T COG1125 156 ILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID--------EALKL---ADRIAV 208 (309)
T ss_pred eEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH--------HHHhh---hceEEE
Confidence 99999999999993322 22456899999999998 55567 788887
|
|
| >COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.6e-19 Score=159.20 Aligned_cols=115 Identities=22% Similarity=0.243 Sum_probs=102.4
Q ss_pred eeeccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCC-cccHHHHHHHHH
Q 026207 23 KIIFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEP-SLQHKVMIEAVE 101 (241)
Q Consensus 23 ~~~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l 101 (241)
..++|++|++||+||||||+|.+++..+... ..++++++|+.|+..++. .|+++.+. ++.+...+++++
T Consensus 255 ~~p~GliLvTGPTGSGKTTTLY~~L~~ln~~-~~nI~TiEDPVE~~~~gI---------~Q~qVN~k~gltfa~~LRa~L 324 (500)
T COG2804 255 NRPQGLILVTGPTGSGKTTTLYAALSELNTP-ERNIITIEDPVEYQLPGI---------NQVQVNPKIGLTFARALRAIL 324 (500)
T ss_pred hCCCeEEEEeCCCCCCHHHHHHHHHHHhcCC-CceEEEeeCCeeeecCCc---------ceeecccccCCCHHHHHHHHh
Confidence 4788899999999999999999999988755 567999999999854432 36677666 899999999999
Q ss_pred hcCCcEEEEcCCCCHHhHHHHHHHHhCCcEEEEeecCCChhhhhcC
Q 026207 102 NHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKN 147 (241)
Q Consensus 102 ~~~p~vlilDE~~~~~d~~~~~~~~~~g~~vi~t~H~~~~~~~~~~ 147 (241)
+++||+|+++||++.+.++.+.+|+.+||.|++|.|.+++.+++.|
T Consensus 325 RqDPDvImVGEIRD~ETAeiavqAalTGHLVlSTlHtnda~~ai~R 370 (500)
T COG2804 325 RQDPDVIMVGEIRDLETAEIAVQAALTGHLVLSTLHTNDAPGAITR 370 (500)
T ss_pred ccCCCeEEEeccCCHHHHHHHHHHHhcCCeEeeecccCchHHHHHH
Confidence 9999999999999999999999999999999999999999888864
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.78 E-value=5e-19 Score=154.18 Aligned_cols=143 Identities=20% Similarity=0.283 Sum_probs=98.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC-----------------eEEEEcCCcccCCCCCC-------------c---
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK-----------------RVVIVDTSNEIGGDGDI-------------P--- 74 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-----------------~v~~i~~~~e~~~~~~~-------------~--- 74 (241)
+++|.||||||||||++++++.+.++.|. ++.|+.+.......... +
T Consensus 33 i~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~ 112 (293)
T COG1131 33 IFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEE 112 (293)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCChhH
Confidence 89999999999999999999999887432 23444322221110000 0
Q ss_pred -cc-------cccc----hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCC-cEEEE
Q 026207 75 -HS-------AIGT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERG-VMLIG 134 (241)
Q Consensus 75 -~~-------~~~~----~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g-~~vi~ 134 (241)
.. .++. ..++..+|.|++++..++.++.++|+++|+|||++++|+.... ..+..| .+|++
T Consensus 113 ~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvli 192 (293)
T COG1131 113 AEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILL 192 (293)
T ss_pred HHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEE
Confidence 00 0000 0123446778999999999999999999999999999995433 444555 89999
Q ss_pred eecCCChhhhhcCCccccccccccEEEe-CChHHHHHHHHHhhhccCC
Q 026207 135 TAHGEWLENIIKNPILSDLIGGVDTVTL-GDEEARARRCQKSILERKA 181 (241)
Q Consensus 135 t~H~~~~~~~~~~p~l~~l~~~~d~V~~-~~~~~~~~~~~~~~k~r~g 181 (241)
|+|..+ .++++ ||+|++ .++...+.+..+.+...++
T Consensus 193 ssH~l~--------e~~~~---~d~v~il~~G~~~~~g~~~~l~~~~~ 229 (293)
T COG1131 193 STHILE--------EAEEL---CDRVIILNDGKIIAEGTPEELKEKFG 229 (293)
T ss_pred eCCcHH--------HHHHh---CCEEEEEeCCEEEEeCCHHHHHHhhc
Confidence 999998 78888 999888 5554433355555555543
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.1e-18 Score=143.98 Aligned_cols=124 Identities=18% Similarity=0.123 Sum_probs=86.1
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC-------------eEEEEcCCcccCCCCCCcc------cccc--------c
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK-------------RVVIVDTSNEIGGDGDIPH------SAIG--------T 80 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-------------~v~~i~~~~e~~~~~~~~~------~~~~--------~ 80 (241)
++.|+||+|||||||++.++|+..++.|. ++.|+.+...+..+..+.. ...+ +
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~ 110 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARER 110 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhheehhhccccchHhHHHH
Confidence 89999999999999999999999988543 1222221111111000000 0000 0
Q ss_pred h--------------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH--------HHHhCCcEEEEeecC
Q 026207 81 A--------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR--------SIAERGVMLIGTAHG 138 (241)
Q Consensus 81 ~--------------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~--------~~~~~g~~vi~t~H~ 138 (241)
+ .+-..+|+||+||+++++++.++|+++++|||++.+|+.... ...+++.|+++++|.
T Consensus 111 a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHd 190 (248)
T COG1116 111 AKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHD 190 (248)
T ss_pred HHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCC
Confidence 0 112346789999999999999999999999999999994322 345678999999999
Q ss_pred CChhhhhcCCccccccccccEEEe
Q 026207 139 EWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 139 ~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
.+ +.-.+ +|+|++
T Consensus 191 i~--------EAv~L---sdRivv 203 (248)
T COG1116 191 VD--------EAVYL---ADRVVV 203 (248)
T ss_pred HH--------HHHhh---hCEEEE
Confidence 97 44456 888887
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.6e-18 Score=152.01 Aligned_cols=149 Identities=19% Similarity=0.175 Sum_probs=97.2
Q ss_pred CccccceeeEEEEEeEEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCC-----------------eEEE
Q 026207 1 MLRLRNVFLLIVKFFYALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK-----------------RVVI 60 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-----------------~v~~ 60 (241)
|++++|+..-.- -..++..+ .+..| ++.|.||||||||||++.|++.+.++.|. ++.|
T Consensus 7 ~i~i~~l~k~~~--~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~ 84 (306)
T PRK13537 7 PIDFRNVEKRYG--DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGV 84 (306)
T ss_pred eEEEEeEEEEEC--CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEE
Confidence 456666653211 01233332 33344 89999999999999999999999887442 2344
Q ss_pred EcCCcccCCCCCCccc------ccc--------c--------------hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcC
Q 026207 61 VDTSNEIGGDGDIPHS------AIG--------T--------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDE 112 (241)
Q Consensus 61 i~~~~e~~~~~~~~~~------~~~--------~--------------~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE 112 (241)
+.+...+.....+... ..+ . ...+..+|.+++++..+++++.++|+++|+||
T Consensus 85 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDE 164 (306)
T PRK13537 85 VPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDE 164 (306)
T ss_pred EeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 4322211110000000 000 0 01223456788999999999999999999999
Q ss_pred CCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 113 IGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 113 ~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
|++++|+.... +.++.|.++|.++|..+ .++.+ ||+|++
T Consensus 165 Pt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~--------e~~~~---~d~i~i 210 (306)
T PRK13537 165 PTTGLDPQARHLMWERLRSLLARGKTILLTTHFME--------EAERL---CDRLCV 210 (306)
T ss_pred CCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH--------HHHHh---CCEEEE
Confidence 99999995432 44456899999999997 67777 898887
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.3e-18 Score=152.89 Aligned_cols=139 Identities=20% Similarity=0.240 Sum_probs=93.1
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC-----------------eEEEEcCCcccCCCCCCccc------ccc-----
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK-----------------RVVIVDTSNEIGGDGDIPHS------AIG----- 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-----------------~v~~i~~~~e~~~~~~~~~~------~~~----- 79 (241)
++.|+||||||||||++.|++.++++.|. .+.|+.+...+.....+... ..+
T Consensus 69 i~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~ 148 (340)
T PRK13536 69 CFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTRE 148 (340)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHH
Confidence 89999999999999999999999877442 23344322211110000000 000
Q ss_pred ---c--------------hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEe
Q 026207 80 ---T--------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGT 135 (241)
Q Consensus 80 ---~--------------~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t 135 (241)
. ...+..+|.|++++..+++++.++|+++|+|||++++|+.... +..+.|.+++++
T Consensus 149 ~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilis 228 (340)
T PRK13536 149 IEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLT 228 (340)
T ss_pred HHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 0 0112335678899999999999999999999999999995433 334468999999
Q ss_pred ecCCChhhhhcCCccccccccccEEEe-CChHHHHHHHHHhhh
Q 026207 136 AHGEWLENIIKNPILSDLIGGVDTVTL-GDEEARARRCQKSIL 177 (241)
Q Consensus 136 ~H~~~~~~~~~~p~l~~l~~~~d~V~~-~~~~~~~~~~~~~~k 177 (241)
+|..+ .++++ ||+|++ .++.....+..++++
T Consensus 229 SH~l~--------e~~~~---~d~i~il~~G~i~~~g~~~~l~ 260 (340)
T PRK13536 229 THFME--------EAERL---CDRLCVLEAGRKIAEGRPHALI 260 (340)
T ss_pred CCCHH--------HHHHh---CCEEEEEECCEEEEEcCHHHHH
Confidence 99997 67777 899887 444333334444443
|
|
| >PRK11823 DNA repair protein RadA; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.9e-19 Score=160.91 Aligned_cols=185 Identities=25% Similarity=0.390 Sum_probs=135.1
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCC------CCcccHHHHHHHHH
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVP------EPSLQHKVMIEAVE 101 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l 101 (241)
+++|.|+||+|||||+.+++...... +.+++|++ .+|.. .+...++.++... ........+++.+.
T Consensus 82 ~~lI~G~pG~GKTtL~lq~a~~~a~~-g~~vlYvs-~Ees~------~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~ 153 (446)
T PRK11823 82 VVLIGGDPGIGKSTLLLQVAARLAAA-GGKVLYVS-GEESA------SQIKLRAERLGLPSDNLYLLAETNLEAILATIE 153 (446)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEE-ccccH------HHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHH
Confidence 79999999999999999999987644 67999998 55542 2222222233221 11234566667777
Q ss_pred hcCCcEEEEcCCCCHHhH------------H-----HHHHHHhCCcEEEEeecCCChhhhhcCC-ccccccccccEEEe-
Q 026207 102 NHMPEVIIVDEIGTEAEA------------H-----ACRSIAERGVMLIGTAHGEWLENIIKNP-ILSDLIGGVDTVTL- 162 (241)
Q Consensus 102 ~~~p~vlilDE~~~~~d~------------~-----~~~~~~~~g~~vi~t~H~~~~~~~~~~p-~l~~l~~~~d~V~~- 162 (241)
..+|+++|+|++++.... . ....+++.|++++.+.|.++ ++.+++| .++++ +|.|++
T Consensus 154 ~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ak~~~itvilv~hvtk-~~~~ag~~~lehl---vD~Vi~l 229 (446)
T PRK11823 154 EEKPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELMRLAKQRGIAVFLVGHVTK-EGAIAGPRVLEHM---VDTVLYF 229 (446)
T ss_pred hhCCCEEEEechhhhccccccCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeeccC-CCCcCCcchhhhh---CeEEEEE
Confidence 789999999999865421 1 12246778999999999987 6667777 68999 999998
Q ss_pred -CChHHHHHHHHHhhhccCCCCCceEEEEEEcCceE---------Eeec----chHHHHHHhcCCCcc-ceeeeccCC
Q 026207 163 -GDEEARARRCQKSILERKAPPTFYFLIEMRERHYW---------VTHK----TEKSVDMLLRGKTPL-VEIRKRDDR 225 (241)
Q Consensus 163 -~~~~~~~~~~~~~~k~r~g~~~~~~~fe~~~~g~~---------~~~~----~~~~~~~~l~G~~~~-~e~~~~~~~ 225 (241)
++..... |.++.+|+|+++++....|+|+++|+- +.+. .++++.+.++|.+|+ .|+|+....
T Consensus 230 e~~~~~~~-R~l~i~K~R~g~~~e~~~f~it~~Gi~~v~~ps~~~~~~~~~~~~g~~~~~~~~G~~~~~veVea~v~~ 306 (446)
T PRK11823 230 EGDRHSRY-RILRAVKNRFGATNEIGVFEMTEQGLREVSNPSELFLSERDENVPGSAVTVTMEGTRPLLVEIQALVSP 306 (446)
T ss_pred EcCCCCce-EEEEEccCCCCCCCceEEEEEcCCCceECCCHHHHHhcCCCCCCCceEEEEEEEcccceEEEEEEeecC
Confidence 4333333 889999999999998899999999983 3321 256778889999998 499998543
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.8e-17 Score=137.38 Aligned_cols=152 Identities=18% Similarity=0.236 Sum_probs=99.7
Q ss_pred EEEEeEEeeCcceeecc---------EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC-----------
Q 026207 11 IVKFFYALYSINKIIFD---------FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD----------- 70 (241)
Q Consensus 11 ~~r~~~~~~~~~~~~~g---------~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~----------- 70 (241)
.+|.++.-|+...+..+ ++.|.||+|||||||++.+.+++.|+.|. +.++ +.++..-
T Consensus 10 ~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~Ge--I~i~-G~~i~~ls~~~~~~ir~r 86 (263)
T COG1127 10 EVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGE--ILID-GEDIPQLSEEELYEIRKR 86 (263)
T ss_pred EEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCe--EEEc-CcchhccCHHHHHHHHhh
Confidence 34444555555444443 79999999999999999999999999654 3333 2221100
Q ss_pred -CCCccc-----------c--------------------------ccc----h-hhcCCCCCcccHHHHHHHHHhcCCcE
Q 026207 71 -GDIPHS-----------A--------------------------IGT----A-RRMQVPEPSLQHKVMIEAVENHMPEV 107 (241)
Q Consensus 71 -~~~~~~-----------~--------------------------~~~----~-~~~~~~~~~~~~~~~~~~~l~~~p~v 107 (241)
+...++ + .|. + ..-..+|++|+.|+++++|+..+|++
T Consensus 87 ~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPel 166 (263)
T COG1127 87 MGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPEL 166 (263)
T ss_pred eeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCE
Confidence 000000 0 000 0 01123567899999999999999999
Q ss_pred EEEcCCCCHHhHHHH-------HHHH-hCCcEEEEeecCCChhhhhcCCccccccccccEEEe-CChHHHHHHHHHhh
Q 026207 108 IIVDEIGTEAEAHAC-------RSIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL-GDEEARARRCQKSI 176 (241)
Q Consensus 108 lilDE~~~~~d~~~~-------~~~~-~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~-~~~~~~~~~~~~~~ 176 (241)
+++|||++++||-.. .... .-|.|+++++|..+ .+..+ ||+|.+ .++.....++.+++
T Consensus 167 l~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~--------s~~~i---~Drv~~L~~gkv~~~Gt~~el 233 (263)
T COG1127 167 LFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD--------SLLTI---ADRVAVLADGKVIAEGTPEEL 233 (263)
T ss_pred EEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH--------HHHhh---hceEEEEeCCEEEEeCCHHHH
Confidence 999999999999332 2222 34889999999997 67777 899887 55544333444444
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.1e-17 Score=131.12 Aligned_cols=118 Identities=18% Similarity=0.213 Sum_probs=86.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCC--CccccccchhhcCCCCCcccHHHHHHHHHhcCC
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGD--IPHSAIGTARRMQVPEPSLQHKVMIEAVENHMP 105 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p 105 (241)
+++|.||||||||||++.+++..++..|. ++++ +..+..... ......++. ..+|++++++..+++++..+|
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~~~~~G~--v~~~-g~~~~~~~~~~~~~~~i~~~---~qLS~G~~qrl~laral~~~p 101 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGLYKPDSGE--ILVD-GKEVSFASPRDARRAGIAMV---YQLSVGERQMVEIARALARNA 101 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCeE--EEEC-CEECCcCCHHHHHhcCeEEE---EecCHHHHHHHHHHHHHhcCC
Confidence 89999999999999999999999887554 5555 333321100 001112221 117889999999999999999
Q ss_pred cEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 106 EVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 106 ~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+++++|||++++|+.... +..+.|.++++++|... .+..+ +|+++.
T Consensus 102 ~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~--------~~~~~---~d~~~~ 154 (163)
T cd03216 102 RLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD--------EVFEI---ADRVTV 154 (163)
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH--------HHHHh---CCEEEE
Confidence 999999999999985432 33445889999999986 45555 777765
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-17 Score=140.89 Aligned_cols=126 Identities=21% Similarity=0.286 Sum_probs=88.1
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccC---------CC-CCCccc-------------------cc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIG---------GD-GDIPHS-------------------AI 78 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~---------~~-~~~~~~-------------------~~ 78 (241)
.++|+||||||||||++.+++.+.|..|. ++++ +.... .. +.+.+. +.
T Consensus 32 ~~~i~G~nGsGKSTL~~~l~GLl~p~~G~--v~~~-g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~ 108 (235)
T COG1122 32 RVLLIGPNGSGKSTLLKLLNGLLKPTSGE--VLVD-GLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENL 108 (235)
T ss_pred EEEEECCCCCCHHHHHHHHcCcCcCCCCE--EEEC-CeeccchhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhc
Confidence 89999999999999999999999988544 3443 11110 00 000000 00
Q ss_pred c------------------c----hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhC-
Q 026207 79 G------------------T----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAER- 128 (241)
Q Consensus 79 ~------------------~----~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~- 128 (241)
+ . -+....+|++++|+++++.++.++|+++++|||++++|+.... +....
T Consensus 109 g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~ 188 (235)
T COG1122 109 GLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEG 188 (235)
T ss_pred CCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 0 0 0123346788999999999999999999999999999995443 33334
Q ss_pred CcEEEEeecCCChhhhhcCCccccccccccEEEe-CChHH
Q 026207 129 GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL-GDEEA 167 (241)
Q Consensus 129 g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~-~~~~~ 167 (241)
|.++|.++|..+ .+... ||+++. .++..
T Consensus 189 ~~tii~~tHd~~--------~~~~~---ad~v~vl~~G~i 217 (235)
T COG1122 189 GKTIIIVTHDLE--------LVLEY---ADRVVVLDDGKI 217 (235)
T ss_pred CCeEEEEeCcHH--------HHHhh---CCEEEEEECCEE
Confidence 689999999997 55556 888887 44443
|
|
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=99.72 E-value=2e-17 Score=142.07 Aligned_cols=157 Identities=31% Similarity=0.478 Sum_probs=113.5
Q ss_pred ccceeeEEEEEeEEeeCcce------e---eccEEEEEeCCCchHHHHHHHHHHhccccCC------CeEEEEcCCcccC
Q 026207 4 LRNVFLLIVKFFYALYSINK------I---IFDFFLSYFRPGVGKTTVMREIARVLSDEFQ------KRVVIVDTSNEIG 68 (241)
Q Consensus 4 ~~~~~~~~~r~~~~~~~~~~------~---~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g------~~v~~i~~~~e~~ 68 (241)
+++.+++.+|..+..++..+ . ....++|.||||||||||++.+++.+++..| .++..+++..|+.
T Consensus 80 IR~~s~~~~r~~~~~~~~~~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~ 159 (270)
T TIGR02858 80 IKNVSSLNIRIAREKLGAADKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIA 159 (270)
T ss_pred EEcccccEEEeccccCCcHHHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHH
Confidence 55666666776554443221 0 1137899999999999999999999988743 3444444344443
Q ss_pred CC-CCCccccccchhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHHHHHhCCcEEEEeecCCChhhhhcC
Q 026207 69 GD-GDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKN 147 (241)
Q Consensus 69 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~~~~~~g~~vi~t~H~~~~~~~~~~ 147 (241)
.. ...++...+ .+..+.+...+...++..+..++|+++++|||+...+...+..+.++|+++++|+|..++.++..+
T Consensus 160 ~~~~~~~q~~~~--~r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~~G~~vI~ttH~~~~~~~~~r 237 (270)
T TIGR02858 160 GCVNGVPQHDVG--IRTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEALHAGVSIIATAHGRDVEDLYKR 237 (270)
T ss_pred HHhccccccccc--ccccccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEechhHHHHHHhC
Confidence 22 334444443 355666666677778888888999999999999988777776766789999999999998888899
Q ss_pred Ccccccccc--ccEEEe
Q 026207 148 PILSDLIGG--VDTVTL 162 (241)
Q Consensus 148 p~l~~l~~~--~d~V~~ 162 (241)
|.+..++.. +|++++
T Consensus 238 ~~~~~l~~~~~~~r~i~ 254 (270)
T TIGR02858 238 PVFKELIENEAFERYVV 254 (270)
T ss_pred hHHHHHHhcCceEEEEE
Confidence 988777652 788877
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=99.72 E-value=3e-17 Score=143.74 Aligned_cols=149 Identities=19% Similarity=0.193 Sum_probs=95.2
Q ss_pred CccccceeeEEEEEeEEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCC-----------------eEEE
Q 026207 1 MLRLRNVFLLIVKFFYALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK-----------------RVVI 60 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-----------------~v~~ 60 (241)
|++++|+..-.- -..++... .+..| +++|+||||||||||++.|++.+++..|. ++.|
T Consensus 4 ~i~~~~l~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~ 81 (303)
T TIGR01288 4 AIDLVGVSKSYG--DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGV 81 (303)
T ss_pred EEEEEeEEEEeC--CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEE
Confidence 567777752110 11234433 23333 89999999999999999999998776432 2334
Q ss_pred EcCCcccCCCCCCcccc------cc--------c--------------hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcC
Q 026207 61 VDTSNEIGGDGDIPHSA------IG--------T--------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDE 112 (241)
Q Consensus 61 i~~~~e~~~~~~~~~~~------~~--------~--------------~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE 112 (241)
+.+...+.....+.... .+ . ......+|+|++++..+++++.++|+++++||
T Consensus 82 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDE 161 (303)
T TIGR01288 82 VPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDE 161 (303)
T ss_pred EeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 33221111100000000 00 0 01123356688999999999999999999999
Q ss_pred CCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 113 IGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 113 ~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
|++++|+.... .....|.++|+++|... .+..+ ||++++
T Consensus 162 Pt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~--------~~~~~---~d~i~~ 207 (303)
T TIGR01288 162 PTTGLDPHARHLIWERLRSLLARGKTILLTTHFME--------EAERL---CDRLCV 207 (303)
T ss_pred CCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH--------HHHHh---CCEEEE
Confidence 99999995432 33446899999999986 56666 788776
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.5e-17 Score=139.47 Aligned_cols=118 Identities=19% Similarity=0.236 Sum_probs=97.2
Q ss_pred eeeccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHh
Q 026207 23 KIIFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVEN 102 (241)
Q Consensus 23 ~~~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 102 (241)
..+.|+||++||+||||||++.++...+.......+++++|+.|+.... ......|-++......+..++.++++
T Consensus 122 ~~~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~s-----kkslI~QREvG~dT~sF~~aLraALR 196 (353)
T COG2805 122 ESPRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHES-----KKSLINQREVGRDTLSFANALRAALR 196 (353)
T ss_pred hCCCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcc-----hHhhhhHHHhcccHHHHHHHHHHHhh
Confidence 4667899999999999999999999999988778999999999874321 11111122333446688899999999
Q ss_pred cCCcEEEEcCCCCHHhHHHHHHHHhCCcEEEEeecCCChhhhh
Q 026207 103 HMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENII 145 (241)
Q Consensus 103 ~~p~vlilDE~~~~~d~~~~~~~~~~g~~vi~t~H~~~~~~~~ 145 (241)
++||+|++.|.++.+....+..|+++||.|++|.|-+++...+
T Consensus 197 eDPDVIlvGEmRD~ETi~~ALtAAETGHLV~~TLHT~sA~~ti 239 (353)
T COG2805 197 EDPDVILVGEMRDLETIRLALTAAETGHLVFGTLHTNSAAKTI 239 (353)
T ss_pred cCCCEEEEeccccHHHHHHHHHHHhcCCEEEEecccccHHHHH
Confidence 9999999999999999999999999999999999999855544
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.5e-17 Score=132.38 Aligned_cols=142 Identities=16% Similarity=0.162 Sum_probs=95.3
Q ss_pred CccccceeeEEEEEeEEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCC--------
Q 026207 1 MLRLRNVFLLIVKFFYALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGG-------- 69 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~-------- 69 (241)
||+++|+.. ++ ++... .+..| .++|+||||||||||++.+++..++..|. ++++ +..+..
T Consensus 4 ~l~~~~l~~---~~---~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~--i~~~-g~~~~~~~~~~~~~ 74 (182)
T cd03215 4 VLEVRGLSV---KG---AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGE--ITLD-GKPVTRRSPRDAIR 74 (182)
T ss_pred EEEEeccEE---Ee---eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCce--EEEC-CEECCccCHHHHHh
Confidence 577788753 22 44433 23333 89999999999999999999999887554 4444 211110
Q ss_pred -C-CCCcccc-----c---cchhhcC---CCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCC
Q 026207 70 -D-GDIPHSA-----I---GTARRMQ---VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERG 129 (241)
Q Consensus 70 -~-~~~~~~~-----~---~~~~~~~---~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g 129 (241)
. ...++.. . .....+. .+|.+++++..+++++..+|+++++|||++++|+.... ...+.|
T Consensus 75 ~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~ 154 (182)
T cd03215 75 AGIAYVPEDRKREGLVLDLSVAENIALSSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAG 154 (182)
T ss_pred CCeEEecCCcccCcccCCCcHHHHHHHHhhcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCC
Confidence 0 1111110 0 0000111 17788999999999999999999999999999995432 334458
Q ss_pred cEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 130 VMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 130 ~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
.++|+++|..+ .+..+ ||+++.
T Consensus 155 ~tiii~sh~~~--------~~~~~---~d~v~~ 176 (182)
T cd03215 155 KAVLLISSELD--------ELLGL---CDRILV 176 (182)
T ss_pred CEEEEEeCCHH--------HHHHh---CCEEEE
Confidence 89999999876 55666 788765
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.5e-17 Score=135.70 Aligned_cols=151 Identities=17% Similarity=0.164 Sum_probs=94.7
Q ss_pred CccccceeeEEEEEeEEeeCcce--eec-cEEEEEeCCCchHHHHHHHHHHhccccCCC---------------------
Q 026207 1 MLRLRNVFLLIVKFFYALYSINK--IIF-DFFLSYFRPGVGKTTVMREIARVLSDEFQK--------------------- 56 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~~--~~~-g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~--------------------- 56 (241)
||+++|+..-.-...+.++...+ +.. .++.|+||||||||||++.+++.+++..|.
T Consensus 1 ~l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred CeEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 78888886221000012444332 333 389999999999999999999998876442
Q ss_pred eEEEEcCCcccCCCCCCccc-cc-----c--------c----h----------hhcCCCCCcccHHHHHHHHHhcCCcEE
Q 026207 57 RVVIVDTSNEIGGDGDIPHS-AI-----G--------T----A----------RRMQVPEPSLQHKVMIEAVENHMPEVI 108 (241)
Q Consensus 57 ~v~~i~~~~e~~~~~~~~~~-~~-----~--------~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~vl 108 (241)
.+.|+.+...+.....+... .. + . . .....+|++++++..+++++..+|+++
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 160 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLL 160 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 12222211111100000000 00 0 0 0 012235667899999999999999999
Q ss_pred EEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 109 IVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 109 ilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++|||++++|+.... +.++.|.++|+++|..+ .+..+ ||+++.
T Consensus 161 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~--------~~~~~---~d~i~~ 210 (216)
T TIGR00960 161 LADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN--------LVETY---RHRTLT 210 (216)
T ss_pred EEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH--------HHHHh---CCEEEE
Confidence 999999999995432 33445889999999886 55556 788776
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.1e-17 Score=133.95 Aligned_cols=148 Identities=19% Similarity=0.195 Sum_probs=94.7
Q ss_pred CccccceeeEEEEEe--EEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc-------------
Q 026207 1 MLRLRNVFLLIVKFF--YALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD------------- 62 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~--~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~------------- 62 (241)
|++++|+.+..-... ..++... .+..| ++.|.||+||||||||+.+.+...|+.|. +++.
T Consensus 1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~--v~i~g~d~~~l~~~~~~ 78 (226)
T COG1136 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGE--VLINGKDLTKLSEKELA 78 (226)
T ss_pred CcEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCce--EEECCEEcCcCCHHHHH
Confidence 677888864221111 1223222 23333 89999999999999999999999987543 3332
Q ss_pred -----------CCcccCCCCCCccc------------------------cccch-----hhcCCCCCcccHHHHHHHHHh
Q 026207 63 -----------TSNEIGGDGDIPHS------------------------AIGTA-----RRMQVPEPSLQHKVMIEAVEN 102 (241)
Q Consensus 63 -----------~~~e~~~~~~~~~~------------------------~~~~~-----~~~~~~~~~~~~~~~~~~~l~ 102 (241)
+...+.....+... .++.. .....+|+|++||+++++|+.
T Consensus 79 ~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~ 158 (226)
T COG1136 79 KLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALI 158 (226)
T ss_pred HHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHh
Confidence 11111100000000 00000 012346778899999999999
Q ss_pred cCCcEEEEcCCCCHHhHHHHH-------H-HHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 103 HMPEVIIVDEIGTEAEAHACR-------S-IAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 103 ~~p~vlilDE~~~~~d~~~~~-------~-~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
.+|++|+.|||++.+|.+... . ..+.|.++|+++|... +... ||+++.
T Consensus 159 ~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~---------lA~~---~dr~i~ 214 (226)
T COG1136 159 NNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPE---------LAKY---ADRVIE 214 (226)
T ss_pred cCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHH---------HHHh---CCEEEE
Confidence 999999999999999995432 2 3455899999999885 4445 888876
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.8e-17 Score=135.82 Aligned_cols=139 Identities=18% Similarity=0.214 Sum_probs=91.2
Q ss_pred CccccceeeEEEEEeEEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC-------
Q 026207 1 MLRLRNVFLLIVKFFYALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD------- 70 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~------- 70 (241)
||+++|+.+...-- ...+..+ .+..| ++.|+||+|||||||+++++++..+..|. +.+. +.++...
T Consensus 3 ~i~~~nl~k~yp~~-~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~--i~~~-g~~i~~~~~k~lr~ 78 (258)
T COG3638 3 MIEVKNLSKTYPGG-HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGE--ILFN-GVQITKLKGKELRK 78 (258)
T ss_pred eEEEeeeeeecCCC-ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcce--EEec-ccchhccchHHHHH
Confidence 67888886322111 1111111 23333 89999999999999999999999887553 3333 2111100
Q ss_pred -----CC-------Cccc-------------------cccch----------------------hhcCCCCCcccHHHHH
Q 026207 71 -----GD-------IPHS-------------------AIGTA----------------------RRMQVPEPSLQHKVMI 97 (241)
Q Consensus 71 -----~~-------~~~~-------------------~~~~~----------------------~~~~~~~~~~~~~~~~ 97 (241)
+. ++.. .++.+ .+...+|++.+||+.+
T Consensus 79 ~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaI 158 (258)
T COG3638 79 LRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAI 158 (258)
T ss_pred HHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHH
Confidence 00 0000 00000 1344578889999999
Q ss_pred HHHHhcCCcEEEEcCCCCHHhHHHHH--------HHHhCCcEEEEeecCCChhh
Q 026207 98 EAVENHMPEVIIVDEIGTEAEAHACR--------SIAERGVMLIGTAHGEWLEN 143 (241)
Q Consensus 98 ~~~l~~~p~vlilDE~~~~~d~~~~~--------~~~~~g~~vi~t~H~~~~~~ 143 (241)
++++.++|++|+-|||.+.+|+.... .+.+.|.|++++.|..+..-
T Consensus 159 ARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~ 212 (258)
T COG3638 159 ARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAK 212 (258)
T ss_pred HHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHH
Confidence 99999999999999999999995443 34567999999999998433
|
|
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.2e-16 Score=130.14 Aligned_cols=115 Identities=17% Similarity=0.236 Sum_probs=87.6
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCC
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMP 105 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p 105 (241)
+|+++|+||+||||||+++++++.+.+..+.++++++++.|...... .....+..+......+...++.+++++|
T Consensus 1 ~GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~-----~~~i~q~~vg~~~~~~~~~i~~aLr~~p 75 (198)
T cd01131 1 RGLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESK-----RSLINQREVGLDTLSFENALKAALRQDP 75 (198)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCc-----cceeeecccCCCccCHHHHHHHHhcCCc
Confidence 48999999999999999999999987554568888987777532211 0111122222234567788999999999
Q ss_pred cEEEEcCCCCHHhHHHHHHHHhCCcEEEEeecCCChhhhh
Q 026207 106 EVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENII 145 (241)
Q Consensus 106 ~vlilDE~~~~~d~~~~~~~~~~g~~vi~t~H~~~~~~~~ 145 (241)
+++++||+++......+.++..+|+.+++|+|+.+..+.+
T Consensus 76 d~ii~gEird~e~~~~~l~~a~~G~~v~~t~Ha~~~~~~~ 115 (198)
T cd01131 76 DVILVGEMRDLETIRLALTAAETGHLVMSTLHTNSAAKTI 115 (198)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHcCCEEEEEecCCcHHHHH
Confidence 9999999998887777778888999999999999855443
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.8e-17 Score=130.29 Aligned_cols=110 Identities=18% Similarity=0.237 Sum_probs=77.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCC--------C-CCCccccc--cchhhcCCCCCcccHHHH
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGG--------D-GDIPHSAI--GTARRMQVPEPSLQHKVM 96 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~--------~-~~~~~~~~--~~~~~~~~~~~~~~~~~~ 96 (241)
+++|.||||||||||++.|++..++..|. ++++ +.++.. . ...++... .....-..+|++++++..
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~~~~~G~--i~~~-g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~~qrv~ 106 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILGLLRPTSGR--VRLD-GADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQRQRLG 106 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCCCCe--EEEC-CEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHHHHHHH
Confidence 89999999999999999999999887554 4444 322210 0 01111100 000011126789999999
Q ss_pred HHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCC
Q 026207 97 IEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 97 ~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~ 140 (241)
+++++..+|+++++|||++++|+.... ...+.|.++++++|...
T Consensus 107 la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~ 157 (173)
T cd03246 107 LARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE 157 (173)
T ss_pred HHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 999999999999999999999995432 33445889999999875
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.4e-16 Score=139.37 Aligned_cols=123 Identities=19% Similarity=0.196 Sum_probs=85.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC-----------------eEEEEcCCcccCCCCCCccc------ccc-----
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK-----------------RVVIVDTSNEIGGDGDIPHS------AIG----- 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-----------------~v~~i~~~~e~~~~~~~~~~------~~~----- 79 (241)
+++|.||||||||||++.+++.++++.|. ++.|+.+...+.....+... ..+
T Consensus 30 i~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~ 109 (301)
T TIGR03522 30 IVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQL 109 (301)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHH
Confidence 89999999999999999999998877542 13333322111110000000 000
Q ss_pred ---ch--------------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEe
Q 026207 80 ---TA--------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGT 135 (241)
Q Consensus 80 ---~~--------------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t 135 (241)
.+ .....+|.|++++..+++++.++|+++++|||++++|+.... .. ..+.+++.+
T Consensus 110 ~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~-~~~~tiii~ 188 (301)
T TIGR03522 110 LKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNI-GKDKTIILS 188 (301)
T ss_pred HHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHh-cCCCEEEEE
Confidence 00 112335678899999999999999999999999999995433 33 347899999
Q ss_pred ecCCChhhhhcCCccccccccccEEEe
Q 026207 136 AHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 136 ~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+|..+ .++++ ||+|++
T Consensus 189 sH~l~--------~~~~~---~d~i~~ 204 (301)
T TIGR03522 189 THIMQ--------EVEAI---CDRVII 204 (301)
T ss_pred cCCHH--------HHHHh---CCEEEE
Confidence 99997 67777 888877
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.3e-17 Score=137.96 Aligned_cols=155 Identities=20% Similarity=0.186 Sum_probs=109.4
Q ss_pred eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCC-------C-C-----------CCccc-c----
Q 026207 23 KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGG-------D-G-----------DIPHS-A---- 77 (241)
Q Consensus 23 ~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~-------~-~-----------~~~~~-~---- 77 (241)
+++.| ++++.||||+||||+++.+.|.+.|..|. +.+. +..... . + ..|.. .
T Consensus 46 ~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~--v~V~-G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~ 122 (325)
T COG4586 46 EIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGK--VRVN-GKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVL 122 (325)
T ss_pred ecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCe--EEec-CcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHH
Confidence 34555 79999999999999999999999988554 2222 111000 0 0 00000 0
Q ss_pred --------------ccc-----------hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH--------H
Q 026207 78 --------------IGT-----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR--------S 124 (241)
Q Consensus 78 --------------~~~-----------~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~--------~ 124 (241)
.+. ..++..+|.|.+.+.-+++++.|+|++++||||+-++|..+.. .
T Consensus 123 ~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~ 202 (325)
T COG4586 123 KLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEY 202 (325)
T ss_pred HHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHH
Confidence 000 0123345667799999999999999999999999999984322 2
Q ss_pred HHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe-CChHHHHHHHHHhhhccCCCCCceEEEEEE
Q 026207 125 IAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL-GDEEARARRCQKSILERKAPPTFYFLIEMR 192 (241)
Q Consensus 125 ~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~-~~~~~~~~~~~~~~k~r~g~~~~~~~fe~~ 192 (241)
....++||+.|+|..+ .++.+ ||+|++ ..++..+++.+.+++.+||+-.. ..+++.
T Consensus 203 n~~~~aTVllTTH~~~--------di~~l---c~rv~~I~~Gqlv~dg~l~~l~~~f~~~k~-~~~el~ 259 (325)
T COG4586 203 NEERQATVLLTTHIFD--------DIATL---CDRVLLIDQGQLVFDGTLAQLQEQFGPYKE-FSVELK 259 (325)
T ss_pred HHhhCceEEEEecchh--------hHHHh---hhheEEeeCCcEeecccHHHHHHHhCCceE-EEEEEc
Confidence 3456899999999998 78888 999998 77777778999999999987642 334554
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.5e-17 Score=130.24 Aligned_cols=111 Identities=16% Similarity=0.050 Sum_probs=84.0
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPE 106 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~ 106 (241)
.++.|.||||||||||++.+++.++++.|. +.++ +..+ +...+...+|.+++++..+++++..+|+
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~--i~~~-g~~i-----------~~~~q~~~LSgGq~qrv~laral~~~p~ 91 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLIPNGDN--DEWD-GITP-----------VYKPQYIDLSGGELQRVAIAAALLRNAT 91 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCCCCcE--EEEC-CEEE-----------EEEcccCCCCHHHHHHHHHHHHHhcCCC
Confidence 389999999999999999999999887554 4444 2221 1111111278899999999999999999
Q ss_pred EEEEcCCCCHHhHHHHH-------HHHhC-CcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 107 VIIVDEIGTEAEAHACR-------SIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 107 vlilDE~~~~~d~~~~~-------~~~~~-g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++++|||++++|+.... +.... +.++++++|... .+..+ ||+++.
T Consensus 92 lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~--------~~~~~---~d~i~~ 144 (177)
T cd03222 92 FYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLA--------VLDYL---SDRIHV 144 (177)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHH--------HHHHh---CCEEEE
Confidence 99999999999985432 33344 489999999886 55556 777766
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP) | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.8e-16 Score=134.99 Aligned_cols=114 Identities=24% Similarity=0.265 Sum_probs=93.7
Q ss_pred eeccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCC-CcccHHHHHHHHHh
Q 026207 24 IIFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPE-PSLQHKVMIEAVEN 102 (241)
Q Consensus 24 ~~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~ 102 (241)
...|+++|+||+||||||++++++..+.+. +.++++++++.|+...+. .+..+.. .+..+...+..+++
T Consensus 78 ~~~GlilisG~tGSGKTT~l~all~~i~~~-~~~iitiEdp~E~~~~~~---------~q~~v~~~~~~~~~~~l~~~lR 147 (264)
T cd01129 78 KPHGIILVTGPTGSGKTTTLYSALSELNTP-EKNIITVEDPVEYQIPGI---------NQVQVNEKAGLTFARGLRAILR 147 (264)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHhhhCCC-CCeEEEECCCceecCCCc---------eEEEeCCcCCcCHHHHHHHHhc
Confidence 345799999999999999999998888643 578999998988753321 1223222 25688999999999
Q ss_pred cCCcEEEEcCCCCHHhHHHHHHHHhCCcEEEEeecCCChhhhhcC
Q 026207 103 HMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKN 147 (241)
Q Consensus 103 ~~p~vlilDE~~~~~d~~~~~~~~~~g~~vi~t~H~~~~~~~~~~ 147 (241)
++||+++++|+++...+..+.+++++|+.+++|+|+++..+++.+
T Consensus 148 ~~PD~i~vgEiR~~e~a~~~~~aa~tGh~v~tTlHa~~~~~ai~R 192 (264)
T cd01129 148 QDPDIIMVGEIRDAETAEIAVQAALTGHLVLSTLHTNDAPGAITR 192 (264)
T ss_pred cCCCEEEeccCCCHHHHHHHHHHHHcCCcEEEEeccCCHHHHHHH
Confidence 999999999999999888888999999999999999998887754
|
It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB. |
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.7e-16 Score=129.34 Aligned_cols=148 Identities=20% Similarity=0.239 Sum_probs=96.9
Q ss_pred CccccceeeEEEEEeEEeeCcce---eeccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCC------cccCCC-
Q 026207 1 MLRLRNVFLLIVKFFYALYSINK---IIFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTS------NEIGGD- 70 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~~---~~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~------~e~~~~- 70 (241)
|++.+|++ +..--+.+++.++ .+..+..|+||||+|||||++.++|.+.++.|. +.+.... .++...
T Consensus 1 mi~a~nls--~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~-v~~~g~~l~~~~~~~lA~~r 77 (259)
T COG4559 1 MIRAENLS--YSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGE-VTLNGVPLNSWPPEELARHR 77 (259)
T ss_pred CeeeeeeE--EEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCe-EeeCCcChhhCCHHHHHHHh
Confidence 88899986 2333344555544 233489999999999999999999999988443 2221100 000000
Q ss_pred ---------------------CCCcccc--------------------ccc-hhhcCCCCCcccHHHHHHHHHhc-----
Q 026207 71 ---------------------GDIPHSA--------------------IGT-ARRMQVPEPSLQHKVMIEAVENH----- 103 (241)
Q Consensus 71 ---------------------~~~~~~~--------------------~~~-~~~~~~~~~~~~~~~~~~~~l~~----- 103 (241)
+..|+.. .+. .+.+..+|++.+|++.+++.+.+
T Consensus 78 aVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v 157 (259)
T COG4559 78 AVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPV 157 (259)
T ss_pred hhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCC
Confidence 0011100 000 02345578888999999998865
Q ss_pred -CCcEEEEcCCCCHHhHH-------HHHHHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 104 -MPEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 104 -~p~vlilDE~~~~~d~~-------~~~~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++.++++|||++.+|.. .+++....|..|+.+.|..++...+ ||+|++
T Consensus 158 ~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~Y-----------aDrivl 213 (259)
T COG4559 158 PSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQY-----------ADRIVL 213 (259)
T ss_pred CCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHh-----------hheeee
Confidence 33599999999999983 3345556788899999999955544 888887
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=99.68 E-value=2e-16 Score=131.87 Aligned_cols=148 Identities=22% Similarity=0.185 Sum_probs=94.4
Q ss_pred CccccceeeEEEEEeE-----EeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCC----------------
Q 026207 1 MLRLRNVFLLIVKFFY-----ALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK---------------- 56 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~-----~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~---------------- 56 (241)
|++++|+.. ++-. .++... .+..| +++|.||||||||||++.|++.+++..|.
T Consensus 1 ~l~~~~v~~---~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 77 (218)
T cd03266 1 MITADALTK---RFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEAR 77 (218)
T ss_pred CeEEEEEEE---ecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHH
Confidence 788888852 2211 244443 23333 89999999999999999999998876443
Q ss_pred -eEEEEcCCcccCCCCCCccc------ccc--------c----hh----------hcCCCCCcccHHHHHHHHHhcCCcE
Q 026207 57 -RVVIVDTSNEIGGDGDIPHS------AIG--------T----AR----------RMQVPEPSLQHKVMIEAVENHMPEV 107 (241)
Q Consensus 57 -~v~~i~~~~e~~~~~~~~~~------~~~--------~----~~----------~~~~~~~~~~~~~~~~~~l~~~p~v 107 (241)
.+.|+.+...+.....+... ..+ . .. ....+|++++++..+++++..+|++
T Consensus 78 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~i 157 (218)
T cd03266 78 RRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPV 157 (218)
T ss_pred hhEEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCE
Confidence 12222221111110000000 000 0 00 1223566789999999999999999
Q ss_pred EEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 108 IIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 108 lilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+++|||++++|+.... ...+.|.++|+++|... .+..+ +|+++.
T Consensus 158 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~--------~~~~~---~d~i~~ 208 (218)
T cd03266 158 LLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ--------EVERL---CDRVVV 208 (218)
T ss_pred EEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH--------HHHHh---cCEEEE
Confidence 9999999999995432 33446889999999886 45555 787766
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.1e-17 Score=141.73 Aligned_cols=128 Identities=23% Similarity=0.258 Sum_probs=86.9
Q ss_pred eecc-EEEEEeCCCchHHHHHHHHHHhccccCCC-----------------eEEEEcCCcccCCCCCCccc------ccc
Q 026207 24 IIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK-----------------RVVIVDTSNEIGGDGDIPHS------AIG 79 (241)
Q Consensus 24 ~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-----------------~v~~i~~~~e~~~~~~~~~~------~~~ 79 (241)
+..| +++|+||||||||||+++|++.++++.|. ++.|+.+...+.....+... ..+
T Consensus 16 i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~ 95 (302)
T TIGR01188 16 VREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYG 95 (302)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHHHHHHHHcC
Confidence 3344 89999999999999999999999877443 12233211111100000000 000
Q ss_pred --------c----h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCc
Q 026207 80 --------T----A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGV 130 (241)
Q Consensus 80 --------~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~ 130 (241)
. . .....+|+|++++..+++++.++|+++++|||++++|+.... ...+.|.
T Consensus 96 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~ 175 (302)
T TIGR01188 96 LPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGV 175 (302)
T ss_pred CCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCC
Confidence 0 0 112336678899999999999999999999999999995432 3345689
Q ss_pred EEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 131 MLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 131 ~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++|+++|..+ .++.+ ||+|++
T Consensus 176 tvi~~sH~~~--------~~~~~---~d~v~~ 196 (302)
T TIGR01188 176 TILLTTHYME--------EADKL---CDRIAI 196 (302)
T ss_pred EEEEECCCHH--------HHHHh---CCEEEE
Confidence 9999999986 66667 888877
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.6e-16 Score=132.04 Aligned_cols=150 Identities=19% Similarity=0.187 Sum_probs=94.5
Q ss_pred CccccceeeEEEEEeEEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCC---------------------
Q 026207 1 MLRLRNVFLLIVKFFYALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK--------------------- 56 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~--------------------- 56 (241)
||+++|+..-.- .-..++... .+..| +++|+||||||||||++.+++.+++..|.
T Consensus 1 ~l~~~~l~~~~~-~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 1 MIEFHNVSKAYP-GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred CEEEEeeeEEeC-CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 788888853210 002234433 23333 89999999999999999999998776443
Q ss_pred eEEEEcCCcccCCCCCCccc-cc-----c--------c----h----------hhcCCCCCcccHHHHHHHHHhcCCcEE
Q 026207 57 RVVIVDTSNEIGGDGDIPHS-AI-----G--------T----A----------RRMQVPEPSLQHKVMIEAVENHMPEVI 108 (241)
Q Consensus 57 ~v~~i~~~~e~~~~~~~~~~-~~-----~--------~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~vl 108 (241)
.+.|+.+...+.....+... .. + . . .....+|++++++..+++++..+|+++
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ll 159 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLL 159 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEE
Confidence 12222211111100000000 00 0 0 0 011235667899999999999999999
Q ss_pred EEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 109 IVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 109 ilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++|||++++|+.... ...+.|.+++.++|... .+..+ ||++++
T Consensus 160 lLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~--------~~~~~---~d~i~~ 209 (214)
T TIGR02673 160 LADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS--------LVDRV---AHRVII 209 (214)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--------HHHHh---cCEEEE
Confidence 999999999995432 33446889999999886 55666 788765
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.9e-16 Score=125.88 Aligned_cols=121 Identities=21% Similarity=0.287 Sum_probs=83.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCC-------C-CCCcccc--cc--chhhcCCCCCcccHHH
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGG-------D-GDIPHSA--IG--TARRMQVPEPSLQHKV 95 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~-------~-~~~~~~~--~~--~~~~~~~~~~~~~~~~ 95 (241)
+++|.||||||||||++.+++..++..|. +.++ +.++.. . ...++.. .. .....-.+|++++++.
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~~~~~G~--i~~~-g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~~qrv 104 (173)
T cd03230 28 IYGLLGPNGAGKTTLIKIILGLLKPDSGE--IKVL-GKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGMKQRL 104 (173)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCeE--EEEC-CEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHHHHHHH
Confidence 89999999999999999999998877553 3444 222110 0 1111110 00 0000001677899999
Q ss_pred HHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 96 MIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 96 ~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
.+++++..+|+++++|||++++|+.... ...+.|.++++++|... .+.++ +|+++.
T Consensus 105 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~--------~~~~~---~d~i~~ 167 (173)
T cd03230 105 ALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE--------EAERL---CDRVAI 167 (173)
T ss_pred HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH--------HHHHh---CCEEEE
Confidence 9999999999999999999999995432 33445789999999876 45555 777765
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-16 Score=140.43 Aligned_cols=121 Identities=20% Similarity=0.260 Sum_probs=84.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCC--------------CCCCccc----cccch--------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGG--------------DGDIPHS----AIGTA-------- 81 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~--------------~~~~~~~----~~~~~-------- 81 (241)
++.|.||+||||||||++|||+..++.|. ++++ +..... ....||. ++.+.
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe~~~~G~--I~i~-g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k 107 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLEEPTSGE--ILID-GRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPK 107 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCce--EEEC-CEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCCCch
Confidence 89999999999999999999999988654 4444 221111 0111221 00000
Q ss_pred ---------------------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------H-HHhCCcEE
Q 026207 82 ---------------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------S-IAERGVML 132 (241)
Q Consensus 82 ---------------------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~-~~~~g~~v 132 (241)
+....+|++++|++++++++..+|+++++|||.+.+|+.... . -.+.|.|+
T Consensus 108 ~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~ 187 (338)
T COG3839 108 AEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTT 187 (338)
T ss_pred HHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcE
Confidence 122346778999999999999999999999999999995332 2 23458899
Q ss_pred EEeecCCChhhhhcCCccccccccccEEEe
Q 026207 133 IGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 133 i~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
|.++|.-. +..-| +|+|.+
T Consensus 188 IYVTHDq~--------EAmtl---adri~V 206 (338)
T COG3839 188 IYVTHDQV--------EAMTL---ADRIVV 206 (338)
T ss_pred EEEcCCHH--------HHHhh---CCEEEE
Confidence 99999885 34445 677666
|
|
| >PRK10436 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.5e-16 Score=143.52 Aligned_cols=114 Identities=22% Similarity=0.259 Sum_probs=96.3
Q ss_pred eeccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCC-cccHHHHHHHHHh
Q 026207 24 IIFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEP-SLQHKVMIEAVEN 102 (241)
Q Consensus 24 ~~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~ 102 (241)
.+.|+++++||+||||||++.+++..+... +.++++++++.|+...+. .|.++... +..+...+..+++
T Consensus 216 ~~~GliLvtGpTGSGKTTtL~a~l~~~~~~-~~~i~TiEDPvE~~l~gi---------~Q~~v~~~~g~~f~~~lr~~LR 285 (462)
T PRK10436 216 QPQGLILVTGPTGSGKTVTLYSALQTLNTA-QINICSVEDPVEIPLAGI---------NQTQIHPKAGLTFQRVLRALLR 285 (462)
T ss_pred hcCCeEEEECCCCCChHHHHHHHHHhhCCC-CCEEEEecCCccccCCCc---------ceEeeCCccCcCHHHHHHHHhc
Confidence 567899999999999999999988887644 578999999999854321 23344433 6789999999999
Q ss_pred cCCcEEEEcCCCCHHhHHHHHHHHhCCcEEEEeecCCChhhhhcC
Q 026207 103 HMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKN 147 (241)
Q Consensus 103 ~~p~vlilDE~~~~~d~~~~~~~~~~g~~vi~t~H~~~~~~~~~~ 147 (241)
++||+|+++|+++.+.+..+.+++.+||.+++|+|++++.+++.+
T Consensus 286 ~dPDvI~vGEIRD~eta~~al~AA~TGHlVlsTlHa~~a~~ai~R 330 (462)
T PRK10436 286 QDPDVIMVGEIRDGETAEIAIKAAQTGHLVLSTLHTNSTSETLVR 330 (462)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHcCCcEEEeeccCChHHHHHH
Confidence 999999999999999998888999999999999999998887754
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-16 Score=144.59 Aligned_cols=149 Identities=16% Similarity=0.207 Sum_probs=94.3
Q ss_pred CccccceeeEEEEEeEEeeCcce--eecc-EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEE
Q 026207 1 MLRLRNVFLLIVKFFYALYSINK--IIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVV 59 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~~--~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~ 59 (241)
||+++|+..-.- -+.++...+ +..| ++.|+||||||||||++.|++.+++..|. ++.
T Consensus 3 ~L~~~nls~~y~--~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig 80 (402)
T PRK09536 3 MIDVSDLSVEFG--DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVA 80 (402)
T ss_pred eEEEeeEEEEEC--CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceE
Confidence 577777752110 112333322 2223 89999999999999999999999876442 233
Q ss_pred EEcCCcccCCC---------CCCccc-ccc--------ch--------------hhcCCCCCcccHHHHHHHHHhcCCcE
Q 026207 60 IVDTSNEIGGD---------GDIPHS-AIG--------TA--------------RRMQVPEPSLQHKVMIEAVENHMPEV 107 (241)
Q Consensus 60 ~i~~~~e~~~~---------~~~~~~-~~~--------~~--------------~~~~~~~~~~~~~~~~~~~l~~~p~v 107 (241)
++.+...+... ...++. ... .. +....+|+|++|+..+++++.++|++
T Consensus 81 ~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~i 160 (402)
T PRK09536 81 SVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPV 160 (402)
T ss_pred EEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 33322111100 000000 000 00 11233567889999999999999999
Q ss_pred EEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 108 IIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 108 lilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+++|||++++|+.... ...+.|.++|+++|..+ .+.++ ||++++
T Consensus 161 LLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~--------~~~~~---adrii~ 211 (402)
T PRK09536 161 LLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD--------LAARY---CDELVL 211 (402)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH--------HHHHh---CCEEEE
Confidence 9999999999994322 33346889999999987 55566 788776
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-16 Score=142.21 Aligned_cols=151 Identities=17% Similarity=0.199 Sum_probs=94.9
Q ss_pred CccccceeeEEE--EEeEEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCC-------------------
Q 026207 1 MLRLRNVFLLIV--KFFYALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------- 56 (241)
Q Consensus 1 ~~~~~~~~~~~~--r~~~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------- 56 (241)
||+++|+..-.- ..-..++... .+..| +++|+||||||||||++.+++.+++..|.
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 80 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA 80 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 788888863211 0001233332 23333 89999999999999999999999877442
Q ss_pred --eEEEEcCCcccCCCCCCccc------ccc--------c----h----------hhcCCCCCcccHHHHHHHHHhcCCc
Q 026207 57 --RVVIVDTSNEIGGDGDIPHS------AIG--------T----A----------RRMQVPEPSLQHKVMIEAVENHMPE 106 (241)
Q Consensus 57 --~v~~i~~~~e~~~~~~~~~~------~~~--------~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~ 106 (241)
++.|+.+...+.....+... ..+ . . .....+|+|++++..+++++.++|+
T Consensus 81 ~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ 160 (343)
T PRK11153 81 RRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPK 160 (343)
T ss_pred hcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 12333221111100000000 000 0 0 0122356688999999999999999
Q ss_pred EEEEcCCCCHHhHHHHH-------HHH-hCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 107 VIIVDEIGTEAEAHACR-------SIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 107 vlilDE~~~~~d~~~~~-------~~~-~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++++|||++++|+.... ... +.|.++|+++|..+ .+..+ ||+|++
T Consensus 161 iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~--------~i~~~---~d~v~~ 213 (343)
T PRK11153 161 VLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD--------VVKRI---CDRVAV 213 (343)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--------HHHHh---CCEEEE
Confidence 99999999999995432 332 34899999999986 55566 777766
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.1e-16 Score=125.74 Aligned_cols=121 Identities=18% Similarity=0.283 Sum_probs=84.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCC----------C-CCCcccc-c----cchhhcCC-CCCc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGG----------D-GDIPHSA-I----GTARRMQV-PEPS 90 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~----------~-~~~~~~~-~----~~~~~~~~-~~~~ 90 (241)
++.|.||||||||||++.+++.+++..|. ++++ +.++.. . ...++.. . .....+.. +|.+
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~--i~~~-g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~lS~G 104 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGLEEPDSGS--ILID-GEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGLSGG 104 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceE--EEEC-CEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeecCCHH
Confidence 89999999999999999999999877554 4443 221110 0 0111110 0 00011122 7789
Q ss_pred ccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhC-CcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 91 LQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 91 ~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~-g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++++..+++++..+|+++++|||++++|+.... ...+. |.++++++|... .+.++ ||++++
T Consensus 105 ~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~--------~~~~~---~d~i~~ 173 (178)
T cd03229 105 QQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD--------EAARL---ADRVVV 173 (178)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--------HHHHh---cCEEEE
Confidence 999999999999999999999999999995432 33344 789999999876 45556 787765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.8e-16 Score=137.80 Aligned_cols=118 Identities=17% Similarity=0.215 Sum_probs=91.1
Q ss_pred eeccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhc
Q 026207 24 IIFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENH 103 (241)
Q Consensus 24 ~~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 103 (241)
...|+++|+||+||||||+++++++.+.+..+.++++++++.|....... ....+.++......+...++.++++
T Consensus 120 ~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~-----~~i~q~evg~~~~~~~~~l~~~lr~ 194 (343)
T TIGR01420 120 RPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKR-----SLINQREVGLDTLSFANALRAALRE 194 (343)
T ss_pred hcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCcc-----ceEEccccCCCCcCHHHHHHHhhcc
Confidence 34679999999999999999999998875445789999988776422110 0001122222345788889999999
Q ss_pred CCcEEEEcCCCCHHhHHHHHHHHhCCcEEEEeecCCChhhhhc
Q 026207 104 MPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIK 146 (241)
Q Consensus 104 ~p~vlilDE~~~~~d~~~~~~~~~~g~~vi~t~H~~~~~~~~~ 146 (241)
+||+|++||+++......+..+.++|+.+++|+|+++..+.+.
T Consensus 195 ~pd~i~vgEird~~~~~~~l~aa~tGh~v~~T~Ha~~~~~~~~ 237 (343)
T TIGR01420 195 DPDVILIGEMRDLETVELALTAAETGHLVFGTLHTNSAAQTIE 237 (343)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCCcEEEEEcCCCHHHHHH
Confidence 9999999999988877777788899999999999999776654
|
This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.5e-16 Score=141.87 Aligned_cols=123 Identities=20% Similarity=0.195 Sum_probs=83.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC----------------eEEEEcCCcccCCCCCCcccccc------------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK----------------RVVIVDTSNEIGGDGDIPHSAIG------------ 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------~v~~i~~~~e~~~~~~~~~~~~~------------ 79 (241)
++.|.||||||||||+++|+|..+++.|. ++.++.+...+.....+. .++.
T Consensus 34 ~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~-eNi~~~l~~~~~~~~~ 112 (351)
T PRK11432 34 MVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLG-ENVGYGLKMLGVPKEE 112 (351)
T ss_pred EEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHH-HHHHHHHhHcCCCHHH
Confidence 89999999999999999999999887543 222332211111100000 0000
Q ss_pred ---c--------------hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HH-HhCCcEEEE
Q 026207 80 ---T--------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SI-AERGVMLIG 134 (241)
Q Consensus 80 ---~--------------~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~-~~~g~~vi~ 134 (241)
. -+....+|++++|++++++++..+|+++++|||.+.+|+.... .. .+.|.++|.
T Consensus 113 ~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~ 192 (351)
T PRK11432 113 RKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLY 192 (351)
T ss_pred HHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 0 0112335668899999999999999999999999999995432 22 234899999
Q ss_pred eecCCChhhhhcCCccccccccccEEEe
Q 026207 135 TAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 135 t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++|..+ .+..+ +|+|++
T Consensus 193 vTHd~~--------e~~~l---aD~i~v 209 (351)
T PRK11432 193 VTHDQS--------EAFAV---SDTVIV 209 (351)
T ss_pred EcCCHH--------HHHHh---CCEEEE
Confidence 999986 45555 777776
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=4e-16 Score=133.43 Aligned_cols=149 Identities=15% Similarity=0.120 Sum_probs=94.8
Q ss_pred CccccceeeEEEEEeEEeeCcce--eecc-EEEEEeCCCchHHHHHHHHHHhccccCCC-------------eEEEEcCC
Q 026207 1 MLRLRNVFLLIVKFFYALYSINK--IIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK-------------RVVIVDTS 64 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~~--~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-------------~v~~i~~~ 64 (241)
||+++|+..-.- -+.++...+ +..| +++|+||||||||||++.|++.+++..|. ++.|+.+.
T Consensus 1 ml~~~~l~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~ 78 (255)
T PRK11248 1 MLQISHLYADYG--GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQN 78 (255)
T ss_pred CEEEEEEEEEeC--CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCC
Confidence 788888863210 012344332 3333 89999999999999999999998876443 12233222
Q ss_pred cccCCCCCCccc-c-----cc--------c----h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCH
Q 026207 65 NEIGGDGDIPHS-A-----IG--------T----A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTE 116 (241)
Q Consensus 65 ~e~~~~~~~~~~-~-----~~--------~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~ 116 (241)
..+.....+... . .+ . . .....+|+|++++..+++++..+|+++++|||+++
T Consensus 79 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~ 158 (255)
T PRK11248 79 EGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGA 158 (255)
T ss_pred CccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 111110000000 0 00 0 0 01223566789999999999999999999999999
Q ss_pred HhHHHHH-------HH-HhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 117 AEAHACR-------SI-AERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 117 ~d~~~~~-------~~-~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+|+.... .. ...|.++|+++|..+ .+..+ ||+|+.
T Consensus 159 LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~--------~~~~~---~d~i~~ 201 (255)
T PRK11248 159 LDAFTREQMQTLLLKLWQETGKQVLLITHDIE--------EAVFM---ATELVL 201 (255)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--------HHHHh---CCEEEE
Confidence 9995432 32 335889999999886 55666 788776
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.8e-16 Score=137.79 Aligned_cols=137 Identities=19% Similarity=0.228 Sum_probs=92.4
Q ss_pred EEEeEEeeCcce--------eecc-EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCC-------------
Q 026207 12 VKFFYALYSINK--------IIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGG------------- 69 (241)
Q Consensus 12 ~r~~~~~~~~~~--------~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~------------- 69 (241)
++.+++.|+... +..| ++.|.||+||||||+|++|||...|+.|. ++++ +..+..
T Consensus 8 i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~--I~l~-G~~i~~lpp~kR~ig~VFQ 84 (352)
T COG3842 8 IRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGE--ILLD-GEDITDVPPEKRPIGMVFQ 84 (352)
T ss_pred EEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCce--EEEC-CEECCCCChhhcccceeec
Confidence 344455565433 3343 78999999999999999999999998654 4443 222211
Q ss_pred -CCCCcccccc----c------------------------------hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCC
Q 026207 70 -DGDIPHSAIG----T------------------------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIG 114 (241)
Q Consensus 70 -~~~~~~~~~~----~------------------------------~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~ 114 (241)
....||.... + .++...+|++++|++++++++..+|+++++|||.
T Consensus 85 ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPl 164 (352)
T COG3842 85 SYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPL 164 (352)
T ss_pred CcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcc
Confidence 0011221000 0 0122335778899999999999999999999999
Q ss_pred CHHhHHHHH--------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 115 TEAEAHACR--------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 115 ~~~d~~~~~--------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+.+|..... ...+.|+|.|.++|.-. +...| +|+|.+
T Consensus 165 SaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe--------EAl~m---sDrI~V 209 (352)
T COG3842 165 SALDAKLREQMRKELKELQRELGITFVYVTHDQE--------EALAM---SDRIAV 209 (352)
T ss_pred cchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH--------HHhhh---ccceEE
Confidence 999994322 23456999999999885 44445 777776
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.6e-16 Score=136.97 Aligned_cols=149 Identities=16% Similarity=0.143 Sum_probs=94.3
Q ss_pred CccccceeeEEEEEeEEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCC--------------------e
Q 026207 1 MLRLRNVFLLIVKFFYALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK--------------------R 57 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~--------------------~ 57 (241)
||+++|+..-.- -+.++... .+..| +++|.||||||||||++.|++.+++..|. .
T Consensus 1 ml~~~~l~~~~~--~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 1 MLATSDLWFRYQ--DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred CeEEEEEEEEcC--CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 888888863211 01234433 23344 89999999999999999999999877442 1
Q ss_pred EEEEcCCccc-CCCCCCcc------cccc------------ch----------hhcCCCCCcccHHHHHHHHHhcCCcEE
Q 026207 58 VVIVDTSNEI-GGDGDIPH------SAIG------------TA----------RRMQVPEPSLQHKVMIEAVENHMPEVI 108 (241)
Q Consensus 58 v~~i~~~~e~-~~~~~~~~------~~~~------------~~----------~~~~~~~~~~~~~~~~~~~l~~~p~vl 108 (241)
+.|+.+.... .....+.. ...+ .. .....+|+|++++..+++++..+|+++
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~ll 158 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYL 158 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEE
Confidence 2222211100 00000000 0000 00 012235667899999999999999999
Q ss_pred EEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 109 IVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 109 ilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++|||++++|+.... ...+.|.++|+++|..+ .+..+ ||+++.
T Consensus 159 lLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~--------~~~~~---~d~i~~ 208 (271)
T PRK13638 159 LLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID--------LIYEI---SDAVYV 208 (271)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH--------HHHHh---CCEEEE
Confidence 999999999995432 33445889999999886 45555 787776
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.4e-16 Score=132.47 Aligned_cols=151 Identities=20% Similarity=0.242 Sum_probs=100.5
Q ss_pred EEEeEEeeCcceeecc---------EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccc------
Q 026207 12 VKFFYALYSINKIIFD---------FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHS------ 76 (241)
Q Consensus 12 ~r~~~~~~~~~~~~~g---------~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~------ 76 (241)
++.+...|+.....++ ++.|+||||+||||+++.+.+.++|+.|. +++. +.++.... +++
T Consensus 7 v~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~--v~~~-G~~it~l~--p~~iar~Gi 81 (250)
T COG0411 7 VRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGT--VIFR-GRDITGLP--PHRIARLGI 81 (250)
T ss_pred eccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCce--EEEC-CcccCCCC--HHHHHhccc
Confidence 4444566777665555 79999999999999999999999999554 3333 32222110 000
Q ss_pred -------------------cccc--------------h---------------hhc----------CCCCCcccHHHHHH
Q 026207 77 -------------------AIGT--------------A---------------RRM----------QVPEPSLQHKVMIE 98 (241)
Q Consensus 77 -------------------~~~~--------------~---------------~~~----------~~~~~~~~~~~~~~ 98 (241)
..+. + .++ ..++.+.+.+.-++
T Consensus 82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIA 161 (250)
T COG0411 82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIA 161 (250)
T ss_pred eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHH
Confidence 0000 0 001 11233446677899
Q ss_pred HHHhcCCcEEEEcCCCCHHhHHHH-------HHHHh-CCcEEEEeecCCChhhhhcCCccccccccccEEEe-CChHHHH
Q 026207 99 AVENHMPEVIIVDEIGTEAEAHAC-------RSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL-GDEEARA 169 (241)
Q Consensus 99 ~~l~~~p~vlilDE~~~~~d~~~~-------~~~~~-~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~-~~~~~~~ 169 (241)
+++..+|++|+||||.+++.+... +...+ .|.+++..-|.++ .+..+ ||+|+. ..++..+
T Consensus 162 rALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~--------~Vm~l---~dri~Vl~~G~~IA 230 (250)
T COG0411 162 RALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMK--------LVMGL---ADRIVVLNYGEVIA 230 (250)
T ss_pred HHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccH--------HHhhh---ccEEEeccCCcCcc
Confidence 999999999999999999877433 24444 5799999999998 77788 999998 4444444
Q ss_pred HHHHHhhhc
Q 026207 170 RRCQKSILE 178 (241)
Q Consensus 170 ~~~~~~~k~ 178 (241)
++.+.++.+
T Consensus 231 eG~P~eV~~ 239 (250)
T COG0411 231 EGTPEEVRN 239 (250)
T ss_pred cCCHHHHhc
Confidence 466666654
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.4e-16 Score=123.32 Aligned_cols=157 Identities=17% Similarity=0.182 Sum_probs=101.3
Q ss_pred CccccceeeEEEEEeEEeeCcce------eecc-EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC---
Q 026207 1 MLRLRNVFLLIVKFFYALYSINK------IIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD--- 70 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~~------~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~--- 70 (241)
|++|.+|. ..|+... ++.| ++.|.||+|+|||||++.++|...|..|. +.+. +.+....
T Consensus 1 ~l~L~~V~--------~~y~~~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~--i~i~-g~d~t~~~P~ 69 (231)
T COG3840 1 MLALDDVR--------FSYGHLPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGE--ILIN-GVDHTASPPA 69 (231)
T ss_pred CccccceE--------EeeCcceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCce--EEEc-CeecCcCCcc
Confidence 77888884 2344433 2223 89999999999999999999999988554 3333 1111100
Q ss_pred -----------CCCcc----cccc----------------------------chhh-cCCCCCcccHHHHHHHHHhcCCc
Q 026207 71 -----------GDIPH----SAIG----------------------------TARR-MQVPEPSLQHKVMIEAVENHMPE 106 (241)
Q Consensus 71 -----------~~~~~----~~~~----------------------------~~~~-~~~~~~~~~~~~~~~~~l~~~p~ 106 (241)
....| ++++ ...| -..+|++.+|++++++++..+-.
T Consensus 70 ~RPVSmlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~P 149 (231)
T COG3840 70 ERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQP 149 (231)
T ss_pred cCChhhhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCC
Confidence 00000 0000 0011 23467788999999999988888
Q ss_pred EEEEcCCCCHHhHHHHH--------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe-CChHHHHHHHHHhhh
Q 026207 107 VIIVDEIGTEAEAHACR--------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL-GDEEARARRCQKSIL 177 (241)
Q Consensus 107 vlilDE~~~~~d~~~~~--------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~-~~~~~~~~~~~~~~k 177 (241)
++++|||++.+|+.... .+.+++.|+++++|..+ .+.++ +|++++ .++...+.+....+.
T Consensus 150 ilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~--------Da~~i---a~~~~fl~~Gri~~~g~~~~~~ 218 (231)
T COG3840 150 ILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPE--------DAARI---ADRVVFLDNGRIAAQGSTQELL 218 (231)
T ss_pred eEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH--------HHHHh---hhceEEEeCCEEEeeccHHHHh
Confidence 99999999999994322 35567899999999886 56666 788777 444443334444444
Q ss_pred cc
Q 026207 178 ER 179 (241)
Q Consensus 178 ~r 179 (241)
++
T Consensus 219 ~~ 220 (231)
T COG3840 219 SG 220 (231)
T ss_pred cc
Confidence 43
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.4e-16 Score=127.01 Aligned_cols=121 Identities=17% Similarity=0.292 Sum_probs=85.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC---------CCCcc--ccccc----hhhcCCCCCccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD---------GDIPH--SAIGT----ARRMQVPEPSLQ 92 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~---------~~~~~--~~~~~----~~~~~~~~~~~~ 92 (241)
+++|.||||||||||++.+++..+++.|. ++++ +..+... ...++ ...+. ......+|.+++
T Consensus 27 ~~~l~G~nGsGKStLl~~i~G~~~~~~G~--v~~~-g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~~ 103 (180)
T cd03214 27 IVGILGPNGAGKSTLLKTLAGLLKPSSGE--ILLD-GKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGER 103 (180)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcE--EEEC-CEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHHH
Confidence 89999999999999999999999888554 4555 3322110 00000 00000 012344677899
Q ss_pred HHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhC-CcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 93 HKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 93 ~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~-g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++..+++++..+|+++++|||++++|+.... ..++. |.++|.++|..+ .+.++ +|+++.
T Consensus 104 qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~--------~~~~~---~d~~~~ 170 (180)
T cd03214 104 QRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN--------LAARY---ADRVIL 170 (180)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--------HHHHh---CCEEEE
Confidence 9999999999999999999999999985432 33333 789999999986 55566 787776
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.8e-16 Score=141.51 Aligned_cols=148 Identities=18% Similarity=0.151 Sum_probs=93.4
Q ss_pred CccccceeeEEEEEeEEeeCcc--eee-ccEEEEEeCCCchHHHHHHHHHHhccccCCC----------------eEEEE
Q 026207 1 MLRLRNVFLLIVKFFYALYSIN--KII-FDFFLSYFRPGVGKTTVMREIARVLSDEFQK----------------RVVIV 61 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~--~~~-~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------~v~~i 61 (241)
||+++|+..-.-. ..++... .+. ..++.|.||||||||||+++|+|..+++.|. ++.|+
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v 81 (353)
T TIGR03265 4 YLSIDNIRKRFGA--FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIV 81 (353)
T ss_pred EEEEEEEEEEeCC--eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 5677777532110 1123322 232 3389999999999999999999999887443 12233
Q ss_pred cCCcccCCCCCCcccccc---------------c----h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcC
Q 026207 62 DTSNEIGGDGDIPHSAIG---------------T----A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDE 112 (241)
Q Consensus 62 ~~~~e~~~~~~~~~~~~~---------------~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE 112 (241)
.+...+.....+. .++. . . +....+|++++|++++++++..+|+++++||
T Consensus 82 ~Q~~~lfp~~tv~-eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDE 160 (353)
T TIGR03265 82 FQSYALFPNLTVA-DNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDE 160 (353)
T ss_pred eCCcccCCCCcHH-HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 2221111100000 0000 0 0 1122356678999999999999999999999
Q ss_pred CCCHHhHHHHH-------HH-HhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 113 IGTEAEAHACR-------SI-AERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 113 ~~~~~d~~~~~-------~~-~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
|.+.+|+.... .. .+.|.++|.++|..+ .+..+ +|+|++
T Consensus 161 P~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~--------ea~~l---~d~i~v 207 (353)
T TIGR03265 161 PLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE--------EALSM---ADRIVV 207 (353)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH--------HHHHh---CCEEEE
Confidence 99999984332 22 234899999999986 55566 787776
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.7e-16 Score=137.68 Aligned_cols=120 Identities=18% Similarity=0.121 Sum_probs=92.9
Q ss_pred eccEEEEEeCCCchHHHHHHHHHHhcccc-CCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhc
Q 026207 25 IFDFFLSYFRPGVGKTTVMREIARVLSDE-FQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENH 103 (241)
Q Consensus 25 ~~g~vll~Gp~GsGKTTLl~~l~~~l~~~-~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 103 (241)
..|+++++||+||||||++++++..+... +..++++++++.|+..... .. .....+.++......+...+..++++
T Consensus 148 ~~GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~--~~-~~~~~q~evg~~~~~~~~~l~~aLR~ 224 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSP--DD-LLPPAQSQIGRDVDSFANGIRLALRR 224 (372)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCC--ce-eecccccccCCCccCHHHHHHHhhcc
Confidence 45689999999999999999999988532 2368999999988754321 00 11011223322334678899999999
Q ss_pred CCcEEEEcCCCCHHhHHHHHHHHhCCcEEEEeecCCChhhhhcC
Q 026207 104 MPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKN 147 (241)
Q Consensus 104 ~p~vlilDE~~~~~d~~~~~~~~~~g~~vi~t~H~~~~~~~~~~ 147 (241)
+||+|+++|+++..+...+..+.++||.+++|+|++++.+++.|
T Consensus 225 ~PD~I~vGEiRd~et~~~al~aa~TGH~v~tTlHa~s~~~ai~R 268 (372)
T TIGR02525 225 APKIIGVGEIRDLETFQAAVLAGQSGHFCLGTLHVKSPGEAISR 268 (372)
T ss_pred CCCEEeeCCCCCHHHHHHHHHHHhcCCcEEEeeCCCCHHHHHHH
Confidence 99999999999998888888899999999999999998887754
|
Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524). |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.6e-16 Score=140.60 Aligned_cols=149 Identities=15% Similarity=0.108 Sum_probs=93.6
Q ss_pred CccccceeeEEEEEeEEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCC----------------eEEEE
Q 026207 1 MLRLRNVFLLIVKFFYALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK----------------RVVIV 61 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------~v~~i 61 (241)
||+++|+..-... -..++... .+..| ++.|.||||||||||+++|+|..+++.|. ++.|+
T Consensus 3 ~l~i~~l~~~~~~-~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v 81 (356)
T PRK11650 3 GLKLQAVRKSYDG-KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMV 81 (356)
T ss_pred EEEEEeEEEEeCC-CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 4677777532100 01233332 23333 89999999999999999999999887443 12333
Q ss_pred cCCcccCCCCCCcccccc---------------c----h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcC
Q 026207 62 DTSNEIGGDGDIPHSAIG---------------T----A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDE 112 (241)
Q Consensus 62 ~~~~e~~~~~~~~~~~~~---------------~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE 112 (241)
.+...+.....+. .++. . . +....+|+|++|++++++++..+|+++++||
T Consensus 82 ~Q~~~lfp~~tv~-eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDE 160 (356)
T PRK11650 82 FQNYALYPHMSVR-ENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDE 160 (356)
T ss_pred eCCccccCCCCHH-HHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 2221111100000 0000 0 0 0123356788999999999999999999999
Q ss_pred CCCHHhHHHHH-------HHH-hCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 113 IGTEAEAHACR-------SIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 113 ~~~~~d~~~~~-------~~~-~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
|++.+|+.... ... +.|.++|.++|... .+..+ +|+|++
T Consensus 161 P~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~--------ea~~l---~D~i~v 207 (356)
T PRK11650 161 PLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV--------EAMTL---ADRVVV 207 (356)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--------HHHHh---CCEEEE
Confidence 99999984332 333 34899999999886 45556 777776
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.3e-16 Score=120.49 Aligned_cols=108 Identities=18% Similarity=0.206 Sum_probs=81.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCcE
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEV 107 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~v 107 (241)
+++|.||||+|||||++.+++..++..|. ++++ +. ..+++..+ +|.+++++..+++++..+|++
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~~~~~G~--i~~~-~~----------~~i~~~~~---lS~G~~~rv~laral~~~p~i 91 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGELEPDEGI--VTWG-ST----------VKIGYFEQ---LSGGEKMRLALAKLLLENPNL 91 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCCceE--EEEC-Ce----------EEEEEEcc---CCHHHHHHHHHHHHHhcCCCE
Confidence 89999999999999999999999887554 5555 21 01111111 778999999999999999999
Q ss_pred EEEcCCCCHHhHHHHH----HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 108 IIVDEIGTEAEAHACR----SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 108 lilDE~~~~~d~~~~~----~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+++|||.+++|+.... .....+.++++++|..+ .+..+ +|+++.
T Consensus 92 lllDEP~~~LD~~~~~~l~~~l~~~~~til~~th~~~--------~~~~~---~d~v~~ 139 (144)
T cd03221 92 LLLDEPTNHLDLESIEALEEALKEYPGTVILVSHDRY--------FLDQV---ATKIIE 139 (144)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEECCHH--------HHHHh---CCEEEE
Confidence 9999999999985443 22233678999999876 44455 677664
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-15 Score=122.56 Aligned_cols=110 Identities=15% Similarity=0.190 Sum_probs=78.1
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC-------eEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHH
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK-------RVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAV 100 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-------~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (241)
+++|.||||||||||++.+++.+++..|. ++.|+.+...+. ... ....+.. .....+|++++++..++++
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~-~~t-v~~nl~~-~~~~~LS~G~~~rv~lara 105 (166)
T cd03223 29 RLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLP-LGT-LREQLIY-PWDDVLSGGEQQRLAFARL 105 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccc-ccc-HHHHhhc-cCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999999887553 334444222111 000 0011100 0235578899999999999
Q ss_pred HhcCCcEEEEcCCCCHHhHHHHH----HHHhCCcEEEEeecCCC
Q 026207 101 ENHMPEVIIVDEIGTEAEAHACR----SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 101 l~~~p~vlilDE~~~~~d~~~~~----~~~~~g~~vi~t~H~~~ 140 (241)
+..+|+++++|||++++|+.... ...+.+.++|+++|...
T Consensus 106 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~tiiivsh~~~ 149 (166)
T cd03223 106 LLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVISVGHRPS 149 (166)
T ss_pred HHcCCCEEEEECCccccCHHHHHHHHHHHHHhCCEEEEEeCChh
Confidence 99999999999999999995543 12233688999999975
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >TIGR02533 type_II_gspE general secretory pathway protein E | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.2e-16 Score=143.02 Aligned_cols=114 Identities=20% Similarity=0.246 Sum_probs=95.0
Q ss_pred eeccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCC-cccHHHHHHHHHh
Q 026207 24 IIFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEP-SLQHKVMIEAVEN 102 (241)
Q Consensus 24 ~~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~ 102 (241)
...|+++++||+||||||++++++..+.+. +.++++++++.|+...+. .+.++... +..+...+..+++
T Consensus 240 ~~~GlilitGptGSGKTTtL~a~L~~l~~~-~~~iiTiEDpvE~~~~~~---------~q~~v~~~~g~~f~~~lr~~LR 309 (486)
T TIGR02533 240 RPHGIILVTGPTGSGKTTTLYAALSRLNTP-ERNILTVEDPVEYQIEGI---------GQIQVNPKIGLTFAAGLRAILR 309 (486)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHhccCCC-CCcEEEEcCCeeeecCCC---------ceEEEccccCccHHHHHHHHHh
Confidence 356799999999999999999988888644 578999999988754321 12333332 6789999999999
Q ss_pred cCCcEEEEcCCCCHHhHHHHHHHHhCCcEEEEeecCCChhhhhcC
Q 026207 103 HMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKN 147 (241)
Q Consensus 103 ~~p~vlilDE~~~~~d~~~~~~~~~~g~~vi~t~H~~~~~~~~~~ 147 (241)
++||+|+++|+++.+.+..+.+++.+||.+++|+|++++.+++.+
T Consensus 310 ~dPDvI~vGEiRd~eta~~a~~aa~tGHlvlsTlHa~sa~~ai~R 354 (486)
T TIGR02533 310 QDPDIIMVGEIRDLETAQIAIQASLTGHLVLSTLHTNDAAGAVTR 354 (486)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHH
Confidence 999999999999999888888999999999999999998887764
|
This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.4e-16 Score=136.91 Aligned_cols=151 Identities=13% Similarity=0.161 Sum_probs=95.8
Q ss_pred CccccceeeEEEE--EeEEeeCcce--eecc-EEEEEeCCCchHHHHHHHHHHhccccCCC-------------------
Q 026207 1 MLRLRNVFLLIVK--FFYALYSINK--IIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------- 56 (241)
Q Consensus 1 ~~~~~~~~~~~~r--~~~~~~~~~~--~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------- 56 (241)
||+++|+..-.-. ....++..++ +..| ++.|+||||||||||+++|++..+++.|.
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~ 80 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 8889999632210 0012344433 3333 89999999999999999999999887443
Q ss_pred --eEEEEcCCcccCCCCCC------cccccc--c----------hh----------hcCCCCCcccHHHHHHHHHhcCCc
Q 026207 57 --RVVIVDTSNEIGGDGDI------PHSAIG--T----------AR----------RMQVPEPSLQHKVMIEAVENHMPE 106 (241)
Q Consensus 57 --~v~~i~~~~e~~~~~~~------~~~~~~--~----------~~----------~~~~~~~~~~~~~~~~~~l~~~p~ 106 (241)
++.++.+...+.....+ +....+ . .. ....+|+|++|++.+++++..+|+
T Consensus 81 r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~ 160 (343)
T TIGR02314 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPK 160 (343)
T ss_pred hcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCC
Confidence 12222211111100000 000000 0 00 112356678999999999999999
Q ss_pred EEEEcCCCCHHhHHHHH-------HHHh-CCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 107 VIIVDEIGTEAEAHACR-------SIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 107 vlilDE~~~~~d~~~~~-------~~~~-~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++++|||++.+|+.... ...+ .|.++++++|..+ .+..+ ||+|++
T Consensus 161 iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~--------~v~~~---~d~v~v 213 (343)
T TIGR02314 161 VLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD--------VVKRI---CDCVAV 213 (343)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--------HHHHh---CCEEEE
Confidence 99999999999995432 3333 4899999999987 56666 788776
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.9e-16 Score=134.24 Aligned_cols=147 Identities=21% Similarity=0.234 Sum_probs=94.4
Q ss_pred CccccceeeEEEEEeEEeeCc--ceeecc-EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCC-----cccCCC--
Q 026207 1 MLRLRNVFLLIVKFFYALYSI--NKIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTS-----NEIGGD-- 70 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~--~~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~-----~e~~~~-- 70 (241)
|+++.|+.+..-++.. +.. .++..| ++.+.||+||||||||+.|||+..|+.|. +.+... ......
T Consensus 2 ~i~i~~~~~~~~~~~a--~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~--I~~~~~~l~D~~~~~~~~R 77 (345)
T COG1118 2 SIRINNVKKRFGAFGA--LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGR--IRLNGRVLFDVSNLAVRDR 77 (345)
T ss_pred ceeehhhhhhcccccc--cccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCce--EEECCEeccchhccchhhc
Confidence 5667777543322221 111 233333 89999999999999999999999988554 333211 010000
Q ss_pred --CCC-------ccc----cc--cc----------------------------h-hhcCCCCCcccHHHHHHHHHhcCCc
Q 026207 71 --GDI-------PHS----AI--GT----------------------------A-RRMQVPEPSLQHKVMIEAVENHMPE 106 (241)
Q Consensus 71 --~~~-------~~~----~~--~~----------------------------~-~~~~~~~~~~~~~~~~~~~l~~~p~ 106 (241)
+++ +|. ++ |. + +...-+|++++|++++++++...|+
T Consensus 78 ~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~ 157 (345)
T COG1118 78 KVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPK 157 (345)
T ss_pred ceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCC
Confidence 000 000 00 00 0 0112356778999999999999999
Q ss_pred EEEEcCCCCHHhHHHHH-------HHH-hCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 107 VIIVDEIGTEAEAHACR-------SIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 107 vlilDE~~~~~d~~~~~-------~~~-~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+++||||.+.+|+.... +.. +.|++.++++|... +...+ +|+|+.
T Consensus 158 vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e--------ea~~l---adrvvv 210 (345)
T COG1118 158 VLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE--------EALEL---ADRVVV 210 (345)
T ss_pred eEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH--------HHHhh---cceEEE
Confidence 99999999999995432 332 34999999999886 55666 888887
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.4e-16 Score=128.88 Aligned_cols=121 Identities=17% Similarity=0.253 Sum_probs=88.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC-------------------CCCccccccc--------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD-------------------GDIPHSAIGT-------- 80 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~-------------------~~~~~~~~~~-------- 80 (241)
.+.|.|++|||||||++.+++..++..|. ++++ +.+.... ...|.+..+.
T Consensus 35 ~lgivGeSGsGKSTL~r~l~Gl~~p~~G~--I~~~-G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~ 111 (252)
T COG1124 35 TLGIVGESGSGKSTLARLLAGLEKPSSGS--ILLD-GKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRP 111 (252)
T ss_pred EEEEEcCCCCCHHHHHHHHhcccCCCCce--EEEC-CcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhcc
Confidence 79999999999999999999999988554 4444 2211110 0011110000
Q ss_pred ------------------------hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH--------HHHhC
Q 026207 81 ------------------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR--------SIAER 128 (241)
Q Consensus 81 ------------------------~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~--------~~~~~ 128 (241)
.++-..+|+|..||.++++|+..+|++||+|||++.+|..... ..++.
T Consensus 112 ~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~ 191 (252)
T COG1124 112 HGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKER 191 (252)
T ss_pred CCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhc
Confidence 0122336778899999999999999999999999999994322 23456
Q ss_pred CcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 129 GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 129 g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
|.++++.+|... .++++ ||+|.+
T Consensus 192 ~lt~l~IsHdl~--------~v~~~---cdRi~V 214 (252)
T COG1124 192 GLTYLFISHDLA--------LVEHM---CDRIAV 214 (252)
T ss_pred CceEEEEeCcHH--------HHHHH---hhheee
Confidence 889999999998 78899 999887
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.6e-16 Score=128.14 Aligned_cols=124 Identities=19% Similarity=0.187 Sum_probs=83.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC---------------eEEEEcCCcc--cCCCC------C----Ccc--ccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK---------------RVVIVDTSNE--IGGDG------D----IPH--SAI 78 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~---------------~v~~i~~~~e--~~~~~------~----~~~--~~~ 78 (241)
+++|.||||||||||++.+++..+++.|. ++.|+.+... +.... . ... ...
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~ 107 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQA 107 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHHhhhhhhcCccHHHH
Confidence 89999999999999999999998877442 2333332210 10000 0 000 000
Q ss_pred cc-h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCC
Q 026207 79 GT-A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 79 ~~-~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~ 140 (241)
.. . .....+|++++++..+++++..+|+++++|||++++|+.... ...+.|.++|+++|...
T Consensus 108 ~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~ 187 (205)
T cd03226 108 ETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYE 187 (205)
T ss_pred HHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 00 0 012235678899999999999999999999999999995432 33456889999999886
Q ss_pred hhhhhcCCccccccccccEEEe
Q 026207 141 LENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 141 ~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
.+..+ ||+++.
T Consensus 188 --------~~~~~---~d~i~~ 198 (205)
T cd03226 188 --------FLAKV---CDRVLL 198 (205)
T ss_pred --------HHHHh---CCEEEE
Confidence 45556 788765
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.5e-16 Score=124.89 Aligned_cols=144 Identities=22% Similarity=0.203 Sum_probs=92.5
Q ss_pred CccccceeeEEEEEeEEeeCc--ceeecc-EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc---------------
Q 026207 1 MLRLRNVFLLIVKFFYALYSI--NKIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD--------------- 62 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~--~~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~--------------- 62 (241)
|++++||.+-...- ...+.. ..+..| ++.++||+|||||||++.|.+...++.|. +.+.
T Consensus 1 mI~f~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~--i~~~~~dl~~l~~~~iP~L 77 (223)
T COG2884 1 MIRFENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGK--ILVNGHDLSRLKGREIPFL 77 (223)
T ss_pred CeeehhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCce--EEECCeecccccccccchh
Confidence 89999997422222 111111 123344 79999999999999999999999888443 2222
Q ss_pred --------CCcccCCCC------CCccccccc---------------------hhh-cCCCCCcccHHHHHHHHHhcCCc
Q 026207 63 --------TSNEIGGDG------DIPHSAIGT---------------------ARR-MQVPEPSLQHKVMIEAVENHMPE 106 (241)
Q Consensus 63 --------~~~e~~~~~------~~~~~~~~~---------------------~~~-~~~~~~~~~~~~~~~~~l~~~p~ 106 (241)
+...+..+. ..+....|. +.. -..+|++.+|++.++++..++|+
T Consensus 78 RR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~ 157 (223)
T COG2884 78 RRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPA 157 (223)
T ss_pred hheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCC
Confidence 111110000 000000110 001 12356788999999999999999
Q ss_pred EEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcC
Q 026207 107 VIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKN 147 (241)
Q Consensus 107 vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~ 147 (241)
+++-|||+..+|+.... +....|.||++.+|...+-+.+..
T Consensus 158 vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~ 205 (223)
T COG2884 158 VLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRH 205 (223)
T ss_pred eEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccC
Confidence 99999999999995443 455679999999999875554433
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=3e-16 Score=140.94 Aligned_cols=148 Identities=20% Similarity=0.144 Sum_probs=92.9
Q ss_pred ccccceeeEEEEEeEEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCC----------------eEEEEc
Q 026207 2 LRLRNVFLLIVKFFYALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK----------------RVVIVD 62 (241)
Q Consensus 2 ~~~~~~~~~~~r~~~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------~v~~i~ 62 (241)
|+++|+..-.- -..++... .+..| ++.|+||||||||||++.|++..+++.|. ++.|+.
T Consensus 4 l~i~~l~~~~~--~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~ 81 (369)
T PRK11000 4 VTLRNVTKAYG--DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVF 81 (369)
T ss_pred EEEEEEEEEeC--CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEe
Confidence 66777752110 11233333 23333 89999999999999999999999877442 133333
Q ss_pred CCcccCCCCCCcc-------------cc-----------ccc----hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCC
Q 026207 63 TSNEIGGDGDIPH-------------SA-----------IGT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIG 114 (241)
Q Consensus 63 ~~~e~~~~~~~~~-------------~~-----------~~~----~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~ 114 (241)
+...+.....+.. .. ++. .+....+|++++|+..+++++..+|+++++|||+
T Consensus 82 Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPt 161 (369)
T PRK11000 82 QSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPL 161 (369)
T ss_pred CCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 2211111000000 00 000 0112335678899999999999999999999999
Q ss_pred CHHhHHHHH-------HHH-hCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 115 TEAEAHACR-------SIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 115 ~~~d~~~~~-------~~~-~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+++|+.... ... +.|.++|.++|..+ .+..+ ||+|++
T Consensus 162 s~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~--------~~~~~---~d~i~v 206 (369)
T PRK11000 162 SNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV--------EAMTL---ADKIVV 206 (369)
T ss_pred ccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH--------HHHHh---CCEEEE
Confidence 999995432 333 34899999999886 45555 777766
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.1e-16 Score=134.30 Aligned_cols=148 Identities=20% Similarity=0.224 Sum_probs=99.3
Q ss_pred CccccceeeEEEEE---eEEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC----
Q 026207 1 MLRLRNVFLLIVKF---FYALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD---- 70 (241)
Q Consensus 1 ~~~~~~~~~~~~r~---~~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~---- 70 (241)
|++|++|.+..-.- ....+..+ .+..| ++.|+|.+|+|||||+|++.++-.|+.|. +.++ +.++...
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~--v~v~-G~di~~l~~~~ 77 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGS--VFVD-GQDLTALSEAE 77 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCce--EEEc-CEecccCChHH
Confidence 88999996321110 00112222 23344 89999999999999999999999888665 4454 3222110
Q ss_pred --------CCCccc------------------cccc---------------------h-hhcCCCCCcccHHHHHHHHHh
Q 026207 71 --------GDIPHS------------------AIGT---------------------A-RRMQVPEPSLQHKVMIEAVEN 102 (241)
Q Consensus 71 --------~~~~~~------------------~~~~---------------------~-~~~~~~~~~~~~~~~~~~~l~ 102 (241)
+.+.++ ..+. + .+...+|+|++|++.+++|+.
T Consensus 78 Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa 157 (339)
T COG1135 78 LRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALA 157 (339)
T ss_pred HHHHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHh
Confidence 000000 0000 0 012235778899999999999
Q ss_pred cCCcEEEEcCCCCHHhHHHHH-------H-HHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 103 HMPEVIIVDEIGTEAEAHACR-------S-IAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 103 ~~p~vlilDE~~~~~d~~~~~-------~-~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
.+|++++.||+++.+||+... . ..+.|.|++..+|.++ +++.+ ||+|.+
T Consensus 158 ~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~--------Vvk~i---c~rVav 214 (339)
T COG1135 158 NNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEME--------VVKRI---CDRVAV 214 (339)
T ss_pred cCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHH--------HHHHH---hhhheE
Confidence 999999999999999996443 2 2346999999999998 77888 888887
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.2e-16 Score=137.33 Aligned_cols=151 Identities=19% Similarity=0.166 Sum_probs=95.3
Q ss_pred CccccceeeEEEEEe---EEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCC------------------
Q 026207 1 MLRLRNVFLLIVKFF---YALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------ 56 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~---~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------ 56 (241)
|++++|+..-.-... ..++..+ .+..| +++|.||||||||||++.|++.+.++.|.
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 80 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK 80 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHH
Confidence 788999863221000 0133332 23333 89999999999999999999999877442
Q ss_pred ----eEEEEcCCc--ccCCCC------C------Ccccc--------c---cc-----hhhcCCCCCcccHHHHHHHHHh
Q 026207 57 ----RVVIVDTSN--EIGGDG------D------IPHSA--------I---GT-----ARRMQVPEPSLQHKVMIEAVEN 102 (241)
Q Consensus 57 ----~v~~i~~~~--e~~~~~------~------~~~~~--------~---~~-----~~~~~~~~~~~~~~~~~~~~l~ 102 (241)
++.|+.+.. .+.... . .+... + +. ......+|++++++..+++++.
T Consensus 81 ~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~ 160 (288)
T PRK13643 81 PVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILA 160 (288)
T ss_pred HHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHH
Confidence 122332211 010000 0 00000 0 00 0011224567899999999999
Q ss_pred cCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 103 HMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 103 ~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++|+++++|||++++|+.... ..++.|.++++++|..+ .+..+ ||+|++
T Consensus 161 ~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~--------~~~~~---~dri~~ 216 (288)
T PRK13643 161 MEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD--------DVADY---ADYVYL 216 (288)
T ss_pred hCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH--------HHHHh---CCEEEE
Confidence 999999999999999995432 33446899999999986 45556 888877
|
|
| >TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB | Back alignment and domain information |
|---|
Probab=99.65 E-value=9.5e-16 Score=136.76 Aligned_cols=121 Identities=17% Similarity=0.178 Sum_probs=93.0
Q ss_pred eccEEEEEeCCCchHHHHHHHHHHhcccc--CCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHh
Q 026207 25 IFDFFLSYFRPGVGKTTVMREIARVLSDE--FQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVEN 102 (241)
Q Consensus 25 ~~g~vll~Gp~GsGKTTLl~~l~~~l~~~--~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 102 (241)
..|+++|+||+||||||+++++++.+.+. .+.++++++++.|+...... ...+...+..+......+...+..+++
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~--~~~~~v~Q~~v~~~~~~~~~~l~~aLR 210 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIE--TISASVCQSEIPRHLNNFAAGVRNALR 210 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccc--cccceeeeeeccccccCHHHHHHHHhc
Confidence 55799999999999999999999988543 24689999988886433210 001111222332234578888899999
Q ss_pred cCCcEEEEcCCCCHHhHHHHHHHHhCCcEEEEeecCCChhhhhcC
Q 026207 103 HMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKN 147 (241)
Q Consensus 103 ~~p~vlilDE~~~~~d~~~~~~~~~~g~~vi~t~H~~~~~~~~~~ 147 (241)
++||+++++|+++...+..+..++.+||.+++|+|++++.+++.+
T Consensus 211 ~~Pd~i~vGEiRd~et~~~al~aa~tGh~v~tTlHa~~~~~~i~R 255 (358)
T TIGR02524 211 RKPHAILVGEARDAETISAALEAALTGHPVYTTLHSSGVAETIRR 255 (358)
T ss_pred cCCCEEeeeeeCCHHHHHHHHHHHHcCCcEEEeeccCCHHHHHHH
Confidence 999999999999998888888899999999999999998777653
|
Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.7e-16 Score=138.63 Aligned_cols=123 Identities=15% Similarity=0.201 Sum_probs=83.1
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccC--CC----------------eEEEEcCCcccCCCCCCcccccc----------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEF--QK----------------RVVIVDTSNEIGGDGDIPHSAIG---------- 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~--g~----------------~v~~i~~~~e~~~~~~~~~~~~~---------- 79 (241)
++.|+||||||||||+++|++..+++. |. ++.++.+...+.....+ ..++.
T Consensus 33 ~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv-~enl~~~l~~~~~~~ 111 (362)
T TIGR03258 33 LLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKV-EDNVAFGLRAQKMPK 111 (362)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcH-HHHHHHHHHHcCCCH
Confidence 899999999999999999999998875 43 12222211111100000 00000
Q ss_pred -----c----h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhC--CcE
Q 026207 80 -----T----A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAER--GVM 131 (241)
Q Consensus 80 -----~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~--g~~ 131 (241)
. . +....+|++++|++++++++..+|+++++|||++++|+.... ...+. |.+
T Consensus 112 ~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~t 191 (362)
T TIGR03258 112 ADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELT 191 (362)
T ss_pred HHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCE
Confidence 0 0 112235667899999999999999999999999999995432 33333 789
Q ss_pred EEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 132 LIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 132 vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+|.++|..+ .+..+ +|+|++
T Consensus 192 il~vTHd~~--------ea~~l---~dri~v 211 (362)
T TIGR03258 192 ILCVTHDQD--------DALTL---ADKAGI 211 (362)
T ss_pred EEEEeCCHH--------HHHHh---CCEEEE
Confidence 999999986 55556 777776
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=99.65 E-value=1e-15 Score=128.88 Aligned_cols=148 Identities=18% Similarity=0.213 Sum_probs=93.9
Q ss_pred CccccceeeEEEEEeE-----EeeCcce--eecc-EEEEEeCCCchHHHHHHHHHHhccccCCC----------------
Q 026207 1 MLRLRNVFLLIVKFFY-----ALYSINK--IIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK---------------- 56 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~-----~~~~~~~--~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~---------------- 56 (241)
||+++|+.. ++-. .++...+ +..| +++|+||||||||||++.|++.+++..|.
T Consensus 1 ~i~~~~l~~---~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~ 77 (233)
T cd03258 1 MIELKNVSK---VFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKEL 77 (233)
T ss_pred CeEEecceE---EccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHH
Confidence 788888863 2211 2444432 3333 89999999999999999999999877443
Q ss_pred -----eEEEEcCCcccCCCCCCccc-cc-----c--------c----hh----------hcCCCCCcccHHHHHHHHHhc
Q 026207 57 -----RVVIVDTSNEIGGDGDIPHS-AI-----G--------T----AR----------RMQVPEPSLQHKVMIEAVENH 103 (241)
Q Consensus 57 -----~v~~i~~~~e~~~~~~~~~~-~~-----~--------~----~~----------~~~~~~~~~~~~~~~~~~l~~ 103 (241)
.+.|+.+...+.....+... .. + . .. ....+|.|++++..+++++..
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~ 157 (233)
T cd03258 78 RKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALAN 157 (233)
T ss_pred HHHHhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhc
Confidence 12222211111100000000 00 0 0 00 112246678999999999999
Q ss_pred CCcEEEEcCCCCHHhHHHHH-------HHHh-CCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 104 MPEVIIVDEIGTEAEAHACR-------SIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 104 ~p~vlilDE~~~~~d~~~~~-------~~~~-~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+|+++++|||++++|+.... ...+ .|.++|+++|..+ .+..+ ||++++
T Consensus 158 ~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~--------~~~~~---~d~i~~ 213 (233)
T cd03258 158 NPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME--------VVKRI---CDRVAV 213 (233)
T ss_pred CCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--------HHHHh---CCEEEE
Confidence 99999999999999995432 3333 4899999999876 55566 788776
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=99.65 E-value=1e-15 Score=127.16 Aligned_cols=124 Identities=19% Similarity=0.217 Sum_probs=83.1
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC----------------eEEEEcCCcccCCCCCC-------------cccc-
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK----------------RVVIVDTSNEIGGDGDI-------------PHSA- 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------~v~~i~~~~e~~~~~~~-------------~~~~- 77 (241)
+++|+||||||||||++.+++.+++..|. ++.|+.+.........+ ....
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~ 107 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEI 107 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHHHhHHHHcCCCHHHH
Confidence 89999999999999999999998876442 12333321111100000 0000
Q ss_pred ---cc-ch----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHh-CCcEEEEe
Q 026207 78 ---IG-TA----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAE-RGVMLIGT 135 (241)
Q Consensus 78 ---~~-~~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~-~g~~vi~t 135 (241)
.. .. .....+|++++++..+++++..+|+++++|||++++|+.... ...+ .|.++|++
T Consensus 108 ~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~ 187 (213)
T cd03259 108 RARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYV 187 (213)
T ss_pred HHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 00 00 012235668899999999999999999999999999995432 3223 48899999
Q ss_pred ecCCChhhhhcCCccccccccccEEEe
Q 026207 136 AHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 136 ~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+|... .+..+ ||+|+.
T Consensus 188 sH~~~--------~~~~~---~d~v~~ 203 (213)
T cd03259 188 THDQE--------EALAL---ADRIAV 203 (213)
T ss_pred ecCHH--------HHHHh---cCEEEE
Confidence 99886 55566 788776
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-15 Score=127.66 Aligned_cols=150 Identities=15% Similarity=0.127 Sum_probs=94.6
Q ss_pred CccccceeeEEEEEeEEeeCcce--eec-cEEEEEeCCCchHHHHHHHHHHhccccCCC---------------------
Q 026207 1 MLRLRNVFLLIVKFFYALYSINK--IIF-DFFLSYFRPGVGKTTVMREIARVLSDEFQK--------------------- 56 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~~--~~~-g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~--------------------- 56 (241)
||+++|+..-.-. -..++...+ +.. .+++|+||||||||||++.|++..+++.|.
T Consensus 1 ~l~~~~l~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 1 MIRFEHVSKAYLG-GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred CEEEEeeEEEecC-CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 7888888632200 122344332 223 389999999999999999999999876442
Q ss_pred eEEEEcCCcccCCCCCC------c-------ccc----c-cch----------hhcCCCCCcccHHHHHHHHHhcCCcEE
Q 026207 57 RVVIVDTSNEIGGDGDI------P-------HSA----I-GTA----------RRMQVPEPSLQHKVMIEAVENHMPEVI 108 (241)
Q Consensus 57 ~v~~i~~~~e~~~~~~~------~-------~~~----~-~~~----------~~~~~~~~~~~~~~~~~~~l~~~p~vl 108 (241)
.+.|+.+.........+ . ... . ... .....+|.+++++..+++++..+|+++
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 159 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVL 159 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEE
Confidence 12233221111000000 0 000 0 000 012235667899999999999999999
Q ss_pred EEcCCCCHHhHHHH-------HHHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 109 IVDEIGTEAEAHAC-------RSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 109 ilDE~~~~~d~~~~-------~~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++|||++++|+... ....+.|.++++++|..+ .+..+ ||+|+.
T Consensus 160 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~--------~~~~~---~d~i~~ 209 (222)
T PRK10908 160 LADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG--------LISRR---SYRMLT 209 (222)
T ss_pred EEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH--------HHHHh---CCEEEE
Confidence 99999999999532 233445889999999886 55666 788776
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.7e-16 Score=136.94 Aligned_cols=65 Identities=11% Similarity=0.216 Sum_probs=53.3
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|++++++..+++++..+|+++++|||++++|+.... ...+.|.++|+++|..+ .+.++ ||+
T Consensus 166 LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~--------~~~~~---adr 234 (305)
T PRK13651 166 LSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLD--------NVLEW---TKR 234 (305)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHH--------HHHHh---CCE
Confidence 4567799999999999999999999999999995432 33456899999999986 45556 888
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
|++
T Consensus 235 v~v 237 (305)
T PRK13651 235 TIF 237 (305)
T ss_pred EEE
Confidence 877
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.8e-15 Score=124.04 Aligned_cols=110 Identities=15% Similarity=0.225 Sum_probs=74.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcc--ccCCCeEEEEcCCccc----CCC-CCCcc-----------ccccchhhcCCCCC
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLS--DEFQKRVVIVDTSNEI----GGD-GDIPH-----------SAIGTARRMQVPEP 89 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~--~~~g~~v~~i~~~~e~----~~~-~~~~~-----------~~~~~~~~~~~~~~ 89 (241)
+++|+||||||||||++.+++... +..|. ++++ +..+ ... ...++ ..+........+|+
T Consensus 35 ~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~--i~~~-g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~LSg 111 (192)
T cd03232 35 LTALMGESGAGKTTLLDVLAGRKTAGVITGE--ILIN-GRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALLRGLSV 111 (192)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCcceE--EEEC-CEehHHHhhhceEEecccCccccCCcHHHHHHHHHHHhcCCH
Confidence 899999999999999999999753 34332 3333 2111 000 00011 11111011125788
Q ss_pred cccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCC
Q 026207 90 SLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 90 ~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~ 140 (241)
+++++..+++++..+|+++++|||++++|+.... ...+.|.++++++|..+
T Consensus 112 Ge~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~ 169 (192)
T cd03232 112 EQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPS 169 (192)
T ss_pred HHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCCh
Confidence 9999999999999999999999999999995432 33445889999999975
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.6e-16 Score=127.47 Aligned_cols=132 Identities=17% Similarity=0.197 Sum_probs=87.3
Q ss_pred CccccceeeEEEEEeEEeeCcceeecc---------EEEEEeCCCchHHHHHHHHHHhccccCCC---------------
Q 026207 1 MLRLRNVFLLIVKFFYALYSINKIIFD---------FFLSYFRPGVGKTTVMREIARVLSDEFQK--------------- 56 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~~~~~g---------~vll~Gp~GsGKTTLl~~l~~~l~~~~g~--------------- 56 (241)
||+++|+ ..-|+...+.+| ++.++|+||+|||||+++|++.+++..|.
T Consensus 3 mL~v~~l--------~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~ 74 (237)
T COG0410 3 MLEVENL--------SAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHE 74 (237)
T ss_pred ceeEEeE--------eecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHH
Confidence 6666666 456666666665 69999999999999999999999876332
Q ss_pred ----eEEEEcCCcccCCCCCC---------c-----------cccccchh--------hcCCCCCcccHHHHHHHHHhcC
Q 026207 57 ----RVVIVDTSNEIGGDGDI---------P-----------HSAIGTAR--------RMQVPEPSLQHKVMIEAVENHM 104 (241)
Q Consensus 57 ----~v~~i~~~~e~~~~~~~---------~-----------~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~ 104 (241)
-+.|+.++.++...-.+ . ......++ +-..+|++.+|..++++++..+
T Consensus 75 r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~ 154 (237)
T COG0410 75 RARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSR 154 (237)
T ss_pred HHhCCeEeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcC
Confidence 12344433333211000 0 00000111 2244677889999999999999
Q ss_pred CcEEEEcCCCCHHhHHHH-------HHHH-hCCcEEEEeecCCC
Q 026207 105 PEVIIVDEIGTEAEAHAC-------RSIA-ERGVMLIGTAHGEW 140 (241)
Q Consensus 105 p~vlilDE~~~~~d~~~~-------~~~~-~~g~~vi~t~H~~~ 140 (241)
|++++||||..++.|..+ ...+ +.|.+|+.+-+.-.
T Consensus 155 PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~ 198 (237)
T COG0410 155 PKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR 198 (237)
T ss_pred CCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHH
Confidence 999999999999988433 3444 34778877655544
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-15 Score=130.11 Aligned_cols=149 Identities=17% Similarity=0.140 Sum_probs=93.9
Q ss_pred CccccceeeEEEEEeEEeeCcce--eecc-EEEEEeCCCchHHHHHHHHHHhccccCCC---------------------
Q 026207 1 MLRLRNVFLLIVKFFYALYSINK--IIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK--------------------- 56 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~~--~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~--------------------- 56 (241)
||+++|+..-.- -+.++...+ +..| +++|+||||||||||++.|++.++++.|.
T Consensus 3 ~l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (250)
T PRK11264 3 AIEVKNLVKKFH--GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI 80 (250)
T ss_pred cEEEeceEEEEC--CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHH
Confidence 578888852211 113444432 3333 89999999999999999999998766442
Q ss_pred -----eEEEEcCCcccCCCCCCcccc------c-c--------ch--------------hhcCCCCCcccHHHHHHHHHh
Q 026207 57 -----RVVIVDTSNEIGGDGDIPHSA------I-G--------TA--------------RRMQVPEPSLQHKVMIEAVEN 102 (241)
Q Consensus 57 -----~v~~i~~~~e~~~~~~~~~~~------~-~--------~~--------------~~~~~~~~~~~~~~~~~~~l~ 102 (241)
.+.|+.+...+.....+.... . + .+ .....+|++++++..+++++.
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~ 160 (250)
T PRK11264 81 RQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALA 160 (250)
T ss_pred HHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHh
Confidence 122222111111000000000 0 0 00 011235667899999999999
Q ss_pred cCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 103 HMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 103 ~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
.+|+++++|||++++|+.... ...+.|.++|+++|... .+..+ ||+++.
T Consensus 161 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~--------~~~~~---~d~i~~ 216 (250)
T PRK11264 161 MRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS--------FARDV---ADRAIF 216 (250)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--------HHHHh---cCEEEE
Confidence 999999999999999995432 33445889999999886 55566 788776
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.4e-15 Score=126.81 Aligned_cols=123 Identities=15% Similarity=0.155 Sum_probs=81.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC----------------------eEEEEcCCcccCCCCCCcc------cccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK----------------------RVVIVDTSNEIGGDGDIPH------SAIG 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------------~v~~i~~~~e~~~~~~~~~------~~~~ 79 (241)
+++|+||||||||||++.|++.+++..|. .+.|+.+.........+.. ...+
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~ 111 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAG 111 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcC
Confidence 89999999999999999999999876432 1233322111110000000 0000
Q ss_pred --------c----h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHh-CC
Q 026207 80 --------T----A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAE-RG 129 (241)
Q Consensus 80 --------~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~-~g 129 (241)
. . .....+|++++++..+++++..+|+++++|||++++|+.... .... .|
T Consensus 112 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~ 191 (218)
T cd03255 112 VPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAG 191 (218)
T ss_pred CCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 0 0 012235667899999999999999999999999999995432 3333 58
Q ss_pred cEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 130 VMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 130 ~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
.++|+++|..+ .+. + ||+++.
T Consensus 192 ~tii~~sH~~~--------~~~-~---~d~v~~ 212 (218)
T cd03255 192 TTIVVVTHDPE--------LAE-Y---ADRIIE 212 (218)
T ss_pred CeEEEEECCHH--------HHh-h---hcEEEE
Confidence 89999999886 343 5 788776
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.3e-16 Score=131.51 Aligned_cols=65 Identities=14% Similarity=0.244 Sum_probs=52.6
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHh-CCcEEEEeecCCChhhhhcCCcccccccccc
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVD 158 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~-~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d 158 (241)
+|++++++..+++++..+|+++++|||++++|+.... ..++ .|.++|+++|... .+.++ ||
T Consensus 154 LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~--------~~~~~---~d 222 (255)
T PRK11300 154 LAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK--------LVMGI---SD 222 (255)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH--------HHHHh---CC
Confidence 5667899999999999999999999999999995432 3333 3899999999886 55566 78
Q ss_pred EEEe
Q 026207 159 TVTL 162 (241)
Q Consensus 159 ~V~~ 162 (241)
++++
T Consensus 223 ~i~~ 226 (255)
T PRK11300 223 RIYV 226 (255)
T ss_pred EEEE
Confidence 8776
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=99.64 E-value=2e-15 Score=126.20 Aligned_cols=125 Identities=21% Similarity=0.235 Sum_probs=83.6
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCC-----------------eEEEEcCCcccCCCCCCcc------cccc----
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQK-----------------RVVIVDTSNEIGGDGDIPH------SAIG---- 79 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-----------------~v~~i~~~~e~~~~~~~~~------~~~~---- 79 (241)
.+++|+||||||||||++.|+|.+++..|. ++.|+.+...+.....+.. ...+
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~ 106 (220)
T cd03265 27 EIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGA 106 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHHHHHHHHHcCCCHH
Confidence 389999999999999999999998776442 1233332211110000000 0000
Q ss_pred ----c----h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHh-CCcEEE
Q 026207 80 ----T----A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAE-RGVMLI 133 (241)
Q Consensus 80 ----~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~-~g~~vi 133 (241)
. . .....+|++++++..+++++..+|+++++|||++++|+.... ...+ .|.++|
T Consensus 107 ~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi 186 (220)
T cd03265 107 ERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTIL 186 (220)
T ss_pred HHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 0 0 012335678899999999999999999999999999995433 3333 488999
Q ss_pred EeecCCChhhhhcCCccccccccccEEEe
Q 026207 134 GTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 134 ~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+++|... .+..+ ||++++
T Consensus 187 ~~tH~~~--------~~~~~---~d~i~~ 204 (220)
T cd03265 187 LTTHYME--------EAEQL---CDRVAI 204 (220)
T ss_pred EEeCCHH--------HHHHh---CCEEEE
Confidence 9999886 55556 788776
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.1e-16 Score=130.26 Aligned_cols=138 Identities=14% Similarity=0.149 Sum_probs=86.7
Q ss_pred CccccceeeEEEEEeEEeeCcce--eecc-EEEEEeCCCchHHHHHHHHHHhccccCCC-----------------eEEE
Q 026207 1 MLRLRNVFLLIVKFFYALYSINK--IIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK-----------------RVVI 60 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~~--~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-----------------~v~~ 60 (241)
||+++|+..-.- -+.++...+ +..| +++|.||||||||||++.|++..++..|. .+.|
T Consensus 1 ~l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~ 78 (236)
T TIGR03864 1 ALEVAGLSFAYG--ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGV 78 (236)
T ss_pred CEEEEeeEEEEC--CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEE
Confidence 678888853211 122444332 3333 89999999999999999999998877442 1223
Q ss_pred EcCCcccCCCCCCccc-c-----cc--------c----h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcC
Q 026207 61 VDTSNEIGGDGDIPHS-A-----IG--------T----A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDE 112 (241)
Q Consensus 61 i~~~~e~~~~~~~~~~-~-----~~--------~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE 112 (241)
+.+...+.....+... . .+ . . .....+|+|++++..+++++..+|+++++||
T Consensus 79 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDE 158 (236)
T TIGR03864 79 VFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDE 158 (236)
T ss_pred eCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 3321111000000000 0 00 0 0 0122356678999999999999999999999
Q ss_pred CCCHHhHHHHH-------HHH-hCCcEEEEeecCCC
Q 026207 113 IGTEAEAHACR-------SIA-ERGVMLIGTAHGEW 140 (241)
Q Consensus 113 ~~~~~d~~~~~-------~~~-~~g~~vi~t~H~~~ 140 (241)
|++++|+.... ... +.|.++++++|..+
T Consensus 159 P~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~ 194 (236)
T TIGR03864 159 PTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVD 194 (236)
T ss_pred CccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChh
Confidence 99999995432 333 35889999999886
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.4e-16 Score=138.50 Aligned_cols=124 Identities=17% Similarity=0.184 Sum_probs=82.2
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCC----------------------eEEEEcCCcccCCCCCCcccccc-----
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQK----------------------RVVIVDTSNEIGGDGDIPHSAIG----- 79 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------------~v~~i~~~~e~~~~~~~~~~~~~----- 79 (241)
.+++|+||||||||||++.|++..+++.|. ++.|+.+...+.....+ ..++.
T Consensus 25 e~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv-~enl~~~~~~ 103 (352)
T PRK11144 25 GITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKV-RGNLRYGMAK 103 (352)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcH-HHHHHhhhhh
Confidence 389999999999999999999998877443 11122111111000000 00000
Q ss_pred ----c----h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHh-CCcEEE
Q 026207 80 ----T----A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAE-RGVMLI 133 (241)
Q Consensus 80 ----~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~-~g~~vi 133 (241)
. . .....+|++++|+..+++++..+|+++++|||++++|+.... ...+ .|.++|
T Consensus 104 ~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii 183 (352)
T PRK11144 104 SMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPIL 183 (352)
T ss_pred hhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEE
Confidence 0 0 112335667899999999999999999999999999995332 3333 488999
Q ss_pred EeecCCChhhhhcCCccccccccccEEEe
Q 026207 134 GTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 134 ~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
.++|..+ .+..+ ||++++
T Consensus 184 ~vTHd~~--------~~~~~---~d~i~~ 201 (352)
T PRK11144 184 YVSHSLD--------EILRL---ADRVVV 201 (352)
T ss_pred EEecCHH--------HHHHh---CCEEEE
Confidence 9999886 45556 777666
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.2e-15 Score=130.19 Aligned_cols=149 Identities=15% Similarity=0.135 Sum_probs=93.9
Q ss_pred CccccceeeEEEEEeEEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCC-------eEEEEcCCcccCCC
Q 026207 1 MLRLRNVFLLIVKFFYALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK-------RVVIVDTSNEIGGD 70 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-------~v~~i~~~~e~~~~ 70 (241)
||+++|+..-.- -+.++... .+..| +++|+||||||||||++.|++.+++..|. .+.|+.+...+...
T Consensus 4 ~l~~~~l~~~~~--~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~ 81 (251)
T PRK09544 4 LVSLENVSVSFG--QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTT 81 (251)
T ss_pred EEEEeceEEEEC--CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccc
Confidence 566777752110 01233332 23333 89999999999999999999998877442 34555432211110
Q ss_pred ---C------CCcc---ccccc-h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH----
Q 026207 71 ---G------DIPH---SAIGT-A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR---- 123 (241)
Q Consensus 71 ---~------~~~~---~~~~~-~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~---- 123 (241)
. ..+. ..... . .....+|++++++..+++++..+|+++++|||++++|+....
T Consensus 82 l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~ 161 (251)
T PRK09544 82 LPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYD 161 (251)
T ss_pred cChhHHHHHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHH
Confidence 0 0000 00000 0 112335678899999999999999999999999999995432
Q ss_pred ---HHHh-CCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 124 ---SIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 124 ---~~~~-~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
.... .|.++|+++|..+ .+..+ ||+|++
T Consensus 162 ~L~~~~~~~g~tiiivsH~~~--------~i~~~---~d~i~~ 193 (251)
T PRK09544 162 LIDQLRRELDCAVLMVSHDLH--------LVMAK---TDEVLC 193 (251)
T ss_pred HHHHHHHhcCCEEEEEecCHH--------HHHHh---CCEEEE
Confidence 2233 3889999999986 44555 677665
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.7e-15 Score=126.51 Aligned_cols=128 Identities=18% Similarity=0.112 Sum_probs=85.2
Q ss_pred eecc-EEEEEeCCCchHHHHHHHHHHhccccCCC-------------eEEEEcCCcccCCCCCCccc------ccc----
Q 026207 24 IIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK-------------RVVIVDTSNEIGGDGDIPHS------AIG---- 79 (241)
Q Consensus 24 ~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-------------~v~~i~~~~e~~~~~~~~~~------~~~---- 79 (241)
+..| +++|+||||||||||++.|++..++..|. .+.|+.+...+.....+... ..+
T Consensus 27 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~ 106 (220)
T cd03293 27 VEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKA 106 (220)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEecccccccCCCHHHHHHHHHHHcCCCHH
Confidence 3444 89999999999999999999998776442 23344322111110000000 000
Q ss_pred --------ch----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HH-HhCCcEEE
Q 026207 80 --------TA----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SI-AERGVMLI 133 (241)
Q Consensus 80 --------~~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~-~~~g~~vi 133 (241)
.. .....+|++++++..+++++..+|+++++|||++++|+.... +. .+.|.++|
T Consensus 107 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii 186 (220)
T cd03293 107 EARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVL 186 (220)
T ss_pred HHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 00 012335668899999999999999999999999999995432 33 23588999
Q ss_pred EeecCCChhhhhcCCccccccccccEEEe
Q 026207 134 GTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 134 ~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+++|... .+..+ ||++++
T Consensus 187 i~sH~~~--------~~~~~---~d~i~~ 204 (220)
T cd03293 187 LVTHDID--------EAVFL---ADRVVV 204 (220)
T ss_pred EEecCHH--------HHHHh---CCEEEE
Confidence 9999886 45556 787775
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.7e-15 Score=124.38 Aligned_cols=122 Identities=17% Similarity=0.240 Sum_probs=83.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc--cccCCCeEEEEcCCcccC-----CC-CCCccc-----------cccchhhcCCCC
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL--SDEFQKRVVIVDTSNEIG-----GD-GDIPHS-----------AIGTARRMQVPE 88 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l--~~~~g~~v~~i~~~~e~~-----~~-~~~~~~-----------~~~~~~~~~~~~ 88 (241)
+++|+||||||||||++.+++.. ++..|. ++++ +..+. .. ...++. .+....+...+|
T Consensus 37 ~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~--i~~~-g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~~LS 113 (194)
T cd03213 37 LTAIMGPSGAGKSTLLNALAGRRTGLGVSGE--VLIN-GRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLRGLS 113 (194)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCceE--EEEC-CEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhccCC
Confidence 89999999999999999999998 776443 3333 21110 00 001110 000001122577
Q ss_pred CcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEE
Q 026207 89 PSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVT 161 (241)
Q Consensus 89 ~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~ 161 (241)
.+++++..+++++..+|+++++|||++++|+.... ...+.|.++|+++|... . .+.++ +|+++
T Consensus 114 ~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~------~~~~~---~d~v~ 183 (194)
T cd03213 114 GGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPS-S------EIFEL---FDKLL 183 (194)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch-H------HHHHh---cCEEE
Confidence 89999999999999999999999999999995432 33445889999999874 1 23445 77776
Q ss_pred e
Q 026207 162 L 162 (241)
Q Consensus 162 ~ 162 (241)
.
T Consensus 184 ~ 184 (194)
T cd03213 184 L 184 (194)
T ss_pred E
Confidence 5
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.3e-15 Score=128.79 Aligned_cols=148 Identities=16% Similarity=0.108 Sum_probs=92.9
Q ss_pred ccccceeeEEEEEeEEeeCcce--eecc-EEEEEeCCCchHHHHHHHHHHhccccCCC----------------eEEEEc
Q 026207 2 LRLRNVFLLIVKFFYALYSINK--IIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK----------------RVVIVD 62 (241)
Q Consensus 2 ~~~~~~~~~~~r~~~~~~~~~~--~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------~v~~i~ 62 (241)
|+++|+..-.- -..++...+ +..| +++|.||||||||||++.|++..++..|. .+.|+.
T Consensus 3 l~~~~l~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~ 80 (239)
T cd03296 3 IEVRNVSKRFG--DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVF 80 (239)
T ss_pred EEEEeEEEEEC--CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEe
Confidence 77777752211 112344332 2233 89999999999999999999998776432 233443
Q ss_pred CCcccCCCCCC------c----------cc-----cc-cchh----------hcCCCCCcccHHHHHHHHHhcCCcEEEE
Q 026207 63 TSNEIGGDGDI------P----------HS-----AI-GTAR----------RMQVPEPSLQHKVMIEAVENHMPEVIIV 110 (241)
Q Consensus 63 ~~~e~~~~~~~------~----------~~-----~~-~~~~----------~~~~~~~~~~~~~~~~~~l~~~p~vlil 110 (241)
+...+.....+ . .. .. .... ....+|+|++++..+++++..+|+++++
T Consensus 81 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llll 160 (239)
T cd03296 81 QHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLL 160 (239)
T ss_pred cCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 22111100000 0 00 00 0000 1223566889999999999999999999
Q ss_pred cCCCCHHhHHHHH-------HHHh-CCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 111 DEIGTEAEAHACR-------SIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 111 DE~~~~~d~~~~~-------~~~~-~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
|||++++|+.... ...+ .|.++|+++|..+ .+..+ ||+++.
T Consensus 161 DEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~--------~~~~~---~d~i~~ 209 (239)
T cd03296 161 DEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE--------EALEV---ADRVVV 209 (239)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--------HHHHh---CCEEEE
Confidence 9999999995433 3333 4889999999886 45555 788776
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.8e-15 Score=142.58 Aligned_cols=114 Identities=19% Similarity=0.232 Sum_probs=95.9
Q ss_pred eeccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCC-CcccHHHHHHHHHh
Q 026207 24 IIFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPE-PSLQHKVMIEAVEN 102 (241)
Q Consensus 24 ~~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~ 102 (241)
...|+++++||+||||||++.+++..+.+. ..++++++++.|+...+. .+.++.. .+..+...+..+++
T Consensus 314 ~~~Glilv~G~tGSGKTTtl~a~l~~~~~~-~~~i~tiEdpvE~~~~~~---------~q~~v~~~~g~~~~~~l~~~LR 383 (564)
T TIGR02538 314 KPQGMVLVTGPTGSGKTVSLYTALNILNTE-EVNISTAEDPVEINLPGI---------NQVNVNPKIGLTFAAALRSFLR 383 (564)
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHHhhCCC-CceEEEecCCceecCCCc---------eEEEeccccCCCHHHHHHHHhc
Confidence 456799999999999999999999988644 578999999998854321 2333433 26789999999999
Q ss_pred cCCcEEEEcCCCCHHhHHHHHHHHhCCcEEEEeecCCChhhhhcC
Q 026207 103 HMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKN 147 (241)
Q Consensus 103 ~~p~vlilDE~~~~~d~~~~~~~~~~g~~vi~t~H~~~~~~~~~~ 147 (241)
++||+|+++|+++.+.+..+.+++.+||.+++|+|++++.+++.|
T Consensus 384 ~dPDvI~vGEiRd~eta~~a~~aa~tGHlv~tTlHa~~a~~~i~R 428 (564)
T TIGR02538 384 QDPDIIMVGEIRDLETAEIAIKAAQTGHLVLSTLHTNDAPETLAR 428 (564)
T ss_pred cCCCEEEeCCCCCHHHHHHHHHHHHcCCcEEEEeccCCHHHHHHH
Confidence 999999999999999888888999999999999999998887764
|
This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems. |
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.5e-16 Score=126.27 Aligned_cols=140 Identities=16% Similarity=0.159 Sum_probs=95.7
Q ss_pred CccccceeeEEEEEeEEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCC-----
Q 026207 1 MLRLRNVFLLIVKFFYALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGD----- 72 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~----- 72 (241)
|++++||++..- -+.++... .++.| ++.|+||||+|||||+..++++++.+.|. ++++ +.++.....
T Consensus 1 MI~i~nv~K~y~--~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~--i~i~-g~~~~~~~s~~LAk 75 (252)
T COG4604 1 MITIENVSKSYG--TKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGE--ITID-GLELTSTPSKELAK 75 (252)
T ss_pred CeeehhhhHhhC--CEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCce--EEEe-eeecccCChHHHHH
Confidence 888999963211 11122222 34443 89999999999999999999999988665 6665 333321100
Q ss_pred ---Cc-c-------------ccccch-----------------------------hhcCCCCCcccHHHHHHHHHhcCCc
Q 026207 73 ---IP-H-------------SAIGTA-----------------------------RRMQVPEPSLQHKVMIEAVENHMPE 106 (241)
Q Consensus 73 ---~~-~-------------~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~l~~~p~ 106 (241)
+. + ..+|++ +.+..+|+|++|++.++..+.++.|
T Consensus 76 ~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTd 155 (252)
T COG4604 76 KLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTD 155 (252)
T ss_pred HHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCc
Confidence 00 0 001111 2344577888999999999999999
Q ss_pred EEEEcCCCCHHhHHHHH--------HHHhCCcEEEEeecCCChhhhh
Q 026207 107 VIIVDEIGTEAEAHACR--------SIAERGVMLIGTAHGEWLENII 145 (241)
Q Consensus 107 vlilDE~~~~~d~~~~~--------~~~~~g~~vi~t~H~~~~~~~~ 145 (241)
.+++|||-+.+|..... .+.+-|++++.+.|..+....+
T Consensus 156 yvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~Y 202 (252)
T COG4604 156 YVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCY 202 (252)
T ss_pred EEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhh
Confidence 99999999999984332 3456799999999999855555
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.2e-16 Score=134.27 Aligned_cols=150 Identities=16% Similarity=0.164 Sum_probs=93.7
Q ss_pred CccccceeeEEEEEeEEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEE
Q 026207 1 MLRLRNVFLLIVKFFYALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVV 59 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~ 59 (241)
|++++|+..-.-. -..++..+ .+..| +++|+||||||||||++.|++.+++..|. ++.
T Consensus 3 ~l~~~~l~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 3 LIETRDLCYSYSG-SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred eEEEEEEEEEeCC-CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 4777777531110 01133332 34444 89999999999999999999998877443 122
Q ss_pred EEcCCcc--cCCCCC-----Cccc--cc----------------cc----hhhcCCCCCcccHHHHHHHHHhcCCcEEEE
Q 026207 60 IVDTSNE--IGGDGD-----IPHS--AI----------------GT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIV 110 (241)
Q Consensus 60 ~i~~~~e--~~~~~~-----~~~~--~~----------------~~----~~~~~~~~~~~~~~~~~~~~l~~~p~vlil 110 (241)
|+.+... +..... .... .. +. ......+|++++++..+++++..+|+++|+
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llil 161 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVL 161 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 2221110 000000 0000 00 00 011233566889999999999999999999
Q ss_pred cCCCCHHhHHHHH-------HHHh-CCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 111 DEIGTEAEAHACR-------SIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 111 DE~~~~~d~~~~~-------~~~~-~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
|||++++|+.... .... .|.++++++|..+ .+.++ ||+|++
T Consensus 162 DEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~--------~~~~~---~drv~~ 210 (277)
T PRK13652 162 DEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD--------LVPEM---ADYIYV 210 (277)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH--------HHHHh---CCEEEE
Confidence 9999999984332 3333 3899999999987 55566 888777
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.5e-15 Score=128.55 Aligned_cols=149 Identities=12% Similarity=0.060 Sum_probs=93.5
Q ss_pred CccccceeeEEEEEeEEeeCcce--eec-cEEEEEeCCCchHHHHHHHHHHhccccCCC-------------------eE
Q 026207 1 MLRLRNVFLLIVKFFYALYSINK--IIF-DFFLSYFRPGVGKTTVMREIARVLSDEFQK-------------------RV 58 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~~--~~~-g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-------------------~v 58 (241)
|++++|+..-.- -+.++...+ +.. .+++|+||||||||||++.|++..++..|. .+
T Consensus 3 ~l~~~~l~~~~~--~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (241)
T PRK10895 3 TLTAKNLAKAYK--GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI 80 (241)
T ss_pred eEEEeCcEEEeC--CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCe
Confidence 567777753210 112343332 323 389999999999999999999998876442 12
Q ss_pred EEEcCCcccCCCCCC------c---cccc------cc----h----------hhcCCCCCcccHHHHHHHHHhcCCcEEE
Q 026207 59 VIVDTSNEIGGDGDI------P---HSAI------GT----A----------RRMQVPEPSLQHKVMIEAVENHMPEVII 109 (241)
Q Consensus 59 ~~i~~~~e~~~~~~~------~---~~~~------~~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~vli 109 (241)
.|+.+...+.....+ . .... .. . .....+|++++++..+++++..+|++++
T Consensus 81 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 160 (241)
T PRK10895 81 GYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFIL 160 (241)
T ss_pred EEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 333221111100000 0 0000 00 0 0122356678999999999999999999
Q ss_pred EcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 110 VDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 110 lDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+|||++++|+.... ...+.|.++|+++|... .+.++ ||+++.
T Consensus 161 lDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~--------~~~~~---~d~v~~ 209 (241)
T PRK10895 161 LDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR--------ETLAV---CERAYI 209 (241)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH--------HHHHh---cCEEEE
Confidence 99999999985432 33456899999999875 45566 788776
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.5e-15 Score=128.71 Aligned_cols=150 Identities=18% Similarity=0.171 Sum_probs=93.5
Q ss_pred CccccceeeEEEEEeEEeeCcce--eecc-EEEEEeCCCchHHHHHHHHHHhccccCCC---------------------
Q 026207 1 MLRLRNVFLLIVKFFYALYSINK--IIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK--------------------- 56 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~~--~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~--------------------- 56 (241)
|++++|+..-.- .-..++...+ +..| +++|+||||||||||++.|++..++..|.
T Consensus 1 ~l~~~~l~~~~~-~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 1 MLEVENLSKVYP-NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred CeEEEeeeeecC-CCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 778888852110 0112344332 3333 89999999999999999999998776442
Q ss_pred eEEEEcCCcccCCCCCC------c----------------cccccc----h----------hhcCCCCCcccHHHHHHHH
Q 026207 57 RVVIVDTSNEIGGDGDI------P----------------HSAIGT----A----------RRMQVPEPSLQHKVMIEAV 100 (241)
Q Consensus 57 ~v~~i~~~~e~~~~~~~------~----------------~~~~~~----~----------~~~~~~~~~~~~~~~~~~~ 100 (241)
.+.|+.+.........+ . ...... . .....+|+|++++..++++
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~a 159 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARA 159 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHH
Confidence 12233211111100000 0 000000 0 0122356678999999999
Q ss_pred HhcCCcEEEEcCCCCHHhHHHHH-------HHH-hCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 101 ENHMPEVIIVDEIGTEAEAHACR-------SIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 101 l~~~p~vlilDE~~~~~d~~~~~-------~~~-~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+..+|+++++|||++++|+.... ... +.|.++|+++|..+ .+..+ ||++++
T Consensus 160 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~--------~~~~~---~d~v~~ 218 (243)
T TIGR02315 160 LAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD--------LAKKY---ADRIVG 218 (243)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--------HHHHh---cCeEEE
Confidence 99999999999999999995432 332 34889999999886 45556 788776
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2e-15 Score=130.00 Aligned_cols=112 Identities=23% Similarity=0.314 Sum_probs=85.4
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCC
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMP 105 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p 105 (241)
.+.++|+||+||||||++++++..+++. ..++++++++.|+....... . .+........+...+..+++++|
T Consensus 127 ~~~ili~G~tGSGKTT~l~all~~i~~~-~~~iv~iEd~~E~~l~~~~~--~-----~~~~~~~~~~~~~~l~~~LR~~p 198 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLLNALLEEIPPE-DERIVTIEDPPELRLPGPNQ--I-----QIQTRRDEISYEDLLKSALRQDP 198 (270)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHCHTT-TSEEEEEESSS-S--SCSSE--E-----EEEEETTTBSHHHHHHHHTTS--
T ss_pred ceEEEEECCCccccchHHHHHhhhcccc-ccceEEeccccceeecccce--E-----EEEeecCcccHHHHHHHHhcCCC
Confidence 5689999999999999999999999876 57999999888886532111 0 11111457889999999999999
Q ss_pred cEEEEcCCCCHHhHHHHHHHHhCCcEE-EEeecCCChhhhhc
Q 026207 106 EVIIVDEIGTEAEAHACRSIAERGVML-IGTAHGEWLENIIK 146 (241)
Q Consensus 106 ~vlilDE~~~~~d~~~~~~~~~~g~~v-i~t~H~~~~~~~~~ 146 (241)
|+++++|+++...... ..+.++|+.+ ++|+|++++.+++.
T Consensus 199 D~iiigEiR~~e~~~~-~~a~~tGh~~~~tT~Ha~s~~~~i~ 239 (270)
T PF00437_consen 199 DVIIIGEIRDPEAAEA-IQAANTGHLGSLTTLHANSAEDAIE 239 (270)
T ss_dssp SEEEESCE-SCHHHHH-HHHHHTT-EEEEEEEE-SSHHHHHH
T ss_pred CcccccccCCHhHHHH-HHhhccCCceeeeeeecCCHHHHHH
Confidence 9999999999987766 7888999998 99999999888775
|
These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B .... |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.3e-17 Score=130.09 Aligned_cols=153 Identities=20% Similarity=0.254 Sum_probs=103.2
Q ss_pred EEEEeEEeeCcceeecc---------EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC----------C
Q 026207 11 IVKFFYALYSINKIIFD---------FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD----------G 71 (241)
Q Consensus 11 ~~r~~~~~~~~~~~~~g---------~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~----------~ 71 (241)
..+.+.+.|+.....++ +|.+.||||+||||...++.|+++++.|+ +.++ ..++... +
T Consensus 6 ~a~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~--i~ld-~~diT~lPm~~RArlGig 82 (243)
T COG1137 6 VAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGK--ILLD-DEDITKLPMHKRARLGIG 82 (243)
T ss_pred EehhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCce--EEEC-CcccccCChHHHhhcCcc
Confidence 34444555665555444 79999999999999999999999999665 5554 2222110 1
Q ss_pred CCcccccc-------------------------c---------------h--hhcCCCCCcccHHHHHHHHHhcCCcEEE
Q 026207 72 DIPHSAIG-------------------------T---------------A--RRMQVPEPSLQHKVMIEAVENHMPEVII 109 (241)
Q Consensus 72 ~~~~~~~~-------------------------~---------------~--~~~~~~~~~~~~~~~~~~~l~~~p~vli 109 (241)
..|+...- + . ..-..+|++.+.+.-+++++..+|.+++
T Consensus 83 YLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiL 162 (243)
T COG1137 83 YLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFIL 162 (243)
T ss_pred cccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEE
Confidence 12221000 0 0 0012356678999999999999999999
Q ss_pred EcCCCCHHhHHHH-------HHHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe-CChHHHHHHHHHhhh
Q 026207 110 VDEIGTEAEAHAC-------RSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL-GDEEARARRCQKSIL 177 (241)
Q Consensus 110 lDE~~~~~d~~~~-------~~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~-~~~~~~~~~~~~~~k 177 (241)
||||+++.||-++ ...+.+|+.|+.|-|... +.-.+ ||+..+ .++...+.+.++++.
T Consensus 163 LDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR--------EtL~i---~dRaYIi~~G~vla~G~p~ei~ 227 (243)
T COG1137 163 LDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR--------ETLDI---CDRAYIISDGKVLAEGSPEEIV 227 (243)
T ss_pred ecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHH--------HHHhh---hheEEEEecCeEEecCCHHHHh
Confidence 9999999999433 356778999999999886 45556 888766 454444445555544
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.4e-15 Score=128.36 Aligned_cols=124 Identities=17% Similarity=0.181 Sum_probs=82.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC---------------------eEEEEcCCcccCCCCCCc---------ccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK---------------------RVVIVDTSNEIGGDGDIP---------HSA 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~---------------------~v~~i~~~~e~~~~~~~~---------~~~ 77 (241)
+++|+||||||||||++.+++.+++..|. .+.|+.+...+.....+. ...
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~ 107 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTR 107 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhccC
Confidence 89999999999999999999999876442 122222111110000000 000
Q ss_pred cc------c----h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHh-CC
Q 026207 78 IG------T----A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAE-RG 129 (241)
Q Consensus 78 ~~------~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~-~g 129 (241)
.. . . .....+|+|++++..+++++..+|+++++|||++++|+.... ...+ .|
T Consensus 108 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 187 (235)
T cd03261 108 LSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELG 187 (235)
T ss_pred CCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 00 0 0 011235667899999999999999999999999999995332 3333 48
Q ss_pred cEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 130 VMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 130 ~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
.++|+++|..+ .+..+ ||+|++
T Consensus 188 ~tvi~vsH~~~--------~~~~~---~d~v~~ 209 (235)
T cd03261 188 LTSIMVTHDLD--------TAFAI---ADRIAV 209 (235)
T ss_pred cEEEEEecCHH--------HHHHh---cCEEEE
Confidence 89999999886 55566 888877
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=4e-15 Score=123.02 Aligned_cols=138 Identities=20% Similarity=0.145 Sum_probs=86.5
Q ss_pred CccccceeeEEEEEeEEeeCcce--eecc-EEEEEeCCCchHHHHHHHHHHhccccCCC-----------------eEEE
Q 026207 1 MLRLRNVFLLIVKFFYALYSINK--IIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK-----------------RVVI 60 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~~--~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-----------------~v~~ 60 (241)
||+++|+..-.- ...++...+ +..| +++|.||||||||||++.+++.+++..|. ++.+
T Consensus 1 ~l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~ 78 (204)
T PRK13538 1 MLEARNLACERD--ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLY 78 (204)
T ss_pred CeEEEEEEEEEC--CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEE
Confidence 788888863211 122444432 3333 89999999999999999999999887543 0112
Q ss_pred EcCCcccCCCCCCcc------cccc-----c----h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCC
Q 026207 61 VDTSNEIGGDGDIPH------SAIG-----T----A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGT 115 (241)
Q Consensus 61 i~~~~e~~~~~~~~~------~~~~-----~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~ 115 (241)
+.+...+.....+.. ...+ . . .....+|++++++..+++++..+|+++++|||++
T Consensus 79 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~ 158 (204)
T PRK13538 79 LGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFT 158 (204)
T ss_pred eCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 211110000000000 0000 0 0 0122355677999999999999999999999999
Q ss_pred HHhHHHHH-------HHHhCCcEEEEeecCCC
Q 026207 116 EAEAHACR-------SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 116 ~~d~~~~~-------~~~~~g~~vi~t~H~~~ 140 (241)
++|+.... ...+.|.++|+++|..+
T Consensus 159 ~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 190 (204)
T PRK13538 159 AIDKQGVARLEALLAQHAEQGGMVILTTHQDL 190 (204)
T ss_pred cCCHHHHHHHHHHHHHHHHCCCEEEEEecChh
Confidence 99995432 33345889999999876
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.5e-15 Score=125.99 Aligned_cols=124 Identities=22% Similarity=0.280 Sum_probs=83.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcc--cCCCCC------------Ccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNE--IGGDGD------------IPH 75 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e--~~~~~~------------~~~ 75 (241)
++.|+||||||||||++.|++.+++..|. .+.|+.+... +..... ...
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~~~~ 108 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPE 108 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHHHHHHHHHHcCCCH
Confidence 89999999999999999999998876443 1223322111 100000 000
Q ss_pred -cccc----ch----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEE
Q 026207 76 -SAIG----TA----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLI 133 (241)
Q Consensus 76 -~~~~----~~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi 133 (241)
.... .. .....+|+|++++..+++++..+|+++++|||++++|+.... .....|.++|
T Consensus 109 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi 188 (211)
T cd03225 109 EEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTII 188 (211)
T ss_pred HHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEE
Confidence 0000 00 012335667899999999999999999999999999995432 3334588999
Q ss_pred EeecCCChhhhhcCCccccccccccEEEe
Q 026207 134 GTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 134 ~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
.++|... .+..+ ||+++.
T Consensus 189 ~~sH~~~--------~~~~~---~d~i~~ 206 (211)
T cd03225 189 IVTHDLD--------LLLEL---ADRVIV 206 (211)
T ss_pred EEeCCHH--------HHHHh---CCEEEE
Confidence 9999876 55566 787765
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.7e-16 Score=161.63 Aligned_cols=144 Identities=16% Similarity=0.122 Sum_probs=101.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC-----------------eEEEEcCCcccCCCC-------------CCcccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK-----------------RVVIVDTSNEIGGDG-------------DIPHSA 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-----------------~v~~i~~~~e~~~~~-------------~~~~~~ 77 (241)
++.|.||||||||||+++|+|.++++.|. .+.|+.+...+.... ..+...
T Consensus 1967 i~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~ 2046 (2272)
T TIGR01257 1967 CFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEE 2046 (2272)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcCCCHHH
Confidence 89999999999999999999999887543 122332211111000 000000
Q ss_pred -----------ccc----hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEe
Q 026207 78 -----------IGT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGT 135 (241)
Q Consensus 78 -----------~~~----~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t 135 (241)
.+. -.....+|+|++++..++.++..+|+++++|||++++|+...+ ..++.|+++|.|
T Consensus 2047 ~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILt 2126 (2272)
T TIGR01257 2047 IEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLT 2126 (2272)
T ss_pred HHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 000 0113346778899999999999999999999999999995443 344568999999
Q ss_pred ecCCChhhhhcCCccccccccccEEEe-CChHHHHHHHHHhhhccCCC
Q 026207 136 AHGEWLENIIKNPILSDLIGGVDTVTL-GDEEARARRCQKSILERKAP 182 (241)
Q Consensus 136 ~H~~~~~~~~~~p~l~~l~~~~d~V~~-~~~~~~~~~~~~~~k~r~g~ 182 (241)
+|..+ .++.+ ||+|++ .++.....+..+++|+++|.
T Consensus 2127 TH~me--------e~e~l---cDrV~IL~~G~i~~~Gs~q~Lk~~~g~ 2163 (2272)
T TIGR01257 2127 SHSME--------ECEAL---CTRLAIMVKGAFQCLGTIQHLKSKFGD 2163 (2272)
T ss_pred eCCHH--------HHHHh---CCEEEEEECCEEEEECCHHHHHHHhCC
Confidence 99997 67777 999988 55554445778888888874
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.3e-16 Score=131.96 Aligned_cols=124 Identities=18% Similarity=0.224 Sum_probs=82.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcc--cCCC--------------CCC
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNE--IGGD--------------GDI 73 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e--~~~~--------------~~~ 73 (241)
+++|+||||||||||++.|++.+++..|. ++.|+.+... +... ...
T Consensus 41 ~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~ 120 (267)
T PRK15112 41 TLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDL 120 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCC
Confidence 89999999999999999999999877442 1223322111 0000 000
Q ss_pred cc-c---ccc-chh-----------hcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHh-CC
Q 026207 74 PH-S---AIG-TAR-----------RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAE-RG 129 (241)
Q Consensus 74 ~~-~---~~~-~~~-----------~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~-~g 129 (241)
.. . ... .+. ....+|++++++..+++++..+|+++++|||++++|+.... ...+ .|
T Consensus 121 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g 200 (267)
T PRK15112 121 EPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQG 200 (267)
T ss_pred CHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcC
Confidence 00 0 000 000 11235667899999999999999999999999999995432 3333 48
Q ss_pred cEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 130 VMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 130 ~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
.++|+++|..+ .+..+ ||+++.
T Consensus 201 ~tviivsH~~~--------~~~~~---~d~i~~ 222 (267)
T PRK15112 201 ISYIYVTQHLG--------MMKHI---SDQVLV 222 (267)
T ss_pred cEEEEEeCCHH--------HHHHh---cCEEEE
Confidence 89999999886 55556 788776
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.2e-15 Score=128.01 Aligned_cols=124 Identities=16% Similarity=0.149 Sum_probs=84.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC-------------eEEEEcCCcccCCCCCCc-------cc-cccc----h-
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK-------------RVVIVDTSNEIGGDGDIP-------HS-AIGT----A- 81 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-------------~v~~i~~~~e~~~~~~~~-------~~-~~~~----~- 81 (241)
+++|+||||||||||++.|++.+++..|. ++.|+.+...+.....+. .. .... .
T Consensus 40 ~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~ 119 (257)
T PRK11247 40 FVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALA 119 (257)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHHhcccchHHHHHHHHHH
Confidence 89999999999999999999998876442 233443222111100000 00 0000 0
Q ss_pred ---------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HH-HhCCcEEEEeecCCChhhh
Q 026207 82 ---------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SI-AERGVMLIGTAHGEWLENI 144 (241)
Q Consensus 82 ---------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~-~~~g~~vi~t~H~~~~~~~ 144 (241)
.....+|+|++++..+++++..+|+++++|||++++|+.... .. .+.|.++|+++|...
T Consensus 120 ~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~---- 195 (257)
T PRK11247 120 AVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS---- 195 (257)
T ss_pred HcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH----
Confidence 012335678899999999999999999999999999995432 32 335889999999986
Q ss_pred hcCCccccccccccEEEe
Q 026207 145 IKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 145 ~~~p~l~~l~~~~d~V~~ 162 (241)
.+..+ ||+|+.
T Consensus 196 ----~~~~~---~d~i~~ 206 (257)
T PRK11247 196 ----EAVAM---ADRVLL 206 (257)
T ss_pred ----HHHHh---CCEEEE
Confidence 45556 787776
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.2e-15 Score=125.00 Aligned_cols=124 Identities=23% Similarity=0.262 Sum_probs=83.1
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC--------------eEEEEcCCcccCCCCCCccc------ccc--------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK--------------RVVIVDTSNEIGGDGDIPHS------AIG-------- 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~--------------~v~~i~~~~e~~~~~~~~~~------~~~-------- 79 (241)
+++|+||||||||||++.|++..++..|. .+.|+.+...+.....+... ..+
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~ 107 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARR 107 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHH
Confidence 89999999999999999999998776442 23344322111110000000 000
Q ss_pred c----h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecC
Q 026207 80 T----A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHG 138 (241)
Q Consensus 80 ~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~ 138 (241)
. . .....+|++++++..+++++..+|+++++|||++++|+.... ...+.|.++++++|.
T Consensus 108 ~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~ 187 (210)
T cd03269 108 RIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQ 187 (210)
T ss_pred HHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCC
Confidence 0 0 012235667899999999999999999999999999995332 334458899999998
Q ss_pred CChhhhhcCCccccccccccEEEe
Q 026207 139 EWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 139 ~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
.. .+.++ ||+++.
T Consensus 188 ~~--------~~~~~---~d~i~~ 200 (210)
T cd03269 188 ME--------LVEEL---CDRVLL 200 (210)
T ss_pred HH--------HHHHh---hhEEEE
Confidence 76 45556 787766
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1e-15 Score=132.20 Aligned_cols=150 Identities=13% Similarity=0.103 Sum_probs=93.8
Q ss_pred CccccceeeEEEEEeEEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEE
Q 026207 1 MLRLRNVFLLIVKFFYALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVV 59 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~ 59 (241)
|++++|+..-.- ....++..+ .+..| ++.|.||||||||||++.|++.+++..|. ++.
T Consensus 4 ~l~~~~l~~~~~-~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 82 (274)
T PRK13647 4 IIEVEDLHFRYK-DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVG 82 (274)
T ss_pred eEEEEEEEEEeC-CCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEE
Confidence 566777752110 001233332 23333 89999999999999999999998876442 123
Q ss_pred EEcCCcc--cCCCC------C------Ccc-c---cc-------cc----hhhcCCCCCcccHHHHHHHHHhcCCcEEEE
Q 026207 60 IVDTSNE--IGGDG------D------IPH-S---AI-------GT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIV 110 (241)
Q Consensus 60 ~i~~~~e--~~~~~------~------~~~-~---~~-------~~----~~~~~~~~~~~~~~~~~~~~l~~~p~vlil 110 (241)
|+.+... +.... . ... . .. +. ......+|++++++..+++++..+|+++++
T Consensus 83 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llll 162 (274)
T PRK13647 83 LVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVL 162 (274)
T ss_pred EEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 3332210 00000 0 000 0 00 00 001233566789999999999999999999
Q ss_pred cCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 111 DEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 111 DE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
|||++++|+.... ...+.|.+++.++|..+ .+.+. ||+++.
T Consensus 163 DEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~--------~~~~~---~d~i~~ 210 (274)
T PRK13647 163 DEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD--------LAAEW---ADQVIV 210 (274)
T ss_pred ECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH--------HHHHh---CCEEEE
Confidence 9999999995432 34445899999999986 45556 888776
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.1e-15 Score=129.13 Aligned_cols=149 Identities=19% Similarity=0.202 Sum_probs=93.2
Q ss_pred CccccceeeEEEEEeEEeeCcce--eecc-EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEE
Q 026207 1 MLRLRNVFLLIVKFFYALYSINK--IIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVV 59 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~~--~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~ 59 (241)
||+++|+..-.- -+.++...+ +..| +++|+||||||||||++.|++..++..|. .+.
T Consensus 2 ~l~~~~l~~~~~--~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (258)
T PRK13548 2 MLEARNLSVRLG--GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRA 79 (258)
T ss_pred eEEEEeEEEEeC--CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheE
Confidence 677788753211 112344332 3333 89999999999999999999998876442 122
Q ss_pred EEcCCcccCCCCCC------ccccc--------cc----h----------hhcCCCCCcccHHHHHHHHHh------cCC
Q 026207 60 IVDTSNEIGGDGDI------PHSAI--------GT----A----------RRMQVPEPSLQHKVMIEAVEN------HMP 105 (241)
Q Consensus 60 ~i~~~~e~~~~~~~------~~~~~--------~~----~----------~~~~~~~~~~~~~~~~~~~l~------~~p 105 (241)
|+.+...+.....+ ..... .. . .....+|++++++..+++++. .+|
T Consensus 80 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p 159 (258)
T PRK13548 80 VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPP 159 (258)
T ss_pred EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCC
Confidence 33322111000000 00000 00 0 012235667899999999998 499
Q ss_pred cEEEEcCCCCHHhHHHH-------HHHH-hCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 106 EVIIVDEIGTEAEAHAC-------RSIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 106 ~vlilDE~~~~~d~~~~-------~~~~-~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+++++|||++++|+... .... +.|.++|+++|... .+..+ ||+|++
T Consensus 160 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~--------~~~~~---~d~i~~ 213 (258)
T PRK13548 160 RWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN--------LAARY---ADRIVL 213 (258)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH--------HHHHh---cCEEEE
Confidence 99999999999999543 2333 56889999999886 45556 788776
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.4e-15 Score=128.38 Aligned_cols=148 Identities=15% Similarity=0.104 Sum_probs=92.7
Q ss_pred CccccceeeEEEEEe-EEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCC-------------------e
Q 026207 1 MLRLRNVFLLIVKFF-YALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK-------------------R 57 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~-~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-------------------~ 57 (241)
|++++|+.. ++- ..+++.. .+..| +++|+||||||||||++.+++..++..|. .
T Consensus 5 ~l~~~~l~~---~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSA---HYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEE---eeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 566777752 211 1233332 22333 89999999999999999999998876442 1
Q ss_pred EEEEcCCcccCCCCCC----------ccc-----c----ccch--------hhcCCCCCcccHHHHHHHHHhcCCcEEEE
Q 026207 58 VVIVDTSNEIGGDGDI----------PHS-----A----IGTA--------RRMQVPEPSLQHKVMIEAVENHMPEVIIV 110 (241)
Q Consensus 58 v~~i~~~~e~~~~~~~----------~~~-----~----~~~~--------~~~~~~~~~~~~~~~~~~~l~~~p~vlil 110 (241)
+.|+.+.........+ ... . .... .....+|++++++..+++++..+|+++++
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illl 161 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLL 161 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 2233221111100000 000 0 0000 01122566789999999999999999999
Q ss_pred cCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 111 DEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 111 DE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
|||++++|+.... ...+.|.++|.++|..+ .+..+ ||+++.
T Consensus 162 DEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~--------~~~~~---~d~i~~ 209 (237)
T PRK11614 162 DEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN--------QALKL---ADRGYV 209 (237)
T ss_pred cCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH--------HHHhh---CCEEEE
Confidence 9999999995432 33456899999999875 55666 788776
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.5e-16 Score=138.64 Aligned_cols=124 Identities=14% Similarity=0.175 Sum_probs=82.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC----------------------eEEEEcCCcccCCCCCCccc-c-----cc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK----------------------RVVIVDTSNEIGGDGDIPHS-A-----IG 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------------~v~~i~~~~e~~~~~~~~~~-~-----~~ 79 (241)
+++|+||||||||||++.|++.+++..|. ++.|+.+...+.....+... . .+
T Consensus 56 i~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~ 135 (400)
T PRK10070 56 IFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAG 135 (400)
T ss_pred EEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcC
Confidence 79999999999999999999999877443 12233221111100000000 0 00
Q ss_pred --------c----h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHH-hCC
Q 026207 80 --------T----A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIA-ERG 129 (241)
Q Consensus 80 --------~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~-~~g 129 (241)
. . .....+|+|++|+..+++++..+|+++++|||++++|+.... ... +.|
T Consensus 136 ~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g 215 (400)
T PRK10070 136 INAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQ 215 (400)
T ss_pred CCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCC
Confidence 0 0 012335668899999999999999999999999999995432 332 358
Q ss_pred cEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 130 VMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 130 ~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
.++|+++|..+ .+..+ +|+|++
T Consensus 216 ~TIIivTHd~~--------~~~~~---~Dri~v 237 (400)
T PRK10070 216 RTIVFISHDLD--------EAMRI---GDRIAI 237 (400)
T ss_pred CeEEEEECCHH--------HHHHh---CCEEEE
Confidence 89999999886 44455 677665
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.7e-15 Score=125.87 Aligned_cols=124 Identities=17% Similarity=0.194 Sum_probs=82.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC---------------------eEEEEcCCcccCCCCCCccc-cc-----c-
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK---------------------RVVIVDTSNEIGGDGDIPHS-AI-----G- 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~---------------------~v~~i~~~~e~~~~~~~~~~-~~-----~- 79 (241)
+++|.||||||||||++.+++.+++..|. .+.|+.+...+.....+... .. +
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~ 108 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGV 108 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHcCC
Confidence 89999999999999999999998876442 12222211111100000000 00 0
Q ss_pred -------c----hh----------hcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcE
Q 026207 80 -------T----AR----------RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVM 131 (241)
Q Consensus 80 -------~----~~----------~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~ 131 (241)
. .. ....+|++++++..+++++..+|+++++|||++++|+.... ...+.|.+
T Consensus 109 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~t 188 (214)
T cd03292 109 PPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTT 188 (214)
T ss_pred CHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCE
Confidence 0 00 11235667899999999999999999999999999995432 33445889
Q ss_pred EEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 132 LIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 132 vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+|+++|... .+..+ ||+++.
T Consensus 189 iiivtH~~~--------~~~~~---~d~i~~ 208 (214)
T cd03292 189 VVVATHAKE--------LVDTT---RHRVIA 208 (214)
T ss_pred EEEEeCCHH--------HHHHh---CCEEEE
Confidence 999999876 55556 787765
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.8e-15 Score=125.64 Aligned_cols=148 Identities=17% Similarity=0.170 Sum_probs=94.3
Q ss_pred CccccceeeEEEEEeE-----EeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCC----------------
Q 026207 1 MLRLRNVFLLIVKFFY-----ALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK---------------- 56 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~-----~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~---------------- 56 (241)
||+++|+.. ++-. .++... .+..| +++|.||||||||||++.+++.+++..|.
T Consensus 1 ~l~~~~v~~---~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~ 77 (228)
T cd03257 1 LLEVKNLSV---SFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLR 77 (228)
T ss_pred CeEEEeeeE---eccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhH
Confidence 678888852 2211 344443 33344 89999999999999999999998776432
Q ss_pred -----eEEEEcCCcc--cCCCCC--------------Ccc-cccc-----chh-----------hcCCCCCcccHHHHHH
Q 026207 57 -----RVVIVDTSNE--IGGDGD--------------IPH-SAIG-----TAR-----------RMQVPEPSLQHKVMIE 98 (241)
Q Consensus 57 -----~v~~i~~~~e--~~~~~~--------------~~~-~~~~-----~~~-----------~~~~~~~~~~~~~~~~ 98 (241)
.+.|+.+... +..... ... .... ... ....+|++++++..++
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~la 157 (228)
T cd03257 78 KIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIA 157 (228)
T ss_pred HHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHH
Confidence 2334332211 100000 000 0000 000 1122456789999999
Q ss_pred HHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhC-CcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 99 AVENHMPEVIIVDEIGTEAEAHACR-------SIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 99 ~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~-g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+++..+|+++++|||++++|+.... +.... |.++|+++|..+ .+..+ ||+++.
T Consensus 158 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~--------~~~~~---~d~i~~ 218 (228)
T cd03257 158 RALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG--------VVAKI---ADRVAV 218 (228)
T ss_pred HHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--------HHHHh---cCeEEE
Confidence 9999999999999999999995432 33333 889999999886 45556 788776
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.5e-15 Score=141.91 Aligned_cols=149 Identities=15% Similarity=0.118 Sum_probs=92.8
Q ss_pred CccccceeeEEEEEeEEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCC-------------------eE
Q 026207 1 MLRLRNVFLLIVKFFYALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK-------------------RV 58 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-------------------~v 58 (241)
||+++|+..-.- -+.++... .+..| +++|+||||||||||++.|+|.+++..|. .+
T Consensus 11 ~l~~~~l~~~~~--~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 88 (510)
T PRK15439 11 LLCARSISKQYS--GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGI 88 (510)
T ss_pred eEEEEeEEEEeC--CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCE
Confidence 566677652110 01233332 23344 89999999999999999999999876432 12
Q ss_pred EEEcCCcccCCCCCCc---------ccc-----------cc----chhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCC
Q 026207 59 VIVDTSNEIGGDGDIP---------HSA-----------IG----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIG 114 (241)
Q Consensus 59 ~~i~~~~e~~~~~~~~---------~~~-----------~~----~~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~ 114 (241)
.|+.+...+.....+. ... ++ .......+|+|+++++.+++++..+|+++++|||+
T Consensus 89 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt 168 (510)
T PRK15439 89 YLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPT 168 (510)
T ss_pred EEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 2332211111000000 000 00 00112345678899999999999999999999999
Q ss_pred CHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 115 TEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 115 ~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+++|+.... ...+.|.++|+++|... .+..+ ||+|++
T Consensus 169 ~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~--------~~~~~---~d~i~~ 212 (510)
T PRK15439 169 ASLTPAETERLFSRIRELLAQGVGIVFISHKLP--------EIRQL---ADRISV 212 (510)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH--------HHHHh---CCEEEE
Confidence 999995432 34456899999999986 44555 666665
|
|
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.6e-15 Score=121.06 Aligned_cols=117 Identities=17% Similarity=0.198 Sum_probs=87.1
Q ss_pred eccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcC--CCCCcccHHHHHHHHHh
Q 026207 25 IFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQ--VPEPSLQHKVMIEAVEN 102 (241)
Q Consensus 25 ~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~ 102 (241)
....++|+|||||||||+++++++.++++ .+++++++..|+.... + .......+.. ...........+..+++
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i~~~--~~~i~ied~~E~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~l~~~lR 98 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFIPPD--ERIITIEDTAELQLPH--P-NWVRLVTRPGNVEGSGEVTMADLLRSALR 98 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCCC--CCEEEECCccccCCCC--C-CEEEEEEecCCCCCCCccCHHHHHHHHhc
Confidence 35589999999999999999999999876 5678888777764321 0 0011100111 11235678889999999
Q ss_pred cCCcEEEEcCCCCHHhHHHHHHHHhCCcE-EEEeecCCChhhhhcC
Q 026207 103 HMPEVIIVDEIGTEAEAHACRSIAERGVM-LIGTAHGEWLENIIKN 147 (241)
Q Consensus 103 ~~p~vlilDE~~~~~d~~~~~~~~~~g~~-vi~t~H~~~~~~~~~~ 147 (241)
++||+++++|+++.+ +..+.++.++|+. +++|+|++++.+++.+
T Consensus 99 ~~pd~i~igEir~~e-a~~~~~a~~tGh~g~~~T~Ha~s~~~~~~R 143 (186)
T cd01130 99 MRPDRIIVGEVRGGE-ALDLLQAMNTGHPGGMTTIHANSAEEALTR 143 (186)
T ss_pred cCCCEEEEEccCcHH-HHHHHHHHhcCCCCceeeecCCCHHHHHHH
Confidence 999999999999886 4456677799999 9999999998777643
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.7e-16 Score=132.67 Aligned_cols=149 Identities=19% Similarity=0.163 Sum_probs=92.7
Q ss_pred CccccceeeEEEEEeEEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCC-------------------eE
Q 026207 1 MLRLRNVFLLIVKFFYALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK-------------------RV 58 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-------------------~v 58 (241)
|++++|+..-.-. ...++..+ .+..| +++|.||||||||||++.|++.+++..|. .+
T Consensus 1 ml~~~~l~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 1 MIRLENVSYSYPD-GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred CEEEEEEEEEcCC-CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 7888888632110 01234433 33444 89999999999999999999998877443 12
Q ss_pred EEEcCCcc--cCCCCC-----Ccccccc--------ch--------------hhcCCCCCcccHHHHHHHHHhcCCcEEE
Q 026207 59 VIVDTSNE--IGGDGD-----IPHSAIG--------TA--------------RRMQVPEPSLQHKVMIEAVENHMPEVII 109 (241)
Q Consensus 59 ~~i~~~~e--~~~~~~-----~~~~~~~--------~~--------------~~~~~~~~~~~~~~~~~~~l~~~p~vli 109 (241)
.|+.+... +..... ......+ .. .....+|++++++..+++++..+|++++
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 159 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLI 159 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 22221110 000000 0000000 00 0122356678999999999999999999
Q ss_pred EcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 110 VDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 110 lDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+|||++++|+.... .....|.++++++|..+ .+ .. ||+|+.
T Consensus 160 LDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~--------~~-~~---~d~v~~ 207 (274)
T PRK13644 160 FDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE--------EL-HD---ADRIIV 207 (274)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH--------HH-hh---CCEEEE
Confidence 99999999985432 33456899999999986 33 33 677776
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.1e-15 Score=125.11 Aligned_cols=124 Identities=16% Similarity=0.153 Sum_probs=82.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC-------------------eEEEEcCCcccCCCCCCcc------cccc---
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK-------------------RVVIVDTSNEIGGDGDIPH------SAIG--- 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-------------------~v~~i~~~~e~~~~~~~~~------~~~~--- 79 (241)
+++|.||||||||||++.+++.+++..|. .+.|+.+...+.....+.. ...+
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~ 107 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSK 107 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhcCCCH
Confidence 89999999999999999999998876442 1223221111100000000 0000
Q ss_pred -----c----h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEE
Q 026207 80 -----T----A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLI 133 (241)
Q Consensus 80 -----~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi 133 (241)
. . .....+|++++++..+++++..+|+++++|||++++|+.... +..+.|.++|
T Consensus 108 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii 187 (232)
T cd03218 108 KEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVL 187 (232)
T ss_pred HHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 0 0 011235667799999999999999999999999999995432 3344688999
Q ss_pred EeecCCChhhhhcCCccccccccccEEEe
Q 026207 134 GTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 134 ~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+++|..+ .+..+ ||+++.
T Consensus 188 ~~sH~~~--------~~~~~---~d~i~~ 205 (232)
T cd03218 188 ITDHNVR--------ETLSI---TDRAYI 205 (232)
T ss_pred EEeCCHH--------HHHHh---CCEEEE
Confidence 9999875 45566 788776
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.5e-15 Score=130.81 Aligned_cols=148 Identities=14% Similarity=0.144 Sum_probs=92.1
Q ss_pred CccccceeeEEEEEe-EEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCC--------------------
Q 026207 1 MLRLRNVFLLIVKFF-YALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK-------------------- 56 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~-~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-------------------- 56 (241)
||+++|+.. ++- +.++..+ .+..| +++|+||||||||||++.|++..++..|.
T Consensus 7 ~l~~~~l~~---~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (269)
T PRK11831 7 LVDMRGVSF---TRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR 83 (269)
T ss_pred eEEEeCeEE---EECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHh
Confidence 567777752 211 1233332 23333 89999999999999999999998876442
Q ss_pred -eEEEEcCCcccCCCCCCccc------cc-c--c----------hh----------hcCCCCCcccHHHHHHHHHhcCCc
Q 026207 57 -RVVIVDTSNEIGGDGDIPHS------AI-G--T----------AR----------RMQVPEPSLQHKVMIEAVENHMPE 106 (241)
Q Consensus 57 -~v~~i~~~~e~~~~~~~~~~------~~-~--~----------~~----------~~~~~~~~~~~~~~~~~~l~~~p~ 106 (241)
++.|+.+...+.....+... .. . . .. ....+|+|++++..+++++..+|+
T Consensus 84 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~ 163 (269)
T PRK11831 84 KRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPD 163 (269)
T ss_pred hcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 12233221111100000000 00 0 0 00 112356678999999999999999
Q ss_pred EEEEcCCCCHHhHHHHH-------HHHh-CCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 107 VIIVDEIGTEAEAHACR-------SIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 107 vlilDE~~~~~d~~~~~-------~~~~-~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++++|||++++|+.... ...+ .|.++|+++|... .+..+ ||++++
T Consensus 164 lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~--------~~~~~---~d~v~~ 216 (269)
T PRK11831 164 LIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP--------EVLSI---ADHAYI 216 (269)
T ss_pred EEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH--------HHHHh---hCEEEE
Confidence 99999999999995433 3323 4889999999875 45556 777766
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.4e-16 Score=133.98 Aligned_cols=128 Identities=18% Similarity=0.208 Sum_probs=84.7
Q ss_pred eecc-EEEEEeCCCchHHHHHHHHHHhccccCCC--------------------eEEEEcCCcc--cCCCC------C--
Q 026207 24 IIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK--------------------RVVIVDTSNE--IGGDG------D-- 72 (241)
Q Consensus 24 ~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~--------------------~v~~i~~~~e--~~~~~------~-- 72 (241)
+..| +++|.||||||||||++.+++.+++..|. ++.|+.+..+ +.... .
T Consensus 30 i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~ 109 (287)
T PRK13637 30 IEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGP 109 (287)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhccccccHHHHHHhHH
Confidence 3344 89999999999999999999999877442 1233322111 00000 0
Q ss_pred ----Cccc-----------cccc------hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------H
Q 026207 73 ----IPHS-----------AIGT------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------S 124 (241)
Q Consensus 73 ----~~~~-----------~~~~------~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~ 124 (241)
.... ..+. -.....+|++++++..+++++..+|+++|+|||++++|+.... .
T Consensus 110 ~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~ 189 (287)
T PRK13637 110 INLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKE 189 (287)
T ss_pred HHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHH
Confidence 0000 0000 0012234567899999999999999999999999999995432 3
Q ss_pred HHh-CCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 125 IAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 125 ~~~-~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
..+ .|.++|+++|... .+..+ ||+|++
T Consensus 190 l~~~~g~tvi~vtHd~~--------~~~~~---~drv~~ 217 (287)
T PRK13637 190 LHKEYNMTIILVSHSME--------DVAKL---ADRIIV 217 (287)
T ss_pred HHHhcCCEEEEEeCCHH--------HHHHh---CCEEEE
Confidence 333 4899999999986 45556 888877
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.3e-15 Score=136.80 Aligned_cols=123 Identities=20% Similarity=0.222 Sum_probs=82.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC----------------eEEEEcCCcccCCCCCCcccccc------------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK----------------RVVIVDTSNEIGGDGDIPHSAIG------------ 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------~v~~i~~~~e~~~~~~~~~~~~~------------ 79 (241)
++.|.||||||||||+++|+|..+++.|. ++.++.+...+.....+. .++.
T Consensus 42 ~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~-eNi~~~l~~~~~~~~~ 120 (375)
T PRK09452 42 FLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVF-ENVAFGLRMQKTPAAE 120 (375)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHH-HHHHHHHhhcCCCHHH
Confidence 89999999999999999999999877442 123332221111100000 0000
Q ss_pred ---c----h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHH-hCCcEEEE
Q 026207 80 ---T----A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIA-ERGVMLIG 134 (241)
Q Consensus 80 ---~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~-~~g~~vi~ 134 (241)
. . +....+|++++|++++++++..+|+++++|||.+.+|+.... ... +.|.++|.
T Consensus 121 ~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~ 200 (375)
T PRK09452 121 ITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVF 200 (375)
T ss_pred HHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 0 0 012235668899999999999999999999999999994332 222 35899999
Q ss_pred eecCCChhhhhcCCccccccccccEEEe
Q 026207 135 TAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 135 t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++|... .+..+ +|+|++
T Consensus 201 vTHd~~--------ea~~l---aDri~v 217 (375)
T PRK09452 201 VTHDQE--------EALTM---SDRIVV 217 (375)
T ss_pred EeCCHH--------HHHHh---CCEEEE
Confidence 999986 44555 777766
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.9e-16 Score=124.28 Aligned_cols=109 Identities=14% Similarity=0.145 Sum_probs=76.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccC-------CC-CCCcccc-c--cchh-h-cCCCCCcccHH
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIG-------GD-GDIPHSA-I--GTAR-R-MQVPEPSLQHK 94 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~-------~~-~~~~~~~-~--~~~~-~-~~~~~~~~~~~ 94 (241)
+++|.||||||||||++.+++..++..|. +.++ +.++. .. ...++.. + .... . ...+|.+++++
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~~~~~G~--i~~~-g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G~~qr 106 (178)
T cd03247 30 KIALLGRSGSGKSTLLQLLTGDLKPQQGE--ITLD-GVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGGERQR 106 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCCCE--EEEC-CEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHHHHHH
Confidence 89999999999999999999999887554 3444 22211 00 1111110 0 0000 0 34567789999
Q ss_pred HHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCC
Q 026207 95 VMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 95 ~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~ 140 (241)
..+++++..+|+++++|||++++|+.... .. ..+.++++++|...
T Consensus 107 v~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~-~~~~tii~~sh~~~ 158 (178)
T cd03247 107 LALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEV-LKDKTLIWITHHLT 158 (178)
T ss_pred HHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHH-cCCCEEEEEecCHH
Confidence 99999999999999999999999985432 22 34788999999885
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.4e-15 Score=123.92 Aligned_cols=124 Identities=18% Similarity=0.200 Sum_probs=82.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC--------------------eEEEEcCCcccCCCCCCcccc-c------c-
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK--------------------RVVIVDTSNEIGGDGDIPHSA-I------G- 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~--------------------~v~~i~~~~e~~~~~~~~~~~-~------~- 79 (241)
+++|.||||||||||++.|++.+++..|. .+.|+.+.........+.... . +
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~ 107 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGM 107 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHhcCC
Confidence 89999999999999999999998876442 122222111111000000000 0 0
Q ss_pred -------c----h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcE
Q 026207 80 -------T----A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVM 131 (241)
Q Consensus 80 -------~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~ 131 (241)
. . .....+|++++++..+++++..+|+++++|||++++|+.... ...+.|.+
T Consensus 108 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~t 187 (213)
T cd03262 108 SKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMT 187 (213)
T ss_pred CHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCE
Confidence 0 0 012235667899999999999999999999999999995432 33446889
Q ss_pred EEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 132 LIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 132 vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+|.++|..+ .+..+ ||++++
T Consensus 188 vi~~sh~~~--------~~~~~---~d~i~~ 207 (213)
T cd03262 188 MVVVTHEMG--------FAREV---ADRVIF 207 (213)
T ss_pred EEEEeCCHH--------HHHHh---CCEEEE
Confidence 999999886 55566 787765
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.6e-15 Score=127.08 Aligned_cols=149 Identities=15% Similarity=0.104 Sum_probs=93.7
Q ss_pred CccccceeeEEEEEeEEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCC--------------------e
Q 026207 1 MLRLRNVFLLIVKFFYALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK--------------------R 57 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~--------------------~ 57 (241)
||+++|+..-.- -+.++... .+..| +++|+||||||||||++.+++.+++..|. .
T Consensus 1 ~l~~~~l~~~~~--~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 1 MIEFKNVSKHFG--PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred CEEEEeEEEEEC--CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 788888863210 01234333 23333 89999999999999999999998876442 1
Q ss_pred EEEEcCCcccCCCCCCccc-cc------c------------ch----------hhcCCCCCcccHHHHHHHHHhcCCcEE
Q 026207 58 VVIVDTSNEIGGDGDIPHS-AI------G------------TA----------RRMQVPEPSLQHKVMIEAVENHMPEVI 108 (241)
Q Consensus 58 v~~i~~~~e~~~~~~~~~~-~~------~------------~~----------~~~~~~~~~~~~~~~~~~~l~~~p~vl 108 (241)
+.|+.+...+.....+... .. + .. .....+|++++++..+++++..+|+++
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 158 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLM 158 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 2233221111100000000 00 0 00 011234567799999999999999999
Q ss_pred EEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 109 IVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 109 ilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++|||++++|+.... ..++.|.++|+++|... .+..+ ||++++
T Consensus 159 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~--------~~~~~---~d~i~~ 208 (240)
T PRK09493 159 LFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG--------FAEKV---ASRLIF 208 (240)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--------HHHHh---CCEEEE
Confidence 999999999995432 33446889999999886 45555 788776
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.6e-15 Score=123.87 Aligned_cols=124 Identities=18% Similarity=0.225 Sum_probs=82.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC----------------eEEEEcCCcccCCCCCC-------------cccc-
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK----------------RVVIVDTSNEIGGDGDI-------------PHSA- 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------~v~~i~~~~e~~~~~~~-------------~~~~- 77 (241)
+++|.||||||||||++.+++.+++..|. ++.|+.+...+.....+ ....
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~ 107 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEI 107 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHHHHHHHhcCCCHHHH
Confidence 89999999999999999999998776432 13333322111100000 0000
Q ss_pred ---cc-chh----------hcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHH-hCCcEEEEe
Q 026207 78 ---IG-TAR----------RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIA-ERGVMLIGT 135 (241)
Q Consensus 78 ---~~-~~~----------~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~-~~g~~vi~t 135 (241)
.. ... ....+|++++++..+++++..+|+++++|||++++|+.... ... +.|.++|++
T Consensus 108 ~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~ 187 (213)
T cd03301 108 DERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYV 187 (213)
T ss_pred HHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 00 000 11235667899999999999999999999999999995433 323 348999999
Q ss_pred ecCCChhhhhcCCccccccccccEEEe
Q 026207 136 AHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 136 ~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+|... .+..+ +|+++.
T Consensus 188 sH~~~--------~~~~~---~d~i~~ 203 (213)
T cd03301 188 THDQV--------EAMTM---ADRIAV 203 (213)
T ss_pred eCCHH--------HHHHh---cCeEEE
Confidence 99886 45555 777765
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.8e-16 Score=133.19 Aligned_cols=128 Identities=19% Similarity=0.211 Sum_probs=85.5
Q ss_pred eecc-EEEEEeCCCchHHHHHHHHHHhccccCCC----------------------eEEEEcCCcc--cCCCC-----C-
Q 026207 24 IIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK----------------------RVVIVDTSNE--IGGDG-----D- 72 (241)
Q Consensus 24 ~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------------~v~~i~~~~e--~~~~~-----~- 72 (241)
+..| ++.|.||||||||||++.|++.+++..|. .+.|+.+... +.... .
T Consensus 30 i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~ 109 (287)
T PRK13641 30 LEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEF 109 (287)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhccchHHHHHHH
Confidence 3344 89999999999999999999999887442 1223321110 00000 0
Q ss_pred --Cccc-----c----------ccc-----hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------
Q 026207 73 --IPHS-----A----------IGT-----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR------- 123 (241)
Q Consensus 73 --~~~~-----~----------~~~-----~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~------- 123 (241)
.... . ++. ......+|++++++..+++++..+|+++++|||++++|+....
T Consensus 110 ~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~ 189 (287)
T PRK13641 110 GPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFK 189 (287)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence 0000 0 000 0112235667899999999999999999999999999995432
Q ss_pred HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 124 SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 124 ~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
...+.|.++|+++|... .+..+ ||+|++
T Consensus 190 ~l~~~g~tvlivsH~~~--------~~~~~---~d~v~~ 217 (287)
T PRK13641 190 DYQKAGHTVILVTHNMD--------DVAEY---ADDVLV 217 (287)
T ss_pred HHHhCCCEEEEEeCCHH--------HHHHh---CCEEEE
Confidence 33456899999999886 55666 888877
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.4e-15 Score=125.02 Aligned_cols=54 Identities=24% Similarity=0.193 Sum_probs=45.0
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCC
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~ 140 (241)
+|++++++..+++++..+|+++++|||++++|+.... .....|.++|+++|...
T Consensus 150 LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~ 210 (224)
T TIGR02324 150 FSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEE 210 (224)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 4557799999999999999999999999999995433 33445899999999975
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.9e-15 Score=128.09 Aligned_cols=65 Identities=20% Similarity=0.254 Sum_probs=52.7
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|++++++..+++++..+|+++++|||++++|+.... ..++.|.++|+++|... .+..+ ||+
T Consensus 153 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~--------~~~~~---~d~ 221 (257)
T PRK10619 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG--------FARHV---SSH 221 (257)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--------HHHHh---cCE
Confidence 4557799999999999999999999999999995432 34456899999999876 45556 788
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
|+.
T Consensus 222 i~~ 224 (257)
T PRK10619 222 VIF 224 (257)
T ss_pred EEE
Confidence 776
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.8e-15 Score=122.75 Aligned_cols=124 Identities=15% Similarity=0.205 Sum_probs=83.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC----------------eEEEEcCCcccCCCCCCcc-------------ccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK----------------RVVIVDTSNEIGGDGDIPH-------------SAI 78 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------~v~~i~~~~e~~~~~~~~~-------------~~~ 78 (241)
+++|.||||||||||++.+++..++..|. .+.|+.+...+.....+.. ...
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~ 107 (208)
T cd03268 28 IYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRI 107 (208)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcCCcHHHH
Confidence 89999999999999999999998876442 1223332211110000000 000
Q ss_pred cc-h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCC
Q 026207 79 GT-A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 79 ~~-~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~ 140 (241)
.. . .....+|++++++..+++++..+|+++++|||++++|+.... ...+.|.++|+++|...
T Consensus 108 ~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~ 187 (208)
T cd03268 108 DEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLS 187 (208)
T ss_pred HHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 00 0 012235667899999999999999999999999999995432 33346889999999886
Q ss_pred hhhhhcCCccccccccccEEEe
Q 026207 141 LENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 141 ~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
.+..+ +|+++.
T Consensus 188 --------~~~~~---~d~v~~ 198 (208)
T cd03268 188 --------EIQKV---ADRIGI 198 (208)
T ss_pred --------HHHHh---cCEEEE
Confidence 45555 777766
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.1e-16 Score=133.56 Aligned_cols=117 Identities=19% Similarity=0.235 Sum_probs=76.8
Q ss_pred eecc-EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcc-cCCCCCCccc-cc----
Q 026207 24 IIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNE-IGGDGDIPHS-AI---- 78 (241)
Q Consensus 24 ~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e-~~~~~~~~~~-~~---- 78 (241)
+..| +++|+||||||||||++.|++.+++..|. .+.|+.+... ......+... ..
T Consensus 30 i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~ 109 (279)
T PRK13635 30 VYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLEN 109 (279)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhh
Confidence 3344 89999999999999999999999877543 1222221110 0000000000 00
Q ss_pred ---c------ch--------------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHh-
Q 026207 79 ---G------TA--------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAE- 127 (241)
Q Consensus 79 ---~------~~--------------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~- 127 (241)
. .+ .....+|++++++..+++++..+|+++++|||++++|+.... ...+
T Consensus 110 ~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~ 189 (279)
T PRK13635 110 IGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQ 189 (279)
T ss_pred CCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHc
Confidence 0 00 012235667899999999999999999999999999995432 3333
Q ss_pred CCcEEEEeecCCC
Q 026207 128 RGVMLIGTAHGEW 140 (241)
Q Consensus 128 ~g~~vi~t~H~~~ 140 (241)
.|.++++++|...
T Consensus 190 ~~~tilivsH~~~ 202 (279)
T PRK13635 190 KGITVLSITHDLD 202 (279)
T ss_pred CCCEEEEEecCHH
Confidence 3899999999986
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.5e-15 Score=122.32 Aligned_cols=135 Identities=15% Similarity=0.109 Sum_probs=86.6
Q ss_pred CccccceeeEEEEEeEEeeCcce--e-eccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCC-------C
Q 026207 1 MLRLRNVFLLIVKFFYALYSINK--I-IFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGG-------D 70 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~~--~-~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~-------~ 70 (241)
||+++|+..-. . -..++...+ + ...+++|.||||||||||++.+++..++..|. ++++ +..+.. .
T Consensus 1 ml~~~~l~~~~-~-~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~--v~~~-g~~~~~~~~~~~~~ 75 (200)
T PRK13540 1 MLDVIELDFDY-H-DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGE--ILFE-RQSIKKDLCTYQKQ 75 (200)
T ss_pred CEEEEEEEEEe-C-CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCee--EEEC-CCccccCHHHHHhh
Confidence 78888886321 1 122444332 2 22389999999999999999999999877553 3333 111100 0
Q ss_pred -CCC-------cc----cccc----------c----h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCC
Q 026207 71 -GDI-------PH----SAIG----------T----A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIG 114 (241)
Q Consensus 71 -~~~-------~~----~~~~----------~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~ 114 (241)
... +. ..+. . . .....+|++++++..+++++..+|+++++|||+
T Consensus 76 i~~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~ 155 (200)
T PRK13540 76 LCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPL 155 (200)
T ss_pred eEEeccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 000 00 0000 0 0 011235667899999999999999999999999
Q ss_pred CHHhHHHHH-------HHHhCCcEEEEeecCCC
Q 026207 115 TEAEAHACR-------SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 115 ~~~d~~~~~-------~~~~~g~~vi~t~H~~~ 140 (241)
+++|+.... ..++.|.++|+++|...
T Consensus 156 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 188 (200)
T PRK13540 156 VALDELSLLTIITKIQEHRAKGGAVLLTSHQDL 188 (200)
T ss_pred cccCHHHHHHHHHHHHHHHHcCCEEEEEeCCch
Confidence 999995432 33456889999999875
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.3e-15 Score=132.21 Aligned_cols=150 Identities=15% Similarity=0.144 Sum_probs=93.9
Q ss_pred CccccceeeEEEEEeEEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCC--------------------e
Q 026207 1 MLRLRNVFLLIVKFFYALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK--------------------R 57 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~--------------------~ 57 (241)
||+++|+..-.- .-..++..+ .+..| +++|.||||||||||++.|++.+++..|. .
T Consensus 5 ~l~~~~l~~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 5 ILKVEELNYNYS-DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred eEEEEeEEEEeC-CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 567777752110 001234332 33344 89999999999999999999999877442 1
Q ss_pred EEEEcCCcc--cCCCC------------CCcccc-ccc----h----------hhcCCCCCcccHHHHHHHHHhcCCcEE
Q 026207 58 VVIVDTSNE--IGGDG------------DIPHSA-IGT----A----------RRMQVPEPSLQHKVMIEAVENHMPEVI 108 (241)
Q Consensus 58 v~~i~~~~e--~~~~~------------~~~~~~-~~~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~vl 108 (241)
+.|+.+... +.... ..+... ... . .....+|++++++..+++++..+|+++
T Consensus 84 ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lL 163 (283)
T PRK13636 84 VGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVL 163 (283)
T ss_pred EEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 233322110 00000 000000 000 0 012235667899999999999999999
Q ss_pred EEcCCCCHHhHHHHH-------HHHh-CCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 109 IVDEIGTEAEAHACR-------SIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 109 ilDE~~~~~d~~~~~-------~~~~-~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
|+|||++++|+.... ...+ .|.++++++|..+ .+..+ ||++++
T Consensus 164 ilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~--------~~~~~---~dri~~ 214 (283)
T PRK13636 164 VLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID--------IVPLY---CDNVFV 214 (283)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH--------HHHHh---CCEEEE
Confidence 999999999995432 3333 3899999999987 45556 788776
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.7e-15 Score=136.27 Aligned_cols=123 Identities=15% Similarity=0.183 Sum_probs=83.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC----------------eEEEEcCCcccCCCCCCcccccc------------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK----------------RVVIVDTSNEIGGDGDIPHSAIG------------ 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------~v~~i~~~~e~~~~~~~~~~~~~------------ 79 (241)
++.|.||||||||||+++|++..+++.|. .+.|+.+...+.....+. .++.
T Consensus 47 ~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~-eNi~~~l~~~~~~~~~ 125 (377)
T PRK11607 47 IFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVE-QNIAFGLKQDKLPKAE 125 (377)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHH-HHHHHHHHHcCCCHHH
Confidence 89999999999999999999999877442 123333222111110000 0000
Q ss_pred ---ch--------------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HH-HhCCcEEEE
Q 026207 80 ---TA--------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SI-AERGVMLIG 134 (241)
Q Consensus 80 ---~~--------------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~-~~~g~~vi~ 134 (241)
+. ++...+|++++|++++++++..+|+++++|||.+.+|..... .. .+.|.++|.
T Consensus 126 ~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~ 205 (377)
T PRK11607 126 IASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVM 205 (377)
T ss_pred HHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 00 012235667899999999999999999999999999995432 22 345899999
Q ss_pred eecCCChhhhhcCCccccccccccEEEe
Q 026207 135 TAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 135 t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++|... .+..+ +|++++
T Consensus 206 vTHd~~--------ea~~l---aDri~v 222 (377)
T PRK11607 206 VTHDQE--------EAMTM---AGRIAI 222 (377)
T ss_pred EcCCHH--------HHHHh---CCEEEE
Confidence 999886 44555 777766
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.4e-15 Score=124.11 Aligned_cols=124 Identities=17% Similarity=0.240 Sum_probs=84.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC-------------eEEEEcCCcccC---CCC--------CCc---------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK-------------RVVIVDTSNEIG---GDG--------DIP--------- 74 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-------------~v~~i~~~~e~~---~~~--------~~~--------- 74 (241)
++.|+||||||||||++.+++..+++.|. ++.|+.+..... ... ...
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~ 106 (213)
T cd03235 27 FLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLS 106 (213)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccccCCCCcHHHHHHhccccccccccCCC
Confidence 89999999999999999999998876442 234444322110 000 000
Q ss_pred cccccch--------------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEE
Q 026207 75 HSAIGTA--------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLI 133 (241)
Q Consensus 75 ~~~~~~~--------------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi 133 (241)
......+ .....+|++++++..+++++..+|+++++|||++++|+.... ...+.|.++|
T Consensus 107 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi 186 (213)
T cd03235 107 KADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTIL 186 (213)
T ss_pred HHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEE
Confidence 0000000 112345678899999999999999999999999999995432 3344688999
Q ss_pred EeecCCChhhhhcCCccccccccccEEEe
Q 026207 134 GTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 134 ~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
.++|..+ .+..+ ||+++.
T Consensus 187 ~~sH~~~--------~~~~~---~d~i~~ 204 (213)
T cd03235 187 VVTHDLG--------LVLEY---FDRVLL 204 (213)
T ss_pred EEeCCHH--------HHHHh---cCEEEE
Confidence 9999986 55666 788775
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=2e-15 Score=127.13 Aligned_cols=149 Identities=15% Similarity=0.119 Sum_probs=92.7
Q ss_pred CccccceeeEEEEEeEEeeCcceeecc-EEEEEeCCCchHHHHHHHHHHhccccCCC----------------eEEEEcC
Q 026207 1 MLRLRNVFLLIVKFFYALYSINKIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK----------------RVVIVDT 63 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------~v~~i~~ 63 (241)
||+++|+..-.-.... .. ...+..| +++|+||||||||||++.+++..++..|. .+.|+.+
T Consensus 1 ~l~~~~l~~~~~~~~~-~i-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 78 (232)
T PRK10771 1 MLKLTDITWLYHHLPM-RF-DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQ 78 (232)
T ss_pred CeEEEEEEEEECCccc-ee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEec
Confidence 7888888632211010 01 1223333 89999999999999999999998876442 1333332
Q ss_pred CcccCCC-C--------CCcccc--------cc-chh----------hcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCC
Q 026207 64 SNEIGGD-G--------DIPHSA--------IG-TAR----------RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGT 115 (241)
Q Consensus 64 ~~e~~~~-~--------~~~~~~--------~~-~~~----------~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~ 115 (241)
...+... . ..+... .. ... ....+|++++++..+++++..+|+++++|||++
T Consensus 79 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~ 158 (232)
T PRK10771 79 ENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFS 158 (232)
T ss_pred ccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 2111100 0 000000 00 000 122356678999999999999999999999999
Q ss_pred HHhHHHHH-------HHH-hCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 116 EAEAHACR-------SIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 116 ~~d~~~~~-------~~~-~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++|+.... ... +.|.++|+++|... .+..+ ||+++.
T Consensus 159 gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~--------~~~~~---~d~i~~ 202 (232)
T PRK10771 159 ALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE--------DAARI---APRSLV 202 (232)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH--------HHHHh---CCEEEE
Confidence 99995432 333 34889999999987 45555 777766
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=9.7e-16 Score=132.71 Aligned_cols=123 Identities=20% Similarity=0.238 Sum_probs=81.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcc--cCCCC-----CCcccccc---
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNE--IGGDG-----DIPHSAIG--- 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e--~~~~~-----~~~~~~~~--- 79 (241)
+++|+||||||||||++.+++.+++..|. ++.|+.+... +.... .......+
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~ 114 (279)
T PRK13650 35 WLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPH 114 (279)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhCCCCH
Confidence 89999999999999999999999877543 1222221110 00000 00000000
Q ss_pred -----ch--------------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHh-CCcEE
Q 026207 80 -----TA--------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAE-RGVML 132 (241)
Q Consensus 80 -----~~--------------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~-~g~~v 132 (241)
.+ .....+|++++++..+++++..+|+++++|||++++|+.... ...+ .|.++
T Consensus 115 ~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~ti 194 (279)
T PRK13650 115 EEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTV 194 (279)
T ss_pred HHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 00 012235667899999999999999999999999999995432 3333 48999
Q ss_pred EEeecCCChhhhhcCCccccccccccEEEe
Q 026207 133 IGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 133 i~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
|+++|... .+ .. ||++++
T Consensus 195 livtH~~~--------~~-~~---~dri~~ 212 (279)
T PRK13650 195 ISITHDLD--------EV-AL---SDRVLV 212 (279)
T ss_pred EEEecCHH--------HH-Hh---CCEEEE
Confidence 99999986 33 24 777766
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.3e-15 Score=127.56 Aligned_cols=124 Identities=15% Similarity=0.206 Sum_probs=83.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCCC---------CC-cc--cc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGDG---------DI-PH--SA 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~~---------~~-~~--~~ 77 (241)
+++|.||||||||||++.|++.+++..|. .+.|+.+...+.... .. .. ..
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~ 110 (241)
T PRK14250 31 IYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVD 110 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhchhhHHHHHhcchhhcCcHHHH
Confidence 89999999999999999999998876442 123332221110000 00 00 00
Q ss_pred -------ccc-----hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHh-CCcEEEEeec
Q 026207 78 -------IGT-----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAE-RGVMLIGTAH 137 (241)
Q Consensus 78 -------~~~-----~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~-~g~~vi~t~H 137 (241)
.+. ......+|++++++..+++++..+|+++++|||++++|+.... ...+ .|.++|+++|
T Consensus 111 ~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH 190 (241)
T PRK14250 111 VEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITH 190 (241)
T ss_pred HHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 000 0112235668899999999999999999999999999995432 3333 4889999999
Q ss_pred CCChhhhhcCCccccccccccEEEe
Q 026207 138 GEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 138 ~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
... .+..+ ||+|+.
T Consensus 191 ~~~--------~~~~~---~d~i~~ 204 (241)
T PRK14250 191 NME--------QAKRI---GDYTAF 204 (241)
T ss_pred cHH--------HHHHh---CCEEEE
Confidence 886 45556 788776
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.7e-15 Score=127.12 Aligned_cols=149 Identities=14% Similarity=0.090 Sum_probs=92.3
Q ss_pred CccccceeeEEEEEeEEeeCcce--eec-cEEEEEeCCCchHHHHHHHHHHhccccCCC---------------------
Q 026207 1 MLRLRNVFLLIVKFFYALYSINK--IIF-DFFLSYFRPGVGKTTVMREIARVLSDEFQK--------------------- 56 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~~--~~~-g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~--------------------- 56 (241)
||+++|+..-.- -+.++...+ +.. .+++|.||||||||||++.|+|..++..|.
T Consensus 2 ~l~~~~l~~~~~--~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (242)
T PRK11124 2 SIQLNGINCFYG--AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE 79 (242)
T ss_pred EEEEEeeEEEEC--CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHH
Confidence 566777742110 013344332 223 389999999999999999999998876442
Q ss_pred ---eEEEEcCCcccCCCCCCcccc-c------c--------c----h----------hhcCCCCCcccHHHHHHHHHhcC
Q 026207 57 ---RVVIVDTSNEIGGDGDIPHSA-I------G--------T----A----------RRMQVPEPSLQHKVMIEAVENHM 104 (241)
Q Consensus 57 ---~v~~i~~~~e~~~~~~~~~~~-~------~--------~----~----------~~~~~~~~~~~~~~~~~~~l~~~ 104 (241)
.+.|+.+...+.....+.... . + . . .....+|++++++..+++++..+
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~ 159 (242)
T PRK11124 80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMME 159 (242)
T ss_pred HHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 122232211111000000000 0 0 0 0 01223566789999999999999
Q ss_pred CcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 105 PEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 105 p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
|+++++|||++++|+.... ...++|.++++++|... .+..+ +|++++
T Consensus 160 p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--------~~~~~---~d~i~~ 213 (242)
T PRK11124 160 PQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE--------VARKT---ASRVVY 213 (242)
T ss_pred CCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--------HHHHh---cCEEEE
Confidence 9999999999999995432 33446899999999886 44555 777766
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.3e-15 Score=132.39 Aligned_cols=128 Identities=18% Similarity=0.216 Sum_probs=84.2
Q ss_pred eecc-EEEEEeCCCchHHHHHHHHHHhccccCCC----------------------eEEEEcCCcc--cCCC------CC
Q 026207 24 IIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK----------------------RVVIVDTSNE--IGGD------GD 72 (241)
Q Consensus 24 ~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------------~v~~i~~~~e--~~~~------~~ 72 (241)
+..| ++.|.||||||||||++.|++.+++..|. ++.|+.+..+ +... ..
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~e~i~~ 109 (286)
T PRK13646 30 FEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIF 109 (286)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccchhhHHHHHHh
Confidence 3444 89999999999999999999999877542 1223222110 0000 00
Q ss_pred ------Ccc-c----------cccch-----hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------
Q 026207 73 ------IPH-S----------AIGTA-----RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR------- 123 (241)
Q Consensus 73 ------~~~-~----------~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~------- 123 (241)
... . ..+.. .....+|++++++..+++++..+|+++++|||++++|+....
T Consensus 110 ~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~ 189 (286)
T PRK13646 110 GPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLK 189 (286)
T ss_pred hHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHH
Confidence 000 0 00000 012234567799999999999999999999999999995432
Q ss_pred HHH-hCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 124 SIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 124 ~~~-~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
... +.|.++++++|..+ .+..+ ||+|+.
T Consensus 190 ~l~~~~g~tvl~vtH~~~--------~~~~~---~dri~~ 218 (286)
T PRK13646 190 SLQTDENKTIILVSHDMN--------EVARY---ADEVIV 218 (286)
T ss_pred HHHHhCCCEEEEEecCHH--------HHHHh---CCEEEE
Confidence 333 35899999999986 45555 788776
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.4e-15 Score=124.01 Aligned_cols=113 Identities=12% Similarity=0.102 Sum_probs=75.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC----------------------eEEEEcCCcccCCCCCC------------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK----------------------RVVIVDTSNEIGGDGDI------------ 73 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------------~v~~i~~~~e~~~~~~~------------ 73 (241)
+++|+||||||||||++.|++..++..|. ++.|+.+...+.....+
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~ 112 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGK 112 (221)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcC
Confidence 89999999999999999999998876442 13333322111100000
Q ss_pred -cccc-ccc----h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHH-hCC
Q 026207 74 -PHSA-IGT----A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIA-ERG 129 (241)
Q Consensus 74 -~~~~-~~~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~-~~g 129 (241)
.... ... . .....+|++++++..+++++..+|+++++|||++++|+.... ... +.|
T Consensus 113 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~ 192 (221)
T TIGR02211 113 KSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELN 192 (221)
T ss_pred CCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcC
Confidence 0000 000 0 012235667899999999999999999999999999995432 232 348
Q ss_pred cEEEEeecCCC
Q 026207 130 VMLIGTAHGEW 140 (241)
Q Consensus 130 ~~vi~t~H~~~ 140 (241)
.++|+++|..+
T Consensus 193 ~tii~~tH~~~ 203 (221)
T TIGR02211 193 TSFLVVTHDLE 203 (221)
T ss_pred CEEEEEeCCHH
Confidence 89999999875
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.9e-15 Score=125.00 Aligned_cols=123 Identities=19% Similarity=0.236 Sum_probs=81.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC-----------------eEEEEcCCcccCCCCCC-------------cccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK-----------------RVVIVDTSNEIGGDGDI-------------PHSA 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-----------------~v~~i~~~~e~~~~~~~-------------~~~~ 77 (241)
+++|+||||||||||++.+++..++..|. ++.|+.+.........+ +...
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~ 109 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSE 109 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcCCCHHH
Confidence 89999999999999999999998877442 12233211111100000 0000
Q ss_pred c-cc----h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEe
Q 026207 78 I-GT----A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGT 135 (241)
Q Consensus 78 ~-~~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t 135 (241)
. .. . .....+|.+++++..+++++..+|+++++|||++++|+.... ... .+.++|++
T Consensus 110 ~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~ 188 (220)
T cd03263 110 IKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVR-KGRSIILT 188 (220)
T ss_pred HHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHh-cCCEEEEE
Confidence 0 00 0 012235567799999999999999999999999999995432 333 35889999
Q ss_pred ecCCChhhhhcCCccccccccccEEEe
Q 026207 136 AHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 136 ~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+|... .+..+ ||++++
T Consensus 189 sH~~~--------~~~~~---~d~i~~ 204 (220)
T cd03263 189 THSMD--------EAEAL---CDRIAI 204 (220)
T ss_pred cCCHH--------HHHHh---cCEEEE
Confidence 99886 45556 788776
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.3e-15 Score=132.64 Aligned_cols=124 Identities=19% Similarity=0.246 Sum_probs=83.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC----------------------eEEEEcCCc--ccCCCC------------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK----------------------RVVIVDTSN--EIGGDG------------ 71 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------------~v~~i~~~~--e~~~~~------------ 71 (241)
+++|.||||||||||++.|++.+++..|. ++.|+.+.. .+....
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~ 114 (290)
T PRK13634 35 YVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNF 114 (290)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHc
Confidence 89999999999999999999998876442 133333211 010000
Q ss_pred CCccc-----------cccc-----hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHH-h
Q 026207 72 DIPHS-----------AIGT-----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIA-E 127 (241)
Q Consensus 72 ~~~~~-----------~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~-~ 127 (241)
..... ..+. -.....+|++++++..+++++..+|+++|+|||++++|+.... ... +
T Consensus 115 ~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~ 194 (290)
T PRK13634 115 GVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKE 194 (290)
T ss_pred CCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh
Confidence 00000 0000 0012235667899999999999999999999999999995433 332 3
Q ss_pred CCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 128 RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 128 ~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
.|.+||+++|..+ .+..+ ||+|++
T Consensus 195 ~g~tviiitHd~~--------~~~~~---~drv~~ 218 (290)
T PRK13634 195 KGLTTVLVTHSME--------DAARY---ADQIVV 218 (290)
T ss_pred cCCEEEEEeCCHH--------HHHHh---CCEEEE
Confidence 4899999999987 55566 888877
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=8e-15 Score=122.12 Aligned_cols=124 Identities=14% Similarity=0.115 Sum_probs=83.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC---------------eEEEEcCCcccCCCCCCc--------------cccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK---------------RVVIVDTSNEIGGDGDIP--------------HSAI 78 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~---------------~v~~i~~~~e~~~~~~~~--------------~~~~ 78 (241)
+++|.||||||||||++.+++..++..|. .+.|+.+...+....... ....
T Consensus 39 ~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~ 118 (214)
T PRK13543 39 ALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMP 118 (214)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHHHHHHHHHhcCCcHHHHH
Confidence 89999999999999999999998877442 133333221111100000 0000
Q ss_pred -cchh----------hcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCC
Q 026207 79 -GTAR----------RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 79 -~~~~----------~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~ 140 (241)
.... ....+|++++++..+++++..+|+++++|||++++|+.... ..++.|.++|+++|..+
T Consensus 119 ~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~ 198 (214)
T PRK13543 119 GSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY 198 (214)
T ss_pred HHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh
Confidence 0000 11235667899999999999999999999999999995432 34456889999999886
Q ss_pred hhhhhcCCccccccccccEEEe
Q 026207 141 LENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 141 ~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
.+.++ ||+++.
T Consensus 199 --------~~~~~---~~~i~~ 209 (214)
T PRK13543 199 --------AAPPV---RTRMLT 209 (214)
T ss_pred --------hhhhh---cceEEE
Confidence 55556 677654
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.3e-15 Score=138.10 Aligned_cols=146 Identities=15% Similarity=0.104 Sum_probs=93.8
Q ss_pred CccccceeeEEEEEeEEeeCcce--eecc-EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccC--------C
Q 026207 1 MLRLRNVFLLIVKFFYALYSINK--IIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIG--------G 69 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~~--~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~--------~ 69 (241)
||+++|+..-.- -+.++...+ +..| +++|+||||||||||++.+++.++++.|. +.++ +.++. .
T Consensus 3 ~l~~~~l~~~~~--~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~--i~~~-~~~~~~~~~~~~~~ 77 (490)
T PRK10938 3 SLQISQGTFRLS--DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGE--RQSQ-FSHITRLSFEQLQK 77 (490)
T ss_pred eEEEEeEEEEcC--CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCce--EEEC-CcccccCCHHHHHH
Confidence 578888863210 112444432 3333 89999999999999999999999877543 2222 11000 0
Q ss_pred C-CCCcc-------------------ccc-------cc--------------hhhcCCCCCcccHHHHHHHHHhcCCcEE
Q 026207 70 D-GDIPH-------------------SAI-------GT--------------ARRMQVPEPSLQHKVMIEAVENHMPEVI 108 (241)
Q Consensus 70 ~-~~~~~-------------------~~~-------~~--------------~~~~~~~~~~~~~~~~~~~~l~~~p~vl 108 (241)
. +.+++ ..+ .+ ......+|+|++++..+++++..+|+++
T Consensus 78 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ll 157 (490)
T PRK10938 78 LVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLL 157 (490)
T ss_pred HhceeccCcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 0 00000 000 00 0123346778899999999999999999
Q ss_pred EEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 109 IVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 109 ilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++|||++++|+.... ...+.|.++|+++|... .+.++ ||+|++
T Consensus 158 lLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~--------~~~~~---~d~v~~ 207 (490)
T PRK10938 158 ILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFD--------EIPDF---VQFAGV 207 (490)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHH--------HHHhh---CCEEEE
Confidence 999999999995432 34455889999999876 45555 676665
|
|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.6e-15 Score=117.59 Aligned_cols=119 Identities=19% Similarity=0.258 Sum_probs=84.2
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC-CCCccccccchhhcCCCCCcccHHHHHHHHHhcCC
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD-GDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMP 105 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p 105 (241)
.+++|+||||+|||||++.+++.+.+..|. ++++ +...... ........+...+ +|.+++++..++.++..+|
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~~~~G~--i~~~-~~~~~~~~~~~~~~~i~~~~q---lS~G~~~r~~l~~~l~~~~ 99 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLKPTSGE--ILID-GKDIAKLPLEELRRRIGYVPQ---LSGGQRQRVALARALLLNP 99 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCccE--EEEC-CEEcccCCHHHHHhceEEEee---CCHHHHHHHHHHHHHhcCC
Confidence 389999999999999999999999877544 5665 3332110 0000011111111 7789999999999999999
Q ss_pred cEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 106 EVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 106 ~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+++++|||++++|..... .....+.++++++|..+ .+..+ ||.++.
T Consensus 100 ~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--------~~~~~---~d~i~~ 152 (157)
T cd00267 100 DLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPE--------LAELA---ADRVIV 152 (157)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH--------HHHHh---CCEEEE
Confidence 999999999999984432 33344689999999986 44555 677654
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.7e-15 Score=123.87 Aligned_cols=124 Identities=15% Similarity=0.165 Sum_probs=82.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC-------------------eEEEEcCCcccCCCCCCc------cccc----
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK-------------------RVVIVDTSNEIGGDGDIP------HSAI---- 78 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-------------------~v~~i~~~~e~~~~~~~~------~~~~---- 78 (241)
+++|+||||||||||++.+++.+++..|. .+.|+.+...+.....+. ....
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~ 107 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAK 107 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcCchh
Confidence 89999999999999999999998876442 123332211111000000 0000
Q ss_pred ---------cch--------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEE
Q 026207 79 ---------GTA--------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIG 134 (241)
Q Consensus 79 ---------~~~--------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~ 134 (241)
... .....+|++++++..+++++..+|+++++|||++++|+.... .....|.++|+
T Consensus 108 ~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii 187 (222)
T cd03224 108 RKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILL 187 (222)
T ss_pred HHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 000 011225667899999999999999999999999999995432 33446889999
Q ss_pred eecCCChhhhhcCCccccccccccEEEe
Q 026207 135 TAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 135 t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++|... .+..+ ||++++
T Consensus 188 ~sH~~~--------~~~~~---~d~i~~ 204 (222)
T cd03224 188 VEQNAR--------FALEI---ADRAYV 204 (222)
T ss_pred EeCCHH--------HHHHh---ccEEEE
Confidence 999876 55566 788776
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.1e-15 Score=139.54 Aligned_cols=138 Identities=17% Similarity=0.209 Sum_probs=90.2
Q ss_pred CccccceeeEEEEEeEEeeCcce--eecc-EEEEEeCCCchHHHHHHHHHHhccccCCC-------eEEEEcCCcccCCC
Q 026207 1 MLRLRNVFLLIVKFFYALYSINK--IIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK-------RVVIVDTSNEIGGD 70 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~~--~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-------~v~~i~~~~e~~~~ 70 (241)
||+++|+..-. . -+.++...+ +..| +++|+||||||||||++.|++.++++.|. ++.|+.+.......
T Consensus 1 ml~i~~ls~~~-~-~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~ 78 (530)
T PRK15064 1 MLSTANITMQF-G-AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEE 78 (530)
T ss_pred CEEEEEEEEEe-C-CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCCC
Confidence 78888886311 0 123444433 3333 89999999999999999999998876443 23344322111100
Q ss_pred CCC------------------------c-----------------------c--c-------cccc---h--hhcCCCCC
Q 026207 71 GDI------------------------P-----------------------H--S-------AIGT---A--RRMQVPEP 89 (241)
Q Consensus 71 ~~~------------------------~-----------------------~--~-------~~~~---~--~~~~~~~~ 89 (241)
..+ + . . .++. . .....+|+
T Consensus 79 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSg 158 (530)
T PRK15064 79 FTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAP 158 (530)
T ss_pred CcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCH
Confidence 000 0 0 0 0000 0 12344677
Q ss_pred cccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH----HHHhCCcEEEEeecCCC
Q 026207 90 SLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR----SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 90 ~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~----~~~~~g~~vi~t~H~~~ 140 (241)
|+++++.+++++..+|+++++|||++++|+.... ...+.|.+||+++|...
T Consensus 159 Gq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~ 213 (530)
T PRK15064 159 GWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRH 213 (530)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 8999999999999999999999999999996554 23345889999999987
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.6e-15 Score=125.03 Aligned_cols=113 Identities=12% Similarity=0.130 Sum_probs=75.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC----------------------eEEEEcCCcccCCCCCCcccc-c-----c
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK----------------------RVVIVDTSNEIGGDGDIPHSA-I-----G 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------------~v~~i~~~~e~~~~~~~~~~~-~-----~ 79 (241)
+++|+||||||||||++.|++.+++..|. .+.|+.+...+.....+.... . +
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~ 116 (233)
T PRK11629 37 MMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGK 116 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcC
Confidence 89999999999999999999998766332 233443221111100000000 0 0
Q ss_pred --------c----hh----------hcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHH-hCC
Q 026207 80 --------T----AR----------RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIA-ERG 129 (241)
Q Consensus 80 --------~----~~----------~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~-~~g 129 (241)
. .. ....+|++++++..+++++..+|+++++|||++++|+.... ... ..|
T Consensus 117 ~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g 196 (233)
T PRK11629 117 KKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQG 196 (233)
T ss_pred CCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 0 00 11235567899999999999999999999999999995432 333 358
Q ss_pred cEEEEeecCCC
Q 026207 130 VMLIGTAHGEW 140 (241)
Q Consensus 130 ~~vi~t~H~~~ 140 (241)
.++|+++|..+
T Consensus 197 ~tvii~sH~~~ 207 (233)
T PRK11629 197 TAFLVVTHDLQ 207 (233)
T ss_pred CEEEEEeCCHH
Confidence 99999999886
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.5e-15 Score=124.07 Aligned_cols=113 Identities=19% Similarity=0.149 Sum_probs=75.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC----------------------eEEEEcCCcccCCCCCC------------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK----------------------RVVIVDTSNEIGGDGDI------------ 73 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------------~v~~i~~~~e~~~~~~~------------ 73 (241)
+++|+||||||||||++.|++..++..|. .+.|+.+...+.....+
T Consensus 38 ~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~ 117 (228)
T PRK10584 38 TIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRG 117 (228)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcC
Confidence 89999999999999999999998776432 23333221111100000
Q ss_pred -ccc----c-------ccc----hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHH-hCC
Q 026207 74 -PHS----A-------IGT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIA-ERG 129 (241)
Q Consensus 74 -~~~----~-------~~~----~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~-~~g 129 (241)
... . .+. ......+|++++++..+++++..+|+++++|||++++|+.... +.. +.|
T Consensus 118 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 197 (228)
T PRK10584 118 ESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHG 197 (228)
T ss_pred CCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC
Confidence 000 0 000 0012235667899999999999999999999999999984332 332 348
Q ss_pred cEEEEeecCCC
Q 026207 130 VMLIGTAHGEW 140 (241)
Q Consensus 130 ~~vi~t~H~~~ 140 (241)
.++|+++|...
T Consensus 198 ~tii~~sH~~~ 208 (228)
T PRK10584 198 TTLILVTHDLQ 208 (228)
T ss_pred CEEEEEecCHH
Confidence 89999999985
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=4e-15 Score=127.11 Aligned_cols=148 Identities=15% Similarity=0.146 Sum_probs=94.3
Q ss_pred CccccceeeEEEEEe-EEeeCcce--eecc-EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eE
Q 026207 1 MLRLRNVFLLIVKFF-YALYSINK--IIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RV 58 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~-~~~~~~~~--~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v 58 (241)
||+++|+.. ++- +.++..++ +..| +++|+||||||||||++.+++.+++..|. .+
T Consensus 2 ~l~~~~l~~---~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 78 (255)
T PRK11231 2 TLRTENLTV---GYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRL 78 (255)
T ss_pred EEEEEeEEE---EECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhhe
Confidence 677888753 211 12344332 3333 89999999999999999999998776442 13
Q ss_pred EEEcCCcccCCC-C------CC-----------ccccccc----h----------hhcCCCCCcccHHHHHHHHHhcCCc
Q 026207 59 VIVDTSNEIGGD-G------DI-----------PHSAIGT----A----------RRMQVPEPSLQHKVMIEAVENHMPE 106 (241)
Q Consensus 59 ~~i~~~~e~~~~-~------~~-----------~~~~~~~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~ 106 (241)
.|+.+...+... . .. ....... . .....+|+|++++..+++++..+|+
T Consensus 79 ~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 158 (255)
T PRK11231 79 ALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTP 158 (255)
T ss_pred EEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 333322111100 0 00 0000000 0 0122356688999999999999999
Q ss_pred EEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 107 VIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 107 vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++++|||++++|+.... .....|.++|+++|... .+..+ ||++++
T Consensus 159 llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~--------~~~~~---~d~i~~ 210 (255)
T PRK11231 159 VVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN--------QASRY---CDHLVV 210 (255)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH--------HHHHh---cCEEEE
Confidence 99999999999995432 33345889999999886 45556 777766
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.60 E-value=7e-15 Score=123.08 Aligned_cols=124 Identities=16% Similarity=0.221 Sum_probs=83.1
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC--------------eEEEEcCCcccCCCCCCccc------ccc----c---
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK--------------RVVIVDTSNEIGGDGDIPHS------AIG----T--- 80 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~--------------~v~~i~~~~e~~~~~~~~~~------~~~----~--- 80 (241)
+++|.||||||||||++.+++.+++..|. .+.|+.+.........+... ..+ .
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~ 107 (223)
T TIGR03740 28 VYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDE 107 (223)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCCccccCCHHHHHHHHHHHcCCCHHHHHH
Confidence 89999999999999999999998877542 12333322111110000000 000 0
Q ss_pred -hh----------hcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChh
Q 026207 81 -AR----------RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLE 142 (241)
Q Consensus 81 -~~----------~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~ 142 (241)
.. ....+|++++++..+++++..+|+++++|||++++|+.... ...+.|.++|+++|..+
T Consensus 108 ~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~-- 185 (223)
T TIGR03740 108 VLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILS-- 185 (223)
T ss_pred HHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH--
Confidence 00 12235667899999999999999999999999999995432 33445889999999876
Q ss_pred hhhcCCccccccccccEEEe
Q 026207 143 NIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 143 ~~~~~p~l~~l~~~~d~V~~ 162 (241)
.+..+ ||+++.
T Consensus 186 ------~~~~~---~d~i~~ 196 (223)
T TIGR03740 186 ------EVQQL---ADHIGI 196 (223)
T ss_pred ------HHHHh---cCEEEE
Confidence 44555 787766
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.3e-15 Score=121.16 Aligned_cols=121 Identities=17% Similarity=0.105 Sum_probs=82.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc--cccCCCeEEEEcCCcccCC--------C--CCCccccc-------cc-hhhc-CC
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL--SDEFQKRVVIVDTSNEIGG--------D--GDIPHSAI-------GT-ARRM-QV 86 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l--~~~~g~~v~~i~~~~e~~~--------~--~~~~~~~~-------~~-~~~~-~~ 86 (241)
+++|.||||||||||++.+++.. .+..|. ++++ +.++.. . ...++... .. .... ..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~--i~~~-g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~~~~~~ 104 (200)
T cd03217 28 VHALMGPNGSGKSTLAKTIMGHPKYEVTEGE--ILFK-GEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRYVNEG 104 (200)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCCccE--EEEC-CEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHhhcccc
Confidence 89999999999999999999984 455443 4443 222110 0 01111100 00 0122 35
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCcccc-cccccc
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSD-LIGGVD 158 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~-l~~~~d 158 (241)
+|++++++..+++++..+|+++++|||++++|+.... ...+.|.++++++|..+ .+.+ + +|
T Consensus 105 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~--------~~~~~~---~d 173 (200)
T cd03217 105 FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQR--------LLDYIK---PD 173 (200)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH--------HHHHhh---CC
Confidence 6778999999999999999999999999999984332 33445889999999875 3344 4 67
Q ss_pred EEEe
Q 026207 159 TVTL 162 (241)
Q Consensus 159 ~V~~ 162 (241)
+++.
T Consensus 174 ~i~~ 177 (200)
T cd03217 174 RVHV 177 (200)
T ss_pred EEEE
Confidence 7665
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.4e-15 Score=139.50 Aligned_cols=149 Identities=12% Similarity=0.067 Sum_probs=93.2
Q ss_pred CccccceeeEEEEEeEEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCC-------------------eE
Q 026207 1 MLRLRNVFLLIVKFFYALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK-------------------RV 58 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-------------------~v 58 (241)
||+++|+..-.- -+.++... .+..| +++|+||||||||||++.|++.++++.|. .+
T Consensus 5 ~l~~~~l~~~~~--~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 82 (510)
T PRK09700 5 YISMAGIGKSFG--PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGI 82 (510)
T ss_pred eEEEeeeEEEcC--CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCe
Confidence 567777752110 11234433 23344 89999999999999999999998776432 13
Q ss_pred EEEcCCcccCCC-C-----CCc--------c------cc-ccc--------------hhhcCCCCCcccHHHHHHHHHhc
Q 026207 59 VIVDTSNEIGGD-G-----DIP--------H------SA-IGT--------------ARRMQVPEPSLQHKVMIEAVENH 103 (241)
Q Consensus 59 ~~i~~~~e~~~~-~-----~~~--------~------~~-~~~--------------~~~~~~~~~~~~~~~~~~~~l~~ 103 (241)
.|+.+...+... . ... . .. ... ......+|+|++|++.+++++..
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~ 162 (510)
T PRK09700 83 GIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLML 162 (510)
T ss_pred EEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhc
Confidence 333321111000 0 000 0 00 000 01123356788999999999999
Q ss_pred CCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 104 MPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 104 ~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+|+++++|||++++|+.... +..+.|.++|+++|... .+..+ ||+|++
T Consensus 163 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~--------~~~~~---~d~v~~ 217 (510)
T PRK09700 163 DAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA--------EIRRI---CDRYTV 217 (510)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--------HHHHh---CCEEEE
Confidence 99999999999999995432 34456899999999876 44455 666655
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.8e-15 Score=138.87 Aligned_cols=149 Identities=16% Similarity=0.118 Sum_probs=93.9
Q ss_pred CccccceeeEEEEEeEEeeCcce--eecc-EEEEEeCCCchHHHHHHHHHHhccccCCC-------------------eE
Q 026207 1 MLRLRNVFLLIVKFFYALYSINK--IIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK-------------------RV 58 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~~--~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-------------------~v 58 (241)
||+++|+..-.- -..++...+ +..| +++|+||||||||||++.+++.++++.|. .+
T Consensus 4 ~i~~~~l~~~~~--~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 81 (501)
T PRK10762 4 LLQLKGIDKAFP--GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI 81 (501)
T ss_pred eEEEeeeEEEeC--CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 677777753210 112344332 3333 89999999999999999999999876442 12
Q ss_pred EEEcCCcccCCC-C------C--Ccc---ccc------cc----h----------hhcCCCCCcccHHHHHHHHHhcCCc
Q 026207 59 VIVDTSNEIGGD-G------D--IPH---SAI------GT----A----------RRMQVPEPSLQHKVMIEAVENHMPE 106 (241)
Q Consensus 59 ~~i~~~~e~~~~-~------~--~~~---~~~------~~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~ 106 (241)
.|+.+....... . . ... ... .. . .....+|+|++++..+++++..+|+
T Consensus 82 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ 161 (501)
T PRK10762 82 GIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESK 161 (501)
T ss_pred EEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 333221111000 0 0 000 000 00 0 0123356688999999999999999
Q ss_pred EEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 107 VIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 107 vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++++|||++++|+.... ...+.|.++|+++|..+ .+.++ ||+|++
T Consensus 162 lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~--------~~~~~---~d~i~~ 213 (501)
T PRK10762 162 VIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK--------EIFEI---CDDVTV 213 (501)
T ss_pred EEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH--------HHHHh---CCEEEE
Confidence 99999999999995432 34456889999999886 55556 777766
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.1e-15 Score=124.39 Aligned_cols=65 Identities=20% Similarity=0.309 Sum_probs=53.1
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|+|++++..+++++..+|+++++|||++++|+.... ...+.|.++|+++|..+ .+..+ ||+
T Consensus 144 LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~--------~~~~~---~d~ 212 (236)
T cd03219 144 LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD--------VVMSL---ADR 212 (236)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH--------HHHHh---CCE
Confidence 5667899999999999999999999999999995332 33446889999999886 55566 888
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
++.
T Consensus 213 i~~ 215 (236)
T cd03219 213 VTV 215 (236)
T ss_pred EEE
Confidence 776
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.7e-15 Score=122.14 Aligned_cols=127 Identities=17% Similarity=0.163 Sum_probs=83.8
Q ss_pred eeeccEEEEEeCCCchHHHHHHHHHHhccccCCC-----------------eEEEEcCCcccCCCCCCcccccc------
Q 026207 23 KIIFDFFLSYFRPGVGKTTVMREIARVLSDEFQK-----------------RVVIVDTSNEIGGDGDIPHSAIG------ 79 (241)
Q Consensus 23 ~~~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-----------------~v~~i~~~~e~~~~~~~~~~~~~------ 79 (241)
.+..|+++|.||||||||||++.+++.+++..|. .+.|+.+.........+. ..+.
T Consensus 22 ~i~~g~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~-~~l~~~~~~~ 100 (211)
T cd03264 22 TLGPGMYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVR-EFLDYIAWLK 100 (211)
T ss_pred EEcCCcEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCcccccCCHH-HHHHHHHHHh
Confidence 3445699999999999999999999998876442 122332111111000000 0000
Q ss_pred ---------c----h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCC
Q 026207 80 ---------T----A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERG 129 (241)
Q Consensus 80 ---------~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g 129 (241)
. . .....+|++++++..+++++..+|+++++|||++++|+.... .... +
T Consensus 101 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~ 179 (211)
T cd03264 101 GIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-D 179 (211)
T ss_pred CCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-C
Confidence 0 0 012235667899999999999999999999999999995432 3333 5
Q ss_pred cEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 130 VMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 130 ~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
.++|+++|... .+.++ +|+++.
T Consensus 180 ~tii~vsH~~~--------~~~~~---~d~i~~ 201 (211)
T cd03264 180 RIVILSTHIVE--------DVESL---CNQVAV 201 (211)
T ss_pred CEEEEEcCCHH--------HHHHh---CCEEEE
Confidence 88999999886 45556 787776
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.2e-15 Score=122.61 Aligned_cols=125 Identities=14% Similarity=0.139 Sum_probs=83.5
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCC----------------eEEEEcCCcccCCCCCC---------cc------
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQK----------------RVVIVDTSNEIGGDGDI---------PH------ 75 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------~v~~i~~~~e~~~~~~~---------~~------ 75 (241)
.+++|.||||||||||++.+++.+++..|. .+.|+.+...+...... +.
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~ 104 (213)
T TIGR01277 25 EIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAE 104 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhHhhccCCccHH
Confidence 389999999999999999999999877442 12333322111110000 00
Q ss_pred --cccc-ch----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHh-CCcEEEE
Q 026207 76 --SAIG-TA----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAE-RGVMLIG 134 (241)
Q Consensus 76 --~~~~-~~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~-~g~~vi~ 134 (241)
.... .. .....+|.+++++..+++++..+|+++++|||++++|+.... ...+ .|.++|+
T Consensus 105 ~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~ 184 (213)
T TIGR01277 105 QQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLM 184 (213)
T ss_pred HHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 0000 00 012235667899999999999999999999999999995433 3333 4889999
Q ss_pred eecCCChhhhhcCCccccccccccEEEe
Q 026207 135 TAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 135 t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++|... .+.++ ||+++.
T Consensus 185 vsh~~~--------~~~~~---~d~v~~ 201 (213)
T TIGR01277 185 VTHHLS--------DARAI---ASQIAV 201 (213)
T ss_pred EeCCHH--------HHHhh---cCeEEE
Confidence 999986 45556 788776
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.8e-15 Score=128.01 Aligned_cols=124 Identities=13% Similarity=0.116 Sum_probs=81.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC---------------------eEEEEcCCcc--cCCCCC------------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK---------------------RVVIVDTSNE--IGGDGD------------ 72 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~---------------------~v~~i~~~~e--~~~~~~------------ 72 (241)
+++|.||||||||||++.|++.+++..|. .+.|+.+... +.....
T Consensus 39 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~ 118 (265)
T TIGR02769 39 TVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHL 118 (265)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHh
Confidence 89999999999999999999998876442 1333332110 100000
Q ss_pred --Ccc-cc----ccchh-----------hcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHh
Q 026207 73 --IPH-SA----IGTAR-----------RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAE 127 (241)
Q Consensus 73 --~~~-~~----~~~~~-----------~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~ 127 (241)
... .. ..... ....+|++++++..+++++..+|+++++|||++++|+.... ...+
T Consensus 119 ~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~ 198 (265)
T TIGR02769 119 TSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQ 198 (265)
T ss_pred cCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 000 00 00000 11224557799999999999999999999999999995332 3333
Q ss_pred -CCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 128 -RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 128 -~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
.|.++|+++|..+ .+..+ ||++++
T Consensus 199 ~~g~tiiivsH~~~--------~~~~~---~d~i~~ 223 (265)
T TIGR02769 199 AFGTAYLFITHDLR--------LVQSF---CQRVAV 223 (265)
T ss_pred hcCcEEEEEeCCHH--------HHHHH---hcEEEE
Confidence 4889999999886 44555 777776
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.5e-15 Score=131.10 Aligned_cols=124 Identities=16% Similarity=0.128 Sum_probs=83.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC----------------eEEEEcCCcccCCCCCC------cccc------cc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK----------------RVVIVDTSNEIGGDGDI------PHSA------IG 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------~v~~i~~~~e~~~~~~~------~~~~------~~ 79 (241)
++.|.||||||||||+++|++..+++.|. ++.|+.+...+.....+ +... ..
T Consensus 30 ~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~ 109 (353)
T PRK10851 30 MVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPN 109 (353)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCC
Confidence 89999999999999999999999877442 22333322111110000 0000 00
Q ss_pred ------c----h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHH-hCCcE
Q 026207 80 ------T----A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIA-ERGVM 131 (241)
Q Consensus 80 ------~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~-~~g~~ 131 (241)
. . .....+|++++|++.+++++..+|+++++|||++++|+.... +.. +.|.+
T Consensus 110 ~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~t 189 (353)
T PRK10851 110 AAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFT 189 (353)
T ss_pred HHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 0 0 012235667899999999999999999999999999994432 333 34899
Q ss_pred EEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 132 LIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 132 vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+|.++|... .+..+ ||+|++
T Consensus 190 ii~vTHd~~--------ea~~~---~Dri~v 209 (353)
T PRK10851 190 SVFVTHDQE--------EAMEV---ADRVVV 209 (353)
T ss_pred EEEEeCCHH--------HHHHh---CCEEEE
Confidence 999999986 55566 787776
|
|
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.4e-15 Score=126.41 Aligned_cols=125 Identities=16% Similarity=0.167 Sum_probs=86.0
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCC------eEEEEcCCcccCCCCCCcc----------c--c--------ccc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQK------RVVIVDTSNEIGGDGDIPH----------S--A--------IGT 80 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------~v~~i~~~~e~~~~~~~~~----------~--~--------~~~ 80 (241)
.+++|+||||||||||++.|++.+++..|. ++.|+.+.........+.. . . ++.
T Consensus 26 e~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l 105 (246)
T cd03237 26 EVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQI 105 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcCC
Confidence 489999999999999999999999877442 4455543221111000000 0 0 000
Q ss_pred ----hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHH-hCCcEEEEeecCCChhhhhcCC
Q 026207 81 ----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIA-ERGVMLIGTAHGEWLENIIKNP 148 (241)
Q Consensus 81 ----~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~-~~g~~vi~t~H~~~~~~~~~~p 148 (241)
......+|++++++..+++++..+|+++++|||++.+|+.... ... +.|.++|+++|...
T Consensus 106 ~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~-------- 177 (246)
T cd03237 106 EQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDII-------- 177 (246)
T ss_pred HHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--------
Confidence 0122346778899999999999999999999999999995432 322 34899999999986
Q ss_pred ccccccccccEEEe
Q 026207 149 ILSDLIGGVDTVTL 162 (241)
Q Consensus 149 ~l~~l~~~~d~V~~ 162 (241)
.+..+ ||+|++
T Consensus 178 ~~~~~---~d~i~~ 188 (246)
T cd03237 178 MIDYL---ADRLIV 188 (246)
T ss_pred HHHHh---CCEEEE
Confidence 45556 787776
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.9e-15 Score=124.98 Aligned_cols=148 Identities=14% Similarity=0.076 Sum_probs=92.4
Q ss_pred CccccceeeEEEEEeEEeeCcce--eec-cEEEEEeCCCchHHHHHHHHHHhccccCCC-------------------eE
Q 026207 1 MLRLRNVFLLIVKFFYALYSINK--IIF-DFFLSYFRPGVGKTTVMREIARVLSDEFQK-------------------RV 58 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~~--~~~-g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-------------------~v 58 (241)
||+++|+..-.-. +.++...+ +.. .+++|.||||||||||++.|++.+++..|. .+
T Consensus 2 ~i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 2 ILYLEGLSVSFDG--FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred eEEEEeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 6777888532110 12344332 223 389999999999999999999998776442 12
Q ss_pred EEEcCCcccCCCCCCcc---------------------c-cccc----h----------hhcCCCCCcccHHHHHHHHHh
Q 026207 59 VIVDTSNEIGGDGDIPH---------------------S-AIGT----A----------RRMQVPEPSLQHKVMIEAVEN 102 (241)
Q Consensus 59 ~~i~~~~e~~~~~~~~~---------------------~-~~~~----~----------~~~~~~~~~~~~~~~~~~~l~ 102 (241)
.|+.+...+.....+.. . .... . .....+|++++++..+++++.
T Consensus 80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~ 159 (242)
T TIGR03411 80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLM 159 (242)
T ss_pred eEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHh
Confidence 23321111110000000 0 0000 0 012235667899999999999
Q ss_pred cCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 103 HMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 103 ~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
.+|+++++|||++++|+.... ... .+.++|+++|..+ .+.++ ||+++.
T Consensus 160 ~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~-~~~tii~~sH~~~--------~~~~~---~d~i~~ 214 (242)
T TIGR03411 160 QDPKLLLLDEPVAGMTDEETEKTAELLKSLA-GKHSVVVVEHDME--------FVRSI---ADKVTV 214 (242)
T ss_pred cCCCEEEecCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEECCHH--------HHHHh---CCEEEE
Confidence 999999999999999995433 222 3689999999886 55566 788776
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13900 type IV secretion system ATPase VirB11; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-14 Score=128.59 Aligned_cols=117 Identities=21% Similarity=0.183 Sum_probs=89.4
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCC
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMP 105 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p 105 (241)
.+.++|+|++||||||++++++..++++ .+++++++..|+..... +........+.........+...+..+++++|
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~ip~~--~ri~tiEd~~El~l~~~-~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~P 236 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREIPAI--ERLITVEDAREIVLSNH-PNRVHLLASKGGQGRAKVTTQDLIEACLRLRP 236 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhhCCCC--CeEEEecCCCccccccC-CCEEEEEecCCCCCcCcCcHHHHHHHHhccCC
Confidence 5589999999999999999999999876 79999998888854211 11110000111112235678899999999999
Q ss_pred cEEEEcCCCCHHhHHHHHHHHhCCcE-EEEeecCCChhhhhc
Q 026207 106 EVIIVDEIGTEAEAHACRSIAERGVM-LIGTAHGEWLENIIK 146 (241)
Q Consensus 106 ~vlilDE~~~~~d~~~~~~~~~~g~~-vi~t~H~~~~~~~~~ 146 (241)
|+|+++|+++.+ +..+.++.++||. +++|+|++++.+++.
T Consensus 237 D~IivGEiR~~e-a~~~l~a~~tGh~G~~tTiHa~s~~~ai~ 277 (332)
T PRK13900 237 DRIIVGELRGAE-AFSFLRAINTGHPGSISTLHADSPAMAIE 277 (332)
T ss_pred CeEEEEecCCHH-HHHHHHHHHcCCCcEEEEEecCCHHHHHH
Confidence 999999999875 4556778899997 999999999877764
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.6e-15 Score=126.72 Aligned_cols=148 Identities=18% Similarity=0.163 Sum_probs=93.1
Q ss_pred CccccceeeEEEEEeEEeeCcce--eec-cEEEEEeCCCchHHHHHHHHHHhccc----cCCC----------------e
Q 026207 1 MLRLRNVFLLIVKFFYALYSINK--IIF-DFFLSYFRPGVGKTTVMREIARVLSD----EFQK----------------R 57 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~~--~~~-g~vll~Gp~GsGKTTLl~~l~~~l~~----~~g~----------------~ 57 (241)
||+++|+..-. -..++...+ +.. .+++|+||||||||||++.|++..++ +.|. .
T Consensus 4 ~l~~~~l~~~~---~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 80 (254)
T PRK10418 4 QIELRNIALQA---AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRK 80 (254)
T ss_pred EEEEeCeEEEe---ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccce
Confidence 56778886322 123444433 233 38999999999999999999999877 4332 2
Q ss_pred EEEEcCCcc--cCCCCCCccc------cccc----------hh-------------hcCCCCCcccHHHHHHHHHhcCCc
Q 026207 58 VVIVDTSNE--IGGDGDIPHS------AIGT----------AR-------------RMQVPEPSLQHKVMIEAVENHMPE 106 (241)
Q Consensus 58 v~~i~~~~e--~~~~~~~~~~------~~~~----------~~-------------~~~~~~~~~~~~~~~~~~l~~~p~ 106 (241)
+.|+.+... +.....+... ..+. .. ....+|++++++..+++++..+|+
T Consensus 81 i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~ 160 (254)
T PRK10418 81 IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAP 160 (254)
T ss_pred EEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCC
Confidence 334432211 0000000000 0000 00 112356688999999999999999
Q ss_pred EEEEcCCCCHHhHHHHH-------HHH-hCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 107 VIIVDEIGTEAEAHACR-------SIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 107 vlilDE~~~~~d~~~~~-------~~~-~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++|+|||++++|+.... ... +.|.++++++|... .+..+ ||++++
T Consensus 161 lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~--------~~~~~---~d~v~~ 213 (254)
T PRK10418 161 FIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG--------VVARL---ADDVAV 213 (254)
T ss_pred EEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH--------HHHHh---CCEEEE
Confidence 99999999999985432 332 34889999999876 44555 787766
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.5e-15 Score=131.95 Aligned_cols=66 Identities=15% Similarity=0.237 Sum_probs=52.9
Q ss_pred CCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHH-hCCcEEEEeecCCChhhhhcCCccccccccc
Q 026207 86 VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGV 157 (241)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~-~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~ 157 (241)
.+|++++|+..+++++..+|++||+|||++++|..... ... +.|.++|+++|... .+.++ |
T Consensus 154 ~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~--------~~~~~---a 222 (327)
T PRK11308 154 MFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS--------VVEHI---A 222 (327)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--------HHHHh---C
Confidence 35668899999999999999999999999999984332 333 34899999999987 55556 7
Q ss_pred cEEEe
Q 026207 158 DTVTL 162 (241)
Q Consensus 158 d~V~~ 162 (241)
|+|++
T Consensus 223 drv~v 227 (327)
T PRK11308 223 DEVMV 227 (327)
T ss_pred CEEEE
Confidence 77665
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.3e-14 Score=119.72 Aligned_cols=113 Identities=18% Similarity=0.157 Sum_probs=74.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC-----------------eEEEEcCCcccCCCCCC------c--cc---ccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK-----------------RVVIVDTSNEIGGDGDI------P--HS---AIG 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-----------------~v~~i~~~~e~~~~~~~------~--~~---~~~ 79 (241)
++.|.||||||||||++.+++.+++..|. .+.|+.+...+.....+ . .. ...
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~ 107 (201)
T cd03231 28 ALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVE 107 (201)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEeccccccCCCcCHHHHHHhhcccccHHHHH
Confidence 89999999999999999999998877442 11222211111000000 0 00 000
Q ss_pred c-h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCC
Q 026207 80 T-A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 80 ~-~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~ 140 (241)
. . .....+|++++++..+++++..+|+++++|||++++|+.... ...+.|.++|+++|...
T Consensus 108 ~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~ 186 (201)
T cd03231 108 EALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDL 186 (201)
T ss_pred HHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence 0 0 012235667899999999999999999999999999995432 33445889999999764
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-14 Score=125.58 Aligned_cols=137 Identities=14% Similarity=0.140 Sum_probs=86.7
Q ss_pred CccccceeeEEEEEe--EEeeCcce--eecc-EEEEEeCCCchHHHHHHHHHHhccccCCC---------------eEEE
Q 026207 1 MLRLRNVFLLIVKFF--YALYSINK--IIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK---------------RVVI 60 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~--~~~~~~~~--~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~---------------~v~~ 60 (241)
||+++|+.. ++. +.++...+ +..| +++|+||||||||||++.|++.+++..|. .+.|
T Consensus 6 ~l~~~~l~~---~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~ 82 (272)
T PRK15056 6 GIVVNDVTV---TWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAY 82 (272)
T ss_pred eEEEEeEEE---EecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEE
Confidence 456677752 221 22343332 3333 89999999999999999999998876432 2445
Q ss_pred EcCCcccC------CCCCC-------------ccc----cccc-h----------hhcCCCCCcccHHHHHHHHHhcCCc
Q 026207 61 VDTSNEIG------GDGDI-------------PHS----AIGT-A----------RRMQVPEPSLQHKVMIEAVENHMPE 106 (241)
Q Consensus 61 i~~~~e~~------~~~~~-------------~~~----~~~~-~----------~~~~~~~~~~~~~~~~~~~l~~~p~ 106 (241)
+.+..... ..... +.. .... . .....+|++++++..+++++..+|+
T Consensus 83 v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~ 162 (272)
T PRK15056 83 VPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQ 162 (272)
T ss_pred eccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 54221110 00000 000 0000 0 0123356678999999999999999
Q ss_pred EEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCC
Q 026207 107 VIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 107 vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~ 140 (241)
++++|||++++|+.... ..+..|.++|+++|..+
T Consensus 163 llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~ 203 (272)
T PRK15056 163 VILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG 203 (272)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 99999999999995332 33445889999999876
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.4e-15 Score=123.54 Aligned_cols=65 Identities=22% Similarity=0.286 Sum_probs=52.7
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHH-hCCcEEEEeecCCChhhhhcCCcccccccccc
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVD 158 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~-~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d 158 (241)
+|++++++..+++++..+|+++++|||++++|+.... ... +.|.++|+++|..+ .+..+ ||
T Consensus 145 LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~--------~~~~~---~d 213 (241)
T cd03256 145 LSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD--------LAREY---AD 213 (241)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--------HHHHh---CC
Confidence 5667899999999999999999999999999995432 333 34889999999886 55556 78
Q ss_pred EEEe
Q 026207 159 TVTL 162 (241)
Q Consensus 159 ~V~~ 162 (241)
++++
T Consensus 214 ~v~~ 217 (241)
T cd03256 214 RIVG 217 (241)
T ss_pred EEEE
Confidence 8776
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.9e-15 Score=123.43 Aligned_cols=148 Identities=18% Similarity=0.208 Sum_probs=90.3
Q ss_pred CccccceeeEEEEEeEEeeCcce--eecc-EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEE
Q 026207 1 MLRLRNVFLLIVKFFYALYSINK--IIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVV 59 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~~--~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~ 59 (241)
||+++|+..-.- -+.++...+ +..| +++|+||||||||||++.|++..++..|. ++.
T Consensus 7 ~i~~~~l~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (225)
T PRK10247 7 LLQLQNVGYLAG--DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84 (225)
T ss_pred eEEEeccEEeeC--CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence 566777752110 112333332 2223 89999999999999999999998776442 122
Q ss_pred EEcCCcccCCCC------C----Cc-c---ccc-cch-----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCC
Q 026207 60 IVDTSNEIGGDG------D----IP-H---SAI-GTA-----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEI 113 (241)
Q Consensus 60 ~i~~~~e~~~~~------~----~~-~---~~~-~~~-----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~ 113 (241)
|+.+...+.... . .. . ... ... .....+|.+++++..+++++..+|+++++|||
T Consensus 85 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 164 (225)
T PRK10247 85 YCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEI 164 (225)
T ss_pred EEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 222111110000 0 00 0 000 000 01222455779999999999999999999999
Q ss_pred CCHHhHHHHH-------HHH-hCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 114 GTEAEAHACR-------SIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 114 ~~~~d~~~~~-------~~~-~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++++|+.... ... +.|.++|+++|... .+. . ||+++.
T Consensus 165 t~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~--------~~~-~---~d~i~~ 209 (225)
T PRK10247 165 TSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKD--------EIN-H---ADKVIT 209 (225)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChH--------HHH-h---CCEEEE
Confidence 9999995433 332 34889999999986 342 4 788776
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.5e-15 Score=127.28 Aligned_cols=149 Identities=17% Similarity=0.179 Sum_probs=93.4
Q ss_pred CccccceeeEEEEEeEEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCC--------------------e
Q 026207 1 MLRLRNVFLLIVKFFYALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK--------------------R 57 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~--------------------~ 57 (241)
||+++|+..-.-. ...++..+ .+..| +++|.||||||||||++.+++.+++..|. .
T Consensus 1 ~l~~~~l~~~~~~-~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 1 ILETRDLKYSYPD-GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred CEEEEEEEEEeCC-CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 7888888632110 01133332 23333 89999999999999999999998876442 1
Q ss_pred EEEEcCCcc--cCCCCCCccc-ccc-------------c----hh----------hcCCCCCcccHHHHHHHHHhcCCcE
Q 026207 58 VVIVDTSNE--IGGDGDIPHS-AIG-------------T----AR----------RMQVPEPSLQHKVMIEAVENHMPEV 107 (241)
Q Consensus 58 v~~i~~~~e--~~~~~~~~~~-~~~-------------~----~~----------~~~~~~~~~~~~~~~~~~l~~~p~v 107 (241)
+.|+.+... +.... +... ..+ . .. ....+|++++++..+++++..+|++
T Consensus 80 i~~v~q~~~~~~~~~t-v~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~l 158 (275)
T PRK13639 80 VGIVFQNPDDQLFAPT-VEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEI 158 (275)
T ss_pred eEEEeeChhhhhcccc-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 223322110 00000 0000 000 0 00 1123456779999999999999999
Q ss_pred EEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 108 IIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 108 lilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+++|||++++|+.... ...+.|.+++.++|... .+..+ ||++++
T Consensus 159 lllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~--------~~~~~---~d~i~~ 209 (275)
T PRK13639 159 IVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD--------LVPVY---ADKVYV 209 (275)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH--------HHHHh---CCEEEE
Confidence 9999999999995432 33345899999999986 45555 787766
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.7e-15 Score=127.53 Aligned_cols=65 Identities=12% Similarity=0.160 Sum_probs=52.4
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHh-CCcEEEEeecCCChhhhhcCCcccccccccc
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVD 158 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~-~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d 158 (241)
+|+|++++..+++++..+|+++++|||++++|+.... ...+ .|.++|+++|... .+.++ ||
T Consensus 152 LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~--------~~~~~---~d 220 (258)
T PRK11701 152 FSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA--------VARLL---AH 220 (258)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH--------HHHHh---cC
Confidence 5567899999999999999999999999999995432 3333 4889999999987 55556 78
Q ss_pred EEEe
Q 026207 159 TVTL 162 (241)
Q Consensus 159 ~V~~ 162 (241)
++++
T Consensus 221 ~i~~ 224 (258)
T PRK11701 221 RLLV 224 (258)
T ss_pred EEEE
Confidence 8776
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.4e-15 Score=126.22 Aligned_cols=124 Identities=16% Similarity=0.237 Sum_probs=82.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCC-C------C--Ccc-----
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGD-G------D--IPH----- 75 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~-~------~--~~~----- 75 (241)
+++|+||||||||||++.|++.+++..|. .+.|+.+...+... . . .+.
T Consensus 35 ~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~ 114 (265)
T PRK10253 35 FTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFT 114 (265)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCccccccccc
Confidence 89999999999999999999998876442 12333221111100 0 0 000
Q ss_pred ---c-cccc----h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHh-CC
Q 026207 76 ---S-AIGT----A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAE-RG 129 (241)
Q Consensus 76 ---~-~~~~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~-~g 129 (241)
. .... . .....+|+|++++..+++++..+|+++++|||++++|+.... ...+ .|
T Consensus 115 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~ 194 (265)
T PRK10253 115 RWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKG 194 (265)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcC
Confidence 0 0000 0 112335667899999999999999999999999999995432 3333 48
Q ss_pred cEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 130 VMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 130 ~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
.++|+++|... .+..+ ||+++.
T Consensus 195 ~tiii~tH~~~--------~~~~~---~d~i~~ 216 (265)
T PRK10253 195 YTLAAVLHDLN--------QACRY---ASHLIA 216 (265)
T ss_pred CEEEEEeCCHH--------HHHHh---CCEEEE
Confidence 89999999986 45566 787766
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=3e-15 Score=128.93 Aligned_cols=113 Identities=17% Similarity=0.171 Sum_probs=74.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcc-cCCCCCC-------------cc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNE-IGGDGDI-------------PH 75 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e-~~~~~~~-------------~~ 75 (241)
+++|.||||||||||++.|++.+++..|. .+.|+.+... ......+ ..
T Consensus 37 ~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~ 116 (269)
T PRK13648 37 WTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPY 116 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhcCCCH
Confidence 89999999999999999999999876442 1222221110 0000000 00
Q ss_pred c----cc-cch----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHh-CCcEE
Q 026207 76 S----AI-GTA----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAE-RGVML 132 (241)
Q Consensus 76 ~----~~-~~~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~-~g~~v 132 (241)
. .. ... .....+|++++++..+++++..+|+++++|||++++|+.... .... .|.++
T Consensus 117 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~ti 196 (269)
T PRK13648 117 DEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITI 196 (269)
T ss_pred HHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 0 00 000 012235667899999999999999999999999999995432 3333 48899
Q ss_pred EEeecCCC
Q 026207 133 IGTAHGEW 140 (241)
Q Consensus 133 i~t~H~~~ 140 (241)
|+++|...
T Consensus 197 iivtH~~~ 204 (269)
T PRK13648 197 ISITHDLS 204 (269)
T ss_pred EEEecCch
Confidence 99999875
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.7e-15 Score=127.85 Aligned_cols=124 Identities=14% Similarity=0.182 Sum_probs=82.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC----------------------eEEEEcCCc--ccCCCCC-----------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK----------------------RVVIVDTSN--EIGGDGD----------- 72 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------------~v~~i~~~~--e~~~~~~----------- 72 (241)
+++|.||||||||||++.|++.+++..|. .+.|+.+.. .+.....
T Consensus 35 ~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~ 114 (280)
T PRK13649 35 YTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNF 114 (280)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHc
Confidence 89999999999999999999998776432 123333211 0100000
Q ss_pred -Ccccc-----------ccc-----hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhC
Q 026207 73 -IPHSA-----------IGT-----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAER 128 (241)
Q Consensus 73 -~~~~~-----------~~~-----~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~ 128 (241)
..... .+. ......+|+|++++..+++++..+|+++++|||++++|+.... ...+.
T Consensus 115 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~ 194 (280)
T PRK13649 115 GVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQS 194 (280)
T ss_pred CCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHC
Confidence 00000 000 0011235567899999999999999999999999999995432 33345
Q ss_pred CcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 129 GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 129 g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
|.++|+++|..+ .+..+ ||++++
T Consensus 195 ~~tiiivsH~~~--------~~~~~---~d~i~~ 217 (280)
T PRK13649 195 GMTIVLVTHLMD--------DVANY---ADFVYV 217 (280)
T ss_pred CCEEEEEeccHH--------HHHHh---CCEEEE
Confidence 889999999886 45556 787776
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.7e-14 Score=121.20 Aligned_cols=124 Identities=17% Similarity=0.154 Sum_probs=82.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC-------------------eEEEEcCCcccCCCCCC---------cc-c--
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK-------------------RVVIVDTSNEIGGDGDI---------PH-S-- 76 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-------------------~v~~i~~~~e~~~~~~~---------~~-~-- 76 (241)
+++|+||||||||||++.|++.+++..|. .+.|+.+.........+ .. .
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~ 107 (230)
T TIGR03410 28 VTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALPRRS 107 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcCcch
Confidence 89999999999999999999999876442 12333211111100000 00 0
Q ss_pred ------cccch--------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHh-CCcEEEE
Q 026207 77 ------AIGTA--------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAE-RGVMLIG 134 (241)
Q Consensus 77 ------~~~~~--------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~-~g~~vi~ 134 (241)
..... .....+|++++++..+++++..+|+++++|||++++|+.... +..+ .|.++|+
T Consensus 108 ~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~ 187 (230)
T TIGR03410 108 RKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILL 187 (230)
T ss_pred HHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEE
Confidence 00000 011225667799999999999999999999999999995432 3333 4889999
Q ss_pred eecCCChhhhhcCCccccccccccEEEe
Q 026207 135 TAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 135 t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++|... .+..+ ||+|+.
T Consensus 188 ~sH~~~--------~~~~~---~d~v~~ 204 (230)
T TIGR03410 188 VEQYLD--------FAREL---ADRYYV 204 (230)
T ss_pred EeCCHH--------HHHHh---CCEEEE
Confidence 999986 55556 777776
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.2e-15 Score=125.63 Aligned_cols=124 Identities=12% Similarity=0.134 Sum_probs=83.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCC-CC-----Cc---------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGD-GD-----IP--------- 74 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~-~~-----~~--------- 74 (241)
+++|+||||||||||++.|++..++..|. .+.|+.+....... .. ..
T Consensus 39 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~ 118 (265)
T PRK10575 39 VTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALG 118 (265)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCccccccccc
Confidence 89999999999999999999998766432 13344322111100 00 00
Q ss_pred ---ccc---cc-chh----------hcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHh-CC
Q 026207 75 ---HSA---IG-TAR----------RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAE-RG 129 (241)
Q Consensus 75 ---~~~---~~-~~~----------~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~-~g 129 (241)
... .. ... ....+|+|++++..+++++..+|+++|+|||++++|+.... .... .|
T Consensus 119 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~ 198 (265)
T PRK10575 119 RFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERG 198 (265)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 000 00 000 12235668899999999999999999999999999995432 3333 48
Q ss_pred cEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 130 VMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 130 ~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
.++|+++|..+ .+..+ ||+|+.
T Consensus 199 ~tiii~sH~~~--------~i~~~---~d~i~~ 220 (265)
T PRK10575 199 LTVIAVLHDIN--------MAARY---CDYLVA 220 (265)
T ss_pred CEEEEEeCCHH--------HHHHh---CCEEEE
Confidence 89999999886 55666 788766
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.2e-15 Score=137.60 Aligned_cols=149 Identities=15% Similarity=0.138 Sum_probs=93.0
Q ss_pred CccccceeeEEEEEeEEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccc--cCCC-------------------
Q 026207 1 MLRLRNVFLLIVKFFYALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSD--EFQK------------------- 56 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~--~~g~------------------- 56 (241)
||+++|+..-.- -+.+++.+ .+..| +++|+||||||||||++.|++.+++ ..|.
T Consensus 5 ~l~~~nl~~~~~--~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (506)
T PRK13549 5 LLEMKNITKTFG--GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERA 82 (506)
T ss_pred eEEEeeeEEEeC--CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHC
Confidence 677788753210 11244443 33344 8999999999999999999999875 3222
Q ss_pred eEEEEcCCcccCCC-C--------C-------Ccccc-ccc----h----------hhcCCCCCcccHHHHHHHHHhcCC
Q 026207 57 RVVIVDTSNEIGGD-G--------D-------IPHSA-IGT----A----------RRMQVPEPSLQHKVMIEAVENHMP 105 (241)
Q Consensus 57 ~v~~i~~~~e~~~~-~--------~-------~~~~~-~~~----~----------~~~~~~~~~~~~~~~~~~~l~~~p 105 (241)
.+.|+.+...+... . . ..... ... . .....+|+|++|+..+++++..+|
T Consensus 83 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p 162 (506)
T PRK13549 83 GIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQA 162 (506)
T ss_pred CeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCC
Confidence 13333322111100 0 0 00000 000 0 012335667899999999999999
Q ss_pred cEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 106 EVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 106 ~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+++|+|||++++|+.... ...+.|.++|+++|... .+..+ ||+|++
T Consensus 163 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~--------~~~~~---~d~v~~ 215 (506)
T PRK13549 163 RLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLN--------EVKAI---SDTICV 215 (506)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH--------HHHHh---cCEEEE
Confidence 999999999999995432 33456889999999886 44445 666655
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.7e-15 Score=130.14 Aligned_cols=137 Identities=15% Similarity=0.134 Sum_probs=84.6
Q ss_pred CccccceeeEEEEEe---EEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccC---CC---------------
Q 026207 1 MLRLRNVFLLIVKFF---YALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEF---QK--------------- 56 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~---~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~---g~--------------- 56 (241)
||+++|+.. ++. ..++... .+..| ++.|.||||||||||++.|+|.+.+.. |.
T Consensus 5 ~l~i~~l~~---~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~ 81 (282)
T PRK13640 5 IVEFKHVSF---TYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWD 81 (282)
T ss_pred eEEEEEEEE---EcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHH
Confidence 566777642 221 1133332 33444 899999999999999999999987763 21
Q ss_pred ---eEEEEcCCcc-cCCCCCC------cccccc------------ch----------hhcCCCCCcccHHHHHHHHHhcC
Q 026207 57 ---RVVIVDTSNE-IGGDGDI------PHSAIG------------TA----------RRMQVPEPSLQHKVMIEAVENHM 104 (241)
Q Consensus 57 ---~v~~i~~~~e-~~~~~~~------~~~~~~------------~~----------~~~~~~~~~~~~~~~~~~~l~~~ 104 (241)
++.|+.+... ......+ .....+ .+ .....+|++++++..+++++..+
T Consensus 82 ~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~ 161 (282)
T PRK13640 82 IREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVE 161 (282)
T ss_pred HHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcC
Confidence 1223321110 0000000 000000 00 01223566789999999999999
Q ss_pred CcEEEEcCCCCHHhHHHHH-------HHHh-CCcEEEEeecCCC
Q 026207 105 PEVIIVDEIGTEAEAHACR-------SIAE-RGVMLIGTAHGEW 140 (241)
Q Consensus 105 p~vlilDE~~~~~d~~~~~-------~~~~-~g~~vi~t~H~~~ 140 (241)
|+++++|||++++|+.... ...+ .|.++++++|..+
T Consensus 162 P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~ 205 (282)
T PRK13640 162 PKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDID 205 (282)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 9999999999999995432 3333 4899999999986
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.9e-15 Score=128.36 Aligned_cols=140 Identities=20% Similarity=0.205 Sum_probs=86.0
Q ss_pred CccccceeeEEEEE----eEEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCC-----------------
Q 026207 1 MLRLRNVFLLIVKF----FYALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK----------------- 56 (241)
Q Consensus 1 ~~~~~~~~~~~~r~----~~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------- 56 (241)
||+++|+..-.-.. -..++..+ .+..| +++|+||||||||||++.++|.+++..|.
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 67777775221100 01244433 23344 89999999999999999999999877443
Q ss_pred --eEEEEcCCcc--cCCCC------C------Ccccc-----------ccc----hhhcCCCCCcccHHHHHHHHHhcCC
Q 026207 57 --RVVIVDTSNE--IGGDG------D------IPHSA-----------IGT----ARRMQVPEPSLQHKVMIEAVENHMP 105 (241)
Q Consensus 57 --~v~~i~~~~e--~~~~~------~------~~~~~-----------~~~----~~~~~~~~~~~~~~~~~~~~l~~~p 105 (241)
.+.|+.+... +.... . ..... .+. ......+|++++++..+++++..+|
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p 163 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRP 163 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 1122221110 00000 0 00000 000 0012335667899999999999999
Q ss_pred cEEEEcCCCCHHhHHHHH-------HHHh-CCcEEEEeecCCC
Q 026207 106 EVIIVDEIGTEAEAHACR-------SIAE-RGVMLIGTAHGEW 140 (241)
Q Consensus 106 ~vlilDE~~~~~d~~~~~-------~~~~-~g~~vi~t~H~~~ 140 (241)
+++++|||++++|+.... ...+ .|.+++.++|..+
T Consensus 164 ~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~ 206 (280)
T PRK13633 164 ECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYME 206 (280)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChH
Confidence 999999999999995432 3333 5899999999986
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.8e-15 Score=138.07 Aligned_cols=137 Identities=12% Similarity=0.112 Sum_probs=89.2
Q ss_pred CccccceeeEEEEEe--EEeeCcce--eecc-EEEEEeCCCchHHHHHHHHHHhccccCCC-------eEEEEcCCcccC
Q 026207 1 MLRLRNVFLLIVKFF--YALYSINK--IIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK-------RVVIVDTSNEIG 68 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~--~~~~~~~~--~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-------~v~~i~~~~e~~ 68 (241)
||+++|+.. ++- +.++..++ +..| +++|+||||||||||++.|++.+++..|. ++.|+.+...+.
T Consensus 6 ~l~i~~l~~---~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~ 82 (556)
T PRK11819 6 IYTMNRVSK---VVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLD 82 (556)
T ss_pred EEEEeeEEE---EeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCC
Confidence 577777752 221 23444433 3333 89999999999999999999999876443 345554332211
Q ss_pred CC-C---CC--ccc----------------c----------------------------------------c-cchhhcC
Q 026207 69 GD-G---DI--PHS----------------A----------------------------------------I-GTARRMQ 85 (241)
Q Consensus 69 ~~-~---~~--~~~----------------~----------------------------------------~-~~~~~~~ 85 (241)
.. . .+ ... . + .......
T Consensus 83 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~ 162 (556)
T PRK11819 83 PEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVT 162 (556)
T ss_pred CCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccCchh
Confidence 10 0 00 000 0 0 0001223
Q ss_pred CCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH----HHHhCCcEEEEeecCCC
Q 026207 86 VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR----SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~----~~~~~g~~vi~t~H~~~ 140 (241)
.+|+|+++++.+++++..+|+++++|||++++|+.... ...+.+.++|+++|...
T Consensus 163 ~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~ 221 (556)
T PRK11819 163 KLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRY 221 (556)
T ss_pred hcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 46778999999999999999999999999999996554 22333458999999886
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.4e-15 Score=128.61 Aligned_cols=124 Identities=19% Similarity=0.214 Sum_probs=82.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC----------------------eEEEEcCCcccCCCCCCccc-cc-----c
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK----------------------RVVIVDTSNEIGGDGDIPHS-AI-----G 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------------~v~~i~~~~e~~~~~~~~~~-~~-----~ 79 (241)
+++|+||||||||||++.|++.+++..|. ++.|+.+...+.....+... .. +
T Consensus 52 ~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~ 131 (269)
T cd03294 52 IFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQG 131 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCcHHHHHHHHHHhcC
Confidence 89999999999999999999999876442 12222211111100000000 00 0
Q ss_pred --------c----h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHH-hCC
Q 026207 80 --------T----A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIA-ERG 129 (241)
Q Consensus 80 --------~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~-~~g 129 (241)
. . .....+|+|++++..+++++..+|+++|+|||++++|+.... ... +.|
T Consensus 132 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g 211 (269)
T cd03294 132 VPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQ 211 (269)
T ss_pred CCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcC
Confidence 0 0 012235668899999999999999999999999999995432 333 348
Q ss_pred cEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 130 VMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 130 ~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
.++|+++|..+ .+..+ ||++++
T Consensus 212 ~tiii~tH~~~--------~~~~~---~d~v~~ 233 (269)
T cd03294 212 KTIVFITHDLD--------EALRL---GDRIAI 233 (269)
T ss_pred CEEEEEeCCHH--------HHHHh---cCEEEE
Confidence 89999999876 45566 788776
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.9e-15 Score=132.14 Aligned_cols=65 Identities=15% Similarity=0.192 Sum_probs=53.0
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|++++++..+++++..+|+++++|||++++|+.... .....|.++|+++|..+ .+..+ ||+
T Consensus 177 LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~--------~~~~~---adr 245 (320)
T PRK13631 177 LSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME--------HVLEV---ADE 245 (320)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH--------HHHHh---CCE
Confidence 5567899999999999999999999999999995432 33446899999999986 44555 788
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
|++
T Consensus 246 i~v 248 (320)
T PRK13631 246 VIV 248 (320)
T ss_pred EEE
Confidence 777
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.9e-14 Score=119.27 Aligned_cols=135 Identities=19% Similarity=0.182 Sum_probs=85.5
Q ss_pred CccccceeeEEEEEeEEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccC-----CC-C
Q 026207 1 MLRLRNVFLLIVKFFYALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIG-----GD-G 71 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~-----~~-~ 71 (241)
||+++|+..-.- -..++... .+..| +++|+||||||||||++.+++..++..|. ++++ +.... .. .
T Consensus 2 ~l~~~~l~~~~~--~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~--i~~~-g~~~~~~~~~~~~~ 76 (207)
T PRK13539 2 MLEGEDLACVRG--GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGT--IKLD-GGDIDDPDVAEACH 76 (207)
T ss_pred EEEEEeEEEEEC--CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce--EEEC-CEeCcchhhHhhcE
Confidence 677888863210 11234433 23333 89999999999999999999998877543 2222 11100 00 0
Q ss_pred CCcc-----------ccc-------cc--------h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCC
Q 026207 72 DIPH-----------SAI-------GT--------A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGT 115 (241)
Q Consensus 72 ~~~~-----------~~~-------~~--------~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~ 115 (241)
.+++ ..+ +. . .....+|.+++++..+++++..+|+++++|||++
T Consensus 77 ~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~ 156 (207)
T PRK13539 77 YLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTA 156 (207)
T ss_pred EecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 0000 000 00 0 0112355677999999999999999999999999
Q ss_pred HHhHHHHH-------HHHhCCcEEEEeecCCC
Q 026207 116 EAEAHACR-------SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 116 ~~d~~~~~-------~~~~~g~~vi~t~H~~~ 140 (241)
++|+.... +.++.|.+++.++|...
T Consensus 157 ~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~ 188 (207)
T PRK13539 157 ALDAAAVALFAELIRAHLAQGGIVIAATHIPL 188 (207)
T ss_pred cCCHHHHHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 99984332 33456899999999875
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.9e-15 Score=126.81 Aligned_cols=113 Identities=20% Similarity=0.273 Sum_probs=74.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCc--ccCCCC------C------Ccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSN--EIGGDG------D------IPH 75 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~--e~~~~~------~------~~~ 75 (241)
+++|.||||||||||++.+++..++..|. ++.|+.+.. .+.... . ...
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~ 116 (271)
T PRK13632 37 YVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPP 116 (271)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCH
Confidence 89999999999999999999998876442 123332111 010000 0 000
Q ss_pred cc-----------ccc----hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhC-CcEE
Q 026207 76 SA-----------IGT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAER-GVML 132 (241)
Q Consensus 76 ~~-----------~~~----~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~-g~~v 132 (241)
.. .+. ......+|++++++..+++++..+|+++++|||++++|+.... ...+. +.++
T Consensus 117 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~ti 196 (271)
T PRK13632 117 KKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTL 196 (271)
T ss_pred HHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEE
Confidence 00 000 0012335667899999999999999999999999999995432 33333 5899
Q ss_pred EEeecCCC
Q 026207 133 IGTAHGEW 140 (241)
Q Consensus 133 i~t~H~~~ 140 (241)
|+++|...
T Consensus 197 ii~sH~~~ 204 (271)
T PRK13632 197 ISITHDMD 204 (271)
T ss_pred EEEEechh
Confidence 99999886
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.8e-15 Score=126.69 Aligned_cols=65 Identities=12% Similarity=0.181 Sum_probs=52.8
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHH-------HHHHh-CCcEEEEeecCCChhhhhcCCcccccccccc
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC-------RSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVD 158 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~-------~~~~~-~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d 158 (241)
+|++++++..+++++..+|+++++|||++++|+... ....+ .|.++|+++|... .+..+ ||
T Consensus 152 LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~--------~i~~~---~d 220 (268)
T PRK10419 152 LSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR--------LVERF---CQ 220 (268)
T ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH--------HHHHh---CC
Confidence 566789999999999999999999999999999532 23333 4889999999986 55666 88
Q ss_pred EEEe
Q 026207 159 TVTL 162 (241)
Q Consensus 159 ~V~~ 162 (241)
+++.
T Consensus 221 ~i~~ 224 (268)
T PRK10419 221 RVMV 224 (268)
T ss_pred EEEE
Confidence 8876
|
|
| >TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.5e-14 Score=126.36 Aligned_cols=114 Identities=19% Similarity=0.238 Sum_probs=88.3
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhcccc-CCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcC
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDE-FQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHM 104 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~-~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 104 (241)
.+.++|+||+||||||+++++++.+++. ++.+++++++..|+.... ... .++........+..++..+++++
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~----~~~---v~~~~~~~~~~~~~~l~~aLR~~ 204 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAA----PNV---VQLRTSDDAISMTRLLKATLRLR 204 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCC----CCE---EEEEecCCCCCHHHHHHHHhcCC
Confidence 3579999999999999999999998652 347899999888875321 111 11222222238889999999999
Q ss_pred CcEEEEcCCCCHHhHHHHHHHHhCCcE-EEEeecCCChhhhhcC
Q 026207 105 PEVIIVDEIGTEAEAHACRSIAERGVM-LIGTAHGEWLENIIKN 147 (241)
Q Consensus 105 p~vlilDE~~~~~d~~~~~~~~~~g~~-vi~t~H~~~~~~~~~~ 147 (241)
||.|+++|+++.+ +..+.++.++||. +++|+|++++.+++.+
T Consensus 205 pD~iivGEiR~~e-a~~~l~a~~tGh~G~~tTiHa~~~~~ai~R 247 (299)
T TIGR02782 205 PDRIIVGEVRGGE-ALDLLKAWNTGHPGGIATIHANNAKAALDR 247 (299)
T ss_pred CCEEEEeccCCHH-HHHHHHHHHcCCCCeEEeeccCCHHHHHHH
Confidence 9999999999886 4556788899997 9999999998887753
|
The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA. |
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.3e-15 Score=128.25 Aligned_cols=149 Identities=16% Similarity=0.183 Sum_probs=92.3
Q ss_pred CccccceeeEEEEEeEEeeCcce--eecc-EEEEEeCCCchHHHHHHHHHHhcccc--------CCC-------------
Q 026207 1 MLRLRNVFLLIVKFFYALYSINK--IIFD-FFLSYFRPGVGKTTVMREIARVLSDE--------FQK------------- 56 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~~--~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~--------~g~------------- 56 (241)
||+++|+..-. . -+.++...+ +..| +++|+||||||||||++.|++.+++. .|.
T Consensus 1 ml~~~nl~~~~-~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 1 MLTADHLHVAR-R-HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred CeEEEEEEEEE-C-CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence 78888886321 1 123444433 3334 89999999999999999999998764 332
Q ss_pred -----eEEEEcCCcccCCC---------CCCccc---------cccch--------------hhcCCCCCcccHHHHHHH
Q 026207 57 -----RVVIVDTSNEIGGD---------GDIPHS---------AIGTA--------------RRMQVPEPSLQHKVMIEA 99 (241)
Q Consensus 57 -----~v~~i~~~~e~~~~---------~~~~~~---------~~~~~--------------~~~~~~~~~~~~~~~~~~ 99 (241)
.+.|+.+....... ...+.. ..... .....+|++++++..+++
T Consensus 79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~lar 158 (272)
T PRK13547 79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFAR 158 (272)
T ss_pred HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHH
Confidence 01222211110000 000000 00000 012235567799999999
Q ss_pred HHh---------cCCcEEEEcCCCCHHhHHHHH-------HHHhC-CcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 100 VEN---------HMPEVIIVDEIGTEAEAHACR-------SIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 100 ~l~---------~~p~vlilDE~~~~~d~~~~~-------~~~~~-g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++. .+|+++++|||++++|+.... ...+. |.++|+++|..+ .+..+ ||++++
T Consensus 159 al~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~--------~~~~~---~d~i~~ 227 (272)
T PRK13547 159 VLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN--------LAARH---ADRIAM 227 (272)
T ss_pred HHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH--------HHHHh---CCEEEE
Confidence 999 499999999999999995432 33333 889999999876 45556 788776
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.1e-14 Score=117.29 Aligned_cols=54 Identities=15% Similarity=0.173 Sum_probs=44.9
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHH------HHHHhCCcEEEEeecCCC
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC------RSIAERGVMLIGTAHGEW 140 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~------~~~~~~g~~vi~t~H~~~ 140 (241)
+|+|++|+..+++++..+|++|++|||++.+||-+. ..-.+..-||+.++|.+.
T Consensus 150 LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmq 209 (253)
T COG1117 150 LSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQ 209 (253)
T ss_pred CChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHH
Confidence 577889999999999999999999999999999332 222335789999999884
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.9e-15 Score=127.97 Aligned_cols=65 Identities=12% Similarity=0.125 Sum_probs=52.3
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHH-hCCcEEEEeecCCChhhhhcCCcccccccccc
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVD 158 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~-~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d 158 (241)
+|+|++++..+++++..+|+++++|||++++|+.... ... ..|.++|+++|..+ .+..+ ||
T Consensus 151 LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~--------~~~~~---~d 219 (289)
T PRK13645 151 LSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD--------QVLRI---AD 219 (289)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH--------HHHHh---CC
Confidence 5567899999999999999999999999999995443 233 34889999999886 45556 78
Q ss_pred EEEe
Q 026207 159 TVTL 162 (241)
Q Consensus 159 ~V~~ 162 (241)
++++
T Consensus 220 ~i~~ 223 (289)
T PRK13645 220 EVIV 223 (289)
T ss_pred EEEE
Confidence 8776
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.3e-14 Score=123.26 Aligned_cols=148 Identities=16% Similarity=0.080 Sum_probs=92.2
Q ss_pred CccccceeeEEEEEeEEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhcccc-----CCC----------------
Q 026207 1 MLRLRNVFLLIVKFFYALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDE-----FQK---------------- 56 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~-----~g~---------------- 56 (241)
||+++|+..-.- -..++... .+..| +++|+||||||||||++.|++.+++. .|.
T Consensus 1 ~l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 1 AIEIENLNLFYG--EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred CEEEEEEEEEEC--CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 788888863211 01234433 23333 89999999999999999999998764 332
Q ss_pred ----eEEEEcCCcccCCCC-----C--------Ccccc-----------ccch--------hhcCCCCCcccHHHHHHHH
Q 026207 57 ----RVVIVDTSNEIGGDG-----D--------IPHSA-----------IGTA--------RRMQVPEPSLQHKVMIEAV 100 (241)
Q Consensus 57 ----~v~~i~~~~e~~~~~-----~--------~~~~~-----------~~~~--------~~~~~~~~~~~~~~~~~~~ 100 (241)
.+.|+.+...+.... . ..... .+.. .....+|++++++..++++
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~lara 158 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARA 158 (247)
T ss_pred HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHH
Confidence 122222111110000 0 00000 0000 0112346678999999999
Q ss_pred HhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 101 ENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 101 l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+..+|+++++|||++++|+.... ...+ +.++|.++|..+ .+..+ ||++++
T Consensus 159 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~--------~~~~~---~d~i~~ 215 (247)
T TIGR00972 159 LAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQ--------QAARI---SDRTAF 215 (247)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHH--------HHHHh---CCEEEE
Confidence 99999999999999999995432 3333 478999999886 55666 888876
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=99.57 E-value=8e-15 Score=122.00 Aligned_cols=125 Identities=15% Similarity=0.112 Sum_probs=83.7
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCC----------------------eEEEEcCCcccCCCCCCcc------cc-
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQK----------------------RVVIVDTSNEIGGDGDIPH------SA- 77 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------------~v~~i~~~~e~~~~~~~~~------~~- 77 (241)
.+++|.||||||||||++.+++.+++..|. .+.|+.+...+.....+.. ..
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~ 103 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRK 103 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHHHHHHHhhC
Confidence 899999999999999999999998876442 1223322111110000000 00
Q ss_pred -----ccc----h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHh-CCc
Q 026207 78 -----IGT----A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAE-RGV 130 (241)
Q Consensus 78 -----~~~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~-~g~ 130 (241)
... . .....+|++++++..+++++..+|+++++|||++++|+.... ...+ .|.
T Consensus 104 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~ 183 (214)
T cd03297 104 RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNI 183 (214)
T ss_pred CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCc
Confidence 000 0 012235667899999999999999999999999999995433 3333 388
Q ss_pred EEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 131 MLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 131 ~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++|+++|..+ .+..+ ||++++
T Consensus 184 tiii~sH~~~--------~~~~~---~d~i~~ 204 (214)
T cd03297 184 PVIFVTHDLS--------EAEYL---ADRIVV 204 (214)
T ss_pred EEEEEecCHH--------HHHHh---cCEEEE
Confidence 9999999986 55566 788776
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.3e-14 Score=124.46 Aligned_cols=65 Identities=18% Similarity=0.212 Sum_probs=52.3
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHh-CCcEEEEeecCCChhhhhcCCcccccccccc
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVD 158 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~-~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d 158 (241)
+|.+++++..+++++..+|+++++|||++++|+.... ...+ .|.++|+++|... .+..+ ||
T Consensus 153 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~--------~~~~~---~d 221 (262)
T PRK09984 153 LSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD--------YALRY---CE 221 (262)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--------HHHHh---CC
Confidence 5667899999999999999999999999999995432 3333 4899999999986 45555 77
Q ss_pred EEEe
Q 026207 159 TVTL 162 (241)
Q Consensus 159 ~V~~ 162 (241)
+++.
T Consensus 222 ~i~~ 225 (262)
T PRK09984 222 RIVA 225 (262)
T ss_pred EEEE
Confidence 7766
|
|
| >PRK13851 type IV secretion system protein VirB11; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.7e-14 Score=127.92 Aligned_cols=117 Identities=20% Similarity=0.187 Sum_probs=89.3
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCC
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMP 105 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p 105 (241)
.+.++|+||+||||||+++++++.++++ .+++++++..|+...... +..... .+-........+..++..+++++|
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~i~~~--~rivtiEd~~El~l~~~~-~v~l~~-~~~~~~~~~~t~~~ll~~~LR~~p 237 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISAIPPQ--ERLITIEDTLELVIPHEN-HVRLLY-SKNGAGLGAVTAEHLLQASLRMRP 237 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHcccCCC--CCEEEECCCccccCCCCC-EEEEEe-eccccCcCccCHHHHHHHHhcCCC
Confidence 4579999999999999999999999876 788999988887542110 000100 111112235788999999999999
Q ss_pred cEEEEcCCCCHHhHHHHHHHHhCCcE-EEEeecCCChhhhhcC
Q 026207 106 EVIIVDEIGTEAEAHACRSIAERGVM-LIGTAHGEWLENIIKN 147 (241)
Q Consensus 106 ~vlilDE~~~~~d~~~~~~~~~~g~~-vi~t~H~~~~~~~~~~ 147 (241)
|.|+++|+++.+ +..+.++.++|+. +++|+|++++.+++.+
T Consensus 238 D~IivGEiR~~e-a~~~l~a~~tGh~G~ltTiHa~s~~~a~~R 279 (344)
T PRK13851 238 DRILLGEMRDDA-AWAYLSEVVSGHPGSISTIHGANPVQGFKK 279 (344)
T ss_pred CeEEEEeeCcHH-HHHHHHHHHhCCCcEEECCCCCCHHHHHHH
Confidence 999999999886 5556678888997 9999999998877653
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.7e-15 Score=123.91 Aligned_cols=121 Identities=17% Similarity=0.245 Sum_probs=82.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccC--C--CCCCcc------------------cc--------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIG--G--DGDIPH------------------SA-------- 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~--~--~~~~~~------------------~~-------- 77 (241)
+++|+||||||||||++.+++..++..|. ++++ +.... . ....+. ..
T Consensus 50 ~~~i~G~nGsGKSTLl~~l~G~~~p~~G~--i~~~-g~~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~ 126 (224)
T cd03220 50 RIGLIGRNGAGKSTLLRLLAGIYPPDSGT--VTVR-GRVSSLLGLGGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEI 126 (224)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceE--EEEC-CEEchhhcccccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 89999999999999999999998877543 3333 11100 0 000000 00
Q ss_pred ---ccc----hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhh
Q 026207 78 ---IGT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLEN 143 (241)
Q Consensus 78 ---~~~----~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~ 143 (241)
.+. ......+|.+++++..+++++..+|+++|+|||++++|+.... ...+.|.++|+++|...
T Consensus 127 l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~--- 203 (224)
T cd03220 127 IEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPS--- 203 (224)
T ss_pred HHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH---
Confidence 000 0112335667899999999999999999999999999995322 33445789999999986
Q ss_pred hhcCCccccccccccEEEe
Q 026207 144 IIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 144 ~~~~p~l~~l~~~~d~V~~ 162 (241)
.+..+ +|+++.
T Consensus 204 -----~~~~~---~d~i~~ 214 (224)
T cd03220 204 -----SIKRL---CDRALV 214 (224)
T ss_pred -----HHHHh---CCEEEE
Confidence 45555 777765
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.8e-14 Score=119.53 Aligned_cols=124 Identities=15% Similarity=0.083 Sum_probs=83.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC----------------eEEEEcCCcccCCC-C--------CCcccc-----
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK----------------RVVIVDTSNEIGGD-G--------DIPHSA----- 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------~v~~i~~~~e~~~~-~--------~~~~~~----- 77 (241)
+++|.||||||||||++.+++..++..|. .+.|+.+....... . ......
T Consensus 26 ~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~ 105 (211)
T cd03298 26 ITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAED 105 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhcccccccCccHHH
Confidence 89999999999999999999999876442 13333322111100 0 000000
Q ss_pred ccc----h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHH-hCCcEEEEe
Q 026207 78 IGT----A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIA-ERGVMLIGT 135 (241)
Q Consensus 78 ~~~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~-~~g~~vi~t 135 (241)
... . .....+|++++++..+++++..+|+++++|||++++|+.... +.. +.|.+++++
T Consensus 106 ~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~ 185 (211)
T cd03298 106 RQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMV 185 (211)
T ss_pred HHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 000 0 012335667899999999999999999999999999995432 332 358999999
Q ss_pred ecCCChhhhhcCCccccccccccEEEe
Q 026207 136 AHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 136 ~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+|... .+..+ ||+++.
T Consensus 186 sH~~~--------~~~~~---~d~i~~ 201 (211)
T cd03298 186 THQPE--------DAKRL---AQRVVF 201 (211)
T ss_pred ecCHH--------HHHhh---hCEEEE
Confidence 99886 55566 788776
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.3e-14 Score=128.58 Aligned_cols=124 Identities=17% Similarity=0.173 Sum_probs=82.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC---------------------eEEEEcCCc--ccCCCCC------------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK---------------------RVVIVDTSN--EIGGDGD------------ 72 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~---------------------~v~~i~~~~--e~~~~~~------------ 72 (241)
++.|+|+||||||||+++|++.+++..|. ++.|+.+.. .+.....
T Consensus 49 ~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~ 128 (331)
T PRK15079 49 TLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTY 128 (331)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHh
Confidence 89999999999999999999999876432 233332221 0110000
Q ss_pred ---Ccccc-----------ccc-----hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHH
Q 026207 73 ---IPHSA-----------IGT-----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIA 126 (241)
Q Consensus 73 ---~~~~~-----------~~~-----~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~ 126 (241)
..... ++. ......+|+|++|++.+++++..+|++||+|||++++|+.... ...
T Consensus 129 ~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~ 208 (331)
T PRK15079 129 HPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQ 208 (331)
T ss_pred ccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 00000 000 0011235668899999999999999999999999999984332 333
Q ss_pred h-CCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 127 E-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 127 ~-~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+ .|.++|+++|... .+.++ ||+|++
T Consensus 209 ~~~~~til~iTHdl~--------~~~~~---~dri~v 234 (331)
T PRK15079 209 REMGLSLIFIAHDLA--------VVKHI---SDRVLV 234 (331)
T ss_pred HHcCCEEEEEeCCHH--------HHHHh---CCEEEE
Confidence 3 4899999999997 45555 677665
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.2e-14 Score=123.94 Aligned_cols=65 Identities=14% Similarity=0.175 Sum_probs=51.3
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHH-hCCcEEEEeecCCChhhhhcCCcccccccccc
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVD 158 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~-~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d 158 (241)
+|+|++++..+++++..+|+++++|||++++|+.... ... +.|.++|+++|... .+..+ ||
T Consensus 149 LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~--------~~~~~---~d 217 (253)
T TIGR02323 149 FSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG--------VARLL---AQ 217 (253)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--------HHHHh---cC
Confidence 4557799999999999999999999999999985432 333 34889999999876 44455 77
Q ss_pred EEEe
Q 026207 159 TVTL 162 (241)
Q Consensus 159 ~V~~ 162 (241)
+++.
T Consensus 218 ~~~~ 221 (253)
T TIGR02323 218 RLLV 221 (253)
T ss_pred EEEE
Confidence 7766
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.9e-15 Score=136.83 Aligned_cols=122 Identities=13% Similarity=0.148 Sum_probs=82.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCc-------ccCCCCC-------------Ccccc----------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN-------EIGGDGD-------------IPHSA---------- 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~-------e~~~~~~-------------~~~~~---------- 77 (241)
+++|+||||||||||+++|+|.+++..|. ++++... .+..... .....
T Consensus 52 ivgIiGpNGSGKSTLLkiLaGLl~P~sGe--I~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe 129 (549)
T PRK13545 52 IVGIIGLNGSGKSTLSNLIAGVTMPNKGT--VDIKGSAALIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIE 129 (549)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCceE--EEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHH
Confidence 89999999999999999999999887543 2232100 0000000 00000
Q ss_pred -ccc----hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhh
Q 026207 78 -IGT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENII 145 (241)
Q Consensus 78 -~~~----~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~ 145 (241)
.+. ......+|+|++++..+++++..+|+++++|||++++|+.... ...+.|.++|+++|..+
T Consensus 130 ~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~----- 204 (549)
T PRK13545 130 FADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLS----- 204 (549)
T ss_pred HcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH-----
Confidence 000 0122346778899999999999999999999999999995332 33456889999999886
Q ss_pred cCCccccccccccEEEe
Q 026207 146 KNPILSDLIGGVDTVTL 162 (241)
Q Consensus 146 ~~p~l~~l~~~~d~V~~ 162 (241)
.+..+ ||++++
T Consensus 205 ---~i~~l---~DrIiv 215 (549)
T PRK13545 205 ---QVKSF---CTKALW 215 (549)
T ss_pred ---HHHHh---CCEEEE
Confidence 45555 677665
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1e-14 Score=136.01 Aligned_cols=149 Identities=13% Similarity=0.088 Sum_probs=93.1
Q ss_pred CccccceeeEEEEEeEEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCC-------------------eE
Q 026207 1 MLRLRNVFLLIVKFFYALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK-------------------RV 58 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-------------------~v 58 (241)
||+++|+..-.- -+.++..+ .+..| +++|+||||||||||++.|++.+++..|. .+
T Consensus 4 ~l~~~~l~~~~~--~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i 81 (501)
T PRK11288 4 YLSFDGIGKTFP--GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGV 81 (501)
T ss_pred eEEEeeeEEEEC--CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCE
Confidence 577777753210 11233332 33444 89999999999999999999998776442 13
Q ss_pred EEEcCCcccCCCCCC------cc--cccc---------c--------------hhhcCCCCCcccHHHHHHHHHhcCCcE
Q 026207 59 VIVDTSNEIGGDGDI------PH--SAIG---------T--------------ARRMQVPEPSLQHKVMIEAVENHMPEV 107 (241)
Q Consensus 59 ~~i~~~~e~~~~~~~------~~--~~~~---------~--------------~~~~~~~~~~~~~~~~~~~~l~~~p~v 107 (241)
.|+.+.........+ .. ...+ . ......+|+|++|+..+++++..+|++
T Consensus 82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~l 161 (501)
T PRK11288 82 AIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARV 161 (501)
T ss_pred EEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCE
Confidence 333221111100000 00 0000 0 011233567889999999999999999
Q ss_pred EEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 108 IIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 108 lilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+++|||++++|+.... ...+.|.++|+++|... .+..+ ||+|+.
T Consensus 162 llLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~--------~~~~~---~d~i~~ 212 (501)
T PRK11288 162 IAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME--------EIFAL---CDAITV 212 (501)
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--------HHHHh---CCEEEE
Confidence 9999999999995432 33456899999999876 44455 666655
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.8e-15 Score=124.75 Aligned_cols=64 Identities=17% Similarity=0.225 Sum_probs=52.1
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|+|++++..+++++..+|+++++|||++++|+.... .. ..+.++|+++|..+ .+..+ ||+
T Consensus 150 LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tvii~tH~~~--------~~~~~---~d~ 217 (253)
T PRK14242 150 LSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHEL-KARYTIIIVTHNMQ--------QAARV---SDV 217 (253)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-hcCCeEEEEEecHH--------HHHHh---CCE
Confidence 5667899999999999999999999999999995432 33 34789999999886 55566 788
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
|++
T Consensus 218 v~~ 220 (253)
T PRK14242 218 TAF 220 (253)
T ss_pred EEE
Confidence 776
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.1e-15 Score=129.62 Aligned_cols=65 Identities=15% Similarity=0.263 Sum_probs=52.5
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHH-hCCcEEEEeecCCChhhhhcCCcccccccccc
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVD 158 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~-~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d 158 (241)
+|+|++|++++++++..+|++||+|||++++|+.... ... +.|.++|+++|..+ .+..+ +|
T Consensus 154 LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~--------~~~~~---ad 222 (326)
T PRK11022 154 LSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA--------LVAEA---AH 222 (326)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--------HHHHh---CC
Confidence 5668899999999999999999999999999994332 333 35899999999997 44555 77
Q ss_pred EEEe
Q 026207 159 TVTL 162 (241)
Q Consensus 159 ~V~~ 162 (241)
+|++
T Consensus 223 ri~v 226 (326)
T PRK11022 223 KIIV 226 (326)
T ss_pred EEEE
Confidence 7666
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.9e-15 Score=123.19 Aligned_cols=128 Identities=18% Similarity=0.154 Sum_probs=85.4
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc---------------CCcccCCCCCCcc----------cccc-
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD---------------TSNEIGGDGDIPH----------SAIG- 79 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~---------------~~~e~~~~~~~~~----------~~~~- 79 (241)
..+++|+||||||||||++.+++.+++..|. ++++ +...+.....+.. ....
T Consensus 11 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~--i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~ 88 (230)
T TIGR01184 11 GEFISLIGHSGCGKSTLLNLISGLAQPTSGG--VILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVDRVLPDLSK 88 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCce--EEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHHhcccCCCH
Confidence 3489999999999999999999999877543 2222 1110000000000 0000
Q ss_pred -----c----h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHh-CCcEE
Q 026207 80 -----T----A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAE-RGVML 132 (241)
Q Consensus 80 -----~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~-~g~~v 132 (241)
. . .....+|+|++++..+++++..+|+++++|||++++|+.... .... .|.++
T Consensus 89 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~ti 168 (230)
T TIGR01184 89 SERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTV 168 (230)
T ss_pred HHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 0 0 012235667899999999999999999999999999995432 3333 48899
Q ss_pred EEeecCCChhhhhcCCccccccccccEEEe-CChH
Q 026207 133 IGTAHGEWLENIIKNPILSDLIGGVDTVTL-GDEE 166 (241)
Q Consensus 133 i~t~H~~~~~~~~~~p~l~~l~~~~d~V~~-~~~~ 166 (241)
|+++|... .+.++ ||+|++ .++.
T Consensus 169 i~~sH~~~--------~~~~~---~d~v~~l~~G~ 192 (230)
T TIGR01184 169 LMVTHDVD--------EALLL---SDRVVMLTNGP 192 (230)
T ss_pred EEEeCCHH--------HHHHh---cCEEEEEeCCc
Confidence 99999886 55666 888887 4433
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.5e-14 Score=116.38 Aligned_cols=109 Identities=16% Similarity=0.277 Sum_probs=76.1
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCC--------C-CCCcccc-c-cchhhcCCCCCcccHHHH
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGG--------D-GDIPHSA-I-GTARRMQVPEPSLQHKVM 96 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~--------~-~~~~~~~-~-~~~~~~~~~~~~~~~~~~ 96 (241)
+++|.||||||||||++.+++..++..|. ++++ +..+.. . ...++.. . .....-..+|.+++++..
T Consensus 30 ~~~l~G~nGsGKstLl~~i~G~~~~~~G~--i~~~-g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~~~rl~ 106 (171)
T cd03228 30 KVAIVGPSGSGKSTLLKLLLRLYDPTSGE--ILID-GVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQRQRIA 106 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCE--EEEC-CEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHHHHHHH
Confidence 89999999999999999999999887554 4444 222110 0 0111110 0 000001117778999999
Q ss_pred HHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCC
Q 026207 97 IEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 97 ~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~ 140 (241)
+++++..+|+++++|||++++|+.... .. ..+.++++++|...
T Consensus 107 la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~-~~~~tii~~sh~~~ 156 (171)
T cd03228 107 IARALLRDPPILILDEATSALDPETEALILEALRAL-AKGKTVIVIAHRLS 156 (171)
T ss_pred HHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHh-cCCCEEEEEecCHH
Confidence 999999999999999999999985432 22 24688999999886
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.3e-14 Score=137.50 Aligned_cols=124 Identities=17% Similarity=0.196 Sum_probs=85.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC-----eEEEEcCCcccCCCCCCc-----------cc-c-------ccc---
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK-----RVVIVDTSNEIGGDGDIP-----------HS-A-------IGT--- 80 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-----~v~~i~~~~e~~~~~~~~-----------~~-~-------~~~--- 80 (241)
++.|+||||||||||++.|++.++++.|. ++.|+.+.........+. .. . ++.
T Consensus 367 iv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~ 446 (590)
T PRK13409 367 VIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERL 446 (590)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHH
Confidence 89999999999999999999999877543 234444322211100000 00 0 000
Q ss_pred -hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HH-HhCCcEEEEeecCCChhhhhcCCccc
Q 026207 81 -ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SI-AERGVMLIGTAHGEWLENIIKNPILS 151 (241)
Q Consensus 81 -~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~-~~~g~~vi~t~H~~~~~~~~~~p~l~ 151 (241)
......+|+|++|++.+++++.++|+++++|||++++|+.... .. .+.|.++|+++|... .+.
T Consensus 447 ~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~--------~~~ 518 (590)
T PRK13409 447 LDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY--------MID 518 (590)
T ss_pred HhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--------HHH
Confidence 0123457788999999999999999999999999999995432 22 235889999999986 445
Q ss_pred cccccccEEEe
Q 026207 152 DLIGGVDTVTL 162 (241)
Q Consensus 152 ~l~~~~d~V~~ 162 (241)
.+ +|+|+.
T Consensus 519 ~~---aDrviv 526 (590)
T PRK13409 519 YI---SDRLMV 526 (590)
T ss_pred Hh---CCEEEE
Confidence 55 777766
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.3e-15 Score=132.26 Aligned_cols=124 Identities=15% Similarity=0.162 Sum_probs=83.9
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCC----------------------eEEEEcCCcccCCCCCCccccc------
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQK----------------------RVVIVDTSNEIGGDGDIPHSAI------ 78 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------------~v~~i~~~~e~~~~~~~~~~~~------ 78 (241)
.++.|.||||||||||+++|++.+++..|. .+.|+.+...+.....+. .++
T Consensus 20 ei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~-eNi~~~~~~ 98 (363)
T TIGR01186 20 EIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTIL-QNTSLGPEL 98 (363)
T ss_pred CEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHH-HHHHHHHHH
Confidence 389999999999999999999999887543 122222111111100000 000
Q ss_pred -c--c----------h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHH-h
Q 026207 79 -G--T----------A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIA-E 127 (241)
Q Consensus 79 -~--~----------~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~-~ 127 (241)
+ . . .....+|+|++|++.+++++..+|+++++|||++.+|+.... ... .
T Consensus 99 ~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~ 178 (363)
T TIGR01186 99 LGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQAT 178 (363)
T ss_pred cCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 0 0 0 012235678899999999999999999999999999995432 232 3
Q ss_pred CCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 128 RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 128 ~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
.|.|+|+++|..+ .+..+ ||+|++
T Consensus 179 ~~~Tii~vTHd~~--------ea~~~---~drI~v 202 (363)
T TIGR01186 179 LQKTIVFITHDLD--------EAIRI---GDRIVI 202 (363)
T ss_pred cCCEEEEEeCCHH--------HHHHh---CCEEEE
Confidence 4899999999997 45555 777766
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.2e-14 Score=123.72 Aligned_cols=64 Identities=16% Similarity=0.237 Sum_probs=51.7
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|++++++..+++++..+|+++++|||++++|+.... .. ..|.++|+++|... .+..+ ||+
T Consensus 147 LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~sH~~~--------~~~~~---~d~ 214 (250)
T PRK14247 147 LSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLEL-KKDMTIVLVTHFPQ--------QAARI---SDY 214 (250)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hcCCEEEEEeCCHH--------HHHHh---cCE
Confidence 4567799999999999999999999999999995432 22 34789999999886 45556 788
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
++.
T Consensus 215 i~~ 217 (250)
T PRK14247 215 VAF 217 (250)
T ss_pred EEE
Confidence 776
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.8e-14 Score=118.94 Aligned_cols=113 Identities=12% Similarity=0.151 Sum_probs=74.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC----------------------eEEEEcCCcccCCCCCCccc-cc-----c
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK----------------------RVVIVDTSNEIGGDGDIPHS-AI-----G 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------------~v~~i~~~~e~~~~~~~~~~-~~-----~ 79 (241)
+++|+||||||||||++.+++.+++..|. .+.|+.+...+.....+... .. +
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~~ 105 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKK 105 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccCCcHHHHHHHHHHhcC
Confidence 89999999999999999999999876443 11222111111000000000 00 0
Q ss_pred ------------ch----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCc
Q 026207 80 ------------TA----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGV 130 (241)
Q Consensus 80 ------------~~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~ 130 (241)
.+ .....+|.+++++..+++++..+|+++++|||++++|+.... ...+.|.
T Consensus 106 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 185 (206)
T TIGR03608 106 LSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGK 185 (206)
T ss_pred CCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCC
Confidence 00 012235567799999999999999999999999999995432 3334588
Q ss_pred EEEEeecCCC
Q 026207 131 MLIGTAHGEW 140 (241)
Q Consensus 131 ~vi~t~H~~~ 140 (241)
++++++|...
T Consensus 186 tii~~sh~~~ 195 (206)
T TIGR03608 186 TIIIVTHDPE 195 (206)
T ss_pred EEEEEeCCHH
Confidence 9999999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.8e-14 Score=115.74 Aligned_cols=135 Identities=19% Similarity=0.228 Sum_probs=85.5
Q ss_pred CccccceeeEEEEEeEEeeC-cceeec-cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccC----------
Q 026207 1 MLRLRNVFLLIVKFFYALYS-INKIIF-DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIG---------- 68 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~-~~~~~~-g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~---------- 68 (241)
||+++|+..-.-. +.+++ ...+.. .+++|.||||||||||++.+++..++..|. ++++ +.++.
T Consensus 1 ~l~~~~l~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~--i~~~-g~~i~~~~~~~~~~~ 75 (195)
T PRK13541 1 MLSLHQLQFNIEQ--KNLFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGN--IYYK-NCNINNIAKPYCTYI 75 (195)
T ss_pred CeEEEEeeEEECC--cEEEEEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcE--EEEC-CcccChhhhhhEEec
Confidence 7888888632210 11222 112223 389999999999999999999998877553 3333 11110
Q ss_pred C-C-CCCcc----ccc-------c---c----h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHh
Q 026207 69 G-D-GDIPH----SAI-------G---T----A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAE 118 (241)
Q Consensus 69 ~-~-~~~~~----~~~-------~---~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d 118 (241)
. . ...+. ..+ + . . .....+|.+++++..+++++..+|+++++|||++++|
T Consensus 76 ~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD 155 (195)
T PRK13541 76 GHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLS 155 (195)
T ss_pred cCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 0 0 00000 000 0 0 0 0122356678999999999999999999999999999
Q ss_pred HHHHH-------HHHhCCcEEEEeecCCC
Q 026207 119 AHACR-------SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 119 ~~~~~-------~~~~~g~~vi~t~H~~~ 140 (241)
+.... ...+.|.++++++|..+
T Consensus 156 ~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 184 (195)
T PRK13541 156 KENRDLLNNLIVMKANSGGIVLLSSHLES 184 (195)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCcc
Confidence 84432 23356889999999886
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.7e-14 Score=135.98 Aligned_cols=137 Identities=12% Similarity=0.129 Sum_probs=89.8
Q ss_pred CccccceeeEEEEEe--EEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCC-------eEEEEcCCcccC
Q 026207 1 MLRLRNVFLLIVKFF--YALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK-------RVVIVDTSNEIG 68 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~--~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-------~v~~i~~~~e~~ 68 (241)
|++++|+.. ++- +.++... .+..| +++|+||||||||||++.|+|.+++..|. ++.|+.+...+.
T Consensus 4 ~i~~~nls~---~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~ 80 (552)
T TIGR03719 4 IYTMNRVSK---VVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLD 80 (552)
T ss_pred EEEEeeEEE---ecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCC
Confidence 677888853 221 2345443 33444 89999999999999999999999876442 345554332211
Q ss_pred CC-C----C---C-------------------cccc---------------------------------cc---chhhcC
Q 026207 69 GD-G----D---I-------------------PHSA---------------------------------IG---TARRMQ 85 (241)
Q Consensus 69 ~~-~----~---~-------------------~~~~---------------------------------~~---~~~~~~ 85 (241)
.. . . . +... .+ ......
T Consensus 81 ~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 160 (552)
T TIGR03719 81 PTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVT 160 (552)
T ss_pred CCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCchh
Confidence 10 0 0 0 0000 00 001223
Q ss_pred CCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH----HHHhCCcEEEEeecCCC
Q 026207 86 VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR----SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~----~~~~~g~~vi~t~H~~~ 140 (241)
.+|+|++++..+++++..+|+++++|||++.+|+.... ...+.+.++|+++|..+
T Consensus 161 ~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~ 219 (552)
T TIGR03719 161 KLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRY 219 (552)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 46778999999999999999999999999999996554 22334568999999886
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.3e-15 Score=152.96 Aligned_cols=144 Identities=14% Similarity=0.075 Sum_probs=97.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC-----------------eEEEEcCCcccCCCCCCccc------ccc-----
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK-----------------RVVIVDTSNEIGGDGDIPHS------AIG----- 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-----------------~v~~i~~~~e~~~~~~~~~~------~~~----- 79 (241)
+++|.||||||||||++.|+|.++|+.|. .+.++.+...+.....+... ..+
T Consensus 958 i~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~ 1037 (2272)
T TIGR01257 958 ITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEE 1037 (2272)
T ss_pred EEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHH
Confidence 79999999999999999999999887443 11222211111000000000 000
Q ss_pred -------ch----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEe
Q 026207 80 -------TA----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGT 135 (241)
Q Consensus 80 -------~~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t 135 (241)
.. .....+|+|++++..+++++..+|+++++|||++++|+.... +. ..|.++|.+
T Consensus 1038 ~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l-~~g~TIIlt 1116 (2272)
T TIGR01257 1038 AQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKY-RSGRTIIMS 1116 (2272)
T ss_pred HHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHH-hCCCEEEEE
Confidence 00 112346678899999999999999999999999999995443 33 358999999
Q ss_pred ecCCChhhhhcCCccccccccccEEEe-CChHHHHHHHHHhhhccCCCC
Q 026207 136 AHGEWLENIIKNPILSDLIGGVDTVTL-GDEEARARRCQKSILERKAPP 183 (241)
Q Consensus 136 ~H~~~~~~~~~~p~l~~l~~~~d~V~~-~~~~~~~~~~~~~~k~r~g~~ 183 (241)
+|..+ .+..+ +|+|++ .++.....+....+|+++|..
T Consensus 1117 THdmd--------ea~~l---aDrI~iL~~GkL~~~Gs~~~Lk~~~g~g 1154 (2272)
T TIGR01257 1117 THHMD--------EADLL---GDRIAIISQGRLYCSGTPLFLKNCFGTG 1154 (2272)
T ss_pred ECCHH--------HHHHh---CCEEEEEECCEEEEecCHHHHHHhcCCc
Confidence 99997 56666 899887 554443346777888888754
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.2e-14 Score=132.83 Aligned_cols=137 Identities=18% Similarity=0.238 Sum_probs=93.3
Q ss_pred EEEeEEeeCcceeecc---------EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCC-------------
Q 026207 12 VKFFYALYSINKIIFD---------FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGG------------- 69 (241)
Q Consensus 12 ~r~~~~~~~~~~~~~g---------~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~------------- 69 (241)
++...+.|+.+..+.+ +..|.|.||||||||++.|+|.++|+.|. +.++ +.+...
T Consensus 11 ~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~--I~~~-G~~~~~~sp~~A~~~GI~~ 87 (500)
T COG1129 11 LRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGE--ILID-GKPVAFSSPRDALAAGIAT 87 (500)
T ss_pred eecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCce--EEEC-CEEccCCCHHHHHhCCcEE
Confidence 3333567777666555 79999999999999999999999988553 3333 211100
Q ss_pred ---------C---------CCCccccccc-------------hhhcC----------CCCCcccHHHHHHHHHhcCCcEE
Q 026207 70 ---------D---------GDIPHSAIGT-------------ARRMQ----------VPEPSLQHKVMIEAVENHMPEVI 108 (241)
Q Consensus 70 ---------~---------~~~~~~~~~~-------------~~~~~----------~~~~~~~~~~~~~~~l~~~p~vl 108 (241)
. +..+....+. ..++. .++.+.+|.+.++.++..++++|
T Consensus 88 V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arll 167 (500)
T COG1129 88 VHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVL 167 (500)
T ss_pred EeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 0 0000000000 00111 12334588889999999999999
Q ss_pred EEcCCCCHHhHHHH-------HHHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 109 IVDEIGTEAEAHAC-------RSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 109 ilDE~~~~~d~~~~-------~~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
|+|||++.++.... +..+..|+++|..+|..+ ++.++ ||+|++
T Consensus 168 IlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~--------Ei~~i---~DritV 217 (500)
T COG1129 168 ILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLD--------EVFEI---ADRITV 217 (500)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHH--------HHHHh---cCEEEE
Confidence 99999999888433 367789999999999886 67777 898887
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.6e-14 Score=121.26 Aligned_cols=124 Identities=19% Similarity=0.285 Sum_probs=83.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCCCCC---------cc-----
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGDGDI---------PH----- 75 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~~~~---------~~----- 75 (241)
+++|.||||+|||||++.|++.+++..|. .+.|+.+.........+ ..
T Consensus 29 ~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~ 108 (256)
T TIGR03873 29 LTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWA 108 (256)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhcc
Confidence 89999999999999999999998876442 13344322111100000 00
Q ss_pred ----ccccc----hh----------hcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCc
Q 026207 76 ----SAIGT----AR----------RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGV 130 (241)
Q Consensus 76 ----~~~~~----~~----------~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~ 130 (241)
..... .. ....+|++++++..+++++..+|+++++|||++++|+.... +.++.|.
T Consensus 109 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 188 (256)
T TIGR03873 109 GDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGV 188 (256)
T ss_pred CCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCC
Confidence 00000 00 12235667899999999999999999999999999995432 3344588
Q ss_pred EEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 131 MLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 131 ~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++++++|..+ .+..+ ||+|++
T Consensus 189 tiii~sH~~~--------~~~~~---~d~i~~ 209 (256)
T TIGR03873 189 TVVAALHDLN--------LAASY---CDHVVV 209 (256)
T ss_pred EEEEEeCCHH--------HHHHh---CCEEEE
Confidence 9999999886 55556 788776
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.7e-15 Score=123.57 Aligned_cols=112 Identities=21% Similarity=0.207 Sum_probs=76.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCCC------C----Cccccc-
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGDG------D----IPHSAI- 78 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~~------~----~~~~~~- 78 (241)
+++|+||||||||||++.|++.+++..|. .+.|+.+...+.... . ......
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~ 109 (237)
T cd03252 30 VVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVI 109 (237)
T ss_pred EEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhccchHHHHhhccCCCCCHHHHH
Confidence 89999999999999999999998776442 233433221111000 0 000000
Q ss_pred ------cc---------------hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCc
Q 026207 79 ------GT---------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGV 130 (241)
Q Consensus 79 ------~~---------------~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~ 130 (241)
+. ......+|++++++..+++++..+|+++++|||++++|+.... ... .|.
T Consensus 110 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~ 188 (237)
T cd03252 110 EAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC-AGR 188 (237)
T ss_pred HHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCC
Confidence 00 0012346678899999999999999999999999999995432 333 488
Q ss_pred EEEEeecCCC
Q 026207 131 MLIGTAHGEW 140 (241)
Q Consensus 131 ~vi~t~H~~~ 140 (241)
++|+++|...
T Consensus 189 tiii~sH~~~ 198 (237)
T cd03252 189 TVIIIAHRLS 198 (237)
T ss_pred EEEEEeCCHH
Confidence 9999999886
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=99.55 E-value=1e-14 Score=123.28 Aligned_cols=122 Identities=16% Similarity=0.198 Sum_probs=81.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCCC-----CC--cc---ccc-
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGDG-----DI--PH---SAI- 78 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~~-----~~--~~---~~~- 78 (241)
+++|+||||||||||++.|++.+++..|. .+.|+.+...+.... .. .. ...
T Consensus 31 ~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~ 110 (238)
T cd03249 31 TVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVE 110 (238)
T ss_pred EEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhhhhHHHHhhccCCCCCHHHHH
Confidence 89999999999999999999998877442 123332111110000 00 00 000
Q ss_pred ------cch---------------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCc
Q 026207 79 ------GTA---------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGV 130 (241)
Q Consensus 79 ------~~~---------------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~ 130 (241)
+.. .....+|++++++..+++++..+|+++++|||++++|+.... ... .|.
T Consensus 111 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~ 189 (238)
T cd03249 111 EAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGR 189 (238)
T ss_pred HHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCC
Confidence 000 011235678899999999999999999999999999995433 333 688
Q ss_pred EEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 131 MLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 131 ~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++|+++|..+ .+. . ||+++.
T Consensus 190 ~vi~~sh~~~--------~~~-~---~d~v~~ 209 (238)
T cd03249 190 TTIVIAHRLS--------TIR-N---ADLIAV 209 (238)
T ss_pred EEEEEeCCHH--------HHh-h---CCEEEE
Confidence 9999999886 343 4 788776
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.6e-14 Score=121.22 Aligned_cols=116 Identities=16% Similarity=0.139 Sum_probs=77.1
Q ss_pred eecc-EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCCC----------CCc
Q 026207 24 IIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGDG----------DIP 74 (241)
Q Consensus 24 ~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~~----------~~~ 74 (241)
+..| +++|.||||||||||++.|++.+++..|. .+.|+.+...+.... ...
T Consensus 26 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~~~~~~~~~~ 105 (229)
T cd03254 26 IKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNAT 105 (229)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhhHHHHHHhccCCCCC
Confidence 3344 89999999999999999999999876442 133333211110000 000
Q ss_pred cccc-------cc---h------------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HH
Q 026207 75 HSAI-------GT---A------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SI 125 (241)
Q Consensus 75 ~~~~-------~~---~------------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~ 125 (241)
.... +. . .....+|++++++..+++++..+|+++++|||++++|+.... ..
T Consensus 106 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~ 185 (229)
T cd03254 106 DEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKL 185 (229)
T ss_pred HHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHh
Confidence 0000 00 0 012346678899999999999999999999999999985432 33
Q ss_pred HhCCcEEEEeecCCC
Q 026207 126 AERGVMLIGTAHGEW 140 (241)
Q Consensus 126 ~~~g~~vi~t~H~~~ 140 (241)
. .|.++|+++|...
T Consensus 186 ~-~~~tii~~sh~~~ 199 (229)
T cd03254 186 M-KGRTSIIIAHRLS 199 (229)
T ss_pred c-CCCEEEEEecCHH
Confidence 2 4789999999875
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13833 conjugal transfer protein TrbB; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.6e-14 Score=124.63 Aligned_cols=112 Identities=18% Similarity=0.189 Sum_probs=87.3
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcccc-CCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCC
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDE-FQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMP 105 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~-~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p 105 (241)
+.++|+|++||||||++++++..+... ++.+++++++..|+... +... ..+. ......+..++..+++++|
T Consensus 145 ~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~----~~n~---v~l~-~~~~~~~~~lv~~aLR~~P 216 (323)
T PRK13833 145 LNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCA----AENA---VALH-TSDTVDMARLLKSTMRLRP 216 (323)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccC----CCCE---EEec-cCCCcCHHHHHHHHhCCCC
Confidence 468999999999999999999987311 23689999999887532 1111 0111 1235788899999999999
Q ss_pred cEEEEcCCCCHHhHHHHHHHHhCCcE-EEEeecCCChhhhhcC
Q 026207 106 EVIIVDEIGTEAEAHACRSIAERGVM-LIGTAHGEWLENIIKN 147 (241)
Q Consensus 106 ~vlilDE~~~~~d~~~~~~~~~~g~~-vi~t~H~~~~~~~~~~ 147 (241)
|.|+++|+++.+ +..+.++.++||. .++|+|++++.+++.+
T Consensus 217 D~IivGEiRg~e-a~~~l~a~~tGh~G~itTiHA~s~~~a~~R 258 (323)
T PRK13833 217 DRIIVGEVRDGA-ALTLLKAWNTGHPGGVTTIHSNTAMSALRR 258 (323)
T ss_pred CEEEEeecCCHH-HHHHHHHHcCCCCceEEEECCCCHHHHHHH
Confidence 999999999885 5566788899997 8999999998887753
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.7e-14 Score=116.73 Aligned_cols=114 Identities=16% Similarity=0.148 Sum_probs=76.1
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCC-------------eEEEEcCCcccCCCCCCcccccc---chhhcCCCCCc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQK-------------RVVIVDTSNEIGGDGDIPHSAIG---TARRMQVPEPS 90 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-------------~v~~i~~~~e~~~~~~~~~~~~~---~~~~~~~~~~~ 90 (241)
.++.|.||||||||||++.++. ..|. ++.++.+ .+... ...+. .-.....+|.+
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~----~~G~v~~~~~~~~~~~~~~~~~~q-~~~l~-----~~~L~~~~~~~~~~~LSgG 91 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLY----ASGKARLISFLPKFSRNKLIFIDQ-LQFLI-----DVGLGYLTLGQKLSTLSGG 91 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhh----cCCcEEECCcccccccccEEEEhH-HHHHH-----HcCCCccccCCCcCcCCHH
Confidence 3899999999999999999863 1122 1222221 00000 00000 00123446678
Q ss_pred ccHHHHHHHHHhcC--CcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEE
Q 026207 91 LQHKVMIEAVENHM--PEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVT 161 (241)
Q Consensus 91 ~~~~~~~~~~l~~~--p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~ 161 (241)
++++..+++++..+ |+++++|||++.+|+.... ...+.|.++|+++|..+ .+ .. +|+++
T Consensus 92 q~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~--------~~-~~---~d~i~ 159 (176)
T cd03238 92 ELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLD--------VL-SS---ADWII 159 (176)
T ss_pred HHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--------HH-Hh---CCEEE
Confidence 89999999999999 9999999999999995432 33346899999999986 22 24 78877
Q ss_pred e
Q 026207 162 L 162 (241)
Q Consensus 162 ~ 162 (241)
.
T Consensus 160 ~ 160 (176)
T cd03238 160 D 160 (176)
T ss_pred E
Confidence 6
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.3e-14 Score=134.90 Aligned_cols=66 Identities=20% Similarity=0.153 Sum_probs=55.1
Q ss_pred CCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCcccccccccc
Q 026207 86 VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVD 158 (241)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d 158 (241)
.+|+|++++..+++++..+|+++++|||++++|+.... ...+.|.++|+++|..+ .+..+ ||
T Consensus 391 ~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~--------~~~~~---~d 459 (491)
T PRK10982 391 SLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMP--------ELLGI---TD 459 (491)
T ss_pred cCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChH--------HHHhh---CC
Confidence 35678899999999999999999999999999995432 34556899999999987 56666 88
Q ss_pred EEEe
Q 026207 159 TVTL 162 (241)
Q Consensus 159 ~V~~ 162 (241)
+++.
T Consensus 460 ~v~~ 463 (491)
T PRK10982 460 RILV 463 (491)
T ss_pred EEEE
Confidence 8876
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.6e-14 Score=123.24 Aligned_cols=64 Identities=16% Similarity=0.204 Sum_probs=51.9
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|++++++..+++++..+|+++++|||++++|+.... .. ..+.++|+++|..+ .+..+ +|+
T Consensus 151 LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tvii~sH~~~--------~~~~~---~d~ 218 (254)
T PRK14273 151 LSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINL-KESYTIIIVTHNMQ--------QAGRI---SDR 218 (254)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHH-hcCCEEEEEeCCHH--------HHHHh---CCE
Confidence 5667899999999999999999999999999995432 33 34789999999886 45556 788
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
+++
T Consensus 219 i~~ 221 (254)
T PRK14273 219 TAF 221 (254)
T ss_pred EEE
Confidence 776
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.3e-14 Score=120.17 Aligned_cols=66 Identities=12% Similarity=0.187 Sum_probs=52.7
Q ss_pred CCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccc
Q 026207 85 QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGV 157 (241)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~ 157 (241)
..+|++++++..+++++..+|+++++|||++++|+.... +..+. .++|+++|..+ .+..+ |
T Consensus 140 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~--------~~~~~---~ 207 (227)
T cd03260 140 LGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ--------QAARV---A 207 (227)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH--------HHHHh---C
Confidence 446668899999999999999999999999999995432 33344 78999999886 45556 7
Q ss_pred cEEEe
Q 026207 158 DTVTL 162 (241)
Q Consensus 158 d~V~~ 162 (241)
|+++.
T Consensus 208 d~i~~ 212 (227)
T cd03260 208 DRTAF 212 (227)
T ss_pred CEEEE
Confidence 88776
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.6e-14 Score=127.89 Aligned_cols=65 Identities=20% Similarity=0.266 Sum_probs=52.3
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHH-hCCcEEEEeecCCChhhhhcCCcccccccccc
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVD 158 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~-~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d 158 (241)
+|+|++|++.+++++..+|++||+|||++++|..... ... +.|.++|+++|..+ .+..+ +|
T Consensus 162 LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~--------~~~~~---~D 230 (330)
T PRK09473 162 FSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG--------VVAGI---CD 230 (330)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH--------HHHHh---CC
Confidence 4668899999999999999999999999999994432 333 34899999999987 45556 77
Q ss_pred EEEe
Q 026207 159 TVTL 162 (241)
Q Consensus 159 ~V~~ 162 (241)
+|++
T Consensus 231 ri~v 234 (330)
T PRK09473 231 KVLV 234 (330)
T ss_pred EEEE
Confidence 7665
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.4e-14 Score=123.22 Aligned_cols=64 Identities=17% Similarity=0.223 Sum_probs=50.7
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|++++++..+++++..+|+++++|||++++|+.... ... .+.++++++|... .+..+ +|+
T Consensus 147 LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tili~sH~~~--------~~~~~---~d~ 214 (250)
T PRK14262 147 LSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELS-ENYTIVIVTHNIG--------QAIRI---ADY 214 (250)
T ss_pred cCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHh-cCcEEEEEeCCHH--------HHHHh---CCE
Confidence 4557799999999999999999999999999995432 222 3688999999875 44555 788
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
+++
T Consensus 215 i~~ 217 (250)
T PRK14262 215 IAF 217 (250)
T ss_pred EEE
Confidence 776
|
|
| >PRK13764 ATPase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=6e-14 Score=131.77 Aligned_cols=126 Identities=21% Similarity=0.222 Sum_probs=92.7
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCC
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMP 105 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p 105 (241)
.+.++++|||||||||++++++..++.. ++.|.+++++.|+.....+. ++... +.........+++++|
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~~-~riV~TiEDp~El~~~~~i~--------q~~~~--~~~~~~~~~~lLR~rP 325 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYADM-GKIVKTMESPRDLQVPPEIT--------QYSKL--EGSMEETADILLLVRP 325 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhC-CCEEEEECCCccccCCCcce--------EEeec--cccHHHHHHHHHhhCC
Confidence 4579999999999999999999998754 56677999998885321111 11111 1233455566789999
Q ss_pred cEEEEcCCCCHHhHHHHHHHHhCCcEEEEeecCCChhhhhcCCc----cccccccccEEEe
Q 026207 106 EVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKNPI----LSDLIGGVDTVTL 162 (241)
Q Consensus 106 ~vlilDE~~~~~d~~~~~~~~~~g~~vi~t~H~~~~~~~~~~p~----l~~l~~~~d~V~~ 162 (241)
|++++||++...+...+..+...|+.+++|+|++++.+++.|.. +..+..-+|+|++
T Consensus 326 D~IivGEiRd~Et~~~~~~l~~ag~GvigTlHA~sa~~Ai~Rl~~~v~lg~i~~iID~IV~ 386 (602)
T PRK13764 326 DYTIYDEMRKTEDFKIFADMRLAGVGMVGVVHATRPIDAIQRFIGRVELGMIPQIVDTVIF 386 (602)
T ss_pred CEEEECCCCCHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHhhhhhchHHHhhcEEEE
Confidence 99999999999887777666677889999999999999887752 1111123898888
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.2e-14 Score=123.02 Aligned_cols=145 Identities=15% Similarity=0.125 Sum_probs=98.0
Q ss_pred eec-cEEEEEeCCCchHHHHHHHHHHhccccCCC----------------------eEEEEcCCcccCCCCCCccc-ccc
Q 026207 24 IIF-DFFLSYFRPGVGKTTVMREIARVLSDEFQK----------------------RVVIVDTSNEIGGDGDIPHS-AIG 79 (241)
Q Consensus 24 ~~~-g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------------~v~~i~~~~e~~~~~~~~~~-~~~ 79 (241)
.+. |++.|+|++||||||++++++|+..|+.|. ++.|+.+...+..+..+... ..|
T Consensus 21 ~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~YG 100 (352)
T COG4148 21 LPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYG 100 (352)
T ss_pred CCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchhhh
Confidence 344 799999999999999999999999988432 33343322222111000000 000
Q ss_pred c---------------------hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHH---HH----H-HHHhCCc
Q 026207 80 T---------------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH---AC----R-SIAERGV 130 (241)
Q Consensus 80 ~---------------------~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~---~~----~-~~~~~g~ 130 (241)
. -++-..+|++.+|++++.+++...|+++++|||-+.+|.. ++ . ...+.++
T Consensus 101 ~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~I 180 (352)
T COG4148 101 MWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINI 180 (352)
T ss_pred hcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCC
Confidence 0 0123446788999999999999999999999999998872 11 1 2345678
Q ss_pred EEEEeecCCChhhhhcCCccccccccccEEEe-CChHHHHHHHHHhhhcc
Q 026207 131 MLIGTAHGEWLENIIKNPILSDLIGGVDTVTL-GDEEARARRCQKSILER 179 (241)
Q Consensus 131 ~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~-~~~~~~~~~~~~~~k~r 179 (241)
.|+.++|..+ ++.++ +|+|++ .++...+.+..+++.++
T Consensus 181 PIlYVSHS~~--------Ev~RL---Ad~vV~le~GkV~A~g~~e~v~~~ 219 (352)
T COG4148 181 PILYVSHSLD--------EVLRL---ADRVVVLENGKVKASGPLEEVWGS 219 (352)
T ss_pred CEEEEecCHH--------HHHhh---hheEEEecCCeEEecCcHHHHhcC
Confidence 8999999997 78888 999888 55443333555555544
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.2e-14 Score=137.25 Aligned_cols=138 Identities=12% Similarity=0.066 Sum_probs=87.8
Q ss_pred CccccceeeEEEEEeEEeeCcce--eecc-EEEEEeCCCchHHHHHHHHHHhccccCCC-------eEEEEcCCc-ccCC
Q 026207 1 MLRLRNVFLLIVKFFYALYSINK--IIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK-------RVVIVDTSN-EIGG 69 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~~--~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-------~v~~i~~~~-e~~~ 69 (241)
||.++|+..-. .-+.++..++ +..| .++|+||||||||||++.|+|.++++.|. ++.|+.+.. ....
T Consensus 1 ~i~i~nls~~~--g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~ 78 (638)
T PRK10636 1 MIVFSSLQIRR--GVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQ 78 (638)
T ss_pred CEEEEEEEEEe--CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCC
Confidence 78888885221 0123444432 3333 89999999999999999999998877543 222333210 0000
Q ss_pred C--CCCcc------------------------------------c-----------cccc-----hhhcCCCCCcccHHH
Q 026207 70 D--GDIPH------------------------------------S-----------AIGT-----ARRMQVPEPSLQHKV 95 (241)
Q Consensus 70 ~--~~~~~------------------------------------~-----------~~~~-----~~~~~~~~~~~~~~~ 95 (241)
. ..+.+ . .++. ...+..+|+|+++++
T Consensus 79 ~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv 158 (638)
T PRK10636 79 PALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRL 158 (638)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHH
Confidence 0 00000 0 0000 001233567889999
Q ss_pred HHHHHHhcCCcEEEEcCCCCHHhHHHHH----HHHhCCcEEEEeecCCC
Q 026207 96 MIEAVENHMPEVIIVDEIGTEAEAHACR----SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 96 ~~~~~l~~~p~vlilDE~~~~~d~~~~~----~~~~~g~~vi~t~H~~~ 140 (241)
.+++++..+|++++||||++++|+.... .....+.+||+++|...
T Consensus 159 ~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~ 207 (638)
T PRK10636 159 NLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRD 207 (638)
T ss_pred HHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 9999999999999999999999996554 22344678999999987
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.4e-14 Score=133.41 Aligned_cols=149 Identities=16% Similarity=0.162 Sum_probs=94.2
Q ss_pred CccccceeeEEEEEeEEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccc--cCCC-------------------
Q 026207 1 MLRLRNVFLLIVKFFYALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSD--EFQK------------------- 56 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~--~~g~------------------- 56 (241)
||+++|+..-.- -+.++..+ .+..| +++|+||||||||||++.|++.+++ ..|.
T Consensus 1 ~l~i~~l~~~~~--~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 1 LLEMKGIVKTFG--GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78 (500)
T ss_pred CEEEEeEEEEeC--CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 577788753211 12244443 33444 8999999999999999999999875 3221
Q ss_pred eEEEEcCCcccCCC---------CC--------Ccccc-----------ccc---h--hhcCCCCCcccHHHHHHHHHhc
Q 026207 57 RVVIVDTSNEIGGD---------GD--------IPHSA-----------IGT---A--RRMQVPEPSLQHKVMIEAVENH 103 (241)
Q Consensus 57 ~v~~i~~~~e~~~~---------~~--------~~~~~-----------~~~---~--~~~~~~~~~~~~~~~~~~~l~~ 103 (241)
.+.|+.+....... .. ..... .+. . .....+|+|+++++.+++++..
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~ 158 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNK 158 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhh
Confidence 23444322111100 00 00000 000 0 1123467788999999999999
Q ss_pred CCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 104 MPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 104 ~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+|+++++|||++++|+.... ...+.|.++|+++|... .+.++ ||+|++
T Consensus 159 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~--------~~~~~---~d~i~~ 213 (500)
T TIGR02633 159 QARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN--------EVKAV---CDTICV 213 (500)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH--------HHHHh---CCEEEE
Confidence 99999999999999995432 33456899999999886 44555 666665
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.6e-14 Score=117.23 Aligned_cols=121 Identities=14% Similarity=0.126 Sum_probs=77.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcc---ccCCCeEEEEcCCcccC-------CC-CCCcc-----------ccccc-----
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLS---DEFQKRVVIVDTSNEIG-------GD-GDIPH-----------SAIGT----- 80 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~---~~~g~~v~~i~~~~e~~-------~~-~~~~~-----------~~~~~----- 80 (241)
+++|+||||||||||++.|++..+ +..|. ++++ +..+. .. ...++ ..+..
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~--i~i~-g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~ 111 (202)
T cd03233 35 MVLVLGRPGSGCSTLLKALANRTEGNVSVEGD--IHYN-GIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK 111 (202)
T ss_pred EEEEECCCCCCHHHHHHHhcccCCCCCCcceE--EEEC-CEECccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc
Confidence 899999999999999999999987 45332 2332 11110 00 00010 00100
Q ss_pred -hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhC-CcEEEE-eecCCChhhhhcCCcc
Q 026207 81 -ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAER-GVMLIG-TAHGEWLENIIKNPIL 150 (241)
Q Consensus 81 -~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~-g~~vi~-t~H~~~~~~~~~~p~l 150 (241)
......+|.+++++..+++++..+|+++++|||++++|+.... +..+. +.++++ +.|..+ .+
T Consensus 112 ~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~--------~~ 183 (202)
T cd03233 112 GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASD--------EI 183 (202)
T ss_pred cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHH--------HH
Confidence 0122346778899999999999999999999999999995432 33333 566444 455543 44
Q ss_pred ccccccccEEEe
Q 026207 151 SDLIGGVDTVTL 162 (241)
Q Consensus 151 ~~l~~~~d~V~~ 162 (241)
.++ ||++++
T Consensus 184 ~~~---~d~i~~ 192 (202)
T cd03233 184 YDL---FDKVLV 192 (202)
T ss_pred HHh---CCeEEE
Confidence 555 788776
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.5e-14 Score=129.34 Aligned_cols=125 Identities=18% Similarity=0.167 Sum_probs=82.4
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCC----------------------eEEEEcCCcccCCCCCCccc-ccc----
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQK----------------------RVVIVDTSNEIGGDGDIPHS-AIG---- 79 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------------~v~~i~~~~e~~~~~~~~~~-~~~---- 79 (241)
.+++|+||||||||||++.|++..+++.|. ++.|+.+...+.....+... ..+
T Consensus 24 ei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~ 103 (354)
T TIGR02142 24 GVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRA 103 (354)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHHHHHHhhcc
Confidence 389999999999999999999999876442 11222211111000000000 000
Q ss_pred -------c----h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHh-CCc
Q 026207 80 -------T----A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAE-RGV 130 (241)
Q Consensus 80 -------~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~-~g~ 130 (241)
. . .....+|+|++|+..+++++..+|+++++|||++++|+.... +... .|.
T Consensus 104 ~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~ 183 (354)
T TIGR02142 104 RPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGI 183 (354)
T ss_pred ChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCC
Confidence 0 0 011235667899999999999999999999999999995432 3333 489
Q ss_pred EEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 131 MLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 131 ~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++|+++|..+ .+..+ +|++++
T Consensus 184 tiiivtH~~~--------~~~~~---~d~i~~ 204 (354)
T TIGR02142 184 PILYVSHSLQ--------EVLRL---ADRVVV 204 (354)
T ss_pred EEEEEecCHH--------HHHHh---CCEEEE
Confidence 9999999886 45556 777766
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.3e-14 Score=118.76 Aligned_cols=124 Identities=15% Similarity=0.122 Sum_probs=81.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCCCCCccc------c--cc--
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGDGDIPHS------A--IG-- 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~~~~~~~------~--~~-- 79 (241)
+++|.||||||||||++.+++..++..|. .+.|+.+...+.....+... . ..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~ 108 (242)
T cd03295 29 FLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKE 108 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHcCCCHH
Confidence 89999999999999999999998876442 12233221111100000000 0 00
Q ss_pred ----c----hhh------------cCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHh-CCcE
Q 026207 80 ----T----ARR------------MQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAE-RGVM 131 (241)
Q Consensus 80 ----~----~~~------------~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~-~g~~ 131 (241)
. ... ...+|++++++..+++++..+|+++++|||++++|+.... .... .|.+
T Consensus 109 ~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~t 188 (242)
T cd03295 109 KIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKT 188 (242)
T ss_pred HHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCE
Confidence 0 001 1224557899999999999999999999999999995432 3333 4889
Q ss_pred EEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 132 LIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 132 vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+|+++|... .+..+ ||+|+.
T Consensus 189 vii~sH~~~--------~~~~~---~d~i~~ 208 (242)
T cd03295 189 IVFVTHDID--------EAFRL---ADRIAI 208 (242)
T ss_pred EEEEecCHH--------HHHHh---CCEEEE
Confidence 999999875 45556 788776
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.5e-14 Score=125.10 Aligned_cols=113 Identities=19% Similarity=0.240 Sum_probs=75.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcc--cCCCCC------------Ccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNE--IGGDGD------------IPH 75 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e--~~~~~~------------~~~ 75 (241)
+++|.||||||||||++.|++..++..|. .+.|+.+... +..... ...
T Consensus 35 ~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~ 114 (277)
T PRK13642 35 WVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPR 114 (277)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHcCCCH
Confidence 89999999999999999999999877543 1222221110 000000 000
Q ss_pred ccc-cc----h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHh-CCcEE
Q 026207 76 SAI-GT----A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAE-RGVML 132 (241)
Q Consensus 76 ~~~-~~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~-~g~~v 132 (241)
... .. . .....+|++++++..+++++..+|+++|+|||++++|+.... ...+ .|.++
T Consensus 115 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~ti 194 (277)
T PRK13642 115 EEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTV 194 (277)
T ss_pred HHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 000 00 0 012235667799999999999999999999999999995432 3333 48999
Q ss_pred EEeecCCC
Q 026207 133 IGTAHGEW 140 (241)
Q Consensus 133 i~t~H~~~ 140 (241)
|.++|..+
T Consensus 195 il~sH~~~ 202 (277)
T PRK13642 195 LSITHDLD 202 (277)
T ss_pred EEEeCCHH
Confidence 99999986
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.4e-14 Score=120.12 Aligned_cols=124 Identities=19% Similarity=0.173 Sum_probs=82.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC-----------------eEEEEc-CCcccCCCCCCc------ccccc----
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK-----------------RVVIVD-TSNEIGGDGDIP------HSAIG---- 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-----------------~v~~i~-~~~e~~~~~~~~------~~~~~---- 79 (241)
+++|+||||||||||++.|++.+++..|. ++.|+. +...+.....+. ....+
T Consensus 49 ~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~ 128 (236)
T cd03267 49 IVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPA 128 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHHHHHHHHHHHcCCCHH
Confidence 89999999999999999999998776442 122322 111110000000 00000
Q ss_pred -------c-h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHH-hCCcEEE
Q 026207 80 -------T-A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIA-ERGVMLI 133 (241)
Q Consensus 80 -------~-~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~-~~g~~vi 133 (241)
. . .....+|++++++..+++++..+|+++++|||++++|+.... +.. +.|.++|
T Consensus 129 ~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii 208 (236)
T cd03267 129 RFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVL 208 (236)
T ss_pred HHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEE
Confidence 0 0 011235667899999999999999999999999999995433 222 3478999
Q ss_pred EeecCCChhhhhcCCccccccccccEEEe
Q 026207 134 GTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 134 ~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+++|... .+..+ ||+++.
T Consensus 209 ivsH~~~--------~~~~~---~d~i~~ 226 (236)
T cd03267 209 LTSHYMK--------DIEAL---ARRVLV 226 (236)
T ss_pred EEecCHH--------HHHHh---CCEEEE
Confidence 9999986 55666 788776
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.4e-14 Score=135.69 Aligned_cols=124 Identities=16% Similarity=0.206 Sum_probs=83.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC---------------------eEEEEcCCcc--cCCCCCC-----------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK---------------------RVVIVDTSNE--IGGDGDI----------- 73 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~---------------------~v~~i~~~~e--~~~~~~~----------- 73 (241)
++.|+||||||||||+++|++.+++..|. ++.|+.+... +.....+
T Consensus 352 ~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~ 431 (623)
T PRK10261 352 TLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVH 431 (623)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHc
Confidence 89999999999999999999998766332 2333332210 1000000
Q ss_pred ---cccc-----------ccc-----hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHH-
Q 026207 74 ---PHSA-----------IGT-----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIA- 126 (241)
Q Consensus 74 ---~~~~-----------~~~-----~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~- 126 (241)
.... ++. ......+|+|++|++.+++++..+|++||+|||++++|+.... ...
T Consensus 432 ~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~ 511 (623)
T PRK10261 432 GLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQR 511 (623)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 0000 000 0112345668899999999999999999999999999994332 333
Q ss_pred hCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 127 ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 127 ~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+.|.++|+++|..+ .+.++ ||+|++
T Consensus 512 ~~g~tvi~isHdl~--------~v~~~---~dri~v 536 (623)
T PRK10261 512 DFGIAYLFISHDMA--------VVERI---SHRVAV 536 (623)
T ss_pred hcCCEEEEEeCCHH--------HHHHh---CCEEEE
Confidence 34899999999886 55666 788776
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.5e-14 Score=114.49 Aligned_cols=113 Identities=16% Similarity=0.165 Sum_probs=74.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC-----------------eEEEEcCCcccCCCCCCcc------cccc--c--
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK-----------------RVVIVDTSNEIGGDGDIPH------SAIG--T-- 80 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-----------------~v~~i~~~~e~~~~~~~~~------~~~~--~-- 80 (241)
+++|+||||||||||++.+++..++..|. .+.|+.+...+.....+.. .... .
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~ 107 (198)
T TIGR01189 28 ALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRT 107 (198)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEeccCcccccCCcHHHHHHHHHHHcCCcHHH
Confidence 89999999999999999999998777442 1223322111100000000 0000 0
Q ss_pred ----h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCC
Q 026207 81 ----A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGE 139 (241)
Q Consensus 81 ----~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~ 139 (241)
. .....+|++++++..+++++..+|+++++|||++++|+.... ...+.|.++|.++|..
T Consensus 108 ~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~ 187 (198)
T TIGR01189 108 IEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQD 187 (198)
T ss_pred HHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccc
Confidence 0 012235667799999999999999999999999999984332 3345688999999976
Q ss_pred C
Q 026207 140 W 140 (241)
Q Consensus 140 ~ 140 (241)
.
T Consensus 188 ~ 188 (198)
T TIGR01189 188 L 188 (198)
T ss_pred c
Confidence 4
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.9e-14 Score=119.66 Aligned_cols=124 Identities=19% Similarity=0.209 Sum_probs=82.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC----------------eEEEEcCCcccCCCCCCc---c---ccc-------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK----------------RVVIVDTSNEIGGDGDIP---H---SAI------- 78 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------~v~~i~~~~e~~~~~~~~---~---~~~------- 78 (241)
.++|.||||||||||++.+++..++..|. .+.++.+.........+. . ...
T Consensus 27 ~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~ 106 (235)
T cd03299 27 YFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEI 106 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHHHHHHHcCCCHHHH
Confidence 89999999999999999999998877542 123333221111100000 0 000
Q ss_pred ----c-ch----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHH-hCCcEEEEe
Q 026207 79 ----G-TA----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIA-ERGVMLIGT 135 (241)
Q Consensus 79 ----~-~~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~-~~g~~vi~t 135 (241)
. .. .....+|++++++..+++++..+|+++++|||++++|+.... ... +.|.+++.+
T Consensus 107 ~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~ 186 (235)
T cd03299 107 ERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHV 186 (235)
T ss_pred HHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 0 00 012235678899999999999999999999999999995432 222 248999999
Q ss_pred ecCCChhhhhcCCccccccccccEEEe
Q 026207 136 AHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 136 ~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+|... .+.++ ||+++.
T Consensus 187 tH~~~--------~~~~~---~d~i~~ 202 (235)
T cd03299 187 THDFE--------EAWAL---ADKVAI 202 (235)
T ss_pred ecCHH--------HHHHh---CCEEEE
Confidence 99875 45555 787776
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.7e-14 Score=122.04 Aligned_cols=64 Identities=14% Similarity=0.173 Sum_probs=51.7
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|+|++++..+++++..+|+++++|||++++|+.... .. ..+.++|+++|... .+..+ ||+
T Consensus 165 LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tiii~tH~~~--------~~~~~---~d~ 232 (268)
T PRK14248 165 LSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITEL-KEEYSIIIVTHNMQ--------QALRV---SDR 232 (268)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHH-hcCCEEEEEEeCHH--------HHHHh---CCE
Confidence 5667899999999999999999999999999995433 22 23688999999986 45566 788
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
|+.
T Consensus 233 v~~ 235 (268)
T PRK14248 233 TAF 235 (268)
T ss_pred EEE
Confidence 776
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.3e-14 Score=122.67 Aligned_cols=64 Identities=14% Similarity=0.222 Sum_probs=51.3
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|++++++..+++++..+|+++++|||++++|+.... ... .+.++|+++|... .+..+ ||+
T Consensus 156 LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~--------~~~~~---~d~ 223 (259)
T PRK14274 156 LSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLK-EKYTIVIVTHNMQ--------QAARV---SDQ 223 (259)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEEcCHH--------HHHHh---CCE
Confidence 4567899999999999999999999999999995432 222 3688999999876 45566 888
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
+++
T Consensus 224 i~~ 226 (259)
T PRK14274 224 TAF 226 (259)
T ss_pred EEE
Confidence 776
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.1e-14 Score=114.28 Aligned_cols=114 Identities=21% Similarity=0.272 Sum_probs=79.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC----CCC-------ccc------ccc-------ch--
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD----GDI-------PHS------AIG-------TA-- 81 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~----~~~-------~~~------~~~-------~~-- 81 (241)
++++.||+|||||||++.+++.+.|..|. +.++ +..+.++ +.+ |.. .++ .+
T Consensus 33 ~vv~lGpSGcGKTTLLnl~AGf~~P~~G~--i~l~-~r~i~gPgaergvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R 109 (259)
T COG4525 33 LVVVLGPSGCGKTTLLNLIAGFVTPSRGS--IQLN-GRRIEGPGAERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQR 109 (259)
T ss_pred EEEEEcCCCccHHHHHHHHhcCcCcccce--EEEC-CEeccCCCccceeEeccCccchhhHHHHHHHHHHHhcCCCHHHH
Confidence 89999999999999999999999988433 3333 2111111 000 000 000 00
Q ss_pred ------------------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHH--------HHHHhCCcEEEEe
Q 026207 82 ------------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC--------RSIAERGVMLIGT 135 (241)
Q Consensus 82 ------------------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~--------~~~~~~g~~vi~t 135 (241)
..+..+|++++|++.+++++..+|+++++|||.+.+|+-.. ..+..+|+.++..
T Consensus 110 ~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lli 189 (259)
T COG4525 110 REIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLI 189 (259)
T ss_pred HHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEE
Confidence 12334678999999999999999999999999999999322 2456789999999
Q ss_pred ecCCChhhhh
Q 026207 136 AHGEWLENII 145 (241)
Q Consensus 136 ~H~~~~~~~~ 145 (241)
+|... +.++
T Consensus 190 TH~ie-EAlf 198 (259)
T COG4525 190 THDIE-EALF 198 (259)
T ss_pred eccHH-HHHh
Confidence 99986 4443
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.9e-14 Score=121.48 Aligned_cols=64 Identities=17% Similarity=0.163 Sum_probs=52.1
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|++++++..+++++..+|+++++|||++++|+.... .. ..+.++|+++|..+ .+.++ ||+
T Consensus 148 LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tilivsh~~~--------~~~~~---~d~ 215 (251)
T PRK14249 148 LSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQEL-KQNYTIAIVTHNMQ--------QAARA---SDW 215 (251)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCEEEEEeCCHH--------HHHhh---CCE
Confidence 5667899999999999999999999999999985432 33 35789999999886 55566 788
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
+++
T Consensus 216 i~~ 218 (251)
T PRK14249 216 TGF 218 (251)
T ss_pred EEE
Confidence 876
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.54 E-value=4e-14 Score=120.24 Aligned_cols=55 Identities=18% Similarity=0.128 Sum_probs=46.2
Q ss_pred CCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCC
Q 026207 86 VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~ 140 (241)
.+|++++++..+++++..+|+++++|||++++|+.... .....|.++|+++|...
T Consensus 145 ~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~ 206 (248)
T PRK09580 145 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR 206 (248)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 36778899999999999999999999999999995433 33445789999999875
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=3e-14 Score=136.31 Aligned_cols=124 Identities=15% Similarity=0.220 Sum_probs=84.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC-------eEEEEcCCc-c-cCCCCCC--------ccc-------c---ccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK-------RVVIVDTSN-E-IGGDGDI--------PHS-------A---IGT 80 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-------~v~~i~~~~-e-~~~~~~~--------~~~-------~---~~~ 80 (241)
.++|+||||||||||++.|++.++++.|. ++.|+.+.. . +...... +.. . ++.
T Consensus 340 ~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l 419 (638)
T PRK10636 340 RIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGF 419 (638)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCC
Confidence 89999999999999999999999876442 455665421 1 1111000 000 0 000
Q ss_pred -----hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHHH----HHhCCcEEEEeecCCChhhhhcCCccc
Q 026207 81 -----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRS----IAERGVMLIGTAHGEWLENIIKNPILS 151 (241)
Q Consensus 81 -----~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~~----~~~~g~~vi~t~H~~~~~~~~~~p~l~ 151 (241)
...+..+|+|+++++.++.++..+|+++|+|||++++|+..... ...-+.+||+++|... .+.
T Consensus 420 ~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~gtvi~vSHd~~--------~~~ 491 (638)
T PRK10636 420 QGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEGALVVVSHDRH--------LLR 491 (638)
T ss_pred ChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCeEEEEeCCHH--------HHH
Confidence 01234467788999999999999999999999999999965431 1222448999999886 555
Q ss_pred cccccccEEEe
Q 026207 152 DLIGGVDTVTL 162 (241)
Q Consensus 152 ~l~~~~d~V~~ 162 (241)
.+ ||+|+.
T Consensus 492 ~~---~d~i~~ 499 (638)
T PRK10636 492 ST---TDDLYL 499 (638)
T ss_pred Hh---CCEEEE
Confidence 56 777766
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.8e-14 Score=124.41 Aligned_cols=65 Identities=20% Similarity=0.272 Sum_probs=52.8
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHh-CCcEEEEeecCCChhhhhcCCcccccccccc
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVD 158 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~-~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d 158 (241)
+|+|++|++++++++..+|++||+|||++++|+.... ...+ .|.++|+++|... .+..+ ||
T Consensus 159 LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~--------~v~~~---~d 227 (330)
T PRK15093 159 LTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ--------MLSQW---AD 227 (330)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH--------HHHHh---CC
Confidence 5668899999999999999999999999999994432 3333 4899999999987 55556 77
Q ss_pred EEEe
Q 026207 159 TVTL 162 (241)
Q Consensus 159 ~V~~ 162 (241)
+|++
T Consensus 228 ri~v 231 (330)
T PRK15093 228 KINV 231 (330)
T ss_pred EEEE
Confidence 7766
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.1e-14 Score=132.81 Aligned_cols=67 Identities=22% Similarity=0.255 Sum_probs=52.6
Q ss_pred CCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHh-CCcEEEEeecCCChhhhhcCCcccccccc
Q 026207 85 QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGG 156 (241)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~-~g~~vi~t~H~~~~~~~~~~p~l~~l~~~ 156 (241)
..+|+|++|++.+++++.++|+++++|||++++|+.... .... .|.++|+++|... .+..+
T Consensus 155 ~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~--------~~~~~--- 223 (529)
T PRK15134 155 HQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLS--------IVRKL--- 223 (529)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHH--------HHHHh---
Confidence 345678899999999999999999999999999995442 3333 4899999999986 44445
Q ss_pred ccEEEe
Q 026207 157 VDTVTL 162 (241)
Q Consensus 157 ~d~V~~ 162 (241)
||+|+.
T Consensus 224 ~dri~~ 229 (529)
T PRK15134 224 ADRVAV 229 (529)
T ss_pred cCEEEE
Confidence 666655
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.5e-14 Score=134.20 Aligned_cols=124 Identities=15% Similarity=0.196 Sum_probs=85.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCC-------CeEEEEcCCcc--cCCCCCC---------c---cc-------ccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQ-------KRVVIVDTSNE--IGGDGDI---------P---HS-------AIG 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g-------~~v~~i~~~~e--~~~~~~~---------~---~~-------~~~ 79 (241)
+++|.||||||||||++.|++..++..| .++.|+.+... +.....+ . .. .++
T Consensus 347 ~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~ 426 (530)
T PRK15064 347 RLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLL 426 (530)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcC
Confidence 8999999999999999999999877643 23556653321 1110000 0 00 000
Q ss_pred c-----hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH----HHHhCCcEEEEeecCCChhhhhcCCcc
Q 026207 80 T-----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR----SIAERGVMLIGTAHGEWLENIIKNPIL 150 (241)
Q Consensus 80 ~-----~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~----~~~~~g~~vi~t~H~~~~~~~~~~p~l 150 (241)
. ......+|+|++++..+++++..+|+++++|||++++|+.... ...+.+.++|+++|... .+
T Consensus 427 l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~--------~~ 498 (530)
T PRK15064 427 FSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKYEGTLIFVSHDRE--------FV 498 (530)
T ss_pred CChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCHH--------HH
Confidence 0 0123345678899999999999999999999999999996543 22223558999999986 55
Q ss_pred ccccccccEEEe
Q 026207 151 SDLIGGVDTVTL 162 (241)
Q Consensus 151 ~~l~~~~d~V~~ 162 (241)
..+ ||+++.
T Consensus 499 ~~~---~d~i~~ 507 (530)
T PRK15064 499 SSL---ATRIIE 507 (530)
T ss_pred HHh---CCEEEE
Confidence 666 788776
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.9e-14 Score=119.78 Aligned_cols=64 Identities=13% Similarity=0.181 Sum_probs=51.9
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|++++++..+++++..+|+++++|||++++|+.... .. ..|.++|+++|..+ .+.++ +|+
T Consensus 143 LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~tH~~~--------~~~~~---~d~ 210 (246)
T PRK14269 143 LSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKEL-SHNLSMIMVTHNMQ--------QGKRV---ADY 210 (246)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH-hCCCEEEEEecCHH--------HHHhh---CcE
Confidence 4667899999999999999999999999999995433 22 24889999999886 55566 788
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
++.
T Consensus 211 i~~ 213 (246)
T PRK14269 211 TAF 213 (246)
T ss_pred EEE
Confidence 776
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.7e-14 Score=121.47 Aligned_cols=126 Identities=13% Similarity=0.102 Sum_probs=84.0
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccc----cCCC----------------eEEEEcCCcc--cCCCCC-----------
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSD----EFQK----------------RVVIVDTSNE--IGGDGD----------- 72 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~----~~g~----------------~v~~i~~~~e--~~~~~~----------- 72 (241)
..+++|.||||||||||++.|++.+++ ..|. .+.|+.+... +.....
T Consensus 12 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~ 91 (230)
T TIGR02770 12 GEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMGNHAIETLRS 91 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHHHHHHHHHHH
Confidence 348999999999999999999999987 4332 2334432211 000000
Q ss_pred --Ccccc-------------cc-----chhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HH
Q 026207 73 --IPHSA-------------IG-----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SI 125 (241)
Q Consensus 73 --~~~~~-------------~~-----~~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~ 125 (241)
..... +. .......+|++++++..+++++..+|+++++|||++++|+.... +.
T Consensus 92 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~ 171 (230)
T TIGR02770 92 LGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLREL 171 (230)
T ss_pred cCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHH
Confidence 00000 00 00012235667899999999999999999999999999985432 33
Q ss_pred Hh-CCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 126 AE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 126 ~~-~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
.+ .|.++|+++|..+ .+..+ +|++++
T Consensus 172 ~~~~~~tiii~sH~~~--------~~~~~---~d~i~~ 198 (230)
T TIGR02770 172 RQLFGTGILLITHDLG--------VVARI---ADEVAV 198 (230)
T ss_pred HHhcCCEEEEEeCCHH--------HHHHh---CCEEEE
Confidence 33 4889999999886 55566 788877
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.1e-14 Score=122.25 Aligned_cols=64 Identities=17% Similarity=0.220 Sum_probs=51.8
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|++++++..+++++..+|+++|+|||++++|+.... ... .+.++|+++|..+ .+..+ ||+
T Consensus 162 LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~--------~~~~~---~d~ 229 (274)
T PRK14265 162 LSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELK-EQYTIIMVTHNMQ--------QASRV---ADW 229 (274)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH--------HHHHh---CCE
Confidence 5667899999999999999999999999999995432 333 3688999999986 55566 788
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
+++
T Consensus 230 i~~ 232 (274)
T PRK14265 230 TAF 232 (274)
T ss_pred EEE
Confidence 776
|
|
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.1e-14 Score=116.46 Aligned_cols=136 Identities=19% Similarity=0.177 Sum_probs=82.2
Q ss_pred CccccceeeEEEEEeEEeeCccee--ecc-EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEE-------cCCcccCCC
Q 026207 1 MLRLRNVFLLIVKFFYALYSINKI--IFD-FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIV-------DTSNEIGGD 70 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~~~--~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i-------~~~~e~~~~ 70 (241)
+|.++||+ ..|.-+.+++.++. ..| -+.|+||||||||||++.+++..+|..+. +..+ +...|+...
T Consensus 31 li~l~~v~--v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~-~~~~G~~~G~~~~~~elrk~ 107 (257)
T COG1119 31 LIELKNVS--VRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGD-VTLLGRRFGKGETIFELRKR 107 (257)
T ss_pred eEEecceE--EEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCc-eeeeeeeccCCcchHHHHHH
Confidence 36677775 45555555555432 222 59999999999999999999999886221 1111 000000000
Q ss_pred -CC----------------------------Ccc-----ccccc--------------hhhcCCCCCcccHHHHHHHHHh
Q 026207 71 -GD----------------------------IPH-----SAIGT--------------ARRMQVPEPSLQHKVMIEAVEN 102 (241)
Q Consensus 71 -~~----------------------------~~~-----~~~~~--------------~~~~~~~~~~~~~~~~~~~~l~ 102 (241)
+. ..+ ..... -+.+..+|.+.++++++++++.
T Consensus 108 IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv 187 (257)
T COG1119 108 IGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALV 187 (257)
T ss_pred hCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHh
Confidence 00 000 00000 0123445667799999999999
Q ss_pred cCCcEEEEcCCCCHHhHHHHH-------HHHh--CCcEEEEeecCC
Q 026207 103 HMPEVIIVDEIGTEAEAHACR-------SIAE--RGVMLIGTAHGE 139 (241)
Q Consensus 103 ~~p~vlilDE~~~~~d~~~~~-------~~~~--~g~~vi~t~H~~ 139 (241)
.+|+++|||||.+++|..... .... .+.++++++|..
T Consensus 188 ~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~ 233 (257)
T COG1119 188 KDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHA 233 (257)
T ss_pred cCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcch
Confidence 999999999999999995442 2222 255566666655
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.2e-14 Score=124.95 Aligned_cols=122 Identities=14% Similarity=0.119 Sum_probs=81.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcC-------CcccCCCCC-------------Cc-cccc--------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDT-------SNEIGGDGD-------------IP-HSAI-------- 78 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~-------~~e~~~~~~-------------~~-~~~~-------- 78 (241)
.++|+||||||||||+++++|.+++..|. +.++. ...+..... .. ....
T Consensus 52 ~~~liG~NGsGKSTLlk~L~Gl~~p~~G~--I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~ 129 (264)
T PRK13546 52 VIGLVGINGSGKSTLSNIIGGSLSPTVGK--VDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIE 129 (264)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCCceE--EEECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 79999999999999999999999887553 22221 111110000 00 0000
Q ss_pred --cc----hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHH-------HHHHhCCcEEEEeecCCChhhhh
Q 026207 79 --GT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC-------RSIAERGVMLIGTAHGEWLENII 145 (241)
Q Consensus 79 --~~----~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~-------~~~~~~g~~vi~t~H~~~~~~~~ 145 (241)
+. ......+|+|++++..+++++..+|+++++|||++++|+... ....+.|.++|+++|...
T Consensus 130 ~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~----- 204 (264)
T PRK13546 130 FSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLG----- 204 (264)
T ss_pred HcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-----
Confidence 00 001233567889999999999999999999999999998532 233456899999999876
Q ss_pred cCCccccccccccEEEe
Q 026207 146 KNPILSDLIGGVDTVTL 162 (241)
Q Consensus 146 ~~p~l~~l~~~~d~V~~ 162 (241)
.+..+ ||+|+.
T Consensus 205 ---~i~~~---~d~i~~ 215 (264)
T PRK13546 205 ---QVRQF---CTKIAW 215 (264)
T ss_pred ---HHHHH---cCEEEE
Confidence 44555 676655
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2e-14 Score=123.00 Aligned_cols=64 Identities=13% Similarity=0.186 Sum_probs=51.7
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|++++++..+++++..+|+++++|||++++|+.... +.. .|.++|+++|... .+.++ ||+
T Consensus 155 LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~-~~~tiiivsH~~~--------~~~~~---~d~ 222 (258)
T PRK14268 155 LSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLK-KDYTIVIVTHNMQ--------QAARI---SDY 222 (258)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-hCCEEEEEECCHH--------HHHHh---CCE
Confidence 5567899999999999999999999999999995432 232 4789999999886 45556 788
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
|++
T Consensus 223 i~~ 225 (258)
T PRK14268 223 TGF 225 (258)
T ss_pred EEE
Confidence 776
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.3e-14 Score=121.13 Aligned_cols=64 Identities=16% Similarity=0.236 Sum_probs=51.7
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|++++++..+++++..+|+++++|||++++|+.... ..+ .+.++|+++|... .+..+ ||+
T Consensus 149 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~--------~~~~~---~d~ 216 (252)
T PRK14272 149 LSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLK-KVTTIIIVTHNMH--------QAARV---SDT 216 (252)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH--------HHHHh---CCE
Confidence 5667899999999999999999999999999995432 233 4688999999886 55556 888
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
++.
T Consensus 217 i~~ 219 (252)
T PRK14272 217 TSF 219 (252)
T ss_pred EEE
Confidence 776
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.7e-14 Score=135.72 Aligned_cols=56 Identities=13% Similarity=0.088 Sum_probs=46.2
Q ss_pred CCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH----HHHhCCcEEEEeecCCC
Q 026207 85 QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR----SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~----~~~~~g~~vi~t~H~~~ 140 (241)
..+|+|+++++.+++++..+|+++++|||++.+|+.... .....+.+||+++|...
T Consensus 155 ~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~~ 214 (635)
T PRK11147 155 SSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRS 214 (635)
T ss_pred hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 346778899999999999999999999999999996554 22333568999999886
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.9e-14 Score=120.78 Aligned_cols=64 Identities=14% Similarity=0.148 Sum_probs=51.5
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|++++++..+++++..+|+++++|||++++|+.... +.. .+.++|.++|... .+..+ +|+
T Consensus 157 LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~--------~~~~~---~d~ 224 (260)
T PRK10744 157 LSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHNMQ--------QAARC---SDY 224 (260)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH--------HHHHh---CCE
Confidence 5668899999999999999999999999999995432 332 4678999999876 45556 788
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
++.
T Consensus 225 i~~ 227 (260)
T PRK10744 225 TAF 227 (260)
T ss_pred EEE
Confidence 776
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=99.53 E-value=1e-13 Score=116.85 Aligned_cols=123 Identities=19% Similarity=0.194 Sum_probs=82.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC----------------eEEEEcCCcccCCCCCCcccccc------------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK----------------RVVIVDTSNEIGGDGDIPHSAIG------------ 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------~v~~i~~~~e~~~~~~~~~~~~~------------ 79 (241)
+++|+||||+|||||++.|++.+++..|. .+.++.+.........+ ...+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~-~~nl~~~~~~~~~~~~~ 106 (232)
T cd03300 28 FFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTV-FENIAFGLRLKKLPKAE 106 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecccccCCCCcH-HHHHHHHHHhcCCCHHH
Confidence 89999999999999999999999877442 12222211111000000 00000
Q ss_pred ---c----hh----------hcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHh-CCcEEEE
Q 026207 80 ---T----AR----------RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAE-RGVMLIG 134 (241)
Q Consensus 80 ---~----~~----------~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~-~g~~vi~ 134 (241)
. .. ....+|.+++++..+++++..+|+++++|||++++|+.... ..++ .|.++|+
T Consensus 107 ~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii 186 (232)
T cd03300 107 IKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVF 186 (232)
T ss_pred HHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 0 00 11224557799999999999999999999999999994432 3333 4899999
Q ss_pred eecCCChhhhhcCCccccccccccEEEe
Q 026207 135 TAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 135 t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++|... .+.++ ||+++.
T Consensus 187 ~sh~~~--------~~~~~---~d~i~~ 203 (232)
T cd03300 187 VTHDQE--------EALTM---SDRIAV 203 (232)
T ss_pred EeCCHH--------HHHHh---cCEEEE
Confidence 999986 55566 788776
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.9e-14 Score=118.75 Aligned_cols=112 Identities=17% Similarity=0.158 Sum_probs=74.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCC--------CCCcc--cc--
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGD--------GDIPH--SA-- 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~--------~~~~~--~~-- 77 (241)
+++|+||||||||||++.+++..++..|. .+.|+.+...+... ..... ..
T Consensus 42 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~ 121 (226)
T cd03248 42 VTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVK 121 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEEecccHHHhhhHHHHhccccCCCCHHHHH
Confidence 89999999999999999999998876442 13333322111000 00000 00
Q ss_pred --------------c--cc----hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCc
Q 026207 78 --------------I--GT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGV 130 (241)
Q Consensus 78 --------------~--~~----~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~ 130 (241)
+ +. ......+|++++++..+++++..+|+++++|||++++|+.... ... .+.
T Consensus 122 ~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~ 200 (226)
T cd03248 122 EAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWP-ERR 200 (226)
T ss_pred HHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCC
Confidence 0 00 0012235667899999999999999999999999999985433 322 367
Q ss_pred EEEEeecCCC
Q 026207 131 MLIGTAHGEW 140 (241)
Q Consensus 131 ~vi~t~H~~~ 140 (241)
++|+++|...
T Consensus 201 tii~~sh~~~ 210 (226)
T cd03248 201 TVLVIAHRLS 210 (226)
T ss_pred EEEEEECCHH
Confidence 8999999986
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.9e-14 Score=119.52 Aligned_cols=126 Identities=20% Similarity=0.222 Sum_probs=83.6
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCC-------------eEEEEcCCcccCCC--CCC-----------------
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQK-------------RVVIVDTSNEIGGD--GDI----------------- 73 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-------------~v~~i~~~~e~~~~--~~~----------------- 73 (241)
..+++|.||||||||||++.+++..++..|. ++.|+.+....... ..+
T Consensus 6 Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~ 85 (223)
T TIGR03771 6 GELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIGWLRR 85 (223)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccccccccccC
Confidence 3489999999999999999999998876442 24444432111000 000
Q ss_pred cc-cc---ccc-hh----------hcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcE
Q 026207 74 PH-SA---IGT-AR----------RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVM 131 (241)
Q Consensus 74 ~~-~~---~~~-~~----------~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~ 131 (241)
+. .. ... .. ....+|.+++++..+++++..+|+++|+|||++++|+.... ...+.|.+
T Consensus 86 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~t 165 (223)
T TIGR03771 86 PCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTA 165 (223)
T ss_pred CcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCE
Confidence 00 00 000 00 12235567799999999999999999999999999995432 34456889
Q ss_pred EEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 132 LIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 132 vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+|+++|..+ .+.++ ||++++
T Consensus 166 vii~sH~~~--------~~~~~---~d~i~~ 185 (223)
T TIGR03771 166 ILMTTHDLA--------QAMAT---CDRVVL 185 (223)
T ss_pred EEEEeCCHH--------HHHHh---CCEEEE
Confidence 999999886 44555 666654
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.9e-14 Score=133.21 Aligned_cols=65 Identities=23% Similarity=0.238 Sum_probs=53.5
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|+|+++++.+++++..+|+++|+|||++++|+.... ...+.|.++|+++|... .+..+ ||+
T Consensus 410 LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~--------~~~~~---~d~ 478 (510)
T PRK09700 410 LSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELP--------EIITV---CDR 478 (510)
T ss_pred CChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH--------HHHhh---CCE
Confidence 5667899999999999999999999999999995332 33456899999999886 55666 888
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
+++
T Consensus 479 i~~ 481 (510)
T PRK09700 479 IAV 481 (510)
T ss_pred EEE
Confidence 776
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.4e-14 Score=132.78 Aligned_cols=124 Identities=17% Similarity=0.172 Sum_probs=84.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC-------------------eEEEEcCCc---ccCCCCCC------------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK-------------------RVVIVDTSN---EIGGDGDI------------ 73 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-------------------~v~~i~~~~---e~~~~~~~------------ 73 (241)
++.|+||||||||||++.|++.+++..|. .+.|+.+.. .+......
T Consensus 291 ~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~ 370 (510)
T PRK15439 291 ILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRR 370 (510)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhh
Confidence 89999999999999999999998766332 133443211 00000000
Q ss_pred c----cc-c----------ccc-----hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHH
Q 026207 74 P----HS-A----------IGT-----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIA 126 (241)
Q Consensus 74 ~----~~-~----------~~~-----~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~ 126 (241)
. .. . ++. ......+|+|++++..+++++..+|+++|+|||++++|+.... ...
T Consensus 371 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~ 450 (510)
T PRK15439 371 GFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIA 450 (510)
T ss_pred ccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHH
Confidence 0 00 0 000 0112336678899999999999999999999999999994432 334
Q ss_pred hCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 127 ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 127 ~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+.|.++|+++|..+ .+.++ ||++++
T Consensus 451 ~~g~tiIivsHd~~--------~i~~~---~d~i~~ 475 (510)
T PRK15439 451 AQNVAVLFISSDLE--------EIEQM---ADRVLV 475 (510)
T ss_pred hCCCEEEEECCCHH--------HHHHh---CCEEEE
Confidence 46899999999987 66677 888876
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.8e-14 Score=119.28 Aligned_cols=64 Identities=11% Similarity=0.215 Sum_probs=51.2
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|++++++..+++++..+|+++++|||++++|+.... ... .+.++|+++|... .+..+ ||+
T Consensus 150 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~--------~~~~~---~d~ 217 (253)
T PRK14267 150 LSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELK-KEYTIVLVTHSPA--------QAARV---SDY 217 (253)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-hCCEEEEEECCHH--------HHHhh---CCE
Confidence 4557799999999999999999999999999995432 222 3689999999886 45566 788
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
|++
T Consensus 218 i~~ 220 (253)
T PRK14267 218 VAF 220 (253)
T ss_pred EEE
Confidence 776
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.6e-14 Score=129.89 Aligned_cols=122 Identities=11% Similarity=0.139 Sum_probs=82.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCC---cccC------------CC-C-------CCccc----cc--
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTS---NEIG------------GD-G-------DIPHS----AI-- 78 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~---~e~~------------~~-~-------~~~~~----~~-- 78 (241)
+++|.||||||||||+++|++.+++..|. ++++.. ..+. .. . ..++. ++
T Consensus 52 i~~I~G~nGsGKSTLlr~L~Gl~~p~~G~--I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~ 129 (382)
T TIGR03415 52 ICVLMGLSGSGKSSLLRAVNGLNPVSRGS--VLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVAF 129 (382)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCCcE--EEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHHH
Confidence 79999999999999999999999887554 444410 0000 00 0 00100 00
Q ss_pred c-------------c----hh----------hcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------H
Q 026207 79 G-------------T----AR----------RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------S 124 (241)
Q Consensus 79 ~-------------~----~~----------~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~ 124 (241)
+ . .. ....+|++++|+..+++++..+|+++++|||++++|+.... .
T Consensus 130 ~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~ 209 (382)
T TIGR03415 130 GLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLE 209 (382)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHH
Confidence 0 0 00 11225667899999999999999999999999999995432 3
Q ss_pred HHh-CCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 125 IAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 125 ~~~-~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
... .|.++++++|..+ .+..+ +|+|++
T Consensus 210 l~~~~~~TII~iTHdl~--------e~~~l---~DrI~v 237 (382)
T TIGR03415 210 LQAKLNKTIIFVSHDLD--------EALKI---GNRIAI 237 (382)
T ss_pred HHHhcCCEEEEEeCCHH--------HHHHh---CCEEEE
Confidence 333 4899999999987 44555 676665
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.8e-14 Score=132.78 Aligned_cols=113 Identities=16% Similarity=0.250 Sum_probs=81.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCC-------CeEEEEcCCcccCCCCCCcc-------------------------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQ-------KRVVIVDTSNEIGGDGDIPH------------------------- 75 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g-------~~v~~i~~~~e~~~~~~~~~------------------------- 75 (241)
-+.|+|+|||||||||+.|+|...++.| .++.|+.+.........+..
T Consensus 31 riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~ 110 (530)
T COG0488 31 RIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLAD 110 (530)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhccc
Confidence 6999999999999999999999987743 35667764443322100000
Q ss_pred ----------------------c-------cccc---hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH
Q 026207 76 ----------------------S-------AIGT---ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR 123 (241)
Q Consensus 76 ----------------------~-------~~~~---~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~ 123 (241)
. .++. ...+..+|+|.+.++.++.++..+||+++||||++.+|..++.
T Consensus 111 ~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~ 190 (530)
T COG0488 111 PDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIE 190 (530)
T ss_pred chhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHH
Confidence 0 0000 1234556788999999999999999999999999999997776
Q ss_pred H----HHh-CCcEEEEeecCCCh
Q 026207 124 S----IAE-RGVMLIGTAHGEWL 141 (241)
Q Consensus 124 ~----~~~-~g~~vi~t~H~~~~ 141 (241)
. .++ .| ++|+++|....
T Consensus 191 WLe~~L~~~~g-tviiVSHDR~F 212 (530)
T COG0488 191 WLEDYLKRYPG-TVIVVSHDRYF 212 (530)
T ss_pred HHHHHHHhCCC-cEEEEeCCHHH
Confidence 2 222 45 89999998873
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.2e-14 Score=116.25 Aligned_cols=113 Identities=16% Similarity=0.233 Sum_probs=74.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC--------------------eEEEEcCCc--ccCCCCC------------C
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK--------------------RVVIVDTSN--EIGGDGD------------I 73 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~--------------------~v~~i~~~~--e~~~~~~------------~ 73 (241)
+++|+||||||||||++.+++..++..|. .+.|+.+.. .+..... .
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~~nl~~~~~~~~~ 99 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGL 99 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccccHHHHHHHHHHHcCC
Confidence 89999999999999999999998876442 122222111 0000000 0
Q ss_pred ccc----c-------ccc----hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcE
Q 026207 74 PHS----A-------IGT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVM 131 (241)
Q Consensus 74 ~~~----~-------~~~----~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~ 131 (241)
... . ++. ......+|++++++..+++++..+|+++++|||++++|+.... ..++.|.+
T Consensus 100 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~t 179 (190)
T TIGR01166 100 SEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMT 179 (190)
T ss_pred CHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCE
Confidence 000 0 000 0012234567799999999999999999999999999995432 34456889
Q ss_pred EEEeecCCC
Q 026207 132 LIGTAHGEW 140 (241)
Q Consensus 132 vi~t~H~~~ 140 (241)
+++++|..+
T Consensus 180 ili~sH~~~ 188 (190)
T TIGR01166 180 VVISTHDVD 188 (190)
T ss_pred EEEEeeccc
Confidence 999999875
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.5e-14 Score=119.44 Aligned_cols=64 Identities=13% Similarity=0.194 Sum_probs=50.6
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|++++++..+++++..+|+++++|||++++|+.... .. ..+.++|.++|... .+..+ ||+
T Consensus 149 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tviivsH~~~--------~~~~~---~d~ 216 (258)
T PRK14241 149 LSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINEL-KQDYTIVIVTHNMQ--------QAARV---SDQ 216 (258)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hcCCEEEEEecCHH--------HHHHh---CCE
Confidence 5567899999999999999999999999999985432 22 24688999999886 45555 777
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
++.
T Consensus 217 i~~ 219 (258)
T PRK14241 217 TAF 219 (258)
T ss_pred EEE
Confidence 765
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.8e-14 Score=120.81 Aligned_cols=64 Identities=16% Similarity=0.194 Sum_probs=51.5
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|++++++..+++++..+|+++++|||++++|+.... ... .+.++|+++|..+ .+..+ ||+
T Consensus 164 LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~-~~~tiiivtH~~~--------~~~~~---~d~ 231 (267)
T PRK14235 164 LSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELR-QNYTIVIVTHSMQ--------QAARV---SQR 231 (267)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHh-cCCeEEEEEcCHH--------HHHhh---CCE
Confidence 5667899999999999999999999999999995432 222 3678999999876 45566 788
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
+++
T Consensus 232 v~~ 234 (267)
T PRK14235 232 TAF 234 (267)
T ss_pred EEE
Confidence 776
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1e-13 Score=119.49 Aligned_cols=64 Identities=16% Similarity=0.203 Sum_probs=51.9
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|.+++++..+++++..+|+++++|||++++|+.... .. ..+.++|+++|... .+..+ ||+
T Consensus 155 LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~-~~~~tiiivtH~~~--------~~~~~---~d~ 222 (269)
T PRK14259 155 LSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHEL-KKNFTIVIVTHNMQ--------QAVRV---SDM 222 (269)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hcCCEEEEEeCCHH--------HHHHh---cCE
Confidence 5667899999999999999999999999999995432 22 34688999999876 55666 888
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
+++
T Consensus 223 i~~ 225 (269)
T PRK14259 223 TAF 225 (269)
T ss_pred EEE
Confidence 776
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.2e-14 Score=116.59 Aligned_cols=125 Identities=19% Similarity=0.194 Sum_probs=81.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcc---ccCCC---------------eEEEEcCCcccCCC-C-----------CC----
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLS---DEFQK---------------RVVIVDTSNEIGGD-G-----------DI---- 73 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~---~~~g~---------------~v~~i~~~~e~~~~-~-----------~~---- 73 (241)
+++|+||||||||||++.+++.++ +..|. .+.|+.+...+... . ..
T Consensus 35 ~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~ 114 (226)
T cd03234 35 VMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKS 114 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhccccc
Confidence 899999999999999999999987 55332 23333322111100 0 00
Q ss_pred ccc----cc-c-ch----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCc
Q 026207 74 PHS----AI-G-TA----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGV 130 (241)
Q Consensus 74 ~~~----~~-~-~~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~ 130 (241)
... .. . .. .....+|.+++++..+++++..+|+++++|||++++|+.... +..+.|.
T Consensus 115 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~ 194 (226)
T cd03234 115 SDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNR 194 (226)
T ss_pred chHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCC
Confidence 000 00 0 00 012235667799999999999999999999999999995432 3344588
Q ss_pred EEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 131 MLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 131 ~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++++++|... . .+.++ +|+++.
T Consensus 195 tiii~sh~~~-~------~~~~~---~d~i~~ 216 (226)
T cd03234 195 IVILTIHQPR-S------DLFRL---FDRILL 216 (226)
T ss_pred EEEEEecCCC-H------HHHHh---CCEEEE
Confidence 9999999872 0 45556 788776
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=4e-14 Score=120.59 Aligned_cols=64 Identities=16% Similarity=0.200 Sum_probs=51.3
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|.+++++..+++++..+|+++++|||++++|+.... ... .+.++|+++|..+ .+..+ ||+
T Consensus 149 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tii~~sH~~~--------~~~~~---~d~ 216 (252)
T PRK14239 149 LSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLK-DDYTMLLVTRSMQ--------QASRI---SDR 216 (252)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHh-hCCeEEEEECCHH--------HHHHh---CCE
Confidence 5667899999999999999999999999999995432 222 3678999999886 45556 788
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
+++
T Consensus 217 i~~ 219 (252)
T PRK14239 217 TGF 219 (252)
T ss_pred EEE
Confidence 776
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.6e-14 Score=119.27 Aligned_cols=64 Identities=16% Similarity=0.188 Sum_probs=50.9
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|.+++++..+++++..+|+++++|||++++|+.... ...+ +.++|+++|..+ .+..+ ||+
T Consensus 148 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~--------~~~~~---~d~ 215 (251)
T PRK14270 148 LSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ--------QASRV---SDY 215 (251)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH--------HHHHh---cCE
Confidence 5567799999999999999999999999999995432 3333 578999999876 55566 788
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
++.
T Consensus 216 v~~ 218 (251)
T PRK14270 216 TAF 218 (251)
T ss_pred EEE
Confidence 776
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.1e-14 Score=130.18 Aligned_cols=67 Identities=15% Similarity=0.228 Sum_probs=53.7
Q ss_pred CCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HH-HhCCcEEEEeecCCChhhhhcCCcccccccc
Q 026207 85 QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SI-AERGVMLIGTAHGEWLENIIKNPILSDLIGG 156 (241)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~-~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~ 156 (241)
..+|+|+++++.+++++..+|+++++|||++++|+.... .. ++.|.+||+++|... .+.++
T Consensus 167 ~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~--------~~~~~--- 235 (520)
T TIGR03269 167 RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPE--------VIEDL--- 235 (520)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH--------HHHHh---
Confidence 345678899999999999999999999999999995443 33 345899999999987 45555
Q ss_pred ccEEEe
Q 026207 157 VDTVTL 162 (241)
Q Consensus 157 ~d~V~~ 162 (241)
||+|+.
T Consensus 236 ~d~i~~ 241 (520)
T TIGR03269 236 SDKAIW 241 (520)
T ss_pred cCEEEE
Confidence 677666
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.8e-14 Score=121.49 Aligned_cols=64 Identities=13% Similarity=0.215 Sum_probs=52.0
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|++++++..+++++..+|+++++|||++++|+.... .. ..+.++|+++|..+ .+..+ ||+
T Consensus 147 LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tiiivtH~~~--------~~~~~---~d~ 214 (250)
T PRK14245 147 LSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHEL-KKDYTIVIVTHNMQ--------QAARV---SDK 214 (250)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEeCCHH--------HHHhh---CCE
Confidence 5667899999999999999999999999999995432 33 34789999999886 45566 888
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
+++
T Consensus 215 v~~ 217 (250)
T PRK14245 215 TAF 217 (250)
T ss_pred EEE
Confidence 776
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.6e-14 Score=118.33 Aligned_cols=65 Identities=17% Similarity=0.274 Sum_probs=51.6
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHh-CCcEEEEeecCCChhhhhcCCcccccccccc
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVD 158 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~-~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d 158 (241)
+|++++++..+++++..+|+++++|||++++|+.... ...+ .|.++|+++|..+ .+..+ +|
T Consensus 147 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~--------~~~~~---~d 215 (252)
T TIGR03005 147 LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG--------FAREF---AD 215 (252)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH--------HHHHh---cC
Confidence 4567799999999999999999999999999985432 3333 4899999999886 44555 77
Q ss_pred EEEe
Q 026207 159 TVTL 162 (241)
Q Consensus 159 ~V~~ 162 (241)
+++.
T Consensus 216 ~i~~ 219 (252)
T TIGR03005 216 RVCF 219 (252)
T ss_pred EEEE
Confidence 7766
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.9e-14 Score=134.06 Aligned_cols=65 Identities=22% Similarity=0.290 Sum_probs=53.1
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHH-hCCcEEEEeecCCChhhhhcCCcccccccccc
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVD 158 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~-~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d 158 (241)
+|+|++|++.+++++..+|++||+|||++++|+.... ... +.|.++|+++|... .+..+ ||
T Consensus 169 LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~--------~~~~~---ad 237 (623)
T PRK10261 169 LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMG--------VVAEI---AD 237 (623)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH--------HHHHh---CC
Confidence 5668899999999999999999999999999995422 333 34899999999986 55566 78
Q ss_pred EEEe
Q 026207 159 TVTL 162 (241)
Q Consensus 159 ~V~~ 162 (241)
+|++
T Consensus 238 ri~v 241 (623)
T PRK10261 238 RVLV 241 (623)
T ss_pred EEEE
Confidence 8777
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=99.52 E-value=9e-14 Score=114.81 Aligned_cols=113 Identities=11% Similarity=0.075 Sum_probs=76.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC-----eEEEEcCCcccCC---------CCCCccccc-------cc---h--
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK-----RVVIVDTSNEIGG---------DGDIPHSAI-------GT---A-- 81 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-----~v~~i~~~~e~~~---------~~~~~~~~~-------~~---~-- 81 (241)
+++|+||||||||||++.+++..++..|. ++.|+.+...+.. ......... +. .
T Consensus 33 ~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~ 112 (204)
T cd03250 33 LVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEI 112 (204)
T ss_pred EEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhccCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHh
Confidence 89999999999999999999999887553 2455543321110 000000000 00 0
Q ss_pred ----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH--------HHHhCCcEEEEeecCCC
Q 026207 82 ----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR--------SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 82 ----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~--------~~~~~g~~vi~t~H~~~ 140 (241)
.....+|.+++++..+++++..+|+++++|||++++|+.... .....|.++|+++|...
T Consensus 113 ~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~ 189 (204)
T cd03250 113 LPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQ 189 (204)
T ss_pred ccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHH
Confidence 011335668899999999999999999999999999995322 12234789999999875
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.9e-14 Score=136.77 Aligned_cols=140 Identities=12% Similarity=0.154 Sum_probs=92.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCC----------CCCc-cc--
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGD----------GDIP-HS-- 76 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~----------~~~~-~~-- 76 (241)
.++|+|++|||||||+|.+++...|..|. .|.|+.+..-+... .... .+
T Consensus 501 ~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~ 580 (709)
T COG2274 501 KVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEII 580 (709)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHH
Confidence 79999999999999999999999988553 23333322111100 0000 00
Q ss_pred ---------------cccchhhc----CCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH------HHHhCCcE
Q 026207 77 ---------------AIGTARRM----QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR------SIAERGVM 131 (241)
Q Consensus 77 ---------------~~~~~~~~----~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~------~~~~~g~~ 131 (241)
..|+-..+ ..+|+|++|+.++++++.++|.++++||+++.+|.+.-. .....|+|
T Consensus 581 ~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T 660 (709)
T COG2274 581 EAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRT 660 (709)
T ss_pred HHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCe
Confidence 00000011 125678899999999999999999999999999995433 22345799
Q ss_pred EEEeecCCChhhhhcCCccccccccccEEEe-CChHHHHHHHHHhhhcc
Q 026207 132 LIGTAHGEWLENIIKNPILSDLIGGVDTVTL-GDEEARARRCQKSILER 179 (241)
Q Consensus 132 vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~-~~~~~~~~~~~~~~k~r 179 (241)
+|..+|..+ .+.+ ||+|++ ..+....+++.+++.+.
T Consensus 661 ~I~IaHRl~--------ti~~----adrIiVl~~Gkiv~~gs~~ell~~ 697 (709)
T COG2274 661 VIIIAHRLS--------TIRS----ADRIIVLDQGKIVEQGSHEELLAQ 697 (709)
T ss_pred EEEEEccch--------Hhhh----ccEEEEccCCceeccCCHHHHHHh
Confidence 999999886 3443 799888 55544444566666554
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.4e-14 Score=126.06 Aligned_cols=120 Identities=22% Similarity=0.255 Sum_probs=86.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC----------CCCccccc--------------cc---
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD----------GDIPHSAI--------------GT--- 80 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~----------~~~~~~~~--------------~~--- 80 (241)
+-.|+|+||+|||||++.|.|.+.|+.|. ++++ +.+..-. +.+ +|.+ +.
T Consensus 32 IHaLLGENGAGKSTLm~iL~G~~~P~~Ge--I~v~-G~~v~~~sP~dA~~~GIGMV-hQHF~Lv~~lTV~ENiiLg~e~~ 107 (501)
T COG3845 32 IHALLGENGAGKSTLMKILFGLYQPDSGE--IRVD-GKEVRIKSPRDAIRLGIGMV-HQHFMLVPTLTVAENIILGLEPS 107 (501)
T ss_pred EEEEeccCCCCHHHHHHHHhCcccCCcce--EEEC-CEEeccCCHHHHHHcCCcEE-eeccccccccchhhhhhhcCccc
Confidence 78999999999999999999999999765 5554 3222100 000 0100 00
Q ss_pred ---------h--------h----------hcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHH-------HHHH
Q 026207 81 ---------A--------R----------RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC-------RSIA 126 (241)
Q Consensus 81 ---------~--------~----------~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~-------~~~~ 126 (241)
+ . .+.-++-+.+|++-+-.++..+|++||+|||++.+.|..+ +..+
T Consensus 108 ~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~ 187 (501)
T COG3845 108 KGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLA 187 (501)
T ss_pred cccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 0 0 1122334569999999999999999999999999988544 3667
Q ss_pred hCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 127 ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 127 ~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
..|++||..+|-.+ ++..+ ||++.+
T Consensus 188 ~~G~tIi~ITHKL~--------Ev~~i---aDrvTV 212 (501)
T COG3845 188 AEGKTIIFITHKLK--------EVMAI---ADRVTV 212 (501)
T ss_pred HCCCEEEEEeccHH--------HHHHh---hCeeEE
Confidence 78999999999987 66666 787776
|
|
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.4e-13 Score=120.80 Aligned_cols=115 Identities=17% Similarity=0.181 Sum_probs=83.6
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCC
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMP 105 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p 105 (241)
...++|+||+||||||+++++++.+++. .+++++++..|+.... +......................+..+++++|
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~~~--~~iv~ied~~El~~~~--~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~p 219 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIPKD--ERIITIEDTREIFLPH--PNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRP 219 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCCcc--ccEEEEcCccccCCCC--CCEEEEEecCCCCCcCccCHHHHHHHHhcCCC
Confidence 4589999999999999999999999876 5788898777764331 11100000111111235678889999999999
Q ss_pred cEEEEcCCCCHHhHHHHHHHHhCCcE-EEEeecCCChhhhh
Q 026207 106 EVIIVDEIGTEAEAHACRSIAERGVM-LIGTAHGEWLENII 145 (241)
Q Consensus 106 ~vlilDE~~~~~d~~~~~~~~~~g~~-vi~t~H~~~~~~~~ 145 (241)
+++++|||++.. ......+.++|+. +++|+|+.+..+.+
T Consensus 220 d~ii~gE~r~~e-~~~~l~a~~~g~~~~i~T~Ha~~~~~~~ 259 (308)
T TIGR02788 220 DRIILGELRGDE-AFDFIRAVNTGHPGSITTLHAGSPEEAF 259 (308)
T ss_pred CeEEEeccCCHH-HHHHHHHHhcCCCeEEEEEeCCCHHHHH
Confidence 999999999865 4445566678886 69999999966654
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >PRK13894 conjugal transfer ATPase TrbB; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.7e-13 Score=120.64 Aligned_cols=111 Identities=18% Similarity=0.193 Sum_probs=86.4
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhc---cccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHh
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVL---SDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVEN 102 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l---~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 102 (241)
.+.++|+|++||||||++++++..+ ++. .+++++++..|+... +.+. .++. ......+..++..+++
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~--~rivtIEd~~El~~~----~~~~---v~~~-~~~~~~~~~ll~~aLR 217 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEMVIQDPT--ERVFIIEDTGEIQCA----AENY---VQYH-TSIDVNMTALLKTTLR 217 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhcCCC--ceEEEEcCCCccccC----CCCE---EEEe-cCCCCCHHHHHHHHhc
Confidence 3479999999999999999999874 333 689999988887532 1111 0111 1235678899999999
Q ss_pred cCCcEEEEcCCCCHHhHHHHHHHHhCCcE-EEEeecCCChhhhhcC
Q 026207 103 HMPEVIIVDEIGTEAEAHACRSIAERGVM-LIGTAHGEWLENIIKN 147 (241)
Q Consensus 103 ~~p~vlilDE~~~~~d~~~~~~~~~~g~~-vi~t~H~~~~~~~~~~ 147 (241)
++||.|+++|+++.+ +..+.++.++|+. .++|+|++++.+++.+
T Consensus 218 ~~PD~IivGEiR~~E-a~~~l~A~~tGh~G~~tTiHa~s~~~ai~R 262 (319)
T PRK13894 218 MRPDRILVGEVRGPE-ALDLLMAWNTGHEGGAATLHANNAKAGLDR 262 (319)
T ss_pred CCCCEEEEeccCCHH-HHHHHHHHHcCCCceEEEECCCCHHHHHHH
Confidence 999999999999986 5556788899997 8999999998887753
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.7e-14 Score=122.32 Aligned_cols=64 Identities=16% Similarity=0.207 Sum_probs=51.5
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|++++++..+++++..+|+++++|||++++|+.... ... .+.++|+++|..+ .+..+ ||+
T Consensus 168 LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivsH~~~--------~i~~~---~d~ 235 (271)
T PRK14238 168 LSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELK-KDYSIIIVTHNMQ--------QAARI---SDK 235 (271)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHH-cCCEEEEEEcCHH--------HHHHh---CCE
Confidence 5667899999999999999999999999999995432 333 3689999999886 45556 787
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
++.
T Consensus 236 i~~ 238 (271)
T PRK14238 236 TAF 238 (271)
T ss_pred EEE
Confidence 766
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.4e-14 Score=117.62 Aligned_cols=112 Identities=15% Similarity=0.152 Sum_probs=74.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCCC-----CC-----ccccc-
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGDG-----DI-----PHSAI- 78 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~~-----~~-----~~~~~- 78 (241)
+++|+||||||||||++.+++..++..|. .+.|+.+...+.... .. .....
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~ 109 (234)
T cd03251 30 TVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVE 109 (234)
T ss_pred EEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeeccccHHHHhhccCCCCCHHHHH
Confidence 89999999999999999999999877442 122332111110000 00 00000
Q ss_pred ------cc---h------------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCc
Q 026207 79 ------GT---A------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGV 130 (241)
Q Consensus 79 ------~~---~------------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~ 130 (241)
+. . .....+|.+++++..+++++..+|+++++|||++++|+.... .. ..+.
T Consensus 110 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~-~~~~ 188 (234)
T cd03251 110 EAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERL-MKNR 188 (234)
T ss_pred HHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCC
Confidence 00 0 012235667899999999999999999999999999995432 22 2478
Q ss_pred EEEEeecCCC
Q 026207 131 MLIGTAHGEW 140 (241)
Q Consensus 131 ~vi~t~H~~~ 140 (241)
++|+++|...
T Consensus 189 tii~~sh~~~ 198 (234)
T cd03251 189 TTFVIAHRLS 198 (234)
T ss_pred EEEEEecCHH
Confidence 9999999886
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=8.3e-14 Score=118.54 Aligned_cols=64 Identities=16% Similarity=0.220 Sum_probs=51.6
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|.+++++..+++++..+|+++++|||++++|+.... .. ..+.++|+++|... .+..+ +|+
T Consensus 147 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~sH~~~--------~~~~~---~d~ 214 (250)
T PRK14240 147 LSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQEL-KKDYTIVIVTHNMQ--------QASRI---SDK 214 (250)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEEeCHH--------HHHhh---CCE
Confidence 5667899999999999999999999999999995432 22 34789999999875 45556 787
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
+++
T Consensus 215 v~~ 217 (250)
T PRK14240 215 TAF 217 (250)
T ss_pred EEE
Confidence 776
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.6e-14 Score=131.77 Aligned_cols=66 Identities=20% Similarity=0.178 Sum_probs=54.8
Q ss_pred CCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCcccccccccc
Q 026207 86 VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVD 158 (241)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d 158 (241)
.+|+|++|++.+++++..+|+++++|||++++|+.... ..++.|.++|+++|..+ .+.++ ||
T Consensus 405 ~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~--------~~~~~---~d 473 (506)
T PRK13549 405 RLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELP--------EVLGL---SD 473 (506)
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHH--------HHHHh---CC
Confidence 35668899999999999999999999999999995432 34456899999999987 56667 88
Q ss_pred EEEe
Q 026207 159 TVTL 162 (241)
Q Consensus 159 ~V~~ 162 (241)
++++
T Consensus 474 ~v~~ 477 (506)
T PRK13549 474 RVLV 477 (506)
T ss_pred EEEE
Confidence 8776
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.9e-14 Score=119.44 Aligned_cols=112 Identities=19% Similarity=0.195 Sum_probs=75.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCCC----------CCccccc-
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGDG----------DIPHSAI- 78 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~~----------~~~~~~~- 78 (241)
+++|+||||||||||++.|+|..++..|. .+.|+.+...+.... .......
T Consensus 29 ~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~ 108 (236)
T cd03253 29 KVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVI 108 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhcchHHHHHhhcCCCCCHHHHH
Confidence 89999999999999999999999877542 122332111111000 0000000
Q ss_pred ------cch---h------------hcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCc
Q 026207 79 ------GTA---R------------RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGV 130 (241)
Q Consensus 79 ------~~~---~------------~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~ 130 (241)
+.. . ....+|.+++++..+++++..+|+++++|||++++|+.... ...+ |.
T Consensus 109 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~ 187 (236)
T cd03253 109 EAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GR 187 (236)
T ss_pred HHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CC
Confidence 000 0 11246668899999999999999999999999999995432 2333 88
Q ss_pred EEEEeecCCC
Q 026207 131 MLIGTAHGEW 140 (241)
Q Consensus 131 ~vi~t~H~~~ 140 (241)
++|+++|..+
T Consensus 188 tiii~sh~~~ 197 (236)
T cd03253 188 TTIVIAHRLS 197 (236)
T ss_pred EEEEEcCCHH
Confidence 9999999886
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.5e-14 Score=118.74 Aligned_cols=64 Identities=16% Similarity=0.226 Sum_probs=51.3
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|++++++..+++++..+|+++++|||++++|+.... ... .+.++|+++|... .+..+ ||+
T Consensus 146 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~--------~~~~~---~d~ 213 (249)
T PRK14253 146 LSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELK-KNYTIVIVTHSMQ--------QARRI---SDR 213 (249)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEecCHH--------HHHHh---CCE
Confidence 5567899999999999999999999999999995432 333 3588999999876 45566 788
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
+++
T Consensus 214 i~~ 216 (249)
T PRK14253 214 TAF 216 (249)
T ss_pred EEE
Confidence 776
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.6e-14 Score=130.75 Aligned_cols=124 Identities=15% Similarity=0.206 Sum_probs=83.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC-------------------eEEEEcCCcccCCC-C--------CCcccc--
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK-------------------RVVIVDTSNEIGGD-G--------DIPHSA-- 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-------------------~v~~i~~~~e~~~~-~--------~~~~~~-- 77 (241)
+++|+||||||||||++.+++.+++..|. .+.|+.+....... . ......
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~ 105 (491)
T PRK10982 26 IHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMF 105 (491)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHHHHhhcccccccccc
Confidence 89999999999999999999998776332 13333322111100 0 000000
Q ss_pred cc------c--------------hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCc
Q 026207 78 IG------T--------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGV 130 (241)
Q Consensus 78 ~~------~--------------~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~ 130 (241)
.. . ......+|+|+++++.+++++..+|+++|+|||++++|+.... ...+.|.
T Consensus 106 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~ 185 (491)
T PRK10982 106 VDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGC 185 (491)
T ss_pred cCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Confidence 00 0 0112335678899999999999999999999999999995432 3445689
Q ss_pred EEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 131 MLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 131 ~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++|+++|... .+.++ ||+|++
T Consensus 186 tvii~tH~~~--------~~~~~---~d~i~~ 206 (491)
T PRK10982 186 GIVYISHKME--------EIFQL---CDEITI 206 (491)
T ss_pred EEEEEecCHH--------HHHHh---CCEEEE
Confidence 9999999886 44555 676665
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=8.1e-14 Score=119.73 Aligned_cols=64 Identities=17% Similarity=0.191 Sum_probs=51.4
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|++++++..+++++..+|+++++|||++++|+.... ... .+.++|+++|... .+.++ ||+
T Consensus 152 LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tvi~vtH~~~--------~~~~~---~d~ 219 (264)
T PRK14243 152 LSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELK-EQYTIIIVTHNMQ--------QAARV---SDM 219 (264)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHH--------HHHHh---CCE
Confidence 5667899999999999999999999999999995432 222 3578999999876 55666 788
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
|++
T Consensus 220 v~~ 222 (264)
T PRK14243 220 TAF 222 (264)
T ss_pred EEE
Confidence 776
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.9e-13 Score=115.62 Aligned_cols=124 Identities=15% Similarity=0.159 Sum_probs=82.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC----------------eEEEEcCCcccCCCCCCccc-cc------------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK----------------RVVIVDTSNEIGGDGDIPHS-AI------------ 78 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------~v~~i~~~~e~~~~~~~~~~-~~------------ 78 (241)
+++|.||||||||||++.|++.+++..|. .+.|+.+............. ..
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~ 107 (237)
T TIGR00968 28 LVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKI 107 (237)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHHHHHhHHHhcCCCHHHH
Confidence 89999999999999999999998776442 12333321111100000000 00
Q ss_pred -cc----hh----------hcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhC-CcEEEEe
Q 026207 79 -GT----AR----------RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAER-GVMLIGT 135 (241)
Q Consensus 79 -~~----~~----------~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~-g~~vi~t 135 (241)
.. .. ....+|.+++++..+++++..+|+++++|||++++|+.... +.... |.+++.+
T Consensus 108 ~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~ 187 (237)
T TIGR00968 108 KARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFV 187 (237)
T ss_pred HHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 00 00 11235667799999999999999999999999999995432 22333 7899999
Q ss_pred ecCCChhhhhcCCccccccccccEEEe
Q 026207 136 AHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 136 ~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+|..+ .+..+ ||+++.
T Consensus 188 sH~~~--------~~~~~---~d~i~~ 203 (237)
T TIGR00968 188 THDQE--------EAMEV---ADRIVV 203 (237)
T ss_pred eCCHH--------HHHhh---cCEEEE
Confidence 99886 55666 788766
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.2e-14 Score=112.35 Aligned_cols=54 Identities=22% Similarity=0.287 Sum_probs=48.0
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHH-------HHHHhCCcEEEEeecCCC
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC-------RSIAERGVMLIGTAHGEW 140 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~-------~~~~~~g~~vi~t~H~~~ 140 (241)
+|++.+|++.+++++.++|+++++|||++.+|++.. ...++.|.|++.++|.+.
T Consensus 153 LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~ 213 (256)
T COG4598 153 LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMG 213 (256)
T ss_pred cCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehh
Confidence 466789999999999999999999999999999644 356778999999999998
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=6e-14 Score=121.07 Aligned_cols=64 Identities=14% Similarity=0.185 Sum_probs=51.5
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|++++++..+++++..+|+++|+|||++++|+.... ..++ +.++|+++|..+ .+..+ ||+
T Consensus 169 LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~--------~~~~~---~d~ 236 (272)
T PRK14236 169 LSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ--------QAARV---SDY 236 (272)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH--------HHHhh---CCE
Confidence 5567899999999999999999999999999995432 3333 688999999986 45556 788
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
++.
T Consensus 237 i~~ 239 (272)
T PRK14236 237 TAF 239 (272)
T ss_pred EEE
Confidence 776
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.2e-14 Score=131.25 Aligned_cols=66 Identities=20% Similarity=0.190 Sum_probs=54.0
Q ss_pred CCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCcccccccccc
Q 026207 86 VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVD 158 (241)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d 158 (241)
.+|+|++++..+++++..+|+++++|||++++|+.... .....|.++|+++|..+ .+..+ ||
T Consensus 395 ~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~--------~~~~~---~d 463 (501)
T PRK10762 395 LLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMP--------EVLGM---SD 463 (501)
T ss_pred hCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHH--------HHHhh---CC
Confidence 35667899999999999999999999999999995432 34456899999999886 55666 88
Q ss_pred EEEe
Q 026207 159 TVTL 162 (241)
Q Consensus 159 ~V~~ 162 (241)
+|++
T Consensus 464 ~v~~ 467 (501)
T PRK10762 464 RILV 467 (501)
T ss_pred EEEE
Confidence 8776
|
|
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.3e-14 Score=119.35 Aligned_cols=122 Identities=16% Similarity=0.208 Sum_probs=87.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccC---CCCCCccc----------------------------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIG---GDGDIPHS---------------------------- 76 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~---~~~~~~~~---------------------------- 76 (241)
.+.|+|+||||||||++.|++.++|+.|. +.+....... +.+..|..
T Consensus 55 ~vGiiG~NGaGKSTLlkliaGi~~Pt~G~--v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G~~~~ei~~~~~eIi 132 (249)
T COG1134 55 RVGIIGHNGAGKSTLLKLIAGIYKPTSGK--VKVTGKVAPLIELGAGFDPELTGRENIYLRGLILGLTRKEIDEKVDEII 132 (249)
T ss_pred EEEEECCCCCcHHHHHHHHhCccCCCCce--EEEcceEehhhhcccCCCcccchHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 69999999999999999999999999665 3333111000 00111110
Q ss_pred ---cccch--hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHH-------HHHHhCCcEEEEeecCCChhhh
Q 026207 77 ---AIGTA--RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC-------RSIAERGVMLIGTAHGEWLENI 144 (241)
Q Consensus 77 ---~~~~~--~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~-------~~~~~~g~~vi~t~H~~~~~~~ 144 (241)
.++.+ ..+..+|.+|..|.+++.+...+||++++||+-+.-|+.-. .+..+.+.+++.++|...
T Consensus 133 eFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~---- 208 (249)
T COG1134 133 EFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLG---- 208 (249)
T ss_pred HHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHH----
Confidence 01111 12445778999999999999999999999999988887322 234456789999999997
Q ss_pred hcCCccccccccccEEEe
Q 026207 145 IKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 145 ~~~p~l~~l~~~~d~V~~ 162 (241)
.+.+. ||+++.
T Consensus 209 ----~I~~~---Cd~~i~ 219 (249)
T COG1134 209 ----AIKQY---CDRAIW 219 (249)
T ss_pred ----HHHHh---cCeeEE
Confidence 67777 999887
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.50 E-value=1e-13 Score=132.76 Aligned_cols=124 Identities=10% Similarity=0.146 Sum_probs=84.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC-------eEEEEcCCcc-cCCC-C------C-Cc----c--c-----cc--
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK-------RVVIVDTSNE-IGGD-G------D-IP----H--S-----AI-- 78 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-------~v~~i~~~~e-~~~~-~------~-~~----~--~-----~~-- 78 (241)
.++|+||||||||||++.|++.++++.|. ++.|+.+... +... . . .. . . .+
T Consensus 347 ~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~ 426 (635)
T PRK11147 347 KIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQD 426 (635)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHh
Confidence 89999999999999999999998876442 3456653221 1110 0 0 00 0 0 00
Q ss_pred -cc-----hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH---HH-HhCCcEEEEeecCCChhhhhcCC
Q 026207 79 -GT-----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR---SI-AERGVMLIGTAHGEWLENIIKNP 148 (241)
Q Consensus 79 -~~-----~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~---~~-~~~g~~vi~t~H~~~~~~~~~~p 148 (241)
+. ...+..+|+|++++..+++++..+|+++|+|||++++|+.... .+ .+.+.++|+++|...
T Consensus 427 ~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vSHd~~-------- 498 (635)
T PRK11147 427 FLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSYQGTVLLVSHDRQ-------- 498 (635)
T ss_pred cCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHH--------
Confidence 00 0123446778899999999999999999999999999996543 22 233568999999886
Q ss_pred ccccccccccEEEe
Q 026207 149 ILSDLIGGVDTVTL 162 (241)
Q Consensus 149 ~l~~l~~~~d~V~~ 162 (241)
.+..+ ||+++.
T Consensus 499 ~~~~~---~d~i~~ 509 (635)
T PRK11147 499 FVDNT---VTECWI 509 (635)
T ss_pred HHHHh---cCEEEE
Confidence 44555 666665
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=99.50 E-value=5e-14 Score=131.92 Aligned_cols=65 Identities=20% Similarity=0.216 Sum_probs=53.0
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHH-hCCcEEEEeecCCChhhhhcCCcccccccccc
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVD 158 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~-~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d 158 (241)
+|+|++++..+++++..+|+++++|||++++|+.... ... +.|.++|+++|... .+..+ ||
T Consensus 428 LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~--------~~~~~---~d 496 (520)
T TIGR03269 428 LSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD--------FVLDV---CD 496 (520)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH--------HHHHh---CC
Confidence 4567899999999999999999999999999995433 332 34889999999987 55666 88
Q ss_pred EEEe
Q 026207 159 TVTL 162 (241)
Q Consensus 159 ~V~~ 162 (241)
++++
T Consensus 497 ~i~~ 500 (520)
T TIGR03269 497 RAAL 500 (520)
T ss_pred EEEE
Confidence 8876
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.3e-13 Score=115.17 Aligned_cols=113 Identities=17% Similarity=0.202 Sum_probs=74.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC---------------------eEEEEcCCcccCCCCCCcc---------cc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK---------------------RVVIVDTSNEIGGDGDIPH---------SA 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~---------------------~v~~i~~~~e~~~~~~~~~---------~~ 77 (241)
+++|.||||||||||++.|++.+++..|. .+.|+.+...+........ ..
T Consensus 33 ~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~ 112 (220)
T TIGR02982 33 IVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPN 112 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhccC
Confidence 89999999999999999999998876442 1222221111111000000 00
Q ss_pred cc------c----hh----------hcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHH-hCC
Q 026207 78 IG------T----AR----------RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIA-ERG 129 (241)
Q Consensus 78 ~~------~----~~----------~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~-~~g 129 (241)
.. . +. ....+|.+++++..+++++..+|+++++|||++++|+.... ... +.|
T Consensus 113 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~ 192 (220)
T TIGR02982 113 LSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQG 192 (220)
T ss_pred CCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcC
Confidence 00 0 00 11224557799999999999999999999999999995532 233 358
Q ss_pred cEEEEeecCCC
Q 026207 130 VMLIGTAHGEW 140 (241)
Q Consensus 130 ~~vi~t~H~~~ 140 (241)
.++|+++|..+
T Consensus 193 ~tii~~sh~~~ 203 (220)
T TIGR02982 193 CTILIVTHDNR 203 (220)
T ss_pred CEEEEEeCCHH
Confidence 99999999985
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.9e-14 Score=126.09 Aligned_cols=65 Identities=14% Similarity=0.236 Sum_probs=52.1
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHH-hCCcEEEEeecCCChhhhhcCCcccccccccc
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVD 158 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~-~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d 158 (241)
+|++++|+..+++++..+|+++++|||++++|+.... +.. +.|.++|.++|... .+..+ ||
T Consensus 101 LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~~--------e~~~~---~d 169 (325)
T TIGR01187 101 LSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQE--------EAMTM---SD 169 (325)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--------HHHHh---CC
Confidence 5667899999999999999999999999999995432 222 34899999999886 45555 77
Q ss_pred EEEe
Q 026207 159 TVTL 162 (241)
Q Consensus 159 ~V~~ 162 (241)
+|++
T Consensus 170 ~i~v 173 (325)
T TIGR01187 170 RIAI 173 (325)
T ss_pred EEEE
Confidence 7766
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.8e-14 Score=118.09 Aligned_cols=123 Identities=13% Similarity=0.126 Sum_probs=80.0
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccC-C-C-CCCcc----ccc-------cc------------
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIG-G-D-GDIPH----SAI-------GT------------ 80 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~-~-~-~~~~~----~~~-------~~------------ 80 (241)
.+++|.||||||||||++.+++..++..|. +..+. +.... . . ...+. ..+ +.
T Consensus 14 e~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~-i~~~~-~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~ 91 (213)
T PRK15177 14 EHIGILAAPGSGKTTLTRLLCGLDAPDEGD-FIGLR-GDALPLGANSFILPGLTGEENARMMASLYGLDGDEFSHFCYQL 91 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCccCCCCC-EEEec-CceeccccccccCCcCcHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 489999999999999999999999888665 22122 11110 0 0 00000 000 00
Q ss_pred -------hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH---H-H--HhCCcEEEEeecCCChhhhhcC
Q 026207 81 -------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR---S-I--AERGVMLIGTAHGEWLENIIKN 147 (241)
Q Consensus 81 -------~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~---~-~--~~~g~~vi~t~H~~~~~~~~~~ 147 (241)
......+|.+++++..+++++..+|+++++|||.+..|+.... . . ...+.++|+++|...
T Consensus 92 ~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~~~ii~vsH~~~------- 164 (213)
T PRK15177 92 TQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQQKGLIVLTHNPR------- 164 (213)
T ss_pred hChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhhCCcEEEEECCHH-------
Confidence 0012335667899999999999999999999998888884322 1 1 113456888999986
Q ss_pred CccccccccccEEEe
Q 026207 148 PILSDLIGGVDTVTL 162 (241)
Q Consensus 148 p~l~~l~~~~d~V~~ 162 (241)
.+..+ ||++++
T Consensus 165 -~~~~~---~d~i~~ 175 (213)
T PRK15177 165 -LIKEH---CHAFGV 175 (213)
T ss_pred -HHHHh---cCeeEE
Confidence 44555 777666
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.2e-13 Score=117.55 Aligned_cols=64 Identities=14% Similarity=0.199 Sum_probs=51.1
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|++++++..+++++..+|+++++|||++++|+.... .. ..+.++|+++|... .+..+ +|+
T Consensus 148 LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tiiiisH~~~--------~~~~~---~d~ 215 (251)
T PRK14251 148 FSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMEL-KHQYTFIMVTHNLQ--------QAGRI---SDQ 215 (251)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHH-HcCCeEEEEECCHH--------HHHhh---cCE
Confidence 4567899999999999999999999999999995432 22 24688999999886 45555 787
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
+++
T Consensus 216 i~~ 218 (251)
T PRK14251 216 TAF 218 (251)
T ss_pred EEE
Confidence 766
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.1e-13 Score=130.65 Aligned_cols=124 Identities=15% Similarity=0.219 Sum_probs=83.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC-------eEEEEcCCcc-cCCC-C--------C----Ccc-c-----c---
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK-------RVVIVDTSNE-IGGD-G--------D----IPH-S-----A--- 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-------~v~~i~~~~e-~~~~-~--------~----~~~-~-----~--- 77 (241)
+++|+||||||||||++.+++.+++..|. ++.|+.+... +... . . ... . .
T Consensus 350 ~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~ 429 (552)
T TIGR03719 350 IVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGR 429 (552)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHh
Confidence 89999999999999999999998876442 3556654321 1110 0 0 000 0 0
Q ss_pred ccc-----hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHHH----HHhCCcEEEEeecCCChhhhhcCC
Q 026207 78 IGT-----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRS----IAERGVMLIGTAHGEWLENIIKNP 148 (241)
Q Consensus 78 ~~~-----~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~~----~~~~g~~vi~t~H~~~~~~~~~~p 148 (241)
++. ......+|+|++++..+++++..+|+++++|||++++|+..... ..+.+.++|+++|...
T Consensus 430 ~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~viivsHd~~-------- 501 (552)
T TIGR03719 430 FNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFAGCAVVISHDRW-------- 501 (552)
T ss_pred CCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCHH--------
Confidence 000 01123456788999999999999999999999999999955431 2222347899999886
Q ss_pred ccccccccccEEEe
Q 026207 149 ILSDLIGGVDTVTL 162 (241)
Q Consensus 149 ~l~~l~~~~d~V~~ 162 (241)
.+..+ ||+|+.
T Consensus 502 ~~~~~---~d~i~~ 512 (552)
T TIGR03719 502 FLDRI---ATHILA 512 (552)
T ss_pred HHHHh---CCEEEE
Confidence 45555 777665
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1e-13 Score=130.07 Aligned_cols=66 Identities=15% Similarity=0.198 Sum_probs=53.7
Q ss_pred CCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHh-CCcEEEEeecCCChhhhhcCCccccccccc
Q 026207 86 VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGV 157 (241)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~-~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~ 157 (241)
.+|+|++|++.+++++..+|+++|+|||++++|+.... ...+ .|.++|+++|... .+..+ |
T Consensus 425 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~--------~~~~~---~ 493 (529)
T PRK15134 425 EFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLH--------VVRAL---C 493 (529)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH--------HHHHh---c
Confidence 45678899999999999999999999999999995432 3333 4889999999886 55566 8
Q ss_pred cEEEe
Q 026207 158 DTVTL 162 (241)
Q Consensus 158 d~V~~ 162 (241)
|++++
T Consensus 494 d~i~~ 498 (529)
T PRK15134 494 HQVIV 498 (529)
T ss_pred CeEEE
Confidence 88877
|
|
| >TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.5e-13 Score=120.53 Aligned_cols=116 Identities=20% Similarity=0.249 Sum_probs=88.9
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCC--CCCcccHHHHHHHHHhc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQV--PEPSLQHKVMIEAVENH 103 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~ 103 (241)
.+.++|+|++|+||||+++++++.+++. .+++++++..|+.... +.. .....+... ......+..++..++++
T Consensus 178 ~~~ili~G~tGsGKTTll~al~~~i~~~--~riv~iEd~~El~~~~--~~~-~~l~~r~~~~~g~~~~t~~~ll~~aLR~ 252 (340)
T TIGR03819 178 RLAFLISGGTGSGKTTLLSALLALVAPD--ERIVLVEDAAELRPDH--PHV-VRLEARPANVEGAGAVTLTDLVRQALRM 252 (340)
T ss_pred CCeEEEECCCCCCHHHHHHHHHccCCCC--CcEEEECCcceecCCC--CCe-eeEEeccccccCcCccCHHHHHHHHhcc
Confidence 4589999999999999999999999876 6789999888885321 110 000001111 12357889999999999
Q ss_pred CCcEEEEcCCCCHHhHHHHHHHHhCCcE-EEEeecCCChhhhhcC
Q 026207 104 MPEVIIVDEIGTEAEAHACRSIAERGVM-LIGTAHGEWLENIIKN 147 (241)
Q Consensus 104 ~p~vlilDE~~~~~d~~~~~~~~~~g~~-vi~t~H~~~~~~~~~~ 147 (241)
+||.|+++|+++.+. ..+.++.++||. .++|+|++++.+++.+
T Consensus 253 ~PD~IivGEiRg~Ea-~~~l~a~~tGh~G~~tTiHA~s~~~~~~R 296 (340)
T TIGR03819 253 RPDRIVVGEVRGAEV-VDLLAALNTGHDGGAGTLHANSPADVPAR 296 (340)
T ss_pred CCCeEEEeCcCcHHH-HHHHHHHHcCCCceEEeeCCCCHHHHHHH
Confidence 999999999998864 455788899997 8999999998887754
|
Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer. |
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.1e-13 Score=113.76 Aligned_cols=122 Identities=17% Similarity=0.174 Sum_probs=80.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCCC----C------Cccccc-
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGDG----D------IPHSAI- 78 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~~----~------~~~~~~- 78 (241)
+++|.||||||||||++.|++..++..|. .+.|+.+...+.... . ......
T Consensus 32 ~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~ 111 (220)
T cd03245 32 KVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERIL 111 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCccccchHHHHhhcCCCCCCHHHHH
Confidence 89999999999999999999998766442 133333221111000 0 000000
Q ss_pred ------cc---hhh------------cCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCc
Q 026207 79 ------GT---ARR------------MQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGV 130 (241)
Q Consensus 79 ------~~---~~~------------~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~ 130 (241)
+. ..+ ...+|++++++..+++++..+|+++++|||++++|+.... ...+ +.
T Consensus 112 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~ 190 (220)
T cd03245 112 RAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLG-DK 190 (220)
T ss_pred HHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CC
Confidence 00 000 1256778899999999999999999999999999995443 2223 47
Q ss_pred EEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 131 MLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 131 ~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++|+++|..+ .+ .+ ||+++.
T Consensus 191 tii~~sH~~~--------~~-~~---~d~v~~ 210 (220)
T cd03245 191 TLIIITHRPS--------LL-DL---VDRIIV 210 (220)
T ss_pred EEEEEeCCHH--------HH-Hh---CCEEEE
Confidence 8999999986 33 34 777765
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.2e-13 Score=121.04 Aligned_cols=62 Identities=21% Similarity=0.241 Sum_probs=49.8
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|++++++..+++++.++|+++++|||++++|+.... ...+ +.++|+++|..+ .+..+ ||+
T Consensus 201 LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~--------~i~~~---~d~ 268 (305)
T PRK14264 201 LSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQ--------QAARI---SDQ 268 (305)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH--------HHHHh---cCE
Confidence 5667899999999999999999999999999995432 3333 578999999886 55566 787
Q ss_pred E
Q 026207 160 V 160 (241)
Q Consensus 160 V 160 (241)
+
T Consensus 269 i 269 (305)
T PRK14264 269 T 269 (305)
T ss_pred E
Confidence 5
|
|
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.7e-14 Score=138.66 Aligned_cols=161 Identities=17% Similarity=0.200 Sum_probs=112.4
Q ss_pred eEEEEEeEEeeCcce-ee---------ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC--------
Q 026207 9 LLIVKFFYALYSINK-II---------FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD-------- 70 (241)
Q Consensus 9 ~~~~r~~~~~~~~~~-~~---------~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~-------- 70 (241)
.+.+..+...++..+ .. .....+.|||||||||+++++.|..+++.|. +++. +..+...
T Consensus 564 ~~~~~~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~--a~i~-g~~i~~~~~~~~~~~ 640 (885)
T KOG0059|consen 564 ALVLNNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGE--ALIK-GHDITVSTDFQQVRK 640 (885)
T ss_pred eEEEcceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcce--EEEe-cCccccccchhhhhh
Confidence 345555555555433 22 2368999999999999999999999999766 4442 3322211
Q ss_pred --CCCccccc------------------c-------c---------------hhhcCCCCCcccHHHHHHHHHhcCCcEE
Q 026207 71 --GDIPHSAI------------------G-------T---------------ARRMQVPEPSLQHKVMIEAVENHMPEVI 108 (241)
Q Consensus 71 --~~~~~~~~------------------~-------~---------------~~~~~~~~~~~~~~~~~~~~l~~~p~vl 108 (241)
+.-|+.+. | . ..+...+++|.+.+..++.++.-+|+++
T Consensus 641 ~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi 720 (885)
T KOG0059|consen 641 QLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVI 720 (885)
T ss_pred hcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEE
Confidence 11222100 0 0 0123456778888999999999999999
Q ss_pred EEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe-CChHHHHHHHHHhhhccC
Q 026207 109 IVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL-GDEEARARRCQKSILERK 180 (241)
Q Consensus 109 ilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~-~~~~~~~~~~~~~~k~r~ 180 (241)
++|||.++.||.+.+ .+.++|..++.|+|.++ +.+.+ ||++.+ -++...+-+...++|+||
T Consensus 721 ~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMe--------E~EaL---CtR~aImv~G~l~ciGs~q~LKsrf 789 (885)
T KOG0059|consen 721 LLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSME--------EAEAL---CTRTAIMVIGQLRCIGSPQELKSRY 789 (885)
T ss_pred EecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH--------HHHHH---hhhhheeecCeeEEecChHHHHhhc
Confidence 999999999995544 45556669999999998 67778 999887 444433338889999999
Q ss_pred CCC
Q 026207 181 APP 183 (241)
Q Consensus 181 g~~ 183 (241)
|..
T Consensus 790 G~g 792 (885)
T KOG0059|consen 790 GSG 792 (885)
T ss_pred CCc
Confidence 875
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.5e-13 Score=114.99 Aligned_cols=54 Identities=17% Similarity=0.162 Sum_probs=45.7
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCC
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~ 140 (241)
+|++++++..+++++..+|+++++|||++++|+.... ...+.|.++|+++|..+
T Consensus 145 LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~ 205 (243)
T TIGR01978 145 FSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR 205 (243)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH
Confidence 6668899999999999999999999999999995432 33446889999999876
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.7e-14 Score=119.00 Aligned_cols=64 Identities=19% Similarity=0.193 Sum_probs=51.2
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|.+++++..+++++..+|+++++|||++++|+.... ..+ .+.++|+++|... .+..+ +|+
T Consensus 150 LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~-~~~tvii~sh~~~--------~~~~~---~d~ 217 (253)
T PRK14261 150 LSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLK-KEYTVIIVTHNMQ--------QAARV---SDY 217 (253)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-hCceEEEEEcCHH--------HHHhh---CCE
Confidence 5667899999999999999999999999999995432 333 3578999999876 45556 788
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
++.
T Consensus 218 v~~ 220 (253)
T PRK14261 218 TGF 220 (253)
T ss_pred EEE
Confidence 766
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=2e-13 Score=116.32 Aligned_cols=64 Identities=20% Similarity=0.265 Sum_probs=50.9
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|.+++++..+++++..+|+++++|||++++|+.... ...+ +.++|+++|... .+... ||+
T Consensus 149 LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~--------~~~~~---~d~ 216 (252)
T PRK14255 149 LSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMH--------QASRI---SDK 216 (252)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHH--------HHHHh---CCE
Confidence 5667899999999999999999999999999995432 2233 578999999886 45555 788
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
|+.
T Consensus 217 i~~ 219 (252)
T PRK14255 217 TAF 219 (252)
T ss_pred EEE
Confidence 776
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.6e-13 Score=119.25 Aligned_cols=63 Identities=21% Similarity=0.223 Sum_probs=49.7
Q ss_pred CCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCcccccccccc
Q 026207 86 VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVD 158 (241)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d 158 (241)
.+|++++++..+++++..+|+++++|||++++|+.... ...+ +.++|+++|... .+..+ +|
T Consensus 180 ~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~--------~i~~~---~d 247 (285)
T PRK14254 180 DLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQ--------QAARI---SD 247 (285)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH--------HHHhh---cC
Confidence 35667899999999999999999999999999995432 2333 478999999886 45556 77
Q ss_pred EE
Q 026207 159 TV 160 (241)
Q Consensus 159 ~V 160 (241)
++
T Consensus 248 ri 249 (285)
T PRK14254 248 KT 249 (285)
T ss_pred EE
Confidence 74
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=9e-14 Score=120.83 Aligned_cols=65 Identities=14% Similarity=0.172 Sum_probs=51.8
Q ss_pred CCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCcccccccccc
Q 026207 86 VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVD 158 (241)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d 158 (241)
.+|+|++++..+++++..+|+++|+|||++++|+.... ... .+.++|+++|... .+..+ ||
T Consensus 182 ~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~-~~~tvIivsH~~~--------~~~~~---~d 249 (286)
T PRK14275 182 GLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELR-GSYTIMIVTHNMQ--------QASRV---SD 249 (286)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH--------HHHHh---CC
Confidence 35667899999999999999999999999999995432 222 3678999999876 45556 78
Q ss_pred EEEe
Q 026207 159 TVTL 162 (241)
Q Consensus 159 ~V~~ 162 (241)
++++
T Consensus 250 ~i~~ 253 (286)
T PRK14275 250 YTMF 253 (286)
T ss_pred EEEE
Confidence 8776
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.8e-13 Score=117.83 Aligned_cols=64 Identities=13% Similarity=0.198 Sum_probs=51.2
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|++++++..+++++..+|+++++|||++++|+.... .. ..+.++|+++|... .+..+ ||+
T Consensus 164 LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tiii~tH~~~--------~~~~~---~d~ 231 (267)
T PRK14237 164 LSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFEL-KKNYTIIIVTHNMQ--------QAARA---SDY 231 (267)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-hcCCEEEEEecCHH--------HHHHh---cCE
Confidence 5567899999999999999999999999999995432 33 34788999999875 45555 788
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
+++
T Consensus 232 i~~ 234 (267)
T PRK14237 232 TAF 234 (267)
T ss_pred EEE
Confidence 776
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.5e-13 Score=116.97 Aligned_cols=65 Identities=15% Similarity=0.161 Sum_probs=51.7
Q ss_pred CCCcccHHHHHHHHHhc-------CCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCcccc
Q 026207 87 PEPSLQHKVMIEAVENH-------MPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSD 152 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~-------~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~ 152 (241)
+|.+++++..+++++.. +|+++++|||++++|+.... ...+.|.++|+++|..+ .+..
T Consensus 127 LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~--------~~~~ 198 (248)
T PRK03695 127 LSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN--------HTLR 198 (248)
T ss_pred CCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH--------HHHH
Confidence 56678999999999987 67999999999999995432 33446889999999986 4556
Q ss_pred ccccccEEEe
Q 026207 153 LIGGVDTVTL 162 (241)
Q Consensus 153 l~~~~d~V~~ 162 (241)
+ ||++++
T Consensus 199 ~---~d~i~~ 205 (248)
T PRK03695 199 H---ADRVWL 205 (248)
T ss_pred h---CCEEEE
Confidence 6 787776
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.7e-13 Score=126.23 Aligned_cols=66 Identities=21% Similarity=0.320 Sum_probs=56.3
Q ss_pred CCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHH-------HH-HHhCCcEEEEeecCCChhhhhcCCccccccccc
Q 026207 86 VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC-------RS-IAERGVMLIGTAHGEWLENIIKNPILSDLIGGV 157 (241)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~-------~~-~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~ 157 (241)
.+|+|++|+++++.++..+|++||.|||++.+|+... +. ..+.|.++|.++|... .+.++ |
T Consensus 154 eLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~--------Vva~~---a 222 (539)
T COG1123 154 QLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLG--------VVAEL---A 222 (539)
T ss_pred ccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHH--------HHHHh---c
Confidence 4678999999999999999999999999999999432 22 2467999999999997 77888 9
Q ss_pred cEEEe
Q 026207 158 DTVTL 162 (241)
Q Consensus 158 d~V~~ 162 (241)
|+|+.
T Consensus 223 Drv~V 227 (539)
T COG1123 223 DRVVV 227 (539)
T ss_pred CeEEE
Confidence 99887
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.3e-13 Score=116.56 Aligned_cols=64 Identities=14% Similarity=0.239 Sum_probs=50.3
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|.+++++..+++++..+|+++++|||++++|..... +.. .+.++|+++|..+ .+..+ ||+
T Consensus 154 LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiilvsh~~~--------~~~~~---~d~ 221 (257)
T PRK14246 154 LSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELK-NEIAIVIVSHNPQ--------QVARV---ADY 221 (257)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCcEEEEEECCHH--------HHHHh---CCE
Confidence 3556789999999999999999999999999995432 232 3689999999986 44555 777
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
++.
T Consensus 222 v~~ 224 (257)
T PRK14246 222 VAF 224 (257)
T ss_pred EEE
Confidence 665
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.6e-13 Score=129.48 Aligned_cols=124 Identities=14% Similarity=0.213 Sum_probs=83.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC-------eEEEEcCCc-ccCCC-C--------C----Ccc-c-----c---
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK-------RVVIVDTSN-EIGGD-G--------D----IPH-S-----A--- 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-------~v~~i~~~~-e~~~~-~--------~----~~~-~-----~--- 77 (241)
++.|+||||||||||++.|++.+++..|. ++.|+.+.. .+... . . ... . .
T Consensus 352 ~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~ 431 (556)
T PRK11819 352 IVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGR 431 (556)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHh
Confidence 89999999999999999999998876442 345555332 11110 0 0 000 0 0
Q ss_pred ccc-----hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHHH----HHhCCcEEEEeecCCChhhhhcCC
Q 026207 78 IGT-----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRS----IAERGVMLIGTAHGEWLENIIKNP 148 (241)
Q Consensus 78 ~~~-----~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~~----~~~~g~~vi~t~H~~~~~~~~~~p 148 (241)
++. ......+|+|++++..+++++..+|+++++|||++++|+..... ..+...++|+++|...
T Consensus 432 ~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vtHd~~-------- 503 (556)
T PRK11819 432 FNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFPGCAVVISHDRW-------- 503 (556)
T ss_pred CCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHH--------
Confidence 000 01233466788999999999999999999999999999955431 1222237889999886
Q ss_pred ccccccccccEEEe
Q 026207 149 ILSDLIGGVDTVTL 162 (241)
Q Consensus 149 ~l~~l~~~~d~V~~ 162 (241)
.+..+ ||+|+.
T Consensus 504 ~~~~~---~d~i~~ 514 (556)
T PRK11819 504 FLDRI---ATHILA 514 (556)
T ss_pred HHHHh---CCEEEE
Confidence 45555 777665
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=3e-13 Score=116.10 Aligned_cols=64 Identities=19% Similarity=0.241 Sum_probs=51.7
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|.+++++..+++++..+|+++++|||++++|+.... +. ..+.++|+++|..+ .+..+ ||+
T Consensus 150 LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~-~~~~tii~isH~~~--------~i~~~---~d~ 217 (261)
T PRK14263 150 LSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVEL-KKDYTIALVTHNMQ--------QAIRV---ADT 217 (261)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEeCCHH--------HHHHh---CCE
Confidence 5668899999999999999999999999999995432 33 34688999999886 45566 788
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
|++
T Consensus 218 v~~ 220 (261)
T PRK14263 218 TAF 220 (261)
T ss_pred EEE
Confidence 776
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.48 E-value=9.2e-14 Score=129.54 Aligned_cols=66 Identities=23% Similarity=0.212 Sum_probs=54.6
Q ss_pred CCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCcccccccccc
Q 026207 86 VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVD 158 (241)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d 158 (241)
.+|+|++++..+++++..+|+++++|||++++|+.... ...+.|.++|+++|..+ .+..+ ||
T Consensus 403 ~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~--------~~~~~---~d 471 (500)
T TIGR02633 403 RLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELA--------EVLGL---SD 471 (500)
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHH--------HHHHh---CC
Confidence 35667899999999999999999999999999995432 34456899999999987 56667 88
Q ss_pred EEEe
Q 026207 159 TVTL 162 (241)
Q Consensus 159 ~V~~ 162 (241)
++++
T Consensus 472 ~v~~ 475 (500)
T TIGR02633 472 RVLV 475 (500)
T ss_pred EEEE
Confidence 8876
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.8e-13 Score=113.94 Aligned_cols=119 Identities=15% Similarity=0.170 Sum_probs=87.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCC---------------CccccccchhhcCCCCCccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGD---------------IPHSAIGTARRMQVPEPSLQ 92 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~---------------~~~~~~~~~~~~~~~~~~~~ 92 (241)
.+.|.|++||||||+.+.++++..++.|. ++++ +.++..... .+.... .+.-..+|++++
T Consensus 41 ~~glVGESG~GKSTlgr~i~~L~~pt~G~--i~f~-g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~--~ryPhelSGGQr 115 (268)
T COG4608 41 TLGLVGESGCGKSTLGRLILGLEEPTSGE--ILFE-GKDITKLSKEERRERVLELLEKVGLPEEFL--YRYPHELSGGQR 115 (268)
T ss_pred EEEEEecCCCCHHHHHHHHHcCcCCCCce--EEEc-CcchhhcchhHHHHHHHHHHHHhCCCHHHh--hcCCcccCchhh
Confidence 69999999999999999999999998665 5555 333211000 000001 122344678999
Q ss_pred HHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH--------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 93 HKVMIEAVENHMPEVIIVDEIGTEAEAHACR--------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 93 ~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~--------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
|+..+++++..+|++++.|||.+.+|..... .....|.+.+..+|..+ .++++ +|+|..
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~--------vv~~i---sdri~V 182 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLS--------VVRYI---SDRIAV 182 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHH--------hhhhh---cccEEE
Confidence 9999999999999999999999999983222 22345899999999998 77888 888776
|
|
| >COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.6e-13 Score=115.42 Aligned_cols=119 Identities=15% Similarity=0.219 Sum_probs=95.4
Q ss_pred eeccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhc
Q 026207 24 IIFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENH 103 (241)
Q Consensus 24 ~~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 103 (241)
...|++++.|++||||||.+.++.+.-.......+++|+++.|+.... +.-+ ..+-++.-....+..++...+++
T Consensus 125 ~kRGLviiVGaTGSGKSTtmAaMi~yRN~~s~gHIiTIEDPIEfih~h---~~CI--vTQREvGvDTesw~~AlkNtlRQ 199 (375)
T COG5008 125 AKRGLVIIVGATGSGKSTTMAAMIGYRNKNSTGHIITIEDPIEFIHKH---KRCI--VTQREVGVDTESWEVALKNTLRQ 199 (375)
T ss_pred ccCceEEEECCCCCCchhhHHHHhcccccCCCCceEEecChHHHHhcc---ccee--EEeeeeccchHHHHHHHHHHHhc
Confidence 456799999999999999999999988777667899999998874321 0001 11222222356889999999999
Q ss_pred CCcEEEEcCCCCHHhHHHHHHHHhCCcEEEEeecCCChhhhhcC
Q 026207 104 MPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKN 147 (241)
Q Consensus 104 ~p~vlilDE~~~~~d~~~~~~~~~~g~~vi~t~H~~~~~~~~~~ 147 (241)
.||+|++.|+++.+..+.+...+++||.+++|.|+++..+++.+
T Consensus 200 apDvI~IGEvRsretMeyAi~fAeTGHLcmaTLHAN~anQaleR 243 (375)
T COG5008 200 APDVILIGEVRSRETMEYAIQFAETGHLCMATLHANNANQALER 243 (375)
T ss_pred CCCeEEEeecccHhHHHHHHHHHhcCceEEEEeccCCchHHHHH
Confidence 99999999999999888888888999999999999997776653
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=99.47 E-value=3e-13 Score=115.18 Aligned_cols=54 Identities=15% Similarity=0.087 Sum_probs=45.6
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCC
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~ 140 (241)
+|++++++..+++++..+|+++++|||++++|+.... ...+.|.++|+++|...
T Consensus 152 LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~ 212 (252)
T CHL00131 152 FSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQR 212 (252)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 6678899999999999999999999999999995432 33446889999999875
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=8e-13 Score=114.27 Aligned_cols=65 Identities=23% Similarity=0.383 Sum_probs=54.4
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHH-------HHH-HhCCcEEEEeecCCChhhhhcCCcccccccccc
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC-------RSI-AERGVMLIGTAHGEWLENIIKNPILSDLIGGVD 158 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~-------~~~-~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d 158 (241)
+|+|++||++++.++..+|++||-|||++.+|.... ... .+.|.++|..+|... .+.++ ||
T Consensus 154 lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~--------vva~~---aD 222 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLG--------VVAEI---AD 222 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--------HHHHh---cc
Confidence 577899999999999999999999999999999322 222 357999999999998 66777 88
Q ss_pred EEEe
Q 026207 159 TVTL 162 (241)
Q Consensus 159 ~V~~ 162 (241)
+|.+
T Consensus 223 ri~V 226 (316)
T COG0444 223 RVAV 226 (316)
T ss_pred eEEE
Confidence 8776
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.3e-13 Score=116.69 Aligned_cols=65 Identities=18% Similarity=0.209 Sum_probs=52.7
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHH-hCCcEEEEeecCCChhhhhcCCcccccccccc
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVD 158 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~-~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d 158 (241)
+|++++++..+++++..+|+++++|||++++|+.... ... ..|.++|+++|... .+..+ ||
T Consensus 151 LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~--------~i~~~---~d 219 (261)
T PRK14258 151 LSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH--------QVSRL---SD 219 (261)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH--------HHHHh---cC
Confidence 5667899999999999999999999999999995432 222 34889999999987 56666 88
Q ss_pred EEEe
Q 026207 159 TVTL 162 (241)
Q Consensus 159 ~V~~ 162 (241)
+|++
T Consensus 220 ~i~~ 223 (261)
T PRK14258 220 FTAF 223 (261)
T ss_pred EEEE
Confidence 8877
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.8e-13 Score=118.67 Aligned_cols=113 Identities=10% Similarity=-0.060 Sum_probs=76.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC-----eEEEEcCCcccCCCC------C---Ccccc-c------cchh----
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK-----RVVIVDTSNEIGGDG------D---IPHSA-I------GTAR---- 82 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-----~v~~i~~~~e~~~~~------~---~~~~~-~------~~~~---- 82 (241)
+++|+||||||||||++.|++.+++..|. ++.|+.+...+.... . ..... . +...
T Consensus 65 ~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~ 144 (282)
T cd03291 65 MLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITK 144 (282)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEeCcccccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHh
Confidence 89999999999999999999999887553 244555332211100 0 00000 0 0000
Q ss_pred -----------hcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH---H----HHhCCcEEEEeecCCC
Q 026207 83 -----------RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR---S----IAERGVMLIGTAHGEW 140 (241)
Q Consensus 83 -----------~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~---~----~~~~g~~vi~t~H~~~ 140 (241)
....+|++++++..+++++..+|+++|+|||++++|+.... . ....+.++|+++|...
T Consensus 145 ~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~ 220 (282)
T cd03291 145 FPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKME 220 (282)
T ss_pred ccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChH
Confidence 01246778899999999999999999999999999985432 1 1234788999999875
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.6e-13 Score=116.25 Aligned_cols=64 Identities=16% Similarity=0.170 Sum_probs=51.4
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|++++++..+++++..+|+++++|||++++|+.... ... .+.++|+++|..+ .+.++ ||+
T Consensus 151 LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~--------~i~~~---~d~ 218 (259)
T PRK14260 151 LSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLR-SELTIAIVTHNMQ--------QATRV---SDF 218 (259)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH--------HHHHh---cCe
Confidence 5567899999999999999999999999999985432 233 3689999999886 55666 788
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
+++
T Consensus 219 i~~ 221 (259)
T PRK14260 219 TAF 221 (259)
T ss_pred EEE
Confidence 776
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1e-13 Score=119.89 Aligned_cols=64 Identities=19% Similarity=0.229 Sum_probs=51.4
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|++++++..+++++..+|+++++|||++++|+.... ...+ +.++|+++|... .+..+ +|+
T Consensus 164 LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~--------~~~~~---~dr 231 (276)
T PRK14271 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA--------QAARI---SDR 231 (276)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH--------HHHHh---CCE
Confidence 5667899999999999999999999999999995432 2333 578999999886 55666 788
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
++.
T Consensus 232 i~~ 234 (276)
T PRK14271 232 AAL 234 (276)
T ss_pred EEE
Confidence 776
|
|
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.5e-13 Score=108.96 Aligned_cols=136 Identities=20% Similarity=0.139 Sum_probs=84.7
Q ss_pred CccccceeeEEEEEeEEeeCcceee---ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc-CCcccCCC------
Q 026207 1 MLRLRNVFLLIVKFFYALYSINKII---FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD-TSNEIGGD------ 70 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~~~~---~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~-~~~e~~~~------ 70 (241)
|++.+|+. ..|.-+.+|...+.. ...+.|.||||||||||+|.++|++.|+.|. +++. ++.....+
T Consensus 2 ~L~a~~L~--~~R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~--v~~~~~~i~~~~~~~~~~l 77 (209)
T COG4133 2 MLEAENLS--CERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGE--VYWQGEPIQNVRESYHQAL 77 (209)
T ss_pred cchhhhhh--hccCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCe--EEecCCCCccchhhHHHHH
Confidence 34444443 334444555555432 2389999999999999999999999999665 4444 11100000
Q ss_pred CCCccc-----------c-------ccc---------------h--h--hcCCCCCcccHHHHHHHHHhcCCcEEEEcCC
Q 026207 71 GDIPHS-----------A-------IGT---------------A--R--RMQVPEPSLQHKVMIEAVENHMPEVIIVDEI 113 (241)
Q Consensus 71 ~~~~~~-----------~-------~~~---------------~--~--~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~ 113 (241)
...-|+ + .+. . . ....+|.+++.+++++++....+++.|+|||
T Consensus 78 ~yLGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP 157 (209)
T COG4133 78 LYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEP 157 (209)
T ss_pred HHhhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCc
Confidence 000000 0 000 0 0 1122455678889999999999999999999
Q ss_pred CCHHhHHHHH-------HHHhCCcEEEEeecCCC
Q 026207 114 GTEAEAHACR-------SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 114 ~~~~d~~~~~-------~~~~~g~~vi~t~H~~~ 140 (241)
.+.+|.+... .-..+|-.|+.|+|..-
T Consensus 158 ~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l 191 (209)
T COG4133 158 FTALDKEGVALLTALMAAHAAQGGIVLLTTHQPL 191 (209)
T ss_pred ccccCHHHHHHHHHHHHHHhcCCCEEEEecCCcc
Confidence 9999985433 22345667888888774
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.1e-13 Score=116.01 Aligned_cols=64 Identities=14% Similarity=0.186 Sum_probs=50.9
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|.+++++..+++++..+|+++++|||++++|+.... .. ..+.++++++|... .+... +|+
T Consensus 147 LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~-~~~~tiii~sh~~~--------~~~~~---~~~ 214 (250)
T PRK14266 147 LSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKL-KEDYTIVIVTHNMQ--------QATRV---SKY 214 (250)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEECCHH--------HHHhh---cCE
Confidence 5667899999999999999999999999999995432 23 34789999999875 45555 777
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
+++
T Consensus 215 i~~ 217 (250)
T PRK14266 215 TSF 217 (250)
T ss_pred EEE
Confidence 654
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.9e-13 Score=111.25 Aligned_cols=113 Identities=14% Similarity=0.102 Sum_probs=75.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCCCC---------Ccccc---
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGDGD---------IPHSA--- 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~~~---------~~~~~--- 77 (241)
+++|.||||||||||++.|++..++..|. .+.|+.+...+..... .....
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~ 115 (207)
T cd03369 36 KIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYG 115 (207)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccCccHHHHhcccCCCCHHHHHH
Confidence 89999999999999999999998776442 2333332211110000 00000
Q ss_pred -ccchhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH------HHHhCCcEEEEeecCCC
Q 026207 78 -IGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR------SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 78 -~~~~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~------~~~~~g~~vi~t~H~~~ 140 (241)
.........+|++++++..+++++..+|+++++|||++++|+.... .....|.++|.++|...
T Consensus 116 ~l~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~ 185 (207)
T cd03369 116 ALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLR 185 (207)
T ss_pred HhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHH
Confidence 0000122345667899999999999999999999999999995433 11134789999999875
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.6e-13 Score=131.59 Aligned_cols=125 Identities=19% Similarity=0.261 Sum_probs=83.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcccc--CC--------------CeEEEEcCCcccCCCCCC------------cc----
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDE--FQ--------------KRVVIVDTSNEIGGDGDI------------PH---- 75 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~--~g--------------~~v~~i~~~~e~~~~~~~------------~~---- 75 (241)
+++|.||||||||||++.|++...+. .| .++.|+.+...+.....+ +.
T Consensus 96 ~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~ 175 (659)
T PLN03211 96 ILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTK 175 (659)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCH
Confidence 89999999999999999999998653 12 124455432211110000 00
Q ss_pred cc-----------ccch---------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhC
Q 026207 76 SA-----------IGTA---------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAER 128 (241)
Q Consensus 76 ~~-----------~~~~---------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~ 128 (241)
.. ++.. ......|+|++++..++.++..+|+++++|||++++|..... ..++.
T Consensus 176 ~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~ 255 (659)
T PLN03211 176 QEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQK 255 (659)
T ss_pred HHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhC
Confidence 00 0000 001236778899999999999999999999999999995432 33446
Q ss_pred CcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 129 GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 129 g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
|.++|.++|..+ . .+.++ +|++++
T Consensus 256 g~TvI~~sH~~~-~------~i~~~---~D~iil 279 (659)
T PLN03211 256 GKTIVTSMHQPS-S------RVYQM---FDSVLV 279 (659)
T ss_pred CCEEEEEecCCC-H------HHHHh---hceEEE
Confidence 899999999986 1 23455 677766
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.1e-13 Score=116.67 Aligned_cols=113 Identities=13% Similarity=0.032 Sum_probs=75.1
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCCC----CCccc-----cc--
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGDG----DIPHS-----AI-- 78 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~~----~~~~~-----~~-- 78 (241)
+++|+|+||||||||++.|++.+++..|. .+.|+.+...+.... ..+.. ..
T Consensus 49 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~ 128 (257)
T cd03288 49 KVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWE 128 (257)
T ss_pred EEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEECCCCcccccHHHHhcCcCCCCCHHHHHH
Confidence 89999999999999999999998876442 123333221111000 00000 00
Q ss_pred -----cch---h------------hcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH------HHHhCCcEE
Q 026207 79 -----GTA---R------------RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR------SIAERGVML 132 (241)
Q Consensus 79 -----~~~---~------------~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~------~~~~~g~~v 132 (241)
+.. . ....+|.+++++..+++++..+|+++++|||++++|+.... .....+.++
T Consensus 129 ~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~ti 208 (257)
T cd03288 129 ALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTV 208 (257)
T ss_pred HHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEE
Confidence 000 0 01235667899999999999999999999999999995433 112347899
Q ss_pred EEeecCCC
Q 026207 133 IGTAHGEW 140 (241)
Q Consensus 133 i~t~H~~~ 140 (241)
|+++|..+
T Consensus 209 ii~sh~~~ 216 (257)
T cd03288 209 VTIAHRVS 216 (257)
T ss_pred EEEecChH
Confidence 99999986
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.5e-13 Score=111.75 Aligned_cols=55 Identities=7% Similarity=0.096 Sum_probs=45.6
Q ss_pred CCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH---------HHHhCCcEEEEeecCCC
Q 026207 86 VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR---------SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~---------~~~~~g~~vi~t~H~~~ 140 (241)
.+|++++++..+++++..+|+++++|||++++|+.... ...+.|.++|+++|..+
T Consensus 140 ~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~ 203 (218)
T cd03290 140 NLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQ 203 (218)
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChH
Confidence 35667899999999999999999999999999995321 23345789999999986
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.6e-13 Score=116.59 Aligned_cols=115 Identities=17% Similarity=0.207 Sum_probs=90.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCcE
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEV 107 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~v 107 (241)
.++++|++|+||||++++++..+++. .+++++++..|+......+.+...+ .-...+........+.++++++||.
T Consensus 145 siii~G~t~sGKTt~lnall~~Ip~~--~rivtIEdt~E~~~~~~n~~~l~~r--~~~~~~~~v~~~dll~aalR~rPd~ 220 (312)
T COG0630 145 SIIICGGTASGKTTLLNALLDFIPPE--ERIVTIEDTPELKLPHENWVQLVTR--EGESGSSEVSLEDLLRAALRQRPDY 220 (312)
T ss_pred cEEEECCCCCCHHHHHHHHHHhCCch--hcEEEEeccccccCCCCCEEEEEec--CCCCCccccCHHHHHHHHHhcCCCe
Confidence 69999999999999999999999988 7999999998886441111111111 0011134579999999999999999
Q ss_pred EEEcCCCCHHhHHHHHHHHhCCcEEEEeecCCChhhhhcC
Q 026207 108 IIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKN 147 (241)
Q Consensus 108 lilDE~~~~~d~~~~~~~~~~g~~vi~t~H~~~~~~~~~~ 147 (241)
||++|+++.+ +....++..+||..++|.|+.+.+.++.+
T Consensus 221 IivgEvrg~e-~~~~~~a~~tGh~~isT~ha~s~~~~~~r 259 (312)
T COG0630 221 IIVGELRGRE-AFVLFQAMQTGHGTISTIHADSPELVLDR 259 (312)
T ss_pred EEEeeeecHH-HHHHHHHHhcCCCceeEEecCCHHHHHHH
Confidence 9999999886 56677888999999999999998777654
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=99.44 E-value=2e-13 Score=118.00 Aligned_cols=78 Identities=8% Similarity=0.069 Sum_probs=55.6
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTV 160 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V 160 (241)
+|.+++++..+++++..+|+++++|||++.+|+.... .....++++|+++|..+ .+. . ||+|
T Consensus 139 LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~--------~i~-~---~dri 206 (275)
T cd03289 139 LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIE--------AML-E---CQRF 206 (275)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHH--------HHH-h---CCEE
Confidence 6678899999999999999999999999999995432 11234789999999875 222 2 7887
Q ss_pred Ee-CChHHHHHHHHHhh
Q 026207 161 TL-GDEEARARRCQKSI 176 (241)
Q Consensus 161 ~~-~~~~~~~~~~~~~~ 176 (241)
+. .++.....+.++.+
T Consensus 207 ~vl~~G~i~~~g~~~~l 223 (275)
T cd03289 207 LVIEENKVRQYDSIQKL 223 (275)
T ss_pred EEecCCeEeecCCHHHH
Confidence 76 44433222344444
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.3e-13 Score=133.56 Aligned_cols=138 Identities=17% Similarity=0.185 Sum_probs=88.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCCC----------CCccccc-
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGDG----------DIPHSAI- 78 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~~----------~~~~~~~- 78 (241)
.++|+||+|||||||++.++|.+.|..|. .+.|+.+...+.... ......+
T Consensus 507 ~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~ 586 (710)
T TIGR03796 507 RVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLV 586 (710)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHH
Confidence 79999999999999999999999888553 223333221111000 0000000
Q ss_pred -----------------cchh----hcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH----HHHhCCcEEE
Q 026207 79 -----------------GTAR----RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR----SIAERGVMLI 133 (241)
Q Consensus 79 -----------------~~~~----~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~----~~~~~g~~vi 133 (241)
|... +-..+|+|++|+..+++++..+|+++++|||++.+|..... ...+.++|+|
T Consensus 587 ~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~~~~T~I 666 (710)
T TIGR03796 587 RACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRRRGCTCI 666 (710)
T ss_pred HHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHhcCCEEE
Confidence 0000 01225667899999999999999999999999999995433 2334689999
Q ss_pred EeecCCChhhhhcCCccccccccccEEEe-CChHHHHHHHHHhhh
Q 026207 134 GTAHGEWLENIIKNPILSDLIGGVDTVTL-GDEEARARRCQKSIL 177 (241)
Q Consensus 134 ~t~H~~~~~~~~~~p~l~~l~~~~d~V~~-~~~~~~~~~~~~~~k 177 (241)
.++|..+ .+. . ||+|+. .++.....+..+++.
T Consensus 667 iitHrl~--------~i~-~---~D~Iivl~~G~i~~~G~~~~Ll 699 (710)
T TIGR03796 667 IVAHRLS--------TIR-D---CDEIIVLERGKVVQRGTHEELW 699 (710)
T ss_pred EEecCHH--------HHH-h---CCEEEEEeCCEEEEecCHHHHH
Confidence 9999886 222 2 788887 444332224444443
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=8e-13 Score=121.89 Aligned_cols=123 Identities=18% Similarity=0.221 Sum_probs=86.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCC------------------CCCCcccccc----------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGG------------------DGDIPHSAIG---------- 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~------------------~~~~~~~~~~---------- 79 (241)
.+.|.|++|||||||++.++++..|+.| .+.+......... ....|+..++
T Consensus 319 ~lglVGeSGsGKSTlar~i~gL~~P~~G-~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~ 397 (539)
T COG1123 319 TLGLVGESGSGKSTLARILAGLLPPSSG-SIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIH 397 (539)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhh
Confidence 6999999999999999999999998743 3333221100000 0001111000
Q ss_pred ----c---------------------hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------H-HH
Q 026207 80 ----T---------------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------S-IA 126 (241)
Q Consensus 80 ----~---------------------~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~-~~ 126 (241)
. .++...+|+|++|+..+++++..+|++||+|||.+.+|+.... . -.
T Consensus 398 ~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~ 477 (539)
T COG1123 398 GGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQE 477 (539)
T ss_pred cccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHH
Confidence 0 0112346778899999999999999999999999999994332 2 23
Q ss_pred hCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 127 ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 127 ~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+.|.+.++.+|... .++++ ||+|.+
T Consensus 478 e~g~t~lfISHDl~--------vV~~i---~drv~v 502 (539)
T COG1123 478 ELGLTYLFISHDLA--------VVRYI---ADRVAV 502 (539)
T ss_pred HhCCEEEEEeCCHH--------HHHhh---CceEEE
Confidence 45999999999998 88888 999987
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.6e-13 Score=130.05 Aligned_cols=124 Identities=16% Similarity=0.246 Sum_probs=84.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC-------eEEEEcCCc-c-cCCC-C-C------Ccc---c-------cccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK-------RVVIVDTSN-E-IGGD-G-D------IPH---S-------AIGT 80 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-------~v~~i~~~~-e-~~~~-~-~------~~~---~-------~~~~ 80 (241)
+++|+||||||||||++.|++.+++..|. ++.|+.+.. + .... . . .+. . .++.
T Consensus 537 ~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl 616 (718)
T PLN03073 537 RIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGV 616 (718)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEeccccccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCC
Confidence 89999999999999999999999877442 344555321 0 0000 0 0 000 0 0000
Q ss_pred -----hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH---H-HHhCCcEEEEeecCCChhhhhcCCccc
Q 026207 81 -----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR---S-IAERGVMLIGTAHGEWLENIIKNPILS 151 (241)
Q Consensus 81 -----~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~---~-~~~~g~~vi~t~H~~~~~~~~~~p~l~ 151 (241)
......+|+|++++..+++++..+|+++++|||++++|+.... . ..+.+.++|+++|... .+.
T Consensus 617 ~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~~gtvIivSHd~~--------~i~ 688 (718)
T PLN03073 617 TGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLFQGGVLMVSHDEH--------LIS 688 (718)
T ss_pred ChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHH--------HHH
Confidence 0123446778999999999999999999999999999995443 2 2222348999999886 556
Q ss_pred cccccccEEEe
Q 026207 152 DLIGGVDTVTL 162 (241)
Q Consensus 152 ~l~~~~d~V~~ 162 (241)
.+ ||+++.
T Consensus 689 ~~---~drv~~ 696 (718)
T PLN03073 689 GS---VDELWV 696 (718)
T ss_pred Hh---CCEEEE
Confidence 66 788776
|
|
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.9e-13 Score=115.76 Aligned_cols=122 Identities=19% Similarity=0.200 Sum_probs=82.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEE----------EEcCCcccCC-----------------C-CCCccc---
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVV----------IVDTSNEIGG-----------------D-GDIPHS--- 76 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~----------~i~~~~e~~~-----------------~-~~~~~~--- 76 (241)
++.|.||||||||||++.+++..+++.|. +. .++ +.++.. . ...+..
T Consensus 28 ~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~-I~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 105 (255)
T cd03236 28 VLGLVGPNGIGKSTALKILAGKLKPNLGK-FDDPPDWDEILDEFR-GSELQNYFTKLLEGDVKVIVKPQYVDLIPKAVKG 105 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCCCce-Eeeccccchhhhhcc-CchhhhhhHHhhhcccceeeecchhccCchHHHH
Confidence 89999999999999999999999888554 32 122 111100 0 000000
Q ss_pred c----ccc----------h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHH-------HHH
Q 026207 77 A----IGT----------A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC-------RSI 125 (241)
Q Consensus 77 ~----~~~----------~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~-------~~~ 125 (241)
. +.. . .....+|.+++++..+++++..+|+++++|||++++|+... ...
T Consensus 106 ~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l 185 (255)
T cd03236 106 KVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIREL 185 (255)
T ss_pred HHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 0 000 0 01122455779999999999999999999999999999532 234
Q ss_pred HhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 126 AERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 126 ~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++.|+++|+++|... .+..+ ||+|+.
T Consensus 186 ~~~~~tIIiiSHd~~--------~~~~~---ad~i~~ 211 (255)
T cd03236 186 AEDDNYVLVVEHDLA--------VLDYL---SDYIHC 211 (255)
T ss_pred HhcCCEEEEEECCHH--------HHHHh---CCEEEE
Confidence 446899999999986 45555 777765
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.2e-13 Score=120.67 Aligned_cols=65 Identities=17% Similarity=0.162 Sum_probs=52.8
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTV 160 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V 160 (241)
+|+|++++..+++++..+|+++++|||++++|+.... .....++++|+++|... .+.++ ||+|
T Consensus 226 LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~--------~i~~~---~Dri 294 (329)
T PRK14257 226 LSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMA--------QAQRI---SDET 294 (329)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHH--------HHHHh---CCEE
Confidence 5567899999999999999999999999999995432 11234689999999987 56666 8888
Q ss_pred Ee
Q 026207 161 TL 162 (241)
Q Consensus 161 ~~ 162 (241)
++
T Consensus 295 iv 296 (329)
T PRK14257 295 VF 296 (329)
T ss_pred EE
Confidence 87
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.7e-13 Score=128.73 Aligned_cols=56 Identities=13% Similarity=0.162 Sum_probs=47.0
Q ss_pred CCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH----HHHhCCcEEEEeecCCC
Q 026207 85 QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR----SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~----~~~~~g~~vi~t~H~~~ 140 (241)
..+|+|++++..+++++..+|+++++|||++++|+.... .....+.++|+++|...
T Consensus 343 ~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tviivsHd~~ 402 (718)
T PLN03073 343 KTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHARE 402 (718)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHH
Confidence 346778899999999999999999999999999996554 23344789999999886
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.4e-13 Score=124.08 Aligned_cols=66 Identities=14% Similarity=0.103 Sum_probs=51.0
Q ss_pred CCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCC-cEEEEeecCCChhhhhcCCcccc-cccc
Q 026207 86 VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERG-VMLIGTAHGEWLENIIKNPILSD-LIGG 156 (241)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g-~~vi~t~H~~~~~~~~~~p~l~~-l~~~ 156 (241)
.+|+|++++..+++++..+|+++++|||++++|+.... ...+.| .++|+++|..+ .+.. +
T Consensus 401 ~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~--------~~~~~~--- 469 (490)
T PRK10938 401 SLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAE--------DAPACI--- 469 (490)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchh--------hhhhhh---
Confidence 35667899999999999999999999999999995443 333344 46999999986 4443 4
Q ss_pred ccEEEe
Q 026207 157 VDTVTL 162 (241)
Q Consensus 157 ~d~V~~ 162 (241)
+|++++
T Consensus 470 ~d~v~~ 475 (490)
T PRK10938 470 THRLEF 475 (490)
T ss_pred heeEEE
Confidence 677776
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=99.43 E-value=9.6e-13 Score=126.48 Aligned_cols=123 Identities=15% Similarity=0.181 Sum_probs=84.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC-------eEEEEcCCcccCCCC-----CC---------c---cccccc-h-
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK-------RVVIVDTSNEIGGDG-----DI---------P---HSAIGT-A- 81 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-------~v~~i~~~~e~~~~~-----~~---------~---~~~~~~-~- 81 (241)
.++|+||||||||||++.+++..++..|. ++.++.+...+.... .. + ...... .
T Consensus 480 ~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~ 559 (659)
T TIGR00954 480 HLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILD 559 (659)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHH
Confidence 79999999999999999999998876442 355555332111100 00 0 000000 0
Q ss_pred --------hh----------cCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH----HHHhCCcEEEEeecCC
Q 026207 82 --------RR----------MQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR----SIAERGVMLIGTAHGE 139 (241)
Q Consensus 82 --------~~----------~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~----~~~~~g~~vi~t~H~~ 139 (241)
.+ ...+|+|++|+..+++++.++|+++++|||++++|+.... ...+.|.++|+++|..
T Consensus 560 ~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~~~tvI~isH~~ 639 (659)
T TIGR00954 560 NVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFGITLFSVSHRK 639 (659)
T ss_pred HcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEeCch
Confidence 00 1346778999999999999999999999999999996443 2234588999999998
Q ss_pred ChhhhhcCCccccccccccEEEe
Q 026207 140 WLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 140 ~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+ .+ +. ||+++.
T Consensus 640 ~--------~~-~~---~d~il~ 650 (659)
T TIGR00954 640 S--------LW-KY---HEYLLY 650 (659)
T ss_pred H--------HH-Hh---CCEEEE
Confidence 6 22 33 788776
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.6e-13 Score=131.02 Aligned_cols=123 Identities=15% Similarity=0.171 Sum_probs=81.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCCC-------C--Cccccccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGDG-------D--IPHSAIGT 80 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~~-------~--~~~~~~~~ 80 (241)
.++|+||+|||||||++.+++.+.|..|. .+.++.+...+.... . .....+..
T Consensus 481 ~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~ 560 (686)
T TIGR03797 481 FVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWE 560 (686)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHH
Confidence 79999999999999999999999988553 122332221111000 0 00000000
Q ss_pred h------------------hhc----CCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH----HHHhCCcEEEE
Q 026207 81 A------------------RRM----QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR----SIAERGVMLIG 134 (241)
Q Consensus 81 ~------------------~~~----~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~----~~~~~g~~vi~ 134 (241)
+ ..+ ..+|+|++|+..+++++..+|+++++|||++.+|+.... ...+.+.|+|+
T Consensus 561 al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~~~T~Ii 640 (686)
T TIGR03797 561 AARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLKVTRIV 640 (686)
T ss_pred HHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhCCeEEE
Confidence 0 001 125667899999999999999999999999999995433 22333689999
Q ss_pred eecCCChhhhhcCCccccccccccEEEe
Q 026207 135 TAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 135 t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++|..+ .+. . +|+|+.
T Consensus 641 ItHr~~--------~i~-~---~D~Iiv 656 (686)
T TIGR03797 641 IAHRLS--------TIR-N---ADRIYV 656 (686)
T ss_pred EecChH--------HHH-c---CCEEEE
Confidence 999875 332 3 688877
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.9e-13 Score=116.40 Aligned_cols=110 Identities=19% Similarity=0.273 Sum_probs=78.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC--------------------CCCccccc------c--
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD--------------------GDIPHSAI------G-- 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~--------------------~~~~~~~~------~-- 79 (241)
+++|.|-+|||||||++++.+++.|+.|. +.++ +.++... ...|+... |
T Consensus 56 IfViMGLSGSGKSTLvR~~NrLiept~G~--ilv~-g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLe 132 (386)
T COG4175 56 IFVIMGLSGSGKSTLVRLLNRLIEPTRGE--ILVD-GKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLE 132 (386)
T ss_pred EEEEEecCCCCHHHHHHHHhccCCCCCce--EEEC-CcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhccee
Confidence 69999999999999999999999998665 4444 2222100 01111100 0
Q ss_pred ------------------------ch-hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHH--------HHHH
Q 026207 80 ------------------------TA-RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC--------RSIA 126 (241)
Q Consensus 80 ------------------------~~-~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~--------~~~~ 126 (241)
+. .+...+|++++|++.+++++..+|+++++||+++.+||... ..-+
T Consensus 133 v~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~ 212 (386)
T COG4175 133 VQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQA 212 (386)
T ss_pred ecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHH
Confidence 00 12334678899999999999999999999999999999322 2234
Q ss_pred hCCcEEEEeecCCC
Q 026207 127 ERGVMLIGTAHGEW 140 (241)
Q Consensus 127 ~~g~~vi~t~H~~~ 140 (241)
+..+|+++.+|..+
T Consensus 213 ~l~KTIvFitHDLd 226 (386)
T COG4175 213 KLKKTIVFITHDLD 226 (386)
T ss_pred HhCCeEEEEecCHH
Confidence 45789999999987
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.8e-13 Score=110.79 Aligned_cols=112 Identities=11% Similarity=0.116 Sum_probs=74.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCCC---------CCcccc---
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGDG---------DIPHSA--- 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~~---------~~~~~~--- 77 (241)
+++|.||||||||||++.|++..++..|. .+.|+.+...+.... ......
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~ 111 (221)
T cd03244 32 KVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQ 111 (221)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCccccchHHHHhCcCCCCCHHHHHH
Confidence 89999999999999999999998877442 123333221111000 000000
Q ss_pred ----ccc---h------------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcE
Q 026207 78 ----IGT---A------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVM 131 (241)
Q Consensus 78 ----~~~---~------------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~ 131 (241)
.+. . .....+|.+++++..+++++..+|+++++|||++++|+.... .. ..+.+
T Consensus 112 ~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~~~t 190 (221)
T cd03244 112 ALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREA-FKDCT 190 (221)
T ss_pred HHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCCE
Confidence 000 0 012335667899999999999999999999999999995433 22 24678
Q ss_pred EEEeecCCC
Q 026207 132 LIGTAHGEW 140 (241)
Q Consensus 132 vi~t~H~~~ 140 (241)
+|.++|...
T Consensus 191 ii~~sh~~~ 199 (221)
T cd03244 191 VLTIAHRLD 199 (221)
T ss_pred EEEEeCCHH
Confidence 999999875
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.4e-12 Score=111.03 Aligned_cols=64 Identities=16% Similarity=0.230 Sum_probs=51.6
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|++++++..+++++..+|+++++|||++++|+.... .. ..|.++|+++|... .+.++ ||+
T Consensus 150 LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tiiiisH~~~--------~~~~~---~d~ 217 (251)
T PRK14244 150 LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQEL-KKNFTIIVVTHSMK--------QAKKV---SDR 217 (251)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEeCCHH--------HHHhh---cCE
Confidence 4557799999999999999999999999999994332 33 34789999999886 45566 788
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
+++
T Consensus 218 i~~ 220 (251)
T PRK14244 218 VAF 220 (251)
T ss_pred EEE
Confidence 776
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.3e-13 Score=126.66 Aligned_cols=120 Identities=16% Similarity=0.191 Sum_probs=82.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC-CCCcccc-----------------------------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD-GDIPHSA----------------------------- 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~-~~~~~~~----------------------------- 77 (241)
++++.||+|+||||++..+.+.+.|..|. +.+| +..+..- ....+..
T Consensus 496 ~vALVGPSGsGKSTiasLL~rfY~PtsG~--IllD-G~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e 572 (716)
T KOG0058|consen 496 VVALVGPSGSGKSTIASLLLRFYDPTSGR--ILLD-GVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDE 572 (716)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCCCe--EEEC-CeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHH
Confidence 79999999999999999999999999654 4444 3222110 0000000
Q ss_pred -------------------ccchhhc----CCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHH---HHHHH---hC
Q 026207 78 -------------------IGTARRM----QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA---CRSIA---ER 128 (241)
Q Consensus 78 -------------------~~~~~~~----~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~---~~~~~---~~ 128 (241)
.|+...+ ..+|+|++||.++++|+..+|.++||||.++.+|++. +.++. ..
T Consensus 573 ~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~ 652 (716)
T KOG0058|consen 573 EIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ 652 (716)
T ss_pred HHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc
Confidence 0000001 1256678999999999999999999999999999942 22332 34
Q ss_pred CcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 129 GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 129 g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+.|++...|-.+ .+++ +|.|++
T Consensus 653 ~rTVlvIAHRLS--------TV~~----Ad~Ivv 674 (716)
T KOG0058|consen 653 GRTVLVIAHRLS--------TVRH----ADQIVV 674 (716)
T ss_pred CCeEEEEehhhh--------Hhhh----ccEEEE
Confidence 789999999987 5555 577776
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.7e-13 Score=128.53 Aligned_cols=126 Identities=14% Similarity=0.152 Sum_probs=82.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCCC-----CC--cc----cc-
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGDG-----DI--PH----SA- 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~~-----~~--~~----~~- 77 (241)
.++|+||+|||||||++.++|.++|..|. .+.|+++...+.... .. +. ..
T Consensus 371 ~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i 450 (582)
T PRK11176 371 TVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQI 450 (582)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHH
Confidence 79999999999999999999999887443 123333221111000 00 00 00
Q ss_pred ------cc-----------chhhc----CCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH------HHHhCCc
Q 026207 78 ------IG-----------TARRM----QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR------SIAERGV 130 (241)
Q Consensus 78 ------~~-----------~~~~~----~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~------~~~~~g~ 130 (241)
.+ .-..+ ..+|+|++|+..+++++..+|+++++|||++.+|+.... .....++
T Consensus 451 ~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~ 530 (582)
T PRK11176 451 EEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNR 530 (582)
T ss_pred HHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCC
Confidence 00 00001 125667899999999999999999999999999995433 1123478
Q ss_pred EEEEeecCCChhhhhcCCccccccccccEEEe-CCh
Q 026207 131 MLIGTAHGEWLENIIKNPILSDLIGGVDTVTL-GDE 165 (241)
Q Consensus 131 ~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~-~~~ 165 (241)
|+|.++|..+ .+ +. ||+|+. .++
T Consensus 531 tvI~VtHr~~--------~~-~~---~D~Ii~l~~g 554 (582)
T PRK11176 531 TSLVIAHRLS--------TI-EK---ADEILVVEDG 554 (582)
T ss_pred EEEEEecchH--------HH-Hh---CCEEEEEECC
Confidence 9999999885 22 33 788887 443
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.8e-13 Score=127.02 Aligned_cols=122 Identities=14% Similarity=0.138 Sum_probs=80.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCCC-------CCcc---cc--
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGDG-------DIPH---SA-- 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~~-------~~~~---~~-- 77 (241)
.++|+||+|||||||++.+++.+ |..|. .+.|+++...+.... ..+. ..
T Consensus 378 ~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~ 456 (588)
T PRK11174 378 RIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQ 456 (588)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHH
Confidence 79999999999999999999999 66443 233443322111100 0000 00
Q ss_pred -----------c-----cchhhc----CCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH------HHHhCCcE
Q 026207 78 -----------I-----GTARRM----QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR------SIAERGVM 131 (241)
Q Consensus 78 -----------~-----~~~~~~----~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~------~~~~~g~~ 131 (241)
+ |....+ ..+|+|++||..+++++..+|+++++|||++.+|.+... .....+.|
T Consensus 457 ~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~T 536 (588)
T PRK11174 457 QALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQT 536 (588)
T ss_pred HHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCE
Confidence 0 000011 125667899999999999999999999999999995443 11235789
Q ss_pred EEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 132 LIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 132 vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+|..+|..+ .+.+ +|.|+.
T Consensus 537 vIiItHrl~--------~i~~----aD~Iiv 555 (588)
T PRK11174 537 TLMVTHQLE--------DLAQ----WDQIWV 555 (588)
T ss_pred EEEEecChH--------HHHh----CCEEEE
Confidence 999999885 3322 688777
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.7e-12 Score=109.44 Aligned_cols=64 Identities=17% Similarity=0.195 Sum_probs=51.2
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|++++++..+++++..+|+++++|||++++|+.... +.. .+.++|+++|... .+..+ ||+
T Consensus 149 LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~~~tiiivsH~~~--------~~~~~---~d~ 216 (252)
T PRK14256 149 LSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELK-EKYTIIIVTHNMQ--------QAARV---SDY 216 (252)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH-hCCcEEEEECCHH--------HHHhh---CCE
Confidence 5667899999999999999999999999999995432 333 3678999999876 45556 788
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
+++
T Consensus 217 i~~ 219 (252)
T PRK14256 217 TAF 219 (252)
T ss_pred EEE
Confidence 776
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=8.2e-13 Score=119.67 Aligned_cols=125 Identities=16% Similarity=0.174 Sum_probs=89.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccC------------------CCeEEEEcCCcccCCCCCCccccccch--------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEF------------------QKRVVIVDTSNEIGGDGDIPHSAIGTA-------- 81 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~------------------g~~v~~i~~~~e~~~~~~~~~~~~~~~-------- 81 (241)
.+.|+||+|||||||.|.+.+..++.. |+.|.|+.+..|+.... + .+++.++
T Consensus 364 ~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GT-I-aeNIaRf~~~~d~~k 441 (580)
T COG4618 364 ALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGT-I-AENIARFGEEADPEK 441 (580)
T ss_pred eEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCc-H-HHHHHhccccCCHHH
Confidence 699999999999999999999998773 44556665555543211 0 0011110
Q ss_pred ----------------------hhc----CCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhH-------HHHHHHHhC
Q 026207 82 ----------------------RRM----QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-------HACRSIAER 128 (241)
Q Consensus 82 ----------------------~~~----~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~-------~~~~~~~~~ 128 (241)
..+ ..+|++++|+..+++++--+|.+++||||.+.+|. .++..++..
T Consensus 442 IieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~r 521 (580)
T COG4618 442 VIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKAR 521 (580)
T ss_pred HHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHc
Confidence 111 12456789999999999999999999999999988 234467888
Q ss_pred CcEEEEeecCCChhhhhcCCccccccccccEEEe-CChH
Q 026207 129 GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL-GDEE 166 (241)
Q Consensus 129 g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~-~~~~ 166 (241)
|.++++.+|-.+ +-.. +|.|++ .++.
T Consensus 522 G~~vvviaHRPs---------~L~~---~Dkilvl~~G~ 548 (580)
T COG4618 522 GGTVVVIAHRPS---------ALAS---VDKILVLQDGR 548 (580)
T ss_pred CCEEEEEecCHH---------HHhh---cceeeeecCCh
Confidence 999999999876 2222 788888 4443
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.2e-13 Score=128.07 Aligned_cols=121 Identities=20% Similarity=0.191 Sum_probs=82.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEE----------EEcCCcccC-------------C--CC---CCcc----
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVV----------IVDTSNEIG-------------G--DG---DIPH---- 75 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~----------~i~~~~e~~-------------~--~~---~~~~---- 75 (241)
++.|+||||||||||++.|+|.++|+.|. +. ++. +.++. . .. ..+.
T Consensus 101 v~gLvG~NGaGKSTLlkiL~G~l~p~~G~-i~~~~~~~~~~~~~~-G~~l~~~~~~~~~~~~~~~~~~q~~~~~p~~~~~ 178 (590)
T PRK13409 101 VTGILGPNGIGKTTAVKILSGELIPNLGD-YEEEPSWDEVLKRFR-GTELQNYFKKLYNGEIKVVHKPQYVDLIPKVFKG 178 (590)
T ss_pred EEEEECCCCCCHHHHHHHHhCCccCCCcc-ccCCCcHHHHHHHhC-ChHHHHHHHHHhccCcceeecccchhhhhhhhcc
Confidence 89999999999999999999999887554 21 021 11110 0 00 0000
Q ss_pred ---ccc------cc--------------hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HH
Q 026207 76 ---SAI------GT--------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SI 125 (241)
Q Consensus 76 ---~~~------~~--------------~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~ 125 (241)
..+ .. -+....+|++++|+..+++++..+|+++++|||++++|+.... ..
T Consensus 179 tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l 258 (590)
T PRK13409 179 KVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIREL 258 (590)
T ss_pred hHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 000 00 0123346678899999999999999999999999999995432 33
Q ss_pred HhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 126 AERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 126 ~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
.+ |.++|+++|..+ .+..+ +|+|++
T Consensus 259 ~~-g~tvIivsHd~~--------~l~~~---~D~v~v 283 (590)
T PRK13409 259 AE-GKYVLVVEHDLA--------VLDYL---ADNVHI 283 (590)
T ss_pred HC-CCEEEEEeCCHH--------HHHHh---CCEEEE
Confidence 44 899999999987 55555 666665
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=9.9e-13 Score=112.98 Aligned_cols=64 Identities=16% Similarity=0.194 Sum_probs=51.1
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|.+++++..+++++..+|+++++|||++++|+.... ..+ .+.++++++|... .+.++ ||+
T Consensus 162 LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~~~tiiivth~~~--------~~~~~---~d~ 229 (265)
T PRK14252 162 LSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLK-NKVTILIVTHNMQ--------QAARV---SDY 229 (265)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH-hCCEEEEEecCHH--------HHHHh---CCE
Confidence 4567899999999999999999999999999995432 233 3678999999886 55556 788
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
++.
T Consensus 230 i~~ 232 (265)
T PRK14252 230 TAY 232 (265)
T ss_pred EEE
Confidence 776
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.1e-13 Score=124.12 Aligned_cols=66 Identities=17% Similarity=0.143 Sum_probs=54.4
Q ss_pred CCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCcccccccccc
Q 026207 86 VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVD 158 (241)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d 158 (241)
.+|+|++++..+++++..+|+++|+|||++++|+.... ...+.|.++|+++|..+ .+..+ ||
T Consensus 396 ~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~--------~~~~~---~d 464 (501)
T PRK11288 396 NLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLP--------EVLGV---AD 464 (501)
T ss_pred cCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHH--------HHHhh---CC
Confidence 35667899999999999999999999999999995433 33556899999999987 56666 78
Q ss_pred EEEe
Q 026207 159 TVTL 162 (241)
Q Consensus 159 ~V~~ 162 (241)
+++.
T Consensus 465 ~i~~ 468 (501)
T PRK11288 465 RIVV 468 (501)
T ss_pred EEEE
Confidence 8775
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.7e-13 Score=132.12 Aligned_cols=120 Identities=21% Similarity=0.294 Sum_probs=84.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC---------CCCccc----------c--ccc------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD---------GDIPHS----------A--IGT------ 80 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~---------~~~~~~----------~--~~~------ 80 (241)
.++|.||+||||||++..+.+.+.|..|. +++| +.++..- +.+.+. + .|+
T Consensus 381 ~valVG~SGsGKST~i~LL~RfydP~~G~--V~id-G~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~ 457 (1228)
T KOG0055|consen 381 TVALVGPSGSGKSTLIQLLARFYDPTSGE--VLID-GEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATRE 457 (1228)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCCce--EEEc-CccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHH
Confidence 69999999999999999999999999765 6666 4333210 111110 0 000
Q ss_pred ----h------------------h----hcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH------HHHhC
Q 026207 81 ----A------------------R----RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR------SIAER 128 (241)
Q Consensus 81 ----~------------------~----~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~------~~~~~ 128 (241)
+ . +-..+|+|++||.++++++..+|++|+|||+++.+|++.-. .....
T Consensus 458 ~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~ 537 (1228)
T KOG0055|consen 458 EIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASK 537 (1228)
T ss_pred HHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhc
Confidence 0 0 01126778899999999999999999999999999994332 23345
Q ss_pred CcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 129 GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 129 g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
|.|.|.++|..+ .+++ +|.+++
T Consensus 538 grTTivVaHRLS--------tIrn----aD~I~v 559 (1228)
T KOG0055|consen 538 GRTTIVVAHRLS--------TIRN----ADKIAV 559 (1228)
T ss_pred CCeEEEEeeehh--------hhhc----cCEEEE
Confidence 889888889887 4444 477666
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.8e-13 Score=127.46 Aligned_cols=123 Identities=16% Similarity=0.179 Sum_probs=80.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCCC-------CCcc---ccc-
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGDG-------DIPH---SAI- 78 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~~-------~~~~---~~~- 78 (241)
.++|.||+|||||||++.+++.+++..|. .+.++.+...+.... ..+. ..+
T Consensus 368 ~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~ 447 (574)
T PRK11160 368 KVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALI 447 (574)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHH
Confidence 79999999999999999999999888553 122332211111000 0000 000
Q ss_pred ------cchh--------------hcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH------HHHhCCcEE
Q 026207 79 ------GTAR--------------RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR------SIAERGVML 132 (241)
Q Consensus 79 ------~~~~--------------~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~------~~~~~g~~v 132 (241)
+... +-..+|+|++|+..+++++..+|+++++|||++.+|+.... .....+.|+
T Consensus 448 ~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tv 527 (574)
T PRK11160 448 EVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTV 527 (574)
T ss_pred HHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 0000 11225667899999999999999999999999999995433 112357899
Q ss_pred EEeecCCChhhhhcCCccccccccccEEEe
Q 026207 133 IGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 133 i~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
|.++|..+ .+. . +|+|+.
T Consensus 528 iiitHr~~--------~~~-~---~d~i~~ 545 (574)
T PRK11160 528 LMITHRLT--------GLE-Q---FDRICV 545 (574)
T ss_pred EEEecChh--------HHH-h---CCEEEE
Confidence 99999886 332 2 688776
|
|
| >COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.7e-13 Score=114.94 Aligned_cols=113 Identities=19% Similarity=0.257 Sum_probs=90.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccch-hhc-CC-CCCcccHHHHHHHHHhcC
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTA-RRM-QV-PEPSLQHKVMIEAVENHM 104 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~-~~~-~~-~~~~~~~~~~~~~~l~~~ 104 (241)
.++++|.+|||||||++++++.++++ .++++++|..|+... +++..+. .+. .+ ..+...++.+...++++.
T Consensus 175 NILisGGTGSGKTTlLNal~~~i~~~--eRvItiEDtaELql~----~ph~vrL~TR~~n~Eg~gevtm~dLvkn~LRmR 248 (355)
T COG4962 175 NILISGGTGSGKTTLLNALSGFIDSD--ERVITIEDTAELQLA----HPHVVRLETRPPNVEGTGEVTMRDLVKNALRMR 248 (355)
T ss_pred eEEEeCCCCCCHHHHHHHHHhcCCCc--ccEEEEeehhhhccC----CCceEEEeecCCCCCCcceEEHHHHHHHHhhcC
Confidence 59999999999999999999999988 699999999988643 2221110 111 11 123679999999999999
Q ss_pred CcEEEEcCCCCHHhHHHHHHHHhCCcE-EEEeecCCChhhhhcC
Q 026207 105 PEVIIVDEIGTEAEAHACRSIAERGVM-LIGTAHGEWLENIIKN 147 (241)
Q Consensus 105 p~vlilDE~~~~~d~~~~~~~~~~g~~-vi~t~H~~~~~~~~~~ 147 (241)
||.||+.|++..+ +..+.++.++||- -++|.|+++..+++.+
T Consensus 249 PDRIiVGEVRG~E-a~dLL~AmnTGHdG~~~TlHans~~ea~~r 291 (355)
T COG4962 249 PDRIIVGEVRGVE-ALDLLQAMNTGHDGGMGTLHANSPREALTR 291 (355)
T ss_pred ccceEEEEecCcc-HHHHHHHhccCCCCcceeeccCCHHHHHHH
Confidence 9999999999775 6677788999998 6999999998777753
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1e-12 Score=103.91 Aligned_cols=113 Identities=17% Similarity=0.308 Sum_probs=78.5
Q ss_pred eccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccC---------------------CC-----CCCcccc-
Q 026207 25 IFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIG---------------------GD-----GDIPHSA- 77 (241)
Q Consensus 25 ~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~---------------------~~-----~~~~~~~- 77 (241)
...+++|+||+|||||||+++++.+++++.|. ++++ ++... ++ ...|.+.
T Consensus 28 ~Ge~iaitGPSG~GKStllk~va~Lisp~~G~--l~f~-Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVeDNlifP~~~r 104 (223)
T COG4619 28 AGEFIAITGPSGCGKSTLLKIVASLISPTSGT--LLFE-GEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIR 104 (223)
T ss_pred CCceEEEeCCCCccHHHHHHHHHhccCCCCce--EEEc-CccccccChHHHHHHHHHHHcCccccccchhhccccchHHh
Confidence 33489999999999999999999999999554 4444 22211 11 0001100
Q ss_pred ------------ccch--------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH--------HHHhCC
Q 026207 78 ------------IGTA--------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR--------SIAERG 129 (241)
Q Consensus 78 ------------~~~~--------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~--------~~~~~g 129 (241)
+.++ .++.-.|+|.+|+.++.+-+...|++++|||+++.+|+...+ .....+
T Consensus 105 ~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~ 184 (223)
T COG4619 105 NRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQN 184 (223)
T ss_pred ccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhc
Confidence 0000 123346778899999999999999999999999999984322 223667
Q ss_pred cEEEEeecCCC
Q 026207 130 VMLIGTAHGEW 140 (241)
Q Consensus 130 ~~vi~t~H~~~ 140 (241)
+.++-.+|..+
T Consensus 185 vAv~WiTHd~d 195 (223)
T COG4619 185 VAVLWITHDKD 195 (223)
T ss_pred eEEEEEecChH
Confidence 88999999886
|
|
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.7e-12 Score=102.81 Aligned_cols=116 Identities=21% Similarity=0.218 Sum_probs=81.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCC-CCCCcc-------ccccch------------------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGG-DGDIPH-------SAIGTA------------------ 81 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~-~~~~~~-------~~~~~~------------------ 81 (241)
.+.+.||+|+||||+++++-+.+.++.|. +.+....+... ....|+ ..+|+.
T Consensus 39 CvvL~G~SG~GKStllr~LYaNY~~d~G~--I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvae 116 (235)
T COG4778 39 CVVLHGPSGSGKSTLLRSLYANYLPDEGQ--ILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAE 116 (235)
T ss_pred EEEeeCCCCCcHHHHHHHHHhccCCCCce--EEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHh
Confidence 69999999999999999999999988654 22221111110 000011 001110
Q ss_pred --------------------hh-----------cCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhH-------HHHH
Q 026207 82 --------------------RR-----------MQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-------HACR 123 (241)
Q Consensus 82 --------------------~~-----------~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~-------~~~~ 123 (241)
.+ -..+|++.+|++.+++.+..+..++++|||++.+|+ +.+.
T Consensus 117 Pll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~ 196 (235)
T COG4778 117 PLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIR 196 (235)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHH
Confidence 01 123567889999999999999999999999999998 4455
Q ss_pred HHHhCCcEEEEeecCCChhhhh
Q 026207 124 SIAERGVMLIGTAHGEWLENII 145 (241)
Q Consensus 124 ~~~~~g~~vi~t~H~~~~~~~~ 145 (241)
+++..|..+++..|.....+..
T Consensus 197 e~Ka~GaAlvGIFHDeevre~v 218 (235)
T COG4778 197 EAKARGAALVGIFHDEEVREAV 218 (235)
T ss_pred HHHhcCceEEEeeccHHHHHHH
Confidence 7888999999999998754444
|
|
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=99.39 E-value=7.6e-13 Score=107.26 Aligned_cols=130 Identities=18% Similarity=0.087 Sum_probs=78.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC--------CCCccc--cccchh----hcCCCCCcccH
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD--------GDIPHS--AIGTAR----RMQVPEPSLQH 93 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~--------~~~~~~--~~~~~~----~~~~~~~~~~~ 93 (241)
+++|.||||+|||++..+++...... |.+++|++ .++.... +..... ..+... .....+.+..+
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~-g~~v~~~s-~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~ 78 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLAR-GEPGLYVT-LEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESS 78 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHC-CCcEEEEE-CCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhh
Confidence 47899999999999999887766544 68889987 4433210 000000 000000 00011222222
Q ss_pred ------HHHHHHHHhcCCcEEEEcCCCCHHh---H-------HHHHHHHhCCcEEEEeecCCChhhhhcCC-cccccccc
Q 026207 94 ------KVMIEAVENHMPEVIIVDEIGTEAE---A-------HACRSIAERGVMLIGTAHGEWLENIIKNP-ILSDLIGG 156 (241)
Q Consensus 94 ------~~~~~~~l~~~p~vlilDE~~~~~d---~-------~~~~~~~~~g~~vi~t~H~~~~~~~~~~p-~l~~l~~~ 156 (241)
..+.+.+...+|+++++|||+...+ . ..+...++.|++++++.|.....+....+ .++++
T Consensus 79 ~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~~~~~~~~~~~~--- 155 (187)
T cd01124 79 LRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEGTGFGGGDVEYL--- 155 (187)
T ss_pred hhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCCcccCcCceeEe---
Confidence 4455566678999999999998877 3 12224456799999999987632222222 57888
Q ss_pred ccEEEe
Q 026207 157 VDTVTL 162 (241)
Q Consensus 157 ~d~V~~ 162 (241)
||.|+.
T Consensus 156 aD~ii~ 161 (187)
T cd01124 156 VDGVIR 161 (187)
T ss_pred eeEEEE
Confidence 999886
|
A related protein is found in archaea. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.7e-12 Score=118.58 Aligned_cols=119 Identities=18% Similarity=0.263 Sum_probs=85.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC---------CCCccccc--------------------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD---------GDIPHSAI-------------------- 78 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~---------~~~~~~~~-------------------- 78 (241)
-+.|.|+|||||||+++.|.+... ..|. ++++ +.++..- +.+||...
T Consensus 380 kVaIvG~nGsGKSTilr~LlrF~d-~sG~--I~Id-G~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~e 455 (591)
T KOG0057|consen 380 KVAIVGSNGSGKSTILRLLLRFFD-YSGS--ILID-GQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDE 455 (591)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc-cCCc--EEEC-CeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHH
Confidence 599999999999999999999997 4455 5565 4443210 22232210
Q ss_pred --------------------cch----hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH------HHHhC
Q 026207 79 --------------------GTA----RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR------SIAER 128 (241)
Q Consensus 79 --------------------~~~----~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~------~~~~~ 128 (241)
|+. .|-..+|+|.+|+..+++++..+|+++++||+++.+|.+.-. .....
T Consensus 456 eV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~ 535 (591)
T KOG0057|consen 456 EVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMS 535 (591)
T ss_pred HHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcC
Confidence 000 012235678899999999999999999999999999985432 12356
Q ss_pred CcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 129 GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 129 g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
|.|+|+..|..+ .+.+ +|.|++
T Consensus 536 ~rTvI~IvH~l~--------ll~~----~DkI~~ 557 (591)
T KOG0057|consen 536 GRTVIMIVHRLD--------LLKD----FDKIIV 557 (591)
T ss_pred CCeEEEEEecch--------hHhc----CCEEEE
Confidence 899999999997 4444 699888
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.2e-12 Score=124.24 Aligned_cols=123 Identities=15% Similarity=0.112 Sum_probs=80.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCCC-------CCcc---cc--
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGDG-------DIPH---SA-- 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~~-------~~~~---~~-- 77 (241)
.++|.||+|||||||++.+++..++..|. .+.++.+...+.... ..+. ..
T Consensus 363 ~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~ 442 (585)
T TIGR01192 363 TVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVY 442 (585)
T ss_pred EEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHH
Confidence 79999999999999999999999887543 122332221111000 0000 00
Q ss_pred -----------c-----cch----hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH------HHHhCCcE
Q 026207 78 -----------I-----GTA----RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR------SIAERGVM 131 (241)
Q Consensus 78 -----------~-----~~~----~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~------~~~~~g~~ 131 (241)
+ +.. ..-..+|+|++|+..+++++..+|+++++|||++.+|+.... .....+.+
T Consensus 443 ~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~t 522 (585)
T TIGR01192 443 EAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRT 522 (585)
T ss_pred HHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCE
Confidence 0 000 011225667899999999999999999999999999995443 11235789
Q ss_pred EEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 132 LIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 132 vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+|.++|..+ .+ .. ||+|+.
T Consensus 523 vI~isH~~~--------~~-~~---~d~i~~ 541 (585)
T TIGR01192 523 TFIIAHRLS--------TV-RN---ADLVLF 541 (585)
T ss_pred EEEEEcChH--------HH-Hc---CCEEEE
Confidence 999999885 33 23 688776
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=99.38 E-value=1e-12 Score=123.70 Aligned_cols=113 Identities=13% Similarity=0.142 Sum_probs=75.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCCC-------CCc---cccc-
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGDG-------DIP---HSAI- 78 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~~-------~~~---~~~~- 78 (241)
.++|.||+|||||||++.+++.+++..|. .+.|+.+...+.... ..+ ...+
T Consensus 346 ~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~ 425 (544)
T TIGR01842 346 ALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKII 425 (544)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccHHHHHhccCCCCCHHHHH
Confidence 79999999999999999999999887543 123333221111000 000 0000
Q ss_pred ------c---chh------------hcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCc
Q 026207 79 ------G---TAR------------RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGV 130 (241)
Q Consensus 79 ------~---~~~------------~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~ 130 (241)
+ ... .-..+|+|++|+..+++++..+|+++++|||++.+|++... .....|.
T Consensus 426 ~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~ 505 (544)
T TIGR01842 426 EAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGI 505 (544)
T ss_pred HHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCC
Confidence 0 000 11235667899999999999999999999999999995433 2223578
Q ss_pred EEEEeecCCC
Q 026207 131 MLIGTAHGEW 140 (241)
Q Consensus 131 ~vi~t~H~~~ 140 (241)
++|.++|..+
T Consensus 506 tvi~ith~~~ 515 (544)
T TIGR01842 506 TVVVITHRPS 515 (544)
T ss_pred EEEEEeCCHH
Confidence 9999999875
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.9e-13 Score=108.02 Aligned_cols=138 Identities=16% Similarity=0.174 Sum_probs=91.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCC--CCccccccch------------------------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDG--DIPHSAIGTA------------------------ 81 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~--~~~~~~~~~~------------------------ 81 (241)
+-.|+||||+||||++-.|++...|+.|. ++++...++.... .+.+..+|+.
T Consensus 33 lr~lIGpNGAGKTT~mD~ItGKtrp~~G~--v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k 110 (249)
T COG4674 33 LRVLIGPNGAGKTTLMDVITGKTRPQEGE--VLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDK 110 (249)
T ss_pred EEEEECCCCCCceeeeeeecccCCCCcce--EEEcCchhhccCCHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCc
Confidence 78999999999999999999999988655 5555323332110 0000000000
Q ss_pred --------------------------------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH------
Q 026207 82 --------------------------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR------ 123 (241)
Q Consensus 82 --------------------------------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~------ 123 (241)
..-..+|.+.+|..-+..++.++|+++++|||.++.......
T Consensus 111 ~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl 190 (249)
T COG4674 111 SVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELL 190 (249)
T ss_pred chHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHH
Confidence 001224445677888888889999999999999886553222
Q ss_pred HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe-CChHHHHHHHHHhhhc
Q 026207 124 SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL-GDEEARARRCQKSILE 178 (241)
Q Consensus 124 ~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~-~~~~~~~~~~~~~~k~ 178 (241)
......++++.+-|.+. .++.+ ++.|.. .++...+.+.+.++.+
T Consensus 191 ~~la~~hsilVVEHDM~--------Fvr~~---A~~VTVlh~G~VL~EGsld~v~~ 235 (249)
T COG4674 191 KSLAGKHSILVVEHDMG--------FVREI---ADKVTVLHEGSVLAEGSLDEVQN 235 (249)
T ss_pred HHHhcCceEEEEeccHH--------HHHHh---hheeEEEeccceeecccHHHhhc
Confidence 33445788999999998 56666 777777 5555555566666654
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.2e-12 Score=125.09 Aligned_cols=66 Identities=18% Similarity=0.245 Sum_probs=53.7
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
.|++++++..++.++..+|+++++|||++++|+.... ..++.|.++|.++|..+ . .+.++ +|+
T Consensus 167 LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~-~------~i~~~---~D~ 236 (617)
T TIGR00955 167 LSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPS-S------ELFEL---FDK 236 (617)
T ss_pred cCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCC-H------HHHHH---hce
Confidence 6778899999999999999999999999999995433 44456899999999985 1 34455 777
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
+++
T Consensus 237 i~l 239 (617)
T TIGR00955 237 IIL 239 (617)
T ss_pred EEE
Confidence 776
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.1e-13 Score=127.80 Aligned_cols=123 Identities=16% Similarity=0.153 Sum_probs=81.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCC----------CCCcccc--
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGD----------GDIPHSA-- 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~----------~~~~~~~-- 77 (241)
.++|+||+|||||||++.+++.+.+..|. .+.|+.+...+... .......
T Consensus 493 ~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~ 572 (694)
T TIGR03375 493 KVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEIL 572 (694)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHH
Confidence 79999999999999999999999988553 22333322111000 0000000
Q ss_pred -----------c-----cchh----hcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH------HHHhCCcE
Q 026207 78 -----------I-----GTAR----RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR------SIAERGVM 131 (241)
Q Consensus 78 -----------~-----~~~~----~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~------~~~~~g~~ 131 (241)
+ |... +-..+|+|++|+..+++++..+|+++++|||++.+|++... .....++|
T Consensus 573 ~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T 652 (694)
T TIGR03375 573 RAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKT 652 (694)
T ss_pred HHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCE
Confidence 0 0000 01135667899999999999999999999999999995433 12235789
Q ss_pred EEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 132 LIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 132 vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+|.++|..+ .+ .. ||+|+.
T Consensus 653 ~iiItHrl~--------~~-~~---~D~iiv 671 (694)
T TIGR03375 653 LVLVTHRTS--------LL-DL---VDRIIV 671 (694)
T ss_pred EEEEecCHH--------HH-Hh---CCEEEE
Confidence 999999886 33 23 788877
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.3e-12 Score=119.27 Aligned_cols=118 Identities=19% Similarity=0.213 Sum_probs=81.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCC-------CeEEEEcCCcccCCC-----CCCcccc----------------cc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQ-------KRVVIVDTSNEIGGD-----GDIPHSA----------------IG 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g-------~~v~~i~~~~e~~~~-----~~~~~~~----------------~~ 79 (241)
-++|.||+|||||||+|+|+|..+-..| .++.++++..-+... -..|... ++
T Consensus 421 ~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~ 500 (604)
T COG4178 421 RLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLG 500 (604)
T ss_pred EEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcH
Confidence 7999999999999999999999986533 234555433222110 0011110 00
Q ss_pred c--------hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH----HHHh--CCcEEEEeecCCChhhhh
Q 026207 80 T--------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR----SIAE--RGVMLIGTAHGEWLENII 145 (241)
Q Consensus 80 ~--------~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~----~~~~--~g~~vi~t~H~~~~~~~~ 145 (241)
. .+.-.+++.|.+|+.++++++.++|+++||||.++.+|+.... ..++ .++++|.+.|..++....
T Consensus 501 ~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h 580 (604)
T COG4178 501 DLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFH 580 (604)
T ss_pred HHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhhHHHH
Confidence 0 0123457778899999999999999999999999999985433 2333 589999999999855444
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1e-12 Score=124.84 Aligned_cols=113 Identities=18% Similarity=0.183 Sum_probs=75.1
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCCC---------CCcccc---
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGDG---------DIPHSA--- 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~~---------~~~~~~--- 77 (241)
.++|+|++|||||||++.+++.+.|..|. ++.|+++...+.... ......
T Consensus 369 ~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~ 448 (592)
T PRK10790 369 FVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQ 448 (592)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCCCCCHHHHHH
Confidence 79999999999999999999999988543 122333221111100 000000
Q ss_pred ----ccc---hhh------------cCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH------HHHhCCcEE
Q 026207 78 ----IGT---ARR------------MQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR------SIAERGVML 132 (241)
Q Consensus 78 ----~~~---~~~------------~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~------~~~~~g~~v 132 (241)
.+. ..+ -..+|+|++|+..+++++..+|+++++|||++.+|++... .....++|+
T Consensus 449 a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tv 528 (592)
T PRK10790 449 ALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTL 528 (592)
T ss_pred HHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEE
Confidence 000 000 0125567899999999999999999999999999995433 112246899
Q ss_pred EEeecCCC
Q 026207 133 IGTAHGEW 140 (241)
Q Consensus 133 i~t~H~~~ 140 (241)
|.++|..+
T Consensus 529 IivtHr~~ 536 (592)
T PRK10790 529 VVIAHRLS 536 (592)
T ss_pred EEEecchH
Confidence 99999875
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.1e-12 Score=124.89 Aligned_cols=71 Identities=21% Similarity=0.274 Sum_probs=56.3
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHH-------HHHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC-------RSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~-------~~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
.+++.+.|+.++.=+.++|.++++|||++++|...+ +..++.|++||.|+|..+ ..+-++ .|.
T Consensus 171 iSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPs-------s~lf~l---FD~ 240 (613)
T KOG0061|consen 171 LSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPS-------SELFEL---FDK 240 (613)
T ss_pred cccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCc-------HHHHHH---HhH
Confidence 566789999999999999999999999999999433 355556999999999998 345556 677
Q ss_pred EEe-CChHH
Q 026207 160 VTL-GDEEA 167 (241)
Q Consensus 160 V~~-~~~~~ 167 (241)
+++ .++..
T Consensus 241 l~lLs~G~~ 249 (613)
T KOG0061|consen 241 LLLLSEGEV 249 (613)
T ss_pred hhhhcCCcE
Confidence 776 44443
|
|
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.3e-12 Score=98.26 Aligned_cols=54 Identities=20% Similarity=0.257 Sum_probs=46.0
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHH-------HHHHhCCcEEEEeecCCC
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC-------RSIAERGVMLIGTAHGEW 140 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~-------~~~~~~g~~vi~t~H~~~ 140 (241)
++++.+|++++++++.++|+++++|||++.+|++.. ++...+|++=++++|..+
T Consensus 142 lsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~ 202 (242)
T COG4161 142 LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVE 202 (242)
T ss_pred cccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehh
Confidence 466889999999999999999999999999999543 366778999777778776
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.3e-12 Score=123.58 Aligned_cols=124 Identities=15% Similarity=0.168 Sum_probs=82.1
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCCC-----------CCcccc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGDG-----------DIPHSA 77 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~~-----------~~~~~~ 77 (241)
..++|+|++|||||||++.++|...+..|. ++.|+++...+.... ......
T Consensus 359 ~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~ 438 (571)
T TIGR02203 359 ETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAE 438 (571)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHH
Confidence 389999999999999999999999887543 123333222111100 000000
Q ss_pred -------ccc---hhh--------c----CCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHHH------HHhCC
Q 026207 78 -------IGT---ARR--------M----QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRS------IAERG 129 (241)
Q Consensus 78 -------~~~---~~~--------~----~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~~------~~~~g 129 (241)
.+. ..+ + ..+|+|++|+..+++++..+|+++++|||++.+|...... ....+
T Consensus 439 i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~ 518 (571)
T TIGR02203 439 IERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQG 518 (571)
T ss_pred HHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCC
Confidence 000 000 1 1256788999999999999999999999999999954431 12347
Q ss_pred cEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 130 VMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 130 ~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+++|.++|..+ +.+. ||.|+.
T Consensus 519 ~tiIiitH~~~---------~~~~---~D~ii~ 539 (571)
T TIGR02203 519 RTTLVIAHRLS---------TIEK---ADRIVV 539 (571)
T ss_pred CEEEEEehhhH---------HHHh---CCEEEE
Confidence 89999999875 2233 788776
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.5e-12 Score=125.97 Aligned_cols=121 Identities=19% Similarity=0.234 Sum_probs=80.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc--------------------CCcccCCC----------CCCcccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD--------------------TSNEIGGD----------GDIPHSA 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~--------------------~~~e~~~~----------~~~~~~~ 77 (241)
.++|+|++|||||||++.+++...+..|. ++++ +...+... .......
T Consensus 485 ~vaivG~sGsGKSTL~~ll~g~~~p~~G~--I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~ 562 (694)
T TIGR01846 485 FIGIVGPSGSGKSTLTKLLQRLYTPQHGQ--VLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEH 562 (694)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCce--EEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHH
Confidence 79999999999999999999999887553 3333 11111000 0000000
Q ss_pred c------------------cch----hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH------HHHhCC
Q 026207 78 I------------------GTA----RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR------SIAERG 129 (241)
Q Consensus 78 ~------------------~~~----~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~------~~~~~g 129 (241)
+ |.- ..-..+|+|++|+..+++++..+|+++++|||++.+|+.... .....+
T Consensus 563 i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~ 642 (694)
T TIGR01846 563 VIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRG 642 (694)
T ss_pred HHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCC
Confidence 0 000 001225567899999999999999999999999999995433 112357
Q ss_pred cEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 130 VMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 130 ~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
.|+|.++|..+ .+ .. ||+|+.
T Consensus 643 ~t~i~itH~~~--------~~-~~---~d~ii~ 663 (694)
T TIGR01846 643 RTVIIIAHRLS--------TV-RA---CDRIIV 663 (694)
T ss_pred CEEEEEeCChH--------HH-Hh---CCEEEE
Confidence 89999999875 22 23 688776
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.4e-12 Score=120.76 Aligned_cols=113 Identities=12% Similarity=0.056 Sum_probs=75.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCC----------CCCcccccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGD----------GDIPHSAIG 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~----------~~~~~~~~~ 79 (241)
.++|+||+|||||||++.+++..++..|. .+.|+.+...+... .......+.
T Consensus 350 ~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~ 429 (529)
T TIGR02857 350 RVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIR 429 (529)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHH
Confidence 79999999999999999999999987543 12333322111100 000000000
Q ss_pred ch------------------h----hcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH------HHHhCCcE
Q 026207 80 TA------------------R----RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR------SIAERGVM 131 (241)
Q Consensus 80 ~~------------------~----~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~------~~~~~g~~ 131 (241)
.+ . .-...|+|++|+..+++++..+|+++++|||++.+|+.... .....++|
T Consensus 430 ~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t 509 (529)
T TIGR02857 430 RALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRT 509 (529)
T ss_pred HHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCE
Confidence 00 0 01225667899999999999999999999999999995433 11225789
Q ss_pred EEEeecCCC
Q 026207 132 LIGTAHGEW 140 (241)
Q Consensus 132 vi~t~H~~~ 140 (241)
+|..+|..+
T Consensus 510 ~i~itH~~~ 518 (529)
T TIGR02857 510 VLLVTHRLA 518 (529)
T ss_pred EEEEecCHH
Confidence 999999885
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.8e-12 Score=103.70 Aligned_cols=66 Identities=20% Similarity=0.185 Sum_probs=50.0
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccc
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDL 153 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l 153 (241)
+|++.+.|.-+.+++..+|++.|||||.+++|..++. ...+.|..++..+|...+-+.+. |...|+
T Consensus 145 FSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~-pD~vhv 217 (251)
T COG0396 145 FSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIK-PDKVHV 217 (251)
T ss_pred cCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcC-CCEEEE
Confidence 4567788989999999999999999999999996554 45567888888889876444442 544443
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.3e-12 Score=126.71 Aligned_cols=139 Identities=17% Similarity=0.198 Sum_probs=87.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCC----------CCCccccc-
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGD----------GDIPHSAI- 78 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~----------~~~~~~~~- 78 (241)
.++|+||+||||||+++.|++.+++..|. ++.|+.+...+... .......+
T Consensus 509 ~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~ 588 (711)
T TIGR00958 509 VVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIM 588 (711)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHH
Confidence 79999999999999999999999988543 22333322111110 00000000
Q ss_pred -----------------cchhhc----CCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH---H-HHhCCcEEE
Q 026207 79 -----------------GTARRM----QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR---S-IAERGVMLI 133 (241)
Q Consensus 79 -----------------~~~~~~----~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~---~-~~~~g~~vi 133 (241)
|.-..+ ...|+|++|+..+++++..+|+++|+|||++.+|++... + ....++|+|
T Consensus 589 ~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~~~~~~~~TvI 668 (711)
T TIGR00958 589 AAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESRSRASRTVL 668 (711)
T ss_pred HHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHHhhccCCCeEE
Confidence 000001 125667899999999999999999999999999995433 2 123578999
Q ss_pred EeecCCChhhhhcCCccccccccccEEEe-CChHHHHHHHHHhhhc
Q 026207 134 GTAHGEWLENIIKNPILSDLIGGVDTVTL-GDEEARARRCQKSILE 178 (241)
Q Consensus 134 ~t~H~~~~~~~~~~p~l~~l~~~~d~V~~-~~~~~~~~~~~~~~k~ 178 (241)
.++|..+ .+ .. +|+|+. .++.....+..+++.+
T Consensus 669 iItHrl~--------~i-~~---aD~IivL~~G~ive~Gt~~eL~~ 702 (711)
T TIGR00958 669 LIAHRLS--------TV-ER---ADQILVLKKGSVVEMGTHKQLME 702 (711)
T ss_pred EEeccHH--------HH-Hh---CCEEEEEECCEEEEeeCHHHHHh
Confidence 9999875 22 22 788877 4433322244444444
|
|
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.9e-12 Score=121.40 Aligned_cols=140 Identities=14% Similarity=0.088 Sum_probs=87.1
Q ss_pred CccccceeeEEEEE--eEEeeCcce--eecc-EEEEEeCCCchHHHHHHHHHHhccccCCC-------------------
Q 026207 1 MLRLRNVFLLIVKF--FYALYSINK--IIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------- 56 (241)
Q Consensus 1 ~~~~~~~~~~~~r~--~~~~~~~~~--~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------- 56 (241)
||+++|+..-.-.. ...++...+ +..| .++|.||||||||||++.+++..+++.|.
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 67788885321000 012343332 2233 89999999999999999999999876432
Q ss_pred ---eEEEEcCCcccCCCCC-------------Ccccc-ccc----hh----------hcCCCCCcccHHHHHHHHHhcCC
Q 026207 57 ---RVVIVDTSNEIGGDGD-------------IPHSA-IGT----AR----------RMQVPEPSLQHKVMIEAVENHMP 105 (241)
Q Consensus 57 ---~v~~i~~~~e~~~~~~-------------~~~~~-~~~----~~----------~~~~~~~~~~~~~~~~~~l~~~p 105 (241)
.+.|+.+...+..... ..... ... .. ....+|.+++++..+++++..+|
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P 163 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGG 163 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 1333332221111000 00000 000 00 12235667899999999999999
Q ss_pred cEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCC
Q 026207 106 EVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 106 ~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~ 140 (241)
+++++|||++++|+.... ...+.|.+++.++|..+
T Consensus 164 ~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~ 205 (648)
T PRK10535 164 QVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQ 205 (648)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHH
Confidence 999999999999995443 33446899999999886
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.8e-12 Score=116.10 Aligned_cols=120 Identities=15% Similarity=0.168 Sum_probs=82.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCC---------CCccc----------c-----------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDG---------DIPHS----------A----------- 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~---------~~~~~----------~----------- 77 (241)
-+.|.|++||||||++..+++.+.++.|. +.++ +.++.... ..++. +
T Consensus 366 kvAIlG~SGsGKSTllqLl~~~~~~~~G~--i~~~-g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDE 442 (573)
T COG4987 366 KVAILGRSGSGKSTLLQLLAGAWDPQQGS--ITLN-GVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDE 442 (573)
T ss_pred eEEEECCCCCCHHHHHHHHHhccCCCCCe--eeEC-CcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHH
Confidence 49999999999999999999999888654 4443 22211100 00110 0
Q ss_pred --------cc-----------chhhc----CCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH------HHHhC
Q 026207 78 --------IG-----------TARRM----QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR------SIAER 128 (241)
Q Consensus 78 --------~~-----------~~~~~----~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~------~~~~~ 128 (241)
.+ ...++ .-+|+|.++|..+++++.++.+++++|||+.++|+..-. .+...
T Consensus 443 el~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~ 522 (573)
T COG4987 443 ELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE 522 (573)
T ss_pred HHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc
Confidence 00 00011 124567799999999999999999999999999995433 33445
Q ss_pred CcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 129 GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 129 g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
|+|+++++|... .++++ |+|++
T Consensus 523 ~kTll~vTHrL~--------~le~~----drIiv 544 (573)
T COG4987 523 GKTLLMVTHRLR--------GLERM----DRIIV 544 (573)
T ss_pred CCeEEEEecccc--------cHhhc----CEEEE
Confidence 899999999886 56664 99887
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.5e-12 Score=123.73 Aligned_cols=123 Identities=15% Similarity=0.177 Sum_probs=81.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCCC-------CCc---ccc--
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGDG-------DIP---HSA-- 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~~-------~~~---~~~-- 77 (241)
.++|+|++|||||||++.+++..+|..|. ++.|+++...+.... ..+ ...
T Consensus 363 ~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~ 442 (588)
T PRK13657 363 TVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMR 442 (588)
T ss_pred EEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHH
Confidence 79999999999999999999999887442 334443322211100 000 000
Q ss_pred -----------c-----cchhhc----CCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH------HHHhCCcE
Q 026207 78 -----------I-----GTARRM----QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR------SIAERGVM 131 (241)
Q Consensus 78 -----------~-----~~~~~~----~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~------~~~~~g~~ 131 (241)
+ |.-..+ ..+|+|.+||..+++++..+|+++++|||++.+|+.... .....++|
T Consensus 443 ~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~t 522 (588)
T PRK13657 443 AAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRT 522 (588)
T ss_pred HHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCE
Confidence 0 000001 125667899999999999999999999999999995443 11224789
Q ss_pred EEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 132 LIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 132 vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+|.++|..+ .+ .. +|+|+.
T Consensus 523 vIiitHr~~--------~~-~~---~D~ii~ 541 (588)
T PRK13657 523 TFIIAHRLS--------TV-RN---ADRILV 541 (588)
T ss_pred EEEEEecHH--------HH-Hh---CCEEEE
Confidence 999999885 22 23 688776
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.7e-12 Score=118.74 Aligned_cols=113 Identities=13% Similarity=0.204 Sum_probs=80.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCC-------CeEEEEcCCccc-CCCC--------CCc---cc----cccc----
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQ-------KRVVIVDTSNEI-GGDG--------DIP---HS----AIGT---- 80 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g-------~~v~~i~~~~e~-~~~~--------~~~---~~----~~~~---- 80 (241)
-+.|+||||+|||||++.|++.+.+..| .++.|+++..+- .... ..+ .. .+++
T Consensus 350 riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~ 429 (530)
T COG0488 350 RIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFT 429 (530)
T ss_pred EEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCC
Confidence 6999999999999999999888876633 346677654421 1110 000 00 0111
Q ss_pred ----hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH---HH-HhCCcEEEEeecCCC
Q 026207 81 ----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR---SI-AERGVMLIGTAHGEW 140 (241)
Q Consensus 81 ----~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~---~~-~~~g~~vi~t~H~~~ 140 (241)
...+..+|+|.+.|..++.++..+|.++|||||++.+|..... .+ .+-.-+||+++|...
T Consensus 430 ~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~Gtvl~VSHDr~ 497 (530)
T COG0488 430 GEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFEGTVLLVSHDRY 497 (530)
T ss_pred hHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 0235568889999999999999999999999999999996554 22 334567889999987
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.5e-12 Score=116.81 Aligned_cols=123 Identities=11% Similarity=0.090 Sum_probs=80.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCCCC-------Cc---cc---
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGDGD-------IP---HS--- 76 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~~~-------~~---~~--- 76 (241)
.+.|.|++|||||||++.++|..++..|. ++.++++..-+..... .+ ..
T Consensus 349 ~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~ 428 (559)
T COG4988 349 LTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEII 428 (559)
T ss_pred EEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHH
Confidence 79999999999999999999999977443 1223322111110000 00 00
Q ss_pred --------------cccchhhcC----CCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH------HHHhCCcEE
Q 026207 77 --------------AIGTARRMQ----VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR------SIAERGVML 132 (241)
Q Consensus 77 --------------~~~~~~~~~----~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~------~~~~~g~~v 132 (241)
..|.-..++ -.|+|+.||.++++++..+++++++|||++.+|++.-. .....+.|+
T Consensus 429 ~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktv 508 (559)
T COG4988 429 AALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTV 508 (559)
T ss_pred HHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeE
Confidence 000000111 14556799999999999999999999999999995432 223346899
Q ss_pred EEeecCCChhhhhcCCccccccccccEEEe
Q 026207 133 IGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 133 i~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++.+|... .+.+ +|+|++
T Consensus 509 l~itHrl~--------~~~~----~D~I~v 526 (559)
T COG4988 509 LVITHRLE--------DAAD----ADRIVV 526 (559)
T ss_pred EEEEcChH--------HHhc----CCEEEE
Confidence 99999885 3333 588887
|
|
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.5e-12 Score=105.36 Aligned_cols=113 Identities=19% Similarity=0.352 Sum_probs=79.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC------------------CCCcc--------------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD------------------GDIPH-------------- 75 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~------------------~~~~~-------------- 75 (241)
++.++|.||+|||||++.++|.+.++.|+ +.|+ +.++... +..+.
T Consensus 34 FvtViGsNGAGKSTlln~iaG~l~~t~G~--I~Id-g~dVtk~~~~~RA~~larVfQdp~~gt~~~lTieENl~la~~Rg 110 (263)
T COG1101 34 FVTVIGSNGAGKSTLLNAIAGDLKPTSGQ--ILID-GVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRG 110 (263)
T ss_pred eEEEEcCCCccHHHHHHHhhCccccCCce--EEEC-ceecccCCHHHHhhHHHHHhcchhhCCcccccHHHHHHHHHhcC
Confidence 89999999999999999999999999665 4444 2221110 00000
Q ss_pred ------c-----------------cccc----hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-----
Q 026207 76 ------S-----------------AIGT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR----- 123 (241)
Q Consensus 76 ------~-----------------~~~~----~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~----- 123 (241)
. ..|. ..+++.+|++++|...+..+-.+.|+++++||=++.+||....
T Consensus 111 ~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~l 190 (263)
T COG1101 111 KKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMEL 190 (263)
T ss_pred cccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHH
Confidence 0 0000 0135667888899999999999999999999999999995443
Q ss_pred ---HHHhCCcEEEEeecCCChhhhh
Q 026207 124 ---SIAERGVMLIGTAHGEWLENII 145 (241)
Q Consensus 124 ---~~~~~g~~vi~t~H~~~~~~~~ 145 (241)
-..+...|.++++|.+ ++++
T Consensus 191 T~kiV~~~klTtlMVTHnm--~~Al 213 (263)
T COG1101 191 TAKIVEEHKLTTLMVTHNM--EDAL 213 (263)
T ss_pred HHHHHHhcCCceEEEeccH--HHHH
Confidence 2345678888888988 4444
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.1e-12 Score=129.36 Aligned_cols=54 Identities=17% Similarity=0.287 Sum_probs=46.2
Q ss_pred CCCcccHHHHHHHHHhcCCc-EEEEcCCCCHHhHHHH-------HHHHhCCcEEEEeecCCC
Q 026207 87 PEPSLQHKVMIEAVENHMPE-VIIVDEIGTEAEAHAC-------RSIAERGVMLIGTAHGEW 140 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~-vlilDE~~~~~d~~~~-------~~~~~~g~~vi~t~H~~~ 140 (241)
+|+|++++..++.++..+|+ ++++|||++++|.... ++.++.|.+||.++|..+
T Consensus 902 LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~ 963 (1394)
T TIGR00956 902 LNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPS 963 (1394)
T ss_pred CCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCC
Confidence 56688999999999999997 9999999999999543 244567999999999986
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.5e-12 Score=121.72 Aligned_cols=113 Identities=18% Similarity=0.155 Sum_probs=74.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCC----------CCCcccccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGD----------GDIPHSAIG 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~----------~~~~~~~~~ 79 (241)
.++|.||||||||||++.+++.++|..|. .+.++.+...+... .......+.
T Consensus 343 ~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~ 422 (569)
T PRK10789 343 MLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIE 422 (569)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHH
Confidence 79999999999999999999999887543 12233221111100 000000000
Q ss_pred ch----------hh------------cCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH------HHHhCCcE
Q 026207 80 TA----------RR------------MQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR------SIAERGVM 131 (241)
Q Consensus 80 ~~----------~~------------~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~------~~~~~g~~ 131 (241)
.+ .+ -..+|+|++|+..+++++..+|+++++|||++.+|+.... .....|.|
T Consensus 423 ~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t 502 (569)
T PRK10789 423 HVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRT 502 (569)
T ss_pred HHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCE
Confidence 00 00 1125667899999999999999999999999999995433 11235889
Q ss_pred EEEeecCCC
Q 026207 132 LIGTAHGEW 140 (241)
Q Consensus 132 vi~t~H~~~ 140 (241)
+|.++|..+
T Consensus 503 ii~itH~~~ 511 (569)
T PRK10789 503 VIISAHRLS 511 (569)
T ss_pred EEEEecchh
Confidence 999999875
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.9e-12 Score=125.44 Aligned_cols=123 Identities=12% Similarity=0.128 Sum_probs=81.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCC-----------CCCccccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGD-----------GDIPHSAI 78 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~-----------~~~~~~~~ 78 (241)
.++|+||+|||||||++.+++.+.|+.|. ++.|+.+...+... .......+
T Consensus 502 ~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i 581 (708)
T TIGR01193 502 KTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEI 581 (708)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHH
Confidence 79999999999999999999999888543 23344322211100 00000000
Q ss_pred ------------------cchhhc----CCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH---H-H-HhCCcE
Q 026207 79 ------------------GTARRM----QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR---S-I-AERGVM 131 (241)
Q Consensus 79 ------------------~~~~~~----~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~---~-~-~~~g~~ 131 (241)
|.-..+ ..+|+|++|+..+++++..+|+++++|||++.+|++... + . ...|.|
T Consensus 582 ~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~~~~T 661 (708)
T TIGR01193 582 WAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDKT 661 (708)
T ss_pred HHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCE
Confidence 000001 124667899999999999999999999999999995432 1 1 124789
Q ss_pred EEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 132 LIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 132 vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+|.++|..+ .+ .. ||+|+.
T Consensus 662 ~IiitHr~~--------~~-~~---~D~i~~ 680 (708)
T TIGR01193 662 IIFVAHRLS--------VA-KQ---SDKIIV 680 (708)
T ss_pred EEEEecchH--------HH-Hc---CCEEEE
Confidence 999999986 33 23 788887
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.2e-12 Score=118.57 Aligned_cols=113 Identities=12% Similarity=0.127 Sum_probs=74.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCCCC------Ccccc------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGDGD------IPHSA------ 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~~~------~~~~~------ 77 (241)
.++|.||+|||||||++.++|.++++.|. .+.++.+...+..... .....
T Consensus 351 ~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~ 430 (547)
T PRK10522 351 LLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPEGKPANPALVEKWLE 430 (547)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccccCchHHHHHHHHHH
Confidence 79999999999999999999999887443 1223322111110000 00000
Q ss_pred ---ccchhh-------cCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HH-HhCCcEEEEeecCC
Q 026207 78 ---IGTARR-------MQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SI-AERGVMLIGTAHGE 139 (241)
Q Consensus 78 ---~~~~~~-------~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~-~~~g~~vi~t~H~~ 139 (241)
.+.... -..+|+|++|+..+++++..+|+++++|||++.+|++... .. +..|.|+|.++|..
T Consensus 431 ~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~ 510 (547)
T PRK10522 431 RLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDD 510 (547)
T ss_pred HcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEech
Confidence 000000 0135668899999999999999999999999999995433 11 22488999999976
Q ss_pred C
Q 026207 140 W 140 (241)
Q Consensus 140 ~ 140 (241)
+
T Consensus 511 ~ 511 (547)
T PRK10522 511 H 511 (547)
T ss_pred H
Confidence 4
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.6e-12 Score=119.62 Aligned_cols=111 Identities=13% Similarity=0.143 Sum_probs=74.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC-----------------eEEEEcCCcccCCCC-------CCc---ccc---
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK-----------------RVVIVDTSNEIGGDG-------DIP---HSA--- 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-----------------~v~~i~~~~e~~~~~-------~~~---~~~--- 77 (241)
.++|.||+|||||||++.+++.++++.|. .+.|+++..-+.... ..+ ...
T Consensus 363 ~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~ 442 (529)
T TIGR02868 363 RVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWA 442 (529)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHH
Confidence 79999999999999999999999988554 233443222111100 000 000
Q ss_pred ----------c-----cchhhc----CCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH---H---HHhCCcEE
Q 026207 78 ----------I-----GTARRM----QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR---S---IAERGVML 132 (241)
Q Consensus 78 ----------~-----~~~~~~----~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~---~---~~~~g~~v 132 (241)
+ |.-..+ ..+|+|++||..+++++..+|+++++|||++.+|++... + ....++|+
T Consensus 443 al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~Tv 522 (529)
T TIGR02868 443 ALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTV 522 (529)
T ss_pred HHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 0 000001 125667899999999999999999999999999995443 1 12357899
Q ss_pred EEeecC
Q 026207 133 IGTAHG 138 (241)
Q Consensus 133 i~t~H~ 138 (241)
|+++|.
T Consensus 523 IiItHr 528 (529)
T TIGR02868 523 VVITHH 528 (529)
T ss_pred EEEecC
Confidence 999895
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.1e-12 Score=103.23 Aligned_cols=130 Identities=13% Similarity=0.114 Sum_probs=77.0
Q ss_pred EEEEEeEEeeCc--ceeeccEEEEEeCCCchHHHHHHHHHHhccccCC------------------------CeEEEEcC
Q 026207 10 LIVKFFYALYSI--NKIIFDFFLSYFRPGVGKTTVMREIARVLSDEFQ------------------------KRVVIVDT 63 (241)
Q Consensus 10 ~~~r~~~~~~~~--~~~~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g------------------------~~v~~i~~ 63 (241)
+.+..++..-.. .....|+++|+||||||||||++++++.+.+..+ .++.++.+
T Consensus 4 ~~~~~fr~~~~~~~l~~~~g~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq 83 (197)
T cd03278 4 LELKGFKSFADKTTIPFPPGLTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFD 83 (197)
T ss_pred EEEeCCcCcCCCeeeecCCCcEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEE
Confidence 344555443122 2445579999999999999999999988643210 12222221
Q ss_pred CcccCC---CCCCccccc---c-chhhcCCCCCcccHHHHHHHHHh----cCCcEEEEcCCCCHHhHHHHH-------HH
Q 026207 64 SNEIGG---DGDIPHSAI---G-TARRMQVPEPSLQHKVMIEAVEN----HMPEVIIVDEIGTEAEAHACR-------SI 125 (241)
Q Consensus 64 ~~e~~~---~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~l~----~~p~vlilDE~~~~~d~~~~~-------~~ 125 (241)
...... ........+ . .......+|.+++++..++.++. ..|+++++|||++++|+.... +.
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~ 163 (197)
T cd03278 84 NSDGRYSIISQGDVSEIIEAPGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEF 163 (197)
T ss_pred cCCCceeEEehhhHHHHHhCCCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHh
Confidence 111100 000000000 0 00123345667899999998875 456999999999999985433 22
Q ss_pred HhCCcEEEEeecCCC
Q 026207 126 AERGVMLIGTAHGEW 140 (241)
Q Consensus 126 ~~~g~~vi~t~H~~~ 140 (241)
..+.++|+++|...
T Consensus 164 -~~~~tiIiitH~~~ 177 (197)
T cd03278 164 -SKETQFIVITHRKG 177 (197)
T ss_pred -ccCCEEEEEECCHH
Confidence 23688999999985
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.9e-12 Score=120.12 Aligned_cols=120 Identities=14% Similarity=0.226 Sum_probs=81.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC---------CCCccc-------------------ccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD---------GDIPHS-------------------AIG 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~---------~~~~~~-------------------~~~ 79 (241)
.++|+||+|||||||++.+++...++.|. ++++ +.++... ..+++. ...
T Consensus 370 ~~aivG~sGsGKSTl~~ll~g~~~p~~G~--i~~~-g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~ 446 (555)
T TIGR01194 370 IVFIVGENGCGKSTLAKLFCGLYIPQEGE--ILLD-GAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQ 446 (555)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcE--EEEC-CEECCCCCHHHHHhhCcEEccChhhhhhhhhcccccchhHHHHH
Confidence 79999999999999999999999888554 3343 2211100 000000 000
Q ss_pred -chhh----------------cCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH--------HHHhCCcEEEE
Q 026207 80 -TARR----------------MQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR--------SIAERGVMLIG 134 (241)
Q Consensus 80 -~~~~----------------~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~--------~~~~~g~~vi~ 134 (241)
.+.. ...+|+|++|+..+++++..+|+++++|||++.+|++... ..+..|.|+|.
T Consensus 447 ~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiii 526 (555)
T TIGR01194 447 QYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIII 526 (555)
T ss_pred HHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 0000 1235678899999999999999999999999999995432 12245899999
Q ss_pred eecCCChhhhhcCCccccccccccEEEe
Q 026207 135 TAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 135 t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++|..+ .+ .. ||+|+.
T Consensus 527 isH~~~--------~~-~~---~d~i~~ 542 (555)
T TIGR01194 527 ISHDDQ--------YF-EL---ADQIIK 542 (555)
T ss_pred EeccHH--------HH-Hh---CCEEEE
Confidence 999764 22 23 788776
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.2e-12 Score=104.17 Aligned_cols=113 Identities=14% Similarity=0.174 Sum_probs=64.8
Q ss_pred Ccceeecc--EEEEEeCCCchHHHHHHHHH-HhccccCCC--------eEEEEcCCcccCCCCCCccccccchhhcCCCC
Q 026207 20 SINKIIFD--FFLSYFRPGVGKTTVMREIA-RVLSDEFQK--------RVVIVDTSNEIGGDGDIPHSAIGTARRMQVPE 88 (241)
Q Consensus 20 ~~~~~~~g--~vll~Gp~GsGKTTLl~~l~-~~l~~~~g~--------~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~ 88 (241)
....+..+ +++|+||||+|||||++.++ ..+..+.|. .+.++++-.+... ..... ...+..++
T Consensus 20 ~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~~~~~~~~~~~~lg----~~~~l--~~~~s~fs 93 (200)
T cd03280 20 LDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGSSLPVFENIFADIG----DEQSI--EQSLSTFS 93 (200)
T ss_pred ceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccccCcCccEEEEecC----chhhh--hcCcchHH
Confidence 34455555 79999999999999999998 222112111 1111110000000 00000 01123334
Q ss_pred CcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHH--------HHHHhCCcEEEEeecCC
Q 026207 89 PSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC--------RSIAERGVMLIGTAHGE 139 (241)
Q Consensus 89 ~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~--------~~~~~~g~~vi~t~H~~ 139 (241)
.++++...+..+ ..+|+++++|||+++.|+... ....+.|.+++.++|..
T Consensus 94 ~g~~~~~~i~~~-~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~ 151 (200)
T cd03280 94 SHMKNIARILQH-ADPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHYG 151 (200)
T ss_pred HHHHHHHHHHHh-CCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHH
Confidence 456665555444 478999999999999998432 13344588999999964
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.5e-11 Score=102.33 Aligned_cols=66 Identities=12% Similarity=0.010 Sum_probs=49.7
Q ss_pred CCCCcccHHHHHHHHHhc----------CCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCC
Q 026207 86 VPEPSLQHKVMIEAVENH----------MPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNP 148 (241)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~----------~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p 148 (241)
.++.+++++..++.++.. +|+++++|||++.+|+.... ...+.|.++++++|...
T Consensus 123 ~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~-------- 194 (213)
T cd03279 123 TLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEE-------- 194 (213)
T ss_pred ccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchH--------
Confidence 356678999999888864 67899999999999984332 33445889999999776
Q ss_pred ccccccccccEEEe
Q 026207 149 ILSDLIGGVDTVTL 162 (241)
Q Consensus 149 ~l~~l~~~~d~V~~ 162 (241)
.+..+ +|++.+
T Consensus 195 ~~~~~---~~~i~~ 205 (213)
T cd03279 195 LKERI---PQRLEV 205 (213)
T ss_pred HHHhh---CcEEEE
Confidence 44555 677766
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.6e-12 Score=119.40 Aligned_cols=123 Identities=15% Similarity=0.178 Sum_probs=80.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCCC-------CCcc---cc--
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGDG-------DIPH---SA-- 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~~-------~~~~---~~-- 77 (241)
.++|.||+|||||||++.++|.+++..|. .+.|+++..-+.... ..+. ..
T Consensus 368 ~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~ 447 (576)
T TIGR02204 368 TVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVE 447 (576)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHH
Confidence 79999999999999999999999887543 122332211110000 0000 00
Q ss_pred -----------c-----cch----hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH------HHHhCCcE
Q 026207 78 -----------I-----GTA----RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR------SIAERGVM 131 (241)
Q Consensus 78 -----------~-----~~~----~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~------~~~~~g~~ 131 (241)
+ |.. ..-...|+|++|+..+++++..+|+++++|||++.+|..... .....+++
T Consensus 448 ~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t 527 (576)
T TIGR02204 448 AAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRT 527 (576)
T ss_pred HHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCE
Confidence 0 000 001124567899999999999999999999999999995433 11225789
Q ss_pred EEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 132 LIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 132 vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+|.++|..+ .+ .. +|+|+.
T Consensus 528 ~IiitH~~~--------~~-~~---~d~vi~ 546 (576)
T TIGR02204 528 TLIIAHRLA--------TV-LK---ADRIVV 546 (576)
T ss_pred EEEEecchH--------HH-Hh---CCEEEE
Confidence 999999885 22 23 688776
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.7e-11 Score=103.77 Aligned_cols=63 Identities=16% Similarity=0.149 Sum_probs=46.3
Q ss_pred CCCcccHHHHHHHHHh----cCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccc
Q 026207 87 PEPSLQHKVMIEAVEN----HMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIG 155 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~----~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~ 155 (241)
+|++++++..+++++. .+|+++++|||++++|+.... ... .+.++++++|... +..+
T Consensus 159 lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~-~~~~ii~~~h~~~---------~~~~-- 226 (243)
T cd03272 159 LSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELS-DGAQFITTTFRPE---------LLEV-- 226 (243)
T ss_pred cCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecCHH---------HHhh--
Confidence 4557789999999885 358999999999999995433 222 3778888888753 3345
Q ss_pred cccEEEe
Q 026207 156 GVDTVTL 162 (241)
Q Consensus 156 ~~d~V~~ 162 (241)
||+++.
T Consensus 227 -~d~i~~ 232 (243)
T cd03272 227 -ADKFYG 232 (243)
T ss_pred -CCEEEE
Confidence 777765
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.8e-12 Score=130.95 Aligned_cols=72 Identities=15% Similarity=0.145 Sum_probs=55.8
Q ss_pred CCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHH-hCCcEEEEeecCCChhhhhcCCccccccccc
Q 026207 86 VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGV 157 (241)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~-~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~ 157 (241)
-.|+|+++++.++.++..+|+++++|||++++|+.... ... ..|.++++++|... +.+.++ +
T Consensus 336 glSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~-------~~i~~l---f 405 (1470)
T PLN03140 336 GISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPA-------PETFDL---F 405 (1470)
T ss_pred CCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCC-------HHHHHH---h
Confidence 35678899999999999999999999999999995432 333 35889999999865 245566 8
Q ss_pred cEEEe-CChHH
Q 026207 158 DTVTL-GDEEA 167 (241)
Q Consensus 158 d~V~~-~~~~~ 167 (241)
|+|++ .++..
T Consensus 406 D~vilL~~G~i 416 (1470)
T PLN03140 406 DDIILLSEGQI 416 (1470)
T ss_pred heEEEeeCceE
Confidence 88887 44443
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=8.6e-12 Score=128.60 Aligned_cols=64 Identities=14% Similarity=0.197 Sum_probs=51.1
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHh-CCcEEEEeecCCChhhhhcCCcccccccccc
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVD 158 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~-~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d 158 (241)
+|+|++|+..+++++..+|+++++|||++.+|+.... .... .|.|+|+++|..+ .+ .. ||
T Consensus 580 LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls--------~i-~~---aD 647 (1466)
T PTZ00265 580 LSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLS--------TI-RY---AN 647 (1466)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHH--------HH-Hh---CC
Confidence 5667899999999999999999999999999994332 2322 4889999999886 33 24 78
Q ss_pred EEEe
Q 026207 159 TVTL 162 (241)
Q Consensus 159 ~V~~ 162 (241)
+|+.
T Consensus 648 ~Iiv 651 (1466)
T PTZ00265 648 TIFV 651 (1466)
T ss_pred EEEE
Confidence 8887
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.1e-12 Score=129.79 Aligned_cols=136 Identities=13% Similarity=0.195 Sum_probs=87.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCC--------C-CCCccc---------------------c
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGG--------D-GDIPHS---------------------A 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~--------~-~~~~~~---------------------~ 77 (241)
.++|+|++|||||||++.|.+.+.++.|. +.++ +.++.. . ..+|+. .
T Consensus 1264 kvaIVG~SGSGKSTL~~lL~rl~~p~~G~--I~Id-G~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdee 1340 (1495)
T PLN03232 1264 KVGVVGRTGAGKSSMLNALFRIVELEKGR--IMID-DCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDAD 1340 (1495)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCce--EEEC-CEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHHH
Confidence 79999999999999999999999888554 3443 211100 0 000110 0
Q ss_pred ccch----------h--------hc----CCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH---H---HHhCC
Q 026207 78 IGTA----------R--------RM----QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR---S---IAERG 129 (241)
Q Consensus 78 ~~~~----------~--------~~----~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~---~---~~~~g 129 (241)
+-.+ . .+ ..+|+|++|+..+++++..+|+++++||+++.+|.+.-. + ....+
T Consensus 1341 i~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~ 1420 (1495)
T PLN03232 1341 LWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKS 1420 (1495)
T ss_pred HHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCC
Confidence 0000 0 00 124557899999999999999999999999999985432 1 12357
Q ss_pred cEEEEeecCCChhhhhcCCccccccccccEEEe-CChHHHHHHHHHhhhc
Q 026207 130 VMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL-GDEEARARRCQKSILE 178 (241)
Q Consensus 130 ~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~-~~~~~~~~~~~~~~k~ 178 (241)
+|+|+++|..+ .+.+ +|+|+. .++.....+..+++.+
T Consensus 1421 ~TvI~IAHRl~--------ti~~----~DrIlVL~~G~ivE~Gt~~eLl~ 1458 (1495)
T PLN03232 1421 CTMLVIAHRLN--------TIID----CDKILVLSSGQVLEYDSPQELLS 1458 (1495)
T ss_pred CEEEEEeCCHH--------HHHh----CCEEEEEECCEEEEECCHHHHHh
Confidence 99999999886 3333 688887 4443322244444443
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1e-11 Score=122.81 Aligned_cols=137 Identities=18% Similarity=0.243 Sum_probs=92.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC---------CCCccc----------c--cc-------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD---------GDIPHS----------A--IG------- 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~---------~~~~~~----------~--~~------- 79 (241)
.++|.||+||||||.+..|-+.+.|..|. +.+| +.++..- ..+.+. + .|
T Consensus 1018 TvALVG~SGsGKSTvI~LLeRfYdp~~G~--V~ID-g~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~ 1094 (1228)
T KOG0055|consen 1018 TVALVGPSGSGKSTVISLLERFYDPDAGK--VKID-GVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEE 1094 (1228)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCCCe--EEEC-CcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHH
Confidence 59999999999999999999999888655 6666 4433211 000000 0 00
Q ss_pred ---------------------chh----hcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH------HHHhC
Q 026207 80 ---------------------TAR----RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR------SIAER 128 (241)
Q Consensus 80 ---------------------~~~----~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~------~~~~~ 128 (241)
+-. +-..+|+|++||.++++|+..+|++|+|||.++.+|.+.-+ .....
T Consensus 1095 eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~ 1174 (1228)
T KOG0055|consen 1095 EIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAME 1174 (1228)
T ss_pred HHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhc
Confidence 000 11235677899999999999999999999999999984322 33345
Q ss_pred CcEEEEeecCCChhhhhcCCccccccccccEEEe-CChHHHHHHHHHhhhcc
Q 026207 129 GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL-GDEEARARRCQKSILER 179 (241)
Q Consensus 129 g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~-~~~~~~~~~~~~~~k~r 179 (241)
|.|.|...|..+ .+.+ ||.|.+ .++....+++-+++.++
T Consensus 1175 gRT~IvIAHRLS--------TIqn----aD~I~Vi~~G~VvE~GtH~~L~~~ 1214 (1228)
T KOG0055|consen 1175 GRTTIVIAHRLS--------TIQN----ADVIAVLKNGKVVEQGTHDELLAK 1214 (1228)
T ss_pred CCcEEEEecchh--------hhhc----CCEEEEEECCEEEecccHHHHHhC
Confidence 888888889887 4443 688887 44433333555555553
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=9.8e-12 Score=129.27 Aligned_cols=120 Identities=15% Similarity=0.231 Sum_probs=81.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCC--------C-CCCccc---------------------c
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGG--------D-GDIPHS---------------------A 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~--------~-~~~~~~---------------------~ 77 (241)
.++|+|++|||||||++.|.+.+.+..|. +.++ +.++.. . ..+|+. .
T Consensus 1267 kVaIVGrSGSGKSTLl~lL~rl~~p~~G~--I~ID-G~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdee 1343 (1622)
T PLN03130 1267 KVGIVGRTGAGKSSMLNALFRIVELERGR--ILID-GCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDAD 1343 (1622)
T ss_pred EEEEECCCCCCHHHHHHHHhCcCCCCCce--EEEC-CEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCCCHHH
Confidence 69999999999999999999999888554 4444 222110 0 011110 0
Q ss_pred c------------------cchhhc----CCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH---H---HHhCC
Q 026207 78 I------------------GTARRM----QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR---S---IAERG 129 (241)
Q Consensus 78 ~------------------~~~~~~----~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~---~---~~~~g 129 (241)
+ |.-..+ ..+|+|++|+..+++++..+|+++|+||+++.+|.+.-. + ....+
T Consensus 1344 i~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~ 1423 (1622)
T PLN03130 1344 LWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS 1423 (1622)
T ss_pred HHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCC
Confidence 0 000001 124557899999999999999999999999999984322 1 12357
Q ss_pred cEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 130 VMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 130 ~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+|+|+.+|..+ .+.+ ||+|+.
T Consensus 1424 ~TvI~IAHRL~--------tI~~----~DrIlV 1444 (1622)
T PLN03130 1424 CTMLIIAHRLN--------TIID----CDRILV 1444 (1622)
T ss_pred CEEEEEeCChH--------HHHh----CCEEEE
Confidence 99999999886 3333 577776
|
|
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.9e-11 Score=98.78 Aligned_cols=131 Identities=12% Similarity=0.062 Sum_probs=74.1
Q ss_pred EEEEEeEEeeC--cceeeccEEEEEeCCCchHHHHHHHHH----HhccccCCC---------------eEEEE-cCC--c
Q 026207 10 LIVKFFYALYS--INKIIFDFFLSYFRPGVGKTTVMREIA----RVLSDEFQK---------------RVVIV-DTS--N 65 (241)
Q Consensus 10 ~~~r~~~~~~~--~~~~~~g~vll~Gp~GsGKTTLl~~l~----~~l~~~~g~---------------~v~~i-~~~--~ 65 (241)
+.++.++..+. ......|+++|.||||+|||||+.++. +...+..+. .|.+. ++. .
T Consensus 4 l~l~nfr~~~~~~~l~~~~g~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~ 83 (204)
T cd03240 4 LSIRNIRSFHERSEIEFFSPLTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGK 83 (204)
T ss_pred EEEECcccccCceEEecCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCC
Confidence 34455544222 234456799999999999999999995 555443210 11111 111 0
Q ss_pred ccC--------CC-CCCccccccc--hhhcCCCCCcccHH------HHHHHHHhcCCcEEEEcCCCCHHhHHHHH-----
Q 026207 66 EIG--------GD-GDIPHSAIGT--ARRMQVPEPSLQHK------VMIEAVENHMPEVIIVDEIGTEAEAHACR----- 123 (241)
Q Consensus 66 e~~--------~~-~~~~~~~~~~--~~~~~~~~~~~~~~------~~~~~~l~~~p~vlilDE~~~~~d~~~~~----- 123 (241)
.+. .. ...+...... ......+|.+++++ ..++.++..+|+++++|||++.+|+....
T Consensus 84 ~~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~ 163 (204)
T cd03240 84 KYTITRSLAILENVIFCHQGESNWPLLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAE 163 (204)
T ss_pred EEEEEEEhhHhhceeeechHHHHHHHhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHH
Confidence 000 00 0000000000 01223456677775 46677888999999999999999984333
Q ss_pred ---HHHhC-CcEEEEeecCCC
Q 026207 124 ---SIAER-GVMLIGTAHGEW 140 (241)
Q Consensus 124 ---~~~~~-g~~vi~t~H~~~ 140 (241)
...+. |.++|+++|...
T Consensus 164 ~l~~~~~~~~~~iiiitH~~~ 184 (204)
T cd03240 164 IIEERKSQKNFQLIVITHDEE 184 (204)
T ss_pred HHHHHHhccCCEEEEEEecHH
Confidence 22233 788999999764
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=99.26 E-value=9.8e-12 Score=127.86 Aligned_cols=66 Identities=11% Similarity=-0.022 Sum_probs=52.9
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHH-hCCcEEEEeecCCChhhhhcCCcccccccccc
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVD 158 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~-~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d 158 (241)
.|+|+++|+.++.++..+|+++++|||++++|+.... ... ..|.++++++|... . .+.++ +|
T Consensus 210 LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~-~------~i~~l---~D 279 (1394)
T TIGR00956 210 VSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCS-Q------DAYEL---FD 279 (1394)
T ss_pred CCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCC-H------HHHHh---hc
Confidence 6778999999999999999999999999999995432 333 35899999999864 1 44555 78
Q ss_pred EEEe
Q 026207 159 TVTL 162 (241)
Q Consensus 159 ~V~~ 162 (241)
+|++
T Consensus 280 ~v~~ 283 (1394)
T TIGR00956 280 KVIV 283 (1394)
T ss_pred eEEE
Confidence 7777
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.26 E-value=6e-12 Score=114.15 Aligned_cols=57 Identities=9% Similarity=0.117 Sum_probs=48.9
Q ss_pred cCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHHH----HHhCCcEEEEeecCCC
Q 026207 84 MQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRS----IAERGVMLIGTAHGEW 140 (241)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~~----~~~~g~~vi~t~H~~~ 140 (241)
+..+|+|.+++..+++|+..+||+++||||++.+|..++.. .....+|+|+++|..+
T Consensus 196 t~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~~T~liVSHDr~ 256 (582)
T KOG0062|consen 196 TKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWKITSLIVSHDRN 256 (582)
T ss_pred ccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhCCceEEEEeccHH
Confidence 34578899999999999999999999999999999976653 3445688999999987
|
|
| >COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.6e-11 Score=93.72 Aligned_cols=114 Identities=26% Similarity=0.314 Sum_probs=65.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeE-------------------EEEcCCcccCCCCCCccccccchhhcCCCC
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRV-------------------VIVDTSNEIGGDGDIPHSAIGTARRMQVPE 88 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v-------------------~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~ 88 (241)
-+.|+|+||+||||++..++..+... |.+| +.++++.+-... ....+. .+++-+.
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e~L~~~-g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la----~~~~~~-~rvGkY~ 80 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAEKLREK-GYKVGGFITPEVREGGKRIGFKIVDLATGEEGILA----RVGFSR-PRVGKYG 80 (179)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHhc-CceeeeEEeeeeecCCeEeeeEEEEccCCceEEEE----EcCCCC-cccceEE
Confidence 37899999999999999999888755 2333 333322221100 000000 0111110
Q ss_pred Ccc-cHH-H---HHHHHHhcCCcEEEEcCCCCHHhH-----HHHHHHHhCCcEEEEeecCCChhhhhcCCccccc
Q 026207 89 PSL-QHK-V---MIEAVENHMPEVIIVDEIGTEAEA-----HACRSIAERGVMLIGTAHGEWLENIIKNPILSDL 153 (241)
Q Consensus 89 ~~~-~~~-~---~~~~~l~~~p~vlilDE~~~~~d~-----~~~~~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l 153 (241)
-.. ..+ . +++.|+ ..+|++|+||++.++-. +++.+..+++..+|+|.|-.+. +|.+..+
T Consensus 81 V~v~~le~i~~~al~rA~-~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kpliatlHrrsr-----~P~v~~i 149 (179)
T COG1618 81 VNVEGLEEIAIPALRRAL-EEADVIIIDEIGPMELKSKKFREAVEEVLKSGKPLIATLHRRSR-----HPLVQRI 149 (179)
T ss_pred eeHHHHHHHhHHHHHHHh-hcCCEEEEecccchhhccHHHHHHHHHHhcCCCcEEEEEecccC-----ChHHHHh
Confidence 000 111 2 223333 34899999999988644 3455677789999999999872 4545444
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.9e-11 Score=95.26 Aligned_cols=54 Identities=20% Similarity=0.209 Sum_probs=45.7
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH--------HHHhCCcEEEEeecCCC
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR--------SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~--------~~~~~g~~vi~t~H~~~ 140 (241)
+|++.+|++++++++.-.|+++|-|||+..+|...-. ...+.|.|++.++|...
T Consensus 147 LSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~ 208 (228)
T COG4181 147 LSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ 208 (228)
T ss_pred cCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH
Confidence 5678899999999999999999999999999884332 33467999999999875
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.9e-11 Score=124.52 Aligned_cols=55 Identities=18% Similarity=0.219 Sum_probs=47.2
Q ss_pred CCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCC
Q 026207 86 VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~ 140 (241)
.+|+|++++..++.++..+|+++++|||++++|+.... ..++.|.++|.|+|..+
T Consensus 1019 ~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~ 1080 (1470)
T PLN03140 1019 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1080 (1470)
T ss_pred CcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 35668899999999999999999999999999995432 44567999999999986
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.9e-11 Score=126.88 Aligned_cols=136 Identities=15% Similarity=0.163 Sum_probs=87.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCC--------C-CCCccc---------------------c
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGG--------D-GDIPHS---------------------A 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~--------~-~~~~~~---------------------~ 77 (241)
.++|+|++|||||||++.|.+.+.+..|. +.++ +.++.. . ..+|+. .
T Consensus 1314 kiaIVGrTGsGKSTL~~lL~rl~~~~~G~--I~Id-G~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdee 1390 (1522)
T TIGR00957 1314 KVGIVGRTGAGKSSLTLGLFRINESAEGE--IIID-GLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEE 1390 (1522)
T ss_pred EEEEECCCCCCHHHHHHHHhcCccCCCCe--EEEC-CEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHH
Confidence 69999999999999999999999887554 4443 211110 0 000110 0
Q ss_pred c------------------cchhhc----CCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH---HH---HhCC
Q 026207 78 I------------------GTARRM----QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR---SI---AERG 129 (241)
Q Consensus 78 ~------------------~~~~~~----~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~---~~---~~~g 129 (241)
+ |.-..+ ..+|+|++|+..+++++..+|+++++||+++.+|.+.-. ++ ...+
T Consensus 1391 i~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~ 1470 (1522)
T TIGR00957 1391 VWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFED 1470 (1522)
T ss_pred HHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCC
Confidence 0 000011 124557899999999999999999999999999985322 21 2357
Q ss_pred cEEEEeecCCChhhhhcCCccccccccccEEEe-CChHHHHHHHHHhhhc
Q 026207 130 VMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL-GDEEARARRCQKSILE 178 (241)
Q Consensus 130 ~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~-~~~~~~~~~~~~~~k~ 178 (241)
+|+|+.+|..+ .+.+ +|+|+. .++.....+...++.+
T Consensus 1471 ~TvI~IAHRl~--------ti~~----~DrIlVld~G~IvE~G~~~eLl~ 1508 (1522)
T TIGR00957 1471 CTVLTIAHRLN--------TIMD----YTRVIVLDKGEVAEFGAPSNLLQ 1508 (1522)
T ss_pred CEEEEEecCHH--------HHHh----CCEEEEEECCEEEEECCHHHHHh
Confidence 89999999886 3333 688887 4443322244444443
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.2e-10 Score=96.98 Aligned_cols=65 Identities=11% Similarity=0.056 Sum_probs=45.3
Q ss_pred CCCCCcccHHHHHHHHHhc----CCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccc
Q 026207 85 QVPEPSLQHKVMIEAVENH----MPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDL 153 (241)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~----~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l 153 (241)
..++.+++++..++.++.. .|+++++|||++++|+.... ... .+.++++++|.. .+..+
T Consensus 126 ~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~-~~~~~iivs~~~---------~~~~~ 195 (212)
T cd03274 126 SNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERT-KNAQFIVISLRN---------NMFEL 195 (212)
T ss_pred hhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECcH---------HHHHh
Confidence 3456678899999988753 47999999999999984432 332 355666666764 34445
Q ss_pred cccccEEEe
Q 026207 154 IGGVDTVTL 162 (241)
Q Consensus 154 ~~~~d~V~~ 162 (241)
||+++.
T Consensus 196 ---~d~v~~ 201 (212)
T cd03274 196 ---ADRLVG 201 (212)
T ss_pred ---CCEEEE
Confidence 888776
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.7e-11 Score=92.44 Aligned_cols=131 Identities=22% Similarity=0.177 Sum_probs=75.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCC-----CCccccccchhhcCCCCC----cccHHHHHH
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDG-----DIPHSAIGTARRMQVPEP----SLQHKVMIE 98 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~-----~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 98 (241)
+++|+||||+||||++..++...... +.++++++......... .................. .........
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~-~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATK-GGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAER 79 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhc-CCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHH
Confidence 47899999999999999999988764 67888888332221000 000000000000000111 112233456
Q ss_pred HHHhcCCcEEEEcCCCCHHhHH-------------H----HHHHHhCCcEEEEeecCCChhhhhc----CC-cccccccc
Q 026207 99 AVENHMPEVIIVDEIGTEAEAH-------------A----CRSIAERGVMLIGTAHGEWLENIIK----NP-ILSDLIGG 156 (241)
Q Consensus 99 ~~l~~~p~vlilDE~~~~~d~~-------------~----~~~~~~~g~~vi~t~H~~~~~~~~~----~p-~l~~l~~~ 156 (241)
.+...+|+++++||++...+.. . ...+.+.+++++.++|..+...... .+ .++++
T Consensus 80 ~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~--- 156 (165)
T cd01120 80 LRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGDKGDPRLTRGAQNLEDI--- 156 (165)
T ss_pred HHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCccccCcccccCccceeee---
Confidence 6777899999999999653321 1 1134456899999999887333321 11 35555
Q ss_pred ccEEEe
Q 026207 157 VDTVTL 162 (241)
Q Consensus 157 ~d~V~~ 162 (241)
+|.+++
T Consensus 157 ~d~~~~ 162 (165)
T cd01120 157 ADTVIV 162 (165)
T ss_pred cceEEE
Confidence 777664
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.3e-11 Score=125.10 Aligned_cols=113 Identities=12% Similarity=0.112 Sum_probs=77.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC-----eEEEEcCCcccCCCC----------CCccc------------cccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK-----RVVIVDTSNEIGGDG----------DIPHS------------AIGT 80 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-----~v~~i~~~~e~~~~~----------~~~~~------------~~~~ 80 (241)
.++|+||+|||||||++.++|.+++..|. ++.|+.+..-+.... ..... .+..
T Consensus 666 ~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~ 745 (1522)
T TIGR00957 666 LVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEI 745 (1522)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCCccccCCcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHh
Confidence 79999999999999999999999887543 455665432221100 00000 0000
Q ss_pred h---------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHHH----H-----HhCCcEEEEeecCCC
Q 026207 81 A---------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRS----I-----AERGVMLIGTAHGEW 140 (241)
Q Consensus 81 ~---------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~~----~-----~~~g~~vi~t~H~~~ 140 (241)
. .+-..+|+|++|+..+++++..+|+++++|||++.+|+..... . ...|.++|.++|...
T Consensus 746 ~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~ 823 (1522)
T TIGR00957 746 LPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGIS 823 (1522)
T ss_pred cCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChh
Confidence 0 0112356788999999999999999999999999999954431 1 134789999999875
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.22 E-value=4e-11 Score=96.23 Aligned_cols=121 Identities=17% Similarity=0.250 Sum_probs=80.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc---------------------CCcccCCCCCCccccccch-----
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD---------------------TSNEIGGDGDIPHSAIGTA----- 81 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~---------------------~~~e~~~~~~~~~~~~~~~----- 81 (241)
-+.++|.||||||||.++++|.++|..|+ +.++ +++... .|...+|..
T Consensus 41 TlaiIG~NGSGKSTLakMlaGmi~PTsG~--il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~----NPRl~iGqiLd~PL 114 (267)
T COG4167 41 TLAIIGENGSGKSTLAKMLAGMIEPTSGE--ILINDHPLHFGDYSFRSKRIRMIFQDPNTSL----NPRLRIGQILDFPL 114 (267)
T ss_pred EEEEEccCCCcHhHHHHHHhcccCCCCce--EEECCccccccchHhhhhheeeeecCCcccc----ChhhhhhhHhcchh
Confidence 58999999999999999999999999554 2222 121111 111111110
Q ss_pred -------------------hhc-----------CCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH--------
Q 026207 82 -------------------RRM-----------QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------- 123 (241)
Q Consensus 82 -------------------~~~-----------~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------- 123 (241)
.++ ...+.+.+|++++++++..+|++||.||.-+.+|.....
T Consensus 115 ~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~Le 194 (267)
T COG4167 115 RLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLE 194 (267)
T ss_pred hhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHH
Confidence 111 123345699999999999999999999999999884322
Q ss_pred HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe-CCh
Q 026207 124 SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL-GDE 165 (241)
Q Consensus 124 ~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~-~~~ 165 (241)
.-.+.|+..|.+..-.. .+.|+ +|.|+. .++
T Consensus 195 LQek~GiSyiYV~QhlG--------~iKHi---~D~viVM~EG 226 (267)
T COG4167 195 LQEKQGISYIYVTQHIG--------MIKHI---SDQVLVMHEG 226 (267)
T ss_pred HHHHhCceEEEEechhh--------Hhhhh---cccEEEEecC
Confidence 12345888555443333 67888 888887 443
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.2e-11 Score=126.47 Aligned_cols=135 Identities=17% Similarity=0.199 Sum_probs=86.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCC--------C-CCCccc----------cc----------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGG--------D-GDIPHS----------AI---------- 78 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~--------~-~~~~~~----------~~---------- 78 (241)
.++|+|++|||||||++.|++.+.+..|. +.++ +.++.. . ..+|+. ++
T Consensus 1338 kVaIVGrTGSGKSTLl~lLlrl~~p~~G~--I~ID-G~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdee 1414 (1560)
T PTZ00243 1338 KVGIVGRTGSGKSTLLLTFMRMVEVCGGE--IRVN-GREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAE 1414 (1560)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcE--EEEC-CEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCCHHH
Confidence 69999999999999999999999887554 3443 222110 0 011110 00
Q ss_pred -------------------cchhhc----CCCCCcccHHHHHHHHHhcC-CcEEEEcCCCCHHhHHHHH------HHHhC
Q 026207 79 -------------------GTARRM----QVPEPSLQHKVMIEAVENHM-PEVIIVDEIGTEAEAHACR------SIAER 128 (241)
Q Consensus 79 -------------------~~~~~~----~~~~~~~~~~~~~~~~l~~~-p~vlilDE~~~~~d~~~~~------~~~~~ 128 (241)
|.-..+ ..+|+|++|+..+++++..+ |++|||||+++.+|.+.-. .....
T Consensus 1415 I~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~ 1494 (1560)
T PTZ00243 1415 VWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFS 1494 (1560)
T ss_pred HHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCC
Confidence 000001 12455779999999999985 8999999999999884332 11235
Q ss_pred CcEEEEeecCCChhhhhcCCccccccccccEEEe-CChHHHHHHHHHhhh
Q 026207 129 GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL-GDEEARARRCQKSIL 177 (241)
Q Consensus 129 g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~-~~~~~~~~~~~~~~k 177 (241)
++|+|+++|..+ .+.+ ||+|+. .++.....+..+++.
T Consensus 1495 ~~TvI~IAHRl~--------ti~~----~DrIlVLd~G~VvE~Gt~~eLl 1532 (1560)
T PTZ00243 1495 AYTVITIAHRLH--------TVAQ----YDKIIVMDHGAVAEMGSPRELV 1532 (1560)
T ss_pred CCEEEEEeccHH--------HHHh----CCEEEEEECCEEEEECCHHHHH
Confidence 789999999886 3333 699887 444332224444443
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.9e-11 Score=115.71 Aligned_cols=136 Identities=15% Similarity=0.221 Sum_probs=87.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC---------CCCcccc------------c--------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD---------GDIPHSA------------I-------- 78 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~---------~~~~~~~------------~-------- 78 (241)
.++|.||+||||||+++.+++.+.+..|. +.++ +.++..- ..+++.. .
T Consensus 357 ~vaiVG~sGsGKSTl~~LL~r~~~~~~G~--I~id-g~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~e 433 (567)
T COG1132 357 KVAIVGPSGSGKSTLIKLLLRLYDPTSGE--ILID-GIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDE 433 (567)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCCCe--EEEC-CEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHH
Confidence 79999999999999999999999987554 3333 3322110 1111100 0
Q ss_pred --------------------cchhhcC----CCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH---HH---HhC
Q 026207 79 --------------------GTARRMQ----VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR---SI---AER 128 (241)
Q Consensus 79 --------------------~~~~~~~----~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~---~~---~~~ 128 (241)
|.-..++ .+|+|++|+..+++++..+|+++++||+++.+|.+.-. ++ ...
T Consensus 434 ei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~ 513 (567)
T COG1132 434 EIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLK 513 (567)
T ss_pred HHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhc
Confidence 0000111 24557799999999999999999999999999995422 21 235
Q ss_pred CcEEEEeecCCChhhhhcCCccccccccccEEEe-CChHHHHHHHHHhhhc
Q 026207 129 GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL-GDEEARARRCQKSILE 178 (241)
Q Consensus 129 g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~-~~~~~~~~~~~~~~k~ 178 (241)
+.|+++.+|..+ .+.+ +|+|+. .++.....+...++.+
T Consensus 514 ~rT~iiIaHRls--------ti~~----aD~IiVl~~G~i~e~G~h~eLl~ 552 (567)
T COG1132 514 GRTTLIIAHRLS--------TIKN----ADRIIVLDNGRIVERGTHEELLA 552 (567)
T ss_pred CCEEEEEeccHh--------HHHh----CCEEEEEECCEEEEecCHHHHHH
Confidence 668777889886 3333 688887 4443222244444443
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.4e-12 Score=96.89 Aligned_cols=87 Identities=16% Similarity=0.359 Sum_probs=58.4
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCC--------C-CCCccc--------------------
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGG--------D-GDIPHS-------------------- 76 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~--------~-~~~~~~-------------------- 76 (241)
..+++|+||||||||||++.+++...+..|. ++++ +..+.. . ..+++.
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~--i~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~~~~~~~~ 87 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGLLPPDSGS--ILIN-GKDISDIDIEELRRRIGYVPQDPQLFPGLTVRENESDERIEE 87 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTSSHESEEE--EEET-TEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHHHHHHHHH
T ss_pred CCEEEEEccCCCccccceeeecccccccccc--cccc-cccccccccccccccccccccccccccccccccccccccccc
Confidence 3489999999999999999999999876332 4443 211110 0 000000
Q ss_pred ---ccc----chhhc----CCCCCcccHHHHHHHHHhcCCcEEEEcCCCC
Q 026207 77 ---AIG----TARRM----QVPEPSLQHKVMIEAVENHMPEVIIVDEIGT 115 (241)
Q Consensus 77 ---~~~----~~~~~----~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~ 115 (241)
.++ ....+ ..+|.+++++..+++++..+|+++++|||++
T Consensus 88 ~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 88 VLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred cccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 000 00122 4567788999999999999999999999985
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.4e-11 Score=96.03 Aligned_cols=114 Identities=14% Similarity=0.131 Sum_probs=69.6
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCC-----eEEEEcCCcccCCCC-CC------ccccccchhhcCCCCCcccHH
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQK-----RVVIVDTSNEIGGDG-DI------PHSAIGTARRMQVPEPSLQHK 94 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-----~v~~i~~~~e~~~~~-~~------~~~~~~~~~~~~~~~~~~~~~ 94 (241)
++.+|+||||+|||+++.++.-.+...... .+....+........ .+ ....+..-...++++.+++++
T Consensus 23 ~~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~LS~Ge~~r 102 (178)
T cd03239 23 SFNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAGINSASVEITFDKSYFLVLQGKVEQILSGGEKSL 102 (178)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccccCCCCceEEEEEEEECceEEecCCcCcccCCHHHHHH
Confidence 399999999999999999988766432100 000000000000000 00 000000011234477788999
Q ss_pred HHHHHHHh----cCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCC
Q 026207 95 VMIEAVEN----HMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 95 ~~~~~~l~----~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~ 140 (241)
..++.++. .+|+++++|||.+.+|+.... .....|.++|+++|...
T Consensus 103 ~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~ 159 (178)
T cd03239 103 SALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKE 159 (178)
T ss_pred HHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 99988875 589999999999999984332 33445789999999864
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.5e-11 Score=123.37 Aligned_cols=64 Identities=14% Similarity=0.259 Sum_probs=50.5
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHH-hCCcEEEEeecCCChhhhhcCCcccccccccc
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVD 158 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~-~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d 158 (241)
+|+|++||..+++++..+|++|+|||+++.+|.+... ... ..+.|+|+++|..+ .+++ ||
T Consensus 1359 LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRls--------ti~~----aD 1426 (1466)
T PTZ00265 1359 LSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIA--------SIKR----SD 1426 (1466)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHH--------HHHh----CC
Confidence 5667899999999999999999999999999994332 222 24889999999886 3332 68
Q ss_pred EEEe
Q 026207 159 TVTL 162 (241)
Q Consensus 159 ~V~~ 162 (241)
+|+.
T Consensus 1427 ~Ivv 1430 (1466)
T PTZ00265 1427 KIVV 1430 (1466)
T ss_pred EEEE
Confidence 8887
|
|
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.5e-10 Score=90.14 Aligned_cols=115 Identities=16% Similarity=0.182 Sum_probs=74.5
Q ss_pred eccEEEEEeCCCchHHHHHHHHHHhccccC---C----------------CeEEEEcCCcccCCC--------CCCcccc
Q 026207 25 IFDFFLSYFRPGVGKTTVMREIARVLSDEF---Q----------------KRVVIVDTSNEIGGD--------GDIPHSA 77 (241)
Q Consensus 25 ~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~---g----------------~~v~~i~~~~e~~~~--------~~~~~~~ 77 (241)
...++-+.||+|||||||+.-+.+.+.++. | +.+..+.+..-+... ...|...
T Consensus 27 ~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fAlp~~~ 106 (213)
T COG4136 27 KGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFALPATL 106 (213)
T ss_pred CCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeecccccccccccccceEEecCccc
Confidence 344899999999999999999999998661 1 011111100000000 0001111
Q ss_pred ccchhh-------------------cCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHH--------HHHHhCCc
Q 026207 78 IGTARR-------------------MQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC--------RSIAERGV 130 (241)
Q Consensus 78 ~~~~~~-------------------~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~--------~~~~~~g~ 130 (241)
.|++++ -...|++.+.++.+.+++...|+.+++|||.+.+|.... .++...|+
T Consensus 107 KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agi 186 (213)
T COG4136 107 KGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGI 186 (213)
T ss_pred ccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCC
Confidence 122111 123566789999999999999999999999999998432 24556799
Q ss_pred EEEEeecCC
Q 026207 131 MLIGTAHGE 139 (241)
Q Consensus 131 ~vi~t~H~~ 139 (241)
..+.++|..
T Consensus 187 Ptv~VTHD~ 195 (213)
T COG4136 187 PTVQVTHDL 195 (213)
T ss_pred CeEEEeccc
Confidence 999999976
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.7e-11 Score=124.56 Aligned_cols=113 Identities=14% Similarity=0.079 Sum_probs=77.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCC------CeEEEEcCCcccCCCC----------CCccc------------cc-
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQ------KRVVIVDTSNEIGGDG----------DIPHS------------AI- 78 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g------~~v~~i~~~~e~~~~~----------~~~~~------------~~- 78 (241)
.++|+||+|||||||++.|++.+++..| ..+.|+++..-+.... ..... .+
T Consensus 645 ~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~ 724 (1495)
T PLN03232 645 LVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLD 724 (1495)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHHhCCHHHHH
Confidence 8999999999999999999999988754 2466766443222110 00000 00
Q ss_pred ----cchhhc----CCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH----HH---HhCCcEEEEeecCCC
Q 026207 79 ----GTARRM----QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR----SI---AERGVMLIGTAHGEW 140 (241)
Q Consensus 79 ----~~~~~~----~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~----~~---~~~g~~vi~t~H~~~ 140 (241)
|....+ ..+|+|++||..+++++..+|+++++|||++.+|++... .+ ...+.|+|.++|..+
T Consensus 725 ~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~ 801 (1495)
T PLN03232 725 LLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLH 801 (1495)
T ss_pred hCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChh
Confidence 000011 125668899999999999999999999999999985433 21 225789999899875
|
|
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.1e-10 Score=93.53 Aligned_cols=118 Identities=8% Similarity=-0.031 Sum_probs=69.9
Q ss_pred eeeccEEEEEeCCCchHHHHHHHHHHhccccC---------------CC--eEE--EEcCCcccCCCC-CCccccc----
Q 026207 23 KIIFDFFLSYFRPGVGKTTVMREIARVLSDEF---------------QK--RVV--IVDTSNEIGGDG-DIPHSAI---- 78 (241)
Q Consensus 23 ~~~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~---------------g~--~v~--~i~~~~e~~~~~-~~~~~~~---- 78 (241)
....++.+|+||||+||||++.++...+.... +. ..+ .++......... ...+...
T Consensus 18 ~f~~gl~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l 97 (198)
T cd03276 18 EFGPRVNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDANPLCVLSQDMARSFL 97 (198)
T ss_pred ecCCCeEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccCCcCCHHHHHHHHHHh
Confidence 44556889999999999999999886443220 10 011 111111000000 0000000
Q ss_pred --c--chhhcCCCCCcccHHHHHHHHH----hcCCcEEEEcCCCCHHhHHHH-------HHHHh---CCcEEEEeecCCC
Q 026207 79 --G--TARRMQVPEPSLQHKVMIEAVE----NHMPEVIIVDEIGTEAEAHAC-------RSIAE---RGVMLIGTAHGEW 140 (241)
Q Consensus 79 --~--~~~~~~~~~~~~~~~~~~~~~l----~~~p~vlilDE~~~~~d~~~~-------~~~~~---~g~~vi~t~H~~~ 140 (241)
. .......++.+++++..++.++ ..+|+++++|||++++|.... ....+ .+.++++++|..+
T Consensus 98 ~~~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~ 177 (198)
T cd03276 98 TSNKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDIS 177 (198)
T ss_pred ccccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCccc
Confidence 0 0112344566789999998888 589999999999999999432 23222 2357888889886
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.8e-11 Score=124.19 Aligned_cols=113 Identities=17% Similarity=0.130 Sum_probs=78.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccC-C-----CeEEEEcCCcccCCCCC-------Cc--cc-------------cc-
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEF-Q-----KRVVIVDTSNEIGGDGD-------IP--HS-------------AI- 78 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~-g-----~~v~~i~~~~e~~~~~~-------~~--~~-------------~~- 78 (241)
.++|+||+|||||||++.|++.+++.. | .++.|+++..-+..... .+ .. .+
T Consensus 645 ~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~ 724 (1622)
T PLN03130 645 LVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLD 724 (1622)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHH
Confidence 799999999999999999999998875 3 24667664432221100 00 00 00
Q ss_pred ----cchhhc----CCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH----HH---HhCCcEEEEeecCCC
Q 026207 79 ----GTARRM----QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR----SI---AERGVMLIGTAHGEW 140 (241)
Q Consensus 79 ----~~~~~~----~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~----~~---~~~g~~vi~t~H~~~ 140 (241)
|....+ ..+|+|++||..+++++..+|+++++|||++.+|++... .+ ...|+|+|.++|..+
T Consensus 725 ~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~ 801 (1622)
T PLN03130 725 LLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLH 801 (1622)
T ss_pred hCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHh
Confidence 000011 125678899999999999999999999999999985432 22 225789999999875
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.19 E-value=1e-10 Score=98.33 Aligned_cols=64 Identities=11% Similarity=0.082 Sum_probs=50.6
Q ss_pred CCCcccHHHHHHHHHhcCC--cEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccc
Q 026207 87 PEPSLQHKVMIEAVENHMP--EVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGV 157 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p--~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~ 157 (241)
+|++++++..+++++..+| +++|+|||++++|+.... ...+.|.++|+++|..+ .+ .. |
T Consensus 138 LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~--------~~-~~---~ 205 (226)
T cd03270 138 LSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDED--------TI-RA---A 205 (226)
T ss_pred CCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHH--------HH-Hh---C
Confidence 4567899999999999998 599999999999984332 34456899999999986 33 24 7
Q ss_pred cEEEe
Q 026207 158 DTVTL 162 (241)
Q Consensus 158 d~V~~ 162 (241)
|+++.
T Consensus 206 d~i~~ 210 (226)
T cd03270 206 DHVID 210 (226)
T ss_pred CEEEE
Confidence 88876
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=99.19 E-value=1e-10 Score=93.37 Aligned_cols=114 Identities=11% Similarity=0.013 Sum_probs=69.9
Q ss_pred eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHH
Q 026207 23 KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVE 101 (241)
Q Consensus 23 ~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 101 (241)
....+ +++|+||||+||||+++++.-.+....+ ++.. ..+.......+.............+.+++++..++.++
T Consensus 17 ~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~-~~~~---~~~~~~g~~~~~~~~~~i~~~~~lS~G~~~~~~la~~L 92 (162)
T cd03227 17 TFGEGSLTIITGPNGSGKSTILDAIGLALGGAQS-ATRR---RSGVKAGCIVAAVSAELIFTRLQLSGGEKELSALALIL 92 (162)
T ss_pred ecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcch-hhhc---cCcccCCCcceeeEEEEehheeeccccHHHHHHHHHHH
Confidence 33344 9999999999999999998776654421 1111 11100000011111000001122566788888888888
Q ss_pred hc----CCcEEEEcCCCCHHhHHHH-------HHHHhCCcEEEEeecCCC
Q 026207 102 NH----MPEVIIVDEIGTEAEAHAC-------RSIAERGVMLIGTAHGEW 140 (241)
Q Consensus 102 ~~----~p~vlilDE~~~~~d~~~~-------~~~~~~g~~vi~t~H~~~ 140 (241)
.. +|+++++|||.++.|+... .+....|.++++++|...
T Consensus 93 ~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~ 142 (162)
T cd03227 93 ALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPE 142 (162)
T ss_pred HhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 75 7899999999999988432 233334788999999886
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=99.18 E-value=8.8e-11 Score=99.00 Aligned_cols=176 Identities=14% Similarity=0.063 Sum_probs=90.0
Q ss_pred eEEeeCcceeeccEEEEEeCCCchHHHHH-HHHHHhccccCCCeEEEEcCCcccCCC--------CCCccc--cccchhh
Q 026207 15 FYALYSINKIIFDFFLSYFRPGVGKTTVM-REIARVLSDEFQKRVVIVDTSNEIGGD--------GDIPHS--AIGTARR 83 (241)
Q Consensus 15 ~~~~~~~~~~~~g~vll~Gp~GsGKTTLl-~~l~~~l~~~~g~~v~~i~~~~e~~~~--------~~~~~~--~~~~~~~ 83 (241)
+...++..-....+++|.|||||||||++ +.+++.+.+ |.+++|++ .++.... +..... ..+....
T Consensus 13 ld~~l~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~--g~~~~yi~-~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~ 89 (230)
T PRK08533 13 LHKRLGGGIPAGSLILIEGDESTGKSILSQRLAYGFLQN--GYSVSYVS-TQLTTTEFIKQMMSLGYDINKKLISGKLLY 89 (230)
T ss_pred eehhhCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEEe-CCCCHHHHHHHHHHhCCchHHHhhcCcEEE
Confidence 33444433333448999999999999996 455554443 47889988 4433211 000000 0000000
Q ss_pred cC---CCCCcccHHHH----HHHHHhcCCcEEEEcCCCCHH----hHHHH-------HHHHhCCcEEEEeecCCChhhhh
Q 026207 84 MQ---VPEPSLQHKVM----IEAVENHMPEVIIVDEIGTEA----EAHAC-------RSIAERGVMLIGTAHGEWLENII 145 (241)
Q Consensus 84 ~~---~~~~~~~~~~~----~~~~l~~~p~vlilDE~~~~~----d~~~~-------~~~~~~g~~vi~t~H~~~~~~~~ 145 (241)
.. ..+.....+.. +......+|+++++|||++.. |+... ....+.|.+++.|+|........
T Consensus 90 ~~~~~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi~t~~~~~~~~~~ 169 (230)
T PRK08533 90 IPVYPLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVIILTANPKELDESV 169 (230)
T ss_pred EEecccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEEEEeccccccccc
Confidence 00 01111112222 233334579999999999887 43211 12335577888777755322111
Q ss_pred cCCccccccccccEEEe---CChHHHHHHHHHhhhccCCCCCc--eEEEEEEc-CceE
Q 026207 146 KNPILSDLIGGVDTVTL---GDEEARARRCQKSILERKAPPTF--YFLIEMRE-RHYW 197 (241)
Q Consensus 146 ~~p~l~~l~~~~d~V~~---~~~~~~~~~~~~~~k~r~g~~~~--~~~fe~~~-~g~~ 197 (241)
. ..++++ ||.|+. -+.....+|.++.+|.|-..... ..-|++.+ .|+.
T Consensus 170 ~-~~~~~~---~DgvI~L~~~~~~~~~~R~i~V~KmR~~~~~~~~~~~f~i~~~~g~~ 223 (230)
T PRK08533 170 L-TILRTA---ATMLIRLEVKVFGGDLKNSAKIVKYNMAKGSFQKSIPFRVEPKIGLA 223 (230)
T ss_pred c-eeEEEe---eeEEEEEEEeecCCEEEEEEEEEEecCCccccCCEEEEEEcCCccEE
Confidence 1 145777 899986 22222223666667777423322 34566653 3653
|
|
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.5e-11 Score=98.16 Aligned_cols=120 Identities=13% Similarity=0.021 Sum_probs=62.1
Q ss_pred eeCcceeecc-EEEEEeCCCchHHHHHHHHHHhc-cccCCCeEEEEcCCcccCCC-CCCccccccc--hhhcCCCCCccc
Q 026207 18 LYSINKIIFD-FFLSYFRPGVGKTTVMREIARVL-SDEFQKRVVIVDTSNEIGGD-GDIPHSAIGT--ARRMQVPEPSLQ 92 (241)
Q Consensus 18 ~~~~~~~~~g-~vll~Gp~GsGKTTLl~~l~~~l-~~~~g~~v~~i~~~~e~~~~-~~~~~~~~~~--~~~~~~~~~~~~ 92 (241)
+.+......+ .++|+||||+||||+++++++.. ....|..+ .....++... ....+..... ...+...+.+++
T Consensus 20 ~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~--~~~~~~i~~~dqi~~~~~~~d~i~~~~s~~~~e~~ 97 (202)
T cd03243 20 VPNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFV--PAESASIPLVDRIFTRIGAEDSISDGRSTFMAELL 97 (202)
T ss_pred EeeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCc--cccccccCCcCEEEEEecCcccccCCceeHHHHHH
Confidence 3444445555 89999999999999999999432 12212111 0001111000 0000000000 000011111222
Q ss_pred HHHHHHHHHhcCCcEEEEcCCCCHHhHHHH--------HHHHhCCcEEEEeecCCC
Q 026207 93 HKVMIEAVENHMPEVIIVDEIGTEAEAHAC--------RSIAERGVMLIGTAHGEW 140 (241)
Q Consensus 93 ~~~~~~~~l~~~p~vlilDE~~~~~d~~~~--------~~~~~~g~~vi~t~H~~~ 140 (241)
+.........+|+++++|||+++.|+... ....+.+.++|+++|...
T Consensus 98 -~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~~ 152 (202)
T cd03243 98 -ELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFHE 152 (202)
T ss_pred -HHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHH
Confidence 22222333578999999999998888321 123445888999999765
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.7e-11 Score=123.66 Aligned_cols=113 Identities=12% Similarity=0.002 Sum_probs=78.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC-----eEEEEcCCcccCCCC--------C-Ccc----cccc----------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK-----RVVIVDTSNEIGGDG--------D-IPH----SAIG---------- 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-----~v~~i~~~~e~~~~~--------~-~~~----~~~~---------- 79 (241)
+++|+||+|||||||++.|+|.+++..|. ++.|+.+...+.... . ... ....
T Consensus 454 ~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l~~ 533 (1490)
T TIGR01271 454 LLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIAL 533 (1490)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEEEEeCCCccCCccHHHHHHhccccchHHHHHHHHHHhHHHHHHh
Confidence 89999999999999999999999887543 355665432221100 0 000 0000
Q ss_pred ----ch----hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHHH-------HHhCCcEEEEeecCCC
Q 026207 80 ----TA----RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRS-------IAERGVMLIGTAHGEW 140 (241)
Q Consensus 80 ----~~----~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~~-------~~~~g~~vi~t~H~~~ 140 (241)
.. .+-..+|+|++|+..+++++..+|+++++|||.+++|+..... ....|.++|.++|...
T Consensus 534 l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~ 609 (1490)
T TIGR01271 534 FPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLE 609 (1490)
T ss_pred ccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChH
Confidence 00 0112356788999999999999999999999999999954331 1224889999999986
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.18 E-value=9.2e-11 Score=96.77 Aligned_cols=115 Identities=15% Similarity=0.083 Sum_probs=63.4
Q ss_pred EeeCcceeecc-EEEEEeCCCchHHHHHHHHHHhccc-cCCCeEEEEcCCcccCCCCCCccccccchhhcCCC-------
Q 026207 17 ALYSINKIIFD-FFLSYFRPGVGKTTVMREIARVLSD-EFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVP------- 87 (241)
Q Consensus 17 ~~~~~~~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~-~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~------- 87 (241)
.+.+......+ +++|+||||||||||++++++...- ..|..+ . .... ..+ .......+.+.
T Consensus 15 ~v~n~i~l~~g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v---~-a~~~-----~~q-~~~l~~~~~~~d~l~~~~ 84 (199)
T cd03283 15 RVANDIDMEKKNGILITGSNMSGKSTFLRTIGVNVILAQAGAPV---C-ASSF-----ELP-PVKIFTSIRVSDDLRDGI 84 (199)
T ss_pred eecceEEEcCCcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEE---e-cCcc-----Ccc-cceEEEeccchhcccccc
Confidence 34555555555 8999999999999999999986521 113322 1 0000 000 00000011100
Q ss_pred CC---c-ccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHH--------HHHHhCCcEEEEeecCCCh
Q 026207 88 EP---S-LQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC--------RSIAERGVMLIGTAHGEWL 141 (241)
Q Consensus 88 ~~---~-~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~--------~~~~~~g~~vi~t~H~~~~ 141 (241)
+. . .+...+++.+-..+|+++++|||+++.|+... ....+.|.++|.++|....
T Consensus 85 s~~~~e~~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiivTH~~~~ 150 (199)
T cd03283 85 SYFYAELRRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIISTHDLEL 150 (199)
T ss_pred ChHHHHHHHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCcHHH
Confidence 00 0 11122222222238999999999998887322 1234568889999998863
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.4e-10 Score=102.81 Aligned_cols=124 Identities=15% Similarity=0.152 Sum_probs=84.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCC----CeEEEEcCCcccCCCCCCcc----------------c------ccc--
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQ----KRVVIVDTSNEIGGDGDIPH----------------S------AIG-- 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g----~~v~~i~~~~e~~~~~~~~~----------------~------~~~-- 79 (241)
++.+.||||.||||+++.|+|.+.|+.| .+|-|-.+......++.+.. . .+.
T Consensus 369 vigilGpNgiGKTTFvk~LAG~ikPdeg~~~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i 448 (591)
T COG1245 369 VIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDL 448 (591)
T ss_pred EEEEECCCCcchHHHHHHHhccccCCCCCCccceEeecceeecCCCCCcHHHHHHHhhhhhcccchhHHhhcCccchHHH
Confidence 8999999999999999999999998855 23332221110000000000 0 000
Q ss_pred chhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH--------HHHhCCcEEEEeecCCChhhhhcCCccc
Q 026207 80 TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR--------SIAERGVMLIGTAHGEWLENIIKNPILS 151 (241)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~--------~~~~~g~~vi~t~H~~~~~~~~~~p~l~ 151 (241)
.-+++.-+|++..|++++++++..++|+.+||||.+.+|.+... .+.+++.+.+.+-|..-+.+
T Consensus 449 ~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~d-------- 520 (591)
T COG1245 449 LERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMID-------- 520 (591)
T ss_pred HhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhh--------
Confidence 01245567889999999999999999999999999999985332 34556788888889886333
Q ss_pred cccccccEEEe
Q 026207 152 DLIGGVDTVTL 162 (241)
Q Consensus 152 ~l~~~~d~V~~ 162 (241)
.+ +|+++.
T Consensus 521 yv---sDr~iv 528 (591)
T COG1245 521 YV---SDRLIV 528 (591)
T ss_pred hh---hceEEE
Confidence 33 788877
|
|
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.3e-11 Score=100.47 Aligned_cols=64 Identities=9% Similarity=0.027 Sum_probs=47.0
Q ss_pred CCCcccHHHHHHHHHhcC----CcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccc
Q 026207 87 PEPSLQHKVMIEAVENHM----PEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIG 155 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~----p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~ 155 (241)
++.+++++..++.++..+ |+++++|||++++|+.... .....|.++|+++|... +...
T Consensus 156 LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~---------~~~~-- 224 (247)
T cd03275 156 LSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEE---------FFSK-- 224 (247)
T ss_pred cCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHH---------HHhh--
Confidence 345678888888888754 8999999999999984332 33445889999999853 2234
Q ss_pred cccEEEe
Q 026207 156 GVDTVTL 162 (241)
Q Consensus 156 ~~d~V~~ 162 (241)
||+++.
T Consensus 225 -~d~i~~ 230 (247)
T cd03275 225 -ADALVG 230 (247)
T ss_pred -CCeEEE
Confidence 788775
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.5e-11 Score=124.15 Aligned_cols=113 Identities=13% Similarity=0.082 Sum_probs=78.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCC-----CeEEEEcCCcccCCCC------C-Cccc--c-------------c--
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQ-----KRVVIVDTSNEIGGDG------D-IPHS--A-------------I-- 78 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g-----~~v~~i~~~~e~~~~~------~-~~~~--~-------------~-- 78 (241)
+++|+||||||||||++.+++.+.+..| .++.|+.+...+.... . .+.. . +
T Consensus 688 ~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l~~ 767 (1560)
T PTZ00243 688 LTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQ 767 (1560)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCChhhHHHHHHHHHHhhhHHHHHH
Confidence 7999999999999999999999987744 2466666443221100 0 0000 0 0
Q ss_pred ---cch----hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHHH-------HHhCCcEEEEeecCCC
Q 026207 79 ---GTA----RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRS-------IAERGVMLIGTAHGEW 140 (241)
Q Consensus 79 ---~~~----~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~~-------~~~~g~~vi~t~H~~~ 140 (241)
+.. .+...+|+|++++..+++++..+|+++++|||++.+|+..... ....|.++|.++|...
T Consensus 768 l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~ 843 (1560)
T PTZ00243 768 LGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVH 843 (1560)
T ss_pred hhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH
Confidence 000 1123366788999999999999999999999999999853321 1235889999999875
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=99.16 E-value=7.1e-11 Score=122.35 Aligned_cols=67 Identities=7% Similarity=0.061 Sum_probs=51.5
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTV 160 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V 160 (241)
+|+|++|+..+++++..+|++|++||+++.+|...-. .....++|+|+.+|..+ .+.+ +|+|
T Consensus 1354 LSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~--------ti~~----~DrI 1421 (1490)
T TIGR01271 1354 LSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVE--------ALLE----CQQF 1421 (1490)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHH--------HHHh----CCEE
Confidence 4557899999999999999999999999999985432 22235799999999875 3333 6888
Q ss_pred Ee-CCh
Q 026207 161 TL-GDE 165 (241)
Q Consensus 161 ~~-~~~ 165 (241)
+. .++
T Consensus 1422 lvL~~G 1427 (1490)
T TIGR01271 1422 LVIEGS 1427 (1490)
T ss_pred EEEECC
Confidence 77 443
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.5e-10 Score=97.37 Aligned_cols=53 Identities=13% Similarity=0.143 Sum_probs=40.2
Q ss_pred CCCcccHHHHHHHHHh----cCCcEEEEcCCCCHHhHHHHH------HHHhCCcEEEEeecCC
Q 026207 87 PEPSLQHKVMIEAVEN----HMPEVIIVDEIGTEAEAHACR------SIAERGVMLIGTAHGE 139 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~----~~p~vlilDE~~~~~d~~~~~------~~~~~g~~vi~t~H~~ 139 (241)
++.+++++..++.++. .+|+++++|||++++|+.... .....|.++|.++|..
T Consensus 167 lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~ 229 (251)
T cd03273 167 LSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKE 229 (251)
T ss_pred cCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 3446788888888876 478999999999999985433 1113588899999995
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.9e-10 Score=96.70 Aligned_cols=64 Identities=13% Similarity=0.159 Sum_probs=49.8
Q ss_pred CCCcccHHHHHHHHHhcC---CcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCcccccccc
Q 026207 87 PEPSLQHKVMIEAVENHM---PEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGG 156 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~---p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~ 156 (241)
+|++++|+..+++++..+ |+++++|||++++|+.... ...+.|.++|+++|..+ .++ .
T Consensus 170 LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~--------~i~-~--- 237 (261)
T cd03271 170 LSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLD--------VIK-C--- 237 (261)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--------HHH-h---
Confidence 455779999999999885 7999999999999985432 34456899999999886 232 3
Q ss_pred ccEEEe
Q 026207 157 VDTVTL 162 (241)
Q Consensus 157 ~d~V~~ 162 (241)
+|.++.
T Consensus 238 aD~ii~ 243 (261)
T cd03271 238 ADWIID 243 (261)
T ss_pred CCEEEE
Confidence 788776
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.2e-10 Score=101.71 Aligned_cols=123 Identities=18% Similarity=0.225 Sum_probs=83.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC-----------------------eEEEEcCCcccCC---------CCCCcc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK-----------------------RVVIVDTSNEIGG---------DGDIPH 75 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-----------------------~v~~i~~~~e~~~---------~~~~~~ 75 (241)
.+.|.|++|||||||-+++++++++. |. .+++-|....+.. ++...+
T Consensus 315 TlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh 393 (534)
T COG4172 315 TLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVH 393 (534)
T ss_pred eEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhc
Confidence 69999999999999999999999876 22 1233331111110 000000
Q ss_pred c-cccc---------------------hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHH-------H-HH
Q 026207 76 S-AIGT---------------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC-------R-SI 125 (241)
Q Consensus 76 ~-~~~~---------------------~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~-------~-~~ 125 (241)
. .... .++-..+|++.+|+.++++++..+|+++++|||++.+|.... + .-
T Consensus 394 ~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ 473 (534)
T COG4172 394 EPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQ 473 (534)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHH
Confidence 0 0000 012334677889999999999999999999999999988322 1 22
Q ss_pred HhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 126 AERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 126 ~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
.++|.+-++.+|..+ ++.-+ |+.|+.
T Consensus 474 ~k~~LsYLFISHDL~--------VvrAl---~~~viV 499 (534)
T COG4172 474 QKHGLSYLFISHDLA--------VVRAL---CHRVIV 499 (534)
T ss_pred HHhCCeEEEEeccHH--------HHHHh---hceEEE
Confidence 457889888889998 66667 888887
|
|
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.8e-10 Score=104.72 Aligned_cols=113 Identities=21% Similarity=0.260 Sum_probs=78.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCC----------CeEEEEcCCcccCCC-----CCCcc----c--------cc--
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQ----------KRVVIVDTSNEIGGD-----GDIPH----S--------AI-- 78 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g----------~~v~~i~~~~e~~~~-----~~~~~----~--------~~-- 78 (241)
.+||+||+|||||+|+|.++++.+...| ..+.|+++..-.... -..|. . .+
T Consensus 463 ~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r 542 (659)
T KOG0060|consen 463 NLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILR 542 (659)
T ss_pred eEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCCCccccchhheeeccCccccccccCCCHHHHHH
Confidence 6999999999999999999999974421 225555532211110 00010 0 00
Q ss_pred --------------c------chhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHH--H--HHHHHhCCcEEEE
Q 026207 79 --------------G------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH--A--CRSIAERGVMLIG 134 (241)
Q Consensus 79 --------------~------~~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~--~--~~~~~~~g~~vi~ 134 (241)
+ ......++|+|.+||..++++.-++|++-||||-++..+.. . .+...+.|+|.|+
T Consensus 543 ~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~giT~iS 622 (659)
T KOG0060|consen 543 ILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREMGITFIS 622 (659)
T ss_pred HHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHcCCeEEE
Confidence 0 00124567778899999999999999999999999886652 2 2355678999999
Q ss_pred eecCCC
Q 026207 135 TAHGEW 140 (241)
Q Consensus 135 t~H~~~ 140 (241)
+.|..+
T Consensus 623 VgHRkS 628 (659)
T KOG0060|consen 623 VGHRKS 628 (659)
T ss_pred eccHHH
Confidence 999887
|
|
| >TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.9e-10 Score=96.18 Aligned_cols=169 Identities=14% Similarity=0.071 Sum_probs=95.0
Q ss_pred eccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC--------CCCccc--cccchhhcCC--------
Q 026207 25 IFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD--------GDIPHS--AIGTARRMQV-------- 86 (241)
Q Consensus 25 ~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~--------~~~~~~--~~~~~~~~~~-------- 86 (241)
...+++|.||||+||||+..+++...... |.+++|++ .+|.... +..... ..+...-+..
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~-ge~~lyvs-~ee~~~~i~~~~~~~g~~~~~~~~~g~l~~~d~~~~~~~~~ 97 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM-GEPGIYVA-LEEHPVQVRRNMAQFGWDVRKYEEEGKFAIVDAFTGGIGEA 97 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CCcEEEEE-eeCCHHHHHHHHHHhCCCHHHHhhcCCEEEEeccccccccc
Confidence 34489999999999999998877654333 67889887 3332110 000000 0000000000
Q ss_pred -------CCCcccHH----HHHHHHHhcCCcEEEEcCCCCHHh--H----H----HHHHHHhCCcEEEEeecCCChhhhh
Q 026207 87 -------PEPSLQHK----VMIEAVENHMPEVIIVDEIGTEAE--A----H----ACRSIAERGVMLIGTAHGEWLENII 145 (241)
Q Consensus 87 -------~~~~~~~~----~~~~~~l~~~p~vlilDE~~~~~d--~----~----~~~~~~~~g~~vi~t~H~~~~~~~~ 145 (241)
........ .+.+.....++++++||.++.... + + ....+++.|++++.|.|.....+..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSls~l~~~~~~~~r~~l~~l~~~lk~~~~t~llt~~~~~~~~~~ 177 (237)
T TIGR03877 98 AEREKYVVKDPTDVRELIDVLRQAIRDINAKRVVIDSVTTLYITKPAMARSIVMQLKRVLSGLGCTSIFVSQVSVGERGF 177 (237)
T ss_pred cccccccccCcccHHHHHHHHHHHHHHhCCCEEEEcChhHhhcCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccccc
Confidence 00011222 223333456899999999886421 1 1 1124567899999998876523323
Q ss_pred cCCccccccccccEEEe---CChHHHHHHHHHhhhccCCCCC-ceEEEEEEcCceEE
Q 026207 146 KNPILSDLIGGVDTVTL---GDEEARARRCQKSILERKAPPT-FYFLIEMRERHYWV 198 (241)
Q Consensus 146 ~~p~l~~l~~~~d~V~~---~~~~~~~~~~~~~~k~r~g~~~-~~~~fe~~~~g~~~ 198 (241)
..+.++++ +|.|+. -......+|.++.+|.|..+.. -...|+++.+|+.+
T Consensus 178 ~~~~~~~~---~D~vI~L~~~~~~~~~~R~l~i~K~Rg~~~~~~~~~~~It~~Gi~v 231 (237)
T TIGR03877 178 GGPGVEHA---VDGIIRLDLDEIDGELKRSLIVWKMRGTKHSMRRHPFEITDKGIIV 231 (237)
T ss_pred cccceEEE---EeEEEEEEEEeeCCceEEEEEEEECCCCCCCCceEEEEEcCCCEEE
Confidence 33567888 999996 1111222366777777744333 33568888888843
|
Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga. |
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
Probab=99.07 E-value=2e-10 Score=106.83 Aligned_cols=176 Identities=11% Similarity=0.132 Sum_probs=106.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCC----------------CCC--
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQV----------------PEP-- 89 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~----------------~~~-- 89 (241)
+++|.||||+|||||+.+++...... |.+++|+. .+|.. .+...++.+++. .+.
T Consensus 265 ~~li~G~~G~GKt~l~~~f~~~~~~~-ge~~~y~s-~eEs~------~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~ 336 (484)
T TIGR02655 265 IILATGATGTGKTLLVSKFLENACAN-KERAILFA-YEESR------AQLLRNAYSWGIDFEEMEQQGLLKIICAYPESA 336 (484)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEE-eeCCH------HHHHHHHHHcCCChHHHhhCCcEEEEEcccccC
Confidence 79999999999999999999887655 68999998 66652 222222211111 111
Q ss_pred --cccHHHHHHHHHhcCCcEEEEcCCCCHHhH-----------HHHHHHHhCCcEEEEeecCCChhh--hhcCCcccccc
Q 026207 90 --SLQHKVMIEAVENHMPEVIIVDEIGTEAEA-----------HACRSIAERGVMLIGTAHGEWLEN--IIKNPILSDLI 154 (241)
Q Consensus 90 --~~~~~~~~~~~l~~~p~vlilDE~~~~~d~-----------~~~~~~~~~g~~vi~t~H~~~~~~--~~~~p~l~~l~ 154 (241)
+.....+.+.+...+|+++++|.+++.... .....+++.|++++.|.-.....+ ....+.+..+
T Consensus 337 ~~~~~~~~i~~~i~~~~~~~vvIDsi~~~~~~~~~~~~r~~~~~l~~~lk~~~it~~~t~~~~~~~~~~~~~~~~~s~l- 415 (484)
T TIGR02655 337 GLEDHLQIIKSEIADFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGFFTNTSDQFMGSHSITDSHISTI- 415 (484)
T ss_pred ChHHHHHHHHHHHHHcCCCEEEEcCHHHHHHhcCHHHHHHHHHHHHHHHhhCCCeEEEeecccccccCCccCCCCeeEe-
Confidence 123344555666779999999999876321 122356788999888733222111 1222356778
Q ss_pred ccccEEEe---CChHHHHHHHHHhhhccCCC-CCceEEEEEEcCceEEeecchHHHHHHhcCCCc
Q 026207 155 GGVDTVTL---GDEEARARRCQKSILERKAP-PTFYFLIEMRERHYWVTHKTEKSVDMLLRGKTP 215 (241)
Q Consensus 155 ~~~d~V~~---~~~~~~~~~~~~~~k~r~g~-~~~~~~fe~~~~g~~~~~~~~~~~~~~l~G~~~ 215 (241)
+|.|++ -+.....+|.+..+|.|... ..-..-|+++.+|+-+... -....-++.|...
T Consensus 416 --~D~ii~l~~~e~~g~~~r~i~V~K~R~~~~~~~~~~~~It~~Gi~v~~~-~~~~~~~~~g~~~ 477 (484)
T TIGR02655 416 --TDTILMLQYVEIRGEMSRAINVFKMRGSWHDKGIREFMISDKGPEIKDS-FRNFERIISGSPT 477 (484)
T ss_pred --eeEEEEEEEEecCCEEEEEEEEEEccCCCCCCceEEEEEcCCcEEEccc-ccCCcceEcCCCc
Confidence 999987 22223234677778887543 3345668888999855322 1223444555544
|
Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. |
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.7e-10 Score=94.62 Aligned_cols=165 Identities=15% Similarity=0.130 Sum_probs=89.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC--------CCCcccc--ccchh-------hcCCCCCc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD--------GDIPHSA--IGTAR-------RMQVPEPS 90 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~--------~~~~~~~--~~~~~-------~~~~~~~~ 90 (241)
++++.|+||+||||+..+++...... |.+++|++. ++.... +...... .+... .....+.+
T Consensus 27 ~~~i~G~~GsGKt~l~~~~~~~~~~~-g~~~~y~~~-e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~~~~~ 104 (234)
T PRK06067 27 LILIEGDHGTGKSVLSQQFVYGALKQ-GKKVYVITT-ENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEGFEWNSTL 104 (234)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhC-CCEEEEEEc-CCCHHHHHHHHHHCCCChhHHHhCCCceEEeccccccccCcch
Confidence 89999999999999999997654333 689999983 332110 0000000 00000 00000111
Q ss_pred --ccHHHHHHHHHhcCCcEEEEcCCCCHHhH---HH-------HHHHHhCCcEEEEeecCCChhhhhcCCcccccccccc
Q 026207 91 --LQHKVMIEAVENHMPEVIIVDEIGTEAEA---HA-------CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVD 158 (241)
Q Consensus 91 --~~~~~~~~~~l~~~p~vlilDE~~~~~d~---~~-------~~~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d 158 (241)
.....+...+...+|+++++||++...+. .. +......|.+++.++|.....+... ..+.++ +|
T Consensus 105 ~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~-~~~~~l---~D 180 (234)
T PRK06067 105 ANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELL-SRIRSI---CD 180 (234)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHH-HHHHhh---eE
Confidence 11122233333459999999999955332 11 1223556889899888765211111 245677 88
Q ss_pred EEEe---CChHHHHHHHHHhhhccCCCCC--ceEEEEEEc-CceEE
Q 026207 159 TVTL---GDEEARARRCQKSILERKAPPT--FYFLIEMRE-RHYWV 198 (241)
Q Consensus 159 ~V~~---~~~~~~~~~~~~~~k~r~g~~~--~~~~fe~~~-~g~~~ 198 (241)
.++. .+.....+|.++..|.|-.+.. -...|+++. +|+-+
T Consensus 181 gvI~L~~~~~~~~~~r~l~i~K~Rg~~~~~~~~~~~~I~~~~Gi~v 226 (234)
T PRK06067 181 VYLKLRAEQIGGRYVKVLEVVKLRGARKTTGNIISFDVDPAFGIKI 226 (234)
T ss_pred EEEEEEeeccCCEEeEEEEEEhhcCCCCCCCCEEEEEEcCCCCeEE
Confidence 8775 2222223366777777744333 345688875 58743
|
|
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.2e-09 Score=87.22 Aligned_cols=120 Identities=15% Similarity=0.145 Sum_probs=79.5
Q ss_pred eccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcc---cC-------------CCCCCccc------------
Q 026207 25 IFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNE---IG-------------GDGDIPHS------------ 76 (241)
Q Consensus 25 ~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e---~~-------------~~~~~~~~------------ 76 (241)
+..+..|.|++|||||||++++++.+.|+.| .+.|...... +. ..+++.+.
T Consensus 31 PGeVLgiVGESGSGKtTLL~~is~rl~p~~G-~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG 109 (258)
T COG4107 31 PGEVLGIVGESGSGKTTLLKCISGRLTPDAG-TVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAG 109 (258)
T ss_pred CCcEEEEEecCCCcHHhHHHHHhcccCCCCC-eEEEEcCCCCchhHhhhchHHHHHHhhhccceeecCccccceeeeccC
Confidence 4448999999999999999999999998854 4444431110 00 00111110
Q ss_pred -c------------ccc--------hh-----------hcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-
Q 026207 77 -A------------IGT--------AR-----------RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR- 123 (241)
Q Consensus 77 -~------------~~~--------~~-----------~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~- 123 (241)
+ .|. .. +-..++++++|+..+++-+...|.++|+|||+.++|.....
T Consensus 110 ~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQAR 189 (258)
T COG4107 110 GNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQAR 189 (258)
T ss_pred CccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHH
Confidence 0 000 00 11235678899999999999999999999999999883222
Q ss_pred -------HHHhCCcEEEEeecCCChhhhh
Q 026207 124 -------SIAERGVMLIGTAHGEWLENII 145 (241)
Q Consensus 124 -------~~~~~g~~vi~t~H~~~~~~~~ 145 (241)
...+-|..+++++|.......+
T Consensus 190 LLDllrgLv~~l~la~viVTHDl~VarLl 218 (258)
T COG4107 190 LLDLLRGLVRELGLAVVIVTHDLAVARLL 218 (258)
T ss_pred HHHHHHHHHHhcCceEEEEechhHHHHHh
Confidence 2234577889999998744444
|
|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.6e-09 Score=81.94 Aligned_cols=111 Identities=23% Similarity=0.256 Sum_probs=66.4
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCC
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMP 105 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p 105 (241)
...++|.||||+||||+++.++..+... +..+++++ ..............................+..++.+....|
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP-GGGVIYID-GEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKP 79 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC-CCCEEEEC-CEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCC
Confidence 3578999999999999999999998755 23577777 332211100000000000001111223456667777777778
Q ss_pred cEEEEcCCCCHHhHHHHH-------------HHHhCCcEEEEeecC
Q 026207 106 EVIIVDEIGTEAEAHACR-------------SIAERGVMLIGTAHG 138 (241)
Q Consensus 106 ~vlilDE~~~~~d~~~~~-------------~~~~~g~~vi~t~H~ 138 (241)
+++++||+....+..... .....+..++++.|.
T Consensus 80 ~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 80 DVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred CEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 999999998876653322 123346668887773
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.4e-09 Score=96.53 Aligned_cols=110 Identities=13% Similarity=0.236 Sum_probs=76.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC--------------------------C-CCccccccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD--------------------------G-DIPHSAIGT 80 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~--------------------------~-~~~~~~~~~ 80 (241)
++.|+|.|||||||+++.+.|+..|+.|. ++++ +.-...+ . ..++..-.+
T Consensus 351 lvFliG~NGsGKST~~~LLtGL~~PqsG~--I~ld-g~pV~~e~ledYR~LfSavFsDyhLF~~ll~~e~~as~q~i~~~ 427 (546)
T COG4615 351 LVFLIGGNGSGKSTLAMLLTGLYQPQSGE--ILLD-GKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKASPQLIEKW 427 (546)
T ss_pred EEEEECCCCCcHHHHHHHHhcccCCCCCc--eeEC-CccCCCCCHHHHHHHHHHHhhhHhhhHhhhCCccCCChHHHHHH
Confidence 89999999999999999999999999777 6665 2211110 0 000000000
Q ss_pred hhh---------------cCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH--------HHHhCCcEEEEeec
Q 026207 81 ARR---------------MQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR--------SIAERGVMLIGTAH 137 (241)
Q Consensus 81 ~~~---------------~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~--------~~~~~g~~vi~t~H 137 (241)
..+ ..-.|.|++.+.++-.++..+-+++++||-.+..||.-.+ ..++.|+||++.+|
T Consensus 428 LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsH 507 (546)
T COG4615 428 LQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISH 507 (546)
T ss_pred HHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEec
Confidence 000 1113456788888888888888999999999999984332 56788999999999
Q ss_pred CCC
Q 026207 138 GEW 140 (241)
Q Consensus 138 ~~~ 140 (241)
...
T Consensus 508 Dd~ 510 (546)
T COG4615 508 DDH 510 (546)
T ss_pred Cch
Confidence 885
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.8e-10 Score=100.31 Aligned_cols=62 Identities=19% Similarity=0.154 Sum_probs=50.2
Q ss_pred hcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHH-------HHHHhCCcEEEEeecCCChhhh
Q 026207 83 RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC-------RSIAERGVMLIGTAHGEWLENI 144 (241)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~-------~~~~~~g~~vi~t~H~~~~~~~ 144 (241)
.+..+|++..|+.++++++..++|+.++|||.+.+|.... +...+.++.|+.+-|....-+.
T Consensus 210 ~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~ 278 (591)
T COG1245 210 DVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDY 278 (591)
T ss_pred hhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHH
Confidence 3455788889999999999999999999999999998433 3445558999999999973333
|
|
| >KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.02 E-value=7.6e-10 Score=101.06 Aligned_cols=114 Identities=15% Similarity=0.237 Sum_probs=78.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccC-------CCeEEEEcCCcccCCCC-----CCcc------------ccc-----
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEF-------QKRVVIVDTSNEIGGDG-----DIPH------------SAI----- 78 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~-------g~~v~~i~~~~e~~~~~-----~~~~------------~~~----- 78 (241)
-+||+||||||||+|.+.+.|+.+-.. ..++.|+++..-..... ..|. +.+
T Consensus 510 hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPYms~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~ 589 (728)
T KOG0064|consen 510 HLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILD 589 (728)
T ss_pred eEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCccCcCcccceeecCCcHHHHHhcCCCHHHHHHHHH
Confidence 499999999999999999999987431 12355555332221100 0010 000
Q ss_pred ------------c---chhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhH----HHHHHHHhCCcEEEEeecCC
Q 026207 79 ------------G---TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA----HACRSIAERGVMLIGTAHGE 139 (241)
Q Consensus 79 ------------~---~~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~----~~~~~~~~~g~~vi~t~H~~ 139 (241)
| .+..-.++++|.+|+..+++..-|+|...++||.++...+ .....+++.|++++..+|..
T Consensus 590 ~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~~gi~llsithrp 669 (728)
T KOG0064|consen 590 IVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDAGISLLSITHRP 669 (728)
T ss_pred HhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHhcCceEEEeecCc
Confidence 0 0012345677889999999999999999999999987554 23346778899999999998
Q ss_pred Ch
Q 026207 140 WL 141 (241)
Q Consensus 140 ~~ 141 (241)
++
T Consensus 670 sl 671 (728)
T KOG0064|consen 670 SL 671 (728)
T ss_pred cH
Confidence 74
|
|
| >PRK04328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.5e-10 Score=94.80 Aligned_cols=168 Identities=15% Similarity=0.063 Sum_probs=94.5
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC--------CCCccc--cccchhhcCCCC-------
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD--------GDIPHS--AIGTARRMQVPE------- 88 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~--------~~~~~~--~~~~~~~~~~~~------- 88 (241)
..+++|.||||+|||+|..+++..-... |.+++|++ .+|.... +..... ..+...-+....
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~~~-ge~~lyis-~ee~~~~i~~~~~~~g~d~~~~~~~~~l~iid~~~~~~~~~~ 100 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGLQM-GEPGVYVA-LEEHPVQVRRNMRQFGWDVRKYEEEGKFAIVDAFTGGIGSAA 100 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhc-CCcEEEEE-eeCCHHHHHHHHHHcCCCHHHHhhcCCEEEEecccccccccc
Confidence 3489999999999999999877653333 57888887 3332110 000000 000000000000
Q ss_pred --------CcccH----HHHHHHHHhcCCcEEEEcCCCCHHh--H----H----HHHHHHhCCcEEEEeecCCChhhhhc
Q 026207 89 --------PSLQH----KVMIEAVENHMPEVIIVDEIGTEAE--A----H----ACRSIAERGVMLIGTAHGEWLENIIK 146 (241)
Q Consensus 89 --------~~~~~----~~~~~~~l~~~p~vlilDE~~~~~d--~----~----~~~~~~~~g~~vi~t~H~~~~~~~~~ 146 (241)
..... ..+.+.....+|+++++|.+++... + . ....+++.|++++.|.|...-++...
T Consensus 101 ~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSlt~l~~~~~~~~r~~~~~l~~~lk~~g~t~llt~e~~~~~~~~~ 180 (249)
T PRK04328 101 KREKYVVKDPDDVRELIDVLRQAIKDIGAKRVVIDSVSTLYLTKPAMARSIVMQLKRVLSGLGCTAIFVSQVSVGERGFG 180 (249)
T ss_pred ccccccccCcccHHHHHHHHHHHHHhhCCCEEEEeChhHhhcCChHHHHHHHHHHHHHHHhCCCEEEEEECccccccccC
Confidence 00111 2233344456899999999875421 1 1 11235678999999988875233344
Q ss_pred CCccccccccccEEEe-C--ChHHHHHHHHHhhhccCCCCC-ceEEEEEEcCceEE
Q 026207 147 NPILSDLIGGVDTVTL-G--DEEARARRCQKSILERKAPPT-FYFLIEMRERHYWV 198 (241)
Q Consensus 147 ~p~l~~l~~~~d~V~~-~--~~~~~~~~~~~~~k~r~g~~~-~~~~fe~~~~g~~~ 198 (241)
++.++++ ||.|+. . +.....+|.++..|.|..+-+ -...|+++..|+.+
T Consensus 181 ~~~~~~~---~D~vI~L~~~~~~~~~~R~l~I~K~Rg~~~~~~~~~~~It~~Gi~v 233 (249)
T PRK04328 181 GPGVEHA---VDGIIRLDLDEIDGELKRSLIVWKMRGTKHSMRRHPFEITDKGIVV 233 (249)
T ss_pred CCCcEEE---EEEEEEEEEEecCCcEEEEEEEEEccCCCCCCceEEEEEcCCCEEE
Confidence 5667888 999996 1 111222366666777744322 34568888888843
|
|
| >smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.1e-09 Score=89.26 Aligned_cols=106 Identities=13% Similarity=0.168 Sum_probs=56.4
Q ss_pred EEEEEeCCCchHHHHHHHHHH-hccccCCC-------eEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHH
Q 026207 28 FFLSYFRPGVGKTTVMREIAR-VLSDEFQK-------RVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEA 99 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~-~l~~~~g~-------~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (241)
+++|+||||+||||++++++- .+-.+.|. ++.+++.-...... ..... .....++.+++ .+..
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~----~d~~~--~~~s~fs~~~~---~l~~ 71 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGA----SDSLA--QGLSTFMVEMK---ETAN 71 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCC----CCchh--ccccHHHHHHH---HHHH
Confidence 478999999999999999983 22222121 11111100000000 00000 00111111222 2444
Q ss_pred HHhc--CCcEEEEcCCCCHHhHHHH--------HHHHh-CCcEEEEeecCCChh
Q 026207 100 VENH--MPEVIIVDEIGTEAEAHAC--------RSIAE-RGVMLIGTAHGEWLE 142 (241)
Q Consensus 100 ~l~~--~p~vlilDE~~~~~d~~~~--------~~~~~-~g~~vi~t~H~~~~~ 142 (241)
++.. +|+++++|||+++.|+... ....+ .+.+++.++|...+.
T Consensus 72 ~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~ 125 (185)
T smart00534 72 ILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELT 125 (185)
T ss_pred HHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHH
Confidence 4444 8999999999999887421 12233 378899999987633
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.3e-09 Score=99.80 Aligned_cols=57 Identities=12% Similarity=0.167 Sum_probs=45.2
Q ss_pred cCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHHH----HHhCCc-EEEEeecCCC
Q 026207 84 MQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRS----IAERGV-MLIGTAHGEW 140 (241)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~~----~~~~g~-~vi~t~H~~~ 140 (241)
+.-+|+|.+.|.++++++-.+|++++||||++.+|..++.. .+.-.. +++.++|.-+
T Consensus 219 ~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QD 280 (614)
T KOG0927|consen 219 VKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQD 280 (614)
T ss_pred hhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecchh
Confidence 34467788999999999999999999999999999987752 223233 7888888765
|
|
| >TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.7e-09 Score=90.59 Aligned_cols=166 Identities=14% Similarity=0.101 Sum_probs=94.4
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC--------CCCccccccchhhcCCC--C-Ccc--c
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD--------GDIPHSAIGTARRMQVP--E-PSL--Q 92 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~--------~~~~~~~~~~~~~~~~~--~-~~~--~ 92 (241)
..+++|.|+||+|||++..+++...... |.+++|++ .++.... +......... .+.+. + ... .
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~~-g~~~~y~s-~e~~~~~l~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~ 91 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLKN-GEKAMYIS-LEEREERILGYAKSKGWDLEDYIDK--SLYIVRLDPSDFKTS 91 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEE-CCCCHHHHHHHHHHcCCChHHHHhC--CeEEEecCHHHHHhh
Confidence 4589999999999999999888654334 68899997 4443210 0000000000 00000 0 000 0
Q ss_pred HHH----HHHHHHhcCCcEEEEcCCCCHHh-----H-------HHHHHHHhCCcEEEEeecCCChhhhhcCC-ccccccc
Q 026207 93 HKV----MIEAVENHMPEVIIVDEIGTEAE-----A-------HACRSIAERGVMLIGTAHGEWLENIIKNP-ILSDLIG 155 (241)
Q Consensus 93 ~~~----~~~~~l~~~p~vlilDE~~~~~d-----~-------~~~~~~~~~g~~vi~t~H~~~~~~~~~~p-~l~~l~~ 155 (241)
... +...+...+++++++|.++.... . ......++.|.++++++|.+........+ .++++
T Consensus 92 ~~~l~~~~~~~i~~~~~~~vVIDsls~l~~~~~~~~~~r~~l~~l~~~lk~~~~tvll~s~~~~~~~~~~~~~~~~~l-- 169 (224)
T TIGR03880 92 LNRIKNELPILIKELGASRVVIDPISLLETLFDDDAERRTELFRFYSSLRETGVTTILTSEADKTNVFASKYGLIEYL-- 169 (224)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcChHHHhhhcCCHHHHHHHHHHHHHHHHhCCCEEEEEEcccCCCCCccCCCceEEE--
Confidence 111 11223346899999999775421 1 12224567799999999976511111112 36788
Q ss_pred cccEEEe-C-C--hH-HHHHHHHHhhhccCC-CCCceEEEEEEcCceEE
Q 026207 156 GVDTVTL-G-D--EE-ARARRCQKSILERKA-PPTFYFLIEMRERHYWV 198 (241)
Q Consensus 156 ~~d~V~~-~-~--~~-~~~~~~~~~~k~r~g-~~~~~~~fe~~~~g~~~ 198 (241)
||.|+. . . +. ...++.++.+|.|.. ...-...|++++.|+-+
T Consensus 170 -~D~vI~L~~~~~~~~~~~~r~l~v~K~Rg~~~~~~~~~~~i~~~Gi~v 217 (224)
T TIGR03880 170 -ADGVIILKYVRNSDLRDVRLAVEVVKMRRSKHSREIKPYEITDSGITV 217 (224)
T ss_pred -EeEEEEEeeeecccCcceEEEEEEEEccCCCCCCceEEEEEcCCcEEE
Confidence 999997 2 1 11 222345677888865 34466789999999843
|
This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself. |
| >cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.7e-09 Score=88.15 Aligned_cols=42 Identities=14% Similarity=0.069 Sum_probs=30.3
Q ss_pred eEEEEEeEEeeCc--ceeeccEEEEEeCCCchHHHHHHHHHHhcc
Q 026207 9 LLIVKFFYALYSI--NKIIFDFFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 9 ~~~~r~~~~~~~~--~~~~~g~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
++.++.++.. .. .....++.+|+||||+||||++.++.-.+.
T Consensus 5 ~i~i~nfr~~-~~~~i~~~~g~n~i~G~NgsGKS~lleAi~~~l~ 48 (213)
T cd03277 5 RIKLENFVTY-DETEFRPGPSLNMIIGPNGSGKSSIVCAICLGLG 48 (213)
T ss_pred EEEEeCCCCc-ceeEEecCCCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 4455555543 33 233457899999999999999999987764
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=6.3e-10 Score=101.74 Aligned_cols=118 Identities=14% Similarity=0.161 Sum_probs=75.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCe-------EEEEcC--CcccCCC--------CCCc--------cccccch-
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKR-------VVIVDT--SNEIGGD--------GDIP--------HSAIGTA- 81 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~-------v~~i~~--~~e~~~~--------~~~~--------~~~~~~~- 81 (241)
-+.++||||||||||++.+.+.+.|..|.- +.+..+ ..+...+ ...+ ...+|++
T Consensus 418 rvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfg 497 (614)
T KOG0927|consen 418 RVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFG 497 (614)
T ss_pred ceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhC
Confidence 389999999999999999999998874321 111110 0000000 0000 0011111
Q ss_pred -------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH---HHHh-CCcEEEEeecCCChhhhh
Q 026207 82 -------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR---SIAE-RGVMLIGTAHGEWLENII 145 (241)
Q Consensus 82 -------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~---~~~~-~g~~vi~t~H~~~~~~~~ 145 (241)
..+..+|.+++.++.++.+...+|.+++||||++++|...+. .+.+ -.-.|+.++|..-+-+.+
T Consensus 498 Ltgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~~Ggvv~vSHDfrlI~qV 572 (614)
T KOG0927|consen 498 LTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEFPGGVVLVSHDFRLISQV 572 (614)
T ss_pred CCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhccCCceeeeechhhHHHHH
Confidence 123446778899999999999999999999999999986554 3433 234588888988744433
|
|
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.9e-09 Score=88.80 Aligned_cols=107 Identities=14% Similarity=0.117 Sum_probs=58.7
Q ss_pred cEEEEEeCCCchHHHHHHHHHH--hccccCCC-------eEEEEcCCcccCCCCCCccccccchhhcCCCCC--cccHHH
Q 026207 27 DFFLSYFRPGVGKTTVMREIAR--VLSDEFQK-------RVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEP--SLQHKV 95 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~--~l~~~~g~-------~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 95 (241)
..++|+||||+||||+++.++. .++.. |. ++.+.++-...... ...+ ..-.+. ..-++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~~~la~~-G~~v~a~~~~~~~~d~i~~~l~~----~~si-----~~~~S~f~~el~~l 99 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALIVFLAHI-GSFVPADSATIGLVDKIFTRMSS----RESV-----SSGQSAFMIDLYQV 99 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHHhC-CCeeEcCCcEEeeeeeeeeeeCC----ccCh-----hhccchHHHHHHHH
Confidence 4799999999999999999984 33222 22 11222210000000 0000 000011 112344
Q ss_pred HHHHHHhcCCcEEEEcCCCCHHhHHH--------HHHHHhC---CcEEEEeecCCChhh
Q 026207 96 MIEAVENHMPEVIIVDEIGTEAEAHA--------CRSIAER---GVMLIGTAHGEWLEN 143 (241)
Q Consensus 96 ~~~~~l~~~p~vlilDE~~~~~d~~~--------~~~~~~~---g~~vi~t~H~~~~~~ 143 (241)
........+|.++++|||+++.|+.. +....+. +.++++++|......
T Consensus 100 ~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~ 158 (213)
T cd03281 100 SKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFN 158 (213)
T ss_pred HHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHH
Confidence 44555567899999999999987631 1223333 247899999886443
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.1e-09 Score=98.83 Aligned_cols=188 Identities=15% Similarity=0.023 Sum_probs=103.4
Q ss_pred eccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC--------CCCcccc--ccchhhcCC--------
Q 026207 25 IFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD--------GDIPHSA--IGTARRMQV-------- 86 (241)
Q Consensus 25 ~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~--------~~~~~~~--~~~~~~~~~-------- 86 (241)
...+++|.||||||||||..+++..-....|.+++|+. .+|.... +...... .+...-+..
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs-~eE~~~~l~~~~~~~G~~~~~~~~~g~l~~~~~~~~~~~~~ 98 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVT-FEESPQDIIKNARSFGWDLQKLVDEGKLFILDASPDPEGQD 98 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEE-EecCHHHHHHHHHHcCCCHHHHhhcCceEEEecCchhcccc
Confidence 34489999999999999999986543222247888887 4443211 0000000 000000000
Q ss_pred CCCcccH----HHHHHHHHhcCCcEEEEcCCCCHH---hH---------HHHHHHHhCCcEEEEeecCCChhhhhcCCcc
Q 026207 87 PEPSLQH----KVMIEAVENHMPEVIIVDEIGTEA---EA---------HACRSIAERGVMLIGTAHGEWLENIIKNPIL 150 (241)
Q Consensus 87 ~~~~~~~----~~~~~~~l~~~p~vlilDE~~~~~---d~---------~~~~~~~~~g~~vi~t~H~~~~~~~~~~p~l 150 (241)
....... ......+-..+++.++||.+.... +. ..+...++.|++++.++|..+.......+.+
T Consensus 99 ~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~ 178 (484)
T TIGR02655 99 VVGGFDLSALIERINYAIRKYKAKRVSIDSVTAVFQQYDAVSVVRREIFRLVARLKQIGVTTVMTTERIEEYGPIARYGV 178 (484)
T ss_pred ccccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhhhhcCchHHHHHHHHHHHHHHHHCCCEEEEEecCcccccccccCCc
Confidence 0001111 223334445689999999765432 11 1122456679999999998753222333334
Q ss_pred -ccccccccEEEe-C--ChHHHHHHHHHhhhccCCCCC--ceEEEEEEcCceEEeec----------------chHHHHH
Q 026207 151 -SDLIGGVDTVTL-G--DEEARARRCQKSILERKAPPT--FYFLIEMRERHYWVTHK----------------TEKSVDM 208 (241)
Q Consensus 151 -~~l~~~~d~V~~-~--~~~~~~~~~~~~~k~r~g~~~--~~~~fe~~~~g~~~~~~----------------~~~~~~~ 208 (241)
+.+ ||.|+. . ......+|.++.+|.| |... -...|+++++|+.+... .-..+|.
T Consensus 179 ~e~l---aDgVI~L~~~~~~~~~~R~l~I~K~R-gs~~~~~~~~~~It~~Gi~v~p~~~~~~~~~~~~~~~~tGi~~lD~ 254 (484)
T TIGR02655 179 EEFV---SDNVVILRNVLEGERRRRTLEILKLR-GTSHMKGEYPFTITDHGINIFPLGAMRLTQRSSNVRVSSGVVRLDE 254 (484)
T ss_pred eeEe---eeeEEEEEEEecCCEEEEEEEEEECC-CCCcCCceEEEEEcCCcEEEEecccccccccccccccCCChHhHHH
Confidence 777 999996 1 1111223677778887 4332 23468888888733210 0144788
Q ss_pred HhcCCCccc
Q 026207 209 LLRGKTPLV 217 (241)
Q Consensus 209 ~l~G~~~~~ 217 (241)
++.|+.|.-
T Consensus 255 ~lgGG~~~g 263 (484)
T TIGR02655 255 MCGGGFFKD 263 (484)
T ss_pred HhcCCccCC
Confidence 888887753
|
Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.3e-09 Score=107.23 Aligned_cols=142 Identities=15% Similarity=0.145 Sum_probs=93.0
Q ss_pred eecc-EEEEEeCCCchHHHHHHHHHHhccccCC-----CeEEEEcCCcccC----------CCCCCccc-----------
Q 026207 24 IIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQ-----KRVVIVDTSNEIG----------GDGDIPHS----------- 76 (241)
Q Consensus 24 ~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g-----~~v~~i~~~~e~~----------~~~~~~~~----------- 76 (241)
+..| +++++||.|||||+|+.+++|.++...| ..+.|+++..=+. +.....+.
T Consensus 544 i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~ 623 (1381)
T KOG0054|consen 544 IKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQNGTVRENILFGSPYDEERYDKVIKACALK 623 (1381)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHhhCCcHHHhhhcCccccHHHHHHHHHHccCH
Confidence 4444 8999999999999999999999987643 2355665321110 00000000
Q ss_pred -c-----ccchhhc----CCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCC
Q 026207 77 -A-----IGTARRM----QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGE 139 (241)
Q Consensus 77 -~-----~~~~~~~----~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~ 139 (241)
+ .|....+ -.+|+|++||..+|+|.-+++|+.++|.|.+..|++... ....+++|+|.++|..
T Consensus 624 ~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql 703 (1381)
T KOG0054|consen 624 KDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQL 703 (1381)
T ss_pred hHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCch
Confidence 0 0000011 125678899999999999999999999999999995443 3344689999999966
Q ss_pred ChhhhhcCCccccccccccEEEe-CChHHHHHHHHHhhh
Q 026207 140 WLENIIKNPILSDLIGGVDTVTL-GDEEARARRCQKSIL 177 (241)
Q Consensus 140 ~~~~~~~~p~l~~l~~~~d~V~~-~~~~~~~~~~~~~~k 177 (241)
. .+.+ ||.|++ .++.....+...+++
T Consensus 704 ~--------~L~~----ad~Iivl~~G~I~~~Gty~el~ 730 (1381)
T KOG0054|consen 704 Q--------FLPH----ADQIIVLKDGKIVESGTYEELL 730 (1381)
T ss_pred h--------hhhh----CCEEEEecCCeEecccCHHHHH
Confidence 4 3444 688888 555443335555554
|
|
| >TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.5e-09 Score=90.81 Aligned_cols=164 Identities=13% Similarity=0.031 Sum_probs=92.1
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCcccc------ccc-----hhhcCCCCC-c----
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSA------IGT-----ARRMQVPEP-S---- 90 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~------~~~-----~~~~~~~~~-~---- 90 (241)
.+++|+||||+||||+..+++...... |.+++|++ .++.... ..+.. .+. ...+-..+. .
T Consensus 37 s~~lI~G~pGtGKT~l~~qf~~~~a~~-Ge~vlyis-~Ee~~~~--~~~~l~~~a~~~g~d~~~~~~~l~~id~~~~~~~ 112 (259)
T TIGR03878 37 SVINITGVSDTGKSLMVEQFAVTQASR-GNPVLFVT-VESPANF--VYTSLKERAKAMGVDFDKIEENIILIDAASSTEL 112 (259)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhC-CCcEEEEE-ecCCchH--HHHHHHHHHHHcCCCHHHHhCCEEEEECCCchhh
Confidence 389999999999999999987765444 67899998 3332100 00000 000 000111110 0
Q ss_pred -ccHHHH----HHHHHhcCCcEEEEcCCCCHHhH--H--------HHHHHHhCCcEEEEeecCCChhh----hhc-CCcc
Q 026207 91 -LQHKVM----IEAVENHMPEVIIVDEIGTEAEA--H--------ACRSIAERGVMLIGTAHGEWLEN----IIK-NPIL 150 (241)
Q Consensus 91 -~~~~~~----~~~~l~~~p~vlilDE~~~~~d~--~--------~~~~~~~~g~~vi~t~H~~~~~~----~~~-~p~l 150 (241)
...... ...+...+|+++|+|.+++.... . ....+++.|++++++.|..+... ... ...+
T Consensus 113 ~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~~~~~~~r~~~~~L~~~lk~~~~t~ll~~e~~~~~~~~~~~~~~~~~~ 192 (259)
T TIGR03878 113 RENVPNLLATLAYAIKEYKVKNTVIDSITGLYEAKEMMAREIVRQLFNFMKKWYQTALFVSQKRSGHEELSAEAAGGYAV 192 (259)
T ss_pred hhhHHHHHHHHHHHHHhhCCCEEEEcCchHhcccchHHHHHHHHHHHHHHHHcCCeEEEEeccccCcccccccccCCcce
Confidence 112222 23344668999999999753211 1 11245677999888887543111 111 2257
Q ss_pred ccccccccEEEe-CC--------------hHHHHHHHHHhhhccCCC-CCceEEEEEEcCceE
Q 026207 151 SDLIGGVDTVTL-GD--------------EEARARRCQKSILERKAP-PTFYFLIEMRERHYW 197 (241)
Q Consensus 151 ~~l~~~~d~V~~-~~--------------~~~~~~~~~~~~k~r~g~-~~~~~~fe~~~~g~~ 197 (241)
+++ ||.|+. .. ......|.++.+|.|... ..-...|+++++|+.
T Consensus 193 ~~l---~D~vI~L~~~~~~~~~~~~~~~~~~~~~~R~l~I~KmRg~~h~~~~~~~~It~~Gi~ 252 (259)
T TIGR03878 193 SHI---VDGTIVLAKQLIMSRFDASLYKKPIGEIVRLFRIDGCRMCGHDTKTHVLEIDETGLV 252 (259)
T ss_pred eEe---eccEEEEeeeeccchhhhhhccccccceEEEEEEEEccCCCCCCceeEEEEcCCceE
Confidence 788 899886 31 112223666667877532 334567888888864
|
This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles. |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.95 E-value=7.9e-10 Score=99.17 Aligned_cols=112 Identities=19% Similarity=0.199 Sum_probs=74.4
Q ss_pred EEEEeCCCchHHHHHHHHHHhccccCC-------CeEEEEcCC-------cc----cCCC-CCCcccc----ccch----
Q 026207 29 FLSYFRPGVGKTTVMREIARVLSDEFQ-------KRVVIVDTS-------NE----IGGD-GDIPHSA----IGTA---- 81 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~l~~~~g-------~~v~~i~~~-------~e----~~~~-~~~~~~~----~~~~---- 81 (241)
|.|.||||.|||||++.+.+.+.|..| .++..+++- ++ +.-. ...|++. +|.+
T Consensus 616 iaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~s 695 (807)
T KOG0066|consen 616 IAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFGLAS 695 (807)
T ss_pred eEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhhhhh
Confidence 999999999999999999999987733 134444321 11 1000 1111111 1110
Q ss_pred ----hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH---HHHh-CCcEEEEeecCCC
Q 026207 82 ----RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR---SIAE-RGVMLIGTAHGEW 140 (241)
Q Consensus 82 ----~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~---~~~~-~g~~vi~t~H~~~ 140 (241)
..+.-++++.+.++.++.+-...||+||||||++.+|.+.+. .+.+ -.-.||+++|...
T Consensus 696 HAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney~GgVi~VsHDeR 762 (807)
T KOG0066|consen 696 HAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEYNGGVIMVSHDER 762 (807)
T ss_pred ccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhccCcEEEEecccc
Confidence 124446788999999999999999999999999999986554 3332 2445777778764
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.6e-09 Score=98.29 Aligned_cols=111 Identities=21% Similarity=0.263 Sum_probs=72.9
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCC--------C-CCCcccc--------------------
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGG--------D-GDIPHSA-------------------- 77 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~--------~-~~~~~~~-------------------- 77 (241)
..+.+.||+|+||||+++.+.+...-..|. +.+| +.++.. . +.+|+..
T Consensus 565 ktvAlVG~SGaGKSTimRlLfRffdv~sGs--I~iD-gqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~Asn 641 (790)
T KOG0056|consen 565 KTVALVGPSGAGKSTIMRLLFRFFDVNSGS--ITID-GQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASN 641 (790)
T ss_pred cEEEEECCCCCchhHHHHHHHHHhhccCce--EEEc-CchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCCh
Confidence 379999999999999999999988655333 4444 322210 0 1222210
Q ss_pred --------------------ccchhhcC----CCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHH---HHHHH---Hh
Q 026207 78 --------------------IGTARRMQ----VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH---ACRSI---AE 127 (241)
Q Consensus 78 --------------------~~~~~~~~----~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~---~~~~~---~~ 127 (241)
-|+..+++ -+|+|.+|++++++.....|.+|++||.++.+|-. ++..+ .-
T Consensus 642 eevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlc 721 (790)
T KOG0056|consen 642 EEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLC 721 (790)
T ss_pred HHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHh
Confidence 00111111 25677899999999999999999999999998872 22211 12
Q ss_pred CCcEEEEeecCCC
Q 026207 128 RGVMLIGTAHGEW 140 (241)
Q Consensus 128 ~g~~vi~t~H~~~ 140 (241)
.|.|-|.+.|..+
T Consensus 722 a~RTtIVvAHRLS 734 (790)
T KOG0056|consen 722 ANRTTIVVAHRLS 734 (790)
T ss_pred cCCceEEEeeeeh
Confidence 4667667778876
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=9.9e-09 Score=91.37 Aligned_cols=65 Identities=23% Similarity=0.313 Sum_probs=53.5
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHH-------HH-HHhCCcEEEEeecCCChhhhhcCCcccccccccc
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC-------RS-IAERGVMLIGTAHGEWLENIIKNPILSDLIGGVD 158 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~-------~~-~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d 158 (241)
+|++.+|+++++.++..+|+++|-|||++.+|.... +. -.+.|..++..+|..+ .+.++ +|
T Consensus 158 LSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~--------iVr~~---AD 226 (534)
T COG4172 158 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLG--------IVRKF---AD 226 (534)
T ss_pred cCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHH--------HHHHh---hh
Confidence 567889999999999999999999999999998322 12 2356899999999998 66777 78
Q ss_pred EEEe
Q 026207 159 TVTL 162 (241)
Q Consensus 159 ~V~~ 162 (241)
+|..
T Consensus 227 rV~V 230 (534)
T COG4172 227 RVYV 230 (534)
T ss_pred hEEE
Confidence 8776
|
|
| >PRK04296 thymidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.6e-09 Score=85.09 Aligned_cols=124 Identities=17% Similarity=0.235 Sum_probs=71.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCC-cccCCCCCCccccccchhhcCCCCC---cccHHHHHHHH--H
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTS-NEIGGDGDIPHSAIGTARRMQVPEP---SLQHKVMIEAV--E 101 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~-~e~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~--l 101 (241)
+++++||+|+||||++..++...... +.+++++... .+....... +.+++..-. .......+..+ .
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~-g~~v~i~k~~~d~~~~~~~i-------~~~lg~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEER-GMKVLVFKPAIDDRYGEGKV-------VSRIGLSREAIPVSSDTDIFELIEEE 75 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHc-CCeEEEEeccccccccCCcE-------ecCCCCcccceEeCChHHHHHHHHhh
Confidence 78999999999999999998887654 6788877421 111111000 011111000 11222222222 2
Q ss_pred hcCCcEEEEcCCCCHHh--H-HHHHHHHhCCcEEEEeecCCChhhhhcC--CccccccccccEEEe
Q 026207 102 NHMPEVIIVDEIGTEAE--A-HACRSIAERGVMLIGTAHGEWLENIIKN--PILSDLIGGVDTVTL 162 (241)
Q Consensus 102 ~~~p~vlilDE~~~~~d--~-~~~~~~~~~g~~vi~t~H~~~~~~~~~~--p~l~~l~~~~d~V~~ 162 (241)
..++++|++||++.... . +.+..+++.|++++.+.+..+..+..-. +.+..+ +|.|+.
T Consensus 76 ~~~~dvviIDEaq~l~~~~v~~l~~~l~~~g~~vi~tgl~~~~~~~~f~~~~~L~~~---aD~V~~ 138 (190)
T PRK04296 76 GEKIDCVLIDEAQFLDKEQVVQLAEVLDDLGIPVICYGLDTDFRGEPFEGSPYLLAL---ADKVTE 138 (190)
T ss_pred CCCCCEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEecCcccccCcCchHHHHHHh---cCeEEE
Confidence 34789999999986522 2 2334557889999999888764432211 144444 777764
|
|
| >COG1855 ATPase (PilT family) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.9e-10 Score=100.50 Aligned_cols=124 Identities=19% Similarity=0.215 Sum_probs=88.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCcE
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEV 107 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~v 107 (241)
-+|+.||||+||||++.+++..+... |+-|-+++.+.++..... + .|+.-+ .-.....-..++..+||.
T Consensus 265 GILIAG~PGaGKsTFaqAlAefy~~~-GkiVKTmEsPRDl~v~~e-----I---TQYs~l--~g~me~t~DiLLLvRPDY 333 (604)
T COG1855 265 GILIAGAPGAGKSTFAQALAEFYASQ-GKIVKTMESPRDLQVSPE-----I---TQYSPL--EGDMEKTADILLLVRPDY 333 (604)
T ss_pred ceEEecCCCCChhHHHHHHHHHHHhc-CcEEeeccCcccccCChh-----h---hhcccc--cCchhhhccEEEEecCCc
Confidence 49999999999999999999999866 676667776655532211 1 111111 223333344556789999
Q ss_pred EEEcCCCCHHhHHHHHHHHhCCcEEEEeecCCChhhhhcCC----ccccccccccEEEe
Q 026207 108 IIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKNP----ILSDLIGGVDTVTL 162 (241)
Q Consensus 108 lilDE~~~~~d~~~~~~~~~~g~~vi~t~H~~~~~~~~~~p----~l~~l~~~~d~V~~ 162 (241)
-|.||.+.-.|.+........|+.++++.|+++.-+++++- ++--+-+-+|+|++
T Consensus 334 TIyDEmR~t~DF~vyaDmRLAGVGMVGVVHATrpIDAiQR~igRVELG~IPqIvDTVIf 392 (604)
T COG1855 334 TIYDEMRKTEDFQVYADLRLAGVGMVGVVHATRPIDAIQRFIGRVELGMIPQIVDTVIF 392 (604)
T ss_pred eehhhhhcccceEEeeeeecccCceEeEEecCChhHHHHHhhcceeecccccceeEEEE
Confidence 99999999988877777777799999999999988887763 22222222899999
|
|
| >TIGR02237 recomb_radB DNA repair and recombination protein RadB | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.1e-09 Score=88.95 Aligned_cols=165 Identities=15% Similarity=0.109 Sum_probs=89.8
Q ss_pred eccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCC------CccccccchhhcCCCCCcc---cHHH
Q 026207 25 IFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGD------IPHSAIGTARRMQVPEPSL---QHKV 95 (241)
Q Consensus 25 ~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~------~~~~~~~~~~~~~~~~~~~---~~~~ 95 (241)
...++.|+||||||||+++.+++...... +.+++|++. ++...... .+.....+.......+... ....
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~-g~~v~yi~~-e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 88 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQ-GKKVVYIDT-EGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQK 88 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEEC-CCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHHH
Confidence 34489999999999999999988776544 689999994 33211000 0000000000001111010 0112
Q ss_pred HHHHHHhcCCcEEEEcCCCCHHhHH----------H-------H-HHHHhCCcEEEEeecCCChhhh-hcCC----cccc
Q 026207 96 MIEAVENHMPEVIIVDEIGTEAEAH----------A-------C-RSIAERGVMLIGTAHGEWLENI-IKNP----ILSD 152 (241)
Q Consensus 96 ~~~~~l~~~p~vlilDE~~~~~d~~----------~-------~-~~~~~~g~~vi~t~H~~~~~~~-~~~p----~l~~ 152 (241)
....+..++|+++++|++.+..... . + ..+++.|+++++|.|..+..+. ...| .+.+
T Consensus 89 l~~~~~~~~~~lvVIDSis~l~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~~~~~~~~~~~~~~gg~~~~~ 168 (209)
T TIGR02237 89 TSKFIDRDSASLVVVDSFTALYRLELSDDRISRNRELARQLTLLLSLARKKNLAVVITNQVYTDVNNGTLRPLGGHLLEH 168 (209)
T ss_pred HHHHHhhcCccEEEEeCcHHHhHHHhCCccHHHHHHHHHHHHHHHHHHHHcCCEEEEEcccEEecCCCCCcCCCcchhhe
Confidence 2223334589999999997653210 1 1 1346789999999886532211 1122 3466
Q ss_pred ccccccEEEe-CChHHHHHHHHHhhhccCCCCCceEEEEEEcCce
Q 026207 153 LIGGVDTVTL-GDEEARARRCQKSILERKAPPTFYFLIEMRERHY 196 (241)
Q Consensus 153 l~~~~d~V~~-~~~~~~~~~~~~~~k~r~g~~~~~~~fe~~~~g~ 196 (241)
+ +|.++. ..... . +...-.|++..+......|+++++|+
T Consensus 169 ~---~d~vi~l~~~~~-~-r~~~i~k~~~~~~~~~~~f~It~~Gi 208 (209)
T TIGR02237 169 W---SKVILRLEKFRG-R-RLATLEKHRSRPEGESVYFRITDDGI 208 (209)
T ss_pred e---eeEEEEEEecCC-E-EEEEEEECCCCCCCCeEEEEEeCCcc
Confidence 6 888777 22221 1 22233344455555667899988875
|
This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236). |
| >PRK09361 radB DNA repair and recombination protein RadB; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.3e-09 Score=88.82 Aligned_cols=162 Identities=15% Similarity=0.153 Sum_probs=91.2
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCcccccc----c-hhhcCCCCC-cc-cHHHHHH-
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIG----T-ARRMQVPEP-SL-QHKVMIE- 98 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~----~-~~~~~~~~~-~~-~~~~~~~- 98 (241)
.+++|+||||+||||++.+++...... +.+++|++.. ...... ..+... . ..++.+... .. .+...+.
T Consensus 24 ~i~~i~G~~GsGKT~l~~~la~~~~~~-~~~v~yi~~e-~~~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 99 (225)
T PRK09361 24 TITQIYGPPGSGKTNICLQLAVEAAKN-GKKVIYIDTE-GLSPER--FKQIAGEDFEELLSNIIIFEPSSFEEQSEAIRK 99 (225)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEECC-CCCHHH--HHHHHhhChHhHhhCeEEEeCCCHHHHHHHHHH
Confidence 389999999999999999999877544 6899999843 221000 000000 0 000111110 10 1111222
Q ss_pred --HHHhcCCcEEEEcCCCCHHhH------------HH--------HHHHHhCCcEEEEeecCCChhhh-----hcCCccc
Q 026207 99 --AVENHMPEVIIVDEIGTEAEA------------HA--------CRSIAERGVMLIGTAHGEWLENI-----IKNPILS 151 (241)
Q Consensus 99 --~~l~~~p~vlilDE~~~~~d~------------~~--------~~~~~~~g~~vi~t~H~~~~~~~-----~~~p~l~ 151 (241)
.....+++++++|.+.+.... .. ...+++.|+++++|.|.....+. ..+..++
T Consensus 100 ~~~~~~~~~~lvVIDsi~al~~~~~~~~~~~~~~~~~l~~~l~~L~~~a~~~~v~vi~tnq~~~~~~~~~~~~~gg~~~~ 179 (225)
T PRK09361 100 AEKLAKENVGLIVLDSATSLYRLELEDEEDNSKLNRELGRQLTHLLKLARKHDLAVVITNQVYSDIDSDGLRPLGGHTLE 179 (225)
T ss_pred HHHHHHhcccEEEEeCcHHHhHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEccceecCCCCcccCCCcchhh
Confidence 122268999999998654321 01 11346789999999887642221 1111456
Q ss_pred cccccccEEEe-CChHHHHHHHHHhhhccCCCCCceEEEEEEcCce
Q 026207 152 DLIGGVDTVTL-GDEEARARRCQKSILERKAPPTFYFLIEMRERHY 196 (241)
Q Consensus 152 ~l~~~~d~V~~-~~~~~~~~~~~~~~k~r~g~~~~~~~fe~~~~g~ 196 (241)
++ +|.++. ....... |...-.|++..++.....|+++.+|+
T Consensus 180 ~~---~d~ii~l~~~~~~~-r~~~i~k~~~~~~~~~~~f~It~~Gi 221 (225)
T PRK09361 180 HW---SKTILRLEKFRNGK-RRATLEKHRSRPEGESAEFRITDRGI 221 (225)
T ss_pred hh---ccEEEEEEEccCCe-EEEEEEECCCCCCCCeEEEEEeCCcE
Confidence 66 888886 2211111 33334566666666778899999987
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.5e-09 Score=106.27 Aligned_cols=137 Identities=15% Similarity=0.198 Sum_probs=88.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCC--------C-CCCccccc---cch--------------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGG--------D-GDIPHSAI---GTA-------------- 81 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~--------~-~~~~~~~~---~~~-------------- 81 (241)
-|.|+|.+|||||||+.++-+...+..|. +.|| +.++.. . ..+|+... |..
T Consensus 1168 KVGIVGRTGaGKSSL~~aLFRl~e~~~G~--I~ID-gvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~e~sD~~ 1244 (1381)
T KOG0054|consen 1168 KVGIVGRTGAGKSSLILALFRLVEPAEGE--ILID-GVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFDEYSDDE 1244 (1381)
T ss_pred eEEEeCCCCCCHHHHHHHHHHhcCccCCe--EEEc-CeecccccHHHHHhcCeeeCCCCceecCccccccCcccccCHHH
Confidence 49999999999999999999999877555 5555 322210 0 12222100 000
Q ss_pred --------------------hhcCC------CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHH---H---HHHhCC
Q 026207 82 --------------------RRMQV------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC---R---SIAERG 129 (241)
Q Consensus 82 --------------------~~~~~------~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~---~---~~~~~g 129 (241)
....+ .|-|++|-..+++|+..+.+++++||.++..|.+.= . +.+-.+
T Consensus 1245 IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~d 1324 (1381)
T KOG0054|consen 1245 IWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKD 1324 (1381)
T ss_pred HHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcC
Confidence 00011 122457888899999999999999999999888421 1 223458
Q ss_pred cEEEEeecCCChhhhhcCCccccccccccEEEe-CChHHHHHHHHHhhhcc
Q 026207 130 VMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL-GDEEARARRCQKSILER 179 (241)
Q Consensus 130 ~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~-~~~~~~~~~~~~~~k~r 179 (241)
+||++..|..+ .+.+ +|+|+. .+|...--+.+..+.++
T Consensus 1325 cTVltIAHRl~--------TVmd----~DrVlVld~G~v~EfdsP~~Ll~~ 1363 (1381)
T KOG0054|consen 1325 CTVLTIAHRLN--------TVMD----SDRVLVLDAGRVVEFDSPAELLSD 1363 (1381)
T ss_pred CeEEEEeeccc--------hhhh----cCeEEEeeCCeEeecCChHHHHhC
Confidence 99999999886 5555 599998 44443222555555543
|
|
| >TIGR02239 recomb_RAD51 DNA repair protein RAD51 | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.5e-09 Score=94.20 Aligned_cols=164 Identities=13% Similarity=0.102 Sum_probs=93.8
Q ss_pred cEEEEEeCCCchHHHHHHHHHH--hccccCC---CeEEEEcCCccc-CCCC---------CCccccccchhhcCCCCCcc
Q 026207 27 DFFLSYFRPGVGKTTVMREIAR--VLSDEFQ---KRVVIVDTSNEI-GGDG---------DIPHSAIGTARRMQVPEPSL 91 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~--~l~~~~g---~~v~~i~~~~e~-~~~~---------~~~~~~~~~~~~~~~~~~~~ 91 (241)
.++.|.||||+|||||+.+++. .+++..| .+++|++ .++. .... ..+.............+..
T Consensus 97 ~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyId-tE~~f~~~Rl~~ia~~~~~~~~~~l~~i~~~~~~~~~- 174 (316)
T TIGR02239 97 SITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYID-TEGTFRPERLLAIAERYGLNPEDVLDNVAYARAYNTD- 174 (316)
T ss_pred eEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEE-CCCCCCHHHHHHHHHHcCCChHHhhccEEEEecCChH-
Confidence 3899999999999999999986 3333222 4789998 4432 1100 0000000000000001111
Q ss_pred cHHHHHH----HHHhcCCcEEEEcCCCCHHhHH-------------------HH-HHHHhCCcEEEEeecCCChhh----
Q 026207 92 QHKVMIE----AVENHMPEVIIVDEIGTEAEAH-------------------AC-RSIAERGVMLIGTAHGEWLEN---- 143 (241)
Q Consensus 92 ~~~~~~~----~~l~~~p~vlilDE~~~~~d~~-------------------~~-~~~~~~g~~vi~t~H~~~~~~---- 143 (241)
.+...+. .+...+++++|+|++.+..... .+ ..+...++++++|-|..+-.+
T Consensus 175 ~~~~~l~~~~~~~~~~~~~LvVIDSI~al~r~~~~~~~~~~~rq~~l~~~~~~L~~la~~~~vavv~tNqv~~~~~~~~~ 254 (316)
T TIGR02239 175 HQLQLLQQAAAMMSESRFALLIVDSATALYRTDFSGRGELSARQMHLARFLRSLQRLADEFGVAVVITNQVVAQVDGAGS 254 (316)
T ss_pred HHHHHHHHHHHhhccCCccEEEEECcHHHhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHhCCEEEEECceEEecCCccc
Confidence 1111222 2224578999999998663220 01 134567999999999874221
Q ss_pred hhc----CC----ccccccccccEEEe-CChHHHHHHHHHhhhccCCCCCceEEEEEEcCceE
Q 026207 144 IIK----NP----ILSDLIGGVDTVTL-GDEEARARRCQKSILERKAPPTFYFLIEMRERHYW 197 (241)
Q Consensus 144 ~~~----~p----~l~~l~~~~d~V~~-~~~~~~~~~~~~~~k~r~g~~~~~~~fe~~~~g~~ 197 (241)
.++ .| .++|. ++..++ ....... |.++..|+++.|..+ ..|+|.++|+.
T Consensus 255 ~~~g~~~~p~gG~~~~h~---~~~ri~l~k~~~~~-R~~~v~ksp~~p~~~-~~f~i~~~Gi~ 312 (316)
T TIGR02239 255 MFAGDPKKPIGGNIMAHA---STTRLSLRKGRGEQ-RICKIYDSPCLPESE-AMFAIYEDGIG 312 (316)
T ss_pred cccCCCCcCCchHHHHhh---ccEEEEEEecCCCe-EEEEEEECCCCCCeE-EEEEEeCCcee
Confidence 121 12 45666 777776 2211122 788889999988866 89999999983
|
This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012). |
| >PRK09302 circadian clock protein KaiC; Reviewed | Back alignment and domain information |
|---|
Probab=98.89 E-value=7.6e-09 Score=96.88 Aligned_cols=186 Identities=15% Similarity=0.046 Sum_probs=103.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC--------CCCcccc--ccchhhcCCC--------CC
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD--------GDIPHSA--IGTARRMQVP--------EP 89 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~--------~~~~~~~--~~~~~~~~~~--------~~ 89 (241)
+++|.|+||+|||||..+++.......|.+++|++ .+|.... +...... .+........ ..
T Consensus 33 ~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis-~ee~~~~i~~~~~~~g~d~~~~~~~g~l~~~~~~~~~~~~~~~~ 111 (509)
T PRK09302 33 PTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVT-FEESPEDIIRNVASFGWDLQKLIDEGKLFILDASPDPSEQEEAG 111 (509)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEE-ccCCHHHHHHHHHHcCCCHHHHhhCCeEEEEecCcccccccccc
Confidence 79999999999999999887654433357888887 4332210 0000000 0000000000 00
Q ss_pred cccHH----HHHHHHHhcCCcEEEEcCCCCHH---hH-H--------HHHHHHhCCcEEEEeecCCChhhhhcCC-cccc
Q 026207 90 SLQHK----VMIEAVENHMPEVIIVDEIGTEA---EA-H--------ACRSIAERGVMLIGTAHGEWLENIIKNP-ILSD 152 (241)
Q Consensus 90 ~~~~~----~~~~~~l~~~p~vlilDE~~~~~---d~-~--------~~~~~~~~g~~vi~t~H~~~~~~~~~~p-~l~~ 152 (241)
..... .+...+...+|+.++||.+++.. +. . ....+++.|++++++.|.....+.+..+ ..+.
T Consensus 112 ~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~~~d~~~~~r~~l~~L~~~Lk~~g~TvLlt~~~~~~~~~~~~~~~~~~ 191 (509)
T PRK09302 112 EYDLEALFIRIEYAIDKIGAKRVVLDSIEALFSGFSNEAVVRRELRRLFAWLKQKGVTAVITGERGDEYGPLTRYGVEEF 191 (509)
T ss_pred cccHHHHHHHHHHHHHhhCCCEEEECCHHHHHhhccCHHHHHHHHHHHHHHHHhCCCEEEEEECCccCcCCccccCceEE
Confidence 11122 23344556799999999987642 11 1 1123567799999999976422323333 2356
Q ss_pred ccccccEEEe--C-ChHHHHHHHHHhhhccCCCCC-ceEEEEEEcCceEEeec---------------c-hHHHHHHhcC
Q 026207 153 LIGGVDTVTL--G-DEEARARRCQKSILERKAPPT-FYFLIEMRERHYWVTHK---------------T-EKSVDMLLRG 212 (241)
Q Consensus 153 l~~~~d~V~~--~-~~~~~~~~~~~~~k~r~g~~~-~~~~fe~~~~g~~~~~~---------------~-~~~~~~~l~G 212 (241)
+ ||.|+. . .......|.++..|.|-.+.. -...|++++.|+.+... . -..+|.++.|
T Consensus 192 l---aDgVI~L~~~~~~~~~~R~l~I~K~Rg~~~~~~~~~f~I~~~Gi~v~p~~~~~~~~~~~~~~~~tGi~~lD~~l~G 268 (509)
T PRK09302 192 V---SDCVIILRNRLEGEKRTRTLRILKYRGTTHGKNEYPFTITEDGISVLPLTAMRLTQRSSNERISSGVPDLDEMLGG 268 (509)
T ss_pred E---eeEEEEEeEEccCCeEEEEEEEEECCCCCcCCccEEEEECCCcEEEEeccccccccccccccccCCcHHHHHhhcC
Confidence 7 899886 1 111212367777887733322 24668888888732211 0 2457888888
Q ss_pred CCccc
Q 026207 213 KTPLV 217 (241)
Q Consensus 213 ~~~~~ 217 (241)
+-|.-
T Consensus 269 G~~~g 273 (509)
T PRK09302 269 GFFRG 273 (509)
T ss_pred CCCCC
Confidence 87753
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.4e-09 Score=103.66 Aligned_cols=44 Identities=23% Similarity=0.369 Sum_probs=35.9
Q ss_pred HhcCC-cEEEEcCCCCHHhHHHH-------HHHHhCCcEEEEeecCCChhhhh
Q 026207 101 ENHMP-EVIIVDEIGTEAEAHAC-------RSIAERGVMLIGTAHGEWLENII 145 (241)
Q Consensus 101 l~~~p-~vlilDE~~~~~d~~~~-------~~~~~~g~~vi~t~H~~~~~~~~ 145 (241)
+..+| .+|++|||++++|++++ +..+++|.+|+.|+|..+ .+.+
T Consensus 944 LvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS-~~if 995 (1391)
T KOG0065|consen 944 LVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPS-IDIF 995 (1391)
T ss_pred EecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCc-HHHH
Confidence 34589 89999999999999654 356779999999999998 4444
|
|
| >cd03284 ABC_MutS1 MutS1 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.7e-08 Score=84.39 Aligned_cols=105 Identities=15% Similarity=0.142 Sum_probs=56.7
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcccc-CCCeEEEEcCCcccCCCCCCccccccchhhcCC---CCCcccHH----HHHH
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDE-FQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQV---PEPSLQHK----VMIE 98 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~-~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~---~~~~~~~~----~~~~ 98 (241)
.+++|+||||+||||+++.++...-.. .| .++. ..+... .... +.. .++.. .+.+.... ..++
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~~~~l~~~g---~~vp-~~~~~i-~~~~-~i~---~~~~~~~~ls~g~s~f~~e~~~l~ 101 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVALIALLAQIG---SFVP-ASKAEI-GVVD-RIF---TRIGASDDLAGGRSTFMVEMVETA 101 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHhccC---Ceec-ccccee-ccee-eEe---ccCCchhhhccCcchHHHHHHHHH
Confidence 589999999999999999997533111 11 1111 111000 0000 000 01111 11222221 1233
Q ss_pred HHH--hcCCcEEEEcCC---CCHHhHHHH-----HHHHhC-CcEEEEeecCCC
Q 026207 99 AVE--NHMPEVIIVDEI---GTEAEAHAC-----RSIAER-GVMLIGTAHGEW 140 (241)
Q Consensus 99 ~~l--~~~p~vlilDE~---~~~~d~~~~-----~~~~~~-g~~vi~t~H~~~ 140 (241)
.++ ..+|+++++||| ++.+|.... ....+. +.+++.++|...
T Consensus 102 ~~l~~~~~~~llllDEp~~gt~~lD~~~~~~~il~~l~~~~~~~vi~~TH~~~ 154 (216)
T cd03284 102 NILNNATERSLVLLDEIGRGTSTYDGLSIAWAIVEYLHEKIGAKTLFATHYHE 154 (216)
T ss_pred HHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhccCCcEEEEeCcHH
Confidence 333 368999999999 777776432 123344 788999999865
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam |
| >TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.3e-08 Score=85.34 Aligned_cols=165 Identities=14% Similarity=0.080 Sum_probs=87.5
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC--------CCCccccccchhhcCCC-----------
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD--------GDIPHSAIGTARRMQVP----------- 87 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~--------~~~~~~~~~~~~~~~~~----------- 87 (241)
.+++|.||||+||||++.+++...... +.+++|++ .++.... +...+..... .++.+.
T Consensus 21 ~~~~i~G~~G~GKT~l~~~~~~~~~~~-g~~~~~is-~e~~~~~i~~~~~~~g~~~~~~~~~-~~l~i~d~~~~~~~~~~ 97 (229)
T TIGR03881 21 FFVAVTGEPGTGKTIFCLHFAYKGLRD-GDPVIYVT-TEESRESIIRQAAQFGMDFEKAIEE-GKLVIIDALMKEKEDEW 97 (229)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHhc-CCeEEEEE-ccCCHHHHHHHHHHhCCCHHHHhhc-CCEEEEEcccccccccc
Confidence 389999999999999999877543332 57888887 3332110 0000000000 000000
Q ss_pred C-CcccHHHHHHHH---Hh---cCCcEEEEcCCCCHH--hH---H----HH-HHHHhCCcEEEEeecCCChhhhhcCCcc
Q 026207 88 E-PSLQHKVMIEAV---EN---HMPEVIIVDEIGTEA--EA---H----AC-RSIAERGVMLIGTAHGEWLENIIKNPIL 150 (241)
Q Consensus 88 ~-~~~~~~~~~~~~---l~---~~p~vlilDE~~~~~--d~---~----~~-~~~~~~g~~vi~t~H~~~~~~~~~~p~l 150 (241)
. ...........+ .. .+|+++++|.++... ++ . .+ ..+++.|++++.+.|..........+.+
T Consensus 98 ~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~~~~~tvil~~~~~~~~~~~~~~~~ 177 (229)
T TIGR03881 98 SLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSAFWLDKPAMARKYSYYLKRVLNRWNFTILLTSQYAITTSQAFGFGI 177 (229)
T ss_pred ccccCCHHHHHHHHHHHHHhhccCceEEEecCchhhhccChHHHHHHHHHHHHHHHhCCCEEEEEecccccCCCCcccce
Confidence 0 122333332222 21 368899999987652 11 1 11 1346779999999996542211111357
Q ss_pred ccccccccEEEe---CChHHHHHHHHHhhhccCCC-CCceEEEEEEc-CceE
Q 026207 151 SDLIGGVDTVTL---GDEEARARRCQKSILERKAP-PTFYFLIEMRE-RHYW 197 (241)
Q Consensus 151 ~~l~~~~d~V~~---~~~~~~~~~~~~~~k~r~g~-~~~~~~fe~~~-~g~~ 197 (241)
+++ ||.|+. -......+|.++..|.|..+ ..-...|++++ +|+.
T Consensus 178 ~~l---~D~vI~L~~~~~~~~~~R~i~i~K~R~~~~~~~~~~~~I~~~~Gi~ 226 (229)
T TIGR03881 178 EHV---ADGIIRFRKVVVDGELRRYLIVEKMRQTNHDKRAWEIDIVPGKGLV 226 (229)
T ss_pred EEE---EeEEEEEEEeccCCcEEEEEEEEeccCCCCCCceeEEEEcCCCceE
Confidence 788 999996 11112223566666766332 22345577763 6763
|
Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain. |
| >TIGR02236 recomb_radA DNA repair and recombination protein RadA | Back alignment and domain information |
|---|
Probab=98.87 E-value=7.3e-09 Score=91.02 Aligned_cols=165 Identities=15% Similarity=0.115 Sum_probs=92.2
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccc--c---CCCeEEEEcCCcccCCCCCC-ccccccc-----hhhcCC---CCCccc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSD--E---FQKRVVIVDTSNEIGGDGDI-PHSAIGT-----ARRMQV---PEPSLQ 92 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~--~---~g~~v~~i~~~~e~~~~~~~-~~~~~~~-----~~~~~~---~~~~~~ 92 (241)
.++.|+|||||||||++.+++..... . .+.+++|++....+...... .....+. ..++.+ .+....
T Consensus 96 ~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~~~~gl~~~~~~~~i~i~~~~~~~~~ 175 (310)
T TIGR02236 96 AITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMAEARGLDPDEVLKNIYVARAYNSNHQ 175 (310)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhceEEEecCCHHHH
Confidence 37899999999999999999876431 1 12489999943322111000 0000000 001111 111110
Q ss_pred ---HHHHHHHHHhc--CCcEEEEcCCCCHHhHH--------------------HHHHHHhCCcEEEEeecCCChhh----
Q 026207 93 ---HKVMIEAVENH--MPEVIIVDEIGTEAEAH--------------------ACRSIAERGVMLIGTAHGEWLEN---- 143 (241)
Q Consensus 93 ---~~~~~~~~l~~--~p~vlilDE~~~~~d~~--------------------~~~~~~~~g~~vi~t~H~~~~~~---- 143 (241)
...+...+... +++++|+|++.+....+ ....+.+.++++++|.|..+-.+
T Consensus 176 ~~lld~l~~~i~~~~~~~~lVVIDSisa~~r~e~~~~~~~~~r~~~l~~~~~~L~~~a~~~~~~v~~tnqv~~~~~~~~~ 255 (310)
T TIGR02236 176 MLLVEKAEDLIKELNNPVKLLIVDSLTSHFRAEYVGRGALAERQQKLNKHLHDLLRLADLYNAAVVVTNQVMARPDAFFG 255 (310)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEecchHhhhHhhcCchhHHHHHHHHHHHHHHHHHHHHHhCcEEEEeceeeecCccccC
Confidence 11122222233 37899999987653221 01134667999999999765222
Q ss_pred ---hhcCC-ccccccccccEEEe-CChHHHHHHHHHhhhccCCCCCceEEEEEEcCce
Q 026207 144 ---IIKNP-ILSDLIGGVDTVTL-GDEEARARRCQKSILERKAPPTFYFLIEMRERHY 196 (241)
Q Consensus 144 ---~~~~p-~l~~l~~~~d~V~~-~~~~~~~~~~~~~~k~r~g~~~~~~~fe~~~~g~ 196 (241)
..+.+ .+.|. ++..+. ....... |.++..|+++.++... .|+|+..|+
T Consensus 256 ~~~~~~~G~~~~h~---~~~rl~l~~~~~~~-R~~~~~k~~~~~~~~~-~f~i~~~Gi 308 (310)
T TIGR02236 256 DPTRPIGGHILGHA---ATFRVYLRKGKGDK-RIARLVDSPHLPEGEA-VFRITEKGI 308 (310)
T ss_pred ccccCCcchhhhhh---eeEEEEEEecCCCe-EEEEEEECCCCCCeeE-EEEEeCCCc
Confidence 11112 45666 777776 3222222 7788889999888765 799999886
|
This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein. |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.6e-09 Score=93.76 Aligned_cols=137 Identities=18% Similarity=0.244 Sum_probs=89.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC---------CCCcccccc-------------------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD---------GDIPHSAIG------------------- 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~---------~~~~~~~~~------------------- 79 (241)
.+.+.||.|+||||+++.+-+.+..+.|. +.++ +.++... +.+|+....
T Consensus 291 tvAiVg~SG~gKsTI~rllfRFyD~~sG~--I~id-~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~e 367 (497)
T COG5265 291 TVAIVGESGAGKSTILRLLFRFYDVNSGS--ITID-GQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAE 367 (497)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHhCCcCce--EEEc-chhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHH
Confidence 59999999999999999999999877554 6665 3332210 222221100
Q ss_pred ---------------------ch----hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH------HHHhC
Q 026207 80 ---------------------TA----RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR------SIAER 128 (241)
Q Consensus 80 ---------------------~~----~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~------~~~~~ 128 (241)
+. .+--..+++.+|++++++.+..+|.++++||.++.+|-..-. .....
T Consensus 368 ev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~ 447 (497)
T COG5265 368 EVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSA 447 (497)
T ss_pred HHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhC
Confidence 00 011124567799999999999999999999999999884222 22346
Q ss_pred CcEEEEeecCCChhhhhcCCccccccccccEEEe-CChHHHHHHHHHhhhcc
Q 026207 129 GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL-GDEEARARRCQKSILER 179 (241)
Q Consensus 129 g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~-~~~~~~~~~~~~~~k~r 179 (241)
|+|-+...|..+ .+.+ +|.|+. .++....++.-.++..+
T Consensus 448 ~rttlviahrls--------ti~~----adeiivl~~g~i~erg~h~~ll~~ 487 (497)
T COG5265 448 GRTTLVIAHRLS--------TIID----ADEIIVLDNGRIVERGTHEELLAA 487 (497)
T ss_pred CCeEEEEeehhh--------hccC----CceEEEeeCCEEEecCcHHHHHHc
Confidence 888777779886 3333 588777 44443333444555443
|
|
| >cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.4e-09 Score=87.66 Aligned_cols=107 Identities=14% Similarity=0.115 Sum_probs=60.1
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccc-cCCC----eEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHH
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSD-EFQK----RVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVE 101 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~-~~g~----~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 101 (241)
.+++|+||||+||||++++++-..-- ..|. +-..+..-.++.. ...... ......|..+.....++.++
T Consensus 31 ~~~~l~G~n~~GKstll~~i~~~~~la~~g~~vpa~~~~~~~~~~il~-----~~~l~d-~~~~~lS~~~~e~~~~a~il 104 (222)
T cd03285 31 RFLIITGPNMGGKSTYIRQIGVIVLMAQIGCFVPCDSADIPIVDCILA-----RVGASD-SQLKGVSTFMAEMLETAAIL 104 (222)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHHHhCCCcCcccEEEeccceeEe-----eecccc-chhcCcChHHHHHHHHHHHH
Confidence 38999999999999999997743210 0110 0011110001100 000000 01122344455555565555
Q ss_pred --hcCCcEEEEcCC---CCHHhHHHHH-----HHH-hCCcEEEEeecCC
Q 026207 102 --NHMPEVIIVDEI---GTEAEAHACR-----SIA-ERGVMLIGTAHGE 139 (241)
Q Consensus 102 --~~~p~vlilDE~---~~~~d~~~~~-----~~~-~~g~~vi~t~H~~ 139 (241)
..+|+++++||| ++.+|..... ... +.|.+++.++|..
T Consensus 105 ~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~~~~~~vlisTH~~ 153 (222)
T cd03285 105 KSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQIKCFCLFATHFH 153 (222)
T ss_pred HhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHhcCCCeEEEEechH
Confidence 578999999999 7778885433 222 3478899999953
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.6e-09 Score=89.54 Aligned_cols=169 Identities=19% Similarity=0.135 Sum_probs=91.9
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC--------CCCccc--cccchhhcCCCCC-----c
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD--------GDIPHS--AIGTARRMQVPEP-----S 90 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~--------~~~~~~--~~~~~~~~~~~~~-----~ 90 (241)
..+++|.||||+|||+|..+++..-....|.+++|+. .++.... +..... ..+....+...+. .
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs-~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~~~~ 97 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVS-FEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIGWSP 97 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEE-SSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST-TS
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEE-ecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEecccccccccc
Confidence 3489999999999999999877544322257899997 3332110 000000 0000000111111 1
Q ss_pred c----cHHHHHHHHHhcCCcEEEEcCCCCH---HhH--------HHHHHHHhCCcEEEEeecCCChhhhhcCCcccc-cc
Q 026207 91 L----QHKVMIEAVENHMPEVIIVDEIGTE---AEA--------HACRSIAERGVMLIGTAHGEWLENIIKNPILSD-LI 154 (241)
Q Consensus 91 ~----~~~~~~~~~l~~~p~vlilDE~~~~---~d~--------~~~~~~~~~g~~vi~t~H~~~~~~~~~~p~l~~-l~ 154 (241)
. -...+...+...+|+++++|.+... .++ .....+++.|++++.|.|.....+......+++ +
T Consensus 98 ~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~~~t~llt~~~~~~~~~~~~~~i~~~l- 176 (226)
T PF06745_consen 98 NDLEELLSKIREAIEELKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSRGVTTLLTSEMPSGSEDDGTFGIEHYL- 176 (226)
T ss_dssp CCHHHHHHHHHHHHHHHTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHTTEEEEEEEEESSSSSSSSSTSHHHHH-
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHCCCEEEEEEccccCcccccccchhhhc-
Confidence 1 1233334455678999999997655 111 112245678999888888543122222235666 7
Q ss_pred ccccEEEe---CChHHHHHHHHHhhhccCCC-CCceEEEEEEcCceEE
Q 026207 155 GGVDTVTL---GDEEARARRCQKSILERKAP-PTFYFLIEMRERHYWV 198 (241)
Q Consensus 155 ~~~d~V~~---~~~~~~~~~~~~~~k~r~g~-~~~~~~fe~~~~g~~~ 198 (241)
||.|+. -+......|.++..|.|..+ ..-...|++++.|+-+
T Consensus 177 --~D~vI~L~~~~~~~~~~R~l~I~K~Rg~~~~~~~~~f~I~~~Gi~i 222 (226)
T PF06745_consen 177 --ADGVIELRYEEEGGRIRRRLRIVKMRGSRHSTGIHPFEITPGGIEI 222 (226)
T ss_dssp --SSEEEEEEEEEETTEEEEEEEEEEETTS----BEEEEEEETTEEEE
T ss_pred --ccEEEEEEEEeeCCEEEEEEEEEEcCCCCCCCcEEEEEEECCeEEE
Confidence 899987 11122233777888887543 3356778888888743
|
More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C .... |
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.4e-08 Score=80.35 Aligned_cols=111 Identities=26% Similarity=0.239 Sum_probs=57.6
Q ss_pred EEEEeCCCchHHHHHHHHHHhccccCCCeEE-EEcCC-cccCCC-CCCccc-c---ccchhhcCC------------CCC
Q 026207 29 FLSYFRPGVGKTTVMREIARVLSDEFQKRVV-IVDTS-NEIGGD-GDIPHS-A---IGTARRMQV------------PEP 89 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~-~i~~~-~e~~~~-~~~~~~-~---~~~~~~~~~------------~~~ 89 (241)
++|+|+||+|||||++.+++.+.+. |.++. ++.+. .+.... ...... . .....+... .+.
T Consensus 3 i~ltG~~G~GKTTll~~i~~~l~~~-G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lsg 81 (174)
T PRK13695 3 IGITGPPGVGKTTLVLKIAELLKEE-GYKVGGFYTEEVREGGKRIGFKIIDLDTGEEGILARVGFPSRPRVGKYVVNLED 81 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEEcHHHHhcCCccceEEEEcCCCCeEEccccCCCCCCceeeEEEehHH
Confidence 7899999999999999998877542 44533 33211 000000 000000 0 000001110 000
Q ss_pred cccHHHHHHHHHhcCCcEEEEcCCCCH--HhH---HHHHHHHhCCcEEEEeecCCC
Q 026207 90 SLQHKVMIEAVENHMPEVIIVDEIGTE--AEA---HACRSIAERGVMLIGTAHGEW 140 (241)
Q Consensus 90 ~~~~~~~~~~~l~~~p~vlilDE~~~~--~d~---~~~~~~~~~g~~vi~t~H~~~ 140 (241)
.......+......+|+++++||++.. .+. ..+..+.+.|.++++++|...
T Consensus 82 le~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~~~~~~~i~v~h~~~ 137 (174)
T PRK13695 82 LERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVLDSEKPVIATLHRRS 137 (174)
T ss_pred HHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHHhCCCeEEEEECchh
Confidence 011111112222348999999997643 232 344456678999999999754
|
|
| >TIGR01069 mutS2 MutS2 family protein | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.8e-09 Score=102.96 Aligned_cols=110 Identities=15% Similarity=0.159 Sum_probs=61.5
Q ss_pred cEEEEEeCCCchHHHHHHHHHHh-ccccCCCeEEEEcCC--cccCCCCCCccccccc----hhhcCCCCCcccHHHHHHH
Q 026207 27 DFFLSYFRPGVGKTTVMREIARV-LSDEFQKRVVIVDTS--NEIGGDGDIPHSAIGT----ARRMQVPEPSLQHKVMIEA 99 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~-l~~~~g~~v~~i~~~--~e~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 99 (241)
..++|+||||+||||+++.+++. +.+..|. ++... ..+..-... ...++. ...+..++.++.....+..
T Consensus 323 ~~liItGpNg~GKSTlLK~i~~~~l~aq~G~---~Vpa~~~~~~~~~d~i-~~~i~~~~si~~~LStfS~~m~~~~~il~ 398 (771)
T TIGR01069 323 RVLAITGPNTGGKTVTLKTLGLLALMFQSGI---PIPANEHSEIPYFEEI-FADIGDEQSIEQNLSTFSGHMKNISAILS 398 (771)
T ss_pred eEEEEECCCCCCchHHHHHHHHHHHHHHhCC---CccCCccccccchhhe-eeecChHhHHhhhhhHHHHHHHHHHHHHH
Confidence 48999999999999999999987 3333231 22111 111000000 000000 0112223333443322222
Q ss_pred HHhcCCcEEEEcCCCCHHhHHHH--------HHHHhCCcEEEEeecCCCh
Q 026207 100 VENHMPEVIIVDEIGTEAEAHAC--------RSIAERGVMLIGTAHGEWL 141 (241)
Q Consensus 100 ~l~~~p~vlilDE~~~~~d~~~~--------~~~~~~g~~vi~t~H~~~~ 141 (241)
. ..+|.++++|||+++.|+... ....+.|+++|+|+|...+
T Consensus 399 ~-~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL 447 (771)
T TIGR01069 399 K-TTENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKEL 447 (771)
T ss_pred h-cCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHH
Confidence 1 148999999999999887322 1334568899999998764
|
Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. |
| >cd01394 radB RadB | Back alignment and domain information |
|---|
Probab=98.84 E-value=9.2e-09 Score=85.66 Aligned_cols=163 Identities=17% Similarity=0.131 Sum_probs=89.8
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccc-----hhhcCCCCC-c-ccHHH---
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGT-----ARRMQVPEP-S-LQHKV--- 95 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~-----~~~~~~~~~-~-~~~~~--- 95 (241)
..+++|+|+||+||||++.+++...... +.+++|++...... .. ..+.... ...+.+... . ..+..
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~~~-g~~v~yi~~e~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETAGQ-GKKVAYIDTEGLSS-ER--FRQIAGDRPERAASSIIVFEPMDFNEQGRAIQ 94 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEECCCCCH-HH--HHHHHhHChHhhhcCEEEEeCCCHHHHHHHHH
Confidence 3389999999999999999999887544 68999997322211 00 0000000 001111111 1 11111
Q ss_pred HHHHHHhcCCcEEEEcCCCCHHhH------------HHH--------HHHHhCCcEEEEeecCCChhh-hhcCC----cc
Q 026207 96 MIEAVENHMPEVIIVDEIGTEAEA------------HAC--------RSIAERGVMLIGTAHGEWLEN-IIKNP----IL 150 (241)
Q Consensus 96 ~~~~~l~~~p~vlilDE~~~~~d~------------~~~--------~~~~~~g~~vi~t~H~~~~~~-~~~~p----~l 150 (241)
.+......+++++++|.+.+.... ..+ ..+++.++++++|.|.....+ ....| .+
T Consensus 95 ~~~~~~~~~~~lvvIDsi~~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~t~q~~~~~~~~~~~p~~g~~~ 174 (218)
T cd01394 95 ETETFADEKVDLVVVDSATALYRLELGDDDTTIKNYRELAKQLTFLLWLARKHDVAVVITNQVYSDVGSGSVRPLGGHTL 174 (218)
T ss_pred HHHHHHhcCCcEEEEechHHhhhHHhcCccchHHHHHHHHHHHHHHHHHHHHhCCEEEEecCCEEcCCCCcccccCCcch
Confidence 122233446999999998865211 011 134678999999999763222 11123 45
Q ss_pred ccccccccEEEe-CChHHHHHHHHHhhhccCCCCCceEEEEEEcCce
Q 026207 151 SDLIGGVDTVTL-GDEEARARRCQKSILERKAPPTFYFLIEMRERHY 196 (241)
Q Consensus 151 ~~l~~~~d~V~~-~~~~~~~~~~~~~~k~r~g~~~~~~~fe~~~~g~ 196 (241)
+++ +|.++. .......++.. --|++..+......|+++++|+
T Consensus 175 ~~~---~d~~i~l~~~~~~~r~~~-~~~~~~~~~~~~~~f~It~~Gi 217 (218)
T cd01394 175 EHW---SKVILRLEKLRVGTRRAV-LEKHRFRPEGSSVYFRITDKGI 217 (218)
T ss_pred hcc---eeEEEEEEEcCCCeEEEE-EeeCCCCCCCceEEEEEeCCcc
Confidence 677 898887 22111111211 1244455556667899998885
|
The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear. |
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.5e-08 Score=83.87 Aligned_cols=114 Identities=12% Similarity=0.120 Sum_probs=60.3
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcccc-CCCeEEEEcC-CcccCCCCCCccccccc----hhhcCCCCCcccHHHHHHHH
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDE-FQKRVVIVDT-SNEIGGDGDIPHSAIGT----ARRMQVPEPSLQHKVMIEAV 100 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~-~g~~v~~i~~-~~e~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 100 (241)
.+++|+||||+||||+++++++..--. .|. ++.. ..++.....+ ...++. ......++.++++. .....
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~~~~la~~G~---~vpa~~~~l~~~d~I-~~~~~~~d~~~~~~S~fs~e~~~~-~~il~ 104 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIALLAIMAQIGC---FVPAEYATLPIFNRL-LSRLSNDDSMERNLSTFASEMSET-AYILD 104 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHHHcCC---CcchhhcCccChhhe-eEecCCccccchhhhHHHHHHHHH-HHHHH
Confidence 589999999999999999998654221 111 1110 0011000000 000000 00111122233322 22233
Q ss_pred HhcCCcEEEEcCCCCHHhHHH--------HHHHHhCCcEEEEeecCCChhhhh
Q 026207 101 ENHMPEVIIVDEIGTEAEAHA--------CRSIAERGVMLIGTAHGEWLENII 145 (241)
Q Consensus 101 l~~~p~vlilDE~~~~~d~~~--------~~~~~~~g~~vi~t~H~~~~~~~~ 145 (241)
...+|+++++|||+.+.++.. +....+.|.+++.++|.....+..
T Consensus 105 ~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~~l~~~~ 157 (204)
T cd03282 105 YADGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFATHFRDIAAIL 157 (204)
T ss_pred hcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHh
Confidence 457899999999987765521 223445688999999988744433
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PLN03186 DNA repair protein RAD51 homolog; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.7e-08 Score=89.62 Aligned_cols=164 Identities=13% Similarity=0.052 Sum_probs=92.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHh--cccc---CCCeEEEEcCCcccCCCC---------CCccccccchhhcCCCCCcccH
Q 026207 28 FFLSYFRPGVGKTTVMREIARV--LSDE---FQKRVVIVDTSNEIGGDG---------DIPHSAIGTARRMQVPEPSLQH 93 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~--l~~~---~g~~v~~i~~~~e~~~~~---------~~~~~~~~~~~~~~~~~~~~~~ 93 (241)
++.|+|+||+|||+|+..++-. ++.. .+.+++|++....+.... ..+...+.........+. ..+
T Consensus 125 i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~~~~~~~~~l~~i~~~~~~~~-e~~ 203 (342)
T PLN03186 125 ITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERFGLNGADVLENVAYARAYNT-DHQ 203 (342)
T ss_pred EEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHHcCCChhhhccceEEEecCCH-HHH
Confidence 7999999999999999988843 2221 124899999444322110 000000000000000111 111
Q ss_pred HHHHH----HHHhcCCcEEEEcCCCCHHhHH------------HH--------HHHHhCCcEEEEeecCCChhh---hhc
Q 026207 94 KVMIE----AVENHMPEVIIVDEIGTEAEAH------------AC--------RSIAERGVMLIGTAHGEWLEN---IIK 146 (241)
Q Consensus 94 ~~~~~----~~l~~~p~vlilDE~~~~~d~~------------~~--------~~~~~~g~~vi~t~H~~~~~~---~~~ 146 (241)
...+. .+...++++||+|++.+..... .+ ..+...|+++++|-|..+-.+ .++
T Consensus 204 ~~ll~~~~~~~~~~~~~LIVIDSI~alfr~~~~~~g~l~~r~~~L~~~l~~L~~lA~~~~vaVviTNqv~~~~~~~~~~~ 283 (342)
T PLN03186 204 SELLLEAASMMAETRFALMIVDSATALYRTEFSGRGELSARQMHLGKFLRSLQRLADEFGVAVVITNQVVAQVDGSAFFA 283 (342)
T ss_pred HHHHHHHHHHhhccCCCEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEcCEEEccCCccccC
Confidence 11221 2234579999999998753320 00 123457999999999853222 233
Q ss_pred CCc--------cccccccccEEEe-CChHHHHHHHHHhhhccCCCCCceEEEEEEcCceE
Q 026207 147 NPI--------LSDLIGGVDTVTL-GDEEARARRCQKSILERKAPPTFYFLIEMRERHYW 197 (241)
Q Consensus 147 ~p~--------l~~l~~~~d~V~~-~~~~~~~~~~~~~~k~r~g~~~~~~~fe~~~~g~~ 197 (241)
+|. +.|. ++..++ .++.... |.++..|+++.|... ..|+|++.|+.
T Consensus 284 ~~~~~P~gG~~~~h~---~~tRl~L~k~~~~~-R~~~v~ksp~~p~~e-~~F~I~~~Gi~ 338 (342)
T PLN03186 284 GPQLKPIGGNIMAHA---STTRLALRKGRGEN-RICKVISSPCLPEAE-ARFSISSEGVT 338 (342)
T ss_pred CCccccchhHHHHhh---ccEEEEEEecCCCe-EEEEEEECCCCCCeE-EEEEEECCcee
Confidence 332 3444 777776 3222222 778888999888866 89999999973
|
|
| >PLN03187 meiotic recombination protein DMC1 homolog; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.5e-08 Score=88.65 Aligned_cols=167 Identities=13% Similarity=0.067 Sum_probs=88.8
Q ss_pred EEEEEeCCCchHHHHHHHHHH--hcccc---CCCeEEEEcCCcccCCC---------CCCccccccchhhcCCCCCcccH
Q 026207 28 FFLSYFRPGVGKTTVMREIAR--VLSDE---FQKRVVIVDTSNEIGGD---------GDIPHSAIGTARRMQVPEPSLQH 93 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~--~l~~~---~g~~v~~i~~~~e~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 93 (241)
++.|+||||||||+|+.+++- .++.. .+.+++|++....+... +..+...+.+.......+.....
T Consensus 128 ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~d~~~~l~~I~~~~~~~~e~~~ 207 (344)
T PLN03187 128 ITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGMDADAVLDNIIYARAYTYEHQY 207 (344)
T ss_pred EEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHcCCChhhhcCeEEEecCCCHHHHH
Confidence 799999999999999998874 33221 23689999944322211 00000000000001111111111
Q ss_pred HH---HHHHHHhcCCcEEEEcCCCCHHhH-------------------H-HHHHHHhCCcEEEEeecCCChhhh---hc-
Q 026207 94 KV---MIEAVENHMPEVIIVDEIGTEAEA-------------------H-ACRSIAERGVMLIGTAHGEWLENI---IK- 146 (241)
Q Consensus 94 ~~---~~~~~l~~~p~vlilDE~~~~~d~-------------------~-~~~~~~~~g~~vi~t~H~~~~~~~---~~- 146 (241)
.. +...+...++++||+|++.+.... . ....+...|+++++|-|..+-.+. ..
T Consensus 208 ~~l~~l~~~i~~~~~~LvVIDSital~r~~~~~rg~l~~rq~~L~~~~~~L~~lA~~~~vavvvTNqv~~~~~~~~~~~~ 287 (344)
T PLN03187 208 NLLLGLAAKMAEEPFRLLIVDSVIALFRVDFTGRGELAERQQKLAQMLSRLTKIAEEFNVAVYMTNQVIADPGGGMFISD 287 (344)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCcHHhhhccccCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEecEEEcCCcccccCC
Confidence 11 111233467999999998765321 0 111346689999999987642221 01
Q ss_pred --CCccccccc-cccEEEe-CChHHHHHHHHHhhhccCCCCCceEEEEEEcCce
Q 026207 147 --NPILSDLIG-GVDTVTL-GDEEARARRCQKSILERKAPPTFYFLIEMRERHY 196 (241)
Q Consensus 147 --~p~l~~l~~-~~d~V~~-~~~~~~~~~~~~~~k~r~g~~~~~~~fe~~~~g~ 196 (241)
.|...+.++ .+...++ .+..... |.++.++++..|..+ ..|+++..|+
T Consensus 288 ~~~pagG~~~~h~~~~Rl~l~k~~~~~-R~~~v~ksp~lp~~~-~~f~It~~GI 339 (344)
T PLN03187 288 PKKPAGGHVLAHAATIRLMLRKGKGEQ-RVCKVFDAPNLPEAE-AEFQITSGGI 339 (344)
T ss_pred CCCCCCchhhheeeeEEEEEEcCCCCe-EEEEEEECCCCCCce-EEEEEeCCCc
Confidence 232223222 1555554 2222222 677888888765544 6799999887
|
|
| >PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency [] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.4e-09 Score=87.32 Aligned_cols=38 Identities=24% Similarity=0.400 Sum_probs=26.1
Q ss_pred cCCcEEEEcCCCCHHhH-----HHHHHHHhCCcEEEEeecCCC
Q 026207 103 HMPEVIIVDEIGTEAEA-----HACRSIAERGVMLIGTAHGEW 140 (241)
Q Consensus 103 ~~p~vlilDE~~~~~d~-----~~~~~~~~~g~~vi~t~H~~~ 140 (241)
.+++++++||++.++.. +++..+.+.+..+|+|+|...
T Consensus 94 ~~~~liviDEIG~mEl~~~~F~~~v~~~l~s~~~vi~vv~~~~ 136 (168)
T PF03266_consen 94 SSSDLIVIDEIGKMELKSPGFREAVEKLLDSNKPVIGVVHKRS 136 (168)
T ss_dssp HCCHEEEE---STTCCC-CHHHHHHHHHHCTTSEEEEE--SS-
T ss_pred CCCCEEEEeccchhhhcCHHHHHHHHHHHcCCCcEEEEEecCC
Confidence 68999999999987543 566677788899999999983
|
It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A. |
| >cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases | Back alignment and domain information |
|---|
Probab=98.73 E-value=5.3e-08 Score=83.67 Aligned_cols=38 Identities=32% Similarity=0.313 Sum_probs=31.4
Q ss_pred eccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 25 IFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 25 ~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
...+++|.|+||+||||++.+++.......|.+|+|++
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS 66 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS 66 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEE
Confidence 33489999999999999999998877544467888887
|
Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands. |
| >PRK04301 radA DNA repair and recombination protein RadA; Validated | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.5e-08 Score=85.80 Aligned_cols=164 Identities=15% Similarity=0.149 Sum_probs=89.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcccc-----CCCeEEEEcCCcccCCC---------CCCccccccchhhcCCCCCcccH
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDE-----FQKRVVIVDTSNEIGGD---------GDIPHSAIGTARRMQVPEPSLQH 93 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~-----~g~~v~~i~~~~e~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 93 (241)
++.|+||||||||+++.+++...... .+.+++|++....+... +..+...+.........+.. .+
T Consensus 104 vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~~~g~~~~~~l~~i~~~~~~~~~-~~ 182 (317)
T PRK04301 104 ITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEALGLDPDEVLDNIHVARAYNSD-HQ 182 (317)
T ss_pred EEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHHHcCCChHhhhccEEEEeCCCHH-HH
Confidence 79999999999999999998754311 13489999943322110 00000000000001111111 11
Q ss_pred HH---HHHHHH-h-cCCcEEEEcCCCCHHhH-----------H---------HHHHHHhCCcEEEEeecCCChhhh-hc-
Q 026207 94 KV---MIEAVE-N-HMPEVIIVDEIGTEAEA-----------H---------ACRSIAERGVMLIGTAHGEWLENI-IK- 146 (241)
Q Consensus 94 ~~---~~~~~l-~-~~p~vlilDE~~~~~d~-----------~---------~~~~~~~~g~~vi~t~H~~~~~~~-~~- 146 (241)
.. .+.... . .+++++|+|++.+.... . ....+.+.|+++++|.|..+-.+. ..
T Consensus 183 ~~~~~~l~~~i~~~~~~~lvVIDSisa~~~~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~vavl~tnqv~~~~~~~~~~ 262 (317)
T PRK04301 183 MLLAEKAEELIKEGENIKLVIVDSLTAHFRAEYVGRGNLAERQQKLNKHLHDLLRLADLYNAAVVVTNQVMARPDAFFGD 262 (317)
T ss_pred HHHHHHHHHHHhccCceeEEEEECchHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeceEEeccccccCc
Confidence 11 112222 2 57889999998875322 0 111346789999999986542211 11
Q ss_pred --CC----ccccccccccEEEe-CChHHHHHHHHHhhhccCCCCCceEEEEEEcCceE
Q 026207 147 --NP----ILSDLIGGVDTVTL-GDEEARARRCQKSILERKAPPTFYFLIEMRERHYW 197 (241)
Q Consensus 147 --~p----~l~~l~~~~d~V~~-~~~~~~~~~~~~~~k~r~g~~~~~~~fe~~~~g~~ 197 (241)
.| .+.|. +++.+. ....... |.++.+|++++++.. ..|+|++.|++
T Consensus 263 ~~~~~~G~~~~~~---~~~rl~l~k~~~~~-R~~~v~k~~~~~~~~-~~f~I~~~Gi~ 315 (317)
T PRK04301 263 PTQPIGGHILGHT---ATFRIYLRKSKGNK-RIARLVDSPHLPEGE-AVFRITEEGIR 315 (317)
T ss_pred cccCCcchHhHhh---eeEEEEEEecCCCc-eEEEEEeCCCCCCce-EEEEEeCCccc
Confidence 12 23444 665555 2211112 678888999888764 48999998873
|
|
| >TIGR02238 recomb_DMC1 meiotic recombinase Dmc1 | Back alignment and domain information |
|---|
Probab=98.72 E-value=6.1e-08 Score=85.31 Aligned_cols=158 Identities=17% Similarity=0.135 Sum_probs=87.9
Q ss_pred EEEEEeCCCchHHHHHHHHHH--hcccc---CCCeEEEEcCCcccCCCCCCccccccchhhcCC--------------CC
Q 026207 28 FFLSYFRPGVGKTTVMREIAR--VLSDE---FQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQV--------------PE 88 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~--~l~~~---~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~--------------~~ 88 (241)
++.|+||||||||+|+.+++- .++.. .+.+++|++....+.. ......+.+... .+
T Consensus 98 iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~-----eRi~~~a~~~g~d~~~~l~~i~~~~~~~ 172 (313)
T TIGR02238 98 ITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRP-----DRIRAIAERFGVDPDAVLDNILYARAYT 172 (313)
T ss_pred EEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCH-----HHHHHHHHHcCCChHHhcCcEEEecCCC
Confidence 899999999999999988774 33321 2468999994432211 111001111111 11
Q ss_pred CcccHHHHHH----HHHhcCCcEEEEcCCCCHHhH----------------H----HHHHHHhCCcEEEEeecCCChhhh
Q 026207 89 PSLQHKVMIE----AVENHMPEVIIVDEIGTEAEA----------------H----ACRSIAERGVMLIGTAHGEWLENI 144 (241)
Q Consensus 89 ~~~~~~~~~~----~~l~~~p~vlilDE~~~~~d~----------------~----~~~~~~~~g~~vi~t~H~~~~~~~ 144 (241)
.. .+...+. .+...+++++|+|++.+.... + ....+.+.++++++|-|..+-.+.
T Consensus 173 ~e-~~~~~l~~l~~~i~~~~~~LvVIDSisal~r~~~~~~g~~~~r~~~l~~~~~~L~~la~~~~vavvitNqv~~~~~~ 251 (313)
T TIGR02238 173 SE-HQMELLDYLAAKFSEEPFRLLIVDSIMALFRVDFSGRGELSERQQKLAQMLSRLNKISEEFNVAVFVTNQVQADPGA 251 (313)
T ss_pred HH-HHHHHHHHHHHHhhccCCCEEEEEcchHhhhhhccCccchHHHHHHHHHHHHHHHHHHHHcCcEEEEECceEecCCc
Confidence 11 1111121 223457999999998755321 0 111456679999999998863332
Q ss_pred ----hcCC-------ccccccccccEEEe-CChHHHHHHHHHhhhccCCCCCceEEEEEEcCce
Q 026207 145 ----IKNP-------ILSDLIGGVDTVTL-GDEEARARRCQKSILERKAPPTFYFLIEMRERHY 196 (241)
Q Consensus 145 ----~~~p-------~l~~l~~~~d~V~~-~~~~~~~~~~~~~~k~r~g~~~~~~~fe~~~~g~ 196 (241)
.++| .+.|. ++..++ .+..... |..+-++...-|. -+..|+++..|+
T Consensus 252 ~~~~~~~~~~p~gG~~~~h~---~~~Rl~l~k~~~~~-R~~~~~~sp~~p~-~~~~f~i~~~Gi 310 (313)
T TIGR02238 252 TMTFIADPKKPIGGHVLAHA---STTRILLRKGRGEE-RVAKLYDSPDMPE-AEASFQITEGGI 310 (313)
T ss_pred ccccCCCCccCcchhhhhhh---eeEEEEEEecCCCe-EEEEEeeCCCCCC-eEEEEEEeCCcc
Confidence 1233 34555 777666 3221111 4455555554443 457788888886
|
This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis. |
| >cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.8e-08 Score=82.71 Aligned_cols=174 Identities=16% Similarity=0.096 Sum_probs=89.6
Q ss_pred eeCcceeeccEEEEEeCCCchHHHHHHHHHHhccccC-----CCeEEEEcCCcccCCCC---------CCccccccchhh
Q 026207 18 LYSINKIIFDFFLSYFRPGVGKTTVMREIARVLSDEF-----QKRVVIVDTSNEIGGDG---------DIPHSAIGTARR 83 (241)
Q Consensus 18 ~~~~~~~~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~-----g~~v~~i~~~~e~~~~~---------~~~~~~~~~~~~ 83 (241)
+++..-....++.|.|||||||||++.+++....... +.+++|++......... ..+.... .+
T Consensus 11 ~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~---~~ 87 (235)
T cd01123 11 LLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVL---DN 87 (235)
T ss_pred hccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHh---cC
Confidence 3344334445899999999999999999986542211 36889998333211000 0000000 00
Q ss_pred cCCC--CCcccH----HHHHHHHHhc-CCcEEEEcCCCCHHhH-------------------HHH-HHHHhCCcEEEEee
Q 026207 84 MQVP--EPSLQH----KVMIEAVENH-MPEVIIVDEIGTEAEA-------------------HAC-RSIAERGVMLIGTA 136 (241)
Q Consensus 84 ~~~~--~~~~~~----~~~~~~~l~~-~p~vlilDE~~~~~d~-------------------~~~-~~~~~~g~~vi~t~ 136 (241)
+.+. ...... ..+...+... ++++++||.+.+.... ..+ ..+.+.+++++.|.
T Consensus 88 i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~avl~tn 167 (235)
T cd01123 88 IYVARAYNSDHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDGRGELAERQQHLAKLLRTLKRLADEFNVAVVITN 167 (235)
T ss_pred EEEEecCCHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEec
Confidence 1100 000111 1122233445 8999999999764211 001 13457899999998
Q ss_pred cCCChhhh-------hcCCccccccc-cccEEEe-CChHHHHHHHHHhhhccCCCCCceEEEEEEcCce
Q 026207 137 HGEWLENI-------IKNPILSDLIG-GVDTVTL-GDEEARARRCQKSILERKAPPTFYFLIEMRERHY 196 (241)
Q Consensus 137 H~~~~~~~-------~~~p~l~~l~~-~~d~V~~-~~~~~~~~~~~~~~k~r~g~~~~~~~fe~~~~g~ 196 (241)
|.....+. ...|.+-..+. .++..++ ...... .|.++.+|+...+ .....|++++.|+
T Consensus 168 ~~~~~~~~~~~~~~~~~~p~lG~~w~~~v~~Rl~l~~~~~~-~r~~~i~k~~~~~-~~~~~f~It~~Gi 234 (235)
T cd01123 168 QVTARPDGAAMFGGDPKKPAGGNIWAHASTTRLYLRKGRGE-ERIAKIVDSPHLP-EGEAVFAITEEGI 234 (235)
T ss_pred cEeecCCcccccCCCCeeccCccHhhCCceEEEEEEECCCC-ceEEEEeeCCCCC-CceEEEEEeCCcc
Confidence 87642221 11122212111 1443333 211111 2667778877666 4567899988875
|
This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 . |
| >PRK09302 circadian clock protein KaiC; Reviewed | Back alignment and domain information |
|---|
Probab=98.71 E-value=5.1e-08 Score=91.31 Aligned_cols=183 Identities=14% Similarity=0.126 Sum_probs=101.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC--------CCCc--cccccchhhcCCCCCcc----cH
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD--------GDIP--HSAIGTARRMQVPEPSL----QH 93 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~--------~~~~--~~~~~~~~~~~~~~~~~----~~ 93 (241)
+++|.|+||+|||+++.+++...... |.+++|++ .++.... +... ....+...-....+... ..
T Consensus 275 ~~li~G~~G~GKT~l~~~~~~~~~~~-g~~~~yis-~e~~~~~i~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~~~~~ 352 (509)
T PRK09302 275 IILVSGATGTGKTLLASKFAEAACRR-GERCLLFA-FEESRAQLIRNARSWGIDLEKMEEKGLLKIICARPESYGLEDHL 352 (509)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhC-CCcEEEEE-ecCCHHHHHHHHHHcCCChHHHhhcCCceeecCCcccCCHHHHH
Confidence 79999999999999999998765444 68899987 3332110 0000 00000000001111111 22
Q ss_pred HHHHHHHHhcCCcEEEEcCCCCHHhH---H--------HHHHHHhCCcEEEEeecCCChh--hhhcCCccccccccccEE
Q 026207 94 KVMIEAVENHMPEVIIVDEIGTEAEA---H--------ACRSIAERGVMLIGTAHGEWLE--NIIKNPILSDLIGGVDTV 160 (241)
Q Consensus 94 ~~~~~~~l~~~p~vlilDE~~~~~d~---~--------~~~~~~~~g~~vi~t~H~~~~~--~~~~~p~l~~l~~~~d~V 160 (241)
..+.+.+...+|+++++|.++..... . ....+++.|++++.|.+..... .......++++ ||.|
T Consensus 353 ~~i~~~i~~~~~~~vVIDslt~l~~~~~~~~~~~~l~~l~~~~k~~~~t~l~t~~~~~~~g~~~~~~~~~~~l---~D~v 429 (509)
T PRK09302 353 IIIKREIEEFKPSRVAIDPLSALARGGSLNEFRQFVIRLTDYLKSEEITGLFTNLTPDFMGSHSITESHISSL---TDTW 429 (509)
T ss_pred HHHHHHHHHcCCCEEEEcCHHHHHHhCCHHHHHHHHHHHHHHHHhCCCeEEEEeccccccCCCCCCcCceEEe---eeEE
Confidence 23333444678999999998765322 1 1224567899999887755321 11111246778 8998
Q ss_pred Ee---CChHHHHHHHHHhhhccCCC-CCceEEEEEEcCceEEeecchHHHHHHhcCCCcc
Q 026207 161 TL---GDEEARARRCQKSILERKAP-PTFYFLIEMRERHYWVTHKTEKSVDMLLRGKTPL 216 (241)
Q Consensus 161 ~~---~~~~~~~~~~~~~~k~r~g~-~~~~~~fe~~~~g~~~~~~~~~~~~~~l~G~~~~ 216 (241)
+. -+.....+|.++.+|.|-.+ +.-...|++++.|+.+... ..-..-++.|..-.
T Consensus 430 I~L~~~~~~~~~~R~l~I~K~Rg~~~~~~~~~f~It~~Gi~v~~~-~~~~~~~~~g~~~~ 488 (509)
T PRK09302 430 ILLQYVEINGEMNRALYVLKMRGSWHSNQIREFVITDKGIHIKDP-FRGFEGILSGSPRR 488 (509)
T ss_pred EEEEEeecCCeeEEEEEEEEcCCCCCCCceEEEEEeCCcEEEccc-ccCCCccccCCCcc
Confidence 87 22122233667777877433 3345678999999865422 12223344555444
|
|
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.68 E-value=5.8e-08 Score=77.68 Aligned_cols=35 Identities=11% Similarity=0.313 Sum_probs=28.2
Q ss_pred cEEEEcCCCCHHhHHH-------HHHHHhCCcEEEEeecCCC
Q 026207 106 EVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEW 140 (241)
Q Consensus 106 ~vlilDE~~~~~d~~~-------~~~~~~~g~~vi~t~H~~~ 140 (241)
+++++|||.+.+|... +......|.+||++.|..+
T Consensus 152 ~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLN 193 (248)
T COG4138 152 QLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLN 193 (248)
T ss_pred eeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchh
Confidence 5999999999998831 2245577999999999887
|
|
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.2e-08 Score=74.43 Aligned_cols=70 Identities=24% Similarity=0.345 Sum_probs=48.9
Q ss_pred EEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcC-CcE
Q 026207 29 FLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHM-PEV 107 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-p~v 107 (241)
++|.||||+||||+++.++..+. ..++.++ ..++... ...+........+..+.... |.+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~----~~~~~i~-~~~~~~~--------------~~~~~~~~i~~~~~~~~~~~~~~v 61 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG----FPFIEID-GSELISS--------------YAGDSEQKIRDFFKKAKKSAKPCV 61 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT----SEEEEEE-TTHHHTS--------------STTHHHHHHHHHHHHHHHTSTSEE
T ss_pred CEEECcCCCCeeHHHHHHHhhcc----ccccccc-ccccccc--------------ccccccccccccccccccccccee
Confidence 68999999999999999999974 5678887 4443211 00111234555666666666 999
Q ss_pred EEEcCCCCHH
Q 026207 108 IIVDEIGTEA 117 (241)
Q Consensus 108 lilDE~~~~~ 117 (241)
+++||+....
T Consensus 62 l~iDe~d~l~ 71 (132)
T PF00004_consen 62 LFIDEIDKLF 71 (132)
T ss_dssp EEEETGGGTS
T ss_pred eeeccchhcc
Confidence 9999986543
|
Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G .... |
| >PTZ00035 Rad51 protein; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.1e-07 Score=84.51 Aligned_cols=163 Identities=13% Similarity=0.079 Sum_probs=87.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcc-c----cCCCeEEEEcCCcccCCC---------CCCccccccchhhcCCCCCcccH
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLS-D----EFQKRVVIVDTSNEIGGD---------GDIPHSAIGTARRMQVPEPSLQH 93 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~-~----~~g~~v~~i~~~~e~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 93 (241)
++.|+||||||||||+.+++.... | ..+.+++|++....+... +..+.............+.. .+
T Consensus 120 iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia~~~g~~~~~~l~nI~~~~~~~~e-~~ 198 (337)
T PTZ00035 120 ITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIAERFGLDPEDVLDNIAYARAYNHE-HQ 198 (337)
T ss_pred EEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHHHHhCCChHhHhhceEEEccCCHH-HH
Confidence 799999999999999999986543 1 024588899843322110 00000000000000111111 11
Q ss_pred HHHH----HHHHhcCCcEEEEcCCCCHHhH-----------H-----H---HH-HHHhCCcEEEEeecCCChhhh---h-
Q 026207 94 KVMI----EAVENHMPEVIIVDEIGTEAEA-----------H-----A---CR-SIAERGVMLIGTAHGEWLENI---I- 145 (241)
Q Consensus 94 ~~~~----~~~l~~~p~vlilDE~~~~~d~-----------~-----~---~~-~~~~~g~~vi~t~H~~~~~~~---~- 145 (241)
...+ ..+...+++++|+|++.+.... . . +. .+...|+++++|-|..+-.+. +
T Consensus 199 ~~~l~~~~~~l~~~~~~lvVIDSital~r~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~vavvvtNqv~~~~~~~~~~~ 278 (337)
T PTZ00035 199 MQLLSQAAAKMAEERFALLIVDSATALFRVDYSGRGELAERQQHLGKFLRALQKLADEFNVAVVITNQVMADVDGASMFV 278 (337)
T ss_pred HHHHHHHHHHhhccCccEEEEECcHHhhhhhccCcccHHHHHHHHHHHHHHHHHHHHHcCcEEEEecceEEecCCccccC
Confidence 1121 1222467899999998764321 0 0 11 234679999999887753211 1
Q ss_pred c---CCc----cccccccccEEEe-CChHHHHHHHHHhhhccCCCCCceEEEEEEcCce
Q 026207 146 K---NPI----LSDLIGGVDTVTL-GDEEARARRCQKSILERKAPPTFYFLIEMRERHY 196 (241)
Q Consensus 146 ~---~p~----l~~l~~~~d~V~~-~~~~~~~~~~~~~~k~r~g~~~~~~~fe~~~~g~ 196 (241)
. .|. +.|. ++..++ ....... |.++.+++++.|... ..|+|++.|+
T Consensus 279 ~~~~~p~gG~~~~h~---~~~Rl~l~k~~~~~-R~~~i~ksp~~p~~~-~~f~It~~Gi 332 (337)
T PTZ00035 279 ADPKKPIGGHIIAHA---STTRLSLRKGRGEQ-RICKIYDSPNLPESE-AVFAISEGGI 332 (337)
T ss_pred CCCccCCchHHHHhh---eeEEEEEEecCCCe-eEEEEEECCCCCCee-EEEEEeCCcc
Confidence 1 122 3333 555444 2211112 667777888777665 6899999987
|
|
| >cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=98.64 E-value=9.7e-08 Score=82.62 Aligned_cols=54 Identities=15% Similarity=0.117 Sum_probs=38.6
Q ss_pred CCCcccHHHHHHHHHhc----CCcEEEEcCCCCHHhHHHHH------HHHhCCcEEEEeecCCC
Q 026207 87 PEPSLQHKVMIEAVENH----MPEVIIVDEIGTEAEAHACR------SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~----~p~vlilDE~~~~~d~~~~~------~~~~~g~~vi~t~H~~~ 140 (241)
++++++++..++.+... +|+++++|||.+.+|+.... .....+.++|+++|...
T Consensus 171 lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~ 234 (276)
T cd03241 171 ASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQ 234 (276)
T ss_pred cChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHH
Confidence 34566777777764432 99999999999999995433 11234678999999764
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.5e-07 Score=93.28 Aligned_cols=64 Identities=11% Similarity=0.113 Sum_probs=49.0
Q ss_pred CCCcccHHHHHHHHHhc---CCcEEEEcCCCCHHhHHHH-------HHHHhCCcEEEEeecCCChhhhhcCCcccccccc
Q 026207 87 PEPSLQHKVMIEAVENH---MPEVIIVDEIGTEAEAHAC-------RSIAERGVMLIGTAHGEWLENIIKNPILSDLIGG 156 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~---~p~vlilDE~~~~~d~~~~-------~~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~ 156 (241)
+|++++++..++.++.. +|+++++|||++++|+... ....+.|.++|++.|... .+ ..
T Consensus 829 LSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~--------~i-~~--- 896 (924)
T TIGR00630 829 LSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLD--------VI-KT--- 896 (924)
T ss_pred CCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--------HH-Hh---
Confidence 34566889999888876 5999999999999999443 244557999999999886 23 23
Q ss_pred ccEEEe
Q 026207 157 VDTVTL 162 (241)
Q Consensus 157 ~d~V~~ 162 (241)
+|.++.
T Consensus 897 aD~ii~ 902 (924)
T TIGR00630 897 ADYIID 902 (924)
T ss_pred CCEEEE
Confidence 788776
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.1e-07 Score=78.05 Aligned_cols=108 Identities=17% Similarity=0.196 Sum_probs=57.5
Q ss_pred cEEEEEeCCCchHHHHHHHHHH-hccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCC---CCcc--------cHH
Q 026207 27 DFFLSYFRPGVGKTTVMREIAR-VLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVP---EPSL--------QHK 94 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~-~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~---~~~~--------~~~ 94 (241)
.+++|+||||+||||+++++++ .+.++.|.-+ .-....+.. ..+.. .++... ..+. +..
T Consensus 32 ~~~~itG~N~~GKStll~~i~~~~~la~~G~~v--~a~~~~~~~----~~~i~---~~~~~~d~~~~~~StF~~e~~~~~ 102 (222)
T cd03287 32 YCQIITGPNMGGKSSYIRQVALITIMAQIGSFV--PASSATLSI----FDSVL---TRMGASDSIQHGMSTFMVELSETS 102 (222)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEE--EcCceEEec----cceEE---EEecCccccccccchHHHHHHHHH
Confidence 3899999999999999999998 4444433311 110111100 00000 011110 0111 111
Q ss_pred HHHHHHHhcCCcEEEEcCCCCHHh---HHH-----HHHHHhC-CcEEEEeecCCChhhhh
Q 026207 95 VMIEAVENHMPEVIIVDEIGTEAE---AHA-----CRSIAER-GVMLIGTAHGEWLENII 145 (241)
Q Consensus 95 ~~~~~~l~~~p~vlilDE~~~~~d---~~~-----~~~~~~~-g~~vi~t~H~~~~~~~~ 145 (241)
.++.. ..+++++++|||+.+.+ ... +....+. +.+++.++|...+....
T Consensus 103 ~il~~--~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 103 HILSN--CTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred HHHHh--CCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHHHHHHH
Confidence 22222 24789999999965544 222 1233344 78899999998755443
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.2e-07 Score=86.51 Aligned_cols=111 Identities=14% Similarity=0.147 Sum_probs=72.4
Q ss_pred EEEEeCCCchHHHHHHHHHHhccccCC-------CeEEEEcCCc--------------ccCCCCCCccc----c---ccc
Q 026207 29 FLSYFRPGVGKTTVMREIARVLSDEFQ-------KRVVIVDTSN--------------EIGGDGDIPHS----A---IGT 80 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~l~~~~g-------~~v~~i~~~~--------------e~~~~~~~~~~----~---~~~ 80 (241)
+.+.|+||+||||+++.+.+.+.+..| .++.|..+.+ +-...+. +.. . +|.
T Consensus 393 i~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~-~~ee~r~hl~~~Gl 471 (582)
T KOG0062|consen 393 ISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPRLRIKYFAQHHVDFLDKNVNAVDFMEKSFPGK-TEEEIRRHLGSFGL 471 (582)
T ss_pred hheeccCchhHHHHHHHHhccCCcccceeeecccceecchhHhhhhHHHHHhHHHHHHHHhCCCC-CHHHHHHHHHhcCC
Confidence 889999999999999999998875511 2222221100 0000000 000 0 000
Q ss_pred -----hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH---HH-HhCCcEEEEeecCCC
Q 026207 81 -----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR---SI-AERGVMLIGTAHGEW 140 (241)
Q Consensus 81 -----~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~---~~-~~~g~~vi~t~H~~~ 140 (241)
...+..+|+|++.++.++.+.-++|.+|+||||++.+|...+. .| ++-+-.|++++|...
T Consensus 472 ~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~GGVv~VSHd~~ 540 (582)
T KOG0062|consen 472 SGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNFNGGVVLVSHDEE 540 (582)
T ss_pred CchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhcCCcEEEEECcHH
Confidence 0124557889999999999999999999999999999986543 33 333445777779887
|
|
| >PRK05973 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.1e-07 Score=78.67 Aligned_cols=123 Identities=16% Similarity=0.153 Sum_probs=69.6
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC--------CCCccccccchhhcCCCCCcccHHHHHH
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD--------GDIPHSAIGTARRMQVPEPSLQHKVMIE 98 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (241)
.+++|.|+||+||||+..+++...... |.+++|++ .++.... +......... ..+... ........+.
T Consensus 65 sl~LIaG~PG~GKT~lalqfa~~~a~~-Ge~vlyfS-lEes~~~i~~R~~s~g~d~~~~~~~-~~~d~~-d~~~~~~ii~ 140 (237)
T PRK05973 65 DLVLLGARPGHGKTLLGLELAVEAMKS-GRTGVFFT-LEYTEQDVRDRLRALGADRAQFADL-FEFDTS-DAICADYIIA 140 (237)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEEEE-EeCCHHHHHHHHHHcCCChHHhccc-eEeecC-CCCCHHHHHH
Confidence 389999999999999999998876555 78888887 4443110 0000000000 000111 1122333333
Q ss_pred HHH-hcCCcEEEEcCCCCHHh----HH---H---H-HHHHhCCcEEEEeecCCChhhhh--cCCccccc
Q 026207 99 AVE-NHMPEVIIVDEIGTEAE----AH---A---C-RSIAERGVMLIGTAHGEWLENII--KNPILSDL 153 (241)
Q Consensus 99 ~~l-~~~p~vlilDE~~~~~d----~~---~---~-~~~~~~g~~vi~t~H~~~~~~~~--~~p~l~~l 153 (241)
... ..+++++|||.++.... .+ . + ..+++.|++++.+.+.+...+.- .+|.+.++
T Consensus 141 ~l~~~~~~~lVVIDsLq~l~~~~~~~el~~~~~~Lk~~Ak~~gitvIl~sQl~r~~e~~~~~~P~laDl 209 (237)
T PRK05973 141 RLASAPRGTLVVIDYLQLLDQRREKPDLSVQVRALKSFARERGLIIVFISQIDRSFDPSAKPLPDIRDV 209 (237)
T ss_pred HHHHhhCCCEEEEEcHHHHhhcccchhHHHHHHHHHHHHHhCCCeEEEEecCccccccCCCCCCChhhc
Confidence 333 35789999999875521 11 1 1 24577899999998887632221 24555554
|
|
| >PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.58 E-value=8e-08 Score=93.97 Aligned_cols=111 Identities=16% Similarity=0.196 Sum_probs=60.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc-cccCCCeEEEEcCC--cccCCCCCCccccccch----hhcCCCCCcccHHHHHHHH
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL-SDEFQKRVVIVDTS--NEIGGDGDIPHSAIGTA----RRMQVPEPSLQHKVMIEAV 100 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l-~~~~g~~v~~i~~~--~e~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 100 (241)
+++|+|||++||||+|+.++... -...|. +++-. ..+..-.. ....++.. .....++.++++...+...
T Consensus 329 ~~iITGpN~gGKTt~lktigl~~~maq~G~---~vpa~~~~~i~~~~~-i~~~ig~~~si~~~lStfS~~m~~~~~Il~~ 404 (782)
T PRK00409 329 VLVITGPNTGGKTVTLKTLGLAALMAKSGL---PIPANEPSEIPVFKE-IFADIGDEQSIEQSLSTFSGHMTNIVRILEK 404 (782)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHHHHhCC---CcccCCCccccccce-EEEecCCccchhhchhHHHHHHHHHHHHHHh
Confidence 78999999999999999987542 112121 22211 11110000 00000100 0112223344444333332
Q ss_pred HhcCCcEEEEcCCCCHHhHHHH--------HHHHhCCcEEEEeecCCChhh
Q 026207 101 ENHMPEVIIVDEIGTEAEAHAC--------RSIAERGVMLIGTAHGEWLEN 143 (241)
Q Consensus 101 l~~~p~vlilDE~~~~~d~~~~--------~~~~~~g~~vi~t~H~~~~~~ 143 (241)
. .+|+++++|||+++.|+... ....+.|.++|+|+|...+..
T Consensus 405 ~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~ 454 (782)
T PRK00409 405 A-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKA 454 (782)
T ss_pred C-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHH
Confidence 2 58999999999999887321 123456889999999876433
|
|
| >KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription] | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.3e-07 Score=75.17 Aligned_cols=56 Identities=16% Similarity=0.122 Sum_probs=44.5
Q ss_pred CCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH--------HHHhCCcEEEEeecCCC
Q 026207 85 QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR--------SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~--------~~~~~g~~vi~t~H~~~ 140 (241)
...|.+++.++.+..-+.+...++++||++-.+|..+.. ++..+|++|+..+|.-+
T Consensus 146 HkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFD 209 (291)
T KOG2355|consen 146 HKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFD 209 (291)
T ss_pred eeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeecc
Confidence 334566788888888888888999999999988874432 45668999999999886
|
|
| >cd00984 DnaB_C DnaB helicase C terminal domain | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.6e-07 Score=77.93 Aligned_cols=38 Identities=26% Similarity=0.329 Sum_probs=31.2
Q ss_pred eccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 25 IFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 25 ~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
+..+++|.|+||+||||++.+++-......+.+++|++
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s 49 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFS 49 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEe
Confidence 33489999999999999999988776554467888887
|
The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. |
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.2e-07 Score=69.84 Aligned_cols=78 Identities=24% Similarity=0.337 Sum_probs=48.1
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCC
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMP 105 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p 105 (241)
...++|+||||+||||+++.++..+... +..+++++ ..+...... ... ... ..............++
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~-~~~v~~~~-~~~~~~~~~-----~~~--~~~----~~~~~~~~~~~~~~~~ 85 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRP-GAPFLYLN-ASDLLEGLV-----VAE--LFG----HFLVRLLFELAEKAKP 85 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcC-CCCeEEEe-hhhhhhhhH-----HHH--Hhh----hhhHhHHHHhhccCCC
Confidence 4579999999999999999999988533 45677776 333211100 000 000 0012223334445678
Q ss_pred cEEEEcCCCCH
Q 026207 106 EVIIVDEIGTE 116 (241)
Q Consensus 106 ~vlilDE~~~~ 116 (241)
.++++||+...
T Consensus 86 ~~lilDe~~~~ 96 (151)
T cd00009 86 GVLFIDEIDSL 96 (151)
T ss_pred eEEEEeChhhh
Confidence 99999999865
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.7e-07 Score=94.94 Aligned_cols=54 Identities=15% Similarity=0.188 Sum_probs=44.4
Q ss_pred CCCcccHHHHHHHHHh---cCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCC
Q 026207 87 PEPSLQHKVMIEAVEN---HMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~---~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~ 140 (241)
+|++++|+..+++++. .+|+++|+|||++++|+.... ...+.|.++|+++|..+
T Consensus 810 LSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~ 873 (1809)
T PRK00635 810 LSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMH 873 (1809)
T ss_pred CCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 4556799999999986 699999999999999985432 44567999999999986
|
|
| >COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.2e-07 Score=82.16 Aligned_cols=124 Identities=19% Similarity=0.214 Sum_probs=78.3
Q ss_pred ceeeccEEEEEeCCCchHHHHHHHHHHhccccCC------CeEEEEcC-------CcccCCC----CCCcc------c--
Q 026207 22 NKIIFDFFLSYFRPGVGKTTVMREIARVLSDEFQ------KRVVIVDT-------SNEIGGD----GDIPH------S-- 76 (241)
Q Consensus 22 ~~~~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g------~~v~~i~~-------~~e~~~~----~~~~~------~-- 76 (241)
...+..++.+.|++|+||||+++.++|....... .-.+.+.. +.+.... ....| .
T Consensus 405 ~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tilehl~s~tGD~~ 484 (593)
T COG2401 405 EIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHLRSKTGDLN 484 (593)
T ss_pred EecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHHHHHhhccCchh
Confidence 3456668999999999999999999998753311 00111110 0110000 00000 0
Q ss_pred -c------------ccchhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH--------HHHhCCcEEEEe
Q 026207 77 -A------------IGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR--------SIAERGVMLIGT 135 (241)
Q Consensus 77 -~------------~~~~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~--------~~~~~g~~vi~t 135 (241)
. ..+.+...-++.+++.+.-++.+++..|.++++||..+.+|...+. .+.+.|+|++++
T Consensus 485 ~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivv 564 (593)
T COG2401 485 AAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVV 564 (593)
T ss_pred HHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEE
Confidence 0 0000123345667889999999999999999999999999985543 334569999998
Q ss_pred ecCCChhhhh
Q 026207 136 AHGEWLENII 145 (241)
Q Consensus 136 ~H~~~~~~~~ 145 (241)
+|..+.-+++
T Consensus 565 ThrpEv~~AL 574 (593)
T COG2401 565 THRPEVGNAL 574 (593)
T ss_pred ecCHHHHhcc
Confidence 8887644443
|
|
| >PF13173 AAA_14: AAA domain | Back alignment and domain information |
|---|
Probab=98.56 E-value=3e-07 Score=70.34 Aligned_cols=95 Identities=20% Similarity=0.306 Sum_probs=56.0
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCC
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMP 105 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p 105 (241)
..+++|.||.|+||||++++++..+.+ ..+++|++ -.+... ...... . ..+...+. ...++
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~--~~~~~yi~-~~~~~~------------~~~~~~--~-~~~~~~~~-~~~~~ 62 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLP--PENILYIN-FDDPRD------------RRLADP--D-LLEYFLEL-IKPGK 62 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcc--cccceeec-cCCHHH------------HHHhhh--h-hHHHHHHh-hccCC
Confidence 357999999999999999999987762 25678887 322210 000000 0 11112222 22367
Q ss_pred cEEEEcCCCCHHhHHH-HHHHHhCC--cEEEEeecCC
Q 026207 106 EVIIVDEIGTEAEAHA-CRSIAERG--VMLIGTAHGE 139 (241)
Q Consensus 106 ~vlilDE~~~~~d~~~-~~~~~~~g--~~vi~t~H~~ 139 (241)
.++++||++...+... +....+.+ ..++.|....
T Consensus 63 ~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~ 99 (128)
T PF13173_consen 63 KYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSS 99 (128)
T ss_pred cEEEEehhhhhccHHHHHHHHHHhccCceEEEEccch
Confidence 8999999998866533 33334443 5666655544
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.1e-07 Score=90.31 Aligned_cols=54 Identities=13% Similarity=0.116 Sum_probs=44.9
Q ss_pred CCCcccHHHHHHHHHhcCC---cEEEEcCCCCHHhHHHH-------HHHHhCCcEEEEeecCCC
Q 026207 87 PEPSLQHKVMIEAVENHMP---EVIIVDEIGTEAEAHAC-------RSIAERGVMLIGTAHGEW 140 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p---~vlilDE~~~~~d~~~~-------~~~~~~g~~vi~t~H~~~ 140 (241)
+|++++|+..++.++..+| +++|+|||++++|+... ....+.|.++|+++|..+
T Consensus 831 LSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~ 894 (943)
T PRK00349 831 LSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLD 894 (943)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 4556799999999999999 99999999999999443 244557899999999886
|
|
| >COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.55 E-value=9.6e-08 Score=83.87 Aligned_cols=70 Identities=27% Similarity=0.394 Sum_probs=53.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCcE
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEV 107 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~v 107 (241)
-||++||||+|||-|++++|...... .+-+- ++|+ .+..+| ++.-..+.+|+.|..+.|.+
T Consensus 187 GVLLYGPPGTGKTLLAkAVA~~T~At----FIrvv-gSEl------VqKYiG--------EGaRlVRelF~lArekaPsI 247 (406)
T COG1222 187 GVLLYGPPGTGKTLLAKAVANQTDAT----FIRVV-GSEL------VQKYIG--------EGARLVRELFELAREKAPSI 247 (406)
T ss_pred ceEeeCCCCCcHHHHHHHHHhccCce----EEEec-cHHH------HHHHhc--------cchHHHHHHHHHHhhcCCeE
Confidence 48999999999999999999987533 35555 6666 222222 23346688999999999999
Q ss_pred EEEcCCCCH
Q 026207 108 IIVDEIGTE 116 (241)
Q Consensus 108 lilDE~~~~ 116 (241)
||+||+.+.
T Consensus 248 IFiDEIDAI 256 (406)
T COG1222 248 IFIDEIDAI 256 (406)
T ss_pred EEEechhhh
Confidence 999998544
|
|
| >cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.1e-07 Score=79.46 Aligned_cols=155 Identities=17% Similarity=0.133 Sum_probs=80.8
Q ss_pred eccEEEEEeCCCchHHHHHHHHHHhccccCC------CeEEEEcCCcccCCCCCC-ccccccc-----hhhcCCC--CCc
Q 026207 25 IFDFFLSYFRPGVGKTTVMREIARVLSDEFQ------KRVVIVDTSNEIGGDGDI-PHSAIGT-----ARRMQVP--EPS 90 (241)
Q Consensus 25 ~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g------~~v~~i~~~~e~~~~~~~-~~~~~~~-----~~~~~~~--~~~ 90 (241)
...++.|.||||+|||+++.+++...... + .+++|++........... .....+. ..++.+. ...
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~-~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~~ 96 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLP-GELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLDPEEVLDNIYVARPYNG 96 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcc-cccCCCcceEEEEecCCCCCHHHHHHHHHHhccchhhhhccEEEEeCCCH
Confidence 44489999999999999999998875433 3 688999843322110000 0000000 0011111 011
Q ss_pred ccHHHHHHHHH----hcCCcEEEEcCCCCHHhH------------HH-------HH-HHHhCCcEEEEeecCCChhhhh-
Q 026207 91 LQHKVMIEAVE----NHMPEVIIVDEIGTEAEA------------HA-------CR-SIAERGVMLIGTAHGEWLENII- 145 (241)
Q Consensus 91 ~~~~~~~~~~l----~~~p~vlilDE~~~~~d~------------~~-------~~-~~~~~g~~vi~t~H~~~~~~~~- 145 (241)
......+..+. ..++++++||.+...... .. +. .+.+.+++++++.|..+..+..
T Consensus 97 ~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~tnq~~~~~~~~~ 176 (226)
T cd01393 97 EQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIGRGMLAERARLLSQALRKLLRLADKFNVAVVFTNQVRAKVDVMF 176 (226)
T ss_pred HHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEEEeeeccccc
Confidence 11222222222 457899999998754211 00 11 3456899999999986522211
Q ss_pred ---cCC----ccccccccccEEEe---CChHHHHHHHHHhhhccCCCC
Q 026207 146 ---KNP----ILSDLIGGVDTVTL---GDEEARARRCQKSILERKAPP 183 (241)
Q Consensus 146 ---~~p----~l~~l~~~~d~V~~---~~~~~~~~~~~~~~k~r~g~~ 183 (241)
..| .+.++ +|.+++ .+.....+|.+..+|+.+.|+
T Consensus 177 ~~~~~p~~G~~~~~~---~~~ri~l~~~~~~~~~~r~~~~~k~~~~~~ 221 (226)
T cd01393 177 GDPETPAGGNALAHA---STTRLDLRKGRGIIGERRIAKVVKSPALPE 221 (226)
T ss_pred CCCccccCchhhhCc---ccEEEEEEecCCccCcEEEEEEEeCCCCCC
Confidence 112 34445 777766 222111225566667765554
|
RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB. |
| >cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response | Back alignment and domain information |
|---|
Probab=98.51 E-value=3e-07 Score=81.01 Aligned_cols=162 Identities=19% Similarity=0.162 Sum_probs=85.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccc-hhhcCCCC--CcccHHHHHH-HHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGT-ARRMQVPE--PSLQHKVMIE-AVENH 103 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~-~~l~~ 103 (241)
++.|+||||||||||+..++...... |.+++|++ .++...... ...++. ..++.+.. ...++...+. .+...
T Consensus 57 iteI~Gp~GsGKTtLal~~~~~~~~~-g~~~vyId-~E~~~~~~~--a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s~ 132 (325)
T cd00983 57 IIEIYGPESSGKTTLALHAIAEAQKL-GGTVAFID-AEHALDPVY--AKKLGVDLDNLLISQPDTGEQALEIADSLVRSG 132 (325)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc-CCCEEEEC-ccccHHHHH--HHHcCCCHHHheecCCCCHHHHHHHHHHHHhcc
Confidence 89999999999999999988776544 67899998 443221100 000000 01111111 1112222222 23356
Q ss_pred CCcEEEEcCCCCHHh----------------HH----HHH----HHHhCCcEEEEeecCCChhhh-hcCC-------ccc
Q 026207 104 MPEVIIVDEIGTEAE----------------AH----ACR----SIAERGVMLIGTAHGEWLENI-IKNP-------ILS 151 (241)
Q Consensus 104 ~p~vlilDE~~~~~d----------------~~----~~~----~~~~~g~~vi~t~H~~~~~~~-~~~p-------~l~ 151 (241)
.++++|+|++.+... +. .+. .+...++++|+|-+..+-.+. +..| .+.
T Consensus 133 ~~~lIVIDSvaal~~~~E~~~~~~~~~~~~qaR~l~~~Lr~L~~~~~k~~~~vI~tNQvr~~ig~~~g~~e~~~GG~~L~ 212 (325)
T cd00983 133 AVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSINKSNTTVIFINQLREKIGVMFGNPETTTGGNALK 212 (325)
T ss_pred CCCEEEEcchHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhCCCEEEEEEccccccccccCCCccCCCchHHh
Confidence 799999999875532 11 111 345679999998776542221 1112 222
Q ss_pred cccccccEEE-e--------CChHHHHHHHHHhhhccCCCCCceEEEEEE-cCce
Q 026207 152 DLIGGVDTVT-L--------GDEEARARRCQKSILERKAPPTFYFLIEMR-ERHY 196 (241)
Q Consensus 152 ~l~~~~d~V~-~--------~~~~~~~~~~~~~~k~r~g~~~~~~~fe~~-~~g~ 196 (241)
+. +...+ + ++.....+...+.+||+..++.-...|.+. ++|+
T Consensus 213 ~~---ss~rl~lrk~~~~k~~~~~~G~~~~~~v~Knk~~~p~~~~~~~i~~~~Gi 264 (325)
T cd00983 213 FY---SSVRLDIRRIETIKDGDEVIGNRTKVKVVKNKVAPPFKTAEFDILFGEGI 264 (325)
T ss_pred hh---cceEEEEEeecccccCCcccccEEEEEEEecccCCCCCceEEEEEcCccc
Confidence 32 22222 1 111111113456678888888766666664 3454
|
RecA couples ATP hydrolysis to DNA strand exchange. |
| >PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.2e-06 Score=73.05 Aligned_cols=78 Identities=27% Similarity=0.334 Sum_probs=44.3
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPE 106 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~ 106 (241)
+.++++||||+|||||++.++..+.. .+...+ +..+.. .......+.. ..+.+
T Consensus 51 ~h~lf~GPPG~GKTTLA~IIA~e~~~----~~~~~s-g~~i~k--------------------~~dl~~il~~--l~~~~ 103 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARIIANELGV----NFKITS-GPAIEK--------------------AGDLAAILTN--LKEGD 103 (233)
T ss_dssp -EEEEESSTTSSHHHHHHHHHHHCT------EEEEE-CCC--S--------------------CHHHHHHHHT----TT-
T ss_pred ceEEEECCCccchhHHHHHHHhccCC----CeEecc-chhhhh--------------------HHHHHHHHHh--cCCCc
Confidence 47999999999999999999999863 333333 221100 0001111111 13568
Q ss_pred EEEEcCCCCHHhH--HHHHHHHhCCcE
Q 026207 107 VIIVDEIGTEAEA--HACRSIAERGVM 131 (241)
Q Consensus 107 vlilDE~~~~~d~--~~~~~~~~~g~~ 131 (241)
++|+||+....-. +.+..+.+.|..
T Consensus 104 ILFIDEIHRlnk~~qe~LlpamEd~~i 130 (233)
T PF05496_consen 104 ILFIDEIHRLNKAQQEILLPAMEDGKI 130 (233)
T ss_dssp EEEECTCCC--HHHHHHHHHHHHCSEE
T ss_pred EEEEechhhccHHHHHHHHHHhccCeE
Confidence 9999999877433 344456676665
|
Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B. |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.50 E-value=4.7e-07 Score=83.51 Aligned_cols=67 Identities=22% Similarity=0.271 Sum_probs=52.7
Q ss_pred CCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhH-------HHHHHHHhCCcEEEEeecCCChhhhhcCCccccccccc
Q 026207 85 QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGV 157 (241)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~-------~~~~~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~ 157 (241)
..+|++-+|++.++..+..+|+++|+|||+.+.|. ..+.+.+..|.+|++.+-.. |++..+ |
T Consensus 400 ~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSEl--------pEll~~---~ 468 (500)
T COG1129 400 GTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSEL--------PELLGL---S 468 (500)
T ss_pred hcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCCh--------HHHHhh---C
Confidence 34567779999999999999999999999999998 23346677899988844433 255555 9
Q ss_pred cEEEe
Q 026207 158 DTVTL 162 (241)
Q Consensus 158 d~V~~ 162 (241)
|+|+.
T Consensus 469 DRIlV 473 (500)
T COG1129 469 DRILV 473 (500)
T ss_pred CEEEE
Confidence 99998
|
|
| >cd01125 repA Hexameric Replicative Helicase RepA | Back alignment and domain information |
|---|
Probab=98.49 E-value=7.6e-07 Score=75.34 Aligned_cols=112 Identities=15% Similarity=0.181 Sum_probs=62.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcc-----------ccCCCeEEEEcCCcccCCC----------CC----Cccc---ccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLS-----------DEFQKRVVIVDTSNEIGGD----------GD----IPHS---AIG 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~-----------~~~g~~v~~i~~~~e~~~~----------~~----~~~~---~~~ 79 (241)
+.+|.||+|+|||||+.+++-.+. +..+.+|+|++ .++.... .. .... ..+
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~-~Ed~~~~i~~Rl~~i~~~~~~~~~~~rl~~~~g 81 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLS-AEDPREEIHRRLEAILQHLEPDDAGDRLFIDSG 81 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEE-CCCCHHHHHHHHHHHHhhcCCcCcccceEEecc
Confidence 578999999999999999987543 12346889987 3332110 00 0000 000
Q ss_pred chhhcCCCC-----CcccHHHHHHHHHhcCCcEEEEcCCCC-----HHhHHH-------HH-HHHhCCcEEEEeecCCC
Q 026207 80 TARRMQVPE-----PSLQHKVMIEAVENHMPEVIIVDEIGT-----EAEAHA-------CR-SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 80 ~~~~~~~~~-----~~~~~~~~~~~~l~~~p~vlilDE~~~-----~~d~~~-------~~-~~~~~g~~vi~t~H~~~ 140 (241)
....+.... .....+.+++.+...+|+++|+|.+.+ ..|... +. .+...|++++++.|..+
T Consensus 82 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviDpl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 82 RIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVIDPLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred CCCceecccCCcccccHHHHHHHHHHHhcCCCEEEECChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 000000000 011233344445567999999996543 123321 11 23456999999999886
|
RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent. |
| >CHL00195 ycf46 Ycf46; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.1e-06 Score=81.78 Aligned_cols=70 Identities=24% Similarity=0.278 Sum_probs=49.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCcE
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEV 107 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~v 107 (241)
-+||+||||||||+++++++..+. ..++.++ ...+... . +.....+.+.++..+..+.|.+
T Consensus 261 GILL~GPpGTGKTllAkaiA~e~~----~~~~~l~-~~~l~~~------~--------vGese~~l~~~f~~A~~~~P~I 321 (489)
T CHL00195 261 GLLLVGIQGTGKSLTAKAIANDWQ----LPLLRLD-VGKLFGG------I--------VGESESRMRQMIRIAEALSPCI 321 (489)
T ss_pred eEEEECCCCCcHHHHHHHHHHHhC----CCEEEEE-hHHhccc------c--------cChHHHHHHHHHHHHHhcCCcE
Confidence 489999999999999999999864 4556666 3322110 0 1112345667778888899999
Q ss_pred EEEcCCCCH
Q 026207 108 IIVDEIGTE 116 (241)
Q Consensus 108 lilDE~~~~ 116 (241)
|++||+-..
T Consensus 322 L~IDEID~~ 330 (489)
T CHL00195 322 LWIDEIDKA 330 (489)
T ss_pred EEehhhhhh
Confidence 999998543
|
|
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=98.46 E-value=8e-07 Score=74.84 Aligned_cols=38 Identities=13% Similarity=0.284 Sum_probs=31.0
Q ss_pred eeccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 24 IIFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 24 ~~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
...+++.|+||||+|||+|+.+++..+... +.++.|++
T Consensus 37 ~~~~~l~l~G~~G~GKThL~~ai~~~~~~~-~~~~~y~~ 74 (229)
T PRK06893 37 LQQPFFYIWGGKSSGKSHLLKAVSNHYLLN-QRTAIYIP 74 (229)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHHHHc-CCCeEEee
Confidence 345678999999999999999999987544 46777776
|
|
| >TIGR02012 tigrfam_recA protein RecA | Back alignment and domain information |
|---|
Probab=98.45 E-value=4.1e-07 Score=80.08 Aligned_cols=109 Identities=15% Similarity=0.114 Sum_probs=62.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccc-hhhcCCCC--CcccHHHHHH-HHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGT-ARRMQVPE--PSLQHKVMIE-AVENH 103 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~-~~l~~ 103 (241)
++.|+||||||||||+..++...... |.+++|++ .++...... ...++. ..++.+.. ...+....+. .+...
T Consensus 57 iteI~G~~GsGKTtLaL~~~~~~~~~-g~~v~yId-~E~~~~~~~--a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~~ 132 (321)
T TIGR02012 57 IIEIYGPESSGKTTLALHAIAEAQKA-GGTAAFID-AEHALDPVY--ARKLGVDIDNLLVSQPDTGEQALEIAETLVRSG 132 (321)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc-CCcEEEEc-ccchhHHHH--HHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcc
Confidence 89999999999999988877766544 67899998 444321100 000000 01111111 1112222222 23346
Q ss_pred CCcEEEEcCCCCHHhH----------------H----HH----HHHHhCCcEEEEeecCCC
Q 026207 104 MPEVIIVDEIGTEAEA----------------H----AC----RSIAERGVMLIGTAHGEW 140 (241)
Q Consensus 104 ~p~vlilDE~~~~~d~----------------~----~~----~~~~~~g~~vi~t~H~~~ 140 (241)
+++++|+|++.+.... + .+ ..+...|+++|+|-+..+
T Consensus 133 ~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tNQvr~ 193 (321)
T TIGR02012 133 AVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFINQIRE 193 (321)
T ss_pred CCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEeccee
Confidence 7999999998755321 1 11 134677999999877654
|
This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage. |
| >KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.44 E-value=2e-07 Score=80.18 Aligned_cols=92 Identities=24% Similarity=0.379 Sum_probs=65.2
Q ss_pred cceeeEEEEEeEEeeCcceeeccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhc
Q 026207 5 RNVFLLIVKFFYALYSINKIIFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRM 84 (241)
Q Consensus 5 ~~~~~~~~r~~~~~~~~~~~~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~ 84 (241)
+++.-|.|+|.. +|.+.-.+..-+|++||||+|||-|.++++.... .....++ ..++. ...+|
T Consensus 146 KEAVILPIKFPq-lFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn----STFFSvS-SSDLv------SKWmG----- 208 (439)
T KOG0739|consen 146 KEAVILPIKFPQ-LFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN----STFFSVS-SSDLV------SKWMG----- 208 (439)
T ss_pred Hhheeecccchh-hhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC----CceEEee-hHHHH------HHHhc-----
Confidence 344445666664 6777777888899999999999999999998765 2345565 44431 11111
Q ss_pred CCCCCcccHHHHHHHHHhcCCcEEEEcCCCCH
Q 026207 85 QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTE 116 (241)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~ 116 (241)
..+...+.+++.+..+.|.+||+||+.+.
T Consensus 209 ---ESEkLVknLFemARe~kPSIIFiDEiDsl 237 (439)
T KOG0739|consen 209 ---ESEKLVKNLFEMARENKPSIIFIDEIDSL 237 (439)
T ss_pred ---cHHHHHHHHHHHHHhcCCcEEEeehhhhh
Confidence 12345677889999999999999998643
|
|
| >KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.8e-07 Score=84.63 Aligned_cols=69 Identities=25% Similarity=0.293 Sum_probs=53.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCcE
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEV 107 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~v 107 (241)
-||++||||+|||-|.++++|... -...|.. +.|+. .+-+.-+.-+.+.+++.+....|.+
T Consensus 339 GVLLvGPPGTGKTlLARAvAGEA~----VPFF~~s-GSEFd--------------Em~VGvGArRVRdLF~aAk~~APcI 399 (752)
T KOG0734|consen 339 GVLLVGPPGTGKTLLARAVAGEAG----VPFFYAS-GSEFD--------------EMFVGVGARRVRDLFAAAKARAPCI 399 (752)
T ss_pred ceEEeCCCCCchhHHHHHhhcccC----CCeEecc-ccchh--------------hhhhcccHHHHHHHHHHHHhcCCeE
Confidence 389999999999999999999753 4556666 76662 1222223457889999999999999
Q ss_pred EEEcCCCC
Q 026207 108 IIVDEIGT 115 (241)
Q Consensus 108 lilDE~~~ 115 (241)
|||||+.+
T Consensus 400 IFIDEiDa 407 (752)
T KOG0734|consen 400 IFIDEIDA 407 (752)
T ss_pred EEEechhh
Confidence 99999854
|
|
| >KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.42 E-value=5.9e-07 Score=85.48 Aligned_cols=80 Identities=26% Similarity=0.281 Sum_probs=61.8
Q ss_pred eeCcceeeccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHH
Q 026207 18 LYSINKIIFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMI 97 (241)
Q Consensus 18 ~~~~~~~~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (241)
+|+...+...-+|+.||||+|||-+++++|...+- ..+.+. +.|+. .+-+...+.+.|..+
T Consensus 697 LfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL----~FlSVK-GPELL--------------NMYVGqSE~NVR~VF 757 (953)
T KOG0736|consen 697 LFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSL----NFLSVK-GPELL--------------NMYVGQSEENVREVF 757 (953)
T ss_pred hhhccccccceeEEECCCCCchHHHHHHHHhhcee----eEEeec-CHHHH--------------HHHhcchHHHHHHHH
Confidence 44444555667999999999999999999998863 346666 66652 233344577899999
Q ss_pred HHHHhcCCcEEEEcCCCCH
Q 026207 98 EAVENHMPEVIIVDEIGTE 116 (241)
Q Consensus 98 ~~~l~~~p~vlilDE~~~~ 116 (241)
+.|....|-+||+||+.+.
T Consensus 758 erAR~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 758 ERARSAAPCVIFFDELDSL 776 (953)
T ss_pred HHhhccCCeEEEecccccc
Confidence 9999999999999998654
|
|
| >KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.6e-07 Score=85.06 Aligned_cols=70 Identities=23% Similarity=0.316 Sum_probs=53.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCcE
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEV 107 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~v 107 (241)
-+||.||||||||.|.+++++.+. -.++.|. ..|+.. .. ....+.+.+..+..+....|.+
T Consensus 225 GvLlHGPPGCGKT~lA~AiAgel~----vPf~~is-ApeivS------Gv--------SGESEkkiRelF~~A~~~aPci 285 (802)
T KOG0733|consen 225 GVLLHGPPGCGKTSLANAIAGELG----VPFLSIS-APEIVS------GV--------SGESEKKIRELFDQAKSNAPCI 285 (802)
T ss_pred ceeeeCCCCccHHHHHHHHhhhcC----CceEeec-chhhhc------cc--------CcccHHHHHHHHHHHhccCCeE
Confidence 589999999999999999999874 4567776 444311 00 0112568889999999999999
Q ss_pred EEEcCCCCH
Q 026207 108 IIVDEIGTE 116 (241)
Q Consensus 108 lilDE~~~~ 116 (241)
+|+|||.+.
T Consensus 286 vFiDeIDAI 294 (802)
T KOG0733|consen 286 VFIDEIDAI 294 (802)
T ss_pred EEeeccccc
Confidence 999998655
|
|
| >PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.1e-06 Score=74.59 Aligned_cols=137 Identities=21% Similarity=0.340 Sum_probs=70.5
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEE--EcCCcccCCCCCCccccccchhhcCCC------------CC---
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVI--VDTSNEIGGDGDIPHSAIGTARRMQVP------------EP--- 89 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~--i~~~~e~~~~~~~~~~~~~~~~~~~~~------------~~--- 89 (241)
-++.|+||||+|||||+..+...+... |.+|.. +|..+...+. . .+|.-.|+... +.
T Consensus 30 ~~iGiTG~PGaGKSTli~~l~~~~~~~-g~~VaVlAVDPSSp~tGG-A----lLGDRiRM~~~~~d~~vfIRS~atRG~l 103 (266)
T PF03308_consen 30 HVIGITGPPGAGKSTLIDALIRELRER-GKRVAVLAVDPSSPFTGG-A----LLGDRIRMQELSRDPGVFIRSMATRGSL 103 (266)
T ss_dssp EEEEEEE-TTSSHHHHHHHHHHHHHHT-T--EEEEEE-GGGGCC--------SS--GGGCHHHHTSTTEEEEEE---SSH
T ss_pred eEEEeeCCCCCcHHHHHHHHHHHHhhc-CCceEEEEECCCCCCCCC-c----ccccHHHhcCcCCCCCEEEeecCcCCCC
Confidence 389999999999999999999988765 666654 4522222111 1 11111111110 00
Q ss_pred -cc--cHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHHHHHhCCcEEEEeec--CCChhhhhcCCccccccccccEEEe--
Q 026207 90 -SL--QHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAH--GEWLENIIKNPILSDLIGGVDTVTL-- 162 (241)
Q Consensus 90 -~~--~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~~~~~~g~~vi~t~H--~~~~~~~~~~p~l~~l~~~~d~V~~-- 162 (241)
+. ....++..+.....|+||+.-++.+...-.+....+ .+++...- +.+++..- ..+-++ +|-+++
T Consensus 104 GGls~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~I~~~aD--~~v~v~~Pg~GD~iQ~~K--aGimEi---aDi~vVNK 176 (266)
T PF03308_consen 104 GGLSRATRDAVRLLDAAGFDVIIIETVGVGQSEVDIADMAD--TVVLVLVPGLGDEIQAIK--AGIMEI---ADIFVVNK 176 (266)
T ss_dssp HHHHHHHHHHHHHHHHTT-SEEEEEEESSSTHHHHHHTTSS--EEEEEEESSTCCCCCTB---TTHHHH----SEEEEE-
T ss_pred CCccHhHHHHHHHHHHcCCCEEEEeCCCCCccHHHHHHhcC--eEEEEecCCCccHHHHHh--hhhhhh---ccEEEEeC
Confidence 11 445566677778999999999998876655555443 33332222 22212111 134445 788888
Q ss_pred CChHHHHHHHHHhhh
Q 026207 163 GDEEARARRCQKSIL 177 (241)
Q Consensus 163 ~~~~~~~~~~~~~~k 177 (241)
.+.... +++.+.++
T Consensus 177 aD~~gA-~~~~~~l~ 190 (266)
T PF03308_consen 177 ADRPGA-DRTVRDLR 190 (266)
T ss_dssp -SHHHH-HHHHHHHH
T ss_pred CChHHH-HHHHHHHH
Confidence 553332 24444443
|
In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A. |
| >COG3910 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=8.9e-07 Score=71.60 Aligned_cols=31 Identities=19% Similarity=0.141 Sum_probs=26.8
Q ss_pred cceeeccEEEEEeCCCchHHHHHHHHHHhcc
Q 026207 21 INKIIFDFFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 21 ~~~~~~g~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
......+++.|+|.||+|||||+.+|+....
T Consensus 32 ~LeF~apIT~i~GENGsGKSTLLEaiA~~~~ 62 (233)
T COG3910 32 RLEFRAPITFITGENGSGKSTLLEAIAAGMG 62 (233)
T ss_pred hccccCceEEEEcCCCccHHHHHHHHHhhcc
Confidence 4556678999999999999999999998764
|
|
| >PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C | Back alignment and domain information |
|---|
Probab=98.39 E-value=7.5e-07 Score=72.46 Aligned_cols=125 Identities=18% Similarity=0.158 Sum_probs=58.3
Q ss_pred eEEeeCcceeeccEEEEEeCCCchHHHHHHHHHHhcccc---------CCCeEEEEcCCcccCCC---------CCCcc-
Q 026207 15 FYALYSINKIIFDFFLSYFRPGVGKTTVMREIARVLSDE---------FQKRVVIVDTSNEIGGD---------GDIPH- 75 (241)
Q Consensus 15 ~~~~~~~~~~~~g~vll~Gp~GsGKTTLl~~l~~~l~~~---------~g~~v~~i~~~~e~~~~---------~~~~~- 75 (241)
+..++...-....+++|.||+|+||||++..++..+... .+.+|+|++ .+..... .....
T Consensus 21 ~~~li~g~~~~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~-~E~~~~~~~~rl~~~~~~~~~~ 99 (193)
T PF13481_consen 21 LDWLIDGLLPRGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYIS-LEDSESQIARRLRALLQDYDDD 99 (193)
T ss_dssp --EEETTEE-TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEE-SSS-HHHHHHHHHHHHTTS-HH
T ss_pred cceeECCcccCCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEe-ccCCHHHHHHHHHHHhcccCCc
Confidence 344455443445699999999999999999999877642 246889997 3222100 00000
Q ss_pred ccccchh-------hcCC-CCCc----ccHHHHHHHHHh-cCCcEEEEcCCCCHHhH-----H-------HHH-HHHhCC
Q 026207 76 SAIGTAR-------RMQV-PEPS----LQHKVMIEAVEN-HMPEVIIVDEIGTEAEA-----H-------ACR-SIAERG 129 (241)
Q Consensus 76 ~~~~~~~-------~~~~-~~~~----~~~~~~~~~~l~-~~p~vlilDE~~~~~d~-----~-------~~~-~~~~~g 129 (241)
....... ++.. .+.. ...+.+.+.+.. .+|+++|||.++..... . .+. .+...|
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~ 179 (193)
T PF13481_consen 100 ANLFFVDLSNWGCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDGDENSNSAVAQLMQELKRLAKEYG 179 (193)
T ss_dssp HHHHHHHH--E-EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S-TT-HHHHHHHHHHHHHHHHHH-
T ss_pred cceEEeeccccccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 0000000 0000 0111 112334455555 68999999986544321 1 111 345679
Q ss_pred cEEEEeecCCC
Q 026207 130 VMLIGTAHGEW 140 (241)
Q Consensus 130 ~~vi~t~H~~~ 140 (241)
++++.+.|.++
T Consensus 180 ~~vi~v~H~~K 190 (193)
T PF13481_consen 180 VAVILVHHTNK 190 (193)
T ss_dssp -EEEEEEEE--
T ss_pred CEEEEEECCCC
Confidence 99999999886
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.38 E-value=5.9e-07 Score=81.05 Aligned_cols=55 Identities=13% Similarity=0.089 Sum_probs=43.8
Q ss_pred CCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHHHH----HhCCcEEEEeecCCC
Q 026207 86 VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSI----AERGVMLIGTAHGEW 140 (241)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~~~----~~~g~~vi~t~H~~~ 140 (241)
-++++.++++.+++++-..|.+++||||++.+|..++... -.--.|+++++|...
T Consensus 412 kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVSHDQg 470 (807)
T KOG0066|consen 412 KFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQG 470 (807)
T ss_pred ccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhhheeEEEecccc
Confidence 3567889999999999999999999999999998655422 112467888889876
|
|
| >PRK09354 recA recombinase A; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=9.5e-07 Score=78.49 Aligned_cols=109 Identities=17% Similarity=0.143 Sum_probs=63.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccc-hhhcCC--CCCcccHHHHH-HHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGT-ARRMQV--PEPSLQHKVMI-EAVENH 103 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~-~~~l~~ 103 (241)
++.|+||+|||||||+.+++...... |.+++|++ .++...... ...++. ..++-+ .+...++...+ ..+...
T Consensus 62 IteI~G~~GsGKTtLal~~~~~~~~~-G~~~~yId-~E~s~~~~~--a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s~ 137 (349)
T PRK09354 62 IVEIYGPESSGKTTLALHAIAEAQKA-GGTAAFID-AEHALDPVY--AKKLGVDIDNLLVSQPDTGEQALEIADTLVRSG 137 (349)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc-CCcEEEEC-CccchHHHH--HHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcC
Confidence 89999999999999999988776544 68899999 443321100 000000 001111 11111222222 223345
Q ss_pred CCcEEEEcCCCCHHh----------------HH----HH----HHHHhCCcEEEEeecCCC
Q 026207 104 MPEVIIVDEIGTEAE----------------AH----AC----RSIAERGVMLIGTAHGEW 140 (241)
Q Consensus 104 ~p~vlilDE~~~~~d----------------~~----~~----~~~~~~g~~vi~t~H~~~ 140 (241)
.++++|+|++.+... +. .+ ..+...++++|+|-+...
T Consensus 138 ~~~lIVIDSvaaL~~~~E~eg~~gd~~~~~qar~ms~~Lr~L~~~l~k~~itvI~tNQvr~ 198 (349)
T PRK09354 138 AVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGNISKSNTTVIFINQIRE 198 (349)
T ss_pred CCCEEEEeChhhhcchhhhcCCccccchhHHHHHHHHHHHHHHHHHHHcCcEEEEEEeeee
Confidence 799999999875532 01 01 134677999999877654
|
|
| >KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.4e-07 Score=85.76 Aligned_cols=71 Identities=25% Similarity=0.283 Sum_probs=54.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCcE
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEV 107 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~v 107 (241)
-||++|||||||||+.++++.... ...+++. +.|+.. ..+...+-..+..|..+....|.+
T Consensus 470 GVLlyGPPGC~KT~lAkalAne~~----~nFlsvk-gpEL~s--------------k~vGeSEr~ir~iF~kAR~~aP~I 530 (693)
T KOG0730|consen 470 GVLLYGPPGCGKTLLAKALANEAG----MNFLSVK-GPELFS--------------KYVGESERAIREVFRKARQVAPCI 530 (693)
T ss_pred eEEEECCCCcchHHHHHHHhhhhc----CCeeecc-CHHHHH--------------HhcCchHHHHHHHHHHHhhcCCeE
Confidence 489999999999999999998764 4568887 666621 122233556778899999999999
Q ss_pred EEEcCCCCHH
Q 026207 108 IIVDEIGTEA 117 (241)
Q Consensus 108 lilDE~~~~~ 117 (241)
+|+||+.+..
T Consensus 531 iFfDEiDsi~ 540 (693)
T KOG0730|consen 531 IFFDEIDALA 540 (693)
T ss_pred EehhhHHhHh
Confidence 9999986554
|
|
| >KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.34 E-value=4.4e-07 Score=84.47 Aligned_cols=70 Identities=24% Similarity=0.265 Sum_probs=53.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCcE
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEV 107 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~v 107 (241)
-||++||||||||-|.+++|..-. .+.+.+- +.|+.. ..+...+--.+..++++....|.+
T Consensus 547 GvLL~GPPGCGKTLlAKAVANEag----~NFisVK-GPELlN--------------kYVGESErAVR~vFqRAR~saPCV 607 (802)
T KOG0733|consen 547 GVLLCGPPGCGKTLLAKAVANEAG----ANFISVK-GPELLN--------------KYVGESERAVRQVFQRARASAPCV 607 (802)
T ss_pred ceEEeCCCCccHHHHHHHHhhhcc----CceEeec-CHHHHH--------------HHhhhHHHHHHHHHHHhhcCCCeE
Confidence 389999999999999999998753 5567777 666621 122233456778899999999999
Q ss_pred EEEcCCCCH
Q 026207 108 IIVDEIGTE 116 (241)
Q Consensus 108 lilDE~~~~ 116 (241)
||+||+.+.
T Consensus 608 IFFDEiDaL 616 (802)
T KOG0733|consen 608 IFFDEIDAL 616 (802)
T ss_pred EEecchhhc
Confidence 999998655
|
|
| >PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=7.1e-07 Score=81.07 Aligned_cols=69 Identities=22% Similarity=0.332 Sum_probs=46.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCcE
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEV 107 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~v 107 (241)
.++|.||||||||+++++++..... ..+.+. +.++. .. .........+..+..+....|.+
T Consensus 181 gvLL~GppGTGKT~LAkalA~~l~~----~fi~i~-~s~l~------~k--------~~ge~~~~lr~lf~~A~~~~P~I 241 (398)
T PTZ00454 181 GVLLYGPPGTGKTMLAKAVAHHTTA----TFIRVV-GSEFV------QK--------YLGEGPRMVRDVFRLARENAPSI 241 (398)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcCC----CEEEEe-hHHHH------HH--------hcchhHHHHHHHHHHHHhcCCeE
Confidence 5889999999999999999998642 334443 22221 00 01111234566777888899999
Q ss_pred EEEcCCCC
Q 026207 108 IIVDEIGT 115 (241)
Q Consensus 108 lilDE~~~ 115 (241)
|++||+..
T Consensus 242 LfIDEID~ 249 (398)
T PTZ00454 242 IFIDEVDS 249 (398)
T ss_pred EEEECHhh
Confidence 99999754
|
|
| >TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH | Back alignment and domain information |
|---|
Probab=98.31 E-value=6.7e-07 Score=83.56 Aligned_cols=69 Identities=22% Similarity=0.280 Sum_probs=47.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCcE
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEV 107 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~v 107 (241)
-++|+||||+|||++++++++... .++++++ ..++.. ..........+..+..+..+.|.+
T Consensus 90 giLL~GppGtGKT~la~alA~~~~----~~~~~i~-~~~~~~--------------~~~g~~~~~l~~~f~~a~~~~p~I 150 (495)
T TIGR01241 90 GVLLVGPPGTGKTLLAKAVAGEAG----VPFFSIS-GSDFVE--------------MFVGVGASRVRDLFEQAKKNAPCI 150 (495)
T ss_pred cEEEECCCCCCHHHHHHHHHHHcC----CCeeecc-HHHHHH--------------HHhcccHHHHHHHHHHHHhcCCCE
Confidence 489999999999999999998753 4455555 332210 001112234567788888899999
Q ss_pred EEEcCCCC
Q 026207 108 IIVDEIGT 115 (241)
Q Consensus 108 lilDE~~~ 115 (241)
|++||+..
T Consensus 151 l~iDEid~ 158 (495)
T TIGR01241 151 IFIDEIDA 158 (495)
T ss_pred EEEechhh
Confidence 99999844
|
HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH. |
| >CHL00176 ftsH cell division protein; Validated | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.1e-06 Score=82.21 Aligned_cols=70 Identities=20% Similarity=0.234 Sum_probs=48.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCcE
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEV 107 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~v 107 (241)
-++|.||||+|||++++++++... ..+++++ ..++.. .. ........+..+..+....|.+
T Consensus 218 gVLL~GPpGTGKT~LAralA~e~~----~p~i~is-~s~f~~------~~--------~g~~~~~vr~lF~~A~~~~P~I 278 (638)
T CHL00176 218 GVLLVGPPGTGKTLLAKAIAGEAE----VPFFSIS-GSEFVE------MF--------VGVGAARVRDLFKKAKENSPCI 278 (638)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC----CCeeecc-HHHHHH------Hh--------hhhhHHHHHHHHHHHhcCCCcE
Confidence 489999999999999999998752 4556665 333210 00 0011234566788888899999
Q ss_pred EEEcCCCCH
Q 026207 108 IIVDEIGTE 116 (241)
Q Consensus 108 lilDE~~~~ 116 (241)
|+|||+...
T Consensus 279 LfIDEID~l 287 (638)
T CHL00176 279 VFIDEIDAV 287 (638)
T ss_pred EEEecchhh
Confidence 999999543
|
|
| >KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.4e-06 Score=72.14 Aligned_cols=70 Identities=24% Similarity=0.366 Sum_probs=50.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCcE
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEV 107 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~v 107 (241)
-+|+.||||||||.|.++++...... .+.+- ++|+ .+..+| .+--..+..+..+....|.+
T Consensus 191 gvllygppg~gktml~kava~~t~a~----firvv-gsef------vqkylg--------egprmvrdvfrlakenapsi 251 (408)
T KOG0727|consen 191 GVLLYGPPGTGKTMLAKAVANHTTAA----FIRVV-GSEF------VQKYLG--------EGPRMVRDVFRLAKENAPSI 251 (408)
T ss_pred ceEEeCCCCCcHHHHHHHHhhccchh----eeeec-cHHH------HHHHhc--------cCcHHHHHHHHHHhccCCcE
Confidence 48999999999999999999876543 23333 5555 222221 12234577888999999999
Q ss_pred EEEcCCCCH
Q 026207 108 IIVDEIGTE 116 (241)
Q Consensus 108 lilDE~~~~ 116 (241)
||+||+.+.
T Consensus 252 ifideidai 260 (408)
T KOG0727|consen 252 IFIDEIDAI 260 (408)
T ss_pred EEeehhhhH
Confidence 999998654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 241 | |||
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 2e-09 |
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 Length = 178 | Back alignment and structure |
|---|
Score = 54.6 bits (131), Expect = 2e-09
Identities = 23/142 (16%), Positives = 48/142 (33%), Gaps = 31/142 (21%)
Query: 34 RPGVGKTTVMREIARVLSDEFQK-----------------RVVIVDTSNEI------GGD 70
PGVGKTT++++I L R++ + +I
Sbjct: 8 EPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSK 67
Query: 71 GDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIG------TEAEAHACRS 124
+ + ++ P L+ + +VII+DEIG + +
Sbjct: 68 KLVGSYGVNVQYFEELAIPILER--AYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQI 125
Query: 125 IAERGVMLIGTAHGEWLENIIK 146
+ + V ++ T + ++K
Sbjct: 126 MHDPNVNVVATIPIRDVHPLVK 147
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 241 | |||
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 99.77 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 99.76 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 99.76 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 99.76 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 99.75 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 99.74 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 99.73 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 99.73 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 99.72 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 99.72 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 99.72 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 99.72 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 99.72 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 99.72 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 99.71 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 99.71 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 99.71 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 99.71 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.7 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 99.7 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 99.7 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 99.7 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 99.7 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 99.7 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 99.69 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 99.68 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 99.67 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 99.66 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.65 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 99.65 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 99.64 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 99.64 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 99.62 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 99.62 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 99.62 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.59 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 99.59 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 99.59 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.59 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 99.58 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 99.58 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 99.57 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 99.57 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.56 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.56 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.56 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.55 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 99.55 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.52 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 99.51 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 99.51 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.5 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.5 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 99.48 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 99.48 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 99.46 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.45 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 99.44 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 99.43 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 99.4 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.39 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 99.37 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.37 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.36 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.36 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.35 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.34 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 99.34 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.33 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.32 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.32 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 99.32 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.31 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 99.31 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 99.27 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 99.27 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 99.25 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.24 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.24 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.23 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.22 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.2 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.12 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.09 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.09 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.06 | |
| 2zts_A | 251 | Putative uncharacterized protein PH0186; KAIC like | 99.03 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.02 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 98.98 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 98.97 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 98.95 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 98.94 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 98.93 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 98.92 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 98.92 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.92 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 98.92 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 98.91 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 98.9 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 98.89 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 98.88 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 98.88 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 98.86 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 98.86 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 98.83 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 98.83 | |
| 3io5_A | 333 | Recombination and repair protein; storage dimer, i | 98.82 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.77 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 98.75 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 98.73 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 98.72 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 98.7 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 98.69 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 98.67 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 98.66 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.64 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 98.64 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 98.62 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 98.6 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 98.6 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 98.59 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 98.58 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 98.56 | |
| 4b4t_I | 437 | 26S protease regulatory subunit 4 homolog; hydrola | 98.56 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 98.55 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 98.55 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 98.54 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 98.54 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 98.53 | |
| 4b4t_H | 467 | 26S protease regulatory subunit 7 homolog; hydrola | 98.52 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 98.5 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 98.5 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 98.49 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.48 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 98.45 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 98.45 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 98.45 | |
| 1q57_A | 503 | DNA primase/helicase; dntpase, DNA replication, tr | 98.45 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 98.43 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 98.42 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 98.41 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 98.41 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 98.39 | |
| 2r8r_A | 228 | Sensor protein; KDPD, PFAM02702, MCSG, structural | 98.38 | |
| 2zan_A | 444 | Vacuolar protein sorting-associating protein 4B; S | 98.38 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.37 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 98.36 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 98.36 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 98.35 | |
| 1xx6_A | 191 | Thymidine kinase; NESG, northeast structural genom | 98.35 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.33 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 98.32 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 98.31 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.31 | |
| 2qp9_X | 355 | Vacuolar protein sorting-associated protein 4; ATP | 98.29 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.29 | |
| 3cf2_A | 806 | TER ATPase, transitional endoplasmic reticulum ATP | 98.28 | |
| 2j9r_A | 214 | Thymidine kinase; TK1, DNK, lasso, transferase, AT | 98.28 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 98.27 | |
| 1w4r_A | 195 | Thymidine kinase; type II, human, cytosolic, phosp | 98.27 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 98.27 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 98.26 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 98.25 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 98.24 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 98.24 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 98.22 | |
| 2orv_A | 234 | Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 | 98.22 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 98.2 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 98.19 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 98.19 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 98.19 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 98.19 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 98.15 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 98.15 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 98.12 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 98.12 | |
| 3cf2_A | 806 | TER ATPase, transitional endoplasmic reticulum ATP | 98.11 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 98.09 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.09 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 98.07 | |
| 2c9o_A | 456 | RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP- | 98.06 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 98.06 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 98.04 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 98.04 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 98.03 | |
| 3hu3_A | 489 | Transitional endoplasmic reticulum ATPase; VCP, tr | 98.03 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.03 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 98.02 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 98.02 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 98.0 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.0 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 97.98 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 97.94 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 97.94 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 97.92 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 97.91 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 97.9 | |
| 3pvs_A | 447 | Replication-associated recombination protein A; ma | 97.9 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 97.9 | |
| 3u61_B | 324 | DNA polymerase accessory protein 44; AAA+, ATP hyd | 97.89 | |
| 3pxi_A | 758 | Negative regulator of genetic competence CLPC/MEC; | 97.89 | |
| 1sxj_A | 516 | Activator 1 95 kDa subunit; clamp loader, processi | 97.88 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 97.87 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 97.87 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 97.87 | |
| 3pfi_A | 338 | Holliday junction ATP-dependent DNA helicase RUVB; | 97.87 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.86 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 97.86 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 97.85 | |
| 1um8_A | 376 | ATP-dependent CLP protease ATP-binding subunit CL; | 97.84 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 97.84 | |
| 3e2i_A | 219 | Thymidine kinase; Zn-binding, ATP-binding, DNA syn | 97.84 | |
| 1g5t_A | 196 | COB(I)alamin adenosyltransferase; P-loop protein, | 97.83 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.82 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 97.82 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 97.81 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.81 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 97.8 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 97.78 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 97.76 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 97.76 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 97.75 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.74 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 97.74 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 97.73 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 97.73 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 97.72 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 97.71 | |
| 1hqc_A | 324 | RUVB; extended AAA-ATPase domain, complex with nuc | 97.71 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.71 | |
| 1qvr_A | 854 | CLPB protein; coiled coil, AAA ATPase, chaperone; | 97.7 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 97.7 | |
| 3pxg_A | 468 | Negative regulator of genetic competence CLPC/MEC; | 97.68 | |
| 1r6b_X | 758 | CLPA protein; AAA+, N-terminal domain, CLPS, cryst | 97.68 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.68 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 97.67 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.65 | |
| 1ojl_A | 304 | Transcriptional regulatory protein ZRAR; response | 97.64 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 97.64 | |
| 3hws_A | 363 | ATP-dependent CLP protease ATP-binding subunit CL; | 97.64 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 97.62 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.62 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 97.61 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.61 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 97.6 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 97.59 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 97.58 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.57 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 97.56 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 97.56 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 97.54 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 97.54 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 97.53 | |
| 2r2a_A | 199 | Uncharacterized protein; zonular occludens toxin, | 97.53 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.52 | |
| 1qvr_A | 854 | CLPB protein; coiled coil, AAA ATPase, chaperone; | 97.5 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.5 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 97.49 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 97.49 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 97.49 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.48 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 97.47 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 97.47 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 97.47 | |
| 1jr3_A | 373 | DNA polymerase III subunit gamma; processivity, pr | 97.46 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 97.46 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 97.45 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 97.45 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 97.44 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.44 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 97.43 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 97.43 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 97.42 | |
| 1sxj_B | 323 | Activator 1 37 kDa subunit; clamp loader, processi | 97.42 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 97.42 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 97.4 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 97.4 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 97.39 | |
| 3pxi_A | 758 | Negative regulator of genetic competence CLPC/MEC; | 97.39 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 97.39 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 97.39 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 97.38 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.38 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 97.38 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 97.38 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 97.36 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 97.36 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 97.36 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 97.35 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 97.35 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 97.35 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 97.35 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 97.35 | |
| 1r6b_X | 758 | CLPA protein; AAA+, N-terminal domain, CLPS, cryst | 97.35 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 97.34 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 97.33 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 97.33 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 97.33 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 97.32 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 97.32 | |
| 2xxa_A | 433 | Signal recognition particle protein; protein trans | 97.31 | |
| 2chq_A | 319 | Replication factor C small subunit; DNA-binding pr | 97.31 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 97.3 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 97.3 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 97.29 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 97.28 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 97.28 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 97.26 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 97.26 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 97.25 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 97.23 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 97.23 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 97.23 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 97.23 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 97.22 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 97.21 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 97.21 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 97.21 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 97.2 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 97.2 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 97.2 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 97.2 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 97.19 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 97.19 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 97.19 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 97.19 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 97.19 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.19 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 97.19 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 97.17 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 97.17 | |
| 1w5s_A | 412 | Origin recognition complex subunit 2 ORC2; replica | 97.16 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 97.15 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 97.15 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 97.15 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 97.14 | |
| 2bjv_A | 265 | PSP operon transcriptional activator; AAA, transcr | 97.14 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 97.13 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 97.13 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 97.12 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 97.12 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 97.11 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 97.11 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 97.07 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 97.07 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 97.05 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 97.05 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 97.05 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 97.05 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 97.04 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 97.02 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 97.02 | |
| 1tue_A | 212 | Replication protein E1; helicase, replication, E1E | 97.02 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 97.02 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 97.01 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 97.0 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 96.99 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 96.99 | |
| 4edh_A | 213 | DTMP kinase, thymidylate kinase; structural genomi | 96.96 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 96.93 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 96.92 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 96.91 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 96.91 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 96.91 | |
| 1yrb_A | 262 | ATP(GTP)binding protein; GTPase, P-loop, rossman f | 96.87 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 96.86 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 96.86 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 96.83 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 96.83 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 96.82 | |
| 2r44_A | 331 | Uncharacterized protein; putative ATPase, structur | 96.81 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 96.79 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 96.77 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 96.76 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 96.76 | |
| 1c9k_A | 180 | COBU, adenosylcobinamide kinase; alpha/beta struct | 96.76 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 96.75 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 96.75 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 96.74 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 96.72 | |
| 3e1s_A | 574 | Exodeoxyribonuclease V, subunit RECD; alpha and be | 96.72 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 96.71 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 96.71 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 96.7 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 96.7 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 96.7 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 96.69 | |
| 3lv8_A | 236 | DTMP kinase, thymidylate kinase; structural genomi | 96.69 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 96.69 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 96.69 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 96.68 | |
| 1g41_A | 444 | Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep | 96.68 | |
| 1g8p_A | 350 | Magnesium-chelatase 38 kDa subunit; parallel beta | 96.67 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 96.67 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 96.67 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 96.67 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 96.65 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 96.64 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 96.64 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 96.64 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 96.62 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 96.62 | |
| 4b3f_X | 646 | DNA-binding protein smubp-2; hydrolase, helicase; | 96.61 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 96.6 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 96.59 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 96.59 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 96.59 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 96.59 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 96.58 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 96.57 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 96.57 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 96.55 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 96.55 | |
| 4tmk_A | 213 | Protein (thymidylate kinase); ATP:DTMP phosphotran | 96.55 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 96.54 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 96.54 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 96.54 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 96.54 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 96.53 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 96.53 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 96.53 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 96.52 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 96.52 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 96.52 | |
| 3v9p_A | 227 | DTMP kinase, thymidylate kinase; ssgcid, STRU geno | 96.52 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 96.51 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 96.51 | |
| 2fna_A | 357 | Conserved hypothetical protein; structural genomic | 96.5 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 96.5 | |
| 1iqp_A | 327 | RFCS; clamp loader, extended AAA-ATPase domain, co | 96.49 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 96.49 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 96.49 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 96.49 | |
| 3hjn_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 96.48 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 96.48 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 96.48 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 96.48 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 96.47 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 96.46 | |
| 3vkw_A | 446 | Replicase large subunit; alpha/beta domain, helica | 96.46 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 96.46 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 96.46 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 96.44 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 96.43 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 96.43 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 96.42 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 96.4 | |
| 1z6t_A | 591 | APAF-1, apoptotic protease activating factor 1; ca | 96.4 | |
| 3nbx_X | 500 | ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu | 96.4 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 96.39 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 96.38 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 96.38 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 96.38 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 96.38 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 96.37 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 96.36 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 96.36 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 96.35 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 96.35 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 96.35 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 96.35 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 96.34 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 96.34 | |
| 4hlc_A | 205 | DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri | 96.34 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 96.32 | |
| 3upu_A | 459 | ATP-dependent DNA helicase DDA; RECA-like domain, | 96.32 | |
| 2fz4_A | 237 | DNA repair protein RAD25; RECA-like domain, DNA da | 96.31 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 96.31 | |
| 3eph_A | 409 | TRNA isopentenyltransferase; transferase, alternat | 96.31 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 96.3 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 96.3 | |
| 2gk6_A | 624 | Regulator of nonsense transcripts 1; UPF1, helicas | 96.3 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 96.3 | |
| 4dzz_A | 206 | Plasmid partitioning protein PARF; deviant walker | 96.29 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 96.28 | |
| 2qen_A | 350 | Walker-type ATPase; unknown function; HET: ADP; 2. | 96.28 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 96.28 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 96.28 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 96.28 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 96.27 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 96.27 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 96.26 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 96.26 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 96.26 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 96.25 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 96.24 | |
| 1u0j_A | 267 | DNA replication protein; AAA+ protein, P-loop atpa | 96.24 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 96.24 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 96.23 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 96.23 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 96.23 | |
| 3tqf_A | 181 | HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co | 96.22 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 96.22 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 96.22 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 96.21 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 96.21 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 96.2 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 96.2 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 96.2 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 96.19 |
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.4e-19 Score=153.70 Aligned_cols=124 Identities=19% Similarity=0.196 Sum_probs=85.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC--------------------eEEEEcCCccc-CCCCCCccc------ccc-
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK--------------------RVVIVDTSNEI-GGDGDIPHS------AIG- 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~--------------------~v~~i~~~~e~-~~~~~~~~~------~~~- 79 (241)
+++|+||||||||||++.+++.+++..|. ++.|+.+..+. .....+... ..+
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~ 115 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKL 115 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHcCC
Confidence 89999999999999999999999877432 12333321110 000000000 000
Q ss_pred -------c--------------hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHH-hCCc
Q 026207 80 -------T--------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIA-ERGV 130 (241)
Q Consensus 80 -------~--------------~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~-~~g~ 130 (241)
+ ......+|+|++|++.+++++.++|+++|+|||++++|+.... ... +.|.
T Consensus 116 ~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~ 195 (275)
T 3gfo_A 116 PEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGI 195 (275)
T ss_dssp CHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCC
Confidence 0 0112346778899999999999999999999999999995432 333 4499
Q ss_pred EEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 131 MLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 131 ~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++|+++|..+ .+..+ ||+|++
T Consensus 196 tvi~vtHdl~--------~~~~~---~drv~~ 216 (275)
T 3gfo_A 196 TIIIATHDID--------IVPLY---CDNVFV 216 (275)
T ss_dssp EEEEEESCCS--------SGGGG---CSEEEE
T ss_pred EEEEEecCHH--------HHHHh---CCEEEE
Confidence 9999999997 67777 898887
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=99.76 E-value=9e-19 Score=154.98 Aligned_cols=121 Identities=20% Similarity=0.266 Sum_probs=84.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCccc-------C---CC-CCC-------ccc----cc--c----
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEI-------G---GD-GDI-------PHS----AI--G---- 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~-------~---~~-~~~-------~~~----~~--~---- 79 (241)
++.|+||||||||||+++|++..+++.|. ++++ +.++ . .. +.+ ++. ++ +
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~~p~~G~--I~i~-G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~ 108 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFEQPDSGE--ISLS-GKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNG 108 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSSCCSEEE--EEET-TEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTS
T ss_pred EEEEECCCCchHHHHHHHHhcCCCCCCcE--EEEC-CEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHc
Confidence 89999999999999999999999887433 3332 1111 0 00 000 000 00 0
Q ss_pred ---------c--------------hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------H-HHhC
Q 026207 80 ---------T--------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------S-IAER 128 (241)
Q Consensus 80 ---------~--------------~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~-~~~~ 128 (241)
+ .+....+|+|++|++.+++++..+|+++++|||++++|+.... . .++.
T Consensus 109 ~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~ 188 (359)
T 3fvq_A 109 KGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRAN 188 (359)
T ss_dssp SCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHT
T ss_pred CCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhC
Confidence 0 0112346778899999999999999999999999999994322 2 2456
Q ss_pred CcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 129 GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 129 g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
|.++|+++|..+ .+..+ ||+|++
T Consensus 189 g~tvi~vTHd~~--------ea~~~---aDri~v 211 (359)
T 3fvq_A 189 GKSAVFVSHDRE--------EALQY---ADRIAV 211 (359)
T ss_dssp TCEEEEECCCHH--------HHHHH---CSEEEE
T ss_pred CCEEEEEeCCHH--------HHHHH---CCEEEE
Confidence 999999999986 55666 888877
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=99.76 E-value=5.9e-19 Score=156.35 Aligned_cols=151 Identities=13% Similarity=0.165 Sum_probs=96.4
Q ss_pred CccccceeeEEEEE--eEEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCC-------------------
Q 026207 1 MLRLRNVFLLIVKF--FYALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------- 56 (241)
Q Consensus 1 ~~~~~~~~~~~~r~--~~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------- 56 (241)
||+++|+..-.-.. -..++..+ .+..| ++.|+||||||||||++++++..+++.|.
T Consensus 24 mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~ 103 (366)
T 3tui_C 24 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103 (366)
T ss_dssp CEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHH
T ss_pred eEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 67788875322100 01123332 23343 89999999999999999999999877432
Q ss_pred --eEEEEcCCcccCCCCCCccc------c------------------ccc----hhhcCCCCCcccHHHHHHHHHhcCCc
Q 026207 57 --RVVIVDTSNEIGGDGDIPHS------A------------------IGT----ARRMQVPEPSLQHKVMIEAVENHMPE 106 (241)
Q Consensus 57 --~v~~i~~~~e~~~~~~~~~~------~------------------~~~----~~~~~~~~~~~~~~~~~~~~l~~~p~ 106 (241)
++.++.+...+.....+... . ++. ......+|+|++|++.+++++.++|+
T Consensus 104 r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~ 183 (366)
T 3tui_C 104 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPK 183 (366)
T ss_dssp HTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCS
T ss_pred hCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 23333322111110000000 0 000 01123467788999999999999999
Q ss_pred EEEEcCCCCHHhHHHHH-------HH-HhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 107 VIIVDEIGTEAEAHACR-------SI-AERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 107 vlilDE~~~~~d~~~~~-------~~-~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+|++|||++++|+.... .. .+.|.++|+++|..+ .+..+ ||+|++
T Consensus 184 lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~--------~~~~~---aDrv~v 236 (366)
T 3tui_C 184 VLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMD--------VVKRI---CDCVAV 236 (366)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH--------HHHHH---CSEEEE
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH--------HHHHh---CCEEEE
Confidence 99999999999995432 33 345999999999987 55666 888776
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.76 E-value=3.1e-19 Score=151.49 Aligned_cols=149 Identities=15% Similarity=0.125 Sum_probs=95.6
Q ss_pred CccccceeeEEEEEeEEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCC-----------------eEEE
Q 026207 1 MLRLRNVFLLIVKFFYALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK-----------------RVVI 60 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-----------------~v~~ 60 (241)
||+++|+..-. .-+.++..+ .+..| +++|+||||||||||++.|++.+++..|. ++.|
T Consensus 15 ~l~i~~l~~~y--~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~ 92 (256)
T 1vpl_A 15 AVVVKDLRKRI--GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISY 92 (256)
T ss_dssp CEEEEEEEEEE--TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEE
T ss_pred eEEEEEEEEEE--CCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEE
Confidence 56777775211 011233332 23344 89999999999999999999999876332 2334
Q ss_pred EcCCcccCCCCCCccc------ccc--------c----h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcC
Q 026207 61 VDTSNEIGGDGDIPHS------AIG--------T----A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDE 112 (241)
Q Consensus 61 i~~~~e~~~~~~~~~~------~~~--------~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE 112 (241)
+.+...+.....+... ..+ . . .....+|+|++|+..+++++..+|+++++||
T Consensus 93 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDE 172 (256)
T 1vpl_A 93 LPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDE 172 (256)
T ss_dssp ECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred EcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 4332221111000000 000 0 0 1123467788999999999999999999999
Q ss_pred CCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 113 IGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 113 ~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
|++++|+.... ...+.|.++|+++|..+ .+..+ ||++++
T Consensus 173 Pts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~--------~~~~~---~d~v~~ 218 (256)
T 1vpl_A 173 PTSGLDVLNAREVRKILKQASQEGLTILVSSHNML--------EVEFL---CDRIAL 218 (256)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH--------HHTTT---CSEEEE
T ss_pred CccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH--------HHHHH---CCEEEE
Confidence 99999995432 33446899999999876 55666 888877
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.1e-19 Score=152.31 Aligned_cols=124 Identities=15% Similarity=0.180 Sum_probs=84.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCCCCCcc------------cc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGDGDIPH------------SA 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~~~~~~------------~~ 77 (241)
++.|+||||||||||++.+++.++++.|. .+.++.+...+.....+.. ..
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~ 118 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQD 118 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTSCSTTH
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhcCcHHH
Confidence 79999999999999999999999887543 1223322211110000000 00
Q ss_pred ----------ccc----hhhcCCCCCcccHHHHHHHHHhc------CCcEEEEcCCCCHHhHHHHH-------HHH-hCC
Q 026207 78 ----------IGT----ARRMQVPEPSLQHKVMIEAVENH------MPEVIIVDEIGTEAEAHACR-------SIA-ERG 129 (241)
Q Consensus 78 ----------~~~----~~~~~~~~~~~~~~~~~~~~l~~------~p~vlilDE~~~~~d~~~~~-------~~~-~~g 129 (241)
.+. ......+|+|++|++.+++++.+ +|+++++|||++++|+.... ... +.|
T Consensus 119 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~ 198 (266)
T 4g1u_C 119 RQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEP 198 (266)
T ss_dssp HHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCC
Confidence 000 01123467788999999999999 99999999999999994332 333 346
Q ss_pred cEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 130 VMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 130 ~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+++|+++|..+ .+..+ ||+|++
T Consensus 199 ~tvi~vtHdl~--------~~~~~---~d~v~v 220 (266)
T 4g1u_C 199 LAVCCVLHDLN--------LAALY---ADRIML 220 (266)
T ss_dssp EEEEEECSCHH--------HHHHH---CSEEEE
T ss_pred CEEEEEEcCHH--------HHHHh---CCEEEE
Confidence 79999999886 55666 888887
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=99.74 E-value=2.3e-18 Score=153.41 Aligned_cols=124 Identities=20% Similarity=0.211 Sum_probs=85.1
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC----------------eEEEEcCCcccCCCCCCccc-ccc-----------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK----------------RVVIVDTSNEIGGDGDIPHS-AIG----------- 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------~v~~i~~~~e~~~~~~~~~~-~~~----------- 79 (241)
++.|+||||||||||+++|+|..+++.|. ++.++.+...+.....+... ..+
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~ 110 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVI 110 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHH
T ss_pred EEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHH
Confidence 89999999999999999999999887432 13333322211110000000 000
Q ss_pred --c--------------hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HH-HhCCcEEEEe
Q 026207 80 --T--------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SI-AERGVMLIGT 135 (241)
Q Consensus 80 --~--------------~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~-~~~g~~vi~t 135 (241)
+ .+....+|++++|++.+++++..+|+++++|||++.+|+.... .. .+.|.++|.+
T Consensus 111 ~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~v 190 (381)
T 3rlf_A 111 NQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYV 190 (381)
T ss_dssp HHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEE
T ss_pred HHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 0 0112346778899999999999999999999999999984322 33 3449999999
Q ss_pred ecCCChhhhhcCCccccccccccEEEe
Q 026207 136 AHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 136 ~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+|..+ .+..+ ||+|++
T Consensus 191 THd~~--------ea~~~---aDri~v 206 (381)
T 3rlf_A 191 THDQV--------EAMTL---ADKIVV 206 (381)
T ss_dssp CSCHH--------HHHHH---CSEEEE
T ss_pred ECCHH--------HHHHh---CCEEEE
Confidence 99886 55666 888877
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.9e-18 Score=147.14 Aligned_cols=149 Identities=13% Similarity=0.099 Sum_probs=94.0
Q ss_pred CccccceeeEEEEEeEEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCC--------------------e
Q 026207 1 MLRLRNVFLLIVKFFYALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK--------------------R 57 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~--------------------~ 57 (241)
||+++|+..-. .-+.++..+ .+..| ++.|+||||||||||++.+++.++++.|. +
T Consensus 24 ~l~i~~l~~~y--~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~ 101 (263)
T 2olj_A 24 MIDVHQLKKSF--GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREE 101 (263)
T ss_dssp SEEEEEEEEEE--TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHH
T ss_pred eEEEEeEEEEE--CCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCc
Confidence 46777775211 001233332 23333 89999999999999999999999876332 1
Q ss_pred EEEEcCCcccCCCCCCccc-cc------c--------c----h----------hhcCCCCCcccHHHHHHHHHhcCCcEE
Q 026207 58 VVIVDTSNEIGGDGDIPHS-AI------G--------T----A----------RRMQVPEPSLQHKVMIEAVENHMPEVI 108 (241)
Q Consensus 58 v~~i~~~~e~~~~~~~~~~-~~------~--------~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~vl 108 (241)
+.|+.+...+.....+... .. + . . .....+|+|++|++.+++++..+|+++
T Consensus 102 i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~ll 181 (263)
T 2olj_A 102 VGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIM 181 (263)
T ss_dssp EEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred EEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEE
Confidence 3333322111110000000 00 0 0 0 012235678899999999999999999
Q ss_pred EEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 109 IVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 109 ilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++|||++++|+.... ...+.|.++|+++|..+ .+..+ ||+|++
T Consensus 182 lLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~--------~~~~~---~d~v~~ 231 (263)
T 2olj_A 182 LFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMG--------FAREV---GDRVLF 231 (263)
T ss_dssp EEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHH--------HHHHH---CSEEEE
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH--------HHHHh---CCEEEE
Confidence 999999999995432 33445899999999876 45556 888876
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=4.2e-18 Score=151.60 Aligned_cols=124 Identities=19% Similarity=0.197 Sum_probs=83.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC----------------eEEEEcCCcccCCCCC-------------Ccccc-
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK----------------RVVIVDTSNEIGGDGD-------------IPHSA- 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------~v~~i~~~~e~~~~~~-------------~~~~~- 77 (241)
++.|+||||||||||+++|++..+++.|. ++.|+.+...+..... .+...
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~ 118 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEI 118 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--CCCHHHH
T ss_pred EEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHH
Confidence 89999999999999999999999877332 1333332211110000 00000
Q ss_pred ----------ccc----hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HH-HhCCcEEEEe
Q 026207 78 ----------IGT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SI-AERGVMLIGT 135 (241)
Q Consensus 78 ----------~~~----~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~-~~~g~~vi~t 135 (241)
++. .+....+|+|++|++.+++++..+|+++++|||++++|+.... .. .+.|.++|.+
T Consensus 119 ~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~v 198 (372)
T 1v43_A 119 DKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYV 198 (372)
T ss_dssp HHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 000 0123447889999999999999999999999999999994332 32 2348999999
Q ss_pred ecCCChhhhhcCCccccccccccEEEe
Q 026207 136 AHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 136 ~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+|... .+..+ ||+|++
T Consensus 199 THd~~--------~a~~~---adri~v 214 (372)
T 1v43_A 199 THDQV--------EAMTM---GDRIAV 214 (372)
T ss_dssp ESCHH--------HHHHH---CSEEEE
T ss_pred eCCHH--------HHHHh---CCEEEE
Confidence 99876 45556 787776
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.72 E-value=9.6e-18 Score=142.06 Aligned_cols=128 Identities=12% Similarity=0.102 Sum_probs=88.8
Q ss_pred eecc-EEEEEeCCCchHHHHHHHHHHhccccCC-----CeEEEEcCCcccCCCCCC---------c--------ccc---
Q 026207 24 IIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQ-----KRVVIVDTSNEIGGDGDI---------P--------HSA--- 77 (241)
Q Consensus 24 ~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g-----~~v~~i~~~~e~~~~~~~---------~--------~~~--- 77 (241)
+..| +++|+||||||||||++.+++.++++.| .++.|+.+...+.....+ . ...
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ 107 (253)
T 2nq2_C 28 LNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQ 107 (253)
T ss_dssp EETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHH
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHH
Confidence 3344 8999999999999999999999987744 245677644332211000 0 000
Q ss_pred --------ccc----hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhC-CcEEEEeec
Q 026207 78 --------IGT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAER-GVMLIGTAH 137 (241)
Q Consensus 78 --------~~~----~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~-g~~vi~t~H 137 (241)
.+. ......+|+|++|+..+++++..+|+++++|||++++|+.... ...+. |.++|+++|
T Consensus 108 ~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtH 187 (253)
T 2nq2_C 108 VAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTH 187 (253)
T ss_dssp HHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEES
T ss_pred HHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 000 0112346778899999999999999999999999999995432 33334 899999999
Q ss_pred CCChhhhhcCCccccccccccEEEe
Q 026207 138 GEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 138 ~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
..+ .+..+ ||++++
T Consensus 188 d~~--------~~~~~---~d~v~~ 201 (253)
T 2nq2_C 188 QPN--------QVVAI---ANKTLL 201 (253)
T ss_dssp CHH--------HHHHH---CSEEEE
T ss_pred CHH--------HHHHh---CCEEEE
Confidence 876 45556 788776
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.72 E-value=2.8e-18 Score=144.32 Aligned_cols=143 Identities=15% Similarity=0.146 Sum_probs=93.6
Q ss_pred CccccceeeEEEEEeEEeeCcc---eeeccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccC------CC-
Q 026207 1 MLRLRNVFLLIVKFFYALYSIN---KIIFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIG------GD- 70 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~---~~~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~------~~- 70 (241)
|++++|+..-. - ..+... -.. .++.|+||||||||||++.+++.++++.|. ++++ +.++. ..
T Consensus 1 ml~~~~l~~~y---~-~~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~--i~~~-g~~~~~~~~~~~~i 72 (240)
T 2onk_A 1 MFLKVRAEKRL---G-NFRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGE--VRLN-GADITPLPPERRGI 72 (240)
T ss_dssp CCEEEEEEEEE---T-TEEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEE--EEET-TEECTTSCTTTSCC
T ss_pred CEEEEEEEEEe---C-CEEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceE--EEEC-CEECCcCchhhCcE
Confidence 78888886321 1 112222 123 799999999999999999999999877443 3343 21110 00
Q ss_pred CCCccc-----------c--c-----c------ch--------------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcC
Q 026207 71 GDIPHS-----------A--I-----G------TA--------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDE 112 (241)
Q Consensus 71 ~~~~~~-----------~--~-----~------~~--------------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE 112 (241)
+.+++. . . + .+ .....+|+|++|+..+++++.++|+++++||
T Consensus 73 ~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDE 152 (240)
T 2onk_A 73 GFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDE 152 (240)
T ss_dssp BCCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEES
T ss_pred EEEcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 111110 0 0 0 00 0122356678999999999999999999999
Q ss_pred CCCHHhHHHHH-------HHH-hCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 113 IGTEAEAHACR-------SIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 113 ~~~~~d~~~~~-------~~~-~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
|++++|+.... ... +.|.++|+++|..+ .+..+ ||++++
T Consensus 153 Pts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~--------~~~~~---~d~i~~ 199 (240)
T 2onk_A 153 PLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI--------EAAML---ADEVAV 199 (240)
T ss_dssp TTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHH--------HHHHH---CSEEEE
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--------HHHHh---CCEEEE
Confidence 99999995432 332 34899999999875 45556 888876
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.72 E-value=7.5e-18 Score=149.27 Aligned_cols=149 Identities=15% Similarity=0.117 Sum_probs=94.0
Q ss_pred CccccceeeEEEEEeEEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCC----------------eEEEE
Q 026207 1 MLRLRNVFLLIVKFFYALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK----------------RVVIV 61 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------~v~~i 61 (241)
||+++|+..-. .-..++... .+..| ++.|.||||||||||+++|++..+++.|. ++.|+
T Consensus 3 ~l~~~~l~~~y--~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v 80 (359)
T 2yyz_A 3 SIRVVNLKKYF--GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMV 80 (359)
T ss_dssp CEEEEEEEEEE--TTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEE
T ss_pred EEEEEEEEEEE--CCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEE
Confidence 47777775211 001223332 23333 89999999999999999999999877332 23344
Q ss_pred cCCcccCCCCCCccc-cc-----c--------ch--------------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCC
Q 026207 62 DTSNEIGGDGDIPHS-AI-----G--------TA--------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEI 113 (241)
Q Consensus 62 ~~~~e~~~~~~~~~~-~~-----~--------~~--------------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~ 113 (241)
.+...+.....+... .. + +. +....+|+|++|++.+++++..+|+++++|||
T Consensus 81 ~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP 160 (359)
T 2yyz_A 81 FQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEP 160 (359)
T ss_dssp CSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred ecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 322211110000000 00 0 00 11234677889999999999999999999999
Q ss_pred CCHHhHHHHH-------HH-HhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 114 GTEAEAHACR-------SI-AERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 114 ~~~~d~~~~~-------~~-~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++++|+.... .. .+.|.++|.++|..+ .+..+ ||+|++
T Consensus 161 ~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~--------~~~~~---adri~v 206 (359)
T 2yyz_A 161 LSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA--------EAMTM---ASRIAV 206 (359)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH--------HHHHH---CSEEEE
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH--------HHHHh---CCEEEE
Confidence 9999995332 22 234899999999876 45556 787776
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1e-17 Score=139.39 Aligned_cols=147 Identities=16% Similarity=0.147 Sum_probs=92.5
Q ss_pred CccccceeeEEEEEe-EEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCC--------------------
Q 026207 1 MLRLRNVFLLIVKFF-YALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK-------------------- 56 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~-~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-------------------- 56 (241)
||+++|+.. ++- +.++..+ .+..| ++.|+||||||||||++.+++.++++.|.
T Consensus 4 ~l~~~~l~~---~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (224)
T 2pcj_A 4 ILRAENIKK---VIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLR 80 (224)
T ss_dssp EEEEEEEEE---EETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHH
T ss_pred EEEEEeEEE---EECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHH
Confidence 467777752 111 1233332 23344 89999999999999999999999876332
Q ss_pred --eEEEEcCCcccCCCCCCccc-cc-----c--------c----h----------hhcCCCCCcccHHHHHHHHHhcCCc
Q 026207 57 --RVVIVDTSNEIGGDGDIPHS-AI-----G--------T----A----------RRMQVPEPSLQHKVMIEAVENHMPE 106 (241)
Q Consensus 57 --~v~~i~~~~e~~~~~~~~~~-~~-----~--------~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~ 106 (241)
.+.|+.+...+.....+... .. + . . .....+|+|++|+..+++++.++|+
T Consensus 81 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~ 160 (224)
T 2pcj_A 81 NRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPI 160 (224)
T ss_dssp HHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCS
T ss_pred hCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 13344322211110000000 00 0 0 0 0122356678999999999999999
Q ss_pred EEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 107 VIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 107 vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++++|||++++|+.... ...+.|.++|+++|..+ .+ .+ ||++++
T Consensus 161 lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~--------~~-~~---~d~v~~ 211 (224)
T 2pcj_A 161 LLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERE--------LA-EL---THRTLE 211 (224)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH--------HH-TT---SSEEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH--------HH-Hh---CCEEEE
Confidence 99999999999995432 33345899999999864 22 45 788776
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.5e-17 Score=141.14 Aligned_cols=66 Identities=15% Similarity=0.166 Sum_probs=54.8
Q ss_pred CCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCcccccccccc
Q 026207 86 VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVD 158 (241)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d 158 (241)
.+|+|++|++.+++++.++|+++++|||++++|+.... ...+.|.++|+++|..+ .+..+ ||
T Consensus 153 ~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~--------~~~~~---~d 221 (257)
T 1g6h_A 153 ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD--------IVLNY---ID 221 (257)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS--------TTGGG---CS
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH--------HHHHh---CC
Confidence 35667899999999999999999999999999995432 33445899999999987 66677 88
Q ss_pred EEEe
Q 026207 159 TVTL 162 (241)
Q Consensus 159 ~V~~ 162 (241)
+|++
T Consensus 222 ~v~~ 225 (257)
T 1g6h_A 222 HLYV 225 (257)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8877
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.72 E-value=5.3e-18 Score=144.34 Aligned_cols=66 Identities=18% Similarity=0.235 Sum_probs=53.8
Q ss_pred CCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCcccccccccc
Q 026207 86 VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVD 158 (241)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d 158 (241)
.+|+|++|++.+++++..+|+++++|||++++|+.... ...+.|.++|+++|..+ .+..+ ||
T Consensus 153 ~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~--------~~~~~---~d 221 (262)
T 1b0u_A 153 HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG--------FARHV---SS 221 (262)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH--------HHHHH---CS
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--------HHHHh---CC
Confidence 35678899999999999999999999999999995432 33445899999999876 45556 88
Q ss_pred EEEe
Q 026207 159 TVTL 162 (241)
Q Consensus 159 ~V~~ 162 (241)
+|++
T Consensus 222 ~v~~ 225 (262)
T 1b0u_A 222 HVIF 225 (262)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8776
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=2e-17 Score=138.60 Aligned_cols=150 Identities=14% Similarity=0.088 Sum_probs=96.0
Q ss_pred CccccceeeEEEEE--eEEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCC-------------------
Q 026207 1 MLRLRNVFLLIVKF--FYALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------- 56 (241)
Q Consensus 1 ~~~~~~~~~~~~r~--~~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------- 56 (241)
||+++|+..-.-.. -..++..+ .+..| ++.|+||||||||||++.+++.+++..|.
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHH
Confidence 78888886322100 01234433 23333 89999999999999999999999877332
Q ss_pred ---eEEEEcCCcccCCCCCC----------------ccc-----------cccc-----hhhcCCCCCcccHHHHHHHHH
Q 026207 57 ---RVVIVDTSNEIGGDGDI----------------PHS-----------AIGT-----ARRMQVPEPSLQHKVMIEAVE 101 (241)
Q Consensus 57 ---~v~~i~~~~e~~~~~~~----------------~~~-----------~~~~-----~~~~~~~~~~~~~~~~~~~~l 101 (241)
.+.|+.+...+.....+ ... ..+. ......+|+|++|+..+++++
T Consensus 81 ~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral 160 (235)
T 3tif_A 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARAL 160 (235)
T ss_dssp HHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHH
T ss_pred hhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 24555433222111000 000 0000 011234567889999999999
Q ss_pred hcCCcEEEEcCCCCHHhHHHHH-------HHH-hCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 102 NHMPEVIIVDEIGTEAEAHACR-------SIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 102 ~~~p~vlilDE~~~~~d~~~~~-------~~~-~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
.++|+++++|||++++|+.... ... +.|.++|+++|..+ . ..+ ||+|++
T Consensus 161 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--------~-~~~---~d~i~~ 217 (235)
T 3tif_A 161 ANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--------V-ARF---GERIIY 217 (235)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--------H-HTT---SSEEEE
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--------H-HHh---CCEEEE
Confidence 9999999999999999995432 333 34999999999874 2 234 788877
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-17 Score=148.48 Aligned_cols=124 Identities=21% Similarity=0.191 Sum_probs=83.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC----------------eEEEEcCCcccCCCCCCccc-cc-----c------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK----------------RVVIVDTSNEIGGDGDIPHS-AI-----G------ 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------~v~~i~~~~e~~~~~~~~~~-~~-----~------ 79 (241)
++.|+||||||||||+++|++..+++.|. ++.|+.+...+.....+... .. +
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~ 110 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEI 110 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHH
T ss_pred EEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHH
Confidence 89999999999999999999999877332 23333322211110000000 00 0
Q ss_pred --c----h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HH-HhCCcEEEEe
Q 026207 80 --T----A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SI-AERGVMLIGT 135 (241)
Q Consensus 80 --~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~-~~~g~~vi~t 135 (241)
+ . +....+|+|++|++.+++++..+|+++++|||++++|+.... .. .+.|.++|.+
T Consensus 111 ~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~v 190 (362)
T 2it1_A 111 DKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYV 190 (362)
T ss_dssp HHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 0 0 012336678899999999999999999999999999994332 32 2348999999
Q ss_pred ecCCChhhhhcCCccccccccccEEEe
Q 026207 136 AHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 136 ~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+|... .+..+ ||+|++
T Consensus 191 THd~~--------~a~~~---adri~v 206 (362)
T 2it1_A 191 THDQA--------EALAM---ADRIAV 206 (362)
T ss_dssp ESCHH--------HHHHH---CSEEEE
T ss_pred CCCHH--------HHHHh---CCEEEE
Confidence 99876 45556 788776
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=6.7e-18 Score=149.41 Aligned_cols=124 Identities=19% Similarity=0.162 Sum_probs=82.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC---------------------eEEEEcCCcccCCCCCCccc-ccc------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK---------------------RVVIVDTSNEIGGDGDIPHS-AIG------ 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~---------------------~v~~i~~~~e~~~~~~~~~~-~~~------ 79 (241)
++.|+||||||||||+++|+|..+++.|. ++.|+.+...+.....+... ..+
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~ 112 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKM 112 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCC
Confidence 89999999999999999999999877332 12233221111100000000 000
Q ss_pred -------ch--------------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHH-------HHH-HhCCc
Q 026207 80 -------TA--------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC-------RSI-AERGV 130 (241)
Q Consensus 80 -------~~--------------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~-------~~~-~~~g~ 130 (241)
+. +....+|+|++|++++++++..+|+++++|||++++|+... ... .+.|.
T Consensus 113 ~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~ 192 (353)
T 1oxx_K 113 SKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGV 192 (353)
T ss_dssp CHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 00 01234677889999999999999999999999999998322 233 33489
Q ss_pred EEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 131 MLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 131 ~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++|+++|..+ .+..+ ||+|++
T Consensus 193 tvi~vTHd~~--------~~~~~---adri~v 213 (353)
T 1oxx_K 193 TLLVVSHDPA--------DIFAI---ADRVGV 213 (353)
T ss_dssp EEEEEESCHH--------HHHHH---CSEEEE
T ss_pred EEEEEeCCHH--------HHHHh---CCEEEE
Confidence 9999999876 45556 787776
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-17 Score=139.82 Aligned_cols=128 Identities=13% Similarity=0.090 Sum_probs=86.7
Q ss_pred eecc-EEEEEeCCCchHHHHHHHHHHhccccCCC-------------------eEEEEcCCcccCCC-C-----------
Q 026207 24 IIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK-------------------RVVIVDTSNEIGGD-G----------- 71 (241)
Q Consensus 24 ~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-------------------~v~~i~~~~e~~~~-~----------- 71 (241)
+..| ++.|.||||||||||++.+++.++++.|. ++.|+.+...+... .
T Consensus 29 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~ 108 (240)
T 1ji0_A 29 VPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYN 108 (240)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhc
Confidence 4444 89999999999999999999999876321 14455432211110 0
Q ss_pred CCcccc-----------c-cch----hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhC
Q 026207 72 DIPHSA-----------I-GTA----RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAER 128 (241)
Q Consensus 72 ~~~~~~-----------~-~~~----~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~ 128 (241)
...... + +.. .....+|+|++|+..+++++.++|+++++|||++++|+.... ...+.
T Consensus 109 ~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~ 188 (240)
T 1ji0_A 109 RKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQE 188 (240)
T ss_dssp CCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHC
Confidence 000000 0 000 112335678899999999999999999999999999995432 33346
Q ss_pred CcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 129 GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 129 g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
|.++|+++|..+ .+..+ ||+|++
T Consensus 189 g~tvi~vtHd~~--------~~~~~---~d~v~~ 211 (240)
T 1ji0_A 189 GTTILLVEQNAL--------GALKV---AHYGYV 211 (240)
T ss_dssp TCCEEEEESCHH--------HHHHH---CSEEEE
T ss_pred CCEEEEEecCHH--------HHHHh---CCEEEE
Confidence 899999999875 45556 788776
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=5.5e-17 Score=143.77 Aligned_cols=114 Identities=17% Similarity=0.230 Sum_probs=88.9
Q ss_pred eeccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhc
Q 026207 24 IIFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENH 103 (241)
Q Consensus 24 ~~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 103 (241)
...++++|+||||||||||++++++.+++..+.++++++++.|+..... .....+.........+...+++++++
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~-----~~~v~q~~~~~~~~~~~~~La~aL~~ 195 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESK-----KCLVNQREVHRDTLGFSEALRSALRE 195 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCS-----SSEEEEEEBTTTBSCHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhcc-----ccceeeeeeccccCCHHHHHHHHhhh
Confidence 3556999999999999999999999998775678888887777643211 01111223333456788899999999
Q ss_pred CCcEEEEcCCCCHHhHHHHHHHHhCCcEEEEeecCCChh
Q 026207 104 MPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLE 142 (241)
Q Consensus 104 ~p~vlilDE~~~~~d~~~~~~~~~~g~~vi~t~H~~~~~ 142 (241)
+|++|++|||++......+..+.++|+++++|+|.++..
T Consensus 196 ~PdvillDEp~d~e~~~~~~~~~~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 196 DPDIILVGEMRDLETIRLALTAAETGHLVFGTLHTTSAA 234 (356)
T ss_dssp CCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEESCSSHH
T ss_pred CcCEEecCCCCCHHHHHHHHHHHhcCCEEEEEEccChHH
Confidence 999999999998777677677888999999999999833
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=99.70 E-value=9.4e-18 Score=148.38 Aligned_cols=123 Identities=20% Similarity=0.161 Sum_probs=83.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC----------------eEEEEcCCcccCCCCCCccccc-------c-----
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK----------------RVVIVDTSNEIGGDGDIPHSAI-------G----- 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------~v~~i~~~~e~~~~~~~~~~~~-------~----- 79 (241)
++.|+||||||||||+++|++..+++.|. ++.|+.+...+.....+. .++ +
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~-eni~~~l~~~~~~~~~ 121 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVY-DNVSFGLREKRVPKDE 121 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHH-HHHHHHHHHTTCCHHH
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHH-HHHHHHHHHcCCCHHH
Confidence 89999999999999999999999877432 122332211111000000 000 0
Q ss_pred ---c----h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HH-HhCCcEEEE
Q 026207 80 ---T----A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SI-AERGVMLIG 134 (241)
Q Consensus 80 ---~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~-~~~g~~vi~ 134 (241)
+ . +....+|+|++|++.+++++..+|+++++|||++++|+.... .. .+.|.++|+
T Consensus 122 ~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~ 201 (355)
T 1z47_A 122 MDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVF 201 (355)
T ss_dssp HHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 0 0 112346778899999999999999999999999999994332 22 234899999
Q ss_pred eecCCChhhhhcCCccccccccccEEEe
Q 026207 135 TAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 135 t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++|..+ .+..+ ||+|++
T Consensus 202 vTHd~~--------~a~~~---adri~v 218 (355)
T 1z47_A 202 VTHDQE--------EALEV---ADRVLV 218 (355)
T ss_dssp ECSCHH--------HHHHH---CSEEEE
T ss_pred ECCCHH--------HHHHh---CCEEEE
Confidence 999876 45556 777776
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-17 Score=147.25 Aligned_cols=148 Identities=12% Similarity=0.148 Sum_probs=94.1
Q ss_pred CccccceeeEEEEEeEEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCC----------------eEEEE
Q 026207 1 MLRLRNVFLLIVKFFYALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK----------------RVVIV 61 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------~v~~i 61 (241)
||+++|+..- +-..++... .+..| ++.|+||||||||||+++|++..+++.|. ++.|+
T Consensus 1 ml~~~~l~~~---y~~~~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v 77 (348)
T 3d31_A 1 MIEIESLSRK---WKNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFV 77 (348)
T ss_dssp CEEEEEEEEE---CSSCEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEE
T ss_pred CEEEEEEEEE---ECCEEEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEE
Confidence 7888888521 110023322 23333 89999999999999999999999877433 12233
Q ss_pred cCCcccCCCCCCccc-cc----------cch--------------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCH
Q 026207 62 DTSNEIGGDGDIPHS-AI----------GTA--------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTE 116 (241)
Q Consensus 62 ~~~~e~~~~~~~~~~-~~----------~~~--------------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~ 116 (241)
.+...+.....+... .. .+. +....+|+|++|++.+++++..+|+++++|||+++
T Consensus 78 ~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~ 157 (348)
T 3d31_A 78 YQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSA 157 (348)
T ss_dssp CTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTT
T ss_pred ecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECcccc
Confidence 222111110000000 00 000 01223567889999999999999999999999999
Q ss_pred HhHHHHH-------HH-HhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 117 AEAHACR-------SI-AERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 117 ~d~~~~~-------~~-~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+|+.... .. .+.|.++|.++|... .+..+ ||+|++
T Consensus 158 LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~--------~~~~~---adri~v 200 (348)
T 3d31_A 158 LDPRTQENAREMLSVLHKKNKLTVLHITHDQT--------EARIM---ADRIAV 200 (348)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH--------HHHHH---CSEEEE
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--------HHHHh---CCEEEE
Confidence 9994332 33 345899999999876 45556 788776
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-17 Score=148.57 Aligned_cols=148 Identities=18% Similarity=0.171 Sum_probs=92.6
Q ss_pred CccccceeeEEEEEeEEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCC---------------------
Q 026207 1 MLRLRNVFLLIVKFFYALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK--------------------- 56 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~--------------------- 56 (241)
||+++|+..-. .-..++... .+..| ++.|+||||||||||+++|++..+++.|.
T Consensus 3 ~l~~~~l~~~y--~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~ 80 (372)
T 1g29_1 3 GVRLVDVWKVF--GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKD 80 (372)
T ss_dssp EEEEEEEEEEE--TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGG
T ss_pred EEEEEeEEEEE--CCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhH
Confidence 37777775211 001223322 23333 89999999999999999999999877432
Q ss_pred -eEEEEcCCcccCCCCCCccccc-------c--------ch--------------hhcCCCCCcccHHHHHHHHHhcCCc
Q 026207 57 -RVVIVDTSNEIGGDGDIPHSAI-------G--------TA--------------RRMQVPEPSLQHKVMIEAVENHMPE 106 (241)
Q Consensus 57 -~v~~i~~~~e~~~~~~~~~~~~-------~--------~~--------------~~~~~~~~~~~~~~~~~~~l~~~p~ 106 (241)
++.|+.+...+.....+ ..++ + +. +....+|+|++|++.+++++..+|+
T Consensus 81 r~ig~v~Q~~~l~~~ltv-~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~ 159 (372)
T 1g29_1 81 RDIAMVFQSYALYPHMTV-YDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQ 159 (372)
T ss_dssp SSEEEECSCCCCCTTSCH-HHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCS
T ss_pred CCEEEEeCCCccCCCCCH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 12222211111100000 0000 0 00 0123467788999999999999999
Q ss_pred EEEEcCCCCHHhHHHHH-------HH-HhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 107 VIIVDEIGTEAEAHACR-------SI-AERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 107 vlilDE~~~~~d~~~~~-------~~-~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++++|||++++|+.... .. .+.|.++|.++|... .+..+ ||+|++
T Consensus 160 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~--------~a~~~---adri~v 212 (372)
T 1g29_1 160 VFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV--------EAMTM---GDRIAV 212 (372)
T ss_dssp EEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH--------HHHHH---CSEEEE
T ss_pred EEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH--------HHHHh---CCEEEE
Confidence 99999999999994332 32 234899999999876 45556 788776
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.2e-17 Score=138.06 Aligned_cols=124 Identities=11% Similarity=0.133 Sum_probs=84.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC-------------eEEEEcCCcccCCCCCCc------------ccc-----
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK-------------RVVIVDTSNEIGGDGDIP------------HSA----- 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-------------~v~~i~~~~e~~~~~~~~------------~~~----- 77 (241)
+++|+||||||||||++.+++.+++..|. .+.|+.+...+.....+. ...
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~ 116 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIM 116 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHH
Confidence 79999999999999999999999876332 234554322221110000 000
Q ss_pred -----ccc---hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHH-------HHHHHhCCcEEEEeecCCChh
Q 026207 78 -----IGT---ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLE 142 (241)
Q Consensus 78 -----~~~---~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~-------~~~~~~~g~~vi~t~H~~~~~ 142 (241)
++. ......+|+|++|+..+++++..+|+++++|||++++|+.. +....+.|.++|+++|..+
T Consensus 117 ~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-- 194 (214)
T 1sgw_A 117 DALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL-- 194 (214)
T ss_dssp HHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC--
T ss_pred HHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--
Confidence 000 01122356688999999999999999999999999999932 2233445889999999987
Q ss_pred hhhcCCccccccccccEEEe
Q 026207 143 NIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 143 ~~~~~p~l~~l~~~~d~V~~ 162 (241)
.+..+ +|+|++
T Consensus 195 ------~~~~~---~d~v~~ 205 (214)
T 1sgw_A 195 ------SYCDV---NENLHK 205 (214)
T ss_dssp ------TTSSE---EEEGGG
T ss_pred ------HHHHh---CCEEEE
Confidence 66667 777765
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.70 E-value=5.3e-17 Score=138.45 Aligned_cols=148 Identities=19% Similarity=0.151 Sum_probs=96.9
Q ss_pred CccccceeeEEEEEe------EEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCC---------------
Q 026207 1 MLRLRNVFLLIVKFF------YALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK--------------- 56 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~------~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~--------------- 56 (241)
||+++|+.. ++- +.++... .+..| +++|+||||||||||++.+++.+++..|.
T Consensus 2 ~l~~~~l~~---~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~ 78 (266)
T 2yz2_A 2 RIEVVNVSH---IFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRR 78 (266)
T ss_dssp CEEEEEEEE---EESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGG
T ss_pred EEEEEEEEE---EecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhh
Confidence 678888852 221 1234333 23344 89999999999999999999999876322
Q ss_pred eEEEEcCCc-ccCCCC-----------C-Ccccc-----------ccch------hhcCCCCCcccHHHHHHHHHhcCCc
Q 026207 57 RVVIVDTSN-EIGGDG-----------D-IPHSA-----------IGTA------RRMQVPEPSLQHKVMIEAVENHMPE 106 (241)
Q Consensus 57 ~v~~i~~~~-e~~~~~-----------~-~~~~~-----------~~~~------~~~~~~~~~~~~~~~~~~~l~~~p~ 106 (241)
++.|+.+.. ...... . ..... .+.. .....+|+|++|+..+++++.++|+
T Consensus 79 ~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ 158 (266)
T 2yz2_A 79 NIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPD 158 (266)
T ss_dssp GEEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred hEEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 244554331 110000 0 00000 0000 0122356788999999999999999
Q ss_pred EEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 107 VIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 107 vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++++|||++++|+.... ...+.|.++|+++|..+ .+..+ ||++++
T Consensus 159 lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~--------~~~~~---~d~v~~ 210 (266)
T 2yz2_A 159 ILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIE--------TVINH---VDRVVV 210 (266)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCT--------TTGGG---CSEEEE
T ss_pred EEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--------HHHHh---CCEEEE
Confidence 99999999999995432 33345899999999987 56667 888877
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.9e-17 Score=142.19 Aligned_cols=66 Identities=21% Similarity=0.174 Sum_probs=53.6
Q ss_pred CCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEE--EEeecCCChhhhhcCCcccccccc
Q 026207 86 VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVML--IGTAHGEWLENIIKNPILSDLIGG 156 (241)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~v--i~t~H~~~~~~~~~~p~l~~l~~~ 156 (241)
.+|+|++|++.+++++..+|+++++|||++++|+.... ...+.|.++ |+++|..+ .+..+
T Consensus 161 ~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~--------~~~~~--- 229 (279)
T 2ihy_A 161 YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIE--------EITAN--- 229 (279)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGG--------GCCTT---
T ss_pred hCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHH--------HHHHh---
Confidence 35667899999999999999999999999999995432 333348888 99999986 56666
Q ss_pred ccEEEe
Q 026207 157 VDTVTL 162 (241)
Q Consensus 157 ~d~V~~ 162 (241)
||+|++
T Consensus 230 ~d~v~~ 235 (279)
T 2ihy_A 230 FSKILL 235 (279)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 888877
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.5e-16 Score=134.47 Aligned_cols=54 Identities=11% Similarity=0.060 Sum_probs=43.0
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCC
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~ 140 (241)
+|+|++|+..+++++.++|+++++|||++++|+.... ...+.|.++|+++|..+
T Consensus 144 LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~ 204 (250)
T 2d2e_A 144 FSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQR 204 (250)
T ss_dssp ----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSG
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 7788999999999999999999999999999995432 33345899999999876
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.3e-16 Score=134.26 Aligned_cols=133 Identities=17% Similarity=0.207 Sum_probs=85.3
Q ss_pred CccccceeeEEEEEe--EEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccC-------
Q 026207 1 MLRLRNVFLLIVKFF--YALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIG------- 68 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~--~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~------- 68 (241)
|++++|+.. +.. ..++... .+..| +++|+||||||||||++.|++.+++..|. +.++ +.++.
T Consensus 1 ml~~~~l~~---~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~--i~~~-g~~~~~~~~~~~ 74 (243)
T 1mv5_A 1 MLSARHVDF---AYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGE--ITID-GQPIDNISLENW 74 (243)
T ss_dssp CEEEEEEEE---CSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSC--EEET-TEESTTTSCSCC
T ss_pred CEEEEEEEE---EeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcE--EEEC-CEEhhhCCHHHH
Confidence 677888751 110 1122222 23344 89999999999999999999999887554 3333 11100
Q ss_pred -CC-CCCccc----------c--cc------------------c---hh------------hcCCCCCcccHHHHHHHHH
Q 026207 69 -GD-GDIPHS----------A--IG------------------T---AR------------RMQVPEPSLQHKVMIEAVE 101 (241)
Q Consensus 69 -~~-~~~~~~----------~--~~------------------~---~~------------~~~~~~~~~~~~~~~~~~l 101 (241)
.. ..+++. + .+ . .. ....+|+|++|+..+++++
T Consensus 75 ~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral 154 (243)
T 1mv5_A 75 RSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAF 154 (243)
T ss_dssp TTTCCEECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHH
T ss_pred HhhEEEEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHH
Confidence 00 000000 0 00 0 00 1124677889999999999
Q ss_pred hcCCcEEEEcCCCCHHhHH-------HHHHHHhCCcEEEEeecCCC
Q 026207 102 NHMPEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEW 140 (241)
Q Consensus 102 ~~~p~vlilDE~~~~~d~~-------~~~~~~~~g~~vi~t~H~~~ 140 (241)
.++|+++++|||++++|+. .+.... .|.++|+++|..+
T Consensus 155 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~ 199 (243)
T 1mv5_A 155 LRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS 199 (243)
T ss_dssp HHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH
T ss_pred hcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChH
Confidence 9999999999999999982 233333 5899999999864
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.7e-16 Score=133.06 Aligned_cols=123 Identities=13% Similarity=0.137 Sum_probs=84.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC-----eEEEEcCCcccCCC---------CCCcccc-------------ccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK-----RVVIVDTSNEIGGD---------GDIPHSA-------------IGT 80 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-----~v~~i~~~~e~~~~---------~~~~~~~-------------~~~ 80 (241)
+++|+||||||||||++.|++.+++..|. ++.|+.+...+... ....... ++.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v~Q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~ 112 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEI 112 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEECSSCCCCSEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEEcCCCcCCCcCHHHHhhCccccCHHHHHHHHHHHhhHHHHHh
Confidence 89999999999999999999999877432 24556543221100 0000000 000
Q ss_pred ---------hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH---HHH------hCCcEEEEeecCCChh
Q 026207 81 ---------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR---SIA------ERGVMLIGTAHGEWLE 142 (241)
Q Consensus 81 ---------~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~---~~~------~~g~~vi~t~H~~~~~ 142 (241)
......+|+|++|+..+++++..+|+++++|||++++|+.... ... ..|.++|+++|..+
T Consensus 113 ~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~-- 190 (237)
T 2cbz_A 113 LPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMS-- 190 (237)
T ss_dssp STTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCST--
T ss_pred ccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChH--
Confidence 0122346778999999999999999999999999999995433 222 24889999999886
Q ss_pred hhhcCCccccccccccEEEe
Q 026207 143 NIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 143 ~~~~~p~l~~l~~~~d~V~~ 162 (241)
.+ .. ||+|++
T Consensus 191 ------~~-~~---~d~v~~ 200 (237)
T 2cbz_A 191 ------YL-PQ---VDVIIV 200 (237)
T ss_dssp ------TG-GG---SSEEEE
T ss_pred ------HH-Hh---CCEEEE
Confidence 33 24 777776
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=3.7e-17 Score=151.84 Aligned_cols=182 Identities=10% Similarity=0.072 Sum_probs=124.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC--------CCCccc--cccch----hhcCCCCCcccH
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD--------GDIPHS--AIGTA----RRMQVPEPSLQH 93 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~--------~~~~~~--~~~~~----~~~~~~~~~~~~ 93 (241)
+++|.||||||||||++++++..++. |.+++|+. .++.... +..... ..+.. .....++.+.++
T Consensus 283 i~~i~G~~GsGKSTLl~~l~g~~~~~-G~~vi~~~-~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~g~~q 360 (525)
T 1tf7_A 283 IILATGATGTGKTLLVSRFVENACAN-KERAILFA-YEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDHL 360 (525)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHTT-TCCEEEEE-SSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhC-CCCEEEEE-EeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCHHHHH
Confidence 89999999999999999999998776 66777775 3332100 000000 00000 011224667899
Q ss_pred HHHHHHHHhcCCcEEEEcCCCCHHhHH-----HH-------HHHHhCCcEEEEeecCCChhhhhcCC--ccccccccccE
Q 026207 94 KVMIEAVENHMPEVIIVDEIGTEAEAH-----AC-------RSIAERGVMLIGTAHGEWLENIIKNP--ILSDLIGGVDT 159 (241)
Q Consensus 94 ~~~~~~~l~~~p~vlilDE~~~~~d~~-----~~-------~~~~~~g~~vi~t~H~~~~~~~~~~p--~l~~l~~~~d~ 159 (241)
+.+++.++..+|+++|+| |.+++|.. .. ..+++.|+++|.++|.....+.++.| .++++ ||+
T Consensus 361 ~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~---~D~ 436 (525)
T 1tf7_A 361 QIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTI---TDT 436 (525)
T ss_dssp HHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTT---CSE
T ss_pred HHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCccccee---eeE
Confidence 999999999999999999 98887764 22 24566799999999998445555543 56778 999
Q ss_pred EEe---CChHHHHHHHHHhhhccCCCC-CceEEEEEEcCceEEeecchHHHHHHhcCCCcc
Q 026207 160 VTL---GDEEARARRCQKSILERKAPP-TFYFLIEMRERHYWVTHKTEKSVDMLLRGKTPL 216 (241)
Q Consensus 160 V~~---~~~~~~~~~~~~~~k~r~g~~-~~~~~fe~~~~g~~~~~~~~~~~~~~l~G~~~~ 216 (241)
|++ ++......|.++.+|+|+++. .....|+|++.|+.+. ++.....-++.|....
T Consensus 437 vi~L~~ge~~~~~~R~l~v~K~R~~~~~~~~~~f~i~~~Gi~v~-~~~~~~~~~l~g~~~~ 496 (525)
T 1tf7_A 437 IILLQYVEIRGEMSRAINVFKMRGSWHDKAIREFMISDKGPDIK-DSFRNFERIISGSPTR 496 (525)
T ss_dssp EEEEEEEEETTEEEEEEEEEEESSSCCCCBCEEEEECSSCEEEE-EECTTEECCTTSSCEE
T ss_pred EEEEEEEEeCCEEEEEEEEEECCCCCCCCCEEEEEEcCCCEEEe-ccccccccccCCCCcc
Confidence 996 443333348889999999987 6889999999999743 3222334566665443
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=99.65 E-value=5.7e-17 Score=137.01 Aligned_cols=144 Identities=12% Similarity=0.106 Sum_probs=94.0
Q ss_pred CccccceeeEEEEEeEEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEE
Q 026207 1 MLRLRNVFLLIVKFFYALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVV 59 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~ 59 (241)
||+++|+..- .+++.. .+..| +++|+||||||||||++.+++.+++. |. ++.
T Consensus 4 ~l~~~~l~~~------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~ 76 (249)
T 2qi9_C 4 VMQLQDVAES------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRA 76 (249)
T ss_dssp EEEEEEEEET------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEE
T ss_pred EEEEEceEEE------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEE
Confidence 4677777521 233332 34444 89999999999999999999999876 43 133
Q ss_pred EEcCCcccCCCCC---------Ccc---cc-------ccc----hhhcCCCCCcccHHHHHHHHHhcCCc-------EEE
Q 026207 60 IVDTSNEIGGDGD---------IPH---SA-------IGT----ARRMQVPEPSLQHKVMIEAVENHMPE-------VII 109 (241)
Q Consensus 60 ~i~~~~e~~~~~~---------~~~---~~-------~~~----~~~~~~~~~~~~~~~~~~~~l~~~p~-------vli 109 (241)
|+.+...+..... ... .. .+. ......+|+|++|+..+++++..+|+ +++
T Consensus 77 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lll 156 (249)
T 2qi9_C 77 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLL 156 (249)
T ss_dssp EECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEE
T ss_pred EECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEE
Confidence 4432222111000 000 00 000 01123467788999999999999999 999
Q ss_pred EcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 110 VDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 110 lDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+|||++++|+.... ...+.|.++|+++|..+ .+..+ ||++++
T Consensus 157 LDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~--------~~~~~---~d~v~~ 205 (249)
T 2qi9_C 157 LDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLN--------HTLRH---AHRAWL 205 (249)
T ss_dssp ESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH--------HHHHH---CSEEEE
T ss_pred EECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--------HHHHh---CCEEEE
Confidence 99999999995432 33345899999999876 44555 777776
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=99.64 E-value=7e-17 Score=134.75 Aligned_cols=113 Identities=10% Similarity=-0.042 Sum_probs=78.1
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC-----eEEEEcCCcccCCCC--------C-Cccc----c---ccc---hh-
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK-----RVVIVDTSNEIGGDG--------D-IPHS----A---IGT---AR- 82 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-----~v~~i~~~~e~~~~~--------~-~~~~----~---~~~---~~- 82 (241)
+++|+||||||||||++.+++.+++..|. ++.|+.+...+.... . .... . .+. ..
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~ 115 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISK 115 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCCCCSBCHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCcccCCCHHHHhhccCCcChHHHHHHHHHhCcHHHHHh
Confidence 89999999999999999999999877432 345665433221100 0 0000 0 000 00
Q ss_pred -----------hcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH---HH-H---hCCcEEEEeecCCC
Q 026207 83 -----------RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR---SI-A---ERGVMLIGTAHGEW 140 (241)
Q Consensus 83 -----------~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~---~~-~---~~g~~vi~t~H~~~ 140 (241)
....+|+|++|+..+++++..+|+++++|||++++|+.... .. . ..|.++|+++|..+
T Consensus 116 ~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~ 191 (229)
T 2pze_A 116 FAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKME 191 (229)
T ss_dssp STTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHH
T ss_pred CcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChH
Confidence 11356778999999999999999999999999999996543 21 1 23789999999864
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=2.5e-16 Score=132.91 Aligned_cols=112 Identities=21% Similarity=0.176 Sum_probs=76.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCCC------C-Cccc---c--
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGDG------D-IPHS---A-- 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~~------~-~~~~---~-- 77 (241)
+++|+||||||||||++.|++.+++..|. ++.|+.+...+.... . .+.. .
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~ 116 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVI 116 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHHHHHTTTCTTCCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCccccccHHHHHhccCCCCCHHHHH
Confidence 89999999999999999999999876332 134444322111000 0 0000 0
Q ss_pred -----ccc---hhh------------cCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCc
Q 026207 78 -----IGT---ARR------------MQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGV 130 (241)
Q Consensus 78 -----~~~---~~~------------~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~ 130 (241)
.+. ..+ ...+|+|++|+..+++++..+|+++++|||++++|+.... .. ..|.
T Consensus 117 ~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~-~~g~ 195 (247)
T 2ff7_A 117 YAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI-CKGR 195 (247)
T ss_dssp HHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHH-HTTS
T ss_pred HHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-cCCC
Confidence 000 001 1357778999999999999999999999999999995432 33 3589
Q ss_pred EEEEeecCCC
Q 026207 131 MLIGTAHGEW 140 (241)
Q Consensus 131 ~vi~t~H~~~ 140 (241)
++|+++|..+
T Consensus 196 tviivtH~~~ 205 (247)
T 2ff7_A 196 TVIIIAHRLS 205 (247)
T ss_dssp EEEEECSSGG
T ss_pred EEEEEeCCHH
Confidence 9999999875
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=4.3e-16 Score=133.15 Aligned_cols=113 Identities=15% Similarity=0.085 Sum_probs=76.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCC----------CCCcc-cc-
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGD----------GDIPH-SA- 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~----------~~~~~-~~- 77 (241)
+++|+||||||||||++.|++.+++..|. ++.|+.+...+... ..... ..
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~ 126 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEI 126 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHHHHHTTCSSCCCHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCccccccHHHHHhhhcccCChHHHH
Confidence 89999999999999999999999876332 24444432221110 00000 00
Q ss_pred ------------c-----cc----hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHH-hC
Q 026207 78 ------------I-----GT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIA-ER 128 (241)
Q Consensus 78 ------------~-----~~----~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~-~~ 128 (241)
+ +. -.....+|+|++|+..+++++..+|+++++|||++++|+.... ... +.
T Consensus 127 ~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~ 206 (271)
T 2ixe_A 127 TAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWA 206 (271)
T ss_dssp HHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTT
T ss_pred HHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhc
Confidence 0 00 0122346778899999999999999999999999999995433 222 23
Q ss_pred CcEEEEeecCCC
Q 026207 129 GVMLIGTAHGEW 140 (241)
Q Consensus 129 g~~vi~t~H~~~ 140 (241)
|.++|+++|..+
T Consensus 207 g~tviivtHd~~ 218 (271)
T 2ixe_A 207 SRTVLLITQQLS 218 (271)
T ss_dssp TSEEEEECSCHH
T ss_pred CCEEEEEeCCHH
Confidence 899999999875
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=99.62 E-value=7e-16 Score=131.57 Aligned_cols=54 Identities=19% Similarity=0.150 Sum_probs=45.6
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCC
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~ 140 (241)
+|+|++|+..+++++..+|+++++|||++++|+.... ...+.|.++|+++|..+
T Consensus 165 LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~ 225 (267)
T 2zu0_C 165 FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQR 225 (267)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGG
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHH
Confidence 6778899999999999999999999999999995443 22235889999999876
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.62 E-value=2e-15 Score=128.44 Aligned_cols=146 Identities=18% Similarity=0.130 Sum_probs=93.1
Q ss_pred CccccceeeEEEEE--eEEeeCcc--eeeccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCccc-----CCC-
Q 026207 1 MLRLRNVFLLIVKF--FYALYSIN--KIIFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEI-----GGD- 70 (241)
Q Consensus 1 ~~~~~~~~~~~~r~--~~~~~~~~--~~~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~-----~~~- 70 (241)
||+++|+..-.-.. .+.++... .+...+++|.||||||||||++.+++.+ |+.|. ++++ +.++ ...
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~--I~~~-g~~~~~~~~~~~i 76 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINLEVNGEKVIILGPNGSGKTTLLRAISGLL-PYSGN--IFIN-GMEVRKIRNYIRY 76 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEECSSEEEEECCTTSSHHHHHHHHTTSS-CCEEE--EEET-TEEGGGCSCCTTE
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeEEECCEEEEEECCCCCCHHHHHHHHhCCC-CCCcE--EEEC-CEECcchHHhhhe
Confidence 78888886322110 02344433 3443499999999999999999999999 76433 3333 1110 000
Q ss_pred C-CCcccc------------------------------ccch-----hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCC
Q 026207 71 G-DIPHSA------------------------------IGTA-----RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIG 114 (241)
Q Consensus 71 ~-~~~~~~------------------------------~~~~-----~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~ 114 (241)
. .+++.. ++.. .....+|++++|+..+++++..+|+++++|||+
T Consensus 77 ~~~v~Q~~~l~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPt 156 (263)
T 2pjz_A 77 STNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPF 156 (263)
T ss_dssp EECCGGGSCTTSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTT
T ss_pred EEEeCCCCccCCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCc
Confidence 1 111100 0000 112235667899999999999999999999999
Q ss_pred CHHhHHHHHH----HHh-CCcEEEEeecCCChhhhhcCCcccccccccc-EEEe
Q 026207 115 TEAEAHACRS----IAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVD-TVTL 162 (241)
Q Consensus 115 ~~~d~~~~~~----~~~-~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d-~V~~ 162 (241)
+++|+..... ..+ .. ++|+++|..+ .+..+ || ++++
T Consensus 157 s~LD~~~~~~l~~~L~~~~~-tviivtHd~~--------~~~~~---~d~~i~~ 198 (263)
T 2pjz_A 157 ENVDAARRHVISRYIKEYGK-EGILVTHELD--------MLNLY---KEYKAYF 198 (263)
T ss_dssp TTCCHHHHHHHHHHHHHSCS-EEEEEESCGG--------GGGGC---TTSEEEE
T ss_pred cccCHHHHHHHHHHHHHhcC-cEEEEEcCHH--------HHHHh---cCceEEE
Confidence 9999955431 112 23 9999999876 55666 88 8776
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.59 E-value=7.6e-15 Score=124.73 Aligned_cols=113 Identities=18% Similarity=0.200 Sum_probs=77.5
Q ss_pred eccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcC
Q 026207 25 IFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHM 104 (241)
Q Consensus 25 ~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 104 (241)
..++++|+||||||||||++.+++.+++....++.+.+++.+..... ......+..+.-....++..++.++.++
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~-----~~~~v~q~~~gl~~~~l~~~la~aL~~~ 98 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKH-----KKSIVNQREVGEDTKSFADALRAALRED 98 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCC-----SSSEEEEEEBTTTBSCHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCC-----cceeeeHHHhCCCHHHHHHHHHHHHhhC
Confidence 44589999999999999999999999775234666666554432111 0011011111111246789999999999
Q ss_pred CcEEEEcCCCCHHhHHHHHHHHhCCcEEEEeecCCChh
Q 026207 105 PEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLE 142 (241)
Q Consensus 105 p~vlilDE~~~~~d~~~~~~~~~~g~~vi~t~H~~~~~ 142 (241)
|+++++|||++......+..+.+.|+++++|+|..+..
T Consensus 99 p~illlDEp~D~~~~~~~l~~~~~g~~vl~t~H~~~~~ 136 (261)
T 2eyu_A 99 PDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAI 136 (261)
T ss_dssp CSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSHH
T ss_pred CCEEEeCCCCCHHHHHHHHHHHccCCEEEEEeCcchHH
Confidence 99999999995544444444557899999999998743
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.8e-15 Score=128.47 Aligned_cols=111 Identities=16% Similarity=0.157 Sum_probs=74.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCC--------CC--Ccccc--
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGD--------GD--IPHSA-- 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~--------~~--~~~~~-- 77 (241)
+++|+||||||||||++.|++.+++. |. ++.|+.+...+... .. .....
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~~~~-G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~ 126 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFYDAE-GDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVI 126 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGBCHHHHHTTEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCC-eEEEECCEEhhhcCHHHHhccEEEEcCCCcccccCHHHHHhccCCCCCHHHHH
Confidence 89999999999999999999998753 22 13344322111100 00 00000
Q ss_pred -----ccch---------------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCc
Q 026207 78 -----IGTA---------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGV 130 (241)
Q Consensus 78 -----~~~~---------------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~ 130 (241)
.+.. .+...+|+|++|+..+++++..+|+++++|||++++|+.... .. ..|.
T Consensus 127 ~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l-~~~~ 205 (260)
T 2ghi_A 127 KATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDL-RKNR 205 (260)
T ss_dssp HHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHH-TTTS
T ss_pred HHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHh-cCCC
Confidence 0000 011346778999999999999999999999999999995432 23 3488
Q ss_pred EEEEeecCCC
Q 026207 131 MLIGTAHGEW 140 (241)
Q Consensus 131 ~vi~t~H~~~ 140 (241)
++|+++|..+
T Consensus 206 tviivtH~~~ 215 (260)
T 2ghi_A 206 TLIIIAHRLS 215 (260)
T ss_dssp EEEEECSSGG
T ss_pred EEEEEcCCHH
Confidence 9999999875
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=7.5e-16 Score=133.76 Aligned_cols=113 Identities=18% Similarity=0.145 Sum_probs=75.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCCC--------C--Cccccc-
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGDG--------D--IPHSAI- 78 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~~--------~--~~~~~~- 78 (241)
++.|+||||||||||++.|++.+.+..|. .+.|+.+...+.... . ......
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~ 161 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVE 161 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHH
T ss_pred EEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHH
Confidence 79999999999999999999999877432 133443222111000 0 000000
Q ss_pred ------c---chh------------hcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH------HHHhCCcE
Q 026207 79 ------G---TAR------------RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR------SIAERGVM 131 (241)
Q Consensus 79 ------~---~~~------------~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~------~~~~~g~~ 131 (241)
+ ... +...+|+|++|+..+++++..+|+++|+|||++.+|+.... .....+.+
T Consensus 162 ~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~T 241 (306)
T 3nh6_A 162 AAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRT 241 (306)
T ss_dssp HHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSE
T ss_pred HHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 0 000 01246778899999999999999999999999999995432 11235789
Q ss_pred EEEeecCCC
Q 026207 132 LIGTAHGEW 140 (241)
Q Consensus 132 vi~t~H~~~ 140 (241)
+|+++|..+
T Consensus 242 vi~itH~l~ 250 (306)
T 3nh6_A 242 TIVVAHRLS 250 (306)
T ss_dssp EEEECCSHH
T ss_pred EEEEEcChH
Confidence 999999875
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.3e-15 Score=140.04 Aligned_cols=124 Identities=15% Similarity=0.120 Sum_probs=87.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------eEEEEcCCcccCCCCCC-------------ccc-----c---ccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------RVVIVDTSNEIGGDGDI-------------PHS-----A---IGT 80 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------~v~~i~~~~e~~~~~~~-------------~~~-----~---~~~ 80 (241)
++.|+||||||||||+++|++.++++.|. .+.++.+.........+ ... . ++.
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l 375 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNL 375 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTG
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCC
Confidence 89999999999999999999999887543 34454422111000000 000 0 000
Q ss_pred ----hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HH-HhCCcEEEEeecCCChhhhhcCC
Q 026207 81 ----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SI-AERGVMLIGTAHGEWLENIIKNP 148 (241)
Q Consensus 81 ----~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~-~~~g~~vi~t~H~~~~~~~~~~p 148 (241)
......+|+|++|++.+++++.++|+++|+|||++++|+.... .. .+.|.++|+++|..+
T Consensus 376 ~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~-------- 447 (538)
T 3ozx_A 376 HRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS-------- 447 (538)
T ss_dssp GGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH--------
T ss_pred HHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--------
Confidence 0123456778999999999999999999999999999995432 22 346899999999987
Q ss_pred ccccccccccEEEe
Q 026207 149 ILSDLIGGVDTVTL 162 (241)
Q Consensus 149 ~l~~l~~~~d~V~~ 162 (241)
.+..+ ||+|++
T Consensus 448 ~~~~~---aDri~v 458 (538)
T 3ozx_A 448 IHDYI---ADRIIV 458 (538)
T ss_dssp HHHHH---CSEEEE
T ss_pred HHHHh---CCEEEE
Confidence 55666 888877
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=8.3e-16 Score=137.55 Aligned_cols=54 Identities=7% Similarity=0.017 Sum_probs=45.0
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHHH----H--HhCCcEEEEeecCCC
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRS----I--AERGVMLIGTAHGEW 140 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~~----~--~~~g~~vi~t~H~~~ 140 (241)
+|+|++|++++++++..+|+++++|||++++|+..... . ...+.++|+++|...
T Consensus 156 LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e 215 (390)
T 3gd7_A 156 LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIE 215 (390)
T ss_dssp SCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSG
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHH
Confidence 68899999999999999999999999999999954331 1 234788999999864
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=99.58 E-value=4.2e-15 Score=140.02 Aligned_cols=124 Identities=15% Similarity=0.118 Sum_probs=88.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC-----eEEEEcCCcccCCCCCCcccc--c-----c---c----h-------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK-----RVVIVDTSNEIGGDGDIPHSA--I-----G---T----A------- 81 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-----~v~~i~~~~e~~~~~~~~~~~--~-----~---~----~------- 81 (241)
++.|+||||||||||++.|++.++++.|. ++.|+.+.........+.... . . . .
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~ 463 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIID 463 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTT
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCch
Confidence 89999999999999999999999877443 466776543221111100000 0 0 0 0
Q ss_pred ---hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HH-HhCCcEEEEeecCCChhhhhcCCcc
Q 026207 82 ---RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SI-AERGVMLIGTAHGEWLENIIKNPIL 150 (241)
Q Consensus 82 ---~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~-~~~g~~vi~t~H~~~~~~~~~~p~l 150 (241)
.....+|+|++|++.+++++.++|+++++|||++++|+.... .. .+.|.++|+++|... .+
T Consensus 464 ~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~--------~~ 535 (607)
T 3bk7_A 464 LYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL--------MI 535 (607)
T ss_dssp TTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH--------HH
T ss_pred HhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--------HH
Confidence 123346778899999999999999999999999999995432 22 246899999999886 45
Q ss_pred ccccccccEEEe
Q 026207 151 SDLIGGVDTVTL 162 (241)
Q Consensus 151 ~~l~~~~d~V~~ 162 (241)
..+ ||+|++
T Consensus 536 ~~~---adrv~v 544 (607)
T 3bk7_A 536 DYV---SDRLIV 544 (607)
T ss_dssp HHH---CSEEEE
T ss_pred HHh---CCEEEE
Confidence 555 777776
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=2.5e-15 Score=129.53 Aligned_cols=117 Identities=11% Similarity=-0.015 Sum_probs=80.4
Q ss_pred eecc-EEEEEeCCCchHHHHHHHHHHhccccCCC-----eEEEEcCCcccCCCC-------C-Cccc----c---ccc--
Q 026207 24 IIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK-----RVVIVDTSNEIGGDG-------D-IPHS----A---IGT-- 80 (241)
Q Consensus 24 ~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-----~v~~i~~~~e~~~~~-------~-~~~~----~---~~~-- 80 (241)
+..| +++|+||||||||||++.|++.+++..|. ++.|+.+...+.... . .... . .+.
T Consensus 61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~l~~ 140 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPGTIKENIIGVSYDEYRYRSVIKACQLEE 140 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEECSSCCCCSSBHHHHHHTTCCCHHHHHHHHHHTTCHH
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEEeCCCccCcccHHHHhhCcccchHHHHHHHHHhChHH
Confidence 3344 89999999999999999999999877432 355666433221110 0 0000 0 000
Q ss_pred -hhh------------cCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHHHHH-------hCCcEEEEeecCCC
Q 026207 81 -ARR------------MQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIA-------ERGVMLIGTAHGEW 140 (241)
Q Consensus 81 -~~~------------~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~~~~-------~~g~~vi~t~H~~~ 140 (241)
..+ ...+|+|++|+..+++++..+|+++++|||++++|+....... ..|.++|+++|...
T Consensus 141 ~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~ 220 (290)
T 2bbs_A 141 DISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKME 220 (290)
T ss_dssp HHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHH
T ss_pred HHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHH
Confidence 000 1357778999999999999999999999999999996544221 23789999999874
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.57 E-value=4.4e-15 Score=138.20 Aligned_cols=125 Identities=15% Similarity=0.146 Sum_probs=88.2
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCC-----eEEEEcCCcccCCCCCCccc-------c----------c---cc-
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQK-----RVVIVDTSNEIGGDGDIPHS-------A----------I---GT- 80 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-----~v~~i~~~~e~~~~~~~~~~-------~----------~---~~- 80 (241)
.++.|+||||||||||++.|++.+++..|. ++.|+.+.........+... . + +.
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 392 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGII 392 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCG
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCh
Confidence 389999999999999999999999877442 46677644322111000000 0 0 00
Q ss_pred ---hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHH-hCCcEEEEeecCCChhhhhcCCc
Q 026207 81 ---ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIA-ERGVMLIGTAHGEWLENIIKNPI 149 (241)
Q Consensus 81 ---~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~-~~g~~vi~t~H~~~~~~~~~~p~ 149 (241)
......+|+|++|++.+++++..+|+++|+|||++++|+.... ... +.|.++|+++|... .
T Consensus 393 ~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~--------~ 464 (538)
T 1yqt_A 393 DLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL--------M 464 (538)
T ss_dssp GGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH--------H
T ss_pred hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--------H
Confidence 0123346778899999999999999999999999999995432 222 45899999999886 5
Q ss_pred cccccccccEEEe
Q 026207 150 LSDLIGGVDTVTL 162 (241)
Q Consensus 150 l~~l~~~~d~V~~ 162 (241)
+..+ ||+|++
T Consensus 465 ~~~~---~drv~v 474 (538)
T 1yqt_A 465 IDYV---SDRLMV 474 (538)
T ss_dssp HHHH---CSEEEE
T ss_pred HHHh---CCEEEE
Confidence 5556 788776
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=2.2e-15 Score=124.05 Aligned_cols=159 Identities=13% Similarity=0.143 Sum_probs=90.5
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcccc-----CCCeEEEEcCCcccCCC---CCCccccccch-----hhcCC---CCCc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDE-----FQKRVVIVDTSNEIGGD---GDIPHSAIGTA-----RRMQV---PEPS 90 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~-----~g~~v~~i~~~~e~~~~---~~~~~~~~~~~-----~~~~~---~~~~ 90 (241)
.+++|+||||||||||++++++...+. .+..+++++ ..+.... .... +..+.. ..+.. .+..
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~-~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 103 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWID-TENTFRPERIREIA-QNRGLDPDEVLKHIYVARAFNSN 103 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE-SSSCCCHHHHHHHH-HHTTSCHHHHHHTEEEEECCSHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEE-CCCCCCHHHHHHHH-HHcCCCHHHHhhcEEEEecCChH
Confidence 389999999999999999999965542 134678887 3321100 0000 000000 00100 0111
Q ss_pred cc---HHHHHHHHH-----hcCCcEEEEcCCCCHHhHH----------------HH---H-HHHhCCcEEEEeecCCChh
Q 026207 91 LQ---HKVMIEAVE-----NHMPEVIIVDEIGTEAEAH----------------AC---R-SIAERGVMLIGTAHGEWLE 142 (241)
Q Consensus 91 ~~---~~~~~~~~l-----~~~p~vlilDE~~~~~d~~----------------~~---~-~~~~~g~~vi~t~H~~~~~ 142 (241)
.. ...+.+.+. ..+|+++++|||++.+++. .+ . .+.+.|+++|+++|..+ .
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~-~ 182 (231)
T 4a74_A 104 HQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA-N 182 (231)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---
T ss_pred HHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeeccc-C
Confidence 11 122223333 5689999999999987652 11 1 23456999999999886 2
Q ss_pred hhhcCCccccccccccEEEe-CChHHHHHHHHHhhhccCCCCCceEEEEEEcCce
Q 026207 143 NIIKNPILSDLIGGVDTVTL-GDEEARARRCQKSILERKAPPTFYFLIEMRERHY 196 (241)
Q Consensus 143 ~~~~~p~l~~l~~~~d~V~~-~~~~~~~~~~~~~~k~r~g~~~~~~~fe~~~~g~ 196 (241)
....++++ +|.+++ .++... .+.++..|+|+++.... .|++.+.|+
T Consensus 183 ---~g~~~~~~---~d~~l~l~~~~~~-~r~l~~~K~r~~~~~~~-~f~i~~~Gl 229 (231)
T 4a74_A 183 ---GGHILAHS---ATLRVYLRKGKGG-KRIARLIDAPHLPEGEA-VFSITEKGI 229 (231)
T ss_dssp ----------C---CSEEEEEEECTTS-CEEEEEESCC--CCSCE-EEEEETTEE
T ss_pred ---cchhhHhh---ceEEEEEEecCCC-eEEEEEEeCCCCCCceE-EEEEecccc
Confidence 11256777 899888 222222 26788889999988765 999998886
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.6e-15 Score=139.70 Aligned_cols=124 Identities=15% Similarity=0.132 Sum_probs=87.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC-----eEEEEcCCcccCCCCCCcc--------c---------c---cc---
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK-----RVVIVDTSNEIGGDGDIPH--------S---------A---IG--- 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-----~v~~i~~~~e~~~~~~~~~--------~---------~---~~--- 79 (241)
++.|+||||||||||++.|++.++++.|. .+.++.+.........+.. . . ++
T Consensus 380 iv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~ 459 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDD 459 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTT
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCChh
Confidence 68999999999999999999999887653 3566653321110000000 0 0 00
Q ss_pred -chhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HH-HhCCcEEEEeecCCChhhhhcCCcc
Q 026207 80 -TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SI-AERGVMLIGTAHGEWLENIIKNPIL 150 (241)
Q Consensus 80 -~~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~-~~~g~~vi~t~H~~~~~~~~~~p~l 150 (241)
.......+|+|++|++.+++++.++|+++++|||++++|+.... .. .+.|.++|+++|... .+
T Consensus 460 ~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~--------~~ 531 (608)
T 3j16_B 460 IIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI--------MA 531 (608)
T ss_dssp TSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH--------HH
T ss_pred hhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--------HH
Confidence 00123457788999999999999999999999999999985332 32 346999999999986 55
Q ss_pred ccccccccEEEe
Q 026207 151 SDLIGGVDTVTL 162 (241)
Q Consensus 151 ~~l~~~~d~V~~ 162 (241)
..+ ||+|++
T Consensus 532 ~~~---aDrviv 540 (608)
T 3j16_B 532 TYL---ADKVIV 540 (608)
T ss_dssp HHH---CSEEEE
T ss_pred HHh---CCEEEE
Confidence 556 788776
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.5e-14 Score=128.78 Aligned_cols=115 Identities=18% Similarity=0.222 Sum_probs=81.2
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCC
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMP 105 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p 105 (241)
.++++|+|||||||||+++.+++.+++....++++++++.+.... ...+...+..+......+...++.+++++|
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~-----~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~p 210 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFK-----HKKSIVNQREVGEDTKSFADALRAALREDP 210 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCC-----CSSSEEEEEEBTTTBSCSHHHHHHHTTSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhc-----cCceEEEeeecCCCHHHHHHHHHHHhhhCc
Confidence 458999999999999999999999987533577788765553211 111111111111122455778899999999
Q ss_pred cEEEEcCCCCHHhHHHHHHHHhCCcEEEEeecCCChhhhh
Q 026207 106 EVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENII 145 (241)
Q Consensus 106 ~vlilDE~~~~~d~~~~~~~~~~g~~vi~t~H~~~~~~~~ 145 (241)
++|++|||++......+..+.+.|+++++|+|.+++.+.+
T Consensus 211 d~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~ 250 (372)
T 2ewv_A 211 DVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTI 250 (372)
T ss_dssp SEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHH
T ss_pred CEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHH
Confidence 9999999997766555556667899999999998855443
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=99.55 E-value=4.6e-15 Score=139.32 Aligned_cols=123 Identities=15% Similarity=0.141 Sum_probs=82.1
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCCC------C-C-cc---ccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGDG------D-I-PH---SAI 78 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~~------~-~-~~---~~~ 78 (241)
.++|.||||||||||++.+++.++|+.|. ++.|+.+...+.... . . +. ...
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 450 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQI 450 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCCCCCHHHH
Confidence 89999999999999999999999887443 233333221111000 0 0 00 000
Q ss_pred -------cc---hh------------hcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH------HHHhCCc
Q 026207 79 -------GT---AR------------RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR------SIAERGV 130 (241)
Q Consensus 79 -------~~---~~------------~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~------~~~~~g~ 130 (241)
+. .. +...+|+|++|+..+++++..+|+++++|||++.+|+.... .....|+
T Consensus 451 ~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~ 530 (582)
T 3b5x_A 451 EQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNK 530 (582)
T ss_pred HHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCC
Confidence 00 00 01246778899999999999999999999999999995432 1123489
Q ss_pred EEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 131 MLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 131 ~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++|.++|..+ .+. . ||+|+.
T Consensus 531 tvi~itH~~~--------~~~-~---~d~i~~ 550 (582)
T 3b5x_A 531 TVLVIAHRLS--------TIE-Q---ADEILV 550 (582)
T ss_pred EEEEEecCHH--------HHH-h---CCEEEE
Confidence 9999999875 332 3 788877
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.52 E-value=4.7e-14 Score=123.73 Aligned_cols=105 Identities=16% Similarity=0.175 Sum_probs=76.4
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPE 106 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~ 106 (241)
.+++|+||||||||||++.+++.++++ ...+++++..++.... .....+.. ..++++++..+++++.++|+
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~--~g~i~i~~~~e~~~~~--~~~~i~~~-----~ggg~~~r~~la~aL~~~p~ 242 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKE--ERIISIEDTEEIVFKH--HKNYTQLF-----FGGNITSADCLKSCLRMRPD 242 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTT--SCEEEEESSCCCCCSS--CSSEEEEE-----CBTTBCHHHHHHHHTTSCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCC--CcEEEECCeecccccc--chhEEEEE-----eCCChhHHHHHHHHhhhCCC
Confidence 379999999999999999999999887 3457777554442110 01111110 01689999999999999999
Q ss_pred EEEEcCCCCHHhHHHHHHHHhCCc-EEEEeecCCCh
Q 026207 107 VIIVDEIGTEAEAHACRSIAERGV-MLIGTAHGEWL 141 (241)
Q Consensus 107 vlilDE~~~~~d~~~~~~~~~~g~-~vi~t~H~~~~ 141 (241)
++++|||++..... ...+..+|+ ++++|+|..+.
T Consensus 243 ilildE~~~~e~~~-~l~~~~~g~~tvi~t~H~~~~ 277 (330)
T 2pt7_A 243 RIILGELRSSEAYD-FYNVLCSGHKGTLTTLHAGSS 277 (330)
T ss_dssp EEEECCCCSTHHHH-HHHHHHTTCCCEEEEEECSSH
T ss_pred EEEEcCCChHHHHH-HHHHHhcCCCEEEEEEcccHH
Confidence 99999999854333 334445676 69999999973
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=99.51 E-value=2.2e-14 Score=135.18 Aligned_cols=123 Identities=20% Similarity=0.211 Sum_probs=81.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEE-------EEcCCcccC--------C--C-----CCC---cc-------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVV-------IVDTSNEIG--------G--D-----GDI---PH------- 75 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~-------~i~~~~e~~--------~--~-----~~~---~~------- 75 (241)
++.|+||||||||||++.|+|.+.++.|.... ++. +.++. . . ... +.
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~-G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~ 197 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFR-GNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVR 197 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTT-TSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHH
T ss_pred EEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeC-CEehhhhhhhhhhhhcceEEeechhhhchhhccccHH
Confidence 89999999999999999999999877555100 000 10000 0 0 000 00
Q ss_pred ---------cc-------cc----chhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHH-------HHHHhC
Q 026207 76 ---------SA-------IG----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC-------RSIAER 128 (241)
Q Consensus 76 ---------~~-------~~----~~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~-------~~~~~~ 128 (241)
.. ++ .-+....+|+|++|++.+++++.++|+++++|||++++|+... ....+.
T Consensus 198 e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~ 277 (607)
T 3bk7_A 198 ELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANE 277 (607)
T ss_dssp HHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhc
Confidence 00 00 0012334677889999999999999999999999999999532 234446
Q ss_pred CcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 129 GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 129 g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
|.++|+++|..+ .+..+ +|+|++
T Consensus 278 g~tvIivsHdl~--------~~~~~---adri~v 300 (607)
T 3bk7_A 278 GKAVLVVEHDLA--------VLDYL---SDVIHV 300 (607)
T ss_dssp TCEEEEECSCHH--------HHHHH---CSEEEE
T ss_pred CCEEEEEecChH--------HHHhh---CCEEEE
Confidence 999999999876 34445 666655
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.8e-14 Score=132.83 Aligned_cols=67 Identities=19% Similarity=0.184 Sum_probs=53.4
Q ss_pred CCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHH-------HHHHhCCcEEEEeecCCChhhhhcCCccccccccc
Q 026207 85 QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC-------RSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGV 157 (241)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~-------~~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~ 157 (241)
..+|++++|++.+++++.++|+++|+|||++.+|+... ....+.|.++|+++|... .+..+ |
T Consensus 157 ~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~--------~~~~~---~ 225 (538)
T 1yqt_A 157 QHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLA--------VLDYL---S 225 (538)
T ss_dssp GGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH--------HHHHH---C
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--------HHHHh---C
Confidence 34677889999999999999999999999999999532 234456999999999876 44455 6
Q ss_pred cEEEe
Q 026207 158 DTVTL 162 (241)
Q Consensus 158 d~V~~ 162 (241)
|+|++
T Consensus 226 dri~v 230 (538)
T 1yqt_A 226 DIIHV 230 (538)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 77665
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.50 E-value=4.6e-14 Score=131.26 Aligned_cols=67 Identities=13% Similarity=0.177 Sum_probs=53.8
Q ss_pred cCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCcccccccc
Q 026207 84 MQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGG 156 (241)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~ 156 (241)
...+|++++|++.+++++.++|+++|+|||++++|+.... ... .|.++|+++|..+ .+..+
T Consensus 136 ~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~-~g~tii~vsHdl~--------~~~~~--- 203 (538)
T 3ozx_A 136 ANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELL-KNKYVIVVDHDLI--------VLDYL--- 203 (538)
T ss_dssp GGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHC-TTSEEEEECSCHH--------HHHHH---
T ss_pred hhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHh-CCCEEEEEEeChH--------HHHhh---
Confidence 3446778899999999999999999999999999995432 333 3899999999986 45555
Q ss_pred ccEEEe
Q 026207 157 VDTVTL 162 (241)
Q Consensus 157 ~d~V~~ 162 (241)
||+|++
T Consensus 204 ~d~i~v 209 (538)
T 3ozx_A 204 TDLIHI 209 (538)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 777665
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.1e-14 Score=117.03 Aligned_cols=168 Identities=11% Similarity=0.003 Sum_probs=96.4
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccC---C----CCCCcccc----ccchhhc----------C
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIG---G----DGDIPHSA----IGTARRM----------Q 85 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~---~----~~~~~~~~----~~~~~~~----------~ 85 (241)
.+++|+||||||||||++++++...+. +.+++++....... . .+...+.. ....... .
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRD-GDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEKKLIIIDALMKEKEDQWSLV 102 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHH-TCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTTTEEEEECCC----CTTBCS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHC-CCeEEEEEcccCHHHHHHHHHHhcchHHHHhhCCEEEEeccccccCceeeec
Confidence 389999999999999999999887665 45778776221100 0 00000000 0000000 0
Q ss_pred CCCCcccHHHHHHHHHhcCCc--EEEEcCCCCHH--hHH-------HHHH-HHhCCcEEEEeecCCCh-hhhhcCCcccc
Q 026207 86 VPEPSLQHKVMIEAVENHMPE--VIIVDEIGTEA--EAH-------ACRS-IAERGVMLIGTAHGEWL-ENIIKNPILSD 152 (241)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~p~--vlilDE~~~~~--d~~-------~~~~-~~~~g~~vi~t~H~~~~-~~~~~~p~l~~ 152 (241)
..+.+...+.+.+.+..++|+ ++++|||++.. |+. .+.. +.+.|+++++++|..+. .+... +.+++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~-~~~~~ 181 (235)
T 2w0m_A 103 NLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFG-FGVEH 181 (235)
T ss_dssp SCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC------------CHHH
T ss_pred CCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccc-cchhe
Confidence 001122234455556667999 99999999665 541 1222 34569999999999831 12221 45677
Q ss_pred ccccccEEEe---CChHHHHHHHHHhhhccCCCCC-ceEEEEEEcC-ceEEe
Q 026207 153 LIGGVDTVTL---GDEEARARRCQKSILERKAPPT-FYFLIEMRER-HYWVT 199 (241)
Q Consensus 153 l~~~~d~V~~---~~~~~~~~~~~~~~k~r~g~~~-~~~~fe~~~~-g~~~~ 199 (241)
+ ||.|++ .+......+.+...|+|.++.. ....|++.+. |+.+.
T Consensus 182 ~---~d~vi~l~~~~~~~~~~r~l~v~K~r~~~~~~~~~~f~i~~~~Gi~~~ 230 (235)
T 2w0m_A 182 V---ADGIIRFRRMIRNGELHRYILIEKMRQTDHDKHVWEIDIVNGKGIVLK 230 (235)
T ss_dssp H---CSEEEEEEEEEETTEEEEEEEEEEETTCCCCCSCEEEEEETTTEEEEE
T ss_pred e---eeEEEEEEEEecCCcEEEEEEEEeccCCcccceeEEEEEcCCCCeEEe
Confidence 7 899987 2111111256677788877654 5678999988 88544
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=99.48 E-value=2.5e-14 Score=134.28 Aligned_cols=122 Identities=16% Similarity=0.166 Sum_probs=82.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCCC-------CC-cc---ccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGDG-------DI-PH---SAI 78 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~~-------~~-~~---~~~ 78 (241)
.++|+||||||||||++.+++.++|+.|. ++.|+.+...+.... .. +. ...
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 450 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQI 450 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHH
Confidence 79999999999999999999999877432 234443322111100 00 00 000
Q ss_pred -------cc---hh------------hcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCC
Q 026207 79 -------GT---AR------------RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERG 129 (241)
Q Consensus 79 -------~~---~~------------~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g 129 (241)
+. .. +...+|+|++|+..+++++..+|+++++|||++.+|+.... .. ..|
T Consensus 451 ~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~-~~~ 529 (582)
T 3b60_A 451 EEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDEL-QKN 529 (582)
T ss_dssp HHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHH-HTT
T ss_pred HHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHH-hCC
Confidence 00 00 11346778899999999999999999999999999995432 22 348
Q ss_pred cEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 130 VMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 130 ~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
.++|.++|..+ .+. . ||+|+.
T Consensus 530 ~tvi~itH~~~--------~~~-~---~d~i~~ 550 (582)
T 3b60_A 530 RTSLVIAHRLS--------TIE-Q---ADEIVV 550 (582)
T ss_dssp SEEEEECSCGG--------GTT-T---CSEEEE
T ss_pred CEEEEEeccHH--------HHH-h---CCEEEE
Confidence 99999999875 332 3 788877
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-14 Score=137.00 Aligned_cols=123 Identities=17% Similarity=0.201 Sum_probs=82.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCC----------CCCccccc-
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGD----------GDIPHSAI- 78 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~----------~~~~~~~~- 78 (241)
.+.|+||||||||||++.+++.++++.|. ++.|+.+...+... ........
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~ 450 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIV 450 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCCCCCHHHHH
Confidence 79999999999999999999999877432 23344332211100 00000000
Q ss_pred -----------------cch----hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH------HHHhCCcE
Q 026207 79 -----------------GTA----RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR------SIAERGVM 131 (241)
Q Consensus 79 -----------------~~~----~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~------~~~~~g~~ 131 (241)
+.. .+-..+|+|++|+..+++++..+|+++++|||++.+|+.... .....|+|
T Consensus 451 ~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t 530 (587)
T 3qf4_A 451 EAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCT 530 (587)
T ss_dssp HHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCE
T ss_pred HHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCE
Confidence 000 011235678899999999999999999999999999995432 12245899
Q ss_pred EEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 132 LIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 132 vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+|.++|..+ .+. . ||+|++
T Consensus 531 vi~itH~l~--------~~~-~---~d~i~v 549 (587)
T 3qf4_A 531 TFIITQKIP--------TAL-L---ADKILV 549 (587)
T ss_dssp EEEEESCHH--------HHT-T---SSEEEE
T ss_pred EEEEecChH--------HHH-h---CCEEEE
Confidence 999999875 332 3 788877
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=99.46 E-value=1.1e-14 Score=136.78 Aligned_cols=126 Identities=16% Similarity=0.166 Sum_probs=84.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCCCC-------Ccc---cccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGDGD-------IPH---SAIG 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~~~-------~~~---~~~~ 79 (241)
.+.|+||||||||||++.+++.++|+.|. ++.|+.+...+..... .+. ....
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 448 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVV 448 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHH
T ss_pred EEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCCCCHHHHH
Confidence 79999999999999999999999887432 2344443222211000 000 0000
Q ss_pred ch----------------------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH------HHHhCCcE
Q 026207 80 TA----------------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR------SIAERGVM 131 (241)
Q Consensus 80 ~~----------------------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~------~~~~~g~~ 131 (241)
.+ .+-..+|+|++|+..+++++..+|+++++|||++++|+.... .....+.|
T Consensus 449 ~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t 528 (578)
T 4a82_A 449 EAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRT 528 (578)
T ss_dssp HHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSE
T ss_pred HHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCE
Confidence 00 001236778899999999999999999999999999995432 22245789
Q ss_pred EEEeecCCChhhhhcCCccccccccccEEEe-CCh
Q 026207 132 LIGTAHGEWLENIIKNPILSDLIGGVDTVTL-GDE 165 (241)
Q Consensus 132 vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~-~~~ 165 (241)
++.++|..+ .+. . ||+|+. .++
T Consensus 529 ~i~itH~l~--------~~~-~---~d~i~~l~~G 551 (578)
T 4a82_A 529 TLIVAHRLS--------TIT-H---ADKIVVIENG 551 (578)
T ss_dssp EEEECSSGG--------GTT-T---CSEEEEEETT
T ss_pred EEEEecCHH--------HHH-c---CCEEEEEECC
Confidence 999999886 332 2 788887 443
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.45 E-value=6.9e-14 Score=131.67 Aligned_cols=68 Identities=16% Similarity=0.120 Sum_probs=55.1
Q ss_pred cCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCcccccccc
Q 026207 84 MQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGG 156 (241)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~ 156 (241)
...+|++++|++.+++++.++|+++++|||++++|+.... .....|.++|+++|..+ .+..+
T Consensus 219 ~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~--------~~~~~--- 287 (608)
T 3j16_B 219 IEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLS--------VLDYL--- 287 (608)
T ss_dssp TTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHH--------HHHHH---
T ss_pred hHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--------HHHHh---
Confidence 3456778999999999999999999999999999995432 33456899999999886 55556
Q ss_pred ccEEEe
Q 026207 157 VDTVTL 162 (241)
Q Consensus 157 ~d~V~~ 162 (241)
+|+|++
T Consensus 288 ~drv~v 293 (608)
T 3j16_B 288 SDFVCI 293 (608)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 777766
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=99.44 E-value=4.1e-13 Score=124.10 Aligned_cols=114 Identities=19% Similarity=0.216 Sum_probs=86.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCcE
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEV 107 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~v 107 (241)
.++|+||||||||||++++++.++++ .+++++++..|+.... +.+ .....+......+..+...+..+++++||+
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i~~~--~giitied~~E~~~~~--~~~-v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~ 336 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFIPPD--AKVVSIEDTREIKLYH--ENW-IAEVTRTGMGEGEIDMYDLLRAALRQRPDY 336 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGSCTT--CCEEEEESSCCCCCCC--SSE-EEEECBCCSSSCCBCHHHHHHTTGGGCCSE
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCCC--CCEEEEcCcccccCCC--CCe-EEEEeecccccCCcCHHHHHHHhhccCCCe
Confidence 69999999999999999999999877 6778888776664321 111 111111222334577888899999999999
Q ss_pred EEEcCCCCHHhHHHHHHHHhCCcEEEEeecCCChhhhhcC
Q 026207 108 IIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKN 147 (241)
Q Consensus 108 lilDE~~~~~d~~~~~~~~~~g~~vi~t~H~~~~~~~~~~ 147 (241)
++++|++..+ ...+.++.++|+.+++|.|++++.+++.+
T Consensus 337 iivgEir~~E-~~~~l~a~~tGh~~~sT~Ha~~~~~~l~R 375 (511)
T 2oap_1 337 IIVGEVRGRE-AQTLFQAMSTGHASYSTLHAGDINQMVYR 375 (511)
T ss_dssp EEESCCCSTH-HHHHHHHHHTTCEEEEEEECSSHHHHHHH
T ss_pred EEeCCcCHHH-HHHHHHhhcCCCCcccccccCCHHHHHHH
Confidence 9999999876 55566777889999999999998877654
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.43 E-value=7.5e-14 Score=131.47 Aligned_cols=123 Identities=16% Similarity=0.115 Sum_probs=83.1
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCCC----------CCcccccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGDG----------DIPHSAIG 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~~----------~~~~~~~~ 79 (241)
.+.|+||||||||||++.+++.+.++.|. ++.++.+...+.... ........
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~ 462 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIK 462 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCCCCCHHHHH
Confidence 79999999999999999999999877432 234444322211100 00000000
Q ss_pred ch----------hh------------cCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH------HHHhCCcE
Q 026207 80 TA----------RR------------MQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR------SIAERGVM 131 (241)
Q Consensus 80 ~~----------~~------------~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~------~~~~~g~~ 131 (241)
.+ .+ -..+|+|++|+..+++++..+|+++++|||++.+|+.... .....|+|
T Consensus 463 ~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t 542 (598)
T 3qf4_B 463 EAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKT 542 (598)
T ss_dssp HHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSE
T ss_pred HHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCE
Confidence 00 00 1246778899999999999999999999999999995432 11235899
Q ss_pred EEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 132 LIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 132 vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+|.++|..+ .+. . ||+|+.
T Consensus 543 ~i~itH~l~--------~~~-~---~d~i~~ 561 (598)
T 3qf4_B 543 SIIIAHRLN--------TIK-N---ADLIIV 561 (598)
T ss_dssp EEEESCCTT--------HHH-H---CSEEEE
T ss_pred EEEEecCHH--------HHH-c---CCEEEE
Confidence 999999987 332 2 788887
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.7e-13 Score=112.58 Aligned_cols=169 Identities=15% Similarity=0.061 Sum_probs=98.6
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCC--------CCCCcccc-----ccchh----hcC---
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGG--------DGDIPHSA-----IGTAR----RMQ--- 85 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~--------~~~~~~~~-----~~~~~----~~~--- 85 (241)
..+++|+||||+|||||+.+++....+. +.+++|++ .++... .+..++.. +.... .+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~-~~~v~~~~-~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~ 100 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKM-GEPGIYVA-LEEHPVQVRQNMAQFGWDVKPYEEKGMFAMVDAFTAGIGKSK 100 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHT-TCCEEEEE-SSSCHHHHHHHHHTTTCCCHHHHHHTSEEEEECSTTTTCC--
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEE-ccCCHHHHHHHHHHcCCCHHHHhhCCcEEEEecchhhccccc
Confidence 3389999999999999988887766544 57888887 333210 01111000 00000 000
Q ss_pred -----CCCCccc----HHHHHHHHHhcCCcEEEEcCCCCHH--hH---H-----HHHHHHhCCcEEEEeecCCChhhhhc
Q 026207 86 -----VPEPSLQ----HKVMIEAVENHMPEVIIVDEIGTEA--EA---H-----ACRSIAERGVMLIGTAHGEWLENIIK 146 (241)
Q Consensus 86 -----~~~~~~~----~~~~~~~~l~~~p~vlilDE~~~~~--d~---~-----~~~~~~~~g~~vi~t~H~~~~~~~~~ 146 (241)
....... ...+.+.+...+|+++++|+++... +. . ....+++.|++++.+.|..+......
T Consensus 101 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~ 180 (247)
T 2dr3_A 101 EYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFG 180 (247)
T ss_dssp CCCSCBCSCCSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC
T ss_pred ccccccccCccCHHHHHHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCccccc
Confidence 0000112 2223333345789999999998764 22 1 11234567999999999987333344
Q ss_pred CCccccccccccEEEe--CC-hHHHHHHHHHhhhccCCCCC-ceEEEEEEcCceEEe
Q 026207 147 NPILSDLIGGVDTVTL--GD-EEARARRCQKSILERKAPPT-FYFLIEMRERHYWVT 199 (241)
Q Consensus 147 ~p~l~~l~~~~d~V~~--~~-~~~~~~~~~~~~k~r~g~~~-~~~~fe~~~~g~~~~ 199 (241)
+|.+++. +|.|+. .+ ......+.+...|+|.++.. ....|++.+.|+.+.
T Consensus 181 ~~~~~~~---~D~vi~L~~~~~~~~~~r~l~v~K~R~~~~~~~~~~f~i~~~Gi~~~ 234 (247)
T 2dr3_A 181 GPGVEHG---VDGIIRLDLDEIDGELKRSLIVWKMRGTSHSMRRHPFDITDKGIIVY 234 (247)
T ss_dssp -CCHHHH---SSEEEEEEEEEETTEEEEEEEEEEETTSCCCCBCEEEEEETTEEEEC
T ss_pred cccccee---EEEEEEEEEEccCCeeEEEEEEEECCCCCCCCceEEEEEcCCCEEEe
Confidence 5667777 899887 11 11111266778899988765 677899999898543
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=3.3e-12 Score=115.25 Aligned_cols=111 Identities=20% Similarity=0.240 Sum_probs=85.2
Q ss_pred eccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCC-CcccHHHHHHHHHhc
Q 026207 25 IFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPE-PSLQHKVMIEAVENH 103 (241)
Q Consensus 25 ~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~ 103 (241)
..++++|+||||||||||++++++.+++. ..+|.+++++.|...... . +..+.. .+..+...+..++++
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~~~-~g~I~~~ed~ie~~~~~~-~--------q~~v~~~~g~~f~~~lr~~Lrq 235 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELNSS-ERNILTVEDPIEFDIDGI-G--------QTQVNPRVDMTFARGLRAILRQ 235 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHCCT-TSCEEEEESSCCSCCSSS-E--------EEECBGGGTBCHHHHHHHHGGG
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEEecccchhccCCc-c--------eEEEccccCcCHHHHHHHHhcc
Confidence 45689999999999999999999999876 457888886666432110 0 111111 256778888999999
Q ss_pred CCcEEEEcCCCCHHhHHHHHHHHhCCcEEEEeecCCChhhhh
Q 026207 104 MPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENII 145 (241)
Q Consensus 104 ~p~vlilDE~~~~~d~~~~~~~~~~g~~vi~t~H~~~~~~~~ 145 (241)
+|++++++|++..+.+.....+..+|+.++.|.|.++..+.+
T Consensus 236 ~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i 277 (418)
T 1p9r_A 236 DPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAV 277 (418)
T ss_dssp CCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHH
T ss_pred CCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHH
Confidence 999999999999887777777778899999999998865544
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.37 E-value=2.2e-12 Score=106.86 Aligned_cols=163 Identities=14% Similarity=0.067 Sum_probs=88.8
Q ss_pred cEEEEEeCCCchHHHHHHHHHHh--cccc---CCCeEEEEcCCcccCCCC-CC-ccccccch-----hhcCCCC--Cccc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARV--LSDE---FQKRVVIVDTSNEIGGDG-DI-PHSAIGTA-----RRMQVPE--PSLQ 92 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~--l~~~---~g~~v~~i~~~~e~~~~~-~~-~~~~~~~~-----~~~~~~~--~~~~ 92 (241)
.+++|+||||||||||++++++. .++. .+..++|++ .++..... .. ....++.. ..+.... ....
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 103 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID-TEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDH 103 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE-SSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEE-CCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecCCHHH
Confidence 38999999999999999999995 4331 136788988 33311000 00 00000000 0010000 0111
Q ss_pred H----HHHHHHHHhcCCcEEEEcCCCCHHhHH-------H-----HH--------HHHhCCcEEEEeecCCChhhh---h
Q 026207 93 H----KVMIEAVENHMPEVIIVDEIGTEAEAH-------A-----CR--------SIAERGVMLIGTAHGEWLENI---I 145 (241)
Q Consensus 93 ~----~~~~~~~l~~~p~vlilDE~~~~~d~~-------~-----~~--------~~~~~g~~vi~t~H~~~~~~~---~ 145 (241)
. ..+.+.+..++|++++|||++...+.. . .. .+.+.|++++++.|..+-.+. +
T Consensus 104 ~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~ 183 (243)
T 1n0w_A 104 QTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMF 183 (243)
T ss_dssp HHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC------------
T ss_pred HHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCcccc
Confidence 1 112333445789999999999876542 1 11 234469999999998752221 1
Q ss_pred ----cCC----ccccccccccEEEe---CChHHHHHHHHHhhhccCCCCCceEEEEEEcCceE
Q 026207 146 ----KNP----ILSDLIGGVDTVTL---GDEEARARRCQKSILERKAPPTFYFLIEMRERHYW 197 (241)
Q Consensus 146 ----~~p----~l~~l~~~~d~V~~---~~~~~~~~~~~~~~k~r~g~~~~~~~fe~~~~g~~ 197 (241)
..| .++++ ||.+++ +++. . +.+...|+|.++... ..|++.+.|+.
T Consensus 184 ~~~~~~~~g~~~~~~~---~d~vi~l~~~~~~--~-r~l~v~K~r~~~~~~-~~f~I~~~Gi~ 239 (243)
T 1n0w_A 184 AADPKKPIGGNIIAHA---STTRLYLRKGRGE--T-RICKIYDSPCLPEAE-AMFAINADGVG 239 (243)
T ss_dssp -------------CCT---TCEEEEEEECSTT--E-EEEEECCBTTBSCEE-EEEEEETTEEE
T ss_pred CCCcccCCccChhhhc---CcEEEEEEEcCCC--e-EEEEEEECCCCCCCe-EEEEEeCCccc
Confidence 011 25556 999888 3322 2 567778899887654 78999988873
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.36 E-value=2.9e-12 Score=125.65 Aligned_cols=124 Identities=17% Similarity=0.225 Sum_probs=81.5
Q ss_pred EEEEEeCCCchHHHHHHHHHH-hcc---ccCCCeEEEEcCCc-ccCCCCCC--------c--cc-------cccc-----
Q 026207 28 FFLSYFRPGVGKTTVMREIAR-VLS---DEFQKRVVIVDTSN-EIGGDGDI--------P--HS-------AIGT----- 80 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~-~l~---~~~g~~v~~i~~~~-e~~~~~~~--------~--~~-------~~~~----- 80 (241)
+++|+||||||||||++.|++ .+. .....++.|+.+.. .......+ . .. .++.
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL~~~~~ 542 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMI 542 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTTCCHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEcccccccccCCcHHHHHHHhhcCHHHHHHHHHHHcCCChhhh
Confidence 799999999999999999994 221 00012355655321 11100000 0 00 0010
Q ss_pred hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH----HHHhCCcEEEEeecCCChhhhhcCCcccccccc
Q 026207 81 ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR----SIAERGVMLIGTAHGEWLENIIKNPILSDLIGG 156 (241)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~----~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~ 156 (241)
......+|+|++++..+++++..+|+++|+|||++++|+.... .....|.++|+++|... .+.++
T Consensus 543 ~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~~g~tvIivSHdl~--------~l~~~--- 611 (986)
T 2iw3_A 543 AMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSV--------FLDNV--- 611 (986)
T ss_dssp HSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHHSCSEEEEECSCHH--------HHHHH---
T ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHhCCCEEEEEECCHH--------HHHHh---
Confidence 0123457889999999999999999999999999999995543 22236899999999876 45555
Q ss_pred ccEEEe
Q 026207 157 VDTVTL 162 (241)
Q Consensus 157 ~d~V~~ 162 (241)
||+|++
T Consensus 612 adrii~ 617 (986)
T 2iw3_A 612 CEYIIN 617 (986)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 677665
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.36 E-value=2.1e-13 Score=133.57 Aligned_cols=67 Identities=16% Similarity=0.127 Sum_probs=55.1
Q ss_pred CCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH----HHHhCCcEEEEeecCCChhhhhcCCccccccccccEE
Q 026207 85 QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR----SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTV 160 (241)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~----~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V 160 (241)
..+|+|++|+..+++++.++|++||+|||++++|+.... ...+.|.++|+++|... .+..+ ||+|
T Consensus 900 ~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIiISHD~e--------~v~~l---~DrV 968 (986)
T 2iw3_A 900 RGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAE--------FTKNL---TEEV 968 (986)
T ss_dssp GGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEEECSCHH--------HHTTT---CCEE
T ss_pred cccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEEEECCHH--------HHHHh---CCEE
Confidence 457778999999999999999999999999999996544 22344779999999876 55666 8988
Q ss_pred Ee
Q 026207 161 TL 162 (241)
Q Consensus 161 ~~ 162 (241)
+.
T Consensus 969 iv 970 (986)
T 2iw3_A 969 WA 970 (986)
T ss_dssp EC
T ss_pred EE
Confidence 87
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.35 E-value=3.3e-12 Score=112.72 Aligned_cols=161 Identities=14% Similarity=0.113 Sum_probs=92.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc--cccC---CCeEEEEcCCcccCCC---CCCcccc---ccc-hhhcCC---CC-Ccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL--SDEF---QKRVVIVDTSNEIGGD---GDIPHSA---IGT-ARRMQV---PE-PSL 91 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l--~~~~---g~~v~~i~~~~e~~~~---~~~~~~~---~~~-~~~~~~---~~-~~~ 91 (241)
++.|+||||||||||++++++.. ++.. +.+++|++ .++.... ...++.. ... ...+.+ .. ...
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~-~e~~~~~~~i~~i~q~~~~~~~~v~~ni~~~~~~~~~~~ 211 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWID-TENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQ 211 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEE-SSSCCCHHHHHHHHHTTTCCHHHHGGGEEEEECCSHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEe-CCCCCCHHHHHHHHHHcCCCHHHHhhCEEEEecCChHHH
Confidence 89999999999999999999988 4443 25888998 4433100 0000000 000 000001 11 111
Q ss_pred cHHHH-HHHHH-h-----cCCcEEEEcCCCCHHhHHH------------HH--------HHHhCCcEEEEeecCCChhhh
Q 026207 92 QHKVM-IEAVE-N-----HMPEVIIVDEIGTEAEAHA------------CR--------SIAERGVMLIGTAHGEWLENI 144 (241)
Q Consensus 92 ~~~~~-~~~~l-~-----~~p~vlilDE~~~~~d~~~------------~~--------~~~~~g~~vi~t~H~~~~~~~ 144 (241)
.+... +.... . .+|+++|+|||++.+|+.. .. .+...|+++|++.|..+-.+.
T Consensus 212 ~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~ 291 (349)
T 1pzn_A 212 MLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDA 291 (349)
T ss_dssp HHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-----
T ss_pred HHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccccccc
Confidence 11111 22222 2 5899999999999987631 11 234468999999998752221
Q ss_pred h-------cC-CccccccccccEEEe---CChHHHHHHHHHhhhccCCCCCceEEEEEEcCce
Q 026207 145 I-------KN-PILSDLIGGVDTVTL---GDEEARARRCQKSILERKAPPTFYFLIEMRERHY 196 (241)
Q Consensus 145 ~-------~~-p~l~~l~~~~d~V~~---~~~~~~~~~~~~~~k~r~g~~~~~~~fe~~~~g~ 196 (241)
. .. ..+++. ++.+++ ..+ . .|.++..++++++... ..|+|++.|+
T Consensus 292 ~~~~~~~~~~G~~l~~~---~~~rL~l~~~~~--~-~Ri~k~~ks~~~~~~~-~~f~It~~Gi 347 (349)
T 1pzn_A 292 FFGDPTRPIGGHILAHS---ATLRVYLRKGKG--G-KRIARLIDAPHLPEGE-AVFSITEKGI 347 (349)
T ss_dssp ----------CCCCCTT---CSEEEEEEECTT--S-EEEEEESCSSSSCCSE-EEEEEETTEE
T ss_pred ccCCccccCCcceEeec---CcEEEEEEEcCC--C-eEEEEEEeCCCCCCeE-EEEEEcCCCC
Confidence 1 11 134454 677666 222 1 2667777888877665 7999999886
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=7.4e-13 Score=105.17 Aligned_cols=114 Identities=12% Similarity=0.104 Sum_probs=68.6
Q ss_pred eecc-EEEEEeCCCchHHHHHH------------HHHHhccccCCCeEEEEcCCcccCCCCCCcc--ccccc---hhhcC
Q 026207 24 IIFD-FFLSYFRPGVGKTTVMR------------EIARVLSDEFQKRVVIVDTSNEIGGDGDIPH--SAIGT---ARRMQ 85 (241)
Q Consensus 24 ~~~g-~vll~Gp~GsGKTTLl~------------~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~--~~~~~---~~~~~ 85 (241)
+..| +++|+||||||||||++ .+.+.+.++.+.. .+. ............ ...+. .....
T Consensus 6 i~~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~ 82 (171)
T 4gp7_A 6 IPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMSDDENDQ--TVT-GAAFDVLHYIVSKRLQLGKLTVVDATN 82 (171)
T ss_dssp EESSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHHCSSTTCG--GGH-HHHHHHHHHHHHHHHHTTCCEEEESCC
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHhcCcccch--hhH-HHHHHHHHHHHHHHHhCCCeEEEECCC
Confidence 3344 89999999999999999 5555554442210 000 000000000000 00000 00111
Q ss_pred CCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHH----------------HH-------HHHhCCcEEEEeecCCC
Q 026207 86 VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA----------------CR-------SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~----------------~~-------~~~~~g~~vi~t~H~~~ 140 (241)
..+++.+++..++.++..+|+++++|||++++|+.. .. .....|.++|.++|..+
T Consensus 83 ~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~ 160 (171)
T 4gp7_A 83 VQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE 160 (171)
T ss_dssp CSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHH
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHH
Confidence 223467899999999999999999999999999862 11 23345999999999875
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.34 E-value=3.4e-13 Score=136.94 Aligned_cols=137 Identities=15% Similarity=0.238 Sum_probs=91.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCC--------C-CCCccc----------------------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGG--------D-GDIPHS---------------------- 76 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~--------~-~~~~~~---------------------- 76 (241)
.++|+||+|||||||++.|.+.+.+..|. +.++ +.++.. . ..+|+.
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~rl~~p~~G~--I~iD-G~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~s 1183 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLERFYDTLGGE--IFID-GSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVT 1183 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTTSSCCSSSE--EEET-TEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSC
T ss_pred EEEEECCCCChHHHHHHHHhcCccCCCCE--EEEC-CEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCC
Confidence 69999999999999999999999887553 4443 221110 0 000000
Q ss_pred --cc------------------cchhhc----CCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH---HHH---
Q 026207 77 --AI------------------GTARRM----QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR---SIA--- 126 (241)
Q Consensus 77 --~~------------------~~~~~~----~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~---~~~--- 126 (241)
.+ |.-..+ ..+|+|++|+..+++++..+|++++|||+++.+|++.-. ++.
T Consensus 1184 d~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~ 1263 (1321)
T 4f4c_A 1184 MAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRA 1263 (1321)
T ss_dssp HHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHH
Confidence 00 000001 124557799999999999999999999999999985332 222
Q ss_pred hCCcEEEEeecCCChhhhhcCCccccccccccEEEe-CChHHHHHHHHHhhhcc
Q 026207 127 ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL-GDEEARARRCQKSILER 179 (241)
Q Consensus 127 ~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~-~~~~~~~~~~~~~~k~r 179 (241)
..|+|+|+.+|-.+ .+.+ ||+|++ .+|.....+..+++.++
T Consensus 1264 ~~~~TvI~IAHRLs--------Ti~~----aD~I~Vld~G~IvE~Gth~eLl~~ 1305 (1321)
T 4f4c_A 1264 REGRTCIVIAHRLN--------TVMN----ADCIAVVSNGTIIEKGTHTQLMSE 1305 (1321)
T ss_dssp SSSSEEEEECSSSS--------TTTT----CSEEEEESSSSEEEEECHHHHHHC
T ss_pred cCCCEEEEeccCHH--------HHHh----CCEEEEEECCEEEEECCHHHHHhC
Confidence 35899999999886 4444 799998 55544334666777665
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=3.4e-12 Score=104.15 Aligned_cols=164 Identities=16% Similarity=0.098 Sum_probs=96.1
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCC-ccccccc-----hhhcCC--CCCcccHHHHH
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDI-PHSAIGT-----ARRMQV--PEPSLQHKVMI 97 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~-~~~~~~~-----~~~~~~--~~~~~~~~~~~ 97 (241)
..+++|+||||+|||||++++++ .+ +.+++|++........... .....+. ...+.. .+....++..+
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~--~~--~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL--LS--GKKVAYVDTEGGFSPERLVQMAETRGLNPEEALSRFILFTPSDFKEQRRVI 95 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH--HH--CSEEEEEESSCCCCHHHHHHHHHTTTCCHHHHHHHEEEECCTTTSHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--Hc--CCcEEEEECCCCCCHHHHHHHHHhcCCChHHHhhcEEEEecCCHHHHHHHH
Confidence 34899999999999999999999 22 4789999833211100000 0000000 001111 12223333333
Q ss_pred HH--HHhc-CCcEEEEcCCCCHHhH--------H----H---HH-HHHhCCcEEEEeecCCChhh-hhcCC----ccccc
Q 026207 98 EA--VENH-MPEVIIVDEIGTEAEA--------H----A---CR-SIAERGVMLIGTAHGEWLEN-IIKNP----ILSDL 153 (241)
Q Consensus 98 ~~--~l~~-~p~vlilDE~~~~~d~--------~----~---~~-~~~~~g~~vi~t~H~~~~~~-~~~~p----~l~~l 153 (241)
+. ++.. +|+++|+|||++.++. . . +. .+++.|++++++.|..+..+ .-..| .++++
T Consensus 96 ~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~ 175 (220)
T 2cvh_A 96 GSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYR 175 (220)
T ss_dssp HHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHT
T ss_pred HHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeec
Confidence 32 3333 5999999999988653 1 1 11 23455899999999875211 11123 24556
Q ss_pred cccccEEEe---CChHHHHHHHHHhhhccCCCCCceEEEEEEcCceEE
Q 026207 154 IGGVDTVTL---GDEEARARRCQKSILERKAPPTFYFLIEMRERHYWV 198 (241)
Q Consensus 154 ~~~~d~V~~---~~~~~~~~~~~~~~k~r~g~~~~~~~fe~~~~g~~~ 198 (241)
||.|+. .+... .+.+...|+|.++......|++.+.|+.+
T Consensus 176 ---~d~vi~l~~~~~~~--~r~l~v~K~r~~~~~~~~~f~I~~~Gi~~ 218 (220)
T 2cvh_A 176 ---CKDILRLDKLPKPG--LRVAVLERHRFRPEGLMAYFRITERGIED 218 (220)
T ss_dssp ---SSEEEEEEECSSTT--EEEEEEEECSSSCTTCEEEEEEETTEEEE
T ss_pred ---CcEEEEEEEecCCC--EEEEEEEeCCCCCCCceEEEEEeCCceec
Confidence 899888 22121 25667778998888777889999988743
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=2e-12 Score=111.04 Aligned_cols=155 Identities=15% Similarity=0.137 Sum_probs=83.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCC----C-----CCCcccc---c--c------------ch
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGG----D-----GDIPHSA---I--G------------TA 81 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~----~-----~~~~~~~---~--~------------~~ 81 (241)
+++|+||||+|||||++++++.+.+..|.+|+++. .+.... . ....... + + ..
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~-~e~~~~~~~~r~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 115 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM-LEESVEETAEDLIGLHNRVRLRQSDSLKREIIENGKFDQWFDEL 115 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE-SSSCHHHHHHHHHHHHTTCCGGGCHHHHHHHHHHTHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe-CcCCHHHHHHHHHHHHcCCChhhccccccCCCCHHHHHHHHHHH
Confidence 89999999999999999999999877566788876 222100 0 0000000 0 0 00
Q ss_pred ---hhcCCCC--Cccc----HHHHHHHHHhcCCcEEEEcCCCCHH------hH-HH-------HHH-HHhCCcEEEEeec
Q 026207 82 ---RRMQVPE--PSLQ----HKVMIEAVENHMPEVIIVDEIGTEA------EA-HA-------CRS-IAERGVMLIGTAH 137 (241)
Q Consensus 82 ---~~~~~~~--~~~~----~~~~~~~~l~~~p~vlilDE~~~~~------d~-~~-------~~~-~~~~g~~vi~t~H 137 (241)
..+.+.+ .... ...+.+.++.++|++||+|||+... +. .. +.. +++.|++||+++|
T Consensus 116 l~~~~l~i~~~~~~~~~~~l~~~~~a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh 195 (296)
T 1cr0_A 116 FGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICH 195 (296)
T ss_dssp HSSSCEEEECCCCSCCHHHHHHHHHHHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEE
T ss_pred hccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEe
Confidence 0011111 1111 1222255578899999999999832 22 11 112 3456999999999
Q ss_pred CCChhh-----hhcCC---------ccccccccccEEEe---CChH-HHHHHHHHhhhccC-CCCCce
Q 026207 138 GEWLEN-----IIKNP---------ILSDLIGGVDTVTL---GDEE-ARARRCQKSILERK-APPTFY 186 (241)
Q Consensus 138 ~~~~~~-----~~~~p---------~l~~l~~~~d~V~~---~~~~-~~~~~~~~~~k~r~-g~~~~~ 186 (241)
.....+ .-.+| .++++ ||.|++ ++.. ....+.+...|+|+ |+....
T Consensus 196 ~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~---aD~vi~L~~~~~~~~~~~~~l~i~K~R~~g~~g~~ 260 (296)
T 1cr0_A 196 LKNPDKGKAHEEGRPVSITDLRGSGALRQL---SDTIIALERNQQGDMPNLVLVRILKCRFTGDTGIA 260 (296)
T ss_dssp CC-----------------CCC---CHHHH---CSEEEEEEEC-------CEEEEEEEETTTCCCEEE
T ss_pred cCccccccccccCCCCCHHHhcccHHhHhh---CcEEEEEecCcccCCCCeEEEEEEccccCCCCCce
Confidence 973121 11223 34555 999988 3321 11114566778996 876643
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.32 E-value=1.7e-12 Score=104.04 Aligned_cols=110 Identities=19% Similarity=0.083 Sum_probs=64.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccC-CCeEEEEcCCcccCCC-CCCcc------ccccc---------hhhcCCCCCc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEF-QKRVVIVDTSNEIGGD-GDIPH------SAIGT---------ARRMQVPEPS 90 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~-g~~v~~i~~~~e~~~~-~~~~~------~~~~~---------~~~~~~~~~~ 90 (241)
.++|+||||||||||++.+++.+.-.. |...-..... +.... +..++ ..+.. ......+|++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~-~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSgG 80 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDP-ETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYF 80 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC-------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccc-cccceeEEEeecCcHHHHHHHhhcCCccccccccccCcCHH
Confidence 478999999999999999999874210 1000000000 00000 00000 00000 0112224557
Q ss_pred ccHHHHHHHH-----HhcCCcEEEEcC--CCCHHhHHHHH---HH-HhCCcEEEEeecC
Q 026207 91 LQHKVMIEAV-----ENHMPEVIIVDE--IGTEAEAHACR---SI-AERGVMLIGTAHG 138 (241)
Q Consensus 91 ~~~~~~~~~~-----l~~~p~vlilDE--~~~~~d~~~~~---~~-~~~g~~vi~t~H~ 138 (241)
++++..++.+ +..+|+++++|| |++.+|+.... .. .+.+.++++++|.
T Consensus 81 ~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H~ 139 (178)
T 1ye8_A 81 EELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPI 139 (178)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCS
T ss_pred HHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEcc
Confidence 7899999886 899999999999 99999885433 32 2346668888873
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.2e-12 Score=114.05 Aligned_cols=156 Identities=13% Similarity=0.070 Sum_probs=98.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCC------CcccHHHHHHH--
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPE------PSLQHKVMIEA-- 99 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~-- 99 (241)
+++|+||||||||||+.+++..+.+. +.+++|++ .++.... . ++.++.+.. .....+..+..
T Consensus 63 i~~I~GppGsGKSTLal~la~~~~~~-gg~VlyId-~E~s~~~------~--ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 63 IVEIFGQESSGKTTLALHAIAEAQKM-GGVAAFID-AEHALDP------V--YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEEE-SSCCCCH------H--HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEe-cccccch------H--HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 89999999999999999999988765 56889998 4443211 0 112222211 11122222222
Q ss_pred --HHhcCCcEEEEcCCCCHHh----------------HHHH--------HHHHhCCcEEEEeecCCChhhh-hcC-----
Q 026207 100 --VENHMPEVIIVDEIGTEAE----------------AHAC--------RSIAERGVMLIGTAHGEWLENI-IKN----- 147 (241)
Q Consensus 100 --~l~~~p~vlilDE~~~~~d----------------~~~~--------~~~~~~g~~vi~t~H~~~~~~~-~~~----- 147 (241)
+....|+++++|+++.... +..+ ..+.+.|+++|++.|..+-.+. +..
T Consensus 133 ~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~inqv~~k~g~~fg~p~~~~ 212 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQIRMKIGVMFGSPETTT 212 (356)
T ss_dssp HHHHTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEESSSCSSSSSCSCSSCT
T ss_pred HHhhhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeeeeccccccCCcccCC
Confidence 2236799999999876543 1111 1345679999999998432332 211
Q ss_pred -C-ccccccccccEEEe-C--------ChHHHHHHHHHhhhccCCCCCceEEEEEE-cCce
Q 026207 148 -P-ILSDLIGGVDTVTL-G--------DEEARARRCQKSILERKAPPTFYFLIEMR-ERHY 196 (241)
Q Consensus 148 -p-~l~~l~~~~d~V~~-~--------~~~~~~~~~~~~~k~r~g~~~~~~~fe~~-~~g~ 196 (241)
+ .++|+ +|.++. . +......+.++.+||+++++.....|+|. +.|+
T Consensus 213 GG~~l~h~---~~~rl~l~k~~~~k~g~~~~g~~~~vkvvKnr~~~~~~~~~f~i~~~~Gi 270 (356)
T 3hr8_A 213 GGLALKFY---ATMRMEVRRGEPIKEGKDVIGNVISVKIVKNKVAPPFKTAQTYIIYGKGI 270 (356)
T ss_dssp HHHHHHHH---CSEEEEEEEEEEEEETTEEEEEEEEEEEEEESSSCCCCEEEEEEETTTBS
T ss_pred Ccchhhhh---CcEEEEEEeccccccCCcccccEEEEEEEeCCCCCCCceEEEEEeeCCCc
Confidence 2 36677 888776 2 11111126678899999999999999995 7776
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.31 E-value=4.7e-12 Score=120.69 Aligned_cols=56 Identities=14% Similarity=0.134 Sum_probs=46.8
Q ss_pred CCCCCcccHHHHHHHHHhcCCc--EEEEcCCCCHHhHHH-------HHHHHhCCcEEEEeecCCC
Q 026207 85 QVPEPSLQHKVMIEAVENHMPE--VIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEW 140 (241)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~p~--vlilDE~~~~~d~~~-------~~~~~~~g~~vi~t~H~~~ 140 (241)
..+|++++|++.+++++.++|+ ++++|||++++|+.. +...++.|.++|+++|..+
T Consensus 201 ~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~ 265 (670)
T 3ux8_A 201 GTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDED 265 (670)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHH
T ss_pred ccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 3467789999999999999988 999999999999832 2344556999999999875
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.2e-12 Score=132.95 Aligned_cols=123 Identities=18% Similarity=0.202 Sum_probs=82.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCC----------CCCcccc--
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGD----------GDIPHSA-- 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~----------~~~~~~~-- 77 (241)
.++|+||+|||||||++.|++.+.+..|. ++.|+.+..-+... .......
T Consensus 446 ~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~ 525 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMV 525 (1321)
T ss_dssp EEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHH
T ss_pred EEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccchHHHHH
Confidence 79999999999999999999999887443 23444432221110 0000000
Q ss_pred -----------c-----cchhhc----CCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHH---HH---HHHhCCcE
Q 026207 78 -----------I-----GTARRM----QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA---CR---SIAERGVM 131 (241)
Q Consensus 78 -----------~-----~~~~~~----~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~---~~---~~~~~g~~ 131 (241)
+ |....+ ..+|+|++||..+++++..+|+++++|||++.+|++. +. .....|+|
T Consensus 526 ~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T 605 (1321)
T 4f4c_A 526 AACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRT 605 (1321)
T ss_dssp HHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSE
T ss_pred HHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCE
Confidence 0 000001 1256678999999999999999999999999999832 11 22346899
Q ss_pred EEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 132 LIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 132 vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+|.++|..+ .+.+ ||.|+.
T Consensus 606 ~iiiaHrls--------~i~~----aD~Iiv 624 (1321)
T 4f4c_A 606 TIIIAHRLS--------TIRN----ADLIIS 624 (1321)
T ss_dssp EEEECSCTT--------TTTT----CSEEEE
T ss_pred EEEEcccHH--------HHHh----CCEEEE
Confidence 999999886 4433 688887
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=7.5e-12 Score=112.33 Aligned_cols=159 Identities=13% Similarity=0.068 Sum_probs=94.3
Q ss_pred cEEEEEeCCCchHHHHHHHHH--Hhcccc---CCCeEEEEcCCcccCCCCCCccccccchhhcCC-------------CC
Q 026207 27 DFFLSYFRPGVGKTTVMREIA--RVLSDE---FQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQV-------------PE 88 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~--~~l~~~---~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~-------------~~ 88 (241)
.+++|+||||||||||+++++ ...++. .+.+++|++ .++... +......+.++.. ..
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid-~E~~~~----~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYID-TEGTFR----PVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE-SSSCCC----HHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEe-CCCccC----HHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 389999999999999999765 444332 236789998 443211 0000000111111 01
Q ss_pred CcccHHH----HHHHHHhcCCcEEEEcCCCCHHhHH-------------------HHH-HHHhCCcEEEEeecCCChh-h
Q 026207 89 PSLQHKV----MIEAVENHMPEVIIVDEIGTEAEAH-------------------ACR-SIAERGVMLIGTAHGEWLE-N 143 (241)
Q Consensus 89 ~~~~~~~----~~~~~l~~~p~vlilDE~~~~~d~~-------------------~~~-~~~~~g~~vi~t~H~~~~~-~ 143 (241)
....+.. +.+.+...+|+++++||+++.++.. .+. .+++.|+++|++.|..... +
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g 333 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDG 333 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC------
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCc
Confidence 1111122 2233445789999999998765431 111 3445699999999984322 2
Q ss_pred --hhc-------C-CccccccccccEEEe---CChHHHHHHHHHhhhccCCCCCceEEEEEEcCceE
Q 026207 144 --IIK-------N-PILSDLIGGVDTVTL---GDEEARARRCQKSILERKAPPTFYFLIEMRERHYW 197 (241)
Q Consensus 144 --~~~-------~-p~l~~l~~~~d~V~~---~~~~~~~~~~~~~~k~r~g~~~~~~~fe~~~~g~~ 197 (241)
.+. . ..++++ +|.+++ +++. .|.++.+|+|+++... ..|+|++.|+.
T Consensus 334 ~~~~~g~~~~p~gg~~l~~~---ad~vl~L~~~~g~---~R~l~v~K~R~~p~~e-~~F~It~~Gi~ 393 (400)
T 3lda_A 334 GMAFNPDPKKPIGGNIMAYS---STTRLGFKKGKGC---QRLCKVVDSPCLPEAE-CVFAIYEDGVG 393 (400)
T ss_dssp --------------CHHHHH---CSEEEEEEECSTT---EEEEEEEECSSSCSCE-EEEEEETTEEE
T ss_pred cccccCCCccCCchhHHHHh---cceEEEEEecCCC---cEEEEEEcCCCCCCCc-eEEEEeCCccc
Confidence 111 1 245677 899887 4332 2778889999999886 89999999983
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=2.1e-12 Score=130.82 Aligned_cols=123 Identities=16% Similarity=0.179 Sum_probs=82.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCCC--------C----Ccccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGDG--------D----IPHSA 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~~--------~----~~~~~ 77 (241)
.+.|+||||||||||++.|++...+..|. ++.++.+...+.... . .....
T Consensus 1061 ~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~ 1140 (1284)
T 3g5u_A 1061 TLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEE 1140 (1284)
T ss_dssp EEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHHH
Confidence 79999999999999999999999876332 234444322111000 0 00000
Q ss_pred c------------------cchh----hcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH------HHHhCC
Q 026207 78 I------------------GTAR----RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR------SIAERG 129 (241)
Q Consensus 78 ~------------------~~~~----~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~------~~~~~g 129 (241)
+ +.-. +-..+|+|.+|+..+++++..+|+++++|||++++|+.... .....|
T Consensus 1141 i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~ 1220 (1284)
T 3g5u_A 1141 IVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREG 1220 (1284)
T ss_dssp HHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCC
Confidence 0 0000 01235678899999999999999999999999999995332 223458
Q ss_pred cEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 130 VMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 130 ~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+|+|+++|..+ .+ .. ||+|+.
T Consensus 1221 ~tvi~isH~l~--------~i-~~---~dri~v 1241 (1284)
T 3g5u_A 1221 RTCIVIAHRLS--------TI-QN---ADLIVV 1241 (1284)
T ss_dssp SCEEEECSCTT--------GG-GS---CSEEEE
T ss_pred CEEEEEecCHH--------HH-Hc---CCEEEE
Confidence 99999999987 33 22 788887
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=2.6e-12 Score=130.18 Aligned_cols=123 Identities=15% Similarity=0.114 Sum_probs=82.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCCCC----------Ccccc--
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGDGD----------IPHSA-- 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~~~----------~~~~~-- 77 (241)
.+.|+||||||||||++.|++.+.++.|. ++.++.+...+..... .....
T Consensus 418 ~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~ 497 (1284)
T 3g5u_A 418 TVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIE 497 (1284)
T ss_dssp EEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCHHHHH
Confidence 79999999999999999999999887432 1334433221111000 00000
Q ss_pred -----------c-----cch----hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH------HHHhCCcE
Q 026207 78 -----------I-----GTA----RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR------SIAERGVM 131 (241)
Q Consensus 78 -----------~-----~~~----~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~------~~~~~g~~ 131 (241)
+ +.. .+-..+|+|++|+..+++++..+|+++++|||++.+|++... .....|+|
T Consensus 498 ~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t 577 (1284)
T 3g5u_A 498 KAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRT 577 (1284)
T ss_dssp HHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSE
T ss_pred HHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCE
Confidence 0 000 001135678899999999999999999999999999995432 22346899
Q ss_pred EEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 132 LIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 132 vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+|.++|..+ .+. - ||+|+.
T Consensus 578 ~i~itH~l~--------~i~-~---~d~i~v 596 (1284)
T 3g5u_A 578 TIVIAHRLS--------TVR-N---ADVIAG 596 (1284)
T ss_dssp EEEECSCHH--------HHT-T---CSEEEE
T ss_pred EEEEecCHH--------HHH-c---CCEEEE
Confidence 999999875 332 2 688877
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.9e-12 Score=106.28 Aligned_cols=110 Identities=15% Similarity=0.089 Sum_probs=67.3
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEE-EEc-CCcccCCC-CCCcccc---c-cch----hh------------
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVV-IVD-TSNEIGGD-GDIPHSA---I-GTA----RR------------ 83 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~-~i~-~~~e~~~~-~~~~~~~---~-~~~----~~------------ 83 (241)
.++.|+||||||||||++.+++. +++.|.--. .+. ...+.... +.+++.. + ... ..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~~enl~~~~~~~~~~~~~~~~~~~~~~ 101 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTLNEKIDPYLRPLHDALRDMVEPEVIPK 101 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC------CTTTHHHHHHHTTTSCTTHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 38999999999999999999999 877553111 011 01111111 2222211 1 000 00
Q ss_pred -cCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHHHHH---hCCcEEEEeecCCC
Q 026207 84 -MQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIA---ERGVMLIGTAHGEW 140 (241)
Q Consensus 84 -~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~~~~---~~g~~vi~t~H~~~ 140 (241)
+.. .-+++|+..+++++..+|+++++|||+++ ....+.... ..|.++| ++|..+
T Consensus 102 ~l~~-glGq~qrv~lAraL~~~p~lllLDEPts~-~~~~l~~~l~~l~~g~tii-vtHd~~ 159 (208)
T 3b85_A 102 LMEA-GIVEVAPLAYMRGRTLNDAFVILDEAQNT-TPAQMKMFLTRLGFGSKMV-VTGDIT 159 (208)
T ss_dssp HHHT-TSEEEEEGGGGTTCCBCSEEEEECSGGGC-CHHHHHHHHTTBCTTCEEE-EEEC--
T ss_pred HHHh-CCchHHHHHHHHHHhcCCCEEEEeCCccc-cHHHHHHHHHHhcCCCEEE-EECCHH
Confidence 001 22778888999999999999999999998 444443322 3588899 999876
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1e-11 Score=110.21 Aligned_cols=55 Identities=7% Similarity=0.002 Sum_probs=45.1
Q ss_pred CCCCcccHHHHHHHHHh------cCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCC
Q 026207 86 VPEPSLQHKVMIEAVEN------HMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 86 ~~~~~~~~~~~~~~~l~------~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~ 140 (241)
.+|+|++++..++.++. .+|+++++|||++++|+.... .....|.++++++|...
T Consensus 279 ~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~ 346 (365)
T 3qf7_A 279 GLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDRE 346 (365)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHH
T ss_pred hCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchH
Confidence 46778899999988887 799999999999999995443 23446899999999875
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.23 E-value=3.9e-11 Score=106.29 Aligned_cols=114 Identities=14% Similarity=0.165 Sum_probs=76.6
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchh-hcCCC--CCcccHHHHHHHHHhc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTAR-RMQVP--EPSLQHKVMIEAVENH 103 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~l~~ 103 (241)
.+++|+||||||||||++++++.+++. ...+++++..++.... .....+... +-... ....+++..++.++++
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~~~--~g~I~ie~~~e~~~~~--~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~ 251 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIPFD--QRLITIEDVPELFLPD--HPNHVHLFYPSEAKEEENAPVTAATLLRSCLRM 251 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSCTT--SCEEEEESSSCCCCTT--CSSEEEEECC----------CCHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCCC--ceEEEECCccccCccc--cCCEEEEeecCccccccccccCHHHHHHHHHhc
Confidence 389999999999999999999999877 4557787555443210 011111111 11111 1456888999999999
Q ss_pred CCcEEEEcCCCCHHhHHHHHHHHhCCcE-EEEeecCCChhhhh
Q 026207 104 MPEVIIVDEIGTEAEAHACRSIAERGVM-LIGTAHGEWLENII 145 (241)
Q Consensus 104 ~p~vlilDE~~~~~d~~~~~~~~~~g~~-vi~t~H~~~~~~~~ 145 (241)
+|+.+++||++...... ...+...|+. +++++|.++..+..
T Consensus 252 ~pd~~l~~e~r~~~~~~-~l~~l~~g~~~~l~t~H~~~~~~~~ 293 (361)
T 2gza_A 252 KPTRILLAELRGGEAYD-FINVAASGHGGSITSCHAGSCELTF 293 (361)
T ss_dssp CCSEEEESCCCSTHHHH-HHHHHHTTCCSCEEEEECSSHHHHH
T ss_pred CCCEEEEcCchHHHHHH-HHHHHhcCCCeEEEEECCCCHHHHH
Confidence 99999999999764333 4445566764 79999999855544
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.7e-11 Score=116.74 Aligned_cols=56 Identities=14% Similarity=0.124 Sum_probs=46.1
Q ss_pred CCCCCcccHHHHHHHHHhcCC---cEEEEcCCCCHHhHHHH-------HHHHhCCcEEEEeecCCC
Q 026207 85 QVPEPSLQHKVMIEAVENHMP---EVIIVDEIGTEAEAHAC-------RSIAERGVMLIGTAHGEW 140 (241)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~p---~vlilDE~~~~~d~~~~-------~~~~~~g~~vi~t~H~~~ 140 (241)
..+|+|++|++.+++++.++| +++++|||++++|+... ....+.|.++|+++|..+
T Consensus 542 ~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~ 607 (670)
T 3ux8_A 542 TTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD 607 (670)
T ss_dssp GGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH
T ss_pred hhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 346778999999999998876 59999999999998433 244456999999999885
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.2e-11 Score=110.98 Aligned_cols=53 Identities=13% Similarity=0.101 Sum_probs=44.3
Q ss_pred CCCcccHHHHHHHHHhcCC--cEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCC
Q 026207 87 PEPSLQHKVMIEAVENHMP--EVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p--~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~ 140 (241)
.|+|++++..++.++..+| +++|+|||++++|+.... ... .|.++|+++|...
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~~ 357 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQ 357 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHH
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcHH
Confidence 5778999999999999999 999999999999995443 222 4899999999853
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.12 E-value=1e-10 Score=90.95 Aligned_cols=84 Identities=13% Similarity=0.145 Sum_probs=59.2
Q ss_pred eccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcC
Q 026207 25 IFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHM 104 (241)
Q Consensus 25 ~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 104 (241)
....++|+||||+|||||++++++.+.+. |.++++++ ..++... .+..+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~-g~~~~~~~-~~~~~~~-----------------------------~~~~~ 83 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEA-GKNAAYID-AASMPLT-----------------------------DAAFE 83 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTT-TCCEEEEE-TTTSCCC-----------------------------GGGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhc-CCcEEEEc-HHHhhHH-----------------------------HHHhC
Confidence 44589999999999999999999988764 67788887 4443110 12357
Q ss_pred CcEEEEcCCCCHHhHH--H----HHHHHhCCcE-EEEeecCC
Q 026207 105 PEVIIVDEIGTEAEAH--A----CRSIAERGVM-LIGTAHGE 139 (241)
Q Consensus 105 p~vlilDE~~~~~d~~--~----~~~~~~~g~~-vi~t~H~~ 139 (241)
|+++++||++...+.. . +....+.|.+ +|+|+|..
T Consensus 84 ~~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~~ 125 (149)
T 2kjq_A 84 AEYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEYT 125 (149)
T ss_dssp CSEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESSC
T ss_pred CCEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCCC
Confidence 9999999998754321 1 1233455776 78888854
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=6.5e-11 Score=114.81 Aligned_cols=65 Identities=14% Similarity=0.124 Sum_probs=52.1
Q ss_pred CCCCcccHHHHHHHHHhcC---CcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccc
Q 026207 86 VPEPSLQHKVMIEAVENHM---PEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIG 155 (241)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~---p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~ 155 (241)
.+|+|++|+..++.++..+ |+++|+|||++++|+.... ...+.|.+||+++|..+ .+ ..
T Consensus 730 ~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~--------~i-~~-- 798 (842)
T 2vf7_A 730 ELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQ--------VV-AA-- 798 (842)
T ss_dssp GCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--------HH-TT--
T ss_pred cCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH--------HH-Hh--
Confidence 3566789999999999986 7999999999999884332 34567999999999875 44 45
Q ss_pred cccEEEe
Q 026207 156 GVDTVTL 162 (241)
Q Consensus 156 ~~d~V~~ 162 (241)
||+|+.
T Consensus 799 -aDrii~ 804 (842)
T 2vf7_A 799 -SDWVLD 804 (842)
T ss_dssp -CSEEEE
T ss_pred -CCEEEE
Confidence 888876
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=8e-11 Score=93.61 Aligned_cols=98 Identities=15% Similarity=0.083 Sum_probs=60.4
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPE 106 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~ 106 (241)
..++|+||||+|||||++++++.+.+..|..+++++ ..++.. .... ... ..... ..+.. ..+|+
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~-~~~~~~------~~~~---~~~--~~~~~--~~~~~--~~~~~ 102 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFD-TKDLIF------RLKH---LMD--EGKDT--KFLKT--VLNSP 102 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEE-HHHHHH------HHHH---HHH--HTCCS--HHHHH--HHTCS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEE-HHHHHH------HHHH---Hhc--CchHH--HHHHH--hcCCC
Confidence 479999999999999999999998755566667765 332210 0000 000 00011 12222 24899
Q ss_pred EEEEcCCCC-HHhHHHH-------HHHHhCCcEEEEeecCCC
Q 026207 107 VIIVDEIGT-EAEAHAC-------RSIAERGVMLIGTAHGEW 140 (241)
Q Consensus 107 vlilDE~~~-~~d~~~~-------~~~~~~g~~vi~t~H~~~ 140 (241)
++|+|||+. ..|+... ....+.|.++|+|+|...
T Consensus 103 llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 103 VLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp EEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCS
T ss_pred EEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCCh
Confidence 999999984 4444221 133446888888888774
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.06 E-value=7.1e-10 Score=94.38 Aligned_cols=169 Identities=11% Similarity=0.052 Sum_probs=85.8
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcccc---------CCCeEEEEcCCcccCCC--------CCCccc-cc-cchhhc---
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDE---------FQKRVVIVDTSNEIGGD--------GDIPHS-AI-GTARRM--- 84 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~---------~g~~v~~i~~~~e~~~~--------~~~~~~-~~-~~~~~~--- 84 (241)
.+++|+||||||||||++++++.+... .+.+++|++ .++.... +..... .. .....+
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~-~e~~~~~~~~r~~~~g~~~~~~~~~~~~~~l~l~ 109 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLP-AEDPPTAIHHRLHALGAHLSAEERQAVADGLLIQ 109 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEE-SSSCHHHHHHHHHHHHTTSCHHHHHHHHHHEEEC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEE-CCCCHHHHHHHHHHHHhhcChhhhhhccCceEEe
Confidence 389999999999999999999876542 125677876 3332100 000000 00 000011
Q ss_pred -------CCCCCcccHHHHHHHHHhcCCcEEEEcCCCC--HHhH------H----HHHH-HHhCCcEEEEeecCCChhhh
Q 026207 85 -------QVPEPSLQHKVMIEAVENHMPEVIIVDEIGT--EAEA------H----ACRS-IAERGVMLIGTAHGEWLENI 144 (241)
Q Consensus 85 -------~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~--~~d~------~----~~~~-~~~~g~~vi~t~H~~~~~~~ 144 (241)
..++.+. ...+ .++..+|++||||||++ ..|. . .+.. +++.|+++|+++|..+....
T Consensus 110 ~~~~~~~~~ls~g~--~~~i-~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~~~~~ 186 (279)
T 1nlf_A 110 PLIGSLPNIMAPEW--FDGL-KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASKGAAM 186 (279)
T ss_dssp CCTTSCCCTTSHHH--HHHH-HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC------
T ss_pred ecCCCCcccCCHHH--HHHH-HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCCCcccc
Confidence 1112221 1222 23445899999999998 4443 1 1122 34669999999998863211
Q ss_pred hc-CC------ccccccccccEEEe----CChHHH-------HH-HH--HHhhhccCCCCCceEEEEEEcCceEEe
Q 026207 145 IK-NP------ILSDLIGGVDTVTL----GDEEAR-------AR-RC--QKSILERKAPPTFYFLIEMRERHYWVT 199 (241)
Q Consensus 145 ~~-~p------~l~~l~~~~d~V~~----~~~~~~-------~~-~~--~~~~k~r~g~~~~~~~fe~~~~g~~~~ 199 (241)
.. ++ ....+...+..+.+ ++.... .+ .. +...|+|++++.-...|+..+.|.+..
T Consensus 187 ~g~~~~~~~~~g~~~l~d~v~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~v~K~~~~~~~~~~~~~~~~~G~l~~ 262 (279)
T 1nlf_A 187 MGAGDQQQASRGSSVLVDNIRWQSYLSSMTSAEAEEWGVDDDQRRFFVRFGVSKANYGAPFADRWFRRHDGGVLKP 262 (279)
T ss_dssp --------------CTGGGCSCEEEEEECCHHHHHHTTCCTTSGGGEEEEEEEECSSSSCCCCEEEEECGGGCEEE
T ss_pred cCCchhhhhccchhhhccchhhhhhccCCCHHHHHHhCCChhhcCcEEEeeeccccCCCCCCceEEEEcCCeeEec
Confidence 11 11 11223112322222 211110 00 11 234689999888777788888888654
|
| >2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.9e-10 Score=95.30 Aligned_cols=167 Identities=18% Similarity=0.106 Sum_probs=93.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC--------CCCcccc--ccchhhcC------------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD--------GDIPHSA--IGTARRMQ------------ 85 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~--------~~~~~~~--~~~~~~~~------------ 85 (241)
+++|.|+||+||||++.+++.......+.+++|++ .++.... ....... .+......
T Consensus 32 l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s-~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 110 (251)
T 2zts_A 32 TVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT-LEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVGLPSEE 110 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE-SSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC------------
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeec-ccCCHHHHHHHHHHcCCChHHHHhcCcchhhhhHHHHhhcccch
Confidence 89999999999999999887643323356788887 3322100 0000000 00000000
Q ss_pred --CCCCcc----cHHHHHHHHHhcCCcEEEEcCCCCHHhH------------HHHHHHHhCCcEEEEeecCCChhh-hhc
Q 026207 86 --VPEPSL----QHKVMIEAVENHMPEVIIVDEIGTEAEA------------HACRSIAERGVMLIGTAHGEWLEN-IIK 146 (241)
Q Consensus 86 --~~~~~~----~~~~~~~~~l~~~p~vlilDE~~~~~d~------------~~~~~~~~~g~~vi~t~H~~~~~~-~~~ 146 (241)
...... ........+...+|+++++|.++..... .....+++.|++++.+.|...... .+.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~ 190 (251)
T 2zts_A 111 KFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLS 190 (251)
T ss_dssp -------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSS
T ss_pred hccccccccHHHHHHHHHHHHHhcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccc
Confidence 000011 1223334555679999999997654322 112256677999999999875222 233
Q ss_pred CC-ccccccccccEEEe---CChHHHHHHHHHhhhccCCCCC-ceEEEEEEcCceEE
Q 026207 147 NP-ILSDLIGGVDTVTL---GDEEARARRCQKSILERKAPPT-FYFLIEMRERHYWV 198 (241)
Q Consensus 147 ~p-~l~~l~~~~d~V~~---~~~~~~~~~~~~~~k~r~g~~~-~~~~fe~~~~g~~~ 198 (241)
.+ ..+++ +|.|+. .+......|.++..|+|.++.. -...|++++.|+.+
T Consensus 191 ~~~~~~~~---aD~vi~l~~~~~~~~~~R~l~I~K~R~~~~~~~~~~f~It~~Gi~v 244 (251)
T 2zts_A 191 RYGIEEFI---ARGVIVLDLQEKNIELKRYVLIRKMRETRHSMKKYPFEIGPNGIVV 244 (251)
T ss_dssp SSSCGGGG---CSEEEEEEEEECSSSEEEEEEEEEETTCCCCCBEEEEEEETTEEEE
T ss_pred cCCceeEE---eeEEEEEEEEecCCeEEEEEEEEEcCCCCCCCEEEEEEEeCCcEEE
Confidence 34 45667 888876 1111111256777899977643 44569999999844
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.02 E-value=1.2e-09 Score=95.90 Aligned_cols=64 Identities=17% Similarity=0.105 Sum_probs=46.4
Q ss_pred CCCcccH------HHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccc
Q 026207 87 PEPSLQH------KVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDL 153 (241)
Q Consensus 87 ~~~~~~~------~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l 153 (241)
+|+|+++ +.+++.++..+|+++++|||++++|+.... .....|.++++++|... +.++
T Consensus 249 lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~---------~~~~ 319 (339)
T 3qkt_A 249 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE---------LKDA 319 (339)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG---------GGGG
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH---------HHHh
Confidence 4556666 456667777899999999999999995432 23445789999999843 4455
Q ss_pred cccccEEEe
Q 026207 154 IGGVDTVTL 162 (241)
Q Consensus 154 ~~~~d~V~~ 162 (241)
||+++.
T Consensus 320 ---~d~~~~ 325 (339)
T 3qkt_A 320 ---ADHVIR 325 (339)
T ss_dssp ---CSEEEE
T ss_pred ---CCEEEE
Confidence 787775
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=6.2e-10 Score=92.21 Aligned_cols=131 Identities=15% Similarity=0.084 Sum_probs=74.7
Q ss_pred cceeeccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCC---cccHHHHH
Q 026207 21 INKIIFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEP---SLQHKVMI 97 (241)
Q Consensus 21 ~~~~~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 97 (241)
.......+++++||+|+||||++..++...... |.+++++....+..+...+. .+++.... -.....++
T Consensus 7 ~~~~~G~i~litG~mGsGKTT~ll~~~~r~~~~-g~kVli~~~~~d~r~~~~i~-------srlG~~~~~~~~~~~~~i~ 78 (223)
T 2b8t_A 7 FSKKIGWIEFITGPMFAGKTAELIRRLHRLEYA-DVKYLVFKPKIDTRSIRNIQ-------SRTGTSLPSVEVESAPEIL 78 (223)
T ss_dssp ----CCEEEEEECSTTSCHHHHHHHHHHHHHHT-TCCEEEEEECCCGGGCSSCC-------CCCCCSSCCEEESSTHHHH
T ss_pred hccCCcEEEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEEEEeccCchHHHHHH-------HhcCCCccccccCCHHHHH
Confidence 334456799999999999999999999887655 67888874221111111111 11111000 11223344
Q ss_pred HHHHh----cCCcEEEEcCCCCHHh--HHHHHHHHhCCcEEEEeecCCChhhhhcC--CccccccccccEEEe
Q 026207 98 EAVEN----HMPEVIIVDEIGTEAE--AHACRSIAERGVMLIGTAHGEWLENIIKN--PILSDLIGGVDTVTL 162 (241)
Q Consensus 98 ~~~l~----~~p~vlilDE~~~~~d--~~~~~~~~~~g~~vi~t~H~~~~~~~~~~--p~l~~l~~~~d~V~~ 162 (241)
+.+.. .+|++|+|||++.... .+.+....+.|+.++.+.|..+..+..-. +.+..+ +|.|.-
T Consensus 79 ~~i~~~~~~~~~dvViIDEaQ~l~~~~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~l---AD~V~e 148 (223)
T 2b8t_A 79 NYIMSNSFNDETKVIGIDEVQFFDDRICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTY---ADKITK 148 (223)
T ss_dssp HHHHSTTSCTTCCEEEECSGGGSCTHHHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHH---CSEEEE
T ss_pred HHHHHHhhCCCCCEEEEecCccCcHHHHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHH---hheEee
Confidence 44433 3589999999986421 23445555679999999997774433111 134444 777763
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.97 E-value=2.6e-10 Score=104.10 Aligned_cols=113 Identities=12% Similarity=0.034 Sum_probs=71.1
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccc---------------cccc-----------
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHS---------------AIGT----------- 80 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~---------------~~~~----------- 80 (241)
.+++|+||||||||||++.|++...+..|.+.++++.... ..-..+++. ..+.
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~-~~i~~vpq~~~l~~~~~~~tv~eni~~~~~~~~~~~~~~ 217 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQ-QPIFTVPGCISATPISDILDAQLPTWGQSLTSGATLLHN 217 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTT-SCSSSCSSCCEEEECCSCCCTTCTTCSCBCBSSCCSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCcc-CCeeeeccchhhcccccccchhhhhcccccccCcchHHH
Confidence 4899999999999999999999998775513133331000 000000000 0000
Q ss_pred ----hhhc--------CCCCCcccHHHHHHHH--HhcCCcE----EEEcC-CCCHHhHH--HHHH-HHhCCcEEEEeecC
Q 026207 81 ----ARRM--------QVPEPSLQHKVMIEAV--ENHMPEV----IIVDE-IGTEAEAH--ACRS-IAERGVMLIGTAHG 138 (241)
Q Consensus 81 ----~~~~--------~~~~~~~~~~~~~~~~--l~~~p~v----lilDE-~~~~~d~~--~~~~-~~~~g~~vi~t~H~ 138 (241)
...+ ..++++++++..++++ +..+|++ +|+|| |++.+|+. .+.. ....+.++++++|.
T Consensus 218 ~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~~~~l~~l~~~~~~tviiVth~ 297 (460)
T 2npi_A 218 KQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDENLAELHHIIEKLNVNIMLVLCS 297 (460)
T ss_dssp BCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSSCHHHHHHHHHTTCCEEEEECC
T ss_pred HHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChhHHHHHHHHHHhCCCEEEEEcc
Confidence 0000 1123356899999999 9999999 99999 99988763 2222 23447888888898
Q ss_pred CC
Q 026207 139 EW 140 (241)
Q Consensus 139 ~~ 140 (241)
.+
T Consensus 298 ~~ 299 (460)
T 2npi_A 298 ET 299 (460)
T ss_dssp SS
T ss_pred Cc
Confidence 65
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=98.95 E-value=9.1e-10 Score=107.55 Aligned_cols=65 Identities=14% Similarity=0.134 Sum_probs=51.0
Q ss_pred CCCCcccHHHHHHHHHhcCC---cEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccc
Q 026207 86 VPEPSLQHKVMIEAVENHMP---EVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIG 155 (241)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~p---~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~ 155 (241)
.+|+|++|+..++.++..+| +++|+|||++++|+.... ...+.|.+||+++|..+ .+ ..
T Consensus 845 ~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~--------~i-~~-- 913 (972)
T 2r6f_A 845 TLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD--------VI-KT-- 913 (972)
T ss_dssp GCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--------HH-TT--
T ss_pred hCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH--------HH-Hh--
Confidence 35667899999999999764 999999999999985432 34457999999999875 22 24
Q ss_pred cccEEEe
Q 026207 156 GVDTVTL 162 (241)
Q Consensus 156 ~~d~V~~ 162 (241)
||+|+.
T Consensus 914 -aDrIiv 919 (972)
T 2r6f_A 914 -ADYIID 919 (972)
T ss_dssp -CSEEEE
T ss_pred -CCEEEE
Confidence 788776
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.94 E-value=3.8e-09 Score=103.31 Aligned_cols=66 Identities=14% Similarity=0.151 Sum_probs=51.5
Q ss_pred CCCCCcccHHHHHHHHHhcCC---cEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCcccccc
Q 026207 85 QVPEPSLQHKVMIEAVENHMP---EVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLI 154 (241)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~p---~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~ 154 (241)
..+|+|++|+..+++++..+| +++|+|||++++|+.... ...+.|.++|+++|..+ .+. .
T Consensus 804 ~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~--------~i~-~- 873 (916)
T 3pih_A 804 TTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD--------VIK-N- 873 (916)
T ss_dssp TTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--------HHT-T-
T ss_pred cCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--------HHH-h-
Confidence 346778999999999998765 799999999999984432 34557999999999885 222 2
Q ss_pred ccccEEEe
Q 026207 155 GGVDTVTL 162 (241)
Q Consensus 155 ~~~d~V~~ 162 (241)
||+|+.
T Consensus 874 --ADrIiv 879 (916)
T 3pih_A 874 --ADHIID 879 (916)
T ss_dssp --CSEEEE
T ss_pred --CCEEEE
Confidence 788876
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=98.93 E-value=6.5e-09 Score=91.34 Aligned_cols=158 Identities=16% Similarity=0.110 Sum_probs=91.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccc-c----CCCeEEEEcCCcccCCCCCCccccccchhhcCC-----------C--CC
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSD-E----FQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQV-----------P--EP 89 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~-~----~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~-----------~--~~ 89 (241)
+++|+||||+|||||+..++..... . .+.+++|++ .++... +.....++.++.. . ..
T Consensus 124 i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~-~E~~~~----~~~l~~~~~~~g~~~~~~l~~l~~~~~~~ 198 (343)
T 1v5w_A 124 ITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID-TENTFR----PDRLRDIADRFNVDHDAVLDNVLYARAYT 198 (343)
T ss_dssp EEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEE-SSSCCC----HHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEE-CCCCCC----HHHHHHHHHHcCCCHHHHHhceeEeecCC
Confidence 7999999999999999999986422 1 256899998 333211 1100000111111 0 01
Q ss_pred cccHHHH----HHHHHh--cCCcEEEEcCCCCHHhHH----------H--H--------HHHHhCCcEEEEeecCCChhh
Q 026207 90 SLQHKVM----IEAVEN--HMPEVIIVDEIGTEAEAH----------A--C--------RSIAERGVMLIGTAHGEWLEN 143 (241)
Q Consensus 90 ~~~~~~~----~~~~l~--~~p~vlilDE~~~~~d~~----------~--~--------~~~~~~g~~vi~t~H~~~~~~ 143 (241)
...+..+ ...+.. .++++||||+++...... . . ..+.+.|+++|++.|..+-.+
T Consensus 199 ~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~~~~~ 278 (343)
T 1v5w_A 199 SEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPG 278 (343)
T ss_dssp TTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC-----
T ss_pred HHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeeceecCC
Confidence 1111111 223333 679999999998765331 0 1 134567999999999875322
Q ss_pred h---h----cCC----ccccccccccEEEe---CChHHHHHHHHHhhhccCCCCCceEEEEEEcCceE
Q 026207 144 I---I----KNP----ILSDLIGGVDTVTL---GDEEARARRCQKSILERKAPPTFYFLIEMRERHYW 197 (241)
Q Consensus 144 ~---~----~~p----~l~~l~~~~d~V~~---~~~~~~~~~~~~~~k~r~g~~~~~~~fe~~~~g~~ 197 (241)
. + ..| .+++. +|.+++ .++. .+.++..|++.++... ..|++++.|+.
T Consensus 279 ~~~~~~g~~~~~~gg~~i~~~---ad~~l~l~r~~~~---~r~~~v~K~r~~p~~~-~~f~I~~~Gi~ 339 (343)
T 1v5w_A 279 ATMTFQADPKKPIGGHILAHA---STTRISLRKGRGE---LRIAKIYDSPEMPENE-ATFAITAGGIG 339 (343)
T ss_dssp --------------CCTTTTS---SSEEEEEEESSTT---EEEEEEEECTTCCSSC-EEEEEETTEEE
T ss_pred CccccCCCCCcCCchHHHHHh---CCEEEEEEEcCCC---EEEEEEEECCCCCCee-EEEEEeCCCcc
Confidence 1 2 112 35566 888887 3322 2567778899886554 58999998874
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.92 E-value=7.5e-09 Score=90.03 Aligned_cols=54 Identities=9% Similarity=0.078 Sum_probs=41.3
Q ss_pred CCCcccHHHHHHHHHh----cCCcEEEEcCCCCHHhHHHHH------HHHhCCcEEEEeecCCC
Q 026207 87 PEPSLQHKVMIEAVEN----HMPEVIIVDEIGTEAEAHACR------SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~----~~p~vlilDE~~~~~d~~~~~------~~~~~g~~vi~t~H~~~ 140 (241)
+|.+++++..++.++. .+|+++++|||++.+|+.... .....|.++|+++|...
T Consensus 220 lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~ 283 (322)
T 1e69_A 220 LSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKI 283 (322)
T ss_dssp SCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTT
T ss_pred CCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHH
Confidence 4556788899998886 578999999999999995432 11234788999999854
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=7.2e-11 Score=106.27 Aligned_cols=115 Identities=11% Similarity=0.019 Sum_probs=68.3
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCC------eE---EEEcCCcccCC-----C-CC-Ccccccc-chh------
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQK------RV---VIVDTSNEIGG-----D-GD-IPHSAIG-TAR------ 82 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------~v---~~i~~~~e~~~-----~-~~-~~~~~~~-~~~------ 82 (241)
.+++.|+||||||||||+++|++...++.|. .+ .++.+...... . +. ....... ...
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~ 148 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYE 148 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCc
Confidence 3489999999999999999999988766332 10 11111110000 0 00 0000000 000
Q ss_pred --hcCCCCCc--ccHHHHHHHHHhc----------CCcEEEEcCCCCHHhHH-------HHHHH-----HhC----CcEE
Q 026207 83 --RMQVPEPS--LQHKVMIEAVENH----------MPEVIIVDEIGTEAEAH-------ACRSI-----AER----GVML 132 (241)
Q Consensus 83 --~~~~~~~~--~~~~~~~~~~l~~----------~p~vlilDE~~~~~d~~-------~~~~~-----~~~----g~~v 132 (241)
.....+.+ ++++..++.++.+ +|+++++|||++++|+. .+... .+. ..++
T Consensus 149 ~~~~~~lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~ii 228 (413)
T 1tq4_A 149 YDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIF 228 (413)
T ss_dssp CSEEEEEESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEE
T ss_pred cCCeEEeCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEE
Confidence 01113445 8899999999988 99999999999998872 11222 122 2568
Q ss_pred EEeecCCC
Q 026207 133 IGTAHGEW 140 (241)
Q Consensus 133 i~t~H~~~ 140 (241)
++++|..+
T Consensus 229 liSsh~l~ 236 (413)
T 1tq4_A 229 LLSNKNVC 236 (413)
T ss_dssp ECCTTCTT
T ss_pred EEecCcCC
Confidence 88999776
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.92 E-value=7.6e-10 Score=97.61 Aligned_cols=157 Identities=13% Similarity=0.108 Sum_probs=89.3
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCC------CcccHHHH---H
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPE------PSLQHKVM---I 97 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~---~ 97 (241)
.+++|.||||+|||||+.+++...... +.+++|++ .++.... . ++.++.... .....+.. +
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~~~~~~-g~~vlyi~-~E~~~~~------~--~a~~lG~~~~~l~i~~~~~~e~~l~~~ 131 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVANAQAA-GGIAAFID-AEHALDP------E--YAKKLGVDTDSLLVSQPDTGEQALEIA 131 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEEE-SSCCCCH------H--HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEE-CCCCcCH------H--HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 389999999999999999999877654 57899998 3332110 0 011111110 00112222 2
Q ss_pred H-HHHhcCCcEEEEcCCCCHH----------hH----H--H----HH----HHHhCCcEEEEeecCCChhhh-hcCC---
Q 026207 98 E-AVENHMPEVIIVDEIGTEA----------EA----H--A----CR----SIAERGVMLIGTAHGEWLENI-IKNP--- 148 (241)
Q Consensus 98 ~-~~l~~~p~vlilDE~~~~~----------d~----~--~----~~----~~~~~g~~vi~t~H~~~~~~~-~~~p--- 148 (241)
. .+...+|+++|+||++... |. . . +. .+++.|+++|++.|...-.+. +.+|
T Consensus 132 ~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~ 211 (349)
T 2zr9_A 132 DMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETT 211 (349)
T ss_dssp HHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CC
T ss_pred HHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCccc
Confidence 2 2224579999999998764 11 1 1 11 235679999999998752222 1122
Q ss_pred ----ccccccccccEEEe---CC----hHH--HHHHHHHhhhccCCCCCceEEEEEE-cCce
Q 026207 149 ----ILSDLIGGVDTVTL---GD----EEA--RARRCQKSILERKAPPTFYFLIEMR-ERHY 196 (241)
Q Consensus 149 ----~l~~l~~~~d~V~~---~~----~~~--~~~~~~~~~k~r~g~~~~~~~fe~~-~~g~ 196 (241)
.+++. ||.++. ++ +.. ...+.++..|++.+|+.-...|++. +.|+
T Consensus 212 ~gg~~l~~~---ad~~l~lrr~~~~k~g~~~~g~~~~~~i~K~~~~p~~~~~~fdi~~~~Gi 270 (349)
T 2zr9_A 212 TGGKALKFY---ASVRLDVRRIETLKDGTDAVGNRTRVKVVKNKVSPPFKQAEFDILYGQGI 270 (349)
T ss_dssp SSHHHHHHH---CSEEEEEEEEEEECSSSSCCEEEEEEEEEEESSSCCCCEEEEEEETTSCB
T ss_pred CCchHhhhc---cceEEEEEEeeeeecCccccCCEEEEEeCCCccCCCCceEEEEEEeCCCc
Confidence 24555 776665 21 110 0114566778998887777778874 6666
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=4e-09 Score=91.88 Aligned_cols=157 Identities=13% Similarity=0.094 Sum_probs=85.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcccc-----CCCeEEEEcCCcccCCCCCCccccccchhhcCC-----------CC--C
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDE-----FQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQV-----------PE--P 89 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~-----~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~-----------~~--~ 89 (241)
+++|+||||+|||||+.+++...... .+.+++|++ .++... +.....++.++.. .. .
T Consensus 109 i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~-~e~~~~----~~~l~~~~~~~g~~~~~~~~~l~~~~~~~ 183 (324)
T 2z43_A 109 MTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYID-TEGTFR----WERIENMAKALGLDIDNVMNNIYYIRAIN 183 (324)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE-SSSCCC----HHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred EEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEE-CCCCCC----HHHHHHHHHHhCCCHHHHhccEEEEeCCC
Confidence 89999999999999999999875321 146899998 333210 0100000111111 00 0
Q ss_pred cccHH----HHHHHHHh-cCCcEEEEcCCCCHHhHH------------HH--------HHHHhCCcEEEEeecCCChhhh
Q 026207 90 SLQHK----VMIEAVEN-HMPEVIIVDEIGTEAEAH------------AC--------RSIAERGVMLIGTAHGEWLENI 144 (241)
Q Consensus 90 ~~~~~----~~~~~~l~-~~p~vlilDE~~~~~d~~------------~~--------~~~~~~g~~vi~t~H~~~~~~~ 144 (241)
...+. .+.+.+.. .+|++||+|+++...... .+ ..+.+.|++++++.|..+-.+.
T Consensus 184 ~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~~~~~~ 263 (324)
T 2z43_A 184 TDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMARPDM 263 (324)
T ss_dssp HHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC------
T ss_pred HHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcceeecCCC
Confidence 11111 12223333 689999999998764320 01 1345569999999998753221
Q ss_pred -h---cCC----ccccccccccEEEe---CChHHHHHHHHHhhhccCCCCCceEEEEEEcCce
Q 026207 145 -I---KNP----ILSDLIGGVDTVTL---GDEEARARRCQKSILERKAPPTFYFLIEMRERHY 196 (241)
Q Consensus 145 -~---~~p----~l~~l~~~~d~V~~---~~~~~~~~~~~~~~k~r~g~~~~~~~fe~~~~g~ 196 (241)
. ..| .+++. +|.++. .++. .+.++..|+++++... ..|++++.|+
T Consensus 264 ~~~~~~~~~gg~~l~~~---~d~~l~l~r~~~~---~r~~~v~k~~~~p~~~-~~f~I~~~Gi 319 (324)
T 2z43_A 264 FYGDPTVAVGGHTLYHV---PGIRIQLKKSRGN---RRIARVVDAPHLPEGE-VVFALTEEGI 319 (324)
T ss_dssp ---------------------CEEEEEEECSTT---EEEEEEEECSSSCCEE-EEEEEETTEE
T ss_pred cCCCCCCCCchHHHHhh---CcEEEEEEEcCCC---eEEEEEEECCCCCceE-EEEEEeCCCc
Confidence 1 122 34555 888887 2221 2567778899886553 5899999887
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=2.9e-09 Score=98.66 Aligned_cols=129 Identities=13% Similarity=0.014 Sum_probs=71.3
Q ss_pred EEEEEeCCCchHHHHHHH--HHHhccccCCCeEEEEcCCcccCC-------C-CCCccccccc--hhhcCC---------
Q 026207 28 FFLSYFRPGVGKTTVMRE--IARVLSDEFQKRVVIVDTSNEIGG-------D-GDIPHSAIGT--ARRMQV--------- 86 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~--l~~~l~~~~g~~v~~i~~~~e~~~-------~-~~~~~~~~~~--~~~~~~--------- 86 (241)
+++|+||||||||||+++ +++..+++ ...++++ +.+... . +..++..... ......
T Consensus 41 ~~~l~G~nGsGKSTL~~~~ll~Gl~~~~--~g~i~v~-g~~~~~~~~~~~~~~g~~~q~~~~~~~l~~~~~~~~~~~~~~ 117 (525)
T 1tf7_A 41 STLVSGTSGTGKTLFSIQFLYNGIIEFD--EPGVFVT-FEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQEV 117 (525)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHHC--CCEEEEE-SSSCHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCCSSCCSC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHhCC--CCEEEEE-EeCCHHHHHHHHHHcCCChHHhhccCcEEEEecCcccchhhh
Confidence 899999999999999999 67888765 3457776 433210 0 1111111000 000000
Q ss_pred CCC-cc--cHHHHHHHHHhcCCcEEEEcCCCCHH-----hHHH-------HHHHHhCCcEEEEeecCCChhhhhcCCc-c
Q 026207 87 PEP-SL--QHKVMIEAVENHMPEVIIVDEIGTEA-----EAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPI-L 150 (241)
Q Consensus 87 ~~~-~~--~~~~~~~~~l~~~p~vlilDE~~~~~-----d~~~-------~~~~~~~g~~vi~t~H~~~~~~~~~~p~-l 150 (241)
... +. ........+-..+|++++||||++.. |+.. +...++.|+++|+++|..+......... .
T Consensus 118 l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~ 197 (525)
T 1tf7_A 118 VGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVE 197 (525)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCH
T ss_pred hcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccce
Confidence 000 00 11122233335789999999998743 4422 2244557999999999986211000001 2
Q ss_pred ccccccccEEEe
Q 026207 151 SDLIGGVDTVTL 162 (241)
Q Consensus 151 ~~l~~~~d~V~~ 162 (241)
+.+ ||+|++
T Consensus 198 ~~l---aD~vi~ 206 (525)
T 1tf7_A 198 EFV---SDNVVI 206 (525)
T ss_dssp HHH---CSEEEE
T ss_pred eee---eeEEEE
Confidence 455 899887
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=3.5e-09 Score=103.93 Aligned_cols=106 Identities=17% Similarity=0.134 Sum_probs=58.8
Q ss_pred cEEEEEeCCCchHHHHHHHH--------HHhccccCCCeEEEEcCCcccCCCCCCccccccchhh-cCCCCCcccHHHHH
Q 026207 27 DFFLSYFRPGVGKTTVMREI--------ARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARR-MQVPEPSLQHKVMI 97 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l--------~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 97 (241)
.+++|+||||+||||+++++ .|...|..+ ..+..-..+.. .++.... ....+..+.....+
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~---~~~~~~d~i~~-------~ig~~d~l~~~lStf~~e~~~~ 732 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCES---AEVSIVDCILA-------RVGAGDSQLKGVSTFMAEMLET 732 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEE---EEEECCSEEEE-------ECC---------CHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccc---ccchHHHHHHH-------hcCchhhHHHhHhhhHHHHHHH
Confidence 38999999999999999999 332222210 11110001100 0000000 01122223333444
Q ss_pred HHHH--hcCCcEEEEcCCCCHHhHHHH--------HHHHh-CCcEEEEeecCCChh
Q 026207 98 EAVE--NHMPEVIIVDEIGTEAEAHAC--------RSIAE-RGVMLIGTAHGEWLE 142 (241)
Q Consensus 98 ~~~l--~~~p~vlilDE~~~~~d~~~~--------~~~~~-~g~~vi~t~H~~~~~ 142 (241)
+.++ ..+|+++|+|||+++.|+... ....+ .|+++++++|...+.
T Consensus 733 a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~ 788 (934)
T 3thx_A 733 ASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELT 788 (934)
T ss_dssp HHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGG
T ss_pred HHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHH
Confidence 4444 689999999999999887321 12333 489999999987643
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=1.5e-09 Score=104.50 Aligned_cols=106 Identities=14% Similarity=0.091 Sum_probs=64.1
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhcc-ccCCCeEEEEcCCcccCCCCCCccccccchhhcCC-------CCCcccHHHHH
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLS-DEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQV-------PEPSLQHKVMI 97 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~-~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~ 97 (241)
..+++|+||||+||||+++++++... ++.|.- +. . +...-+.+.+ .. .++.. .+..+.....+
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~---vp-a-~~~~i~~v~~-i~---~~~~~~d~l~~g~S~~~~e~~~l 646 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIALLAQVGSF---VP-A-EEAHLPLFDG-IY---TRIGASDDLAGGKSTFMVEMEEV 646 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCC---BS-S-SEEEECCCSE-EE---EECCC------CCSHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhhhhcccCce---ee-h-hccceeeHHH-hh---ccCCHHHHHHhcccHHHHHHHHH
Confidence 45899999999999999999999763 333321 11 0 0000011111 00 11111 12223344455
Q ss_pred HHHH--hcCCcEEEEcCC---CCHHhHHHHH-----HHHhCCcEEEEeecCCC
Q 026207 98 EAVE--NHMPEVIIVDEI---GTEAEAHACR-----SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 98 ~~~l--~~~p~vlilDE~---~~~~d~~~~~-----~~~~~g~~vi~t~H~~~ 140 (241)
+.++ ..+|+++++||| ++.+|..... ...+.|.++++++|...
T Consensus 647 a~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~~g~~vl~~TH~~~ 699 (765)
T 1ewq_A 647 ALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFE 699 (765)
T ss_dssp HHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHH
T ss_pred HHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 6666 779999999999 8888874331 23346899999999865
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=98.88 E-value=8.9e-10 Score=109.17 Aligned_cols=111 Identities=16% Similarity=0.144 Sum_probs=61.6
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEE-EEcCCc-ccCCCCCCccccccchhhc----CCCCCcccHHHHHHHH
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVV-IVDTSN-EIGGDGDIPHSAIGTARRM----QVPEPSLQHKVMIEAV 100 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~-~i~~~~-e~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 100 (241)
.+++|+||||+||||+++++ +.+..-. ++. ++.... .+.....+ ...++....+ ..++.+ ..+..+..+
T Consensus 790 ~i~~ItGpNgsGKSTlLr~i-Gl~~~~a--qiG~~Vpq~~~~l~v~d~I-~~rig~~d~~~~~~stf~~e-m~~~a~al~ 864 (1022)
T 2o8b_B 790 YCVLVTGPNMGGKSTLMRQA-GLLAVMA--QMGCYVPAEVCRLTPIDRV-FTRLGASDRIMSGESTFFVE-LSETASILM 864 (1022)
T ss_dssp CEEEEECCTTSSHHHHHHHH-HHHHHHH--TTTCCEESSEEEECCCSBE-EEECC---------CHHHHH-HHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHH-HHHHHHh--heeEEeccCcCCCCHHHHH-HHHcCCHHHHhhchhhhHHH-HHHHHHHHH
Confidence 58999999999999999999 7664320 111 222111 11000000 0000000000 000111 223455666
Q ss_pred HhcCCcEEEEcCCCCHHhHHH--------HHHHHhC-CcEEEEeecCCChh
Q 026207 101 ENHMPEVIIVDEIGTEAEAHA--------CRSIAER-GVMLIGTAHGEWLE 142 (241)
Q Consensus 101 l~~~p~vlilDE~~~~~d~~~--------~~~~~~~-g~~vi~t~H~~~~~ 142 (241)
+..+|+++++|||+++.|+.. +....+. |+++|+++|.....
T Consensus 865 la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~ 915 (1022)
T 2o8b_B 865 HATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLV 915 (1022)
T ss_dssp HCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHH
T ss_pred hCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH
Confidence 778999999999998877632 1133344 89999999987633
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.7e-09 Score=93.45 Aligned_cols=111 Identities=14% Similarity=0.167 Sum_probs=68.1
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCc-cc---------C---CCCCCcccc------------ccch
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN-EI---------G---GDGDIPHSA------------IGTA 81 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~-e~---------~---~~~~~~~~~------------~~~~ 81 (241)
.+++|+|||||||||+++.+++.+.+. +.+|.+..... .. . .-..+++.. +..+
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~l~~~-~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l~~~ 179 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRG 179 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHc-CCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHHHHH
Confidence 389999999999999999999999877 34555543111 00 0 001111100 0000
Q ss_pred hh----cCCCC-Ccc------------cHHHHHHHHHhcCCc--EEEEcCCCCHHhHHHHHH-HH-hCCcEEEEeecCC
Q 026207 82 RR----MQVPE-PSL------------QHKVMIEAVENHMPE--VIIVDEIGTEAEAHACRS-IA-ERGVMLIGTAHGE 139 (241)
Q Consensus 82 ~~----~~~~~-~~~------------~~~~~~~~~l~~~p~--vlilDE~~~~~d~~~~~~-~~-~~g~~vi~t~H~~ 139 (241)
.. ....+ .+. +++..+++++..+|+ ++++| |++++|+..... .. ..|.++++.+|..
T Consensus 180 ~~~~~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~~~~~~~~g~t~iiiThlD 257 (302)
T 3b9q_A 180 KEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQAREFNEVVGITGLILTKLD 257 (302)
T ss_dssp HHTTCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHHHHHHHHTCCCEEEEECCS
T ss_pred HHcCCcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHHHHHHHhcCCCEEEEeCCC
Confidence 00 00000 010 466777778888999 99999 999999865443 22 4588888888954
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=98.86 E-value=1.3e-09 Score=106.68 Aligned_cols=112 Identities=12% Similarity=0.057 Sum_probs=59.4
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcccc-CCC----eEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHH
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDE-FQK----RVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVE 101 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~-~g~----~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 101 (241)
.+++|+|||||||||++++++...-.. .|. .-..+..-..+...-. ....+ ......++.++++...+..+
T Consensus 674 ~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig-~~d~l--~~~~stfs~em~~~~~il~~- 749 (918)
T 3thx_B 674 RVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMG-AADNI--YKGRSTFMEELTDTAEIIRK- 749 (918)
T ss_dssp CEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC-------------CCHHHHHHHHHHHHHH-
T ss_pred eEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHHHHHHhCC-hHHHH--HHhHHHhhHHHHHHHHHHHh-
Confidence 389999999999999999987542111 010 0011110000000000 00000 00011112233444333333
Q ss_pred hcCCcEEEEcCCCCHHhHHHH-------H-HH-HhCCcEEEEeecCCChh
Q 026207 102 NHMPEVIIVDEIGTEAEAHAC-------R-SI-AERGVMLIGTAHGEWLE 142 (241)
Q Consensus 102 ~~~p~vlilDE~~~~~d~~~~-------~-~~-~~~g~~vi~t~H~~~~~ 142 (241)
..+|+++++|||+++.|+... . .. .+.|+++++++|...+.
T Consensus 750 a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~ 799 (918)
T 3thx_B 750 ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVC 799 (918)
T ss_dssp CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHH
Confidence 679999999999999998422 1 22 23589999999987643
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=3.9e-09 Score=108.42 Aligned_cols=156 Identities=17% Similarity=0.152 Sum_probs=98.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCC------CCcccHHHHHHHHH
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVP------EPSLQHKVMIEAVE 101 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l 101 (241)
+++|.||||+|||||+.+++...... +.+++|++ .++.... .. +.+..+. ......+.+++.+.
T Consensus 734 lVlI~G~PG~GKTtLal~lA~~aa~~-g~~VlyiS-~Ees~~q------l~--A~~lGvd~~~L~i~~~~~leei~~~l~ 803 (1706)
T 3cmw_A 734 IVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFID-AEHALDP------IY--ARKLGVDIDNLLCSQPDTGEQALEICD 803 (1706)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEC-TTSCCCH------HH--HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred eEEEECCCCCCcHHHHHHHHHHHHHc-CCCeEEEe-ccchHHH------HH--HHHcCCChhheEEecCCcHHHHHHHHH
Confidence 89999999999999999999988755 56899998 5554211 11 1222211 01113333333332
Q ss_pred ----hcCCcEEEEcCCCCHHh----------------HHH----HH----HHHhCCcEEEEeecCCChhhhhc-CC----
Q 026207 102 ----NHMPEVIIVDEIGTEAE----------------AHA----CR----SIAERGVMLIGTAHGEWLENIIK-NP---- 148 (241)
Q Consensus 102 ----~~~p~vlilDE~~~~~d----------------~~~----~~----~~~~~g~~vi~t~H~~~~~~~~~-~p---- 148 (241)
..+|+++|+|+++.... .+. +. .+++.|++++++.|.++..+... +|
T Consensus 804 ~lv~~~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~reis~~Lr~Lk~lAke~gi~VIlinql~r~~g~~~Gdp~~p~ 883 (1706)
T 3cmw_A 804 ALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTT 883 (1706)
T ss_dssp HHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCCEEES
T ss_pred HHHHccCCCEEEEechhhhccccccccccCccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCccccccCCccccC
Confidence 47899999999987541 111 11 35678999999999764323222 22
Q ss_pred ---ccccccccccEEEe---C------ChHHHHHHHHHhhhccCCCCCceEEEEE-EcCce
Q 026207 149 ---ILSDLIGGVDTVTL---G------DEEARARRCQKSILERKAPPTFYFLIEM-RERHY 196 (241)
Q Consensus 149 ---~l~~l~~~~d~V~~---~------~~~~~~~~~~~~~k~r~g~~~~~~~fe~-~~~g~ 196 (241)
.+++. +|.+++ . +......+.++..|||+|++.....|+| .+.|+
T Consensus 884 gs~~Leq~---ADvvl~L~R~~~~~~g~~~~g~~r~l~V~KnR~gp~~~~~~F~I~~~~Gi 941 (1706)
T 3cmw_A 884 GGNALKFY---ASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGI 941 (1706)
T ss_dssp SCSHHHHH---EEEEEEEEEEEEEEETTEEEEEEEEEEEEEESSSCSCCEEEEEEETTTEE
T ss_pred Ccchhhhe---eeEEEEEEecccccccccccCcEEEEEEEecCCCCCCceEEEEEEcCCCc
Confidence 34555 788776 1 1100001566778999999999999999 45565
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.83 E-value=3.4e-09 Score=93.71 Aligned_cols=111 Identities=14% Similarity=0.140 Sum_probs=68.7
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCc-cc------------CCCCCCcccc------------ccch
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN-EI------------GGDGDIPHSA------------IGTA 81 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~-e~------------~~~~~~~~~~------------~~~~ 81 (241)
.+++|+|||||||||+++.|++.+.+. +.+|.+..... .. ..-..+++.. +..+
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag~l~~~-~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~~~ 236 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRG 236 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHhhcccc-CCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHHHHH
Confidence 389999999999999999999999877 34555543111 00 0001111100 0000
Q ss_pred h--h--------cCCCCCc-------ccHHHHHHHHHhcCCc--EEEEcCCCCHHhHHHHHHH--HhCCcEEEEeecCC
Q 026207 82 R--R--------MQVPEPS-------LQHKVMIEAVENHMPE--VIIVDEIGTEAEAHACRSI--AERGVMLIGTAHGE 139 (241)
Q Consensus 82 ~--~--------~~~~~~~-------~~~~~~~~~~l~~~p~--vlilDE~~~~~d~~~~~~~--~~~g~~vi~t~H~~ 139 (241)
. . .+..... .+++..+++++..+|+ ++++| |++++|+...... ...|.++++.+|..
T Consensus 237 ~~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLD-pttglD~~~~~~~~~~~~g~t~iiiThlD 314 (359)
T 2og2_A 237 KEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQAREFNEVVGITGLILTKLD 314 (359)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHHHHHHHHTCCCEEEEESCT
T ss_pred HhCCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHHHHHHHhcCCeEEEEecCc
Confidence 0 0 0000000 0467788888889999 99999 9999998654432 23588988889954
|
| >3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=98.82 E-value=2.2e-08 Score=86.75 Aligned_cols=111 Identities=12% Similarity=0.047 Sum_probs=66.8
Q ss_pred eeccEEEEEeCCCchHHHHHHHHHHhcccc-CCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCc------ccHHHH
Q 026207 24 IIFDFFLSYFRPGVGKTTVMREIARVLSDE-FQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPS------LQHKVM 96 (241)
Q Consensus 24 ~~~g~vll~Gp~GsGKTTLl~~l~~~l~~~-~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 96 (241)
++.|+++|.||||+|||||+.+++...... .+.+++|++ .++.... .++.++.+.... ...+.+
T Consensus 26 l~~GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId-~E~s~~~--------~ra~~lGvd~d~llv~~~~~~E~~ 96 (333)
T 3io5_A 26 MQSGLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYD-SEFGITP--------AYLRSMGVDPERVIHTPVQSLEQL 96 (333)
T ss_dssp BCSEEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEE-SSCCCCH--------HHHHHTTCCGGGEEEEECSBHHHH
T ss_pred CcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe-ccchhhH--------HHHHHhCCCHHHeEEEcCCCHHHH
Confidence 445589999999999999998888776543 357999999 4443211 112333322111 122222
Q ss_pred ----HHH---HHhcCCcEEEEcCCCCHHh-H---------------H--H----H----HHHHhCCcEEEEeecCCChhh
Q 026207 97 ----IEA---VENHMPEVIIVDEIGTEAE-A---------------H--A----C----RSIAERGVMLIGTAHGEWLEN 143 (241)
Q Consensus 97 ----~~~---~l~~~p~vlilDE~~~~~d-~---------------~--~----~----~~~~~~g~~vi~t~H~~~~~~ 143 (241)
+.. +...+|+++|+|++++... + + . + ..+++.|+++|++-|..+ .+
T Consensus 97 ~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV~k-~G 175 (333)
T 3io5_A 97 RIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHTYE-TQ 175 (333)
T ss_dssp HHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC-----
T ss_pred HHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCeee-cC
Confidence 222 2346799999999987641 1 0 0 1 135678999999999988 55
Q ss_pred h
Q 026207 144 I 144 (241)
Q Consensus 144 ~ 144 (241)
.
T Consensus 176 ~ 176 (333)
T 3io5_A 176 E 176 (333)
T ss_dssp -
T ss_pred c
Confidence 4
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.77 E-value=7.7e-09 Score=94.13 Aligned_cols=35 Identities=29% Similarity=0.432 Sum_probs=31.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
+++|.|+||+|||||+..++....+..|.+|+|++
T Consensus 205 liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 205 LIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 89999999999999999999988764467889887
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=2.3e-08 Score=86.74 Aligned_cols=158 Identities=12% Similarity=0.136 Sum_probs=90.1
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhc--cc---------cCC----CeEEEEcCCcccCCCCCCccccccchhhcCC-----
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVL--SD---------EFQ----KRVVIVDTSNEIGGDGDIPHSAIGTARRMQV----- 86 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l--~~---------~~g----~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~----- 86 (241)
.+++|+||||+|||||+.+++... +. ..| .+++|++ .++... +.....++.++..
T Consensus 99 ~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~-~e~~~~----~~~l~~~~~~~g~~~~~~ 173 (322)
T 2i1q_A 99 SVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYID-TEGTFR----PERIMQMAEHAGIDGQTV 173 (322)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEE-SSSCCC----HHHHHHHHHHHTCCHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEE-CCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 389999999999999999999753 21 123 5899998 333210 1100001111111
Q ss_pred ------CC--CcccHHH----HHHHHHh-cCCcEEEEcCCCCHHhH----------H--HH--------HHHHhCCcEEE
Q 026207 87 ------PE--PSLQHKV----MIEAVEN-HMPEVIIVDEIGTEAEA----------H--AC--------RSIAERGVMLI 133 (241)
Q Consensus 87 ------~~--~~~~~~~----~~~~~l~-~~p~vlilDE~~~~~d~----------~--~~--------~~~~~~g~~vi 133 (241)
.. ....+.. +...+.. .++++||||+++..... . .+ ..+.+.|++++
T Consensus 174 ~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi 253 (322)
T 2i1q_A 174 LDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVL 253 (322)
T ss_dssp HHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred hcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence 00 0111111 2222333 57899999999866421 0 01 13456799999
Q ss_pred EeecCCChhhh-h---cCC----ccccccccccEEEe---CChHHHHHHHHHhhhccCCCCCceEEEEEEcCce
Q 026207 134 GTAHGEWLENI-I---KNP----ILSDLIGGVDTVTL---GDEEARARRCQKSILERKAPPTFYFLIEMRERHY 196 (241)
Q Consensus 134 ~t~H~~~~~~~-~---~~p----~l~~l~~~~d~V~~---~~~~~~~~~~~~~~k~r~g~~~~~~~fe~~~~g~ 196 (241)
++.|..+-.+. + ..| .+++. +|.++. .++. .|.++..|+++++... ..|++.+.|+
T Consensus 254 ~~nq~~~~~~~~~g~~~~~~g~~~~~~~---~d~~i~l~~~~~~---~r~~~v~k~~~~p~~~-~~f~I~~~Gi 320 (322)
T 2i1q_A 254 VTNQVSAKPDAFFGMAEQAIGGHIVGHA---ATFRFFVRKGKGD---KRVAKLYDSPHLPDAE-AIFRITEKGI 320 (322)
T ss_dssp EEECEECC-------CCEESSHHHHHHH---CSEEEEEEECSTT---EEEEEEEECSSSCCEE-EEEEEETTEE
T ss_pred EECceeecCCCCCCCCcCCCCcHHHHhc---CcEEEEEEecCCC---eEEEEEEECCCCCCeE-EEEEEeCCCc
Confidence 99997652221 1 012 24555 888887 3221 2567778899887654 4899998886
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=8.4e-10 Score=95.88 Aligned_cols=92 Identities=17% Similarity=0.157 Sum_probs=58.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCC-CeEEEEcCCcccCCC------C-----CCccc-c-------c-----cch-
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQ-KRVVIVDTSNEIGGD------G-----DIPHS-A-------I-----GTA- 81 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g-~~v~~i~~~~e~~~~------~-----~~~~~-~-------~-----~~~- 81 (241)
+++|.||||||||||++.|++.+.+..| .++.++.+...+... . ..+.. . + +..
T Consensus 92 ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~~~~~~ 171 (312)
T 3aez_A 92 IIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVTSVKSGSDY 171 (312)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHHHTTCSC
T ss_pred EEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHHHhCCCccc
Confidence 8999999999999999999999977544 456666532221110 0 00100 0 0 000
Q ss_pred hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhH
Q 026207 82 RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA 119 (241)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~ 119 (241)
.....+|.+++++..++.++..+|++||+|||...+|+
T Consensus 172 ~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 172 ACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp EEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred CCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 11223455667777677777889999999999888653
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.72 E-value=2.8e-09 Score=90.75 Aligned_cols=28 Identities=14% Similarity=0.217 Sum_probs=22.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCC
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQ 55 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g 55 (241)
.++|+||||||||||++.|++...+..|
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G 31 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKA 31 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC----
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence 4789999999999999999999887644
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=98.70 E-value=5.1e-08 Score=84.28 Aligned_cols=35 Identities=29% Similarity=0.370 Sum_probs=29.6
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
.+++|+|||||||||+++.+++.+.+. +.+|.+..
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lagll~~~-~g~V~l~g 137 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGRYYQNL-GKKVMFCA 137 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEEEC
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEEEe
Confidence 499999999999999999999999887 44555554
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=98.69 E-value=3.7e-08 Score=85.42 Aligned_cols=34 Identities=32% Similarity=0.431 Sum_probs=29.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
+++|.|+||+|||||+.+++...... +.+++|++
T Consensus 70 l~li~G~pG~GKTtl~l~ia~~~a~~-g~~vl~~s 103 (315)
T 3bh0_A 70 FVLIAARPSMGKTAFALKQAKNMSDN-DDVVNLHS 103 (315)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTT-TCEEEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHc-CCeEEEEE
Confidence 89999999999999999999776544 47899987
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.67 E-value=2.2e-08 Score=89.56 Aligned_cols=70 Identities=27% Similarity=0.361 Sum_probs=52.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCcE
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEV 107 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~v 107 (241)
-+||+||||||||++++++|+... ..++.+. ..++... .. .......+.++..+..+.|.+
T Consensus 184 GvLL~GPPGTGKTllAkAiA~e~~----~~f~~v~-~s~l~sk------~v--------Gese~~vr~lF~~Ar~~aP~I 244 (405)
T 4b4t_J 184 GVILYGPPGTGKTLLARAVAHHTD----CKFIRVS-GAELVQK------YI--------GEGSRMVRELFVMAREHAPSI 244 (405)
T ss_dssp CEEEESCSSSSHHHHHHHHHHHHT----CEEEEEE-GGGGSCS------ST--------THHHHHHHHHHHHHHHTCSEE
T ss_pred ceEEeCCCCCCHHHHHHHHHHhhC----CCceEEE-hHHhhcc------cc--------chHHHHHHHHHHHHHHhCCce
Confidence 489999999999999999999864 5677777 5554211 11 112345678889999999999
Q ss_pred EEEcCCCCH
Q 026207 108 IIVDEIGTE 116 (241)
Q Consensus 108 lilDE~~~~ 116 (241)
||+||+.+.
T Consensus 245 IFiDEiDai 253 (405)
T 4b4t_J 245 IFMDEIDSI 253 (405)
T ss_dssp EEEESSSCC
T ss_pred Eeeecchhh
Confidence 999998644
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=98.66 E-value=6.5e-09 Score=83.86 Aligned_cols=27 Identities=33% Similarity=0.433 Sum_probs=23.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCC
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQ 55 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g 55 (241)
.++|+||||||||||++.+++.+. +.|
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~-~~G 29 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK-SSG 29 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH-HTT
T ss_pred EEEEECCCCChHHHHHHHHHhhcc-cCC
Confidence 689999999999999999999986 433
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.64 E-value=5.9e-08 Score=88.80 Aligned_cols=68 Identities=19% Similarity=0.284 Sum_probs=49.6
Q ss_pred EEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCcEE
Q 026207 29 FLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVI 108 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~vl 108 (241)
++|+||||+||||+++++++... ..+++++ ..++... .. .....+.+..++.+....|.+|
T Consensus 52 vLL~GppGtGKT~Laraia~~~~----~~f~~is-~~~~~~~------~~--------g~~~~~~r~lf~~A~~~~p~IL 112 (476)
T 2ce7_A 52 ILLVGPPGTGKTLLARAVAGEAN----VPFFHIS-GSDFVEL------FV--------GVGAARVRDLFAQAKAHAPCIV 112 (476)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT----CCEEEEE-GGGTTTC------CT--------THHHHHHHHHHHHHHHTCSEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHcC----CCeeeCC-HHHHHHH------Hh--------cccHHHHHHHHHHHHhcCCCEE
Confidence 88999999999999999999763 4566666 4433211 00 1123456778888888999999
Q ss_pred EEcCCCC
Q 026207 109 IVDEIGT 115 (241)
Q Consensus 109 ilDE~~~ 115 (241)
||||+..
T Consensus 113 fIDEid~ 119 (476)
T 2ce7_A 113 FIDEIDA 119 (476)
T ss_dssp EEETGGG
T ss_pred EEechhh
Confidence 9999944
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=2.5e-08 Score=96.53 Aligned_cols=107 Identities=18% Similarity=0.166 Sum_probs=55.5
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcccc-CCCeEEEEcCCc-ccCCCCCCcc--ccccchhhc----CCCCCcccHHHHHH
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDE-FQKRVVIVDTSN-EIGGDGDIPH--SAIGTARRM----QVPEPSLQHKVMIE 98 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~-~g~~v~~i~~~~-e~~~~~~~~~--~~~~~~~~~----~~~~~~~~~~~~~~ 98 (241)
.+++|+||||+||||+++++++..... .|. ++.... .+ +...+ ..++....+ ...+.++. +....
T Consensus 608 ~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~---~vpa~~~~i---~~~~~i~~~~~~~d~l~~~~stf~~e~~-~~~~i 680 (800)
T 1wb9_A 608 RMLIITGPNMGGKSTYMRQTALIALMAYIGS---YVPAQKVEI---GPIDRIFTRVGAADDLASGRSTFMVEMT-ETANI 680 (800)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHTTTC---CBSSSEEEE---CCCCEEEEEEC-----------CHHHHH-HHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHhcCc---ccchhcccc---eeHHHHHhhCCHHHHHHhhhhhhhHHHH-HHHHH
Confidence 489999999999999999999864321 121 111000 00 00000 000000000 00111111 11111
Q ss_pred HHHhcCCcEEEEcCCCCHHhH---HHH-----HHHHh-CCcEEEEeecCCC
Q 026207 99 AVENHMPEVIIVDEIGTEAEA---HAC-----RSIAE-RGVMLIGTAHGEW 140 (241)
Q Consensus 99 ~~l~~~p~vlilDE~~~~~d~---~~~-----~~~~~-~g~~vi~t~H~~~ 140 (241)
.....+|+++++|||+++.|+ ..+ ....+ .|.++++++|...
T Consensus 681 l~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~e 731 (800)
T 1wb9_A 681 LHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFE 731 (800)
T ss_dssp HHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGG
T ss_pred HHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHH
Confidence 223579999999999665444 222 13334 4899999999875
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=1.9e-08 Score=103.36 Aligned_cols=151 Identities=17% Similarity=0.134 Sum_probs=92.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCC---------CCcccHHHHH-
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVP---------EPSLQHKVMI- 97 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~- 97 (241)
+++|.||||+|||||+.+++...... |.+++|++ .++.... . ++.++.+. +...+....+
T Consensus 385 lilI~G~pGsGKTtLaLq~a~~~~~~-G~~vlyis-~E~s~~~------~--~a~~lGvd~~~L~i~~~~~~e~~l~~l~ 454 (1706)
T 3cmw_A 385 IVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFID-AEHALDP------I--YARKLGVDIDNLLCSQPDTGEQALEICD 454 (1706)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEC-TTSCCCH------H--HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEE-ccCchHH------H--HHHHcCCCHHHeEEcCCCCHHHHHHHHH
Confidence 89999999999999999999887655 67899998 4443211 0 01111111 1111222222
Q ss_pred HHHHhcCCcEEEEcCCCCHHh----------------HH----HHH----HHHhCCcEEEEeecCCChhhhh-------c
Q 026207 98 EAVENHMPEVIIVDEIGTEAE----------------AH----ACR----SIAERGVMLIGTAHGEWLENII-------K 146 (241)
Q Consensus 98 ~~~l~~~p~vlilDE~~~~~d----------------~~----~~~----~~~~~g~~vi~t~H~~~~~~~~-------~ 146 (241)
..+...+|+++|+|+++.... .+ .+. .+++.|+++|++.|.+...+.. .
T Consensus 455 ~lv~~~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~~~vg~~fg~~~~p~ 534 (1706)
T 3cmw_A 455 ALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTT 534 (1706)
T ss_dssp HHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCCEEES
T ss_pred HHHHhcCCCEEEECCHHHhhccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeecccccccccCCCccCC
Confidence 223357899999999986642 01 111 3467799999999976522211 1
Q ss_pred CC-ccccccccccEEEe---CC----h--HHHHHHHHHhhhccCCCCCceEEEEE
Q 026207 147 NP-ILSDLIGGVDTVTL---GD----E--EARARRCQKSILERKAPPTFYFLIEM 191 (241)
Q Consensus 147 ~p-~l~~l~~~~d~V~~---~~----~--~~~~~~~~~~~k~r~g~~~~~~~fe~ 191 (241)
++ .+++. +|.+++ .+ + ....++.++..|+|.+++.....|++
T Consensus 535 gg~ale~~---ADv~L~L~R~~~~~~g~~~~~~~~~l~V~KnR~gp~~~~~~F~I 586 (1706)
T 3cmw_A 535 GGNALKFY---ASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQI 586 (1706)
T ss_dssp SCSHHHHH---EEEEEEEEEEEEEEETTEEEEEEEEEEEEEESSSCSCCEEEEEE
T ss_pred CCcceeee---CCEEEEEEeccccccCccccCcEEEEEEEecCCCCCCCeEEEEE
Confidence 11 45666 888776 11 1 00112456778999999988889985
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.60 E-value=3.9e-08 Score=88.89 Aligned_cols=69 Identities=22% Similarity=0.262 Sum_probs=51.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCcE
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEV 107 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~v 107 (241)
-+||+||||||||++++++|+... ..++.++ ..++... .. .......+.++..+..+.|.+
T Consensus 217 GvLLyGPPGTGKTllAkAiA~e~~----~~f~~v~-~s~l~~~------~v--------Gese~~ir~lF~~A~~~aP~I 277 (434)
T 4b4t_M 217 GALMYGPPGTGKTLLARACAAQTN----ATFLKLA-APQLVQM------YI--------GEGAKLVRDAFALAKEKAPTI 277 (434)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHT----CEEEEEE-GGGGCSS------CS--------SHHHHHHHHHHHHHHHHCSEE
T ss_pred eeEEECcCCCCHHHHHHHHHHHhC----CCEEEEe-hhhhhhc------cc--------chHHHHHHHHHHHHHhcCCeE
Confidence 589999999999999999999864 5667777 5554211 11 112345677888889999999
Q ss_pred EEEcCCCC
Q 026207 108 IIVDEIGT 115 (241)
Q Consensus 108 lilDE~~~ 115 (241)
|++||+-+
T Consensus 278 ifiDEiDa 285 (434)
T 4b4t_M 278 IFIDELDA 285 (434)
T ss_dssp EEEECTHH
T ss_pred Eeecchhh
Confidence 99999743
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=98.60 E-value=3.4e-08 Score=87.26 Aligned_cols=163 Identities=15% Similarity=0.108 Sum_probs=87.5
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccc-hhhcCCCC--CcccHHHHHHH-HHh
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGT-ARRMQVPE--PSLQHKVMIEA-VEN 102 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~-~l~ 102 (241)
.+++|.||||+|||||+.+++...... +.+++|++ .++..... .....+. ...+.+.. ........+.. ...
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~~~~~~-g~~vlyid-~E~s~~~~--~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~ 139 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFID-AEHALDPI--YARKLGVDIDNLLCSQPDTGEQALEICDALARS 139 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEE-SSCCCCHH--HHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEe-CCCCccHH--HHHHcCCChhheeeeCCCCHHHHHHHHHHHHhc
Confidence 389999999999999999999877654 57899998 43321100 0000000 00011111 11122222222 235
Q ss_pred cCCcEEEEcCCCCHHh-H-------------H--H----HH----HHHhCCcEEEEeecCCChhhh-h---cCC----cc
Q 026207 103 HMPEVIIVDEIGTEAE-A-------------H--A----CR----SIAERGVMLIGTAHGEWLENI-I---KNP----IL 150 (241)
Q Consensus 103 ~~p~vlilDE~~~~~d-~-------------~--~----~~----~~~~~g~~vi~t~H~~~~~~~-~---~~p----~l 150 (241)
.++++||||+++.... . . . +. .+++.|+++|++.|...-.+. + ..| .+
T Consensus 140 ~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~~~~~~~fg~~~~~~gG~~l 219 (356)
T 1u94_A 140 GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNAL 219 (356)
T ss_dssp TCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC--------------CTTCSHH
T ss_pred cCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCCcce
Confidence 7899999999875431 0 0 1 11 245679999999998753221 1 112 24
Q ss_pred ccccccccEEEe---CC----hHH--HHHHHHHhhhccCCCCCceEEEEEE-cCce
Q 026207 151 SDLIGGVDTVTL---GD----EEA--RARRCQKSILERKAPPTFYFLIEMR-ERHY 196 (241)
Q Consensus 151 ~~l~~~~d~V~~---~~----~~~--~~~~~~~~~k~r~g~~~~~~~fe~~-~~g~ 196 (241)
++. +|.++. .+ +.. ...+.+...|++.+|+.-...|++. +.|+
T Consensus 220 ~~~---advrl~l~r~~~~k~g~~~~g~~~~~~i~K~r~~p~~~~~~f~i~~~~Gi 272 (356)
T 1u94_A 220 KFY---ASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGI 272 (356)
T ss_dssp HHH---CSEEEEEEEEEEEESSSSEEEEEEEEEEEEESSBCSCCEEEEEEETTTEE
T ss_pred eee---ccEEEEEEEeeeeccCccccCcEEEEEECCCccCCCCCcEEEEEEcCCCc
Confidence 445 666554 11 110 0114556678898888777778874 6666
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.59 E-value=4.8e-08 Score=88.35 Aligned_cols=69 Identities=25% Similarity=0.368 Sum_probs=51.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCcE
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEV 107 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~v 107 (241)
-+||+||||||||++++++|+.+. ..++.++ ..++... .. .......+..+..+..+.|.+
T Consensus 217 GvLL~GPPGtGKTllAkAiA~e~~----~~~~~v~-~s~l~sk------~~--------Gese~~ir~~F~~A~~~~P~I 277 (437)
T 4b4t_L 217 GVLLYGPPGTGKTLLAKAVAATIG----ANFIFSP-ASGIVDK------YI--------GESARIIREMFAYAKEHEPCI 277 (437)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHT----CEEEEEE-GGGTCCS------SS--------SHHHHHHHHHHHHHHHSCSEE
T ss_pred eEEEECCCCCcHHHHHHHHHHHhC----CCEEEEe-hhhhccc------cc--------hHHHHHHHHHHHHHHhcCCce
Confidence 589999999999999999999874 5667777 5544211 11 111345677888888999999
Q ss_pred EEEcCCCC
Q 026207 108 IIVDEIGT 115 (241)
Q Consensus 108 lilDE~~~ 115 (241)
||+||+-+
T Consensus 278 ifiDEiDa 285 (437)
T 4b4t_L 278 IFMDEVDA 285 (437)
T ss_dssp EEEECCCS
T ss_pred eeeecccc
Confidence 99999854
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.58 E-value=6.2e-08 Score=100.79 Aligned_cols=156 Identities=17% Similarity=0.136 Sum_probs=95.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCC------CcccHHHHHHHH-
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPE------PSLQHKVMIEAV- 100 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~- 100 (241)
+++|.||||+|||||+.+++...... |.+++|++ .++.... . ++.++.+.. .......+++.+
T Consensus 385 lilI~G~pGsGKTtLaLqia~~~a~~-G~~vlyis-~E~s~~~------~--~a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 385 IVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFID-AEHALDP------I--YARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEEC-TTSCCCH------H--HHHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEEEE-cCCCHHH------H--HHHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 89999999999999999999887654 67899998 5443211 0 011222110 011223333322
Q ss_pred ---HhcCCcEEEEcCCCCHHh----------------HH----HHH----HHHhCCcEEEEeecCCChhhhh-cC---C-
Q 026207 101 ---ENHMPEVIIVDEIGTEAE----------------AH----ACR----SIAERGVMLIGTAHGEWLENII-KN---P- 148 (241)
Q Consensus 101 ---l~~~p~vlilDE~~~~~d----------------~~----~~~----~~~~~g~~vi~t~H~~~~~~~~-~~---p- 148 (241)
...+|++||+|+++.... .+ .++ .+++.|+++|++.|.+...+.. .. |
T Consensus 455 ~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~~~vg~~~g~p~~ps 534 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTT 534 (2050)
T ss_dssp HHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCCSSCCEECS
T ss_pred HHHHhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeecccccccccCCCcCCC
Confidence 257899999999875531 11 111 2467899999999987532221 11 1
Q ss_pred ---ccccccccccEEEe---CC----hH--HHHHHHHHhhhccCCCCCceEEEEE-EcCce
Q 026207 149 ---ILSDLIGGVDTVTL---GD----EE--ARARRCQKSILERKAPPTFYFLIEM-RERHY 196 (241)
Q Consensus 149 ---~l~~l~~~~d~V~~---~~----~~--~~~~~~~~~~k~r~g~~~~~~~fe~-~~~g~ 196 (241)
.+++. +|.+++ .+ +. ...++.+...|||++++.....|++ ...|+
T Consensus 535 Gg~ale~~---ADv~l~L~R~~~~~~g~~~~g~~~~v~V~KnR~gp~g~~~~f~I~~~~Gi 592 (2050)
T 3cmu_A 535 GGNALKFY---ASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGI 592 (2050)
T ss_dssp SHHHHHHH---EEEEEEEEEEEEEEETTEEEEEEEEEEEEEESSSCSCCEEEEEEETTTEE
T ss_pred Ccchhhhh---CCEEEEEEecccccCCccccCcEEEEEEEecCCCCCCceEEEEEEeCCCc
Confidence 35666 788776 11 11 0011345678999999988889996 34454
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.1e-07 Score=81.12 Aligned_cols=73 Identities=19% Similarity=0.289 Sum_probs=51.1
Q ss_pred eccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcC
Q 026207 25 IFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHM 104 (241)
Q Consensus 25 ~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 104 (241)
+...++|+||||+||||+++++++... ..++.++ ..++... ...+.....+..+..+...+
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~----~~~~~i~-~~~l~~~--------------~~~~~~~~~~~~~~~~~~~~ 113 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECS----ATFLNIS-AASLTSK--------------YVGDGEKLVRALFAVARHMQ 113 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTT----CEEEEEE-STTTSSS--------------SCSCHHHHHHHHHHHHHHTC
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhC----CCeEEee-HHHHhhc--------------ccchHHHHHHHHHHHHHHcC
Confidence 345799999999999999999999863 4566666 3333111 00112344556677777889
Q ss_pred CcEEEEcCCCCH
Q 026207 105 PEVIIVDEIGTE 116 (241)
Q Consensus 105 p~vlilDE~~~~ 116 (241)
|.+|++||+...
T Consensus 114 ~~vl~iDEid~l 125 (297)
T 3b9p_A 114 PSIIFIDEVDSL 125 (297)
T ss_dssp SEEEEEETGGGT
T ss_pred CcEEEeccHHHh
Confidence 999999999654
|
| >4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.56 E-value=5.7e-08 Score=87.37 Aligned_cols=69 Identities=19% Similarity=0.324 Sum_probs=52.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCcE
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEV 107 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~v 107 (241)
-+||+||||||||++++++|+... ..++.++ ..++... .. .......+.++..+....|.+
T Consensus 218 GvLLyGPPGTGKTlLAkAiA~e~~----~~fi~v~-~s~l~sk------~v--------Gesek~ir~lF~~Ar~~aP~I 278 (437)
T 4b4t_I 218 GVILYGAPGTGKTLLAKAVANQTS----ATFLRIV-GSELIQK------YL--------GDGPRLCRQIFKVAGENAPSI 278 (437)
T ss_dssp EEEEESSTTTTHHHHHHHHHHHHT----CEEEEEE-SGGGCCS------SS--------SHHHHHHHHHHHHHHHTCSEE
T ss_pred CCceECCCCchHHHHHHHHHHHhC----CCEEEEE-HHHhhhc------cC--------chHHHHHHHHHHHHHhcCCcE
Confidence 599999999999999999999874 5667777 5555211 11 112345677888899999999
Q ss_pred EEEcCCCC
Q 026207 108 IIVDEIGT 115 (241)
Q Consensus 108 lilDE~~~ 115 (241)
|++||+.+
T Consensus 279 IfiDEiDa 286 (437)
T 4b4t_I 279 VFIDEIDA 286 (437)
T ss_dssp EEEEEESS
T ss_pred EEEehhhh
Confidence 99999754
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.55 E-value=7.7e-08 Score=81.86 Aligned_cols=74 Identities=22% Similarity=0.242 Sum_probs=48.9
Q ss_pred eeeccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHh
Q 026207 23 KIIFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVEN 102 (241)
Q Consensus 23 ~~~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 102 (241)
..+.| ++|+||||||||||++++++.+.. ..++++ +.++... ..+. ........+..+..
T Consensus 42 ~~~~G-vlL~Gp~GtGKTtLakala~~~~~----~~i~i~-g~~l~~~------~~~~--------~~~~i~~vf~~a~~ 101 (274)
T 2x8a_A 42 VTPAG-VLLAGPPGCGKTLLAKAVANESGL----NFISVK-GPELLNM------YVGE--------SERAVRQVFQRAKN 101 (274)
T ss_dssp CCCSE-EEEESSTTSCHHHHHHHHHHHTTC----EEEEEE-TTTTCSS------TTHH--------HHHHHHHHHHHHHH
T ss_pred CCCCe-EEEECCCCCcHHHHHHHHHHHcCC----CEEEEE-cHHHHhh------hhhH--------HHHHHHHHHHHHHh
Confidence 34455 999999999999999999998753 346666 4443211 0000 01223445566666
Q ss_pred cCCcEEEEcCCCCH
Q 026207 103 HMPEVIIVDEIGTE 116 (241)
Q Consensus 103 ~~p~vlilDE~~~~ 116 (241)
..|.++++||+...
T Consensus 102 ~~p~i~~~Deid~~ 115 (274)
T 2x8a_A 102 SAPCVIFFDEVDAL 115 (274)
T ss_dssp TCSEEEEEETCTTT
T ss_pred cCCCeEeeehhhhh
Confidence 78999999998653
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.55 E-value=2e-07 Score=80.09 Aligned_cols=72 Identities=22% Similarity=0.296 Sum_probs=50.1
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPE 106 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~ 106 (241)
..++|+||||+||||++++++..+. ...++++ ..++. .... .......+..+..+....|.
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~~~----~~~i~v~-~~~l~------~~~~--------g~~~~~~~~~f~~a~~~~p~ 110 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANECQ----ANFISIK-GPELL------TMWF--------GESEANVREIFDKARQAAPC 110 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHTT----CEEEEEC-HHHHH------HHHH--------TTCTTHHHHHHHHHHHTCSE
T ss_pred ceEEEECCCCcCHHHHHHHHHHHhC----CCEEEEE-hHHHH------hhhc--------CchHHHHHHHHHHHHhcCCe
Confidence 3699999999999999999999874 4556665 33321 0000 11123455677777778899
Q ss_pred EEEEcCCCCHH
Q 026207 107 VIIVDEIGTEA 117 (241)
Q Consensus 107 vlilDE~~~~~ 117 (241)
++++||+....
T Consensus 111 il~iDEid~l~ 121 (301)
T 3cf0_A 111 VLFFDELDSIA 121 (301)
T ss_dssp EEEECSTTHHH
T ss_pred EEEEEChHHHh
Confidence 99999997543
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.54 E-value=7.4e-08 Score=86.96 Aligned_cols=68 Identities=24% Similarity=0.391 Sum_probs=51.1
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCcE
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEV 107 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~v 107 (241)
-+||+||||||||++++++|+.+. ..++.++ ..++... ..| ......+.++..+..+.|.+
T Consensus 208 GiLL~GPPGtGKT~lakAiA~~~~----~~~~~v~-~~~l~~~------~~G--------e~e~~ir~lF~~A~~~aP~I 268 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLVKAVANSTK----AAFIRVN-GSEFVHK------YLG--------EGPRMVRDVFRLARENAPSI 268 (428)
T ss_dssp EEEEESCTTTTHHHHHHHHHHHHT----CEEEEEE-GGGTCCS------SCS--------HHHHHHHHHHHHHHHTCSEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC----CCeEEEe-cchhhcc------ccc--------hhHHHHHHHHHHHHHcCCCe
Confidence 489999999999999999999874 5677777 5444211 111 11345677888899999999
Q ss_pred EEEcCCC
Q 026207 108 IIVDEIG 114 (241)
Q Consensus 108 lilDE~~ 114 (241)
+++||+.
T Consensus 269 ifiDEiD 275 (428)
T 4b4t_K 269 IFIDEVD 275 (428)
T ss_dssp EEEECTH
T ss_pred eechhhh
Confidence 9999984
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=98.54 E-value=1.4e-07 Score=83.53 Aligned_cols=156 Identities=15% Similarity=0.107 Sum_probs=87.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCC-------CC--CcccHHHHHH
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQV-------PE--PSLQHKVMIE 98 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~-------~~--~~~~~~~~~~ 98 (241)
+++|.||||+|||||+..++...... +.+++|++ .+..... . ++.++.+ .. ........+.
T Consensus 76 li~I~G~pGsGKTtlal~la~~~~~~-g~~vlyi~-~E~s~~~------~--~a~~~g~d~~~l~i~~~~~~e~~l~~l~ 145 (366)
T 1xp8_A 76 ITEIYGPESGGKTTLALAIVAQAQKA-GGTCAFID-AEHALDP------V--YARALGVNTDELLVSQPDNGEQALEIME 145 (366)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEEE-SSCCCCH------H--HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHHHHHHHC-CCeEEEEE-CCCChhH------H--HHHHcCCCHHHceeecCCcHHHHHHHHH
Confidence 89999999999999999998877544 57899998 3332110 0 0111111 11 1112222222
Q ss_pred HHH-hcCCcEEEEcCCCCHHh--------------H--H----HHH----HHHhCCcEEEEeecCCChhhh-hcC---C-
Q 026207 99 AVE-NHMPEVIIVDEIGTEAE--------------A--H----ACR----SIAERGVMLIGTAHGEWLENI-IKN---P- 148 (241)
Q Consensus 99 ~~l-~~~p~vlilDE~~~~~d--------------~--~----~~~----~~~~~g~~vi~t~H~~~~~~~-~~~---p- 148 (241)
.+. ..++++||||+++.... . . .+. .+.+.++++|++.|...-.+. +.. |
T Consensus 146 ~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~~~~~~~~fg~p~~~~ 225 (366)
T 1xp8_A 146 LLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVREKIGVMYGNPETTT 225 (366)
T ss_dssp HHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC---------------
T ss_pred HHHhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEecccccCcccCCccccC
Confidence 222 36799999999875531 0 1 111 245679999999998752222 112 2
Q ss_pred ---ccccccccccEEEe---CCh--H-HH----HHHHHHhhhccCCCCCceEEEEEE-cCce
Q 026207 149 ---ILSDLIGGVDTVTL---GDE--E-AR----ARRCQKSILERKAPPTFYFLIEMR-ERHY 196 (241)
Q Consensus 149 ---~l~~l~~~~d~V~~---~~~--~-~~----~~~~~~~~k~r~g~~~~~~~fe~~-~~g~ 196 (241)
.+++. +|.++. .+. . .. ..+.+...|+|.+++.-...|++. ..|+
T Consensus 226 gg~al~~~---a~~rl~L~r~~~~~k~~~~~~g~~~~v~v~Knr~~p~~~~~~f~i~~~~Gi 284 (366)
T 1xp8_A 226 GGRALKFY---ASVRLDVRKIGQPTKVGNDAVANTVKIKTVKNKVAAPFKEVELALVYGKGF 284 (366)
T ss_dssp CHHHHHHH---CSEEEEEEEESCCC------CEEEEEEEEEEESSSCCCCEEEEEEETTTEE
T ss_pred Ccchhhhe---eeEEEEEEecchhcccCccccCCEEEEEEEcCCCCCCCceEEEEEEeCCCc
Confidence 23444 677665 221 0 00 114456678999998777788886 5565
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.53 E-value=2.1e-07 Score=80.95 Aligned_cols=74 Identities=19% Similarity=0.314 Sum_probs=51.7
Q ss_pred eccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcC
Q 026207 25 IFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHM 104 (241)
Q Consensus 25 ~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 104 (241)
+...++|+||||+|||+++++++..+. +..++++. ..++... .. .......+..+..+...+
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~~---~~~~~~i~-~~~l~~~------~~--------g~~~~~~~~lf~~a~~~~ 105 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEAN---NSTFFSIS-SSDLVSK------WL--------GESEKLVKNLFQLARENK 105 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTT---SCEEEEEE-CCSSCCS------SC--------CSCHHHHHHHHHHHHHTS
T ss_pred CCceEEEECCCCccHHHHHHHHHHHcC---CCcEEEEE-hHHHHhh------hh--------hHHHHHHHHHHHHHHhcC
Confidence 335789999999999999999999873 24667777 4443211 00 111234556677777789
Q ss_pred CcEEEEcCCCCH
Q 026207 105 PEVIIVDEIGTE 116 (241)
Q Consensus 105 p~vlilDE~~~~ 116 (241)
|.+||+||+...
T Consensus 106 ~~vl~iDEid~l 117 (322)
T 1xwi_A 106 PSIIFIDEIDSL 117 (322)
T ss_dssp SEEEEEETTTGG
T ss_pred CcEEEeecHHHh
Confidence 999999999765
|
| >4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.52 E-value=8.2e-08 Score=87.08 Aligned_cols=70 Identities=24% Similarity=0.272 Sum_probs=52.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCcE
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEV 107 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~v 107 (241)
-+||+||||||||++++++|+.+. ..++.++ ..++... .. .......+.++..+..+.|.+
T Consensus 245 GILLyGPPGTGKTlLAkAiA~e~~----~~fi~vs-~s~L~sk------~v--------Gesek~ir~lF~~Ar~~aP~I 305 (467)
T 4b4t_H 245 GILLYGPPGTGKTLCARAVANRTD----ATFIRVI-GSELVQK------YV--------GEGARMVRELFEMARTKKACI 305 (467)
T ss_dssp EEEECSCTTSSHHHHHHHHHHHHT----CEEEEEE-GGGGCCC------SS--------SHHHHHHHHHHHHHHHTCSEE
T ss_pred ceEeeCCCCCcHHHHHHHHHhccC----CCeEEEE-hHHhhcc------cC--------CHHHHHHHHHHHHHHhcCCce
Confidence 589999999999999999999874 5667777 5554211 11 112345678888999999999
Q ss_pred EEEcCCCCH
Q 026207 108 IIVDEIGTE 116 (241)
Q Consensus 108 lilDE~~~~ 116 (241)
||+||+.+.
T Consensus 306 IfiDEiDai 314 (467)
T 4b4t_H 306 IFFDEIDAV 314 (467)
T ss_dssp EEEECCTTT
T ss_pred Eeecccccc
Confidence 999998644
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.50 E-value=3.2e-07 Score=79.94 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=22.4
Q ss_pred EEEEeCCCchHHHHHHHHHH-hcccc
Q 026207 29 FLSYFRPGVGKTTVMREIAR-VLSDE 53 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~-~l~~~ 53 (241)
++|+||||+||||+++.+++ ...+.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~ 64 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPG 64 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 89999999999999999999 55555
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=98.50 E-value=3.8e-07 Score=82.80 Aligned_cols=157 Identities=18% Similarity=0.220 Sum_probs=87.5
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC---------CCCccccc--cc---------------
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD---------GDIPHSAI--GT--------------- 80 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~---------~~~~~~~~--~~--------------- 80 (241)
.+++|.|+||+|||||+.+++...... |.+|+|++ .++.... ..++...+ +.
T Consensus 198 ~liiIaG~pG~GKTtlal~ia~~~a~~-g~~vl~fS-lEms~~ql~~R~~~~~~~i~~~~l~~g~~~l~~~~~~~l~~a~ 275 (444)
T 3bgw_A 198 NFVLIAARPSMGKTAFALKQAKNMSDN-DDVVNLHS-LEMGKKENIKRLIVTAGSINAQKIKAARRDFASEDWGKLSMAI 275 (444)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHHHT-TCEEEEEC-SSSCTTHHHHHHHHHHSCCCHHHHHHTGGGTCCSCHHHHHHHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHc-CCEEEEEE-CCCCHHHHHHHHHHHHcCCCHHHHhcccCCCCHHHHHHHHHHH
Confidence 389999999999999999999887665 68999997 4432110 00000000 00
Q ss_pred --h--hhcCC-CCCcccHHHHHHHH----HhcCCc--EEEEcCCCCHHhH-------H-------HH-HHHHhCCcEEEE
Q 026207 81 --A--RRMQV-PEPSLQHKVMIEAV----ENHMPE--VIIVDEIGTEAEA-------H-------AC-RSIAERGVMLIG 134 (241)
Q Consensus 81 --~--~~~~~-~~~~~~~~~~~~~~----l~~~p~--vlilDE~~~~~d~-------~-------~~-~~~~~~g~~vi~ 134 (241)
. ..+.+ ...+.....+.+.+ ..++++ +||+|.++..... . .+ ..+++.|+++++
T Consensus 276 ~~l~~~~l~i~d~~~~s~~~i~~~ir~l~~~~~~~~~lIVID~Lq~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~ 355 (444)
T 3bgw_A 276 GEISNSNINIFDKAGQSVNYIWSKTRQTKRKNPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMARELDVVVIA 355 (444)
T ss_dssp HHHHTSCEEEECCSSCBHHHHHHHHHHHHHHSCSSCEEEEEECSTTSBCSCSSSCHHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHhcCCEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEecHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEE
Confidence 0 00111 11233444443332 235899 9999998754211 1 11 145677999999
Q ss_pred eecCCChhhh--hcCCccccccc------cccEEEe--CChH------HHHHHHHHhhhccCCCCCc
Q 026207 135 TAHGEWLENI--IKNPILSDLIG------GVDTVTL--GDEE------ARARRCQKSILERKAPPTF 185 (241)
Q Consensus 135 t~H~~~~~~~--~~~p~l~~l~~------~~d~V~~--~~~~------~~~~~~~~~~k~r~g~~~~ 185 (241)
+.|.+...+. -.+|.+.++-+ .+|.|++ .+.. ......+...|+|.|+++.
T Consensus 356 lsql~r~~e~r~~krp~lsdlr~Sg~ieq~aD~Vi~L~r~~~~~~~~~~~~~~~l~i~K~R~G~~g~ 422 (444)
T 3bgw_A 356 LSQLSRQVEQRQDKRPMLSDLRESGQLEQDADIIEFLYRDDYYDKESESKNIVEVIIAKHRDGPVGT 422 (444)
T ss_dssp EEECCGGGGGSSCCCCCGGGCCSCSHHHHHCSEEEECCBGGGTCTTCSSTTEEEEEEEEESSSCCEE
T ss_pred EecCCccccccCCCCCchhhhhhhhhHHhhCCEEEEEeccccccccccCCCeEEEEEEcccCCCCeE
Confidence 9998752211 12354433321 1899998 2111 0000234556899988763
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=98.49 E-value=2.2e-07 Score=84.28 Aligned_cols=35 Identities=26% Similarity=0.178 Sum_probs=30.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
+++|.|+||+|||||+..++.......|.+|+|++
T Consensus 202 l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~s 236 (444)
T 2q6t_A 202 LNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYS 236 (444)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 89999999999999999999987654467889887
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.48 E-value=6.6e-08 Score=83.69 Aligned_cols=86 Identities=22% Similarity=0.239 Sum_probs=53.4
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhh-----cCCCCCcccHHH---HHH
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARR-----MQVPEPSLQHKV---MIE 98 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~---~~~ 98 (241)
.+++|+|||||||||++..+++.+.+. +.+|..++.. .. ..... .+......+ +...+++..++. .++
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~l~~~-g~kV~lv~~D-~~-r~~a~-eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~ 180 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKMFVDE-GKSVVLAAAD-TF-RAAAI-EQLKIWGERVGATVISHSEGADPAAVAFDAVA 180 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEEC-TT-CHHHH-HHHHHHHHHHTCEEECCSTTCCHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHHHHHhc-CCEEEEEccc-cc-cHHHH-HHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 489999999999999999999999876 5677777621 11 00000 000000011 111223334444 566
Q ss_pred HHHhcCCcEEEEcCCCCH
Q 026207 99 AVENHMPEVIIVDEIGTE 116 (241)
Q Consensus 99 ~~l~~~p~vlilDE~~~~ 116 (241)
.++..+|+++|+|+|...
T Consensus 181 ~a~~~~~dvvIiDtpg~~ 198 (306)
T 1vma_A 181 HALARNKDVVIIDTAGRL 198 (306)
T ss_dssp HHHHTTCSEEEEEECCCC
T ss_pred HHHhcCCCEEEEECCCch
Confidence 667889999999999753
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=1.6e-07 Score=75.27 Aligned_cols=107 Identities=12% Similarity=0.112 Sum_probs=56.1
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccC-CCCCCccccccch-hhcCCCCCcccHHHHHHHHHhcC
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIG-GDGDIPHSAIGTA-RRMQVPEPSLQHKVMIEAVENHM 104 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~ 104 (241)
.+++++||+|+||||++..++...... +.+++++....+.. +...+.. ..+.. ...... ....+++.+ ..+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~-g~~v~~~~~~~d~r~~~~~i~s-~~g~~~~~~~~~----~~~~~~~~~-~~~ 76 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLG-KKKVAVFKPKIDSRYHSTMIVS-HSGNGVEAHVIE----RPEEMRKYI-EED 76 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHT-TCEEEEEEEC-----CCCEECC-----CEECEEES----SGGGGGGGC-CTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEeeccccccCcccEEe-cCCCceeeEEEC----CHHHHHHHh-cCC
Confidence 478999999999999997777765433 56777664121110 0000000 00000 000000 111111111 135
Q ss_pred CcEEEEcCCCCH-HhH-HHHHHHHhCCcEEEEeecCCC
Q 026207 105 PEVIIVDEIGTE-AEA-HACRSIAERGVMLIGTAHGEW 140 (241)
Q Consensus 105 p~vlilDE~~~~-~d~-~~~~~~~~~g~~vi~t~H~~~ 140 (241)
+++|++||++.. .+. ..+....+.|..++.+.+..+
T Consensus 77 ~dvviIDE~Q~~~~~~~~~l~~l~~~~~~Vi~~Gl~~~ 114 (184)
T 2orw_A 77 TRGVFIDEVQFFNPSLFEVVKDLLDRGIDVFCAGLDLT 114 (184)
T ss_dssp EEEEEECCGGGSCTTHHHHHHHHHHTTCEEEEEEESBC
T ss_pred CCEEEEECcccCCHHHHHHHHHHHHCCCCEEEEeeccc
Confidence 799999999865 222 334445566888888777654
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.45 E-value=2.9e-07 Score=76.93 Aligned_cols=67 Identities=22% Similarity=0.258 Sum_probs=45.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCcE
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEV 107 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~v 107 (241)
-++|+||||+||||+++++++... ..+++++ ..++... .. .......+..+..+....|.+
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~~----~~~~~i~-~~~~~~~------~~--------~~~~~~~~~~~~~a~~~~~~i 107 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEAK----VPFFTIS-GSDFVEM------FV--------GVGASRVRDMFEQAKKAAPCI 107 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT----CCEEEEC-SCSSTTS------CC--------CCCHHHHHHHHHHHHTTCSEE
T ss_pred eEEEECcCCCCHHHHHHHHHHHcC----CCEEEEe-HHHHHHH------hh--------hhhHHHHHHHHHHHHHcCCee
Confidence 489999999999999999999763 3456676 4433111 00 011223445666666778899
Q ss_pred EEEcCC
Q 026207 108 IIVDEI 113 (241)
Q Consensus 108 lilDE~ 113 (241)
+++||+
T Consensus 108 l~iDei 113 (257)
T 1lv7_A 108 IFIDEI 113 (257)
T ss_dssp EEETTH
T ss_pred ehhhhh
Confidence 999998
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.45 E-value=2.1e-07 Score=78.77 Aligned_cols=71 Identities=27% Similarity=0.364 Sum_probs=48.9
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPE 106 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~ 106 (241)
..++|+||||+||||++++++..+. ..++++. ..++... ..+ ......+..+..+....|.
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~~~----~~~~~v~-~~~~~~~------~~~--------~~~~~~~~~~~~~~~~~~~ 112 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATETN----ATFIRVV-GSELVKK------FIG--------EGASLVKDIFKLAKEKAPS 112 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHHTT----CEEEEEE-GGGGCCC------STT--------HHHHHHHHHHHHHHHTCSE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhC----CCEEEEe-hHHHHHh------ccc--------hHHHHHHHHHHHHHHcCCe
Confidence 3699999999999999999999864 4666665 3333111 000 0122345566777778899
Q ss_pred EEEEcCCCCH
Q 026207 107 VIIVDEIGTE 116 (241)
Q Consensus 107 vlilDE~~~~ 116 (241)
+|+|||+...
T Consensus 113 vl~iDEid~l 122 (285)
T 3h4m_A 113 IIFIDEIDAI 122 (285)
T ss_dssp EEEEETTHHH
T ss_pred EEEEECHHHh
Confidence 9999999654
|
| >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 | Back alignment and structure |
|---|
Probab=98.45 E-value=4.2e-07 Score=83.56 Aligned_cols=158 Identities=14% Similarity=0.122 Sum_probs=86.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC---------CCCcccc---c--cch------------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD---------GDIPHSA---I--GTA------------ 81 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~---------~~~~~~~---~--~~~------------ 81 (241)
+++|.|+||+|||||+.+++.......|.+|+|++ .++.... ..++... + +..
T Consensus 244 l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s-~E~s~~~l~~r~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~ 322 (503)
T 1q57_A 244 VIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAM-LEESVEETAEDLIGLHNRVRLRQSDSLKREIIENGKFDQWFDEL 322 (503)
T ss_dssp EEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEE-SSSCHHHHHHHHHHHHTTSCCTTCHHHHHHHHHTSHHHHHHHHH
T ss_pred EEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEe-ccCCHHHHHHHHHHHHcCCChhhccccccCCCCHHHHHHHHHHH
Confidence 89999999999999999999877654357899987 4332100 0000000 0 000
Q ss_pred ---hhcCCCC--CcccHHHHHHHH----HhcCCcEEEEcCCCCHH------hH--------HHH-HHHHhCCcEEEEeec
Q 026207 82 ---RRMQVPE--PSLQHKVMIEAV----ENHMPEVIIVDEIGTEA------EA--------HAC-RSIAERGVMLIGTAH 137 (241)
Q Consensus 82 ---~~~~~~~--~~~~~~~~~~~~----l~~~p~vlilDE~~~~~------d~--------~~~-~~~~~~g~~vi~t~H 137 (241)
..+.+.+ .......+.+.+ ..++|+++|||.++... +. ..+ ..+++.|++++++.|
T Consensus 323 ~~~~~l~i~~~~~~~~~~~i~~~i~~~~~~~~~~lvVID~l~~l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q 402 (503)
T 1q57_A 323 FGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICH 402 (503)
T ss_dssp HTTTCEEEECCC---CHHHHHHHHHHHHHTTCCSEEEEECTTCCCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred hccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEccchhcCCCCCCCCHHHHHHHHHHHHHHHHHHHCCeEEEEEc
Confidence 0011111 124444444333 34689999999987532 11 111 245677999999999
Q ss_pred CCChhh-----hhcCCccccccc------cccEEEe--CChH--HHHHHHHHhhhccC-CCCCce
Q 026207 138 GEWLEN-----IIKNPILSDLIG------GVDTVTL--GDEE--ARARRCQKSILERK-APPTFY 186 (241)
Q Consensus 138 ~~~~~~-----~~~~p~l~~l~~------~~d~V~~--~~~~--~~~~~~~~~~k~r~-g~~~~~ 186 (241)
.+..+. .-.+|.+.++-+ .+|.|++ .+.. ....+.+...|+|| |++...
T Consensus 403 ~~r~~~~~~~~~~~~p~l~dlr~s~~ie~~aD~vi~l~r~~~~~~~~~~~l~v~K~R~~G~~g~~ 467 (503)
T 1q57_A 403 LKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQGDMPNLVLVRILKCRFTGDTGIA 467 (503)
T ss_dssp CCCCSSSSCSTTCCCCCSSSCSSSSHHHHHCSEEEEEEECSSSSCTTEEEEEEEEETTTCCCEEE
T ss_pred CCchhccCccccCCCCChhhhccchHhhecCcEEEEEEeCCcCCCCCeEEEEEEeccCCCCCCce
Confidence 886221 112333333321 1899987 2111 00114567789995 876543
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=1.2e-07 Score=86.01 Aligned_cols=98 Identities=13% Similarity=0.232 Sum_probs=58.5
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcccc-CCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCC
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDE-FQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMP 105 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~-~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p 105 (241)
..++|+||||+|||||+++++..+... ++.++++++ ..++. ...... +. .... ..+......+|
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~-~~~~~------~~~~~~---~~----~~~~-~~~~~~~~~~~ 195 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT-SEKFL------NDLVDS---MK----EGKL-NEFREKYRKKV 195 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE-HHHHH------HHHHHH---HH----TTCH-HHHHHHHTTTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee-HHHHH------HHHHHH---HH----cccH-HHHHHHhcCCC
Confidence 469999999999999999999987543 246778876 33221 000000 00 0011 12222233489
Q ss_pred cEEEEcCCCCHHh----HHHH----HHHHhCCcEEEEeecCC
Q 026207 106 EVIIVDEIGTEAE----AHAC----RSIAERGVMLIGTAHGE 139 (241)
Q Consensus 106 ~vlilDE~~~~~d----~~~~----~~~~~~g~~vi~t~H~~ 139 (241)
++|+|||++...+ ...+ ......|..+|+++|..
T Consensus 196 ~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 196 DILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp SEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 9999999976543 1122 22346688888888764
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=98.42 E-value=5.5e-07 Score=73.50 Aligned_cols=36 Identities=8% Similarity=0.138 Sum_probs=30.6
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
...++|+||||+||||+++.++..+... +.++.+++
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~~~~-~~~~~~~~ 87 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARANEL-ERRSFYIP 87 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEE
Confidence 4579999999999999999999988654 56778877
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=98.41 E-value=1.4e-07 Score=88.85 Aligned_cols=27 Identities=15% Similarity=0.156 Sum_probs=23.0
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSD 52 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~ 52 (241)
-+.++|+||||||||||+++|+|...|
T Consensus 45 lp~iaIvG~nGsGKSTLL~~I~Gl~~P 71 (608)
T 3szr_A 45 LPAIAVIGDQSSGKSSVLEALSGVALP 71 (608)
T ss_dssp CCCEECCCCTTSCHHHHHHHHHSCC--
T ss_pred CCeEEEECCCCChHHHHHHHHhCCCCC
Confidence 345999999999999999999999866
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.41 E-value=3.3e-07 Score=76.37 Aligned_cols=71 Identities=18% Similarity=0.214 Sum_probs=46.1
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPE 106 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~ 106 (241)
..++|+||||+||||++++++..+. ..+++++ ..++... ..+ ......+..+..+....|.
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~~~----~~~~~~~-~~~~~~~------~~~--------~~~~~~~~~~~~a~~~~~~ 100 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATEAQ----VPFLAMA-GAEFVEV------IGG--------LGAARVRSLFKEARARAPC 100 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHT----CCEEEEE-TTTTSSS------STT--------HHHHHHHHHHHHHHHTCSE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC----CCEEEec-hHHHHhh------ccC--------hhHHHHHHHHHHHHhcCCe
Confidence 3589999999999999999999763 4566666 3333110 000 0112344566666677899
Q ss_pred EEEEcCCCCH
Q 026207 107 VIIVDEIGTE 116 (241)
Q Consensus 107 vlilDE~~~~ 116 (241)
+|+|||+...
T Consensus 101 vl~iDeid~l 110 (262)
T 2qz4_A 101 IVYIDEIDAV 110 (262)
T ss_dssp EEEEECC---
T ss_pred EEEEeCcchh
Confidence 9999999765
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=8.2e-07 Score=73.91 Aligned_cols=36 Identities=28% Similarity=0.341 Sum_probs=27.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcccc----CCCeEEEEcC
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDE----FQKRVVIVDT 63 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~----~g~~v~~i~~ 63 (241)
++.|+|||||||||+++.|++.+... ...++.+++.
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~ 66 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQ 66 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeC
Confidence 79999999999999999999976321 0134566663
|
| >2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=98.38 E-value=4.3e-07 Score=75.04 Aligned_cols=113 Identities=18% Similarity=0.219 Sum_probs=62.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcc-cCC---C-CCCccccccchhhcCCCCCcccHHHHHHHHHh
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNE-IGG---D-GDIPHSAIGTARRMQVPEPSLQHKVMIEAVEN 102 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e-~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 102 (241)
.+++.|++|+||||++..++..+... |.+|++++-... ... . ...+..... ... ..+....+..+..++.
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~-G~~V~v~d~D~q~~~~~~al~~gl~~~~~~---~~~-~~~~~~~e~~l~~~L~ 82 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQ-GVRVMAGVVETHGRAETEALLNGLPQQPLL---RTE-YRGMTLEEMDLDALLK 82 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHT-TCCEEEEECCCTTCHHHHHHHTTSCBCCCE---EEE-ETTEEEEECCHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHC-CCCEEEEEeCCCCChhHHHHhcCccccCcc---eee-cCCcccccccHHHHHh
Confidence 48899999999999999999888655 677766652110 000 0 000000000 000 1111111111223333
Q ss_pred cCCcEEEEcCCCCHH--------hHHHHHHHHhCCcEEEEeecCC---Chhhhh
Q 026207 103 HMPEVIIVDEIGTEA--------EAHACRSIAERGVMLIGTAHGE---WLENII 145 (241)
Q Consensus 103 ~~p~vlilDE~~~~~--------d~~~~~~~~~~g~~vi~t~H~~---~~~~~~ 145 (241)
.+|+++|+||+.... -...+.....+|..+++|+|.. ++.+.+
T Consensus 83 ~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~Nlqh~esl~d~v 136 (228)
T 2r8r_A 83 AAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVNVQHLESLNDQV 136 (228)
T ss_dssp HCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEEGGGBGGGHHHH
T ss_pred cCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEccccccccHHHHH
Confidence 689999999987531 1133344667899999998855 544554
|
| >2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A | Back alignment and structure |
|---|
Probab=98.38 E-value=9e-07 Score=80.25 Aligned_cols=73 Identities=19% Similarity=0.330 Sum_probs=50.2
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCC
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMP 105 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p 105 (241)
...++|+||||+|||+++++++..+. +..+++++ ..++... .. .......+..+..+....|
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~~---~~~~~~v~-~~~l~~~------~~--------g~~~~~~~~~f~~a~~~~~ 228 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEAN---NSTFFSIS-SSDLVSK------WL--------GESEKLVKNLFQLARENKP 228 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHCC---SSEEEEEC-CC-----------------------CCCTHHHHHHHHHHSCS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcC---CCCEEEEe-HHHHHhh------hc--------chHHHHHHHHHHHHHHcCC
Confidence 35799999999999999999999873 24667776 4433211 00 1113345667777777899
Q ss_pred cEEEEcCCCCH
Q 026207 106 EVIIVDEIGTE 116 (241)
Q Consensus 106 ~vlilDE~~~~ 116 (241)
.+|||||+...
T Consensus 229 ~vl~iDEid~l 239 (444)
T 2zan_A 229 SIIFIDEIDSL 239 (444)
T ss_dssp EEEEESCTTTT
T ss_pred eEEEEechHhh
Confidence 99999999755
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=1.9e-07 Score=77.92 Aligned_cols=70 Identities=23% Similarity=0.332 Sum_probs=43.7
Q ss_pred eccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcC
Q 026207 25 IFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHM 104 (241)
Q Consensus 25 ~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 104 (241)
+.| ++|+||||||||||++++++.+. ...++++ ..++... ..+ .........++.+....
T Consensus 49 ~~g-~ll~G~~G~GKTtl~~~i~~~~~----~~~i~~~-~~~~~~~------~~~--------~~~~~i~~~~~~~~~~~ 108 (254)
T 1ixz_A 49 PKG-VLLVGPPGVGKTHLARAVAGEAR----VPFITAS-GSDFVEM------FVG--------VGAARVRDLFETAKRHA 108 (254)
T ss_dssp CSE-EEEECCTTSSHHHHHHHHHHHTT----CCEEEEE-HHHHHHS------CTT--------HHHHHHHHHHHHHTTSS
T ss_pred CCe-EEEECCCCCCHHHHHHHHHHHhC----CCEEEee-HHHHHHH------Hhh--------HHHHHHHHHHHHHHhcC
Confidence 445 99999999999999999999875 2335554 2222100 000 00112334455555567
Q ss_pred CcEEEEcCCC
Q 026207 105 PEVIIVDEIG 114 (241)
Q Consensus 105 p~vlilDE~~ 114 (241)
|.++++||+.
T Consensus 109 ~~i~~~Deid 118 (254)
T 1ixz_A 109 PCIVFIDEID 118 (254)
T ss_dssp SEEEEEETHH
T ss_pred CeEEEehhhh
Confidence 8999999984
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.36 E-value=1.3e-06 Score=76.52 Aligned_cols=107 Identities=18% Similarity=0.261 Sum_probs=59.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccc-hhhcCC--CCCcccHHHHHH----HH
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGT-ARRMQV--PEPSLQHKVMIE----AV 100 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~----~~ 100 (241)
.++|+||||+||||+++.+++.+.+..+..+++++...... +...... ...+.. ...+......+. .+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l 120 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRN-----FTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHL 120 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCS-----HHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCC-----HHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999988654235677776222110 0000000 011111 111222222222 22
Q ss_pred H-hcCCcEEEEcCCCCHHhHH---HHHHHH----h---CCcEEEEeecCCC
Q 026207 101 E-NHMPEVIIVDEIGTEAEAH---ACRSIA----E---RGVMLIGTAHGEW 140 (241)
Q Consensus 101 l-~~~p~vlilDE~~~~~d~~---~~~~~~----~---~g~~vi~t~H~~~ 140 (241)
. ..+|.+|+|||+... +.. .+.... . .+..+|+++|...
T Consensus 121 ~~~~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 121 RERDLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp HHTTCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred hhcCCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 2 245889999999875 332 222222 2 4677888888764
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=98.36 E-value=2.8e-07 Score=79.88 Aligned_cols=73 Identities=21% Similarity=0.323 Sum_probs=50.5
Q ss_pred eccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcC
Q 026207 25 IFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHM 104 (241)
Q Consensus 25 ~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 104 (241)
+..-++|+||||+|||+++++++.... ..+++++ ..++... ..+ ......+..+..+...+
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~~----~~~~~v~-~~~l~~~------~~g--------~~~~~~~~~f~~a~~~~ 110 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEAN----STFFSVS-SSDLVSK------WMG--------ESEKLVKQLFAMARENK 110 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHHT----CEEEEEE-HHHHHTT------TGG--------GHHHHHHHHHHHHHHTS
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHC----CCEEEEc-hHHHhhc------ccc--------hHHHHHHHHHHHHHhcC
Confidence 344699999999999999999998753 5667776 3333110 000 11234456677777889
Q ss_pred CcEEEEcCCCCH
Q 026207 105 PEVIIVDEIGTE 116 (241)
Q Consensus 105 p~vlilDE~~~~ 116 (241)
|.+|+|||+...
T Consensus 111 ~~vl~iDEid~l 122 (322)
T 3eie_A 111 PSIIFIDQVDAL 122 (322)
T ss_dssp SEEEEEECGGGG
T ss_pred CeEEEechhhhh
Confidence 999999998754
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=98.35 E-value=1.1e-06 Score=76.94 Aligned_cols=134 Identities=16% Similarity=0.207 Sum_probs=78.0
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC---C------CCccccc--cc---------------
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD---G------DIPHSAI--GT--------------- 80 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~---~------~~~~~~~--~~--------------- 80 (241)
.+++|.|+||+|||||+..++...... +.+|+|++ .+..... . .++...+ +.
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a~~-g~~Vl~fS-lEms~~ql~~Rlls~~~~v~~~~l~~g~Ls~~e~~~l~~a~~~ 124 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSALND-DRGVAVFS-LEMSAEQLALRALSDLTSINMHDLESGRLDDDQWENLAKCFDH 124 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT-TCEEEEEE-SSSCHHHHHHHHHHHHHCCCHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHc-CCeEEEEe-CCCCHHHHHHHHHHHhhCCCHHHHhcCCCCHHHHHHHHHHHHH
Confidence 389999999999999999999887654 67899987 4332100 0 0000000 00
Q ss_pred h--hhcCCC-CCcccHHHHHHH---HH-hc-CCcEEEEcCCCCHHhHH--------------HH-HHHHhCCcEEEEeec
Q 026207 81 A--RRMQVP-EPSLQHKVMIEA---VE-NH-MPEVIIVDEIGTEAEAH--------------AC-RSIAERGVMLIGTAH 137 (241)
Q Consensus 81 ~--~~~~~~-~~~~~~~~~~~~---~l-~~-~p~vlilDE~~~~~d~~--------------~~-~~~~~~g~~vi~t~H 137 (241)
. ..+.+. ..+.....+.+. +. .+ ++++||+|.++...... .+ ..|++.+++|++..|
T Consensus 125 l~~~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVIDyLqlm~~~~~~~~r~~ei~~isr~LK~lAkel~vpVi~lsQ 204 (338)
T 4a1f_A 125 LSQKKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDYLQLMSGSKATKERHEQIAEISRELKTLARELEIPIIALVQ 204 (338)
T ss_dssp HHHSCEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEEEEECCCTHHHHHHCCCCHHHHHHHHHHHHHHHTSCEEEEEE
T ss_pred HhcCCeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEechHHhcCCCCCCChHHHHHHHHHHHHHHHHHcCCeEEEEEe
Confidence 0 001111 123334433333 22 33 68999999987553221 11 246678999999999
Q ss_pred CCChhhh--hcCCccccccc------cccEEEe
Q 026207 138 GEWLENI--IKNPILSDLIG------GVDTVTL 162 (241)
Q Consensus 138 ~~~~~~~--~~~p~l~~l~~------~~d~V~~ 162 (241)
.+...+. -.+|.+.++-+ .+|.|++
T Consensus 205 l~R~~e~r~dkrP~lsDLreSg~IeqdAD~Vl~ 237 (338)
T 4a1f_A 205 LNRSLENRDDKRPILSDIKDSGGIEQDADIVLF 237 (338)
T ss_dssp CCGGGGGSSSCSCCGGGSEETTEECCCCSEEEE
T ss_pred cCccccccccCCCChHhcccchhhhhhCcEEEE
Confidence 9863221 13466666532 2899988
|
| >1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=98.35 E-value=1.2e-06 Score=70.72 Aligned_cols=107 Identities=15% Similarity=0.121 Sum_probs=60.0
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccC-CCCCCccccccc-hhhcCCCCCcccHHHHHHHHHhcC
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIG-GDGDIPHSAIGT-ARRMQVPEPSLQHKVMIEAVENHM 104 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~ 104 (241)
.+.+++||+|+||||.+..++...... |.+|+.+....... ....+.. ..+. .......+ ...+++.+. .+
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~-g~kV~v~k~~~d~r~~~~~i~s-~~g~~~~a~~~~~----~~~i~~~~~-~~ 81 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIA-KQKIQVFKPEIDNRYSKEDVVS-HMGEKEQAVAIKN----SREILKYFE-ED 81 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEEEC-------CEEEC-TTSCEEECEEESS----STHHHHHCC-TT
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHC-CCEEEEEEeccCccchHHHHHh-hcCCceeeEeeCC----HHHHHHHHh-cc
Confidence 489999999999999999998887544 67777774111100 0000000 0010 00011111 113333222 25
Q ss_pred CcEEEEcCCCCH--HhHHHHHHHHhCCcEEEEeecCCC
Q 026207 105 PEVIIVDEIGTE--AEAHACRSIAERGVMLIGTAHGEW 140 (241)
Q Consensus 105 p~vlilDE~~~~--~d~~~~~~~~~~g~~vi~t~H~~~ 140 (241)
.++|++||++-. ...+.+....+.|+.||.+.+.++
T Consensus 82 ~dvViIDEaqfl~~~~v~~l~~l~~~~~~Vi~~Gl~~d 119 (191)
T 1xx6_A 82 TEVIAIDEVQFFDDEIVEIVNKIAESGRRVICAGLDMD 119 (191)
T ss_dssp CSEEEECSGGGSCTHHHHHHHHHHHTTCEEEEEECSBC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEecccc
Confidence 799999998764 122344455667999999888665
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=7.6e-07 Score=76.59 Aligned_cols=37 Identities=22% Similarity=0.389 Sum_probs=32.6
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
..+++|+||||+||||++..+++.+.+..|.+|.+++
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~ 141 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFIT 141 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 3489999999999999999999999865577888887
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=1.4e-06 Score=75.33 Aligned_cols=95 Identities=9% Similarity=0.159 Sum_probs=55.4
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPE 106 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~ 106 (241)
..++|+||||+||||++++++..+... +.++++++ ..++. ...... +. .......... ..+++
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~-~~~~~~i~-~~~~~------~~~~~~---~~----~~~~~~~~~~--~~~~~ 100 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKR-GYRVIYSS-ADDFA------QAMVEH---LK----KGTINEFRNM--YKSVD 100 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHT-TCCEEEEE-HHHHH------HHHHHH---HH----HTCHHHHHHH--HHTCS
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHC-CCEEEEEE-HHHHH------HHHHHH---HH----cCcHHHHHHH--hcCCC
Confidence 469999999999999999999988654 56788886 33221 000000 00 0011111221 13589
Q ss_pred EEEEcCCCCHHh---H-HHH----HHHHhCCcEEEEeecC
Q 026207 107 VIIVDEIGTEAE---A-HAC----RSIAERGVMLIGTAHG 138 (241)
Q Consensus 107 vlilDE~~~~~d---~-~~~----~~~~~~g~~vi~t~H~ 138 (241)
+|++||++.... . ..+ ......|..++++++.
T Consensus 101 vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~ 140 (324)
T 1l8q_A 101 LLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDR 140 (324)
T ss_dssp EEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred EEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 999999976532 1 111 1234566776666653
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=98.31 E-value=5.9e-07 Score=72.16 Aligned_cols=35 Identities=29% Similarity=0.223 Sum_probs=29.6
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
..++|+||||+||||++++++..+... +.+++++.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~-~~~~~~~~ 89 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR-NVSSLIVY 89 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEE
Confidence 579999999999999999999988654 56777765
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.31 E-value=3.7e-07 Score=77.36 Aligned_cols=70 Identities=23% Similarity=0.332 Sum_probs=44.0
Q ss_pred eccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcC
Q 026207 25 IFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHM 104 (241)
Q Consensus 25 ~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 104 (241)
+.| ++|+||||||||||++++++.+. ...++++ ..++... ..+ .........++.+....
T Consensus 73 ~~g-vll~Gp~GtGKTtl~~~i~~~~~----~~~i~~~-~~~~~~~------~~~--------~~~~~i~~~~~~~~~~~ 132 (278)
T 1iy2_A 73 PKG-VLLVGPPGVGKTHLARAVAGEAR----VPFITAS-GSDFVEM------FVG--------VGAARVRDLFETAKRHA 132 (278)
T ss_dssp CCE-EEEECCTTSSHHHHHHHHHHHTT----CCEEEEE-HHHHHHS------TTT--------HHHHHHHHHHHHHHTSC
T ss_pred CCe-EEEECCCcChHHHHHHHHHHHcC----CCEEEec-HHHHHHH------Hhh--------HHHHHHHHHHHHHHhcC
Confidence 445 89999999999999999999875 2335554 2222100 000 00112334555555567
Q ss_pred CcEEEEcCCC
Q 026207 105 PEVIIVDEIG 114 (241)
Q Consensus 105 p~vlilDE~~ 114 (241)
|.++++||+.
T Consensus 133 ~~i~~iDeid 142 (278)
T 1iy2_A 133 PCIVFIDEID 142 (278)
T ss_dssp SEEEEEETHH
T ss_pred CcEEehhhhH
Confidence 8999999984
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=5e-07 Score=79.54 Aligned_cols=71 Identities=20% Similarity=0.312 Sum_probs=48.3
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPE 106 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~ 106 (241)
.-++|+||||+|||+++++++..+. ..+++++ ..++... . ........+..+..+....|.
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~~----~~~~~v~-~~~l~~~------~--------~g~~~~~~~~~f~~a~~~~~~ 145 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEAN----STFFSVS-SSDLVSK------W--------MGESEKLVKQLFAMARENKPS 145 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT----CEEEEEE-HHHHHSC------C-----------CHHHHHHHHHHHHHTSSE
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhC----CCEEEee-HHHHhhh------h--------cchHHHHHHHHHHHHHHcCCe
Confidence 3589999999999999999999873 4566665 3332110 0 011123345566667777899
Q ss_pred EEEEcCCCCH
Q 026207 107 VIIVDEIGTE 116 (241)
Q Consensus 107 vlilDE~~~~ 116 (241)
+|||||+...
T Consensus 146 vl~iDEid~l 155 (355)
T 2qp9_X 146 IIFIDQVDAL 155 (355)
T ss_dssp EEEEECGGGG
T ss_pred EEEEechHhh
Confidence 9999998755
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=4.1e-07 Score=78.22 Aligned_cols=91 Identities=16% Similarity=0.201 Sum_probs=54.9
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhh--cCCCC------CcccHHHHH
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARR--MQVPE------PSLQHKVMI 97 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~--~~~~~------~~~~~~~~~ 97 (241)
..+++++|++|+||||++..+++.+.+. +.+|..++.... ..... .+....... +.... +...++..+
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~-~~~v~l~~~d~~--~~~~~-~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l 173 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGK-GRRPLLVAADTQ--RPAAR-EQLRLLGEKVGVPVLEVMDGESPESIRRRVE 173 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHT-TCCEEEEECCSS--CHHHH-HHHHHHHHHHTCCEEECCTTCCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEecCCcc--cHhHH-HHHHHhcccCCeEEEEcCCCCCHHHHHHHHH
Confidence 3488899999999999999999999876 677887763211 10000 000000011 11111 111234566
Q ss_pred HHHHhcCCcEEEEcCC-CCHHhHH
Q 026207 98 EAVENHMPEVIIVDEI-GTEAEAH 120 (241)
Q Consensus 98 ~~~l~~~p~vlilDE~-~~~~d~~ 120 (241)
+.+...++|++|+|+| +...|..
T Consensus 174 ~~~~~~~~D~viiDtpp~~~~d~~ 197 (295)
T 1ls1_A 174 EKARLEARDLILVDTAGRLQIDEP 197 (295)
T ss_dssp HHHHHHTCCEEEEECCCCSSCCHH
T ss_pred HHHHhCCCCEEEEeCCCCccccHH
Confidence 6666689999999999 5555553
|
| >3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=4e-07 Score=87.99 Aligned_cols=70 Identities=26% Similarity=0.380 Sum_probs=51.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCcE
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEV 107 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~v 107 (241)
-+||+||||+|||+|+++++..+. ..++.++ ..++... .........+.++..+..+.|.+
T Consensus 240 GILL~GPPGTGKT~LAraiA~elg----~~~~~v~-~~~l~sk--------------~~gese~~lr~lF~~A~~~~PsI 300 (806)
T 3cf2_A 240 GILLYGPPGTGKTLIARAVANETG----AFFFLIN-GPEIMSK--------------LAGESESNLRKAFEEAEKNAPAI 300 (806)
T ss_dssp EEEEECCTTSCHHHHHHHHHTTTT----CEEEEEE-HHHHHSS--------------CTTHHHHHHHHHHHHHTTSCSEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC----CeEEEEE-hHHhhcc--------------cchHHHHHHHHHHHHHHHcCCeE
Confidence 589999999999999999998764 5667776 4443211 00111345677888898999999
Q ss_pred EEEcCCCCH
Q 026207 108 IIVDEIGTE 116 (241)
Q Consensus 108 lilDE~~~~ 116 (241)
|||||+-+.
T Consensus 301 IfIDEiDal 309 (806)
T 3cf2_A 301 IFIDELDAI 309 (806)
T ss_dssp EEEESGGGT
T ss_pred EEEehhccc
Confidence 999997543
|
| >2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=1.1e-06 Score=71.88 Aligned_cols=127 Identities=14% Similarity=0.136 Sum_probs=67.4
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccC-CCCCCccccccc-hhhcCCCCCcccHHHHHHHHHhcC
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIG-GDGDIPHSAIGT-ARRMQVPEPSLQHKVMIEAVENHM 104 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~ 104 (241)
.+.+++||.|+||||.+..++...... |.+|+++....... +...+... .+. .....+.+. ..+++.+ ..+
T Consensus 29 ~l~vitG~MgsGKTT~lL~~a~r~~~~-g~kVli~k~~~d~R~ge~~i~s~-~g~~~~a~~~~~~----~~~~~~~-~~~ 101 (214)
T 2j9r_A 29 WIEVICGSMFSGKSEELIRRVRRTQFA-KQHAIVFKPCIDNRYSEEDVVSH-NGLKVKAVPVSAS----KDIFKHI-TEE 101 (214)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHT-TCCEEEEECC------------------CCEEECSSG----GGGGGGC-CSS
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHC-CCEEEEEEeccCCcchHHHHHhh-cCCeeEEeecCCH----HHHHHHH-hcC
Confidence 488999999999999999998877544 67887775221110 01111110 011 000111110 1111111 125
Q ss_pred CcEEEEcCCCCH--HhHHHHHHHHhCCcEEEEeecCCChhhhhcCCccccccccccEEE
Q 026207 105 PEVIIVDEIGTE--AEAHACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVT 161 (241)
Q Consensus 105 p~vlilDE~~~~--~d~~~~~~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~ 161 (241)
.++|+|||++-. ...+.+....+.|+.||.+.+.++..+-.=. ....|+.-||.|.
T Consensus 102 ~dvViIDEaQF~~~~~V~~l~~l~~~~~~Vi~~Gl~~DF~~~~F~-~~~~Ll~~AD~Vt 159 (214)
T 2j9r_A 102 MDVIAIDEVQFFDGDIVEVVQVLANRGYRVIVAGLDQDFRGLPFG-QVPQLMAIAEHVT 159 (214)
T ss_dssp CCEEEECCGGGSCTTHHHHHHHHHHTTCEEEEEECSBCTTSCBCT-THHHHHHHCSEEE
T ss_pred CCEEEEECcccCCHHHHHHHHHHhhCCCEEEEEecccccccCccc-cHHHHHHhcccEE
Confidence 799999999864 2224444556679999999887774332211 2223333377766
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=98.27 E-value=3e-07 Score=78.83 Aligned_cols=68 Identities=10% Similarity=0.181 Sum_probs=43.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHH----Hhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAV----ENH 103 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~ 103 (241)
.++|+||||+|||+++++++..+. ..+++++ ..++... ..+. .....+..+..+ ...
T Consensus 38 ~lLl~GppGtGKT~la~aiA~~l~----~~~i~v~-~~~l~~~------~~g~--------~~~~i~~~f~~a~~~~~~~ 98 (293)
T 3t15_A 38 ILGIWGGKGQGKSFQCELVFRKMG----INPIMMS-AGELESG------NAGE--------PAKLIRQRYREAAEIIRKG 98 (293)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHT----CCCEEEE-HHHHHCC---------H--------HHHHHHHHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC----CCEEEEe-HHHhhhc------cCch--------hHHHHHHHHHHHHHHHhcC
Confidence 678899999999999999999873 4567776 3333111 0000 011222334333 356
Q ss_pred CCcEEEEcCCC
Q 026207 104 MPEVIIVDEIG 114 (241)
Q Consensus 104 ~p~vlilDE~~ 114 (241)
.|.+|+|||+.
T Consensus 99 ~~~vl~iDEiD 109 (293)
T 3t15_A 99 NMCCLFINDLD 109 (293)
T ss_dssp SCCCEEEECCC
T ss_pred CCeEEEEechh
Confidence 89999999994
|
| >1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=3.6e-06 Score=67.91 Aligned_cols=127 Identities=13% Similarity=0.052 Sum_probs=69.6
Q ss_pred eccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccC-CCCCCccccccch-hhcCCCCCcccHHHHHHHHHh
Q 026207 25 IFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIG-GDGDIPHSAIGTA-RRMQVPEPSLQHKVMIEAVEN 102 (241)
Q Consensus 25 ~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~ 102 (241)
...+.+++||.||||||.|...++..... +.+++++....+.. ......+ .+.. .-.... .... +.+. .
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~-~~kvl~~kp~~D~R~~~~i~S~--~g~~~~A~~~~-~~~d---~~~~--~ 89 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIA-QYKCLVIKYAKDTRYSSSFCTH--DRNTMEALPAC-LLRD---VAQE--A 89 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHT-TCCEEEEEETTCCCGGGSCCHH--HHHHSEEEEES-SGGG---GHHH--H
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHc-CCeEEEEccccCccchhhhhhc--cCCcccceecC-CHHH---HHHh--c
Confidence 34589999999999996666666655444 57888886221111 0111111 1100 000011 1111 1111 3
Q ss_pred cCCcEEEEcCCCCHHhH-HHHHHHHhCCcEEEEeecCCChhhhhcCCccccccccccEEE
Q 026207 103 HMPEVIIVDEIGTEAEA-HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVT 161 (241)
Q Consensus 103 ~~p~vlilDE~~~~~d~-~~~~~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~ 161 (241)
.+.|+|++||+|-..+. +.+..+.+.|+.||.+...++..+-.= |....|+.-+|.|.
T Consensus 90 ~~~DvIlIDEaQFfk~~ve~~~~L~~~gk~VI~~GL~~DF~~~~F-~~~~~Ll~~Ad~v~ 148 (195)
T 1w4r_A 90 LGVAVIGIDEGQFFPDIVEFCEAMANAGKTVIVAALDGTFQRKPF-GAILNLVPLAESVV 148 (195)
T ss_dssp HTCSEEEESSGGGCTTHHHHHHHHHHTTCEEEEEEESBCTTSSBC-TTGGGGGGGCSEEE
T ss_pred cCCCEEEEEchhhhHHHHHHHHHHHHCCCeEEEEecccccccccc-hhHHHHHHhcCeEE
Confidence 46899999999866322 233455688999999988887443321 23444444477766
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=3.7e-06 Score=71.76 Aligned_cols=37 Identities=30% Similarity=0.212 Sum_probs=28.2
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccC---CCeEEEEc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEF---QKRVVIVD 62 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~---g~~v~~i~ 62 (241)
...++|+||||+||||+++.++..+.... ...+++++
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~ 106 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVT 106 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEEC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEc
Confidence 34699999999999999999998875431 12566665
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=2.2e-07 Score=78.03 Aligned_cols=70 Identities=20% Similarity=0.253 Sum_probs=43.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCcE
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEV 107 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~v 107 (241)
-++|+||||+||||++++++.... ..+++++ ..++... ..+ ......+..+..+....|.+
T Consensus 46 ~vll~G~~GtGKT~la~~la~~~~----~~~~~v~-~~~~~~~------~~~--------~~~~~~~~~~~~a~~~~~~v 106 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGEAH----VPFFSMG-GSSFIEM------FVG--------LGASRVRDLFETAKKQAPSI 106 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHHHT----CCCCCCC-SCTTTTS------CSS--------SCSSSSSTTHHHHHHSCSCE
T ss_pred eEEEECCCCCcHHHHHHHHHHHhC----CCEEEec-hHHHHHh------hcc--------hHHHHHHHHHHHHHhcCCeE
Confidence 388999999999999999999764 2234333 2222110 000 01122334556666678999
Q ss_pred EEEcCCCCH
Q 026207 108 IIVDEIGTE 116 (241)
Q Consensus 108 lilDE~~~~ 116 (241)
|++||+...
T Consensus 107 l~iDEid~l 115 (268)
T 2r62_A 107 IFIDEIDAI 115 (268)
T ss_dssp EEESCGGGT
T ss_pred EEEeChhhh
Confidence 999999544
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.25 E-value=1.6e-06 Score=76.98 Aligned_cols=72 Identities=17% Similarity=0.302 Sum_probs=49.3
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCC
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMP 105 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p 105 (241)
...++|+||||+|||+++++++.... ..+++++ ..++... ..+ ......+..+..+...+|
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~~----~~~~~v~-~~~l~~~------~~g--------~~~~~~~~~~~~a~~~~~ 208 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAESN----ATFFNIS-AASLTSK------YVG--------EGEKLVRALFAVARELQP 208 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTT----CEEEEEC-SCCC---------------------CHHHHHHHHHHHHHSSS
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhc----CcEEEee-HHHhhcc------ccc--------hHHHHHHHHHHHHHhcCC
Confidence 35799999999999999999988753 5677777 4443211 000 112234556677777889
Q ss_pred cEEEEcCCCCH
Q 026207 106 EVIIVDEIGTE 116 (241)
Q Consensus 106 ~vlilDE~~~~ 116 (241)
.+|||||+...
T Consensus 209 ~il~iDEid~l 219 (389)
T 3vfd_A 209 SIIFIDQVDSL 219 (389)
T ss_dssp EEEEEETGGGG
T ss_pred eEEEEECchhh
Confidence 99999999644
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=98.24 E-value=8.1e-07 Score=77.53 Aligned_cols=35 Identities=29% Similarity=0.260 Sum_probs=29.6
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
.+++|+|||||||||+++.|++.+.+. +.+|.+..
T Consensus 130 ~vi~lvG~nGaGKTTll~~Lag~l~~~-~g~V~l~g 164 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTIAKLANWLKNH-GFSVVIAA 164 (328)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhc-CCEEEEEe
Confidence 389999999999999999999999887 44555554
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.24 E-value=1.2e-06 Score=77.18 Aligned_cols=71 Identities=23% Similarity=0.325 Sum_probs=48.4
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCC
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMP 105 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p 105 (241)
...++|+||||+||||++++++..+. ..++++. ..++... ..+ ......+..+..+...+|
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~~~----~~~~~i~-~~~l~~~------~~g--------~~~~~~~~~~~~a~~~~~ 177 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQSG----ATFFSIS-ASSLTSK------WVG--------EGEKMVRALFAVARCQQP 177 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHHTT----CEEEEEE-GGGGCCS------STT--------HHHHHHHHHHHHHHHTCS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcC----CeEEEEe-hHHhhcc------ccc--------hHHHHHHHHHHHHHhcCC
Confidence 34799999999999999999998763 5667776 3333211 000 012234456666677889
Q ss_pred cEEEEcCCCC
Q 026207 106 EVIIVDEIGT 115 (241)
Q Consensus 106 ~vlilDE~~~ 115 (241)
.+|||||+..
T Consensus 178 ~vl~iDEid~ 187 (357)
T 3d8b_A 178 AVIFIDEIDS 187 (357)
T ss_dssp EEEEEETHHH
T ss_pred eEEEEeCchh
Confidence 9999999843
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.22 E-value=3.6e-06 Score=65.72 Aligned_cols=36 Identities=28% Similarity=0.421 Sum_probs=27.8
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcccc------CCCeEEEEc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDE------FQKRVVIVD 62 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~------~g~~v~~i~ 62 (241)
..++|+||+|+||||+++.++..+... .+..+++++
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 85 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEEC
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEee
Confidence 468999999999999999999987531 134556555
|
| >2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=98.22 E-value=6.6e-06 Score=68.06 Aligned_cols=127 Identities=13% Similarity=0.039 Sum_probs=69.6
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccc-hhhcCCCCCcccHHHHHHHHHhcC
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGT-ARRMQVPEPSLQHKVMIEAVENHM 104 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~ 104 (241)
..+.+++||.|+||||.+...+...... |.+++.+....+......+... .+. .....+.+. ..+++.+ .+
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~-g~kvli~kp~~D~Ryg~~i~sr-~G~~~~a~~i~~~----~di~~~~--~~ 90 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIA-QYKCLVIKYAKDTRYSSSFCTH-DRNTMEALPACLL----RDVAQEA--LG 90 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTT-TCCEEEEEETTCCCC------------CEEEEESSG----GGGHHHH--TT
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHC-CCeEEEEeecCCccchHHHHhh-cCCeeEEEecCCH----HHHHHHh--cc
Confidence 3489999999999999888877766544 6777776511111000111111 111 001111111 1123322 56
Q ss_pred CcEEEEcCCCCHHhHHH-HHHHHhCCcEEEEeecCCChhhhhcCCccccccccccEEE
Q 026207 105 PEVIIVDEIGTEAEAHA-CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVT 161 (241)
Q Consensus 105 p~vlilDE~~~~~d~~~-~~~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~ 161 (241)
.|+|+|||++-..+... +..+.+.|+.||.+.+.++..+-.= +....|+.-+|.|.
T Consensus 91 ~dvViIDEaQF~~~v~el~~~l~~~gi~VI~~GL~~DF~~~~F-~~~~~Ll~~AD~Vt 147 (234)
T 2orv_A 91 VAVIGIDEGQFFPDIVEFCEAMANAGKTVIVAALDGTFQRKPF-GAILNLVPLAESVV 147 (234)
T ss_dssp CSEEEESSGGGCTTHHHHHHHHHHTTCEEEEECCSBCTTSSBC-TTGGGGGGGCSEEE
T ss_pred CCEEEEEchhhhhhHHHHHHHHHhCCCEEEEEecccccccCCc-ccHHHHHHhcccEE
Confidence 89999999986654432 3345668999999988877433221 13333433377766
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=98.20 E-value=9e-07 Score=81.01 Aligned_cols=86 Identities=22% Similarity=0.289 Sum_probs=49.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCcc-ccccchhhcCCCC------CcccHHHHHHHH
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPH-SAIGTARRMQVPE------PSLQHKVMIEAV 100 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~-~~~~~~~~~~~~~------~~~~~~~~~~~~ 100 (241)
+++|+||||||||||++.|++.+.+. +.+|.+.. ...... ....+ ...+....+.+.. ........+..+
T Consensus 295 VI~LVGpNGSGKTTLl~~LAgll~~~-~G~V~l~g-~D~~r~-aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~a 371 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIGKLARQFEQQ-GKSVMLAA-GDTFRA-AAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAA 371 (503)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEC-CCTTCH-HHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHHH
T ss_pred EEEEECCCcccHHHHHHHHHHHhhhc-CCeEEEec-Ccccch-hhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHHH
Confidence 89999999999999999999999877 44555543 221100 00000 0000001111111 122344455556
Q ss_pred HhcCCcEEEEcCCCCH
Q 026207 101 ENHMPEVIIVDEIGTE 116 (241)
Q Consensus 101 l~~~p~vlilDE~~~~ 116 (241)
...+.|++|+|-++..
T Consensus 372 ~~~~~DvVLIDTaGrl 387 (503)
T 2yhs_A 372 KARNIDVLIADTAGRL 387 (503)
T ss_dssp HHTTCSEEEECCCCSC
T ss_pred HhcCCCEEEEeCCCcc
Confidence 6678899999988763
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=3.1e-06 Score=73.52 Aligned_cols=32 Identities=9% Similarity=0.092 Sum_probs=25.8
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
.+++|.||||+|||||+.+++.. . |.+++|++
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~--~--G~~VlyIs 155 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA--L--GGKDKYAT 155 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH--H--HTTSCCEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh--C--CCCEEEEE
Confidence 36899999999999999999886 2 34556665
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=98.19 E-value=2.1e-06 Score=66.38 Aligned_cols=68 Identities=16% Similarity=0.081 Sum_probs=51.3
Q ss_pred hcCCCCCcccHHHHHH------HHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCc
Q 026207 83 RMQVPEPSLQHKVMIE------AVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPI 149 (241)
Q Consensus 83 ~~~~~~~~~~~~~~~~------~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~ 149 (241)
....+|+|++++..++ +++..+|+++++|||++++|+.... .....|.++++++|...
T Consensus 54 ~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~--------- 124 (148)
T 1f2t_B 54 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE--------- 124 (148)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG---------
T ss_pred ChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH---------
Confidence 3456788999998775 6778899999999999999995433 22345789999999863
Q ss_pred cccccccccEEEe
Q 026207 150 LSDLIGGVDTVTL 162 (241)
Q Consensus 150 l~~l~~~~d~V~~ 162 (241)
+..+ ||+++.
T Consensus 125 ~~~~---~d~ii~ 134 (148)
T 1f2t_B 125 LKDA---ADHVIR 134 (148)
T ss_dssp GGGG---CSEEEE
T ss_pred HHHh---CCEEEE
Confidence 3345 777765
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.19 E-value=6.3e-07 Score=82.45 Aligned_cols=71 Identities=24% Similarity=0.355 Sum_probs=44.4
Q ss_pred eeccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhc
Q 026207 24 IIFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENH 103 (241)
Q Consensus 24 ~~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 103 (241)
.+.| ++|+||||+|||||++++++... ...++++ ..++... ..+. .....+..++.+...
T Consensus 63 ip~G-vLL~GppGtGKTtLaraIa~~~~----~~~i~i~-g~~~~~~------~~g~--------~~~~v~~lfq~a~~~ 122 (499)
T 2dhr_A 63 IPKG-VLLVGPPGVGKTHLARAVAGEAR----VPFITAS-GSDFVEM------FVGV--------GAARVRDLFETAKRH 122 (499)
T ss_dssp CCSE-EEEECSSSSSHHHHHHHHHHHTT----CCEEEEE-GGGGTSS------CTTH--------HHHHHHHHTTTSSSS
T ss_pred CCce-EEEECCCCCCHHHHHHHHHHHhC----CCEEEEe-hhHHHHh------hhhh--------HHHHHHHHHHHHHhc
Confidence 3445 89999999999999999999874 3457776 4443211 0000 011122333333345
Q ss_pred CCcEEEEcCCC
Q 026207 104 MPEVIIVDEIG 114 (241)
Q Consensus 104 ~p~vlilDE~~ 114 (241)
.|.++++||+.
T Consensus 123 ~p~il~IDEId 133 (499)
T 2dhr_A 123 APCIVFIDEID 133 (499)
T ss_dssp SSCEEEEECGG
T ss_pred CCCEEEEehHH
Confidence 68999999984
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.19 E-value=2.7e-07 Score=83.11 Aligned_cols=35 Identities=14% Similarity=0.131 Sum_probs=27.1
Q ss_pred eeCcceeeccE---EEEEeCCCchHHHHHHHHHHhccc
Q 026207 18 LYSINKIIFDF---FLSYFRPGVGKTTVMREIARVLSD 52 (241)
Q Consensus 18 ~~~~~~~~~g~---vll~Gp~GsGKTTLl~~l~~~l~~ 52 (241)
.++......++ ++|+||||+|||||++.+++...+
T Consensus 20 ~y~~~~vl~~vsf~I~lvG~sGaGKSTLln~L~g~~~~ 57 (418)
T 2qag_C 20 QVYRKSVKRGFEFTLMVVGESGLGKSTLINSLFLTDLY 57 (418)
T ss_dssp CTTTTTCC-CCCEEEEEECCTTSSHHHHHHHHTTCCCC
T ss_pred eECCEEEecCCCEEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 34444555664 799999999999999999998753
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=98.15 E-value=7.4e-07 Score=77.85 Aligned_cols=37 Identities=24% Similarity=0.359 Sum_probs=29.9
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccC--CCeEEEEc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEF--QKRVVIVD 62 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~--g~~v~~i~ 62 (241)
...++|+||||+|||||++.+++.+.+.. +..+++++
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~ 83 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN 83 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 34799999999999999999999876532 35677776
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=98.15 E-value=1.3e-06 Score=68.20 Aligned_cols=28 Identities=21% Similarity=0.204 Sum_probs=25.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK 56 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~ 56 (241)
+++|.||||||||||++.+++.+ +..|.
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l-~~~G~ 62 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI-GHQGN 62 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT-TCCSC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC-CCCCe
Confidence 89999999999999999999999 66443
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=1.3e-06 Score=73.60 Aligned_cols=71 Identities=17% Similarity=0.151 Sum_probs=44.9
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPE 106 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~ 106 (241)
..++|+||||+||||++++++.... ..++.+..+.++.+.. .. ......+..+..+...++.
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~~~----~~~~~i~~~~~~~g~~-----~~---------~~~~~~~~~~~~~~~~~~~ 126 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEESN----FPFIKICSPDKMIGFS-----ET---------AKCQAMKKIFDDAYKSQLS 126 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT----CSEEEEECGGGCTTCC-----HH---------HHHHHHHHHHHHHHTSSEE
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhC----CCEEEEeCHHHhcCCc-----hH---------HHHHHHHHHHHHHHhcCCc
Confidence 4799999999999999999999743 4556665333221100 00 0011233445555556789
Q ss_pred EEEEcCCCC
Q 026207 107 VIIVDEIGT 115 (241)
Q Consensus 107 vlilDE~~~ 115 (241)
+|+|||+..
T Consensus 127 vl~iDEid~ 135 (272)
T 1d2n_A 127 CVVVDDIER 135 (272)
T ss_dssp EEEECCHHH
T ss_pred EEEEEChhh
Confidence 999999754
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=2.1e-06 Score=73.28 Aligned_cols=37 Identities=30% Similarity=0.421 Sum_probs=29.9
Q ss_pred eccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 25 IFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 25 ~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
+.+.++|+||||+||||++++++..+... +..+++++
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~~~~-~~~~~~~~ 82 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATLFDT-EEAMIRID 82 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHHHSC-GGGEEEEE
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHHcCC-CcceEEee
Confidence 34689999999999999999999988654 34566666
|
| >3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=1.6e-06 Score=83.90 Aligned_cols=70 Identities=21% Similarity=0.279 Sum_probs=51.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCcE
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEV 107 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~v 107 (241)
-+||+||||||||.+.++++.... ..++.+. ..++... .+...+...+.++..+....|.+
T Consensus 513 gvLl~GPPGtGKT~lAkaiA~e~~----~~f~~v~-~~~l~s~--------------~vGese~~vr~lF~~Ar~~~P~I 573 (806)
T 3cf2_A 513 GVLFYGPPGCGKTLLAKAIANECQ----ANFISIK-GPELLTM--------------WFGESEANVREIFDKARQAAPCV 573 (806)
T ss_dssp CCEEESSTTSSHHHHHHHHHHTTT----CEEEECC-HHHHHTT--------------TCSSCHHHHHHHHHHHHTTCSEE
T ss_pred eEEEecCCCCCchHHHHHHHHHhC----CceEEec-cchhhcc--------------ccchHHHHHHHHHHHHHHcCCce
Confidence 489999999999999999999874 4556665 4443111 11122456778899999999999
Q ss_pred EEEcCCCCH
Q 026207 108 IIVDEIGTE 116 (241)
Q Consensus 108 lilDE~~~~ 116 (241)
|++||+.+.
T Consensus 574 ifiDEiDsl 582 (806)
T 3cf2_A 574 LFFDELDSI 582 (806)
T ss_dssp EECSCGGGC
T ss_pred eechhhhHH
Confidence 999998643
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=98.09 E-value=1.7e-06 Score=70.03 Aligned_cols=30 Identities=20% Similarity=0.215 Sum_probs=24.0
Q ss_pred ceeecc-EEEEEeCCCchHHHHHHHHHHhcc
Q 026207 22 NKIIFD-FFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 22 ~~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
..+..| ++.|+||||||||||++.|++.++
T Consensus 15 ~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 15 QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 345555 899999999999999999999984
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.09 E-value=1.6e-06 Score=68.42 Aligned_cols=44 Identities=23% Similarity=0.076 Sum_probs=31.9
Q ss_pred EEEEEeEEee-Ccc--eeeccEEEEEeCCCchHHHHHHHHHHhcccc
Q 026207 10 LIVKFFYALY-SIN--KIIFDFFLSYFRPGVGKTTVMREIARVLSDE 53 (241)
Q Consensus 10 ~~~r~~~~~~-~~~--~~~~g~vll~Gp~GsGKTTLl~~l~~~l~~~ 53 (241)
+.++.+...- ... ....++++|+|||||||||++.+|...+.+.
T Consensus 7 l~i~nf~~~~~~~~~~~~~~g~~~i~G~NGsGKStll~ai~~~l~~~ 53 (182)
T 3kta_A 7 LELKGFKSYGNKKVVIPFSKGFTAIVGANGSGKSNIGDAILFVLGGL 53 (182)
T ss_dssp EEEESBGGGCSSCEEEECCSSEEEEEECTTSSHHHHHHHHHHHTTCC
T ss_pred EEEeCeEeecCccEEEecCCCcEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 3466664321 332 3445699999999999999999999987644
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=98.07 E-value=1.2e-05 Score=69.87 Aligned_cols=35 Identities=26% Similarity=0.375 Sum_probs=31.2
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
.+++++||||+||||++..+++.+.+. +.+|+.++
T Consensus 106 ~vI~ivG~~G~GKTT~~~~LA~~l~~~-g~kVllid 140 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSLAKMANYYAEL-GYKVLIAA 140 (320)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEe
Confidence 489999999999999999999999876 67888876
|
| >2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=1.8e-06 Score=78.51 Aligned_cols=71 Identities=17% Similarity=0.105 Sum_probs=47.7
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHH---Hhc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAV---ENH 103 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~ 103 (241)
.-++|+||||+|||+++++++..+... ..++.++ ..++... ..+ ........+..+ ...
T Consensus 64 ~~iLl~GppGtGKT~la~ala~~l~~~--~~~~~~~-~~~~~~~------~~~---------~~~~~~~~f~~a~~~~~~ 125 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALALAIAQELGSK--VPFCPMV-GSEVYST------EIK---------KTEVLMENFRRAIGLRIK 125 (456)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCTT--SCEEEEE-GGGGCCS------SSC---------HHHHHHHHHHHTEEEEEE
T ss_pred CeEEEECCCcCCHHHHHHHHHHHhCCC--ceEEEEe-HHHHHHH------hhh---------hhHHHHHHHHHHHhhhhc
Confidence 369999999999999999999998643 4567766 4443211 000 011234455555 556
Q ss_pred CCcEEEEcCCCC
Q 026207 104 MPEVIIVDEIGT 115 (241)
Q Consensus 104 ~p~vlilDE~~~ 115 (241)
.|.+||+||+.+
T Consensus 126 ~~~il~iDEid~ 137 (456)
T 2c9o_A 126 ETKEVYEGEVTE 137 (456)
T ss_dssp EEEEEEEEEEEE
T ss_pred CCcEEEEechhh
Confidence 799999999843
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=98.06 E-value=5.8e-06 Score=72.22 Aligned_cols=37 Identities=30% Similarity=0.293 Sum_probs=29.1
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhcccc-----CCCeEEEEc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDE-----FQKRVVIVD 62 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~-----~g~~v~~i~ 62 (241)
...++|+||||+||||+++.++..+... .+..+++++
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~ 85 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVN 85 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEE
Confidence 3479999999999999999999987442 135667776
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=98.04 E-value=1.6e-06 Score=78.29 Aligned_cols=86 Identities=17% Similarity=0.145 Sum_probs=51.3
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCC--CC--Cccc----HHHHH
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQV--PE--PSLQ----HKVMI 97 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~--~~--~~~~----~~~~~ 97 (241)
..+++++||||+||||++..|+..+.+. |.+|.+++... ... .. ..+......+..+ .. .+.. ....+
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~-G~kVllv~~D~-~r~-~a-~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al 172 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKR-GYKVGLVAADV-YRP-AA-YDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGV 172 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHT-TCCEEEEEECC-SCH-HH-HHHHHHHHHTTTCCEECCTTCSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEecCc-cch-hH-HHHHHHHHHhcCCceeeccccCCHHHHHHHHH
Confidence 3489999999999999999999999776 77888776221 100 00 0000000011111 11 1112 23345
Q ss_pred HHHHhcCCcEEEEcCCCC
Q 026207 98 EAVENHMPEVIIVDEIGT 115 (241)
Q Consensus 98 ~~~l~~~p~vlilDE~~~ 115 (241)
+.+...++|++|+|+++.
T Consensus 173 ~~a~~~~~DvvIIDTaGr 190 (433)
T 3kl4_A 173 DIFVKNKMDIIIVDTAGR 190 (433)
T ss_dssp HHTTTTTCSEEEEEECCC
T ss_pred HHHHhcCCCEEEEECCCC
Confidence 555567899999999985
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.04 E-value=1.5e-05 Score=83.25 Aligned_cols=106 Identities=18% Similarity=0.186 Sum_probs=68.3
Q ss_pred eccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCC------CcccHHHHHH
Q 026207 25 IFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPE------PSLQHKVMIE 98 (241)
Q Consensus 25 ~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 98 (241)
+..+++|.|+||+|||||+.+++...... +.+++|++ .++.... .. +.++.... .......+++
T Consensus 731 ~G~lilIaG~PG~GKTtLalqlA~~~a~~-g~~VlyiS-~Ees~~q------l~--A~rlG~~~~~l~i~~~~~i~~i~~ 800 (2050)
T 3cmu_A 731 MGRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFID-AEHALDP------IY--ARKLGVDIDNLLCSQPDTGEQALE 800 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEEC-TTSCCCH------HH--HHHTTCCTTTCEEECCSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc-CCcEEEEE-CCCcHHH------HH--HHHcCCCccceEEecCCCHHHHHH
Confidence 33489999999999999999999988654 56899998 6554321 11 11222111 1233444444
Q ss_pred HHHh----cCCcEEEEcCCCCHHh----------------HHHH--------HHHHhCCcEEEEeecCCC
Q 026207 99 AVEN----HMPEVIIVDEIGTEAE----------------AHAC--------RSIAERGVMLIGTAHGEW 140 (241)
Q Consensus 99 ~~l~----~~p~vlilDE~~~~~d----------------~~~~--------~~~~~~g~~vi~t~H~~~ 140 (241)
.+.. ..|+++|+|+++.... .+.+ ..+++.+++||++.|.+.
T Consensus 801 ~~r~l~~~~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI~l~Qv~r 870 (2050)
T 3cmu_A 801 ICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRM 870 (2050)
T ss_dssp HHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEE
T ss_pred HHHHHhhccCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCEEEEeccccc
Confidence 3332 6899999999764432 1111 135568999999999875
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=98.03 E-value=2.7e-06 Score=68.90 Aligned_cols=36 Identities=25% Similarity=0.264 Sum_probs=29.0
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
..++.|+||||||||||++.|++.+.+. |..+.++.
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g~~~g~v~ 57 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAALSAQ-GLPAEVVP 57 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhc-CCceEEEe
Confidence 3489999999999999999999999764 43445554
|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=3.1e-06 Score=77.67 Aligned_cols=67 Identities=28% Similarity=0.445 Sum_probs=47.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCcE
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEV 107 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~v 107 (241)
-+||+||||+|||+++++++.... ..+++++ ..++... ..+ ......+..+..+....|.+
T Consensus 240 ~vLL~GppGtGKT~lAraia~~~~----~~fv~vn-~~~l~~~------~~g--------~~~~~~~~~f~~A~~~~p~i 300 (489)
T 3hu3_A 240 GILLYGPPGTGKTLIARAVANETG----AFFFLIN-GPEIMSK------LAG--------ESESNLRKAFEEAEKNAPAI 300 (489)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCS----SEEEEEE-HHHHHTS------CTT--------HHHHHHHHHHHHHHHTCSEE
T ss_pred cEEEECcCCCCHHHHHHHHHHHhC----CCEEEEE-chHhhhh------hcc--------hhHHHHHHHHHHHHhcCCcE
Confidence 599999999999999999998763 5677776 3333111 000 01223456677788888999
Q ss_pred EEEcCC
Q 026207 108 IIVDEI 113 (241)
Q Consensus 108 lilDE~ 113 (241)
|||||+
T Consensus 301 LfLDEI 306 (489)
T 3hu3_A 301 IFIDEL 306 (489)
T ss_dssp EEEESH
T ss_pred EEecch
Confidence 999998
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=98.02 E-value=4e-06 Score=72.40 Aligned_cols=36 Identities=19% Similarity=0.272 Sum_probs=30.3
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhcc-ccCCCeEEEEc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLS-DEFQKRVVIVD 62 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~-~~~g~~v~~i~ 62 (241)
...++|+||||+|||+|+.+++..+. .. +.++.++.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~-g~~v~~~~ 188 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKK-GVSTTLLH 188 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHS-CCCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhc-CCcEEEEE
Confidence 35789999999999999999999886 44 67777776
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.00 E-value=3.4e-06 Score=65.86 Aligned_cols=27 Identities=26% Similarity=0.320 Sum_probs=23.5
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSD 52 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~ 52 (241)
...++|+||+|+||||+++.++..+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 346899999999999999999998754
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.00 E-value=3.2e-06 Score=67.69 Aligned_cols=25 Identities=28% Similarity=0.626 Sum_probs=23.0
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
.+++|+|||||||||+++.|++..+
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4899999999999999999999864
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=97.98 E-value=6.7e-06 Score=76.40 Aligned_cols=27 Identities=33% Similarity=0.406 Sum_probs=24.2
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSD 52 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~ 52 (241)
...++|+||||+||||+++++++.+.+
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~~l~~ 134 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAKSLGR 134 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 448999999999999999999998853
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.94 E-value=2.4e-05 Score=62.37 Aligned_cols=24 Identities=38% Similarity=0.380 Sum_probs=21.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
.++|+||+|+||||+++.++..+.
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLF 63 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh
Confidence 499999999999999999998763
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=97.94 E-value=8.9e-06 Score=73.57 Aligned_cols=86 Identities=22% Similarity=0.248 Sum_probs=51.9
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCC--C--CCccc----HHHHHH
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQV--P--EPSLQ----HKVMIE 98 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~--~--~~~~~----~~~~~~ 98 (241)
.+++++|+||+||||++..|+..+... |.+|+.++... ... .. ..+......+..+ . ..+.. .+..++
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l~~~-G~kVllv~~D~-~R~-aa-~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~ 176 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYFQKR-GYKVGVVCSDT-WRP-GA-YHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVD 176 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEEECCC-SST-HH-HHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHHHHHHC-CCeEEEEeCCC-cch-hH-HHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHH
Confidence 489999999999999999999988765 78888887221 110 00 0000000011111 1 11112 234555
Q ss_pred HHHhcCCcEEEEcCCCCH
Q 026207 99 AVENHMPEVIIVDEIGTE 116 (241)
Q Consensus 99 ~~l~~~p~vlilDE~~~~ 116 (241)
.+...++|++|+|.++..
T Consensus 177 ~a~~~~~DvVIIDTaGrl 194 (443)
T 3dm5_A 177 YFKSKGVDIIIVDTAGRH 194 (443)
T ss_dssp HHHHTTCSEEEEECCCCS
T ss_pred HHHhCCCCEEEEECCCcc
Confidence 666678999999998743
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=2.4e-05 Score=68.32 Aligned_cols=34 Identities=24% Similarity=0.276 Sum_probs=28.3
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEE
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIV 61 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i 61 (241)
.++.|+||||||||||++.+++.+.+.. .++.++
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~g~~~~~~-g~v~i~ 89 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALGSLLTAAG-HKVAVL 89 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTT-CCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhhhCC-CEEEEE
Confidence 4899999999999999999999988763 445444
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=5.8e-06 Score=67.95 Aligned_cols=29 Identities=10% Similarity=0.321 Sum_probs=24.6
Q ss_pred eecc-EEEEEeCCCchHHHHHHHHHHhccc
Q 026207 24 IIFD-FFLSYFRPGVGKTTVMREIARVLSD 52 (241)
Q Consensus 24 ~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~ 52 (241)
...| +++|+||||||||||++.|++..++
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p 42 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQPL 42 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSCT
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCCC
Confidence 3344 8999999999999999999999874
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.90 E-value=8.9e-06 Score=62.07 Aligned_cols=33 Identities=24% Similarity=0.261 Sum_probs=25.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
-++|+||||+|||++++.+....... +..++ ++
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~~~~~-~~~~v-~~ 58 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQFGRNA-QGEFV-YR 58 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHSSTTT-TSCCE-EE
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCcc-CCCEE-EE
Confidence 58999999999999999999876543 33444 54
|
| >3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.90 E-value=4.2e-05 Score=69.37 Aligned_cols=25 Identities=36% Similarity=0.484 Sum_probs=22.8
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
..++|+||||+||||+++.++....
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhC
Confidence 3699999999999999999999874
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=1e-05 Score=73.97 Aligned_cols=30 Identities=20% Similarity=0.113 Sum_probs=27.4
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCC
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQK 56 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~ 56 (241)
.++.|+||||||||||+++|++.+.++.|.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~ 59 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALIPDLTL 59 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHCCCTTT
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCCCCCCE
Confidence 799999999999999999999999887554
|
| >3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* | Back alignment and structure |
|---|
Probab=97.89 E-value=3.7e-05 Score=66.07 Aligned_cols=32 Identities=28% Similarity=0.496 Sum_probs=26.9
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
..+++.||||+||||++++++..+. ..+++++
T Consensus 49 ~~~L~~G~~G~GKT~la~~la~~l~----~~~~~i~ 80 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKALCHDVN----ADMMFVN 80 (324)
T ss_dssp SEEEECSSTTSSHHHHHHHHHHHTT----EEEEEEE
T ss_pred eEEEeeCcCCCCHHHHHHHHHHHhC----CCEEEEc
Confidence 4788999999999999999998874 4567776
|
| >3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.89 E-value=2.4e-05 Score=75.26 Aligned_cols=73 Identities=21% Similarity=0.280 Sum_probs=47.0
Q ss_pred eeccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhc
Q 026207 24 IIFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENH 103 (241)
Q Consensus 24 ~~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 103 (241)
.+.+.++|+||||+|||+++++++..+... +..+++++ ..++...... +.+ .....+...
T Consensus 519 ~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~-~~~~i~i~-~s~~~~~~~~--------------~~~----~l~~~~~~~ 578 (758)
T 3pxi_A 519 RPIGSFIFLGPTGVGKTELARALAESIFGD-EESMIRID-MSEYMEKHST--------------SGG----QLTEKVRRK 578 (758)
T ss_dssp SCSEEEEEESCTTSSHHHHHHHHHHHHHSC-TTCEEEEE-GGGGCSSCCC--------------C-------CHHHHHHC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhcCC-CcceEEEe-chhccccccc--------------ccc----hhhHHHHhC
Confidence 344579999999999999999999987433 46778887 4444221100 011 112233345
Q ss_pred CCcEEEEcCCCCH
Q 026207 104 MPEVIIVDEIGTE 116 (241)
Q Consensus 104 ~p~vlilDE~~~~ 116 (241)
.+.++++||+...
T Consensus 579 ~~~vl~lDEi~~~ 591 (758)
T 3pxi_A 579 PYSVVLLDAIEKA 591 (758)
T ss_dssp SSSEEEEECGGGS
T ss_pred CCeEEEEeCcccc
Confidence 6689999999644
|
| >1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.88 E-value=1.3e-05 Score=73.84 Aligned_cols=33 Identities=30% Similarity=0.429 Sum_probs=28.5
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
...++|+||||+||||++++++..+ +..+++++
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l----~~~~i~in 109 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQEL----GYDILEQN 109 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT----TCEEEEEC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc----CCCEEEEe
Confidence 3589999999999999999999987 35777776
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=97.87 E-value=6.2e-06 Score=65.33 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=21.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHh
Q 026207 28 FFLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~ 49 (241)
+++|+|||||||||+++.|++.
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7999999999999999999997
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=97.87 E-value=1.5e-05 Score=69.64 Aligned_cols=34 Identities=24% Similarity=0.345 Sum_probs=27.1
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
..++|+||||+||||+++.++..+... ...+.+.
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~l~~~--~~~~~~~ 104 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQALGPD--TPFTAIA 104 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHCSS--CCEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhccc--CCccccc
Confidence 379999999999999999999988643 3444444
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.87 E-value=1.2e-05 Score=70.38 Aligned_cols=36 Identities=22% Similarity=0.156 Sum_probs=29.0
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcccc------C-CCeEEEEc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDE------F-QKRVVIVD 62 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~------~-g~~v~~i~ 62 (241)
..++|+||||+||||+++.++..+... . +..+++++
T Consensus 46 ~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~ 88 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN 88 (384)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE
Confidence 479999999999999999999987332 1 46777776
|
| >3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=97.87 E-value=4.8e-05 Score=65.69 Aligned_cols=31 Identities=26% Similarity=0.250 Sum_probs=25.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
.++|+||||+||||+++.++.... ..++.+.
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~~~----~~~~~~~ 87 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYEMS----ANIKTTA 87 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHTT----CCEEEEE
T ss_pred eEEEECcCCCCHHHHHHHHHHHhC----CCeEEec
Confidence 689999999999999999988764 3445554
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.86 E-value=8.2e-06 Score=64.56 Aligned_cols=26 Identities=12% Similarity=0.120 Sum_probs=23.6
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhcc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
..+++|+||||||||||++.|++..+
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 34899999999999999999999875
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=9.1e-06 Score=65.28 Aligned_cols=35 Identities=23% Similarity=0.203 Sum_probs=28.8
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
.++.|.|||||||||+++.|++.+. ..|..+++++
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d 60 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILD 60 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEec
Confidence 3899999999999999999999987 4355445666
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=7.6e-06 Score=65.98 Aligned_cols=32 Identities=28% Similarity=0.294 Sum_probs=26.6
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
.++.|+|||||||||+++.|++.+.+ ++.+++
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~~~----~i~~v~ 38 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTLGE----RVALLP 38 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHGG----GEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCC----CeEEEe
Confidence 37999999999999999999998764 345555
|
| >1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.84 E-value=6.8e-05 Score=65.99 Aligned_cols=33 Identities=27% Similarity=0.279 Sum_probs=27.1
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
...++|+||||+||||+++.++..+. ..++.++
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~----~~~~~~~ 104 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLD----IPIAISD 104 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT----CCEEEEE
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC----CCEEEec
Confidence 44699999999999999999999873 4556665
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.84 E-value=6.7e-06 Score=66.23 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=22.9
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
..++|+||||||||||++.|++.++
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4789999999999999999999875
|
| >3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.84 E-value=1.9e-05 Score=64.71 Aligned_cols=108 Identities=12% Similarity=0.027 Sum_probs=53.2
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccC-CCCCCccccccch-hhcCCCCCcccHHHHHHHHHhc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIG-GDGDIPHSAIGTA-RRMQVPEPSLQHKVMIEAVENH 103 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~ 103 (241)
..+.+++||.||||||.+...+...... +.+++.+....+-. ....+.. ..+.. .-..+.+. ..++.. +..
T Consensus 28 G~I~vitG~M~sGKTT~Llr~~~r~~~~-g~kvli~kp~~D~R~~~~~I~S-r~G~~~~a~~v~~~----~di~~~-i~~ 100 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRRLRRGIYA-KQKVVVFKPAIDDRYHKEKVVS-HNGNAIEAINISKA----SEIMTH-DLT 100 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHT-TCCEEEEEEC-----------C-BTTBCCEEEEESSG----GGGGGS-CCT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHc-CCceEEEEeccCCcchhhhHHH-hcCCceeeEEeCCH----HHHHHH-Hhc
Confidence 3489999999999999554444444333 56666654111111 1110000 01100 00000000 011111 135
Q ss_pred CCcEEEEcCCCCHHh--HHHHHHHHhCCcEEEEeecCCC
Q 026207 104 MPEVIIVDEIGTEAE--AHACRSIAERGVMLIGTAHGEW 140 (241)
Q Consensus 104 ~p~vlilDE~~~~~d--~~~~~~~~~~g~~vi~t~H~~~ 140 (241)
++++|++||.|-..+ .+.+....+.|+.|+...=.++
T Consensus 101 ~~dvV~IDEaQFf~~~~v~~l~~la~~gi~Vi~~GLd~D 139 (219)
T 3e2i_A 101 NVDVIGIDEVQFFDDEIVSIVEKLSADGHRVIVAGLDMD 139 (219)
T ss_dssp TCSEEEECCGGGSCTHHHHHHHHHHHTTCEEEEEEESBC
T ss_pred CCCEEEEechhcCCHHHHHHHHHHHHCCCEEEEeecccc
Confidence 789999999985532 2344455578999888544444
|
| >1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=3e-05 Score=62.55 Aligned_cols=39 Identities=23% Similarity=0.176 Sum_probs=31.9
Q ss_pred eeeccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 23 KIIFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 23 ~~~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
....|.+++.++||.||||....++-..... |.+|.++.
T Consensus 25 ~~~~g~i~v~tG~GkGKTTaA~GlalRA~g~-G~rV~~vQ 63 (196)
T 1g5t_A 25 QEERGIIIVFTGNGKGKTTAAFGTAARAVGH-GKNVGVVQ 63 (196)
T ss_dssp --CCCCEEEEESSSSCHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred cccCceEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEE
Confidence 4467899999999999999999888777655 78998884
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=97.82 E-value=1.2e-05 Score=61.26 Aligned_cols=23 Identities=17% Similarity=-0.086 Sum_probs=20.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++|+||||+|||++++.++...
T Consensus 29 ~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGCCTT
T ss_pred cEEEECCCCccHHHHHHHHHHhC
Confidence 58999999999999999887754
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.81 E-value=1e-06 Score=72.94 Aligned_cols=30 Identities=20% Similarity=0.122 Sum_probs=27.2
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCC
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQK 56 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~ 56 (241)
++++|+||||||||||+++|++.+.++.|.
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~~~~~G~ 57 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTALIPDLTL 57 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHHSCCTTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcccccCCCe
Confidence 688999999999999999999999888554
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.81 E-value=9.6e-06 Score=63.16 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=22.7
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
.+++|+|||||||||+++.|++.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999999874
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.80 E-value=9.2e-06 Score=66.45 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=23.0
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
.+++|+||||||||||++.|++..+
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~p 48 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEFP 48 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3899999999999999999999883
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=2.3e-05 Score=66.48 Aligned_cols=32 Identities=28% Similarity=0.411 Sum_probs=26.8
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
..++|+||||+||||+++.++..+. ..+++++
T Consensus 51 ~~vll~G~~GtGKT~la~~la~~l~----~~~~~i~ 82 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAKLAN----APFIKVE 82 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT----CCEEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC----CCEEEEc
Confidence 4689999999999999999999873 3556666
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=97.76 E-value=1.3e-05 Score=63.55 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=20.8
Q ss_pred cEEEEEeCCCchHHHHHHHHHHh
Q 026207 27 DFFLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~ 49 (241)
.+++|+|||||||||+++.|++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcc
Confidence 36899999999999999999974
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=97.76 E-value=1.2e-05 Score=64.57 Aligned_cols=24 Identities=25% Similarity=0.253 Sum_probs=22.5
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
.+++|+|||||||||+++.|++.+
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh
Confidence 489999999999999999999987
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=2e-05 Score=67.88 Aligned_cols=34 Identities=29% Similarity=0.316 Sum_probs=27.4
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcc--ccCCCeEEEE
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLS--DEFQKRVVIV 61 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~--~~~g~~v~~i 61 (241)
.++.|+||||||||||++.|++.+. +..| .+.++
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G-~i~vi 116 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLSRWPEHR-RVELI 116 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHTTSTTCC-CEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhCCCCC-eEEEE
Confidence 3899999999999999999999886 5534 34444
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.74 E-value=1.5e-05 Score=64.49 Aligned_cols=27 Identities=22% Similarity=0.097 Sum_probs=24.2
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSD 52 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~ 52 (241)
..+++|+|||||||||+++.|++.+++
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 348999999999999999999998864
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.74 E-value=5.2e-06 Score=66.57 Aligned_cols=47 Identities=9% Similarity=-0.041 Sum_probs=26.3
Q ss_pred CccccceeeEEEEEeEEeeCcceeecc-EEEEEeCCCchHHHHHHHHHHhc
Q 026207 1 MLRLRNVFLLIVKFFYALYSINKIIFD-FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~~~~~g-~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
||+++|+.... -...+.......+ .++|+|+||||||||++.+++..
T Consensus 3 ~l~~~~~~~~~---~~~~l~~~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 3 NLNYQQTHFVM---SAPDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp --------CEE---EESSGGGSSCSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred chhhhhhhhee---ecCCHhHCCCCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 47778876322 1123333444444 59999999999999999998865
|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.73 E-value=1.7e-05 Score=68.79 Aligned_cols=37 Identities=11% Similarity=0.053 Sum_probs=29.1
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccC------CCeEEEEc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEF------QKRVVIVD 62 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~------g~~v~~i~ 62 (241)
.+.++|+||||+|||++++.++..+.... ...++++.
T Consensus 45 ~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~IN 87 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHID 87 (318)
T ss_dssp CCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEe
Confidence 34799999999999999999999885321 23567776
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.73 E-value=1.6e-05 Score=63.53 Aligned_cols=26 Identities=31% Similarity=0.263 Sum_probs=23.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDE 53 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~ 53 (241)
+++|+|||||||||+++.|++.+.+.
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~~~~~ 33 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFEDPSTS 33 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHCTTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 89999999999999999999988443
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=7.9e-06 Score=71.76 Aligned_cols=31 Identities=23% Similarity=0.214 Sum_probs=27.1
Q ss_pred eeecc-EEEEEeCCCchHHHHHHHHHHhcccc
Q 026207 23 KIIFD-FFLSYFRPGVGKTTVMREIARVLSDE 53 (241)
Q Consensus 23 ~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~ 53 (241)
.+..| .++|+||||||||||+++|++...++
T Consensus 67 ~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 67 TCGIGQRIGIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp CEETTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred eecCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 34444 89999999999999999999999877
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=97.71 E-value=1.1e-05 Score=66.31 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=16.0
Q ss_pred cEEEEEeCCCchHHHHHHHHH-Hhcc
Q 026207 27 DFFLSYFRPGVGKTTVMREIA-RVLS 51 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~-~~l~ 51 (241)
.++.|+|||||||||+++.|+ +.++
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC----
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 389999999999999999999 8864
|
| >1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* | Back alignment and structure |
|---|
Probab=97.71 E-value=5.3e-05 Score=64.81 Aligned_cols=32 Identities=31% Similarity=0.497 Sum_probs=25.9
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
..++|+||||+||||+++.++..+. ..+.++.
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~~~----~~~~~~~ 70 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHELG----VNLRVTS 70 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHHHT----CCEEEEC
T ss_pred CcEEEECCCCCCHHHHHHHHHHHhC----CCEEEEe
Confidence 4689999999999999999998763 3445554
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.71 E-value=2.4e-05 Score=62.87 Aligned_cols=35 Identities=17% Similarity=0.148 Sum_probs=28.7
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
.++.|+|++||||||+++.+++.+.+. +..+.+.+
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~~~~~-~~~v~~~~ 57 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQTLREQ-GISVCVFH 57 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhc-CCeEEEec
Confidence 389999999999999999999988665 34555553
|
| >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.70 E-value=5.4e-05 Score=73.87 Aligned_cols=41 Identities=29% Similarity=0.396 Sum_probs=32.3
Q ss_pred eccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCccc
Q 026207 25 IFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEI 67 (241)
Q Consensus 25 ~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~ 67 (241)
+.+.++|+||||+|||+++++++..+... +..+++++ ..++
T Consensus 587 p~~~vLl~Gp~GtGKT~lA~~la~~~~~~-~~~~i~i~-~~~~ 627 (854)
T 1qvr_A 587 PIGSFLFLGPTGVGKTELAKTLAATLFDT-EEAMIRID-MTEY 627 (854)
T ss_dssp CSEEEEEBSCSSSSHHHHHHHHHHHHHSS-GGGEEEEC-TTTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhcCC-CCcEEEEe-chhc
Confidence 34689999999999999999999988543 35678887 4444
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=97.70 E-value=1.7e-05 Score=65.76 Aligned_cols=22 Identities=36% Similarity=0.321 Sum_probs=20.6
Q ss_pred cEEEEEeCCCchHHHHHHHHHH
Q 026207 27 DFFLSYFRPGVGKTTVMREIAR 48 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~ 48 (241)
.+++|+|||||||||+++.|+.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999993
|
| >3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00012 Score=66.59 Aligned_cols=112 Identities=19% Similarity=0.275 Sum_probs=58.8
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcccc------CCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHH
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDE------FQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAV 100 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~------~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (241)
+.++|+||||+||||+++.++..+... .+.+++.++-.. . .. .......+..+..+
T Consensus 202 ~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~----------~------~~--g~~e~~~~~~~~~~ 263 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGT----------K------YR--GEFEDRLKKVMDEI 263 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------------------------CTTHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCc----------c------cc--chHHHHHHHHHHHH
Confidence 368999999999999999999987432 123333333110 0 00 00123455666777
Q ss_pred HhcCCcEEEEcCCCCHHhHH-HHHHHHhCC-cEEEEeecCCChhhhhc-CCccccccccccEEEe
Q 026207 101 ENHMPEVIIVDEIGTEAEAH-ACRSIAERG-VMLIGTAHGEWLENIIK-NPILSDLIGGVDTVTL 162 (241)
Q Consensus 101 l~~~p~vlilDE~~~~~d~~-~~~~~~~~g-~~vi~t~H~~~~~~~~~-~p~l~~l~~~~d~V~~ 162 (241)
...+|.++|+| ...++. .+......| ..+|+++........+. .|.+..- ++.|.+
T Consensus 264 ~~~~~~iLfiD---~~~~a~~~L~~~L~~g~v~vI~at~~~e~~~~~~~~~al~~R---f~~i~v 322 (468)
T 3pxg_A 264 RQAGNIILFID---AAIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALERR---FQPIQV 322 (468)
T ss_dssp HTCCCCEEEEC---C--------CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHHS---EEEEEC
T ss_pred HhcCCeEEEEe---CchhHHHHHHHhhcCCCEEEEecCCHHHHHHHhhcCHHHHHh---Ccccee
Confidence 66788999999 222332 222223334 56777666554333332 2334333 565555
|
| >1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* | Back alignment and structure |
|---|
Probab=97.68 E-value=7.2e-05 Score=71.90 Aligned_cols=81 Identities=23% Similarity=0.296 Sum_probs=47.7
Q ss_pred eeccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcc--c-HHHHHHHH
Q 026207 24 IIFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSL--Q-HKVMIEAV 100 (241)
Q Consensus 24 ~~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~ 100 (241)
.+.+.++|+||||+|||++++.++..+. ..++.++ ..++...... ... ++...+.. . .......+
T Consensus 486 ~p~~~~ll~G~~GtGKT~la~~la~~l~----~~~~~i~-~s~~~~~~~~-~~l------~g~~~g~~g~~~~~~l~~~~ 553 (758)
T 1r6b_X 486 KPVGSFLFAGPTGVGKTEVTVQLSKALG----IELLRFD-MSEYMERHTV-SRL------IGAPPGYVGFDQGGLLTDAV 553 (758)
T ss_dssp SCSEEEEEECSTTSSHHHHHHHHHHHHT----CEEEEEE-GGGCSSSSCC-SSS------CCCCSCSHHHHHTTHHHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHHhc----CCEEEEe-chhhcchhhH-hhh------cCCCCCCcCccccchHHHHH
Confidence 4556899999999999999999999873 5677777 4444221100 000 11111110 0 11123333
Q ss_pred HhcCCcEEEEcCCCCH
Q 026207 101 ENHMPEVIIVDEIGTE 116 (241)
Q Consensus 101 l~~~p~vlilDE~~~~ 116 (241)
....+.++++||+...
T Consensus 554 ~~~~~~vl~lDEi~~~ 569 (758)
T 1r6b_X 554 IKHPHAVLLLDEIEKA 569 (758)
T ss_dssp HHCSSEEEEEETGGGS
T ss_pred HhCCCcEEEEeCcccc
Confidence 4455689999999754
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=2.5e-05 Score=60.12 Aligned_cols=27 Identities=22% Similarity=0.176 Sum_probs=23.2
Q ss_pred eeccEEEEEeCCCchHHHHHHHHHHhc
Q 026207 24 IIFDFFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 24 ~~~g~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
...++.+|+|||||||||++.++.-.+
T Consensus 21 f~~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 21 FKEGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 335699999999999999999998654
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=97.67 E-value=3e-05 Score=70.04 Aligned_cols=35 Identities=23% Similarity=0.314 Sum_probs=31.2
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
.+++++|+||+||||++..|+..+... |.+|.+++
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~-G~kVllv~ 134 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKR-GLKPALIA 134 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHH-HCCEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEe
Confidence 389999999999999999999988766 67888887
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=2.3e-05 Score=61.19 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=22.1
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
.+++|+|||||||||+++.+++.+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhh
Confidence 379999999999999999999875
|
| >1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00023 Score=61.10 Aligned_cols=35 Identities=20% Similarity=0.254 Sum_probs=27.8
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
..++|+||||+|||++++.+....... +..+++++
T Consensus 26 ~~vLi~Ge~GtGKt~lAr~i~~~~~~~-~~~~v~v~ 60 (304)
T 1ojl_A 26 ATVLIHGDSGTGKELVARALHACSARS-DRPLVTLN 60 (304)
T ss_dssp SCEEEESCTTSCHHHHHHHHHHHSSCS-SSCCCEEE
T ss_pred CcEEEECCCCchHHHHHHHHHHhCccc-CCCeEEEe
Confidence 468999999999999999999876533 34556665
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.64 E-value=3.5e-05 Score=60.88 Aligned_cols=35 Identities=34% Similarity=0.407 Sum_probs=29.3
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
.+++|.|+|||||||+++.++..+... +.++.+++
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~l~~~-~~~~~~~~ 48 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLLQKE-GYRVEVLD 48 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhc-CCeEEEee
Confidence 479999999999999999999998755 45666665
|
| >3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A | Back alignment and structure |
|---|
Probab=97.64 E-value=1.5e-05 Score=69.90 Aligned_cols=34 Identities=26% Similarity=0.245 Sum_probs=27.6
Q ss_pred eccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 25 IFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 25 ~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
....++|.||||+|||+++++++..+. ..++.++
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~----~~~~~~~ 83 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLD----VPFTMAD 83 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTT----CCEEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcC----CCEEEec
Confidence 445799999999999999999999873 4556555
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=97.62 E-value=4.5e-05 Score=65.50 Aligned_cols=36 Identities=22% Similarity=0.166 Sum_probs=31.4
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
..+++++|++|+||||++..++..+.+. +.+|.+++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~-g~~v~l~~ 133 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKK-GFKVGLVG 133 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHT-TCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEe
Confidence 3488999999999999999999999766 67888887
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=3.9e-05 Score=60.20 Aligned_cols=35 Identities=23% Similarity=0.077 Sum_probs=28.9
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
.++.|+|++||||||+++.+++.+.+. |..++.++
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~~-g~~~i~~d 40 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVCH-GIPCYTLD 40 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhhC-CCcEEEEC
Confidence 378999999999999999999988653 55666665
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=97.61 E-value=4.3e-05 Score=71.78 Aligned_cols=26 Identities=31% Similarity=0.465 Sum_probs=24.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDE 53 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~ 53 (241)
.++|+||||+||||+++++++.+.+.
T Consensus 62 ~vll~Gp~GtGKTtlar~ia~~l~~~ 87 (604)
T 3k1j_A 62 HVLLIGEPGTGKSMLGQAMAELLPTE 87 (604)
T ss_dssp CEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred EEEEEeCCCCCHHHHHHHHhccCCcc
Confidence 69999999999999999999998765
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.61 E-value=2.9e-05 Score=61.35 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=24.8
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcccc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDE 53 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~ 53 (241)
.++.|+|++|||||||++.|++.+.+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 468999999999999999999999876
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=3e-05 Score=59.94 Aligned_cols=24 Identities=17% Similarity=0.090 Sum_probs=21.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
+++|+|++||||||+++.|+..+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999998764
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.59 E-value=4.7e-05 Score=59.90 Aligned_cols=34 Identities=26% Similarity=0.427 Sum_probs=28.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
+++|.|+|||||||+.+.|+..+... |..+.+++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~-g~~~~~~~ 36 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQ-GINNKIIN 36 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTT-TCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhc-CceEEEEE
Confidence 68999999999999999999987643 45566665
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=4.1e-05 Score=59.75 Aligned_cols=25 Identities=20% Similarity=0.309 Sum_probs=22.9
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
.+++|+|+|||||||+.+.|+..+.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3789999999999999999999875
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.57 E-value=5.4e-05 Score=65.75 Aligned_cols=35 Identities=23% Similarity=0.143 Sum_probs=27.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcccc-CCCeEEEEc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDE-FQKRVVIVD 62 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~-~g~~v~~i~ 62 (241)
+++|+||+||||||+++.|++.+... .+..+..+.
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~ 129 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVIT 129 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEe
Confidence 79999999999999999999988632 123455554
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=97.56 E-value=3.6e-05 Score=67.71 Aligned_cols=29 Identities=14% Similarity=0.117 Sum_probs=26.0
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccC
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEF 54 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~ 54 (241)
...++|+||||||||||++.|++.+.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~~ 198 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTTS 198 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 34799999999999999999999998764
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=3.3e-05 Score=66.57 Aligned_cols=84 Identities=13% Similarity=0.133 Sum_probs=49.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCC-------Cccc------cccc-h---hhcCCCCCc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGD-------IPHS------AIGT-A---RRMQVPEPS 90 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~-------~~~~------~~~~-~---~~~~~~~~~ 90 (241)
+++|+||||||||||++.|++.+ . |.-+.++.+...+..... .+.. .+.. . .....+|++
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl~--~-G~I~~~v~q~~~lf~~ti~~~ni~~~~~~~~~~~~~i~~~L~~gldg~~LSgG 204 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHFL--G-GSVLSFANHKSHFWLASLADTRAALVDDATHACWRYFDTYLRNALDGYPVSID 204 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH--T-CEEECGGGTTSGGGGGGGTTCSCEEEEEECHHHHHHHHHTTTGGGGTCCEECC
T ss_pred EEEEECCCCCcHHHHHHHHhhhc--C-ceEEEEecCccccccccHHHHhhccCccccHHHHHHHHHHhHccCCccCcCHH
Confidence 89999999999999999999998 2 332223332211111000 0000 0000 0 011235667
Q ss_pred ccHHHHHHHHHhcCCcEEEEcCCCCHHhHHH
Q 026207 91 LQHKVMIEAVENHMPEVIIVDEIGTEAEAHA 121 (241)
Q Consensus 91 ~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~ 121 (241)
++|+ ++++..+|++|| ++.+|+..
T Consensus 205 qkQR---ARAll~~p~iLl----Ts~LD~~~ 228 (305)
T 2v9p_A 205 RKHK---AAVQIKAPPLLV----TSNIDVQA 228 (305)
T ss_dssp CSSC---CCCEECCCCEEE----EESSCSTT
T ss_pred HHHH---HHHHhCCCCEEE----ECCCCHHH
Confidence 8888 888889999999 77777643
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=97.54 E-value=3.3e-05 Score=66.80 Aligned_cols=25 Identities=32% Similarity=0.251 Sum_probs=22.9
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
.++++|+|++|||||||++.+++..
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc
Confidence 3589999999999999999999976
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=4.4e-05 Score=61.70 Aligned_cols=35 Identities=17% Similarity=0.104 Sum_probs=29.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
+++|.|++||||||+++.|++.+.+..|.++++++
T Consensus 27 ~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 27 TIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 79999999999999999999998744455667776
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=3.4e-05 Score=67.04 Aligned_cols=25 Identities=44% Similarity=0.489 Sum_probs=23.1
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
..++|+||||+|||||++.+++.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhC
Confidence 5799999999999999999999874
|
| >2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00018 Score=58.09 Aligned_cols=23 Identities=30% Similarity=0.221 Sum_probs=19.1
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
+++++|+||+|||+++...+...
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 78999999999999987765443
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.52 E-value=5.3e-05 Score=61.22 Aligned_cols=26 Identities=12% Similarity=0.137 Sum_probs=23.3
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhcc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
..+++|+||+|||||||++.|++..+
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34899999999999999999999875
|
| >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00011 Score=71.65 Aligned_cols=77 Identities=23% Similarity=0.273 Sum_probs=43.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcccc------CCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHH
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDE------FQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVE 101 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~------~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 101 (241)
.++|+||||+||||+++.++..+... .+.++++++ ...+... ....+ ......+..+..+.
T Consensus 193 ~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~-~~~l~~g----~~~~g--------~~~~~l~~~~~~~~ 259 (854)
T 1qvr_A 193 NPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQ-MGSLLAG----AKYRG--------EFEERLKAVIQEVV 259 (854)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEEC-C-----------------------CHHHHHHHHHHHHH
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEee-hHHhhcc----Cccch--------HHHHHHHHHHHHHH
Confidence 58999999999999999999987442 146777776 3222100 00000 00122334444444
Q ss_pred hc-CCcEEEEcCCCCHH
Q 026207 102 NH-MPEVIIVDEIGTEA 117 (241)
Q Consensus 102 ~~-~p~vlilDE~~~~~ 117 (241)
.. .|.++||||+....
T Consensus 260 ~~~~~~iL~IDEi~~l~ 276 (854)
T 1qvr_A 260 QSQGEVILFIDELHTVV 276 (854)
T ss_dssp TTCSSEEEEECCC----
T ss_pred hcCCCeEEEEecHHHHh
Confidence 43 67899999997653
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=97.50 E-value=7.3e-05 Score=59.15 Aligned_cols=36 Identities=19% Similarity=0.305 Sum_probs=28.7
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
..+++|+|++|||||||++.+++.+.+. +.++..+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~-g~~v~~i~ 41 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCAR-GIRPGLIK 41 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcccc-CCceeEEe
Confidence 3579999999999999999999987654 45555443
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=5e-05 Score=61.66 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=22.0
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
..+.|+|||||||||+++.|++.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 379999999999999999999876
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.49 E-value=4.3e-05 Score=61.21 Aligned_cols=24 Identities=25% Similarity=0.227 Sum_probs=22.2
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
.+++|+|+|||||||+++.|++.+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 379999999999999999999876
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.48 E-value=5.3e-05 Score=60.68 Aligned_cols=25 Identities=32% Similarity=0.232 Sum_probs=22.7
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
.+++|+|||||||||+.+.|+..+.
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3899999999999999999998873
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.47 E-value=6.2e-05 Score=58.59 Aligned_cols=21 Identities=38% Similarity=0.493 Sum_probs=20.0
Q ss_pred EEEEEeCCCchHHHHHHHHHH
Q 026207 28 FFLSYFRPGVGKTTVMREIAR 48 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~ 48 (241)
+++|.|+|||||||+.+.|+.
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 689999999999999999998
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.47 E-value=4.5e-05 Score=65.45 Aligned_cols=30 Identities=20% Similarity=0.180 Sum_probs=25.1
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCC
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQK 56 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~ 56 (241)
.++.|.||||||||||+++|++...+..|.
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~~~~G~ 199 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLKLRVSE 199 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCCCC---
T ss_pred CeEEEECCCCCcHHHHHHHhcccccccccc
Confidence 379999999999999999999998877444
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.47 E-value=5.5e-05 Score=60.66 Aligned_cols=21 Identities=24% Similarity=0.090 Sum_probs=19.9
Q ss_pred EEEEEeCCCchHHHHHHHHHH
Q 026207 28 FFLSYFRPGVGKTTVMREIAR 48 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~ 48 (241)
++.|+|||||||||+++.+++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999988
|
| >1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0004 Score=60.33 Aligned_cols=26 Identities=35% Similarity=0.393 Sum_probs=23.1
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSD 52 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~ 52 (241)
..++|+||+|+||||+++.++..+..
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 36899999999999999999988753
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.46 E-value=8.8e-05 Score=58.47 Aligned_cols=35 Identities=26% Similarity=0.166 Sum_probs=29.7
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
.++.|+|++||||||++..++..+... |.+|..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~-g~~v~~ik 39 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVRE-GWRVGTVK 39 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhc-CCeeeEEE
Confidence 478999999999999999999988655 56777665
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.45 E-value=6.9e-05 Score=59.93 Aligned_cols=30 Identities=27% Similarity=0.139 Sum_probs=24.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
.++|+|+|||||||+++.|++ + |..+++.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~----g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-L----GAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-T----TCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-C----CCEEEEcc
Confidence 589999999999999999998 5 35555554
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=97.45 E-value=6.2e-05 Score=60.50 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=22.9
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
.+++|+|||||||||+++.|+..++
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCc
Confidence 3799999999999999999999874
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.44 E-value=8.1e-05 Score=65.24 Aligned_cols=36 Identities=17% Similarity=0.243 Sum_probs=28.9
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
..++.|+|+||||||||++.+++.+.+. +.++.++.
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~-~~~v~V~~ 109 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTER-GHKLSVLA 109 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhc-CCeEEEEe
Confidence 4589999999999999999999988766 34554443
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.44 E-value=8.6e-05 Score=66.84 Aligned_cols=36 Identities=22% Similarity=0.295 Sum_probs=31.3
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
..+++++|++|+||||++..+++.+.+. +.+|..++
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~-g~~Vllvd 133 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGK-GRRPLLVA 133 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEee
Confidence 3478899999999999999999999876 67888776
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00011 Score=57.87 Aligned_cols=34 Identities=21% Similarity=0.136 Sum_probs=27.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
+++|+|++||||||+.+.++..+... |..++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~-g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQK-GYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEe
Confidence 58999999999999999999987433 45566555
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=8e-05 Score=60.19 Aligned_cols=28 Identities=21% Similarity=0.147 Sum_probs=23.5
Q ss_pred eeccEEEEEeCCCchHHHHHHHHHHhcc
Q 026207 24 IIFDFFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 24 ~~~g~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
...++.+|+|||||||||++.+|.-.+.
T Consensus 21 f~~~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 21 FKEGINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eCCCeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3456999999999999999999876553
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=97.42 E-value=7e-05 Score=57.68 Aligned_cols=20 Identities=25% Similarity=0.360 Sum_probs=18.6
Q ss_pred cEEEEEeCCCchHHHHHHHH
Q 026207 27 DFFLSYFRPGVGKTTVMREI 46 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l 46 (241)
.+++|+|||||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999999
|
| >1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00011 Score=62.59 Aligned_cols=34 Identities=26% Similarity=0.406 Sum_probs=25.7
Q ss_pred EEEEeCCCchHHHHHHHHHHhcccc-CCCeEEEEc
Q 026207 29 FLSYFRPGVGKTTVMREIARVLSDE-FQKRVVIVD 62 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~l~~~-~g~~v~~i~ 62 (241)
++|+||+|+||||+++.++..+... ....+++++
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~ 79 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELN 79 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEEC
T ss_pred EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEec
Confidence 9999999999999999999886322 112355555
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.42 E-value=8.3e-05 Score=69.15 Aligned_cols=35 Identities=26% Similarity=0.263 Sum_probs=29.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
++.|+|+|||||||+++.|++.+.+..|..+.+++
T Consensus 371 iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lD 405 (552)
T 3cr8_A 371 TVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLD 405 (552)
T ss_dssp EEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEES
T ss_pred EEEEECCCCChHHHHHHHHHHhhcccCCceEEEEC
Confidence 79999999999999999999999876444565666
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=97.40 E-value=7.9e-05 Score=58.56 Aligned_cols=25 Identities=28% Similarity=0.239 Sum_probs=22.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSD 52 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~ 52 (241)
+++|.|+|||||||+.+.|+..+..
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 7999999999999999999997753
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00013 Score=58.18 Aligned_cols=33 Identities=12% Similarity=0.102 Sum_probs=26.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
+++|.|+|||||||+.+.|+..+... | .++...
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~~l~~~-g-~~~~~~ 38 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKDWIELK-R-DVYLTE 38 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTT-S-CEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhc-C-CEEEec
Confidence 78999999999999999999987643 3 455443
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00058 Score=62.83 Aligned_cols=36 Identities=14% Similarity=0.241 Sum_probs=25.8
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhc--cccCC-CeEEEEc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVL--SDEFQ-KRVVIVD 62 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l--~~~~g-~~v~~i~ 62 (241)
+-++|.|++||||||+++.++..+ ...++ -+++.+|
T Consensus 168 pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liD 206 (512)
T 2ius_A 168 PHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMID 206 (512)
T ss_dssp CSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEEC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEEC
Confidence 469999999999999999987633 22222 3556666
|
| >3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00058 Score=65.65 Aligned_cols=112 Identities=19% Similarity=0.270 Sum_probs=58.9
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcccc------CCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHH
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDE------FQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAV 100 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~------~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (241)
..++|+||||+||||+++.++..+... .+..++.++- +. .. ........+..+..+
T Consensus 202 ~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~---------------g~-~~--~G~~e~~l~~~~~~~ 263 (758)
T 3pxi_A 202 NNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM---------------GT-KY--RGEFEDRLKKVMDEI 263 (758)
T ss_dssp CEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------------------------CTTHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---------------cc-cc--cchHHHHHHHHHHHH
Confidence 358999999999999999999987432 0122222221 00 00 001134556677777
Q ss_pred HhcCCcEEEEcCCCCHHhHHH-HHHHH-hCCcEEEEeecCCChhhhhc-CCccccccccccEEEe
Q 026207 101 ENHMPEVIIVDEIGTEAEAHA-CRSIA-ERGVMLIGTAHGEWLENIIK-NPILSDLIGGVDTVTL 162 (241)
Q Consensus 101 l~~~p~vlilDE~~~~~d~~~-~~~~~-~~g~~vi~t~H~~~~~~~~~-~p~l~~l~~~~d~V~~ 162 (241)
...+|.+||+| ...+... +..+. .....+|+++........+. .|.+..- ++.|.+
T Consensus 264 ~~~~~~iLfiD---~~~~~~~~L~~~l~~~~v~~I~at~~~~~~~~~~~d~al~rR---f~~i~v 322 (758)
T 3pxi_A 264 RQAGNIILFID---AAIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALERR---FQPIQV 322 (758)
T ss_dssp HTCCCCEEEEC---C--------CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHHS---EEEEEC
T ss_pred HhcCCEEEEEc---CchhHHHHHHHHHhcCCEEEEeCCChHHHHHHhhccHHHHhh---CcEEEe
Confidence 77889999999 2223322 22222 33456777665554333222 2444443 555555
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.39 E-value=8.5e-05 Score=58.36 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=21.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
+++|+|+|||||||+.+.|+..+
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999865
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=97.39 E-value=8.1e-05 Score=62.20 Aligned_cols=24 Identities=29% Similarity=0.286 Sum_probs=21.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
+++|+|||||||||+.+.|+..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCC
Confidence 689999999999999999998764
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.38 E-value=9.8e-05 Score=65.07 Aligned_cols=47 Identities=13% Similarity=0.159 Sum_probs=34.8
Q ss_pred ccHHHHHHHHHh---------cCCcEEEEcCCCCHHhHHHHH----HHHhCCcEEEEeec
Q 026207 91 LQHKVMIEAVEN---------HMPEVIIVDEIGTEAEAHACR----SIAERGVMLIGTAH 137 (241)
Q Consensus 91 ~~~~~~~~~~l~---------~~p~vlilDE~~~~~d~~~~~----~~~~~g~~vi~t~H 137 (241)
++++..++.++. .+|+++++|||++.+|+.... .....+.++|+++|
T Consensus 270 qqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th 329 (359)
T 2o5v_A 270 EGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTE 329 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESS
T ss_pred HHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEe
Confidence 377778888887 789999999999999985433 22222467888888
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=9e-05 Score=59.50 Aligned_cols=24 Identities=21% Similarity=0.188 Sum_probs=22.1
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
+++|+|+|||||||+++.|++.+.
T Consensus 23 ~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 23 IIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTST
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999999763
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.38 E-value=9.8e-05 Score=63.40 Aligned_cols=28 Identities=18% Similarity=0.210 Sum_probs=24.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK 56 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~ 56 (241)
++.|+||||+|||||+++|+ ...+..|.
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~~~~~G~ 194 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GEELRTQE 194 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SCCCCCSC
T ss_pred EEEEECCCCCCHHHHHHHHH-HhhCcccc
Confidence 79999999999999999999 88766444
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=97.38 E-value=8.9e-05 Score=58.46 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=21.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
+++|.|+|||||||+.+.|+..+
T Consensus 7 ~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 78999999999999999999876
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.36 E-value=8.9e-05 Score=57.90 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=21.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
.++|+|+|||||||+.+.|+..+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998763
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00011 Score=66.57 Aligned_cols=31 Identities=19% Similarity=0.238 Sum_probs=26.8
Q ss_pred eecc-EEEEEeCCCchHHHHHHHHHHhccccC
Q 026207 24 IIFD-FFLSYFRPGVGKTTVMREIARVLSDEF 54 (241)
Q Consensus 24 ~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~ 54 (241)
+..| .++|+||||||||||+++|++...++.
T Consensus 154 i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~ 185 (438)
T 2dpy_A 154 VGRGQRMGLFAGSGVGKSVLLGMMARYTRADV 185 (438)
T ss_dssp CBTTCEEEEEECTTSSHHHHHHHHHHHSCCSE
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcccCCCe
Confidence 3344 899999999999999999999998773
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00022 Score=68.85 Aligned_cols=93 Identities=13% Similarity=0.083 Sum_probs=50.9
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccC--CCeEEEEcCCcccCCC---------CCCccccccch----------hhcC
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEF--QKRVVIVDTSNEIGGD---------GDIPHSAIGTA----------RRMQ 85 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~--g~~v~~i~~~~e~~~~---------~~~~~~~~~~~----------~~~~ 85 (241)
..+++.|||||||||++.+++....... +.+++++....++... +.......+.. .++.
T Consensus 110 ~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~~~~~~~I~ 189 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILK 189 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEEECCTTCSEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHHhCCchhheecceeccccccCCCCCEE
Confidence 3799999999999998888866433221 4567766533222100 00000111110 0111
Q ss_pred CCCCcccHHHHHHHHHhcCCcEEEEcCCCC-HHhH
Q 026207 86 VPEPSLQHKVMIEAVENHMPEVIIVDEIGT-EAEA 119 (241)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~p~vlilDE~~~-~~d~ 119 (241)
+...+..++.++......++++||+||+.. .++.
T Consensus 190 v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~ 224 (773)
T 2xau_A 190 YMTDGMLLREAMEDHDLSRYSCIILDEAHERTLAT 224 (773)
T ss_dssp EEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHH
T ss_pred EECHHHHHHHHhhCccccCCCEEEecCccccccch
Confidence 112233445555555667899999999984 5554
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0001 Score=58.35 Aligned_cols=25 Identities=20% Similarity=0.242 Sum_probs=22.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSD 52 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~ 52 (241)
.++|+|+||||||||++.+++...+
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~ 55 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFN 55 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCC
Confidence 5899999999999999999997653
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00011 Score=66.05 Aligned_cols=28 Identities=29% Similarity=0.273 Sum_probs=24.6
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhcccc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDE 53 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~ 53 (241)
.++++|+|||||||||++.+++..+.+.
T Consensus 26 ~~~~~i~G~nG~GKstll~ai~~~~~~~ 53 (430)
T 1w1w_A 26 SNFTSIIGPNGSGKSNMMDAISFVLGVR 53 (430)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTTC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhhccc
Confidence 3599999999999999999999988654
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=97.35 E-value=8.3e-05 Score=62.04 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=21.7
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
.++.|.||+||||||+++.|+..+
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 489999999999999999999654
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=97.35 E-value=9.9e-05 Score=64.98 Aligned_cols=29 Identities=14% Similarity=0.159 Sum_probs=25.4
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcc-ccCC
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLS-DEFQ 55 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~-~~~g 55 (241)
.+++|+||||+|||||++.|++... +..|
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~~~~~G 245 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQNEILTN 245 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSSCCCCC
T ss_pred CEEEEECCCCccHHHHHHHHhccccccccC
Confidence 3799999999999999999999887 6533
|
| >1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00025 Score=68.14 Aligned_cols=77 Identities=18% Similarity=0.210 Sum_probs=44.8
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcccc------CCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHH
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDE------FQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAV 100 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~------~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (241)
..++|+||||+||||+++.++..+... .+.+++.++ ...+... .... .......+..+..+
T Consensus 208 ~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~-~~~l~~~----~~~~--------g~~e~~l~~~~~~~ 274 (758)
T 1r6b_X 208 NNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD-IGSLLAG----TKYR--------GDFEKRFKALLKQL 274 (758)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECC-CC---CC----CCCS--------SCHHHHHHHHHHHH
T ss_pred CCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEc-HHHHhcc----cccc--------chHHHHHHHHHHHH
Confidence 358999999999999999999987432 123344333 2111100 0000 00012334455555
Q ss_pred HhcCCcEEEEcCCCCH
Q 026207 101 ENHMPEVIIVDEIGTE 116 (241)
Q Consensus 101 l~~~p~vlilDE~~~~ 116 (241)
...++.++||||+...
T Consensus 275 ~~~~~~iL~IDEi~~l 290 (758)
T 1r6b_X 275 EQDTNSILFIDEIHTI 290 (758)
T ss_dssp SSSSCEEEEETTTTTT
T ss_pred HhcCCeEEEEechHHH
Confidence 5566899999999754
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0001 Score=58.51 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=22.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
+++|.|++||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999999774
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00019 Score=59.02 Aligned_cols=33 Identities=30% Similarity=0.355 Sum_probs=27.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
+++|.|||||||||+++.|+..+.. +..++...
T Consensus 28 ~i~i~G~~GsGKsT~~~~l~~~l~~--~~~~~~~~ 60 (229)
T 4eaq_A 28 FITFEGPEGSGKTTVINEVYHRLVK--DYDVIMTR 60 (229)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTT--TSCEEEEC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHhc--CCCceeec
Confidence 7999999999999999999999875 45555443
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=5.8e-05 Score=60.63 Aligned_cols=34 Identities=15% Similarity=0.233 Sum_probs=27.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
+++|.|++||||||+++.|+..+... +..+..+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~-g~~v~~~~ 35 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAA-GRSVATLA 35 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEE-EEEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc-CCeEEEEe
Confidence 68999999999999999999988644 34555554
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00012 Score=71.83 Aligned_cols=56 Identities=14% Similarity=0.123 Sum_probs=46.5
Q ss_pred CCCCCcccHHHHHHHHHhcCC--cEEEEcCCCCHHhHHH-------HHHHHhCCcEEEEeecCCC
Q 026207 85 QVPEPSLQHKVMIEAVENHMP--EVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEW 140 (241)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~p--~vlilDE~~~~~d~~~-------~~~~~~~g~~vi~t~H~~~ 140 (241)
..+|++++|+..++.++..+| +++|||||++++|+.. +...++.|.+||++.|...
T Consensus 503 ~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~ 567 (972)
T 2r6f_A 503 GTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDED 567 (972)
T ss_dssp GGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHH
T ss_pred ccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 446778899999999999884 9999999999999832 2345667999999999975
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00011 Score=57.74 Aligned_cols=25 Identities=24% Similarity=0.211 Sum_probs=22.4
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
..++|+||+||||||+.+.|+..+.
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999998763
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00011 Score=71.95 Aligned_cols=57 Identities=11% Similarity=0.115 Sum_probs=46.7
Q ss_pred cCCCCCcccHHHHHHHHHhcCCc--EEEEcCCCCHHhHHHH-------HHHHhCCcEEEEeecCCC
Q 026207 84 MQVPEPSLQHKVMIEAVENHMPE--VIIVDEIGTEAEAHAC-------RSIAERGVMLIGTAHGEW 140 (241)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~p~--vlilDE~~~~~d~~~~-------~~~~~~g~~vi~t~H~~~ 140 (241)
...+|+|++|++.+++++..+|+ ++|+|||++++|+... ....+.|.++|+++|..+
T Consensus 462 ~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~ 527 (916)
T 3pih_A 462 ATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEE 527 (916)
T ss_dssp GGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHH
T ss_pred cccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 44577889999999999999877 9999999999988332 234456999999999875
|
| >2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00037 Score=62.92 Aligned_cols=36 Identities=28% Similarity=0.448 Sum_probs=31.1
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
.+++++|++|+||||+...|+..+....|.+|+.++
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd 136 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVS 136 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 378889999999999999999988754368898887
|
| >2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00014 Score=61.80 Aligned_cols=23 Identities=39% Similarity=0.437 Sum_probs=21.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
.++|+||+|+||||+++.++..+
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHHh
Confidence 38999999999999999999986
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00016 Score=60.44 Aligned_cols=34 Identities=29% Similarity=0.555 Sum_probs=27.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
+++|+|+|||||||+.+.|+..+... |..+++++
T Consensus 6 lIvl~G~pGSGKSTla~~La~~L~~~-g~~~i~~~ 39 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSKNLAKILSKN-NIDVIVLG 39 (260)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhC-CCEEEEEC
Confidence 79999999999999999999876433 45555555
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00016 Score=63.72 Aligned_cols=39 Identities=13% Similarity=0.083 Sum_probs=28.2
Q ss_pred EEEEEeEEeeC-cceeeccEEEEEeCCCchHHHHHHHHHH
Q 026207 10 LIVKFFYALYS-INKIIFDFFLSYFRPGVGKTTVMREIAR 48 (241)
Q Consensus 10 ~~~r~~~~~~~-~~~~~~g~vll~Gp~GsGKTTLl~~l~~ 48 (241)
+.++.+...-+ .++...|+.+|+||||+||||++-+|.-
T Consensus 8 L~l~nFr~~~~~~i~f~~gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 8 IRMNNFKSHVNSRIKFEKGIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EEEEEETTEEEEEEECCSEEEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEccccccceEEecCCCeEEEECCCCCCHHHHHHHHHH
Confidence 34666654321 2334457999999999999999999875
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00012 Score=58.25 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=21.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++|+|+||+|||||++.+++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999999974
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00014 Score=66.95 Aligned_cols=52 Identities=13% Similarity=0.120 Sum_probs=44.1
Q ss_pred CCcccHHHHHHHHHhcCC--cEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCC
Q 026207 88 EPSLQHKVMIEAVENHMP--EVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 88 ~~~~~~~~~~~~~l~~~p--~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~ 140 (241)
|+|.+++..++.++..+| +++|+|||++++|+.... .... |.+||+++|...
T Consensus 399 SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~ 459 (517)
T 4ad8_A 399 SGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQ 459 (517)
T ss_dssp CSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHH
T ss_pred CHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH
Confidence 889999999999999999 999999999999984332 3334 889999999864
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00014 Score=57.24 Aligned_cols=23 Identities=26% Similarity=0.301 Sum_probs=21.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
+++|.|+|||||||+.+.|+..+
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998865
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00015 Score=57.21 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=21.9
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
.+++|.|+|||||||+.+.|+..+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 379999999999999999999876
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00015 Score=57.35 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=22.5
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
.+++|+|+|||||||+.+.|+..+.
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3799999999999999999998763
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00019 Score=62.57 Aligned_cols=35 Identities=23% Similarity=0.283 Sum_probs=28.8
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
.+++|+|+||+||||+++.+++.+.+. +.++..++
T Consensus 57 ~~i~i~G~~g~GKSTl~~~l~~~~~~~-~~~v~v~~ 91 (341)
T 2p67_A 57 LRLGVTGTPGAGKSTFLEAFGMLLIRE-GLKVAVIA 91 (341)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhc-CCeEEEEe
Confidence 479999999999999999999988765 45555554
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00014 Score=57.03 Aligned_cols=24 Identities=42% Similarity=0.418 Sum_probs=21.9
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
.+++|+|+|||||||+++.++..+
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999876
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00012 Score=57.15 Aligned_cols=24 Identities=25% Similarity=0.207 Sum_probs=18.1
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
+++|+|+|||||||+.+.|+..+.
T Consensus 7 ~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp EEEEECCC----CHHHHHHHHHST
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999998764
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.23 E-value=5.6e-05 Score=65.20 Aligned_cols=29 Identities=21% Similarity=0.219 Sum_probs=21.0
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCC
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQ 55 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g 55 (241)
.+++|+||||+|||||++.|++...+..|
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~~~~~G 202 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPELGLRTN 202 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-------
T ss_pred CEEEEECCCCCCHHHHHHHhccccccccc
Confidence 38999999999999999999998876533
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00015 Score=61.75 Aligned_cols=24 Identities=33% Similarity=0.347 Sum_probs=22.1
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
+++|+|||||||||+.+.++..++
T Consensus 35 livl~G~sGsGKSTla~~L~~~~~ 58 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRSAIFEETQ 58 (287)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 799999999999999999998764
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00018 Score=56.49 Aligned_cols=23 Identities=30% Similarity=0.366 Sum_probs=21.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
+++|+|+|||||||+.+.|+..+
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 79999999999999999999865
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00013 Score=65.74 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=20.8
Q ss_pred EEEEeCCCchHHHHHHHHHHhc
Q 026207 29 FLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~l 50 (241)
++|+||||||||||++.|++..
T Consensus 45 vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTSC
T ss_pred EEEECCCCCCHHHHHHHHhCcc
Confidence 8999999999999999999974
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00027 Score=56.65 Aligned_cols=34 Identities=18% Similarity=0.218 Sum_probs=26.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
+++|+|++||||||+.+.|+..+... +..+..+.
T Consensus 11 ~I~l~G~~GsGKsT~~~~L~~~l~~~-~~~v~~~~ 44 (215)
T 1nn5_A 11 LIVLEGVDRAGKSTQSRKLVEALCAA-GHRAELLR 44 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc-CCcEEEee
Confidence 79999999999999999999887543 45554443
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00019 Score=56.65 Aligned_cols=24 Identities=38% Similarity=0.338 Sum_probs=21.8
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
..++|+|+|||||||+.+.|+..+
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~l 34 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAEL 34 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHHhc
Confidence 379999999999999999999873
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00012 Score=62.80 Aligned_cols=25 Identities=24% Similarity=0.382 Sum_probs=19.1
Q ss_pred EEEEeCCCchHHHHHHHHHHh-cccc
Q 026207 29 FLSYFRPGVGKTTVMREIARV-LSDE 53 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~-l~~~ 53 (241)
++|+||||+|||||++.|++. +.+.
T Consensus 21 I~lvG~nG~GKSTLl~~L~g~~~~~~ 46 (301)
T 2qnr_A 21 LMVVGESGLGKSTLINSLFLTDLYPE 46 (301)
T ss_dssp EEEEEETTSSHHHHHHHHHC------
T ss_pred EEEECCCCCCHHHHHHHHhCCCccCC
Confidence 699999999999999999886 5444
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00022 Score=58.20 Aligned_cols=24 Identities=29% Similarity=0.275 Sum_probs=21.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
+++|.|+|||||||+.+.|+..+.
T Consensus 9 ~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 9 RAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 699999999999999999998763
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00019 Score=57.91 Aligned_cols=22 Identities=27% Similarity=0.277 Sum_probs=20.4
Q ss_pred EEEEeCCCchHHHHHHHHHHhc
Q 026207 29 FLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~l 50 (241)
++|+|||||||||+.+.|+..+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998876
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00014 Score=60.59 Aligned_cols=24 Identities=29% Similarity=0.270 Sum_probs=22.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
+++|+|+|||||||+.+.|+..+.
T Consensus 34 ~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 34 AILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp EEEEESCGGGTTHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999999875
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00016 Score=55.97 Aligned_cols=24 Identities=42% Similarity=0.409 Sum_probs=21.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
+++|+|++||||||+.+.|+..+.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998763
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00019 Score=57.29 Aligned_cols=24 Identities=33% Similarity=0.328 Sum_probs=22.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
+++|+|+|||||||+.+.|+..+.
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 799999999999999999998763
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00019 Score=69.83 Aligned_cols=54 Identities=13% Similarity=0.070 Sum_probs=45.3
Q ss_pred CCCcccHHHHHHHHHhcCCc--EEEEcCCCCHHhHHH-------HHHHHhCCcEEEEeecCCC
Q 026207 87 PEPSLQHKVMIEAVENHMPE--VIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEW 140 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~--vlilDE~~~~~d~~~-------~~~~~~~g~~vi~t~H~~~ 140 (241)
+|++++|++.++.++..+|+ ++|+|||++++|+.. +...++.|.+||++.|..+
T Consensus 380 LSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl~ 442 (842)
T 2vf7_A 380 LSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDLD 442 (842)
T ss_dssp SCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHH
T ss_pred CCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCHH
Confidence 56678999999999999994 999999999998732 2345667999999999885
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00021 Score=56.81 Aligned_cols=32 Identities=16% Similarity=0.124 Sum_probs=25.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
+++|+|++||||||+.+.|+..+. |..++.++
T Consensus 6 ~I~l~G~~GsGKsT~~~~L~~~l~---g~~~~~~~ 37 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQCMNIMESIP---ANTIKYLN 37 (204)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTSC---GGGEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHC---CCceEEEe
Confidence 689999999999999999999872 23455554
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00019 Score=57.88 Aligned_cols=23 Identities=26% Similarity=0.252 Sum_probs=20.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
.++|+|||||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998865
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00011 Score=60.21 Aligned_cols=23 Identities=26% Similarity=0.158 Sum_probs=21.5
Q ss_pred cEEEEEeCCCchHHHHHHHHHHh
Q 026207 27 DFFLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~ 49 (241)
.++.|.|++||||||+++.|++.
T Consensus 21 ~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 38999999999999999999987
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00021 Score=57.18 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=21.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSD 52 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~ 52 (241)
.++|+||+|+|||||++.|....+.
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~ 27 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCC
Confidence 3789999999999999999988753
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0002 Score=57.33 Aligned_cols=34 Identities=18% Similarity=0.155 Sum_probs=26.3
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEE
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIV 61 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i 61 (241)
-+++|+|++||||||+.+.|+..+... +..+..+
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~~~-~~~~~~~ 44 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLKNN-NVEVKHL 44 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHc-CCcEEEE
Confidence 379999999999999999999876533 3444333
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0002 Score=58.09 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
+++|.|||||||+|..+.|+..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999875
|
| >1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00023 Score=62.65 Aligned_cols=36 Identities=22% Similarity=0.291 Sum_probs=28.0
Q ss_pred cEEEE--EeCCCchHHHHHHHHHHhcccc-----CCCeEEEEc
Q 026207 27 DFFLS--YFRPGVGKTTVMREIARVLSDE-----FQKRVVIVD 62 (241)
Q Consensus 27 g~vll--~Gp~GsGKTTLl~~l~~~l~~~-----~g~~v~~i~ 62 (241)
+.++| +||+|+|||||++.++..+... .+..+++++
T Consensus 51 ~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN 93 (412)
T ss_dssp EEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE
Confidence 47888 9999999999999999877542 134667776
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00021 Score=58.50 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=21.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
+++|+|||||||+|..+.|+..+
T Consensus 31 iI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 78999999999999999999875
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0002 Score=56.20 Aligned_cols=25 Identities=32% Similarity=0.388 Sum_probs=22.1
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
.+++|+|+|||||||+.+.|+..+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 3589999999999999999998763
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00026 Score=56.49 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=21.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
+++|+|++||||||+.+.|+..+
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 79999999999999999999875
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00023 Score=55.06 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=22.3
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
.+++|+|++||||||+.+.|+..+.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999998763
|
| >2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00035 Score=58.16 Aligned_cols=35 Identities=17% Similarity=0.134 Sum_probs=28.9
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
..++|+||||+|||++++.++...... +..+++++
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~~~~-~~~~~~v~ 64 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLSSRW-QGPFISLN 64 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTSTTT-TSCEEEEE
T ss_pred CCEEEECCCCCcHHHHHHHHHHhcCcc-CCCeEEEe
Confidence 468999999999999999999987543 35677776
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0002 Score=58.11 Aligned_cols=24 Identities=21% Similarity=0.079 Sum_probs=21.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
+++|.|||||||||+.+.|+..+.
T Consensus 7 ~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 7 KVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999998764
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00024 Score=57.61 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=21.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
+++|.|+|||||||+.+.|+..+.
T Consensus 6 ~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 6 RMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999998763
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00033 Score=61.98 Aligned_cols=38 Identities=21% Similarity=0.279 Sum_probs=31.0
Q ss_pred eccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcC
Q 026207 25 IFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDT 63 (241)
Q Consensus 25 ~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~ 63 (241)
..+.++|+||+|+||||+++.++...... +.+++++|.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~-~~~~~~~D~ 71 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQ-GSRVIIIDP 71 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEEES
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHC-CCEEEEEeC
Confidence 56689999999999999999999877544 566777763
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00025 Score=54.63 Aligned_cols=24 Identities=25% Similarity=0.063 Sum_probs=21.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
.++|+|++||||||+.+.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999998763
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00021 Score=61.09 Aligned_cols=27 Identities=22% Similarity=0.177 Sum_probs=24.3
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcccc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDE 53 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~ 53 (241)
.++.|.||+|||||||++.|++.+.+.
T Consensus 32 ~ii~I~G~sGsGKSTla~~L~~~l~~~ 58 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQIYNHLMEK 58 (290)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 389999999999999999999998753
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00024 Score=57.09 Aligned_cols=26 Identities=35% Similarity=0.393 Sum_probs=23.2
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSD 52 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~ 52 (241)
..++|+||+|+||||+++.++..+..
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 37999999999999999999987753
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00023 Score=61.68 Aligned_cols=25 Identities=36% Similarity=0.582 Sum_probs=22.7
Q ss_pred EEEEeCCCchHHHHHHHHHHhcccc
Q 026207 29 FLSYFRPGVGKTTVMREIARVLSDE 53 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~l~~~ 53 (241)
++|+||||+||||+++++++.+.+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~~ 73 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYGK 73 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCC
Confidence 8999999999999999999987543
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00043 Score=54.64 Aligned_cols=57 Identities=11% Similarity=0.091 Sum_probs=41.6
Q ss_pred hcCCCCCcccHHHHHHHHHhc----CCcEEEEcCCCCHHhHHHHH------HHHhCCcEEEEeecCC
Q 026207 83 RMQVPEPSLQHKVMIEAVENH----MPEVIIVDEIGTEAEAHACR------SIAERGVMLIGTAHGE 139 (241)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~----~p~vlilDE~~~~~d~~~~~------~~~~~g~~vi~t~H~~ 139 (241)
.+..+|+|.+++..++.++.. .|+++++|||++++|+.... .....+.++|+++|..
T Consensus 61 ~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~ 127 (173)
T 3kta_B 61 RIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRD 127 (173)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCH
T ss_pred ccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecH
Confidence 455678899999999998864 46999999999999995433 1122345677767764
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0004 Score=60.84 Aligned_cols=35 Identities=26% Similarity=0.322 Sum_probs=29.5
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
..++|+|+||+||||++..++..+... |.+|..++
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~~~-g~kV~vi~ 114 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLIER-GHRVAVLA 114 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhC-CCceEEEe
Confidence 479999999999999999999987654 67777665
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0003 Score=62.38 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=21.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
+++|.||||||||||++.+++..
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 89999999999999999999865
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00035 Score=55.39 Aligned_cols=23 Identities=22% Similarity=0.013 Sum_probs=21.1
Q ss_pred cEEEEEeCCCchHHHHHHHHHHh
Q 026207 27 DFFLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~ 49 (241)
-++.|+|++||||||+.+.|+..
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 37999999999999999999986
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00027 Score=54.40 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=20.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
.++|+|+||+|||||++.+++..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00031 Score=57.32 Aligned_cols=23 Identities=22% Similarity=0.121 Sum_probs=21.1
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
+++|.|+|||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999876
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00036 Score=56.39 Aligned_cols=21 Identities=29% Similarity=0.202 Sum_probs=20.0
Q ss_pred EEEEEeCCCchHHHHHHHHHH
Q 026207 28 FFLSYFRPGVGKTTVMREIAR 48 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~ 48 (241)
+++|+|++||||||+++.|+.
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999987
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00034 Score=55.70 Aligned_cols=24 Identities=25% Similarity=0.266 Sum_probs=22.1
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
++.|+|++||||||+.+.|+..+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999998763
|
| >1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00023 Score=57.83 Aligned_cols=24 Identities=8% Similarity=0.040 Sum_probs=22.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
.++|.||||+||||++.+++..+.
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999874
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00027 Score=59.06 Aligned_cols=26 Identities=35% Similarity=0.183 Sum_probs=23.3
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhcc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
...+.|+|++||||||+++.|++.+.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34899999999999999999999764
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00035 Score=57.84 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=21.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
.++|+|||||||||+.+.|+..+
T Consensus 31 ~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 31 RYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 69999999999999999999765
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00037 Score=56.46 Aligned_cols=23 Identities=26% Similarity=0.234 Sum_probs=21.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
.++|.|+|||||||+.+.|+..+
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999876
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00034 Score=56.44 Aligned_cols=22 Identities=23% Similarity=0.137 Sum_probs=20.5
Q ss_pred EEEEeCCCchHHHHHHHHHHhc
Q 026207 29 FLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~l 50 (241)
++|+|+|||||||+.+.|+..+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999866
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00037 Score=57.71 Aligned_cols=24 Identities=33% Similarity=0.405 Sum_probs=22.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
++.|.||+||||||+.+.|+..+.
T Consensus 11 ~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 799999999999999999998763
|
| >4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00062 Score=55.46 Aligned_cols=34 Identities=24% Similarity=0.200 Sum_probs=28.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
++.|.|++||||||+++.++..+... |..++...
T Consensus 8 ~i~~eG~~gsGKsT~~~~l~~~l~~~-~~~v~~~~ 41 (213)
T 4edh_A 8 FVTLEGPEGAGKSTNRDYLAERLRER-GIEVQLTR 41 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHc-CCCccccc
Confidence 79999999999999999999988654 56666554
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0005 Score=57.05 Aligned_cols=35 Identities=29% Similarity=0.343 Sum_probs=26.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcccc----CCCeEEEEc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDE----FQKRVVIVD 62 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~----~g~~v~~i~ 62 (241)
+|+|+|++||||||+.+.|+..+... .+..+..++
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~ 62 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILS 62 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEe
Confidence 79999999999999999999876422 123455665
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00047 Score=56.46 Aligned_cols=24 Identities=25% Similarity=0.272 Sum_probs=22.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
.++|.|+|||||||+.+.|+..+.
T Consensus 18 ~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 18 RAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 699999999999999999998763
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00043 Score=53.94 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=20.9
Q ss_pred cEEEEEeCCCchHHHHHHHHHHh
Q 026207 27 DFFLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~ 49 (241)
-.++|+|++|+|||||++.+++.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999974
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0004 Score=59.87 Aligned_cols=35 Identities=26% Similarity=0.503 Sum_probs=26.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcccc--CCCeEEEEc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDE--FQKRVVIVD 62 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~--~g~~v~~i~ 62 (241)
.++|+||||+||||+++.+++.+... ....+..++
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~ 96 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELN 96 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEc
Confidence 38999999999999999999987421 123455555
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00046 Score=53.58 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=20.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++|+|+||+|||||++.+++..
T Consensus 6 ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999853
|
| >1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0008 Score=55.63 Aligned_cols=35 Identities=29% Similarity=0.325 Sum_probs=30.7
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
..++++.|.+|+||||++..++..+. . |.++..++
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~-~-g~~v~vvd 48 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE-D-NYKVAYVN 48 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT-T-TSCEEEEE
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH-C-CCeEEEEe
Confidence 45899999999999999999999887 4 68888887
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00038 Score=54.49 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=20.1
Q ss_pred EEEEEeCCCchHHHHHHHHHHh
Q 026207 28 FFLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~ 49 (241)
-++|+|++|+|||||++.+++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999985
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00049 Score=58.93 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=23.1
Q ss_pred eccEEEEEeCCCchHHHHHHHHHHhc
Q 026207 25 IFDFFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 25 ~~g~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
..+.++|+|+||+|||||++.+++.-
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 45689999999999999999999863
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00062 Score=57.68 Aligned_cols=23 Identities=35% Similarity=0.382 Sum_probs=21.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
+++|.|+|||||||+.+.|+...
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 68999999999999999999853
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00097 Score=53.58 Aligned_cols=34 Identities=15% Similarity=0.069 Sum_probs=27.2
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
..++|+|++|+|||||++.++...... .++..++
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~~~--~~~~~i~ 64 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIGNE--VKIGAML 64 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTTT--SCEEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhccC--CeEEEEe
Confidence 479999999999999999999876443 4556554
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00068 Score=54.29 Aligned_cols=24 Identities=21% Similarity=0.104 Sum_probs=21.7
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++.|+|++||||||+.+.++..+
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 379999999999999999999864
|
| >2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00058 Score=58.74 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=22.8
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
+-++|.||||+|||++++.++..+.
T Consensus 47 ~~vll~G~pGtGKT~la~~la~~~~ 71 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVNTLAKTMD 71 (331)
T ss_dssp CCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhC
Confidence 4699999999999999999999874
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00067 Score=55.66 Aligned_cols=23 Identities=26% Similarity=0.160 Sum_probs=21.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
++.|+|+|||||||+.+.|++.+
T Consensus 18 ~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 18 QIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 79999999999999999999865
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00081 Score=58.31 Aligned_cols=32 Identities=22% Similarity=0.233 Sum_probs=26.3
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
.+++|+||+||||||+.+.|+..+. ..++..|
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~----~~iis~D 37 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP----CELISVD 37 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC----EEEEEEC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC----CcEEecc
Confidence 3799999999999999999999874 3455555
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00075 Score=51.22 Aligned_cols=23 Identities=13% Similarity=0.236 Sum_probs=20.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++++|++|+|||||++.+++..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998754
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00078 Score=50.90 Aligned_cols=23 Identities=17% Similarity=0.143 Sum_probs=20.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++++|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 38999999999999999998653
|
| >1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0011 Score=52.74 Aligned_cols=32 Identities=19% Similarity=0.162 Sum_probs=26.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCC
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTS 64 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~ 64 (241)
+++|+|++||||||+...++.. +.+++|+.+.
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~-----~~~~~yiaT~ 32 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD-----APQVLYIATS 32 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS-----CSSEEEEECC
T ss_pred CEEEECCCCCcHHHHHHHHHhc-----CCCeEEEecC
Confidence 4799999999999999999865 2467898843
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0008 Score=50.78 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=20.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++++|++|+|||||++.+++.-
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999754
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00082 Score=50.64 Aligned_cols=23 Identities=17% Similarity=0.187 Sum_probs=20.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++++|++|+|||||++.+++..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 38999999999999999998754
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00073 Score=57.98 Aligned_cols=28 Identities=18% Similarity=0.389 Sum_probs=24.5
Q ss_pred ceeeccEEEEEeCCCchHHHHHHHHHHh
Q 026207 22 NKIIFDFFLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 22 ~~~~~g~vll~Gp~GsGKTTLl~~l~~~ 49 (241)
.+-+.|+|+|+|+||+|||||++.+++.
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3457789999999999999999999975
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.72 E-value=0.00046 Score=58.85 Aligned_cols=35 Identities=17% Similarity=0.279 Sum_probs=24.4
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
-+++|+||+||||||+.+.++..+... +.++.+++
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~~-~~~~~vI~ 40 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRRE-GVKAVSIE 40 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHH-TCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhc-CCCeeEee
Confidence 379999999999999999999876533 34455665
|
| >3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.001 Score=62.06 Aligned_cols=36 Identities=19% Similarity=0.252 Sum_probs=30.2
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
.++++|+||||+||||++..++..+... +.+|+...
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~-g~~Vl~~A 239 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESL-GLEVGLCA 239 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhc-CCeEEEec
Confidence 4689999999999999999999887654 57777765
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00085 Score=52.55 Aligned_cols=24 Identities=13% Similarity=0.044 Sum_probs=21.7
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
.-++++|++|+|||||++.+++..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 369999999999999999999864
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00042 Score=63.75 Aligned_cols=41 Identities=15% Similarity=0.139 Sum_probs=30.0
Q ss_pred eEEEEEeEEeeCcc--eeeccEEEEEeCCCchHHHHHHHHHHhc
Q 026207 9 LLIVKFFYALYSIN--KIIFDFFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 9 ~~~~r~~~~~~~~~--~~~~g~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
++.++.+.. +... ....|+.+|+|+|||||||++.+|...+
T Consensus 42 ~L~i~nf~~-~~~~~l~f~~g~n~i~G~NGaGKS~lleAl~~ll 84 (517)
T 4ad8_A 42 RLEIRNLAT-ITQLELELGGGFCAFTGETGAGKSIIVDALGLLL 84 (517)
T ss_dssp EEEEESBTT-BSCEEEECCCSEEEEEESHHHHHHHHTHHHHHHT
T ss_pred eeecccccc-eeeEEEecCCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 345666653 3433 3344699999999999999999997764
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00092 Score=50.81 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=20.0
Q ss_pred EEEEeCCCchHHHHHHHHHHhc
Q 026207 29 FLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~l 50 (241)
++++|++|+|||||++.+.+.-
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHhCC
Confidence 7899999999999999998754
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00089 Score=50.62 Aligned_cols=23 Identities=17% Similarity=0.082 Sum_probs=20.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++++|++|+|||||++.+++.-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998753
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00092 Score=50.83 Aligned_cols=23 Identities=22% Similarity=0.195 Sum_probs=20.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++++|++|+|||||++.+.+.-
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998865
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0008 Score=56.43 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=21.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
-++|+|+||||||||++.+++...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 589999999999999999998643
|
| >3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0014 Score=54.30 Aligned_cols=36 Identities=17% Similarity=0.232 Sum_probs=28.8
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCe-EEEEc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKR-VVIVD 62 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~-v~~i~ 62 (241)
.-++.|.|++||||||+++.++..+... +.. +.+..
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~-~~~~~~~~r 63 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQN-GIDHITRTR 63 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHT-TCCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc-CCCeeeeec
Confidence 3489999999999999999999988654 555 55444
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.69 E-value=0.00085 Score=51.03 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=19.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHh
Q 026207 28 FFLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~ 49 (241)
-++++|++|+|||||++.+++.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999874
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.00097 Score=58.21 Aligned_cols=25 Identities=20% Similarity=0.190 Sum_probs=22.9
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
.+++|+||+||||||+.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 3799999999999999999999874
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.68 E-value=0.00093 Score=50.72 Aligned_cols=23 Identities=13% Similarity=0.121 Sum_probs=20.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++++|++|+|||||++.+.+.-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 38999999999999999998754
|
| >1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0009 Score=60.48 Aligned_cols=26 Identities=31% Similarity=0.381 Sum_probs=23.3
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhcc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
.+-++|+||||+||||++++++..+.
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l~ 75 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLAN 75 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHcC
Confidence 34699999999999999999999885
|
| >1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G | Back alignment and structure |
|---|
Probab=96.67 E-value=0.00054 Score=59.06 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=22.8
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
+-++|+||||+|||++++.++..+.
T Consensus 46 ~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 46 GGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred ceEEEECCCCccHHHHHHHHHHhCc
Confidence 3599999999999999999999875
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.00096 Score=51.23 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=20.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++++|++|+|||||++.+++.-
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998754
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.00082 Score=51.44 Aligned_cols=23 Identities=30% Similarity=0.287 Sum_probs=19.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++++|++|+|||||++.+.+.-
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 48999999999999999998643
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.00098 Score=50.73 Aligned_cols=23 Identities=17% Similarity=0.043 Sum_probs=20.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++++|++|+|||||++.+++.-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999999753
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=96.65 E-value=0.00099 Score=59.31 Aligned_cols=22 Identities=32% Similarity=0.232 Sum_probs=20.9
Q ss_pred cEEEEEeCCCchHHHHHHHHHH
Q 026207 27 DFFLSYFRPGVGKTTVMREIAR 48 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~ 48 (241)
..++|+|+||+|||||+++|++
T Consensus 21 ~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 21 LKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp CEEEEEECSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHC
Confidence 3799999999999999999999
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0018 Score=50.59 Aligned_cols=23 Identities=17% Similarity=0.159 Sum_probs=21.0
Q ss_pred cEEEEEeCCCchHHHHHHHHHHh
Q 026207 27 DFFLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~ 49 (241)
.-++++|++|+|||||++.+++.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999999875
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.001 Score=56.33 Aligned_cols=21 Identities=19% Similarity=0.195 Sum_probs=19.8
Q ss_pred EEEEEeCCCchHHHHHHHHHH
Q 026207 28 FFLSYFRPGVGKTTVMREIAR 48 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~ 48 (241)
+|+|+|++||||||+.+.|+.
T Consensus 77 iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999984
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0011 Score=51.08 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=20.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++++|++|+|||||++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998754
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0011 Score=50.25 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=20.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++++|++|+|||||++.+.+..
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999998743
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0017 Score=52.32 Aligned_cols=34 Identities=21% Similarity=0.236 Sum_probs=26.3
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
..++|+|++|+|||||++.++...... .++.++.
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~~~~--~~~~~i~ 72 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNLKDK--YKIACIA 72 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTTT--CCEEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhccC--CeEEEEE
Confidence 468999999999999999999876543 3444443
|
| >4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0013 Score=62.15 Aligned_cols=36 Identities=25% Similarity=0.251 Sum_probs=27.4
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
.++.+|.||||+|||+++-.+...+-.. +.+|+...
T Consensus 205 ~~~~lI~GPPGTGKT~ti~~~I~~l~~~-~~~ILv~a 240 (646)
T 4b3f_X 205 KELAIIHGPPGTGKTTTVVEIILQAVKQ-GLKVLCCA 240 (646)
T ss_dssp SSEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEc
Confidence 4689999999999999887666655444 46777665
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.00099 Score=54.57 Aligned_cols=25 Identities=16% Similarity=0.026 Sum_probs=22.1
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSD 52 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~ 52 (241)
-++|+|++|+|||||++.+++....
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~ 55 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVF 55 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCS
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcC
Confidence 5899999999999999999986543
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.00099 Score=50.75 Aligned_cols=22 Identities=23% Similarity=0.302 Sum_probs=19.2
Q ss_pred EEEEeCCCchHHHHHHHHHHhc
Q 026207 29 FLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~l 50 (241)
++++|++|+|||||++.+++..
T Consensus 5 i~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHHhcc
Confidence 7899999999999999997543
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0012 Score=50.13 Aligned_cols=22 Identities=14% Similarity=0.196 Sum_probs=20.1
Q ss_pred EEEEEeCCCchHHHHHHHHHHh
Q 026207 28 FFLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~ 49 (241)
-++++|++|+|||||++.+++.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0012 Score=57.64 Aligned_cols=25 Identities=16% Similarity=0.291 Sum_probs=22.9
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
.+++|+||+|||||||...|+..+.
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCC
Confidence 3899999999999999999999874
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0012 Score=50.62 Aligned_cols=22 Identities=18% Similarity=0.209 Sum_probs=20.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHh
Q 026207 28 FFLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~ 49 (241)
-++++|++|+|||||++.+++.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999886
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.00078 Score=51.19 Aligned_cols=21 Identities=38% Similarity=0.520 Sum_probs=19.0
Q ss_pred EEEEeCCCchHHHHHHHHHHh
Q 026207 29 FLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~ 49 (241)
++++|++|+|||||++.+++.
T Consensus 5 i~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHCCC
T ss_pred EEEECCCCCCHHHHHHHHcCc
Confidence 789999999999999998753
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0012 Score=53.37 Aligned_cols=24 Identities=25% Similarity=0.086 Sum_probs=21.5
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
..++|+||+|+|||||+..++...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 369999999999999999998764
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0014 Score=60.15 Aligned_cols=35 Identities=17% Similarity=0.187 Sum_probs=30.3
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
.+++|+|+||+||||++..|+..+... |.++..++
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA~~l~~~-G~kVllVd 136 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLAYYYQRK-GWKTCLIC 136 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEe
Confidence 379999999999999999999888755 67888776
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0012 Score=50.73 Aligned_cols=25 Identities=20% Similarity=0.057 Sum_probs=21.6
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
...++++|++|+|||||++.+++.-
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3468999999999999999998743
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0013 Score=51.41 Aligned_cols=23 Identities=13% Similarity=0.164 Sum_probs=20.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++++|++|+|||||++.+++.-
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999999863
|
| >4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.002 Score=52.48 Aligned_cols=35 Identities=20% Similarity=0.216 Sum_probs=27.9
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCC-eEEEEc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQK-RVVIVD 62 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-~v~~i~ 62 (241)
-+|.|.|++||||||+++.++..+... |. .+.+..
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~-~~~~v~~~r 39 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQL-GIRDMVFTR 39 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc-CCCcceeee
Confidence 379999999999999999999988655 44 454443
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0013 Score=50.95 Aligned_cols=23 Identities=17% Similarity=0.200 Sum_probs=20.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++++|++|+|||||++.+++.-
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 38999999999999999998754
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0014 Score=50.30 Aligned_cols=23 Identities=17% Similarity=0.122 Sum_probs=20.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++++|++|+|||||++.+++.-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998643
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0013 Score=50.06 Aligned_cols=22 Identities=27% Similarity=0.232 Sum_probs=20.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHh
Q 026207 28 FFLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~ 49 (241)
-++++|++|+|||||++.+.+.
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999764
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0011 Score=59.42 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=21.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
+++|+|+|||||||+.+.++..+
T Consensus 260 lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 260 VVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp EEEEESCTTSSHHHHHHHHTGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999998765
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0013 Score=51.04 Aligned_cols=23 Identities=35% Similarity=0.404 Sum_probs=20.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++|+|++|+|||||++.+++.-
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999743
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0013 Score=52.69 Aligned_cols=24 Identities=13% Similarity=0.044 Sum_probs=21.7
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
.-++++|++|+|||||++.+++..
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 469999999999999999999865
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0015 Score=56.28 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=22.7
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
.+++|+||+|||||||...++..+.
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCccCHHHHHHHHHHhCC
Confidence 4789999999999999999998874
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0012 Score=51.48 Aligned_cols=23 Identities=17% Similarity=0.135 Sum_probs=21.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++++|++|+|||||++.+.+.-
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 69999999999999999998764
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0015 Score=56.44 Aligned_cols=25 Identities=24% Similarity=0.191 Sum_probs=22.6
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
.+++|+||+|||||||...++..+.
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCc
Confidence 4789999999999999999998774
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0014 Score=50.39 Aligned_cols=23 Identities=17% Similarity=0.066 Sum_probs=20.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++++|++|+|||||++.+++.-
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 48999999999999999998653
|
| >3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0012 Score=54.36 Aligned_cols=35 Identities=26% Similarity=0.314 Sum_probs=25.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccC---CCeEEEEc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEF---QKRVVIVD 62 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~---g~~v~~i~ 62 (241)
++.|.|++||||||+++.|+..+.... |..+.+..
T Consensus 27 ~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~r 64 (227)
T 3v9p_A 27 FITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTR 64 (227)
T ss_dssp EEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeec
Confidence 799999999999999999999886431 45665554
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0011 Score=51.42 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=19.8
Q ss_pred EEEEeCCCchHHHHHHHHHHhc
Q 026207 29 FLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~l 50 (241)
++++|++|+|||||++.+++..
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCcC
Confidence 7899999999999999998753
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0014 Score=50.21 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=20.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++++|++|+|||||++.+.+.-
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998754
|
| >2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.50 E-value=0.002 Score=55.09 Aligned_cols=32 Identities=16% Similarity=0.137 Sum_probs=26.7
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
++++|+||+|+|||||++.++.... .++++++
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~----~~~~~~~ 62 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELN----LPYIYLD 62 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHT----CCEEEEE
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcC----CCEEEEE
Confidence 6999999999999999999998764 2356665
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0013 Score=57.69 Aligned_cols=24 Identities=25% Similarity=0.535 Sum_probs=22.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
.++|+|||||||||+.+.|++.+.
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHhC
Confidence 589999999999999999999875
|
| >1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0012 Score=56.00 Aligned_cols=24 Identities=46% Similarity=0.468 Sum_probs=22.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
.++|+||||+||||+++.++..+.
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHhc
Confidence 499999999999999999999864
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0015 Score=50.59 Aligned_cols=23 Identities=22% Similarity=0.327 Sum_probs=20.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++++|++|+|||||++.+.+.-
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998754
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0015 Score=49.44 Aligned_cols=22 Identities=23% Similarity=0.141 Sum_probs=19.7
Q ss_pred EEEEeCCCchHHHHHHHHHHhc
Q 026207 29 FLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~l 50 (241)
++++|++|+|||||++.+.+.-
T Consensus 3 i~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7899999999999999998643
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0015 Score=50.30 Aligned_cols=23 Identities=13% Similarity=0.169 Sum_probs=20.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++++|++|+|||||++.+++.-
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
|
| >3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0022 Score=51.42 Aligned_cols=36 Identities=25% Similarity=0.327 Sum_probs=29.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCC
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTS 64 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~ 64 (241)
+|.|-|+-||||||.++.|+..+... |.+++...++
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~-g~~v~~treP 37 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKR-GKKVILKREP 37 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEESS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCcEEEEECC
Confidence 57889999999999999999998765 6777766534
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0015 Score=50.44 Aligned_cols=23 Identities=17% Similarity=0.082 Sum_probs=20.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++++|++|+|||||++.+++.-
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 58999999999999999998743
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0014 Score=51.25 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=20.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++|+|++|+|||||++.+++.-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998754
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0015 Score=51.36 Aligned_cols=25 Identities=20% Similarity=0.109 Sum_probs=20.9
Q ss_pred eccEEEEEeCCCchHHHHHHHHHHh
Q 026207 25 IFDFFLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 25 ~~g~vll~Gp~GsGKTTLl~~l~~~ 49 (241)
...-++++|++|+|||||++.+++.
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3447899999999999999999974
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0018 Score=50.48 Aligned_cols=26 Identities=23% Similarity=0.132 Sum_probs=22.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDE 53 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~ 53 (241)
-++++|++|+|||||++.+.+.....
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~~ 41 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPEG 41 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHHhhcccc
Confidence 48999999999999999988876544
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.001 Score=51.16 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=19.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHh
Q 026207 28 FFLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~ 49 (241)
-++++|++|+|||||++.+++.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999764
|
| >3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0011 Score=59.80 Aligned_cols=24 Identities=25% Similarity=0.180 Sum_probs=20.7
Q ss_pred eccEEEEEeCCCchHHHHHHHHHH
Q 026207 25 IFDFFLSYFRPGVGKTTVMREIAR 48 (241)
Q Consensus 25 ~~g~vll~Gp~GsGKTTLl~~l~~ 48 (241)
...+.++.|+|||||||++..++.
T Consensus 160 ~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 160 SAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHCC
T ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Confidence 445899999999999999988764
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0023 Score=57.32 Aligned_cols=55 Identities=5% Similarity=0.063 Sum_probs=42.8
Q ss_pred CCCCCcccHHHHHHHHHh----cCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCC
Q 026207 85 QVPEPSLQHKVMIEAVEN----HMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGE 139 (241)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~----~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~ 139 (241)
..+|+|++++..++.++. .+|+++++|||.+.+|+.... .....|.++|+++|..
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~ 397 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN 397 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH
Confidence 346788999999999888 479999999999999995433 2222367899999974
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0038 Score=54.86 Aligned_cols=56 Identities=18% Similarity=0.003 Sum_probs=40.1
Q ss_pred CCCCCcccHHHH------HHHHHhcC-CcEEEEcCCCCHHhHHHHH---H-HH--hCCcEEEEeecCCC
Q 026207 85 QVPEPSLQHKVM------IEAVENHM-PEVIIVDEIGTEAEAHACR---S-IA--ERGVMLIGTAHGEW 140 (241)
Q Consensus 85 ~~~~~~~~~~~~------~~~~l~~~-p~vlilDE~~~~~d~~~~~---~-~~--~~g~~vi~t~H~~~ 140 (241)
...|+|++++.. ++.++..+ |+++++|||++++|+.... . .. ..+.++++++|...
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~ 347 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRE 347 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGG
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHH
Confidence 346778888764 44566778 9999999999999995443 1 11 23457899999853
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0017 Score=50.60 Aligned_cols=23 Identities=17% Similarity=0.135 Sum_probs=20.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++++|++|+|||||++.+++..
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0017 Score=50.00 Aligned_cols=23 Identities=22% Similarity=0.174 Sum_probs=20.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++++|++|+|||||++.+.+.-
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998754
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0016 Score=50.71 Aligned_cols=23 Identities=17% Similarity=0.187 Sum_probs=20.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++++|++|+|||||++.+++..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0017 Score=52.21 Aligned_cols=23 Identities=22% Similarity=0.195 Sum_probs=21.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
++.|+|++||||||+.+.++..+
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 68999999999999999999876
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0019 Score=50.75 Aligned_cols=23 Identities=17% Similarity=0.166 Sum_probs=20.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++++|++|+|||||++.+++.-
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998754
|
| >1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0046 Score=57.22 Aligned_cols=23 Identities=22% Similarity=0.219 Sum_probs=20.7
Q ss_pred cEEEEEeCCCchHHHHHHHHHHh
Q 026207 27 DFFLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~ 49 (241)
.+++|+||+|+|||||+..++..
T Consensus 148 ~~v~I~G~~GiGKTtLa~~~~~~ 170 (591)
T 1z6t_A 148 GWVTIHGMAGCGKSVLAAEAVRD 170 (591)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred ceEEEEcCCCCCHHHHHHHHHhc
Confidence 48999999999999999998754
|
| >3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0021 Score=59.00 Aligned_cols=26 Identities=15% Similarity=0.337 Sum_probs=23.3
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSD 52 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~ 52 (241)
+-++|.||||+|||++++.++..+..
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa~~l~~ 67 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLKFAFQN 67 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGGGGBSS
T ss_pred CeeEeecCchHHHHHHHHHHHHHHhh
Confidence 46999999999999999999998753
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0018 Score=50.05 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=20.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999999753
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0012 Score=51.48 Aligned_cols=23 Identities=26% Similarity=0.235 Sum_probs=20.6
Q ss_pred cEEEEEeCCCchHHHHHHHHHHh
Q 026207 27 DFFLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~ 49 (241)
--++++|++|+|||||++.+++.
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36999999999999999999865
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0018 Score=51.00 Aligned_cols=23 Identities=17% Similarity=0.082 Sum_probs=20.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++|+|++|+|||||++.+.+.-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998653
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0018 Score=50.54 Aligned_cols=23 Identities=26% Similarity=0.252 Sum_probs=20.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++|+|++|+|||||++.+++.-
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999999754
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0019 Score=51.04 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=20.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++|+|++|+|||||++.+++..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998764
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0019 Score=50.48 Aligned_cols=23 Identities=26% Similarity=0.140 Sum_probs=20.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++|+|++|+|||||++.+++.-
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.36 E-value=0.002 Score=50.45 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=20.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++++|++|+|||||++.+.+.-
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~~ 32 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKGT 32 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCcHHHHHHHHHcCC
Confidence 48999999999999999998743
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.002 Score=49.68 Aligned_cols=23 Identities=13% Similarity=0.028 Sum_probs=20.3
Q ss_pred cEEEEEeCCCchHHHHHHHHHHh
Q 026207 27 DFFLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~ 49 (241)
.-++++|++|+|||||++.+.+.
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999999853
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0016 Score=54.95 Aligned_cols=23 Identities=22% Similarity=0.125 Sum_probs=20.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
.++|+|+||+|||||++.+++..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999853
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=96.35 E-value=0.002 Score=49.77 Aligned_cols=23 Identities=17% Similarity=0.044 Sum_probs=20.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++++|++|+|||||++.+.+..
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~~ 29 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTNA 29 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998643
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0018 Score=55.47 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=22.3
Q ss_pred eccEEEEEeCCCchHHHHHHHHHHh
Q 026207 25 IFDFFLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 25 ~~g~vll~Gp~GsGKTTLl~~l~~~ 49 (241)
..+.++|+|.||+|||||++.+++.
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467999999999999999999975
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0023 Score=52.51 Aligned_cols=24 Identities=17% Similarity=0.148 Sum_probs=22.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
++.|.|++||||||+++.|+..+.
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHCT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999999884
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0021 Score=50.39 Aligned_cols=23 Identities=26% Similarity=0.156 Sum_probs=21.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++|+|++|+|||||++.+++.-
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 48999999999999999999865
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=96.34 E-value=0.002 Score=50.42 Aligned_cols=23 Identities=9% Similarity=-0.123 Sum_probs=20.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++|+|++|+|||||++.+++..
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 59999999999999998887753
|
| >4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0033 Score=50.72 Aligned_cols=35 Identities=29% Similarity=0.338 Sum_probs=28.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCC
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTS 64 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~ 64 (241)
+|.|-|+.||||||+++.|+..+.. +.+++...++
T Consensus 4 FI~~EG~dGsGKsTq~~~L~~~L~~--~~~v~~~~eP 38 (205)
T 4hlc_A 4 FITFEGPEGSGKTTVINEVYHRLVK--DYDVIMTREP 38 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTT--TSCEEEEESS
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHC--CCCEEEeeCC
Confidence 7899999999999999999998864 4666665433
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0021 Score=50.16 Aligned_cols=23 Identities=17% Similarity=0.067 Sum_probs=20.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++++|++|+|||||++.+.+.-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998643
|
| >3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0028 Score=57.31 Aligned_cols=37 Identities=16% Similarity=0.140 Sum_probs=29.1
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
.+.++|.|++|+||||++..++..+......+++.+.
T Consensus 45 ~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a 81 (459)
T 3upu_A 45 KHHVTINGPAGTGATTLTKFIIEALISTGETGIILAA 81 (459)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEec
Confidence 3599999999999999999999988655222566554
|
| >2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0055 Score=50.38 Aligned_cols=35 Identities=23% Similarity=0.117 Sum_probs=25.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNE 66 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e 66 (241)
-++++||+|+|||.+...++... +.+++++....+
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~----~~~~liv~P~~~ 144 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINEL----STPTLIVVPTLA 144 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHS----CSCEEEEESSHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHc----CCCEEEEeCCHH
Confidence 48999999999999988877765 245666653433
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0022 Score=50.73 Aligned_cols=23 Identities=17% Similarity=0.044 Sum_probs=21.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++|+|++|+|||||++.+++.-
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 59999999999999999999854
|
| >3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.002 Score=57.42 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=23.2
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhcc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
..+++|+||+|||||||...|+..+.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCC
Confidence 34789999999999999999998774
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0022 Score=50.01 Aligned_cols=24 Identities=21% Similarity=0.189 Sum_probs=21.2
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
--++++|++|+|||||++.+.+.-
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 358999999999999999998754
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0022 Score=50.78 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=20.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++|+|++|+|||||++.+.+.-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998754
|
| >2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0029 Score=59.54 Aligned_cols=37 Identities=24% Similarity=0.204 Sum_probs=28.3
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
.++.+|.||||+||||++..++..+....+.+|+...
T Consensus 195 ~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a 231 (624)
T 2gk6_A 195 RPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCA 231 (624)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEE
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 4589999999999999998888766442345666654
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.002 Score=53.82 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=20.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++++|+||||||||++.+++.-
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58899999999999999999863
|
| >4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0062 Score=48.11 Aligned_cols=34 Identities=35% Similarity=0.398 Sum_probs=28.2
Q ss_pred EEEE-eCCCchHHHHHHHHHHhccccCCCeEEEEcC
Q 026207 29 FLSY-FRPGVGKTTVMREIARVLSDEFQKRVVIVDT 63 (241)
Q Consensus 29 vll~-Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~ 63 (241)
+.++ +..|+||||+...++..+... |.+|+.+|-
T Consensus 4 i~v~s~kgG~GKTt~a~~la~~la~~-g~~vlliD~ 38 (206)
T 4dzz_A 4 ISFLNPKGGSGKTTAVINIATALSRS-GYNIAVVDT 38 (206)
T ss_dssp EEECCSSTTSSHHHHHHHHHHHHHHT-TCCEEEEEC
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHHC-CCeEEEEEC
Confidence 4444 678899999999999999875 889999983
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.28 E-value=0.002 Score=50.79 Aligned_cols=23 Identities=26% Similarity=0.130 Sum_probs=20.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++|+|++|+|||||++.+++.-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998754
|
| >2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0025 Score=54.44 Aligned_cols=24 Identities=21% Similarity=0.182 Sum_probs=22.2
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
++++|+||+|+|||||++.++...
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~ 55 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNER 55 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHS
T ss_pred CeEEEECCCcCCHHHHHHHHHHHc
Confidence 689999999999999999998865
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0023 Score=50.09 Aligned_cols=23 Identities=26% Similarity=-0.038 Sum_probs=20.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++++|++|+|||||++.+++.-
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998743
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0013 Score=52.25 Aligned_cols=22 Identities=18% Similarity=0.158 Sum_probs=19.8
Q ss_pred cEEEEEeCCCchHHHHHHHHHH
Q 026207 27 DFFLSYFRPGVGKTTVMREIAR 48 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~ 48 (241)
.-++++|++|+|||||++.+++
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999999875
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0023 Score=49.27 Aligned_cols=23 Identities=17% Similarity=0.079 Sum_probs=20.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++++|++|+|||||++.+.+.-
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998753
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0023 Score=50.31 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=20.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++++|++|+|||||++.+++.-
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 59999999999999999998753
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0023 Score=50.53 Aligned_cols=22 Identities=32% Similarity=0.292 Sum_probs=20.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHh
Q 026207 28 FFLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~ 49 (241)
-++|+|++|+|||||++.+++.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999864
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0023 Score=50.11 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=20.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++++|++|+|||||++.+.+.-
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998754
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0018 Score=50.34 Aligned_cols=24 Identities=21% Similarity=0.116 Sum_probs=21.0
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
--++++|++|+|||||++.+.+.-
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998644
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0012 Score=59.31 Aligned_cols=23 Identities=17% Similarity=0.174 Sum_probs=21.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
.+.|+|+||||||||++++++..
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEEECCCCCcHHHHHHHHHcCC
Confidence 58999999999999999999874
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.012 Score=55.73 Aligned_cols=109 Identities=13% Similarity=-0.002 Sum_probs=56.6
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccc--cCCCeEEEEcCCcccCC--------C-CCCcccc-ccc-hhhcCCC--CCcc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSD--EFQKRVVIVDTSNEIGG--------D-GDIPHSA-IGT-ARRMQVP--EPSL 91 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~--~~g~~v~~i~~~~e~~~--------~-~~~~~~~-~~~-~~~~~~~--~~~~ 91 (241)
..++|+|++|+|||||++.+++.... ..| .+ .++..... . ....+.. +.. ...+.+. .+..
T Consensus 10 ~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G-~V---~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~ 85 (665)
T 2dy1_A 10 RTVALVGHAGSGKTTLTEALLYKTGAKERRG-RV---EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYG 85 (665)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSSSSCC-CG---GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSG
T ss_pred cEEEEECCCCChHHHHHHHHHHhcCCCCccc-ee---cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCcc
Confidence 36999999999999999999976543 111 11 11111100 0 0000000 000 0011111 1112
Q ss_pred cH-HHHHHHHHhcCCcEEEEcCCCCHHhHH---HHHHHHhCCcEEEEeecCCC
Q 026207 92 QH-KVMIEAVENHMPEVIIVDEIGTEAEAH---ACRSIAERGVMLIGTAHGEW 140 (241)
Q Consensus 92 ~~-~~~~~~~l~~~p~vlilDE~~~~~d~~---~~~~~~~~g~~vi~t~H~~~ 140 (241)
.+ ......+...+..++++| +..+.+.. ....+...+..++...|-.+
T Consensus 86 ~f~~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD 137 (665)
T 2dy1_A 86 DFVGEIRGALEAADAALVAVS-AEAGVQVGTERAWTVAERLGLPRMVVVTKLD 137 (665)
T ss_dssp GGHHHHHHHHHHCSEEEEEEE-TTTCSCHHHHHHHHHHHHTTCCEEEEEECGG
T ss_pred chHHHHHHHHhhcCcEEEEEc-CCcccchhHHHHHHHHHHccCCEEEEecCCc
Confidence 22 334555556788899999 65555553 33345556888777777665
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0015 Score=50.41 Aligned_cols=21 Identities=29% Similarity=0.289 Sum_probs=19.1
Q ss_pred EEEEEeCCCchHHHHHHHHHH
Q 026207 28 FFLSYFRPGVGKTTVMREIAR 48 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~ 48 (241)
-++++|++|+|||||++.+.+
T Consensus 20 ~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 20 RILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 699999999999999998874
|
| >1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0026 Score=53.63 Aligned_cols=26 Identities=19% Similarity=0.233 Sum_probs=22.9
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhcc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
..-++|.||||+|||+++++++....
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~ 129 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhc
Confidence 34699999999999999999999754
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0024 Score=50.42 Aligned_cols=23 Identities=13% Similarity=0.137 Sum_probs=20.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++|+|++|+|||||++.+++.-
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 59999999999999999998754
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0024 Score=50.61 Aligned_cols=23 Identities=22% Similarity=0.206 Sum_probs=20.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++|+|++|+|||||++.+++.-
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998643
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0019 Score=49.66 Aligned_cols=23 Identities=9% Similarity=-0.019 Sum_probs=20.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++++|++|+|||||++.+++.-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTGS 31 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999998753
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=96.23 E-value=0.002 Score=57.97 Aligned_cols=23 Identities=30% Similarity=0.287 Sum_probs=21.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++|+|+||+|||||++.+++..
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred eEEEECCCCCCHHHHHHHHhCCc
Confidence 58999999999999999999874
|
| >3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0027 Score=50.19 Aligned_cols=24 Identities=13% Similarity=-0.039 Sum_probs=20.9
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHh
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~ 49 (241)
..-++|.|++|+||||++..+...
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 336999999999999999998873
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0024 Score=49.71 Aligned_cols=23 Identities=17% Similarity=0.122 Sum_probs=20.4
Q ss_pred cEEEEEeCCCchHHHHHHHHHHh
Q 026207 27 DFFLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~ 49 (241)
--++++|++|+|||||++.+.+.
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999853
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=96.22 E-value=0.002 Score=56.70 Aligned_cols=24 Identities=13% Similarity=0.061 Sum_probs=20.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
.++|+|+||+|||||++.+++...
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~ 204 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQ 204 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc
Confidence 589999999999999999998654
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0026 Score=49.90 Aligned_cols=23 Identities=17% Similarity=0.105 Sum_probs=20.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++++|++|+|||||++.+++.-
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 59999999999999999999854
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0026 Score=50.71 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=20.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++|+|++|+|||||++.+++..
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 48999999999999999998754
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0024 Score=52.87 Aligned_cols=24 Identities=21% Similarity=0.152 Sum_probs=21.3
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
.-++|+|++|+|||||++.+++.-
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 369999999999999999998753
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0027 Score=49.73 Aligned_cols=23 Identities=17% Similarity=0.135 Sum_probs=20.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++++|++|+|||||++.+++.-
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 49999999999999999998754
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0027 Score=50.75 Aligned_cols=23 Identities=17% Similarity=0.135 Sum_probs=20.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++++|++|+|||||++.+++.-
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999854
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 241 | ||||
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 4e-06 |
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.9 bits (102), Expect = 4e-06
Identities = 28/167 (16%), Positives = 53/167 (31%), Gaps = 6/167 (3%)
Query: 34 RPGVGKTTVMREIARVLSDEFQK-RVVIVDTSNEIGGD-GDIPHSAIGTARRMQVPEPSL 91
PGVGKTT++ + + VL + + G G + GT +
Sbjct: 9 PPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRVGLEP 68
Query: 92 QHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAE-RGVMLIGTAHGEWLENIIKNPIL 150
V ++ ++ +++ +A S + V +I L + + +
Sbjct: 69 PPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAV 128
Query: 151 SDLIGGVDTVTLGDEEARARRCQ---KSILERKAPPTFYFLIEMRER 194
+ T+ LG + + I RK F E R
Sbjct: 129 RQTLSTPGTIILGTIPVPKGKPLALVEEIRNRKDVKVFNVTKENRNH 175
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 241 | |||
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 99.85 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 99.84 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 99.84 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 99.82 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 99.81 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 99.81 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 99.8 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 99.8 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 99.79 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 99.79 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 99.78 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 99.76 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 99.75 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 99.71 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 99.69 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 99.69 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 99.68 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 99.67 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 99.65 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 99.64 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 99.64 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 99.57 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.37 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 99.15 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.1 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 98.98 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 98.92 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 98.74 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 98.71 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 98.7 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 98.66 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 98.64 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 98.62 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 98.59 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 98.54 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 98.52 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 98.45 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 98.44 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 98.42 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 98.32 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 98.32 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 98.31 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 98.21 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 98.19 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 98.19 | |
| d1xbta1 | 133 | Thymidine kinase, TK1, N-terminal domain {Human (H | 98.19 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 98.16 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 98.12 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 98.12 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 98.1 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 98.1 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 98.09 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 98.08 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 98.08 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 98.05 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 98.04 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 98.0 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.97 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 97.97 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 97.96 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 97.96 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 97.95 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 97.92 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 97.9 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 97.87 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 97.87 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 97.87 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 97.84 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 97.84 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.84 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 97.84 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 97.84 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 97.82 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 97.82 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 97.8 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 97.79 | |
| d1xx6a1 | 141 | Thymidine kinase, TK1, N-terminal domain {Clostrid | 97.79 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 97.77 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 97.75 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 97.71 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 97.69 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 97.68 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 97.65 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 97.64 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 97.63 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 97.63 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 97.58 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 97.57 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 97.56 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 97.55 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 97.53 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 97.52 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 97.52 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 97.51 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 97.5 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 97.5 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 97.5 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 97.49 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 97.48 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 97.47 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 97.46 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 97.45 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.45 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 97.44 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 97.44 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 97.42 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 97.41 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 97.4 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 97.4 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 97.39 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 97.35 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 97.34 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 97.31 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 97.31 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 97.31 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 97.31 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 97.29 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 97.26 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 97.26 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 97.24 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 97.24 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 97.21 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 97.18 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 97.15 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 97.1 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 97.07 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 97.06 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 97.06 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 97.03 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 97.03 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 97.02 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 97.01 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 97.01 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 97.01 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 97.01 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 97.01 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 97.01 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 96.97 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 96.93 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 96.92 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 96.91 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 96.9 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 96.89 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 96.89 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.87 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 96.84 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 96.8 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 96.77 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 96.75 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 96.74 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 96.72 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.68 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 96.66 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 96.66 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 96.63 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 96.62 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 96.6 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 96.58 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 96.57 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 96.56 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 96.55 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 96.55 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 96.55 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 96.54 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 96.53 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 96.53 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 96.51 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 96.5 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 96.49 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 96.46 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 96.45 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 96.45 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 96.45 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 96.44 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 96.42 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 96.41 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 96.41 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 96.4 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 96.39 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 96.38 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 96.37 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 96.37 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 96.37 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 96.35 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 96.35 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 96.34 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 96.33 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 96.33 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.33 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 96.32 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 96.31 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 96.31 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 96.29 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 96.27 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 96.27 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 96.26 | |
| d1g5ta_ | 157 | ATP:corrinoid adenosyltransferase CobA {Salmonella | 96.25 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 96.2 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 96.18 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 96.18 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 96.16 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 96.15 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 96.15 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 96.14 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 96.14 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 96.12 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 96.11 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 96.09 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 96.08 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 96.05 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 96.03 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 96.01 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 96.0 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 96.0 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 95.99 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 95.99 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 95.94 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 95.92 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 95.91 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 95.9 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 95.88 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 95.79 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 95.77 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 95.77 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 95.76 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 95.66 | |
| d1byia_ | 224 | Dethiobiotin synthetase {Escherichia coli [TaxId: | 95.64 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 95.63 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 95.61 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 95.61 | |
| d1ihua1 | 296 | Arsenite-translocating ATPase ArsA {Escherichia co | 95.52 | |
| d1ihua2 | 279 | Arsenite-translocating ATPase ArsA {Escherichia co | 95.48 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 95.47 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 95.44 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 95.43 | |
| d2fz4a1 | 206 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 95.27 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 95.23 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 95.16 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 95.03 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 95.02 | |
| d1cp2a_ | 269 | Nitrogenase iron protein {Clostridium pasteurianum | 94.76 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 94.74 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 94.71 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 94.6 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 94.59 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 94.59 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 94.43 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 94.3 | |
| d1hyqa_ | 232 | Cell division regulator MinD {Archaeon Archaeoglob | 94.01 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 93.98 | |
| d1g3qa_ | 237 | Cell division regulator MinD {Archaeon Pyrococcus | 93.79 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 93.71 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 93.69 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 93.67 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 93.58 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 93.58 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 93.57 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 93.57 | |
| d2afhe1 | 289 | Nitrogenase iron protein {Azotobacter vinelandii [ | 93.54 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 93.0 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 92.28 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 92.26 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 91.9 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 91.86 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 91.54 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 91.49 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 91.45 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 90.1 | |
| g1qhh.1 | 623 | DEXX box DNA helicase {Bacillus stearothermophilus | 89.86 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 89.78 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 89.15 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 89.0 | |
| d1c9ka_ | 180 | Adenosylcobinamide kinase/adenosylcobinamide phosp | 87.87 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 87.8 | |
| d1lkxa_ | 684 | Myosin S1, motor domain {Dictyostelium discoideum, | 87.31 | |
| d1d0xa2 | 712 | Myosin S1, motor domain {Dictyostelium discoideum | 86.99 | |
| d1br2a2 | 710 | Myosin S1, motor domain {Chicken (Gallus gallus), | 86.67 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 86.64 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 86.56 | |
| d2mysa2 | 794 | Myosin S1, motor domain {Chicken (Gallus gallus), | 86.34 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 85.51 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 85.42 | |
| d1kk8a2 | 789 | Myosin S1, motor domain {Bay scallop (Aequipecten | 84.81 | |
| d1w36b1 | 485 | Exodeoxyribonuclease V beta chain (RecB), N-termin | 84.74 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 84.67 | |
| d1w7ja2 | 730 | Myosin S1, motor domain {Chicken (Gallus gallus), | 84.38 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 83.51 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 83.18 | |
| d1rifa_ | 282 | DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] | 81.06 |
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=99.85 E-value=1.6e-22 Score=167.74 Aligned_cols=165 Identities=16% Similarity=0.170 Sum_probs=113.2
Q ss_pred EEEEeEEeeCcceeecc---------EEEEEeCCCchHHHHHHHHHHhccccCCC-----------------eEEEEcCC
Q 026207 11 IVKFFYALYSINKIIFD---------FFLSYFRPGVGKTTVMREIARVLSDEFQK-----------------RVVIVDTS 64 (241)
Q Consensus 11 ~~r~~~~~~~~~~~~~g---------~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-----------------~v~~i~~~ 64 (241)
.++.++..|+...+..+ ++.|.||||||||||++++++.+.|+.|. .+.|+.+.
T Consensus 4 ~v~nl~k~yg~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i~~vpq~ 83 (238)
T d1vpla_ 4 VVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEE 83 (238)
T ss_dssp EEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTT
T ss_pred EEEeEEEEECCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccChHHHHhhEeEeeec
Confidence 45555666776655555 69999999999999999999999988433 22333322
Q ss_pred cccCCCCCCccc-------------c----c-------c----chhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCH
Q 026207 65 NEIGGDGDIPHS-------------A----I-------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTE 116 (241)
Q Consensus 65 ~e~~~~~~~~~~-------------~----~-------~----~~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~ 116 (241)
..+......... . . + .-.+...+|++++|+..+++++.++|+++++|||+++
T Consensus 84 ~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p~illLDEPt~g 163 (238)
T d1vpla_ 84 AGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSG 163 (238)
T ss_dssp CCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred cccCCCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCC
Confidence 211110000000 0 0 0 0012445677889999999999999999999999999
Q ss_pred HhHHHH-------HHHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe-CChHHHHHHHHHhhhccCCCCCce
Q 026207 117 AEAHAC-------RSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL-GDEEARARRCQKSILERKAPPTFY 186 (241)
Q Consensus 117 ~d~~~~-------~~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~-~~~~~~~~~~~~~~k~r~g~~~~~ 186 (241)
+|+... ....+.|.+++.++|..+ .+..+ ||+|++ .++.....+.++++++++...+..
T Consensus 164 LD~~~~~~i~~~i~~~~~~g~tii~~tH~l~--------~~~~~---~drv~vl~~G~iv~~g~~~el~~~~~~~~~~ 230 (238)
T d1vpla_ 164 LDVLNAREVRKILKQASQEGLTILVSSHNML--------EVEFL---CDRIALIHNGTIVETGTVEELKERYKAQNIE 230 (238)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCEEEEEECCHH--------HHTTT---CSEEEEEETTEEEEEEEHHHHHHHTTCSSHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--------HHHHh---CCEEEEEECCEEEEEcCHHHHHhccCCchHH
Confidence 999433 345567999999999997 77888 999988 555444447777777766555443
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.84 E-value=2e-21 Score=160.65 Aligned_cols=153 Identities=14% Similarity=0.125 Sum_probs=103.5
Q ss_pred EEEeEEeeCcceeecc---------EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC-------CCCcc
Q 026207 12 VKFFYALYSINKIIFD---------FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD-------GDIPH 75 (241)
Q Consensus 12 ~r~~~~~~~~~~~~~g---------~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~-------~~~~~ 75 (241)
++.++..|+....+.+ ++.|+||||||||||++++++.++|+.|. ++++ +.++... +.+++
T Consensus 9 v~nlsk~yg~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~--I~i~-g~~i~~~~~~~r~ig~v~Q 85 (239)
T d1v43a3 9 LENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGR--IYFG-DRDVTYLPPKDRNISMVFQ 85 (239)
T ss_dssp EEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEE--EEET-TEECTTSCGGGGTEEEEEC
T ss_pred EEEEEEEECCEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCE--EEEc-ceecccCCcccceEEEEee
Confidence 4445556666544443 79999999999999999999999988543 3333 2211100 00010
Q ss_pred c-----------cc-------c------------------c----hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCC
Q 026207 76 S-----------AI-------G------------------T----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGT 115 (241)
Q Consensus 76 ~-----------~~-------~------------------~----~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~ 115 (241)
. ++ + . -+....+|+|++|++.+++++.++|++|++|||++
T Consensus 86 ~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~iLllDEPts 165 (239)
T d1v43a3 86 SYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLS 165 (239)
T ss_dssp ------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTT
T ss_pred chhhcccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHhhhccCCCceeecCCcc
Confidence 0 00 0 0 01234467899999999999999999999999999
Q ss_pred HHhHHHHH-------HH-HhCCcEEEEeecCCChhhhhcCCccccccccccEEEe-CChHHHHHHHHHhhhc
Q 026207 116 EAEAHACR-------SI-AERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL-GDEEARARRCQKSILE 178 (241)
Q Consensus 116 ~~d~~~~~-------~~-~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~-~~~~~~~~~~~~~~k~ 178 (241)
++|+.... .. .+.|+|++.++|... .+..+ ||+|++ .++.....+..+++.+
T Consensus 166 ~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~--------~a~~~---~dri~vm~~G~iv~~G~~~el~~ 226 (239)
T d1v43a3 166 NLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV--------EAMTM---GDRIAVMNRGQLLQIGSPTEVYL 226 (239)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH--------HHHHH---CSEEEEEETTEEEEEECHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHH--------HHHHh---CCEEEEEECCEEEEEcCHHHHHh
Confidence 99994332 33 456999999999997 66777 999988 5544433355555544
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=99.84 E-value=3.1e-22 Score=166.25 Aligned_cols=138 Identities=12% Similarity=0.084 Sum_probs=93.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC-------------------eEEEEcCCcccCCCCCCccc------------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK-------------------RVVIVDTSNEIGGDGDIPHS------------ 76 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-------------------~v~~i~~~~e~~~~~~~~~~------------ 76 (241)
++.|+||||||||||++++++.++++.|. .+.|+.+...+.....+...
T Consensus 34 i~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~~~ 113 (240)
T d1ji0a_ 34 IVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKE 113 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHhcccccCcccccCCcccHHHHHHHHHHhcCCHH
Confidence 79999999999999999999999887433 13344322211111000000
Q ss_pred c--------c----cc----hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHH-------HHHHhCCcEEE
Q 026207 77 A--------I----GT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC-------RSIAERGVMLI 133 (241)
Q Consensus 77 ~--------~----~~----~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~-------~~~~~~g~~vi 133 (241)
. . +. ......+|+|++|++.+++++.++|+++|+|||++++|+... .+.++.|.+++
T Consensus 114 ~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til 193 (240)
T d1ji0a_ 114 GIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTIL 193 (240)
T ss_dssp HHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHhhChHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 0 0 00 001234677889999999999999999999999999999443 34556799999
Q ss_pred EeecCCChhhhhcCCccccccccccEEEe-CChHHHHHHHHHhh
Q 026207 134 GTAHGEWLENIIKNPILSDLIGGVDTVTL-GDEEARARRCQKSI 176 (241)
Q Consensus 134 ~t~H~~~~~~~~~~p~l~~l~~~~d~V~~-~~~~~~~~~~~~~~ 176 (241)
.++|..+ .+..+ ||+|++ .++.....+..+++
T Consensus 194 ~~tH~l~--------~~~~~---~drv~vl~~G~iv~~g~~~el 226 (240)
T d1ji0a_ 194 LVEQNAL--------GALKV---AHYGYVLETGQIVLEGKASEL 226 (240)
T ss_dssp EEESCHH--------HHHHH---CSEEEEEETTEEEEEEEHHHH
T ss_pred EEeCCHH--------HHHHh---CCEEEEEECCEEEEEcCHHHH
Confidence 9999987 66777 999987 44433323344443
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=99.82 E-value=3.2e-21 Score=158.49 Aligned_cols=162 Identities=14% Similarity=0.170 Sum_probs=107.6
Q ss_pred CccccceeeEEEEEeEEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC-------
Q 026207 1 MLRLRNVFLLIVKFFYALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD------- 70 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~------- 70 (241)
||+++|+++- +-...+..+ .+..| ++.|+||||||||||++++++...|+.|. ++++ +.++...
T Consensus 1 mi~v~nlsk~---y~~~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~--I~~~-G~~i~~~~~~~r~i 74 (229)
T d3d31a2 1 MIEIESLSRK---WKNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGR--ILLD-GKDVTDLSPEKHDI 74 (229)
T ss_dssp CEEEEEEEEE---CSSCEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEE--EEET-TEECTTSCHHHHTC
T ss_pred CEEEEEEEEE---eCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCE--EEEc-cEeccccchhHhcc
Confidence 7888888632 111112211 23333 89999999999999999999999888554 4444 3322110
Q ss_pred CCCc-------cc----cccc--------------------------hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCC
Q 026207 71 GDIP-------HS----AIGT--------------------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEI 113 (241)
Q Consensus 71 ~~~~-------~~----~~~~--------------------------~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~ 113 (241)
+.++ +. ++.. -.....+|+|++|++.+++++.++|+++++|||
T Consensus 75 g~v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~iLllDEP 154 (229)
T d3d31a2 75 AFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEP 154 (229)
T ss_dssp EEECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESS
T ss_pred eeeccccccCccccHHHHHHHHHhhccccHHHHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhhhccCCceeecCC
Confidence 0001 10 0000 011234677889999999999999999999999
Q ss_pred CCHHhHHHHH-------HH-HhCCcEEEEeecCCChhhhhcCCccccccccccEEEe-CChHHHHHHHHHhhhcc
Q 026207 114 GTEAEAHACR-------SI-AERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL-GDEEARARRCQKSILER 179 (241)
Q Consensus 114 ~~~~d~~~~~-------~~-~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~-~~~~~~~~~~~~~~k~r 179 (241)
++++|+.... .. ++.|.++|.++|... .+.++ ||+|++ .++.....+..+++.++
T Consensus 155 ts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~--------~~~~~---~drv~vm~~G~iv~~g~~~el~~~ 218 (229)
T d3d31a2 155 LSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT--------EARIM---ADRIAVVMDGKLIQVGKPEEIFEK 218 (229)
T ss_dssp STTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH--------HHHHH---CSEEEEESSSCEEEEECHHHHHSS
T ss_pred CcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHH--------HHHHh---CCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999994332 33 456999999999997 67777 999998 55544444666666543
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.81 E-value=1.7e-20 Score=154.41 Aligned_cols=139 Identities=18% Similarity=0.152 Sum_probs=83.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC----------------eEEEEcCCcccCCCCCCcc------ccccc-----
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK----------------RVVIVDTSNEIGGDGDIPH------SAIGT----- 80 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------~v~~i~~~~e~~~~~~~~~------~~~~~----- 80 (241)
++.|.||||||||||++++++..+++.|. ++.++.+...+.....+.. ...+.
T Consensus 28 i~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~ 107 (232)
T d2awna2 28 FVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVI 107 (232)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCEEEECSSCCC---------------------CHH
T ss_pred EEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCchhhceeeeeccccccccchhHHHHHHHHHHHcCCCHHHH
Confidence 79999999999999999999999887432 2333332221111000000 00000
Q ss_pred -----------------hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------H-HHhCCcEEEEe
Q 026207 81 -----------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------S-IAERGVMLIGT 135 (241)
Q Consensus 81 -----------------~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~-~~~~g~~vi~t 135 (241)
-+....+|+|++|++.+++++.++|+++++|||++++|+.... . ..+.|.|+|.+
T Consensus 108 ~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~v 187 (232)
T d2awna2 108 NQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYV 187 (232)
T ss_dssp HHHHHHHHHHC---------------------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEE
T ss_pred HHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 0123346788999999999999999999999999999995332 3 24569999999
Q ss_pred ecCCChhhhhcCCccccccccccEEEe-CChHHHHHHHHHhhh
Q 026207 136 AHGEWLENIIKNPILSDLIGGVDTVTL-GDEEARARRCQKSIL 177 (241)
Q Consensus 136 ~H~~~~~~~~~~p~l~~l~~~~d~V~~-~~~~~~~~~~~~~~k 177 (241)
+|... .+..+ ||+|++ .++.....+.++++.
T Consensus 188 THd~~--------~a~~~---~dri~vm~~G~iv~~G~~~el~ 219 (232)
T d2awna2 188 THDQV--------EAMTL---ADKIVVLDAGRVAQVGKPLELY 219 (232)
T ss_dssp ESCHH--------HHHHH---CSEEEEEETTEEEEEECHHHHH
T ss_pred eCCHH--------HHHHh---CCEEEEEECCEEEEEeCHHHHH
Confidence 99997 67777 999988 444332234444443
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.81 E-value=7e-21 Score=159.36 Aligned_cols=140 Identities=19% Similarity=0.232 Sum_probs=98.2
Q ss_pred CccccceeeEEEEEeEEeeCcceeecc---------EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC-
Q 026207 1 MLRLRNVFLLIVKFFYALYSINKIIFD---------FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD- 70 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~~~~~g---------~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~- 70 (241)
||+++|++ ..|+....+.+ ++.|+||||||||||++++++.++++.|. ++++ +.++...
T Consensus 4 iL~v~nls--------k~yg~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~--I~~~-g~~i~~~~ 72 (254)
T d1g6ha_ 4 ILRTENIV--------KYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGR--VYFE-NKDITNKE 72 (254)
T ss_dssp EEEEEEEE--------EEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEE--EEET-TEECTTCC
T ss_pred eEEEEEEE--------EEECCeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcE--EEEC-CEeccchh
Confidence 56777774 34454443333 79999999999999999999999988443 3333 2221100
Q ss_pred ---------CCCccc-----------c--cc--------------------------ch--------------hhcCCCC
Q 026207 71 ---------GDIPHS-----------A--IG--------------------------TA--------------RRMQVPE 88 (241)
Q Consensus 71 ---------~~~~~~-----------~--~~--------------------------~~--------------~~~~~~~ 88 (241)
..+++. + ++ .+ .....+|
T Consensus 73 ~~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS 152 (254)
T d1g6ha_ 73 PAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELS 152 (254)
T ss_dssp HHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSC
T ss_pred HHHHHHhcCCccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchhhCC
Confidence 000000 0 00 00 1233467
Q ss_pred CcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHH-------HHHHhCCcEEEEeecCCChhhhhcCCccccccccccEEE
Q 026207 89 PSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC-------RSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVT 161 (241)
Q Consensus 89 ~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~-------~~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~ 161 (241)
++++|++.+++++.++|+++|+|||++++|+... ...++.|++++.++|..+ .+..+ ||+|+
T Consensus 153 gG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~--------~~~~~---~Drv~ 221 (254)
T d1g6ha_ 153 GGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD--------IVLNY---IDHLY 221 (254)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS--------TTGGG---CSEEE
T ss_pred cHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH--------HHHHh---CCEEE
Confidence 7889999999999999999999999999999433 345677999999999998 78888 99998
Q ss_pred e
Q 026207 162 L 162 (241)
Q Consensus 162 ~ 162 (241)
+
T Consensus 222 v 222 (254)
T d1g6ha_ 222 V 222 (254)
T ss_dssp E
T ss_pred E
Confidence 7
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=99.80 E-value=3.3e-20 Score=153.47 Aligned_cols=139 Identities=17% Similarity=0.168 Sum_probs=92.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC----------------------eEEEEcCCcccCCCCCCcccc------cc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK----------------------RVVIVDTSNEIGGDGDIPHSA------IG 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------------~v~~i~~~~e~~~~~~~~~~~------~~ 79 (241)
++.|+||||||||||++++++..+|+.|. ++.++.+...+.....+.... .+
T Consensus 31 ~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~ 110 (240)
T d1g2912 31 FMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRK 110 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTT
T ss_pred EEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhcccccccceecccchhhcchhhhhHhhhhhHHHcC
Confidence 79999999999999999999999987432 223332221111100000000 00
Q ss_pred ------------------c----hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HH-HhCC
Q 026207 80 ------------------T----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SI-AERG 129 (241)
Q Consensus 80 ------------------~----~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~-~~~g 129 (241)
. ..+...+|+|++|++.+++++.++|+++++|||++++|+.... .. .+.|
T Consensus 111 ~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g 190 (240)
T d1g2912 111 VPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLG 190 (240)
T ss_dssp CCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccC
Confidence 0 0112346778899999999999999999999999999995432 33 3459
Q ss_pred cEEEEeecCCChhhhhcCCccccccccccEEEe-CChHHHHHHHHHhhh
Q 026207 130 VMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL-GDEEARARRCQKSIL 177 (241)
Q Consensus 130 ~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~-~~~~~~~~~~~~~~k 177 (241)
.++|+++|..+ .+.++ ||+|++ .++.....+..+++.
T Consensus 191 ~tvi~vTHd~~--------~~~~~---~drv~vm~~G~iv~~G~~~el~ 228 (240)
T d1g2912 191 VTTIYVTHDQV--------EAMTM---GDRIAVMNRGVLQQVGSPDEVY 228 (240)
T ss_dssp CEEEEEESCHH--------HHHHH---CSEEEEEETTEEEEEECHHHHH
T ss_pred CEEEEEcCCHH--------HHHHh---CCEEEEEECCEEEEEcCHHHHH
Confidence 99999999997 67777 999988 444332224444443
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=99.80 E-value=5.7e-21 Score=158.08 Aligned_cols=163 Identities=17% Similarity=0.218 Sum_probs=105.1
Q ss_pred CccccceeeEEEEEeE--EeeCc--ceeecc-EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC-----
Q 026207 1 MLRLRNVFLLIVKFFY--ALYSI--NKIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD----- 70 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~--~~~~~--~~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~----- 70 (241)
||+++|++.-.-.... ..+.. ..+..| ++.|+||||||||||++++++..+|+.|. ++++ +.++...
T Consensus 1 mi~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~--I~~~-g~~i~~~~~~~~ 77 (240)
T d3dhwc1 1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS--VLVD-GQELTTLSESEL 77 (240)
T ss_dssp CEEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEE--EEET-TEEECTTCHHHH
T ss_pred CEEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCc--eEEc-CeEeeeCChhhh
Confidence 8899999743211100 11222 234444 89999999999999999999999988443 3333 2221100
Q ss_pred -------CCC-------cccc----c-------cc----------------------hhhcCCCCCcccHHHHHHHHHhc
Q 026207 71 -------GDI-------PHSA----I-------GT----------------------ARRMQVPEPSLQHKVMIEAVENH 103 (241)
Q Consensus 71 -------~~~-------~~~~----~-------~~----------------------~~~~~~~~~~~~~~~~~~~~l~~ 103 (241)
+.+ +... + +. ......+|+|++|++++++++.+
T Consensus 78 ~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAraL~~ 157 (240)
T d3dhwc1 78 TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALAS 157 (240)
T ss_dssp HHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHHHHT
T ss_pred hhhhccccccccccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHhhhhcc
Confidence 000 0000 0 00 01123467788999999999999
Q ss_pred CCcEEEEcCCCCHHhHHHHH-------HH-HhCCcEEEEeecCCChhhhhcCCccccccccccEEEe-CChHHHHHHHHH
Q 026207 104 MPEVIIVDEIGTEAEAHACR-------SI-AERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL-GDEEARARRCQK 174 (241)
Q Consensus 104 ~p~vlilDE~~~~~d~~~~~-------~~-~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~-~~~~~~~~~~~~ 174 (241)
+|++||+|||++++|+.... +. .+.|+++|.++|... .+..+ ||+|++ .++.....+...
T Consensus 158 ~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~--------~~~~~---~dri~vl~~G~iv~~G~~~ 226 (240)
T d3dhwc1 158 NPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMD--------VVKRI---CDCVAVISNGELIEQDTVS 226 (240)
T ss_dssp CCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHH--------HHHHH---CSEEEEEETTEEEEEEETT
T ss_pred CCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHH--------HHHHh---CCEEEEEECCEEEEECCHH
Confidence 99999999999999994432 33 345999999999997 66677 999887 444443334444
Q ss_pred hhh
Q 026207 175 SIL 177 (241)
Q Consensus 175 ~~k 177 (241)
++.
T Consensus 227 ei~ 229 (240)
T d3dhwc1 227 EVF 229 (240)
T ss_dssp TTT
T ss_pred HHH
Confidence 443
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.79 E-value=1.3e-19 Score=149.05 Aligned_cols=150 Identities=14% Similarity=0.074 Sum_probs=96.6
Q ss_pred CccccceeeEEEEEeE--EeeCc--ceeecc-EEEEEeCCCchHHHHHHHHHHhccccCCC-------------------
Q 026207 1 MLRLRNVFLLIVKFFY--ALYSI--NKIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------- 56 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~--~~~~~--~~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------- 56 (241)
||+++|+..-+-..-. ..++. ..+..| ++.|+||+|||||||++++++..+|+.|.
T Consensus 1 mI~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~ 80 (230)
T d1l2ta_ 1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (230)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchh
Confidence 8899999743321110 11232 234444 89999999999999999999999887443
Q ss_pred ---eEEEEcCCcccCCCCCCccc---------------------------cccchh-----hcCCCCCcccHHHHHHHHH
Q 026207 57 ---RVVIVDTSNEIGGDGDIPHS---------------------------AIGTAR-----RMQVPEPSLQHKVMIEAVE 101 (241)
Q Consensus 57 ---~v~~i~~~~e~~~~~~~~~~---------------------------~~~~~~-----~~~~~~~~~~~~~~~~~~l 101 (241)
++.++.+...+.....+... ..+... ....+|+|++|++.+++++
T Consensus 81 r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAraL 160 (230)
T d1l2ta_ 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARAL 160 (230)
T ss_dssp HHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHH
T ss_pred hcceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHHHHhhh
Confidence 13333322111100000000 000000 1123577889999999999
Q ss_pred hcCCcEEEEcCCCCHHhHHHHH-------HH-HhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 102 NHMPEVIIVDEIGTEAEAHACR-------SI-AERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 102 ~~~p~vlilDE~~~~~d~~~~~-------~~-~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
.++|+++++|||++++|+.... .. .+.|.|+|+++|..+ .+ .+ ||+|++
T Consensus 161 ~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~--------~a-~~---~drv~~ 217 (230)
T d1l2ta_ 161 ANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--------VA-RF---GERIIY 217 (230)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHH--------HH-TT---SSEEEE
T ss_pred hcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHH--------HH-Hh---CCEEEE
Confidence 9999999999999999995432 33 456999999999775 33 45 899887
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.79 E-value=5.4e-20 Score=152.18 Aligned_cols=140 Identities=16% Similarity=0.129 Sum_probs=93.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC---------------------eEEEEcCCcccCCCCCCccc------cccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK---------------------RVVIVDTSNEIGGDGDIPHS------AIGT 80 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~---------------------~v~~i~~~~e~~~~~~~~~~------~~~~ 80 (241)
++.|.||||||||||++++++..+|+.|. ++.++.+...+.....+... ..+.
T Consensus 33 ~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~ 112 (242)
T d1oxxk2 33 RFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKM 112 (242)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhhccceEEeccccccccccHHHHhhhhhHhhcC
Confidence 89999999999999999999999887432 23333222111100000000 0000
Q ss_pred ----------------------hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHH-------HHH-HhCCc
Q 026207 81 ----------------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC-------RSI-AERGV 130 (241)
Q Consensus 81 ----------------------~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~-------~~~-~~~g~ 130 (241)
-.+...+|+|++|++.+++++.++|++|++|||++++|+... ... .+.|+
T Consensus 113 ~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~ 192 (242)
T d1oxxk2 113 SKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGV 192 (242)
T ss_dssp CHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHhhcChHhhhhCChhhCCHHHHhHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCC
Confidence 011234567889999999999999999999999999999332 233 45699
Q ss_pred EEEEeecCCChhhhhcCCccccccccccEEEe-CChHHHHHHHHHhhhc
Q 026207 131 MLIGTAHGEWLENIIKNPILSDLIGGVDTVTL-GDEEARARRCQKSILE 178 (241)
Q Consensus 131 ~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~-~~~~~~~~~~~~~~k~ 178 (241)
|+|+++|..+ .+..+ ||+|++ .++.....+..+++.+
T Consensus 193 tvi~vTHd~~--------~~~~~---~dri~vm~~G~iv~~g~~~el~~ 230 (242)
T d1oxxk2 193 TLLVVSHDPA--------DIFAI---ADRVGVLVKGKLVQVGKPEDLYD 230 (242)
T ss_dssp EEEEEESCHH--------HHHHH---CSEEEEEETTEEEEEECHHHHHH
T ss_pred EEEEEECCHH--------HHHHh---CCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999987 56677 899888 5444333345555543
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=99.78 E-value=7.6e-20 Score=153.15 Aligned_cols=82 Identities=15% Similarity=0.202 Sum_probs=63.0
Q ss_pred CCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHH-------HHHHhCCcEEEEeecCCChhhhhcCCccccccccc
Q 026207 85 QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC-------RSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGV 157 (241)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~-------~~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~ 157 (241)
..+|+|++|++.+++++..+|++||+|||++++|+... ....+.|.++++++|... .+..+ |
T Consensus 148 ~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~--------~~~~~---a 216 (258)
T d1b0ua_ 148 VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG--------FARHV---S 216 (258)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH--------HHHHH---C
T ss_pred ccccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHH--------HHHHh---C
Confidence 34677889999999999999999999999999999433 355567999999999997 66777 9
Q ss_pred cEEEe-CChHHHHHHHHHhhh
Q 026207 158 DTVTL-GDEEARARRCQKSIL 177 (241)
Q Consensus 158 d~V~~-~~~~~~~~~~~~~~k 177 (241)
|+|++ .++.....+..+++.
T Consensus 217 dri~vm~~G~iv~~g~~~ev~ 237 (258)
T d1b0ua_ 217 SHVIFLHQGKIEEEGDPEQVF 237 (258)
T ss_dssp SEEEEEETTEEEEEECHHHHH
T ss_pred CEEEEEECCEEEEEcCHHHHH
Confidence 99988 444433334444443
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.76 E-value=1.5e-19 Score=149.26 Aligned_cols=139 Identities=17% Similarity=0.198 Sum_probs=95.3
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC-------CCCcccc-----------ccc-------
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD-------GDIPHSA-----------IGT------- 80 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~-------~~~~~~~-----------~~~------- 80 (241)
.+++.|+||||||||||++++++.++|+.|. ++++ +.++... +.+++.. +..
T Consensus 24 ~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~--I~~~-G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~~l~~~~~ 100 (240)
T d2onka1 24 RDYCVLLGPTGAGKSVFLELIAGIVKPDRGE--VRLN-GADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVER 100 (240)
T ss_dssp SSEEEEECCTTSSHHHHHHHHHTSSCCSEEE--EEET-TEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCH
T ss_pred CEEEEEECCCCChHHHHHHHHHcCCCCCceE--EEEC-CEECCcCCHHHcCceeeccchhhcccchhhHhhhhhhcccCH
Confidence 3689999999999999999999999988543 4444 2222110 1111110 000
Q ss_pred ------h--------------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HH-HhCCcEE
Q 026207 81 ------A--------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SI-AERGVML 132 (241)
Q Consensus 81 ------~--------------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~-~~~g~~v 132 (241)
+ .....+|+|++|++.+++++.++|+++++|||++++|+.... .. ++.|+++
T Consensus 101 ~~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tv 180 (240)
T d2onka1 101 VERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPI 180 (240)
T ss_dssp HHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCE
T ss_pred HHHHHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHHHHHHHHHHHHHhcCCeE
Confidence 0 012335667899999999999999999999999999995432 32 4459999
Q ss_pred EEeecCCChhhhhcCCccccccccccEEEe-CChHHHHHHHHHhhhc
Q 026207 133 IGTAHGEWLENIIKNPILSDLIGGVDTVTL-GDEEARARRCQKSILE 178 (241)
Q Consensus 133 i~t~H~~~~~~~~~~p~l~~l~~~~d~V~~-~~~~~~~~~~~~~~k~ 178 (241)
|.++|..+ .+.++ ||+|++ .++.....+.++++.+
T Consensus 181 i~vtHd~~--------~~~~~---adri~vm~~G~ii~~G~~~el~~ 216 (240)
T d2onka1 181 LHVTHDLI--------EAAML---ADEVAVMLNGRIVEKGKLKELFS 216 (240)
T ss_dssp EEEESCHH--------HHHHH---CSEEEEEETTEEEEEECHHHHHH
T ss_pred EEEeCCHH--------HHHHh---CCEEEEEECCEEEEEecHHHHhc
Confidence 99999987 67777 999988 4443332355555543
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=99.75 E-value=4.6e-19 Score=147.10 Aligned_cols=134 Identities=14% Similarity=0.226 Sum_probs=87.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccC--------CC-CCCcccc----------c--c-------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIG--------GD-GDIPHSA----------I--G------- 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~--------~~-~~~~~~~----------~--~------- 79 (241)
+++|+||||||||||++.+++.+.|..|. ++++ +.++. .. +.+++.. + +
T Consensus 30 ~vaivG~sGsGKSTLl~ll~gl~~p~~G~--I~i~-g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~ 106 (242)
T d1mv5a_ 30 IIAFAGPSGGGKSTIFSLLERFYQPTAGE--ITID-GQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTD 106 (242)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCSBSC--EEET-TEESTTTSCSCCTTTCCEECCSSCCCCEEHHHHTTSCTTSCSCH
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCCCCE--EEEC-CEEeccccHHHHHhheEEEccccccCCcchhhheecccccccch
Confidence 79999999999999999999999888655 4443 21111 00 1111100 0 0
Q ss_pred ----ch----------h--------hc----CCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHH-------HHHHHH
Q 026207 80 ----TA----------R--------RM----QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH-------ACRSIA 126 (241)
Q Consensus 80 ----~~----------~--------~~----~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~-------~~~~~~ 126 (241)
.. . .+ ..+|+|++|+..+++++..+|+++|+|||++.+|+. .+...
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l- 185 (242)
T d1mv5a_ 107 EDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSL- 185 (242)
T ss_dssp HHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHH-
T ss_pred hhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHH-
Confidence 00 0 00 125677899999999999999999999999999982 22233
Q ss_pred hCCcEEEEeecCCChhhhhcCCccccccccccEEEe-CChHHHHHHHHHhhh
Q 026207 127 ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL-GDEEARARRCQKSIL 177 (241)
Q Consensus 127 ~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~-~~~~~~~~~~~~~~k 177 (241)
..|+|+|+++|..+ .+. . ||+|++ .++.....+..+++.
T Consensus 186 ~~~~Tvi~itH~l~--------~~~-~---~D~i~vl~~G~iv~~G~~~eLl 225 (242)
T d1mv5a_ 186 MKGRTTLVIAHRLS--------TIV-D---ADKIYFIEKGQITGSGKHNELV 225 (242)
T ss_dssp HTTSEEEEECCSHH--------HHH-H---CSEEEEEETTEECCCSCHHHHH
T ss_pred cCCCEEEEEECCHH--------HHH-h---CCEEEEEECCEEEEECCHHHHH
Confidence 35899999999875 232 3 799888 444332224444443
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=99.71 E-value=4.4e-19 Score=146.35 Aligned_cols=129 Identities=12% Similarity=0.123 Sum_probs=86.2
Q ss_pred eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC---------------CCCcc-----cc----
Q 026207 23 KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD---------------GDIPH-----SA---- 77 (241)
Q Consensus 23 ~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~---------------~~~~~-----~~---- 77 (241)
.+..| ++.|.||||||||||++++++..+ ..|. +.++ +.++... ...+. ..
T Consensus 21 ~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~-~~G~--I~~~-g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 96 (231)
T d1l7vc_ 21 EVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGS--IQFA-GQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLH 96 (231)
T ss_dssp EEETTCEEECBCCTTSSHHHHHHHHHTSCC-CSSE--EEES-SSBGGGSCHHHHHHHEEEECSCCCCCSSCBHHHHHHHH
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCC-CceE--EEEC-CEECCcCCHHHHHhhceeeeccccCCccccHHHHhhhc
Confidence 34444 899999999999999999999765 4333 3333 2211100 00000 00
Q ss_pred ----------------ccc----hhhcCCCCCcccHHHHHHHHHhc-------CCcEEEEcCCCCHHhHHHH-------H
Q 026207 78 ----------------IGT----ARRMQVPEPSLQHKVMIEAVENH-------MPEVIIVDEIGTEAEAHAC-------R 123 (241)
Q Consensus 78 ----------------~~~----~~~~~~~~~~~~~~~~~~~~l~~-------~p~vlilDE~~~~~d~~~~-------~ 123 (241)
.+. ......+|++++|+..+++++.+ +|+++++|||++++|+... .
T Consensus 97 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~ 176 (231)
T d1l7vc_ 97 QHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILS 176 (231)
T ss_dssp CSCTTCHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHhcCCHhHhCcChhhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 000 01123467788999999999876 6799999999999999433 3
Q ss_pred HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe-CChH
Q 026207 124 SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL-GDEE 166 (241)
Q Consensus 124 ~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~-~~~~ 166 (241)
...+.|.++++++|..+ .+.++ ||+|++ .++.
T Consensus 177 ~l~~~g~tii~vtHdl~--------~~~~~---~dri~vl~~G~ 209 (231)
T d1l7vc_ 177 ALCQQGLAIVMSSHDLN--------HTLRH---AHRAWLLKGGK 209 (231)
T ss_dssp HHHHTTCEEEECCCCHH--------HHHHH---CSBCCBEETTE
T ss_pred HHHhCCCEEEEEeCCHH--------HHHHH---CCEEEEEECCE
Confidence 45667999999999987 66777 888877 4433
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.69 E-value=6.5e-18 Score=140.95 Aligned_cols=140 Identities=16% Similarity=0.196 Sum_probs=90.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCCC-----------CCccccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGDG-----------DIPHSAI 78 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~~-----------~~~~~~~ 78 (241)
+++|+||+|||||||++.|++.+.|..|. ++.|+.+...+.... ......+
T Consensus 43 ~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i 122 (253)
T d3b60a1 43 TVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQI 122 (253)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHH
T ss_pred EEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhhhheEEEEeeccccCCcchhhhhhhcCcccCCHHHH
Confidence 79999999999999999999999887432 133443222211100 0000000
Q ss_pred ------------------cchh----hcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH------HHHhCCc
Q 026207 79 ------------------GTAR----RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR------SIAERGV 130 (241)
Q Consensus 79 ------------------~~~~----~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~------~~~~~g~ 130 (241)
+.-. +-..+|+|++|+..+++++..+|+++|+|||++.+|+.... .....+.
T Consensus 123 ~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~ 202 (253)
T d3b60a1 123 EEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNR 202 (253)
T ss_dssp HHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhccCC
Confidence 0000 01125678899999999999999999999999999995432 1124589
Q ss_pred EEEEeecCCChhhhhcCCccccccccccEEEe-CChHHHHHHHHHhhhcc
Q 026207 131 MLIGTAHGEWLENIIKNPILSDLIGGVDTVTL-GDEEARARRCQKSILER 179 (241)
Q Consensus 131 ~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~-~~~~~~~~~~~~~~k~r 179 (241)
|+|+++|..+ .+ .. ||+|++ .++.....+..+++.++
T Consensus 203 Tvi~itH~l~--------~~-~~---~D~v~vl~~G~Iv~~G~~~eLl~~ 240 (253)
T d3b60a1 203 TSLVIAHRLS--------TI-EQ---ADEIVVVEDGIIVERGTHSELLAQ 240 (253)
T ss_dssp EEEEECSCGG--------GT-TT---CSEEEEEETTEEEEEECHHHHHHH
T ss_pred EEEEEECCHH--------HH-Hh---CCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999875 33 34 899988 44443333555555443
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=99.69 E-value=5.2e-18 Score=140.51 Aligned_cols=138 Identities=17% Similarity=0.176 Sum_probs=89.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCCCC-----Cccccc------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGDGD-----IPHSAI------ 78 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~~~-----~~~~~~------ 78 (241)
.++|+||+|||||||++.+++.+.+..|. ++.|+.+...+..... ......
T Consensus 31 ~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~ 110 (241)
T d2pmka1 31 VIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVI 110 (241)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHHHHHCTTSTTCCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceEEEEecccccCCccccccccccCccccHHHHH
Confidence 79999999999999999999999887433 2334433221111000 000000
Q ss_pred -----------------cch----hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH------HHHhCCcE
Q 026207 79 -----------------GTA----RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR------SIAERGVM 131 (241)
Q Consensus 79 -----------------~~~----~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~------~~~~~g~~ 131 (241)
+.. ..-..+|+|++|+..+++++..+|+++|+|||++.+|+.... .....|.|
T Consensus 111 ~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~T 190 (241)
T d2pmka1 111 YAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRT 190 (241)
T ss_dssp HHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHhCCCE
Confidence 000 001235667899999999999999999999999999995433 12235899
Q ss_pred EEEeecCCChhhhhcCCccccccccccEEEe-CChHHHHHHHHHhhh
Q 026207 132 LIGTAHGEWLENIIKNPILSDLIGGVDTVTL-GDEEARARRCQKSIL 177 (241)
Q Consensus 132 vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~-~~~~~~~~~~~~~~k 177 (241)
+|+++|..+ .+ .. ||+|++ .++.....+..+++.
T Consensus 191 vi~itH~l~--------~~-~~---~D~i~vl~~G~Iv~~G~~~ell 225 (241)
T d2pmka1 191 VIIIAHRLS--------TV-KN---ADRIIVMEKGKIVEQGKHKELL 225 (241)
T ss_dssp EEEECSSGG--------GG-TT---SSEEEEEETTEEEEEECHHHHH
T ss_pred EEEEECCHH--------HH-Hh---CCEEEEEECCEEEEECCHHHHH
Confidence 999999886 33 34 799887 444433234445543
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=2.6e-18 Score=143.29 Aligned_cols=139 Identities=14% Similarity=0.141 Sum_probs=90.1
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCCC--------CCccc---c-
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGDG--------DIPHS---A- 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~~--------~~~~~---~- 77 (241)
++.|+||||||||||++.+++.+.|..|. ++.++.+...+.... ..... .
T Consensus 42 ~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~ 121 (251)
T d1jj7a_ 42 VTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEI 121 (251)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHHHHHhhhccccccccCcchhhhhhhhhcccchHHHH
Confidence 79999999999999999999999887442 233443222111100 00000 0
Q ss_pred ------------c-----cchhhc----CCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH---H----H-HhC
Q 026207 78 ------------I-----GTARRM----QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR---S----I-AER 128 (241)
Q Consensus 78 ------------~-----~~~~~~----~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~---~----~-~~~ 128 (241)
+ +....+ ..+|+|++|+..+++++..+|+++|+|||++.+|+.... . . ...
T Consensus 122 ~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~ 201 (251)
T d1jj7a_ 122 TAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERY 201 (251)
T ss_dssp HHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGG
T ss_pred HHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhc
Confidence 0 000001 236678899999999999999999999999999995432 1 1 234
Q ss_pred CcEEEEeecCCChhhhhcCCccccccccccEEEe-CChHHHHHHHHHhhhc
Q 026207 129 GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL-GDEEARARRCQKSILE 178 (241)
Q Consensus 129 g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~-~~~~~~~~~~~~~~k~ 178 (241)
|.|+|+++|..+ .+ .. ||+|++ .++.....++.+++.+
T Consensus 202 ~~Tvi~itH~l~--------~~-~~---aDrI~vl~~G~iv~~Gt~~eLl~ 240 (251)
T d1jj7a_ 202 SRSVLLITQHLS--------LV-EQ---ADHILFLEGGAIREGGTHQQLME 240 (251)
T ss_dssp GCEEEEECSCHH--------HH-HT---CSEEEEEETTEEEEEECHHHHHH
T ss_pred CCEEEEEeCCHH--------HH-Hh---CCEEEEEECCEEEEECCHHHHHh
Confidence 889999999875 22 23 799888 4444433355555544
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=99.67 E-value=1.8e-16 Score=140.45 Aligned_cols=114 Identities=19% Similarity=0.230 Sum_probs=95.8
Q ss_pred eeccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCC-CcccHHHHHHHHHh
Q 026207 24 IIFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPE-PSLQHKVMIEAVEN 102 (241)
Q Consensus 24 ~~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~ 102 (241)
...|+++|+||+||||||++.++...+... ++++++++++.|....+. .+..+.. .+..+...++.+++
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~-~~~i~tiEdPiE~~~~~~---------~q~~v~~~~~~~~~~~l~~~lR 225 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSS-ERNILTVEDPIEFDIDGI---------GQTQVNPRVDMTFARGLRAILR 225 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCT-TSCEEEEESSCCSCCSSS---------EEEECBGGGTBCHHHHHHHHGG
T ss_pred hhhceEEEEcCCCCCccHHHHHHhhhhcCC-CceEEEeccCcccccCCC---------CeeeecCCcCCCHHHHHHHHHh
Confidence 456799999999999999999999988644 578999999998754322 1222222 35689999999999
Q ss_pred cCCcEEEEcCCCCHHhHHHHHHHHhCCcEEEEeecCCChhhhhcC
Q 026207 103 HMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKN 147 (241)
Q Consensus 103 ~~p~vlilDE~~~~~d~~~~~~~~~~g~~vi~t~H~~~~~~~~~~ 147 (241)
++||+|+++|+++...+..+..++.+||.|++|+|++++.+++.+
T Consensus 226 ~dPDvi~igEiRd~~ta~~a~~aa~tGhlV~tTlHa~~a~~~~~R 270 (401)
T d1p9ra_ 226 QDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTR 270 (401)
T ss_dssp GCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHH
T ss_pred hcCCEEEecCcCChHHHHHHHHHHhcCCeEEEEeccCchHhhhhh
Confidence 999999999999999999999999999999999999998777764
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.65 E-value=1.4e-17 Score=139.00 Aligned_cols=139 Identities=14% Similarity=0.175 Sum_probs=89.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCCCC-----C--cc---cc--
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGDGD-----I--PH---SA-- 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~~~-----~--~~---~~-- 77 (241)
.++|+||+|||||||++.+++.+.+..|. ++.|+.+...+..... . +. ..
T Consensus 46 ~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~ 125 (255)
T d2hyda1 46 TVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVV 125 (255)
T ss_dssp EEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHHhhheeeeeeccccCCCCCHHHHHhccCcCCCHHHHH
Confidence 79999999999999999999999987432 2334432221111000 0 00 00
Q ss_pred -----c-----------cchh----hcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH------HHHhCCcE
Q 026207 78 -----I-----------GTAR----RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR------SIAERGVM 131 (241)
Q Consensus 78 -----~-----------~~~~----~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~------~~~~~g~~ 131 (241)
. +.-. +-..+|+|++|+..+++++..+|+++|+|||++.+|+.... .....+.|
T Consensus 126 ~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~T 205 (255)
T d2hyda1 126 EAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRT 205 (255)
T ss_dssp HHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSE
T ss_pred HHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhcCCE
Confidence 0 0000 01125667899999999999999999999999999995432 22345889
Q ss_pred EEEeecCCChhhhhcCCccccccccccEEEe-CChHHHHHHHHHhhhc
Q 026207 132 LIGTAHGEWLENIIKNPILSDLIGGVDTVTL-GDEEARARRCQKSILE 178 (241)
Q Consensus 132 vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~-~~~~~~~~~~~~~~k~ 178 (241)
+|+++|..+ .+ .. ||+|++ .++.....+..+++.+
T Consensus 206 vI~itH~~~--------~~-~~---~D~ii~l~~G~iv~~G~~~eLl~ 241 (255)
T d2hyda1 206 TLIVAHRLS--------TI-TH---ADKIVVIENGHIVETGTHRELIA 241 (255)
T ss_dssp EEEECSSGG--------GT-TT---CSEEEEEETTEEEEEECHHHHHH
T ss_pred EEEEeCCHH--------HH-Hh---CCEEEEEECCEEEEECCHHHHHh
Confidence 999999875 33 23 799888 4444333345555544
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.64 E-value=2.4e-16 Score=126.96 Aligned_cols=112 Identities=12% Similarity=0.178 Sum_probs=73.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC-------------eEEEEcCCcccCCCCCCc---------------ccc--
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK-------------RVVIVDTSNEIGGDGDIP---------------HSA-- 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-------------~v~~i~~~~e~~~~~~~~---------------~~~-- 77 (241)
++.|.||||||||||++++++.++|..|. ++.|+.+...+.....+. ...
T Consensus 29 i~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~~~~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~ 108 (200)
T d1sgwa_ 29 VVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIM 108 (200)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHH
T ss_pred EEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhHhcCcEEEEeecccCCCCcCHHHHHHHHHHhcCCccCHHHHH
Confidence 79999999999999999999999988443 223333211110000000 000
Q ss_pred --------ccchhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHH-------HH-HHhCCcEEEEeecCC
Q 026207 78 --------IGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC-------RS-IAERGVMLIGTAHGE 139 (241)
Q Consensus 78 --------~~~~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~-------~~-~~~~g~~vi~t~H~~ 139 (241)
.....++..+|+|++++..+++++.++|+++++|||++++|+... .. .++.|.+++++.|..
T Consensus 109 ~~l~~~~~~~~~~~~~~LSgG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~l 186 (200)
T d1sgwa_ 109 DALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL 186 (200)
T ss_dssp HHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC
T ss_pred HHHHHcCCcccccccCcCCCcHHHHHHHHHHHhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEechh
Confidence 000012334677889999999999999999999999999998322 22 344566777766654
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.64 E-value=6.4e-17 Score=136.79 Aligned_cols=127 Identities=11% Similarity=-0.025 Sum_probs=85.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCC-----CeEEEEcCCcccCCCC--------C-Cccc-------------cccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQ-----KRVVIVDTSNEIGGDG--------D-IPHS-------------AIGT 80 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g-----~~v~~i~~~~e~~~~~--------~-~~~~-------------~~~~ 80 (241)
+++|+||||||||||++.|+|.+.++.| .++.|+.+...+.... . .... .+..
T Consensus 64 ~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~i~~ 143 (281)
T d1r0wa_ 64 MLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITK 143 (281)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCSCEEEECSSCCCCSEEHHHHHTTTSCCCHHHHHHHHHHTTCHHHHTT
T ss_pred EEEEECCCCChHHHHHHHHhCCCcCCCcEEEECCEEEEEeccccccCceeeccccccccccchHHHHHHHHHHhHHHHHh
Confidence 7999999999999999999999988733 3566665433221100 0 0000 0000
Q ss_pred h---------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHHH---H----HhCCcEEEEeecCCChhhh
Q 026207 81 A---------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRS---I----AERGVMLIGTAHGEWLENI 144 (241)
Q Consensus 81 ~---------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~~---~----~~~g~~vi~t~H~~~~~~~ 144 (241)
. .....+|+|++|+..+++++.++|+++++|||++.+|+..... . ...|.++|+++|...
T Consensus 144 l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~---- 219 (281)
T d1r0wa_ 144 FAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKME---- 219 (281)
T ss_dssp STTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHH----
T ss_pred chhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchhhcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEechHH----
Confidence 0 0011267789999999999999999999999999999854332 1 124789999899764
Q ss_pred hcCCccccccccccEEEe-CChH
Q 026207 145 IKNPILSDLIGGVDTVTL-GDEE 166 (241)
Q Consensus 145 ~~~p~l~~l~~~~d~V~~-~~~~ 166 (241)
.+ .. ||+|++ .++.
T Consensus 220 ----~l-~~---aDrI~vl~~G~ 234 (281)
T d1r0wa_ 220 ----HL-RK---ADKILILHQGS 234 (281)
T ss_dssp ----HH-HT---CSEEEEEETTE
T ss_pred ----HH-Hh---CCEEEEEECCE
Confidence 22 34 799887 4443
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=99.57 E-value=6.5e-15 Score=126.71 Aligned_cols=110 Identities=16% Similarity=0.196 Sum_probs=87.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCcE
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEV 107 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~v 107 (241)
.++|+||+||||||+++++++.++++ .+++++++..|+...... .. .++. ...+..+..++..+++++||.
T Consensus 168 nili~G~tgSGKTT~l~al~~~i~~~--~rivtiEd~~El~l~~~~---~~---~~~~-~~~~~~~~~ll~~~lR~~pd~ 238 (323)
T d1g6oa_ 168 NVIVCGGTGSGKTTYIKSIMEFIPKE--ERIISIEDTEEIVFKHHK---NY---TQLF-FGGNITSADCLKSCLRMRPDR 238 (323)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGSCTT--CCEEEEESSCCCCCSSCS---SE---EEEE-CBTTBCHHHHHHHHTTSCCSE
T ss_pred CEEEEeeccccchHHHHHHhhhcccc--cceeeccchhhhhccccc---cc---ceec-cccchhHHHHHHHHhccCCCc
Confidence 48999999999999999999999876 789999988887543110 11 0111 123568889999999999999
Q ss_pred EEEcCCCCHHhHHHHHHHHhCCcE-EEEeecCCChhhhhcC
Q 026207 108 IIVDEIGTEAEAHACRSIAERGVM-LIGTAHGEWLENIIKN 147 (241)
Q Consensus 108 lilDE~~~~~d~~~~~~~~~~g~~-vi~t~H~~~~~~~~~~ 147 (241)
++++|+++.+. ..+.++.++|+. +++|+|++++.+++.+
T Consensus 239 iivgEiR~~ea-~~~l~a~~tGh~g~~tT~Ha~s~~~a~~R 278 (323)
T d1g6oa_ 239 IILGELRSSEA-YDFYNVLCSGHKGTLTTLHAGSSEEAFIR 278 (323)
T ss_dssp EEESCCCSTHH-HHHHHHHHTTCSCEEEEECCSSHHHHHHH
T ss_pred ccCCccCchhH-HHHHHHHHhcCCcEEEEECCCCHHHHHHH
Confidence 99999998864 456678899986 9999999998877753
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.37 E-value=5.7e-13 Score=103.48 Aligned_cols=110 Identities=19% Similarity=0.145 Sum_probs=63.8
Q ss_pred EEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCcc----------cc-------ccchhhcCCC----
Q 026207 29 FLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPH----------SA-------IGTARRMQVP---- 87 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~----------~~-------~~~~~~~~~~---- 87 (241)
++|+||||||||||++.+++.+++..|. +++.............. .. .....+....
T Consensus 3 i~I~G~~G~GKSTLl~~i~~~l~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (178)
T d1ye8a1 3 IIITGEPGVGKTTLVKKIVERLGKRAIG--FWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYF 80 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGGGEEE--EEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHHHH
T ss_pred EEEECCCCcHHHHHHHHHHhcCCCCcce--EEECCcchHHHHHhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhcCcchh
Confidence 7899999999999999999999876332 22221100000000000 00 0000001110
Q ss_pred --CCcccHHHHHHHHHhcCCcEEEEcCCCCHHhH-----HHHHHHH-hCCcEEEEeecCCC
Q 026207 88 --EPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-----HACRSIA-ERGVMLIGTAHGEW 140 (241)
Q Consensus 88 --~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~-----~~~~~~~-~~g~~vi~t~H~~~ 140 (241)
+.+..++.+++++...+|+++++||++...+. ..+..+. ..+.+++.++|...
T Consensus 81 ~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~~~~~~il~~~h~~~ 141 (178)
T d1ye8a1 81 EELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRD 141 (178)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSC
T ss_pred hhhhhhhHHHHHHHHHhcCCCceeecCCCccchhhHHHHHHHHHHhccCCCEEEEEEccHH
Confidence 11235667788888999999999998755322 2233433 45789999999876
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=99.15 E-value=5e-12 Score=102.96 Aligned_cols=181 Identities=12% Similarity=0.113 Sum_probs=103.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC--------CCCccc--cccchhhcCCCCCccc----H
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD--------GDIPHS--AIGTARRMQVPEPSLQ----H 93 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~--------~~~~~~--~~~~~~~~~~~~~~~~----~ 93 (241)
+++|.||||+||||++.+++...... +.+++|++ .++.... +..... ..+............. .
T Consensus 28 l~li~G~pGsGKT~l~~qia~~~~~~-~~~~~~is-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (242)
T d1tf7a2 28 IILATGATGTGKTLLVSRFVENACAN-KERAILFA-YEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDHL 105 (242)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHTT-TCCEEEEE-SSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHh-ccccceee-ccCCHHHHHHHHHHcCCChHHHhhcCceEEEEeecchhhHHHHH
Confidence 89999999999999999999987554 57788887 3322110 000000 0000000111111122 2
Q ss_pred HHHHHHHHhcCCcEEEEcCCCCHHh---H--------HHHHHHHhCCcEEEEeecCCChhhh-hcC-CccccccccccEE
Q 026207 94 KVMIEAVENHMPEVIIVDEIGTEAE---A--------HACRSIAERGVMLIGTAHGEWLENI-IKN-PILSDLIGGVDTV 160 (241)
Q Consensus 94 ~~~~~~~l~~~p~vlilDE~~~~~d---~--------~~~~~~~~~g~~vi~t~H~~~~~~~-~~~-p~l~~l~~~~d~V 160 (241)
..+...+...+|+++++|.++.... . .....+++.+++++.+.|....... ... ..++++ +|.|
T Consensus 106 ~~i~~~i~~~~~~~vviDs~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---ad~v 182 (242)
T d1tf7a2 106 QIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTI---TDTI 182 (242)
T ss_dssp HHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTT---CSEE
T ss_pred HHHHHHHHhcCCceeeeecchhhhcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeEeeccccccCCcceeee---cceE
Confidence 2334445567899999999654421 1 1123456788998888886542221 112 256777 8888
Q ss_pred Ee---CChHHHHHHHHHhhhccCCCCCc-eEEEEEEcCceEEeecchHHHHHHhcCCC
Q 026207 161 TL---GDEEARARRCQKSILERKAPPTF-YFLIEMRERHYWVTHKTEKSVDMLLRGKT 214 (241)
Q Consensus 161 ~~---~~~~~~~~~~~~~~k~r~g~~~~-~~~fe~~~~g~~~~~~~~~~~~~~l~G~~ 214 (241)
+. ........|.++..|.|.++... ...|++.+.|+.+.... ...+.++.|..
T Consensus 183 i~l~~~~~~~~~~R~i~v~K~R~~~~~~~~~~f~I~~~Gi~i~~~~-~~~~~~~~g~~ 239 (242)
T d1tf7a2 183 ILLQYVEIRGEMSRAINVFKMRGSWHDKAIREFMISDKGPDIKDSF-RNFERIISGSP 239 (242)
T ss_dssp EEEEEEEETTEEEEEEEEEEESSSCCCCBCEEEEECSSCEEEEEEC-TTEECCTTSSC
T ss_pred EEEEEeecCCceEEEEEEEecCCCCCCCeEEEEEEeCCcEEEcCcc-ccccccccCCC
Confidence 86 11111112667778888766443 35699999998654332 23356777743
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=98.98 E-value=1.9e-10 Score=95.56 Aligned_cols=156 Identities=17% Similarity=0.177 Sum_probs=90.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCC-------CC--cccHHHHHH
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVP-------EP--SLQHKVMIE 98 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~-------~~--~~~~~~~~~ 98 (241)
++.|.||||+||||++.+++...... |..++|++....+. . .++.++++. .. ..++...+.
T Consensus 56 itei~G~~gsGKTtl~l~~~~~~q~~-g~~~vyidtE~~~~-~--------~~a~~~Gvd~d~v~~~~~~~~E~~~~~i~ 125 (263)
T d1u94a1 56 IVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFIDAEHALD-P--------IYARKLGVDIDNLLCSQPDTGEQALEICD 125 (263)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEESSCCCC-H--------HHHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred EEEEecCCCcHHHHHHHHHHHHHHcC-CCEEEEEccccccC-H--------HHHHHhCCCHHHEEEecCCCHHHHHHHHH
Confidence 89999999999999999999887654 78899999433321 1 011111211 11 112222333
Q ss_pred HHH-hcCCcEEEEcCCCCHHhH----------------HH--------HHHHHhCCcEEEEeecCCChhhhh-cCC----
Q 026207 99 AVE-NHMPEVIIVDEIGTEAEA----------------HA--------CRSIAERGVMLIGTAHGEWLENII-KNP---- 148 (241)
Q Consensus 99 ~~l-~~~p~vlilDE~~~~~d~----------------~~--------~~~~~~~g~~vi~t~H~~~~~~~~-~~p---- 148 (241)
.+. ..+++++|+|++++.... .. ...+...+++++.+-|..+-.+.. ..|
T Consensus 126 ~l~~~~~~~liViDSi~al~~~~e~~~~~~~~~~~~~a~~l~~~~~~l~~~~~~~~~~vi~~NQv~~~~~~~~g~~~~~~ 205 (263)
T d1u94a1 126 ALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTT 205 (263)
T ss_dssp HHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC--------------CT
T ss_pred HHHhcCCCCEEEEECccccccchhcccccccchHHHHHHHHHHHHHHHHHhhhccCceEEEEEEEEeccccccCCCcccc
Confidence 333 466799999999755311 00 113455789999999977534332 111
Q ss_pred ---ccccccccccEEEe-C--------ChHHHHHHHHHhhhccCCCCCceEEEEEE-cCce
Q 026207 149 ---ILSDLIGGVDTVTL-G--------DEEARARRCQKSILERKAPPTFYFLIEMR-ERHY 196 (241)
Q Consensus 149 ---~l~~l~~~~d~V~~-~--------~~~~~~~~~~~~~k~r~g~~~~~~~fe~~-~~g~ 196 (241)
.+.|. ++.++. . +.....+...+.+|+|++++.....|++. +.|+
T Consensus 206 GG~al~~~---~~~rl~l~k~~~~k~g~~~iG~~~r~~v~Knr~~~p~~~~~f~i~~~~GI 263 (263)
T d1u94a1 206 GGNALKFY---ASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGI 263 (263)
T ss_dssp TCSHHHHH---CSEEEEEEEEEEEESSSSEEEEEEEEEEEEESSBCSCCEEEEEEETTTEE
T ss_pred ccchhhee---eEEEEEEEeccccccCCceeeeEEEEEEEeCCCCCCCCEEEEEEEcCCCC
Confidence 34555 677665 1 11110111246679999999989999998 6664
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=98.92 E-value=6.2e-10 Score=89.16 Aligned_cols=166 Identities=14% Similarity=0.046 Sum_probs=92.1
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC--------CCCccccc--cchhhc-----CC---CCC
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD--------GDIPHSAI--GTARRM-----QV---PEP 89 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~--------~~~~~~~~--~~~~~~-----~~---~~~ 89 (241)
+++|.|+||+|||+|+.+++.......+.+++|++ .++.... ........ ...... .. ...
T Consensus 28 ~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~~~~s-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (242)
T d1tf7a1 28 STLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVT-FEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQEVVG 106 (242)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEE-SSSCHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCCSSCCSCCS
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhcCCCccccc-ccCCHHHHHHHHHHcCCChHHHHHhcchhhhhhccchhhhhhhc
Confidence 89999999999999998877543333245788876 3322100 00000000 000000 00 000
Q ss_pred ccc----HHHHHHHHHhcCCcEEEEcCCCCHHhH------------HHHHHHHhCCcEEEEeecCCChhhhhcCC-cccc
Q 026207 90 SLQ----HKVMIEAVENHMPEVIIVDEIGTEAEA------------HACRSIAERGVMLIGTAHGEWLENIIKNP-ILSD 152 (241)
Q Consensus 90 ~~~----~~~~~~~~l~~~p~vlilDE~~~~~d~------------~~~~~~~~~g~~vi~t~H~~~~~~~~~~p-~l~~ 152 (241)
... ...+...+..++|+++++|........ .....+++.|++++.+.|.....+...++ ..+.
T Consensus 107 ~~~~~~l~~~l~~~i~~~~~~~viiD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (242)
T d1tf7a1 107 GFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEF 186 (242)
T ss_dssp SHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHH
T ss_pred cccHHHHHHHHHHHHHhhccchhhhhHHHHHHHhccChhHHHHHHHHHHHHHHhcCCceEEeecccccccccccCcceee
Confidence 111 123334455679999999998654322 11224566789988888877634443333 3445
Q ss_pred ccccccEEEe----CChHHHHHHHHHhhhccCCCCC-ceEEEEEEcCceEE
Q 026207 153 LIGGVDTVTL----GDEEARARRCQKSILERKAPPT-FYFLIEMRERHYWV 198 (241)
Q Consensus 153 l~~~~d~V~~----~~~~~~~~~~~~~~k~r~g~~~-~~~~fe~~~~g~~~ 198 (241)
+ +|.++. .+... .+|.++..|+|.++.. ....|++++.|+-+
T Consensus 187 ~---~d~i~~~~~~~~~~~-~~r~l~v~K~R~~~~~~~~~~f~I~~~Gi~v 233 (242)
T d1tf7a1 187 V---SDNVVILRNVLEGER-RRRTLEILKLRGTSHMKGEYPFTITDHGINI 233 (242)
T ss_dssp H---CSEEEEEEEECSTTC-CEEEEEEEEETTSCCCCSEEEEEEETTEEEE
T ss_pred e---ccEEEEEEEeeeCCe-eEEEEEEEEcCCCCCCCeEEEEEEeCCcEEE
Confidence 5 788776 22221 2267778888865533 34569999888743
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=98.74 E-value=1.9e-08 Score=82.79 Aligned_cols=175 Identities=8% Similarity=0.005 Sum_probs=89.0
Q ss_pred eeCcceeeccEEEEEeCCCchHHHHHHHHHHhcccc---------CCCeEEEEcCCcccCCC---------CCCcc-ccc
Q 026207 18 LYSINKIIFDFFLSYFRPGVGKTTVMREIARVLSDE---------FQKRVVIVDTSNEIGGD---------GDIPH-SAI 78 (241)
Q Consensus 18 ~~~~~~~~~g~vll~Gp~GsGKTTLl~~l~~~l~~~---------~g~~v~~i~~~~e~~~~---------~~~~~-~~~ 78 (241)
+.+.. ++..+++|+|+||+|||||+.+++..+... .+.+|+|++ .++.... ..... ...
T Consensus 22 li~G~-~pg~~~~i~G~~G~GKS~l~l~la~~ia~g~~~~~~~~~~~~~vl~~~-~E~~~~~~~~Rl~~~~~~~~~~~~~ 99 (274)
T d1nlfa_ 22 VLPNM-VAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLP-AEDPPTAIHHRLHALGAHLSAEERQ 99 (274)
T ss_dssp EETTE-ETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEE-SSSCHHHHHHHHHHHHTTSCHHHHH
T ss_pred HhCCc-cCCcEEEEEeCCCCCHHHHHHHHHHHHHcCCCcccccccCCCceEEEe-ccchHHHHHHHHHHHhhccChhhhh
Confidence 34443 346699999999999999999998765422 234788887 3322100 00000 000
Q ss_pred cchhhcCC------CCCcccHHHHH-HHHHhcCCcEEEEcCCCCHH-----hHHH-------H-HHHHhCCcEEEEeecC
Q 026207 79 GTARRMQV------PEPSLQHKVMI-EAVENHMPEVIIVDEIGTEA-----EAHA-------C-RSIAERGVMLIGTAHG 138 (241)
Q Consensus 79 ~~~~~~~~------~~~~~~~~~~~-~~~l~~~p~vlilDE~~~~~-----d~~~-------~-~~~~~~g~~vi~t~H~ 138 (241)
........ ........... .....++|+++|+|.+.... +... + ..+...|++++++.|.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~ 179 (274)
T d1nlfa_ 100 AVADGLLIQPLIGSLPNIMAPEWFDGLKRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHA 179 (274)
T ss_dssp HHHHHEEECCCTTSCCCTTSHHHHHHHHHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred cccccceeccccCccchhHHHHHHHHHHHhccCccEEecCchhhhccccccchhhHHHHHHHHHHHhhcCCCceehhhhc
Confidence 00000100 01111111111 12234689999999875431 1111 1 1355679999999998
Q ss_pred CChhhh---------hcCC-ccccccccccEEEe---CChHHHH--------H---HHHHhhhccCCCCCceEEEEEEcC
Q 026207 139 EWLENI---------IKNP-ILSDLIGGVDTVTL---GDEEARA--------R---RCQKSILERKAPPTFYFLIEMRER 194 (241)
Q Consensus 139 ~~~~~~---------~~~p-~l~~l~~~~d~V~~---~~~~~~~--------~---~~~~~~k~r~g~~~~~~~fe~~~~ 194 (241)
++.... +.+. .+.+. +|.++. .+..... + ..++..|+|++++.....|+..+.
T Consensus 180 ~K~~~~~~~~~~~~~~~Gssai~~~---a~~v~~l~r~~~~~~~~~~~~~~~~~~~~~~~v~K~~~~~~~~~~~~~~~~~ 256 (274)
T d1nlfa_ 180 SKGAAMMGAGDQQQASRGSSVLVDN---IRWQSYLSSMTSAEAEEWGVDDDQRRFFVRFGVSKANYGAPFADRWFRRHDG 256 (274)
T ss_dssp --------------------CTGGG---CSCEEEEEECCHHHHHHTTCCTTSGGGEEEEEEEECSSSSCCCCEEEEECGG
T ss_pred cccccccCCcccccccccHHHHHhh---ccEEEEEEecchhhhhhccCcccccCcEEEEEEEeeCCCCCCceEEEEEeCC
Confidence 863211 1111 23333 888887 1111100 0 123457889998887778887776
Q ss_pred ceE
Q 026207 195 HYW 197 (241)
Q Consensus 195 g~~ 197 (241)
|..
T Consensus 257 g~~ 259 (274)
T d1nlfa_ 257 GVL 259 (274)
T ss_dssp GCE
T ss_pred cCC
Confidence 753
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=98.71 E-value=9.9e-09 Score=84.66 Aligned_cols=68 Identities=24% Similarity=0.255 Sum_probs=50.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCcE
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEV 107 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~v 107 (241)
.+||+||||||||+++++++..+. ..+++++ ..++... .+.....+.+.+++.+..+.|.+
T Consensus 47 ~iLL~GppGtGKT~la~~iA~~~~----~~~~~i~-~~~l~~~--------------~~g~~~~~l~~~f~~A~~~~P~i 107 (256)
T d1lv7a_ 47 GVLMVGPPGTGKTLLAKAIAGEAK----VPFFTIS-GSDFVEM--------------FVGVGASRVRDMFEQAKKAAPCI 107 (256)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT----CCEEEEC-SCSSTTS--------------CCCCCHHHHHHHHHHHHTTCSEE
T ss_pred eEEeeCCCCCCccHHHHHHHHHcC----CCEEEEE-hHHhhhc--------------chhHHHHHHHHHHHHHHHcCCEE
Confidence 589999999999999999998774 5678887 5544211 01112345667888888999999
Q ss_pred EEEcCCC
Q 026207 108 IIVDEIG 114 (241)
Q Consensus 108 lilDE~~ 114 (241)
|++||+-
T Consensus 108 l~iDeiD 114 (256)
T d1lv7a_ 108 IFIDEID 114 (256)
T ss_dssp EEETTHH
T ss_pred EEEEChh
Confidence 9999973
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.70 E-value=6.9e-09 Score=86.14 Aligned_cols=156 Identities=13% Similarity=0.106 Sum_probs=88.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCC---------cccHHHHHH
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEP---------SLQHKVMIE 98 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~ 98 (241)
++.|.||+|+||||++..++...... +..++|||....+... ++.++++... ..+...++.
T Consensus 62 i~e~~G~~~~GKT~l~l~~~~~~q~~-g~~~vyIDtE~~~~~e---------~a~~~GvD~d~il~~~~~~~E~~~~~~~ 131 (269)
T d1mo6a1 62 VIEIYGPESSGKTTVALHAVANAQAA-GGVAAFIDAEHALDPD---------YAKKLGVDTDSLLVSQPDTGEQALEIAD 131 (269)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHHHT-TCEEEEEESSCCCCHH---------HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred eEEEecCCCcHHHHHHHHHHHHHhcC-CCEEEEEECCccCCHH---------HHHHhCCCHHHeEEecCCCHHHHHHHHH
Confidence 89999999999999998888776544 6889999944333110 1122222111 112222333
Q ss_pred HHH-hcCCcEEEEcCCCCHHhH-H---------------HH----H----HHHhCCcEEEEeecCCChhhhhc-CC----
Q 026207 99 AVE-NHMPEVIIVDEIGTEAEA-H---------------AC----R----SIAERGVMLIGTAHGEWLENIIK-NP---- 148 (241)
Q Consensus 99 ~~l-~~~p~vlilDE~~~~~d~-~---------------~~----~----~~~~~g~~vi~t~H~~~~~~~~~-~p---- 148 (241)
.+. ...++++|+|++.+.... + .+ . .+...+++++.+-|..+-.+... .|
T Consensus 132 ~l~~~~~~~liIiDSi~al~~~~E~e~~~~~~~~~~~a~~l~~~l~~l~~~~~~~~~~vi~~NQv~~~~~~~~g~~~~~~ 211 (269)
T d1mo6a1 132 MLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLRDKIGVMFGSPETTT 211 (269)
T ss_dssp HHHHTTCEEEEEEECSTTCCCHHHHC-------CCHHHHHHHHHHHHHHHHHHHHTCEEEEEECC-------------CT
T ss_pred HHHhcCCCCEEEEecccccccHHHhccccccchHHHHHHHHHHHHHHHHHHHhhcCchhhhhheeeccCccccCCceecc
Confidence 333 345899999999766521 0 00 0 23456889999988776444322 22
Q ss_pred ---ccccccccccEEEe-C--------ChHHHHHHHHHhhhccCCCCCceEEEEEE-cCce
Q 026207 149 ---ILSDLIGGVDTVTL-G--------DEEARARRCQKSILERKAPPTFYFLIEMR-ERHY 196 (241)
Q Consensus 149 ---~l~~l~~~~d~V~~-~--------~~~~~~~~~~~~~k~r~g~~~~~~~fe~~-~~g~ 196 (241)
.+.|. ++.++. . +.....+...+..|||++++.....|++. ++|+
T Consensus 212 GG~al~~~---ss~rl~l~k~~~~kdg~~~iG~~~~~kv~Knr~~~p~~~a~f~I~~~~GI 269 (269)
T d1mo6a1 212 GGKALKFY---ASVRMDVRRVETLKDGTNAVGNRTRVKVVKNKCLAPFKQAEFDILYGKGI 269 (269)
T ss_dssp THHHHHHH---CSEEEEEEEEECCBCSSSBCEEEEEEEEEEESSSCSCEEEEEEEETTTEE
T ss_pred cccceeee---eeEEEEEEecceeccCCceEEEEEEEEEEECCCCCCCCEEEEEEEeCCcC
Confidence 24444 555554 1 11111112356779999999888889987 6664
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=98.66 E-value=1.1e-08 Score=84.88 Aligned_cols=156 Identities=15% Similarity=0.128 Sum_probs=87.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCC---------cccHHHHHH
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEP---------SLQHKVMIE 98 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~ 98 (241)
++.|.||+||||||++.+++...... |..++|+|....+... ++.++++... ..++..+++
T Consensus 59 itei~G~~~sGKT~l~l~~~~~aqk~-g~~v~yiDtE~~~~~~---------~a~~~Gvd~d~i~~~~~~~~E~~~~~~~ 128 (268)
T d1xp8a1 59 ITEIYGPESGGKTTLALAIVAQAQKA-GGTCAFIDAEHALDPV---------YARALGVNTDELLVSQPDNGEQALEIME 128 (268)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEEESSCCCCHH---------HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred EEEEecCCccchHHHHHHHHHHHHhC-CCEEEEEECCccCCHH---------HHHHhCCCchhEEEEcCCCHHHHHHHHH
Confidence 89999999999999999999887654 7889999944333110 1112222111 112223333
Q ss_pred HHH-hcCCcEEEEcCCCCHHh-------H---------HH----H----HHHHhCCcEEEEeecCCChhhhh-cCC----
Q 026207 99 AVE-NHMPEVIIVDEIGTEAE-------A---------HA----C----RSIAERGVMLIGTAHGEWLENII-KNP---- 148 (241)
Q Consensus 99 ~~l-~~~p~vlilDE~~~~~d-------~---------~~----~----~~~~~~g~~vi~t~H~~~~~~~~-~~p---- 148 (241)
.+. ...++++|+|++.+... . .. + ..+...+++++.|-|..+-.+.. ..|
T Consensus 129 ~l~~~~~~~liIiDSi~al~~r~e~~~~~~~~~~~~~a~~l~~~lr~l~~~~~~~~~~vi~tNQv~~~~g~~~g~~~~~~ 208 (268)
T d1xp8a1 129 LLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVREKIGVMYGNPETTT 208 (268)
T ss_dssp HHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC---------------
T ss_pred HHHhcCCCcEEEEecccccccHHHHcccccchhHHHHHHHHHHHHHHHHhhhhhcCCeEEEEeEEeeccccccCcceeec
Confidence 333 34689999999876441 0 00 1 12446788999999988544432 222
Q ss_pred ---ccccccccccEEEe----CChHH------HHHHHHHhhhccCCCCCceEEEEEE-cCce
Q 026207 149 ---ILSDLIGGVDTVTL----GDEEA------RARRCQKSILERKAPPTFYFLIEMR-ERHY 196 (241)
Q Consensus 149 ---~l~~l~~~~d~V~~----~~~~~------~~~~~~~~~k~r~g~~~~~~~fe~~-~~g~ 196 (241)
.+.|. ++..+. ++... ..+-..+.+|||+++|.....|.+. .+|+
T Consensus 209 GG~al~~~---ss~rl~l~k~~~~~k~~~~~iG~~v~~kv~Knr~~~p~~~~~~~i~~~~Gi 267 (268)
T d1xp8a1 209 GGRALKFY---ASVRLDVRKIGQPTKVGNDAVANTVKIKTVKNKVAAPFKEVELALVYGKGF 267 (268)
T ss_dssp CHHHHHHH---CSEEEEEEEESCCC------CEEEEEEEEEEESSSCCCCEEEEEEETTTEE
T ss_pred ccchhhhc---eeEEEEEEecCcccccCCceEEEEEEEEEEECCcCCCCCEEEEEEecCCCC
Confidence 23344 555444 22110 0001245678999999878888887 5564
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=98.64 E-value=3.4e-08 Score=83.71 Aligned_cols=104 Identities=15% Similarity=0.162 Sum_probs=65.1
Q ss_pred eeeccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHh
Q 026207 23 KIIFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVEN 102 (241)
Q Consensus 23 ~~~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 102 (241)
..+.|++|++||||||||.+.+++++.+... ...+.+. +.++... .. .....+.+.++..+.
T Consensus 120 ~~~~g~~l~~G~pG~GKT~la~ala~~~~~~--~~~~~~~-~~~~~~~------~~--------G~~e~~~~~~f~~a~- 181 (321)
T d1w44a_ 120 RYASGMVIVTGKGNSGKTPLVHALGEALGGK--DKYATVR-FGEPLSG------YN--------TDFNVFVDDIARAML- 181 (321)
T ss_dssp EEESEEEEEECSSSSCHHHHHHHHHHHHHTT--SCCEEEE-BSCSSTT------CB--------CCHHHHHHHHHHHHH-
T ss_pred ccCCceEEEECCCCccHHHHHHHHHHHhcCC--CCeEEEE-hhHhhhc------cc--------chHHHHHHHHHHHHh-
Confidence 4677788889999999999999999987533 2335566 5554211 11 112345666777764
Q ss_pred cCCcEEEEcCCCCHHhH-----------HHHH--------HHHhCCcEEEEeecCCChhhhh
Q 026207 103 HMPEVIIVDEIGTEAEA-----------HACR--------SIAERGVMLIGTAHGEWLENII 145 (241)
Q Consensus 103 ~~p~vlilDE~~~~~d~-----------~~~~--------~~~~~g~~vi~t~H~~~~~~~~ 145 (241)
+|.+||+||+.+..-. +.+. .....|+.+|+++...+..+.+
T Consensus 182 -~~~ilf~DEid~~~~~r~~~~~~~~~~r~v~~lL~e~dg~~~~~~v~viaatN~~~~~~~i 242 (321)
T d1w44a_ 182 -QHRVIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNPTSNDDKI 242 (321)
T ss_dssp -HCSEEEEECCTTTC-----------CCHHHHHHHHHHHHHHHHHTCEEEEECCCCCCCHHH
T ss_pred -hccEEEeehhhhhccccccCCCCCcchhhhhhhhhhccccccCCCeEEEEeCCCcccccch
Confidence 3789999998654222 1111 1234578888887755444444
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=98.62 E-value=3.3e-08 Score=81.52 Aligned_cols=35 Identities=23% Similarity=0.294 Sum_probs=29.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
+++|.|+||+||||++.+++..+....|.+|++++
T Consensus 37 l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s 71 (277)
T d1cr2a_ 37 VIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (277)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHhhhhhcccceeEee
Confidence 89999999999999999999765444468888886
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=98.59 E-value=1.1e-08 Score=83.95 Aligned_cols=68 Identities=25% Similarity=0.340 Sum_probs=48.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCcE
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEV 107 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~v 107 (241)
-+||.||||||||+++++++..+. ..+++++ ...+.. ..+.......+.++..+..+.|.+
T Consensus 44 giLl~GppGtGKT~la~aia~~~~----~~~~~i~-~~~l~~--------------~~~g~~~~~l~~~f~~a~~~~p~I 104 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEAR----VPFITAS-GSDFVE--------------MFVGVGAARVRDLFETAKRHAPCI 104 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT----CCEEEEE-HHHHHH--------------SCTTHHHHHHHHHHHHHTTSSSEE
T ss_pred eEEEecCCCCChhHHHHHHHHHcC----CCEEEEE-hHHhhh--------------ccccHHHHHHHHHHHHHHHcCCEE
Confidence 589999999999999999998763 5678777 333210 001111234556778888889999
Q ss_pred EEEcCCC
Q 026207 108 IIVDEIG 114 (241)
Q Consensus 108 lilDE~~ 114 (241)
|++||+-
T Consensus 105 i~iDeid 111 (247)
T d1ixza_ 105 VFIDEID 111 (247)
T ss_dssp EEEETHH
T ss_pred EEEEChh
Confidence 9999974
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=98.54 E-value=1.7e-08 Score=82.67 Aligned_cols=70 Identities=17% Similarity=0.153 Sum_probs=47.4
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPE 106 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~ 106 (241)
..+||+||||||||+++++++..+. ..++.++.+..+.+.. + .+.....+.++..+....|.
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~~~----~~~~~i~~~~~~~g~~-------~-------~~~~~~i~~if~~A~~~~p~ 102 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEESN----FPFIKICSPDKMIGFS-------E-------TAKCQAMKKIFDDAYKSQLS 102 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT----CSEEEEECGGGCTTCC-------H-------HHHHHHHHHHHHHHHTSSEE
T ss_pred eEEEEECcCCCCHHHHHHHHhhccc----cccccccccccccccc-------c-------cchhhhhhhhhhhhhhcccc
Confidence 4689999999999999999998763 4567666222111000 0 00012345677888888999
Q ss_pred EEEEcCCC
Q 026207 107 VIIVDEIG 114 (241)
Q Consensus 107 vlilDE~~ 114 (241)
+|++||+-
T Consensus 103 il~iDEid 110 (246)
T d1d2na_ 103 CVVVDDIE 110 (246)
T ss_dssp EEEECCHH
T ss_pred eeehhhhh
Confidence 99999973
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.52 E-value=3.4e-08 Score=81.28 Aligned_cols=70 Identities=26% Similarity=0.382 Sum_probs=49.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCcE
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEV 107 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~v 107 (241)
-+||.||||||||+++++++.... ..+++++ ...+... . ........+..+..+..+.|.+
T Consensus 40 giLL~GppGtGKT~l~~ala~~~~----~~~~~i~-~~~l~~~------~--------~g~~~~~l~~~f~~A~~~~p~i 100 (258)
T d1e32a2 40 GILLYGPPGTGKTLIARAVANETG----AFFFLIN-GPEIMSK------L--------AGESESNLRKAFEEAEKNAPAI 100 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT----CEEEEEC-HHHHTTS------C--------TTHHHHHHHHHHHHHHHTCSEE
T ss_pred eeEEecCCCCCchHHHHHHHHHhC----CeEEEEE-chhhccc------c--------cccHHHHHHHHHHHHHhcCCeE
Confidence 479999999999999999999864 5667776 4433111 0 0011234556778888899999
Q ss_pred EEEcCCCCH
Q 026207 108 IIVDEIGTE 116 (241)
Q Consensus 108 lilDE~~~~ 116 (241)
|++||+-..
T Consensus 101 l~iDeid~l 109 (258)
T d1e32a2 101 IFIDELDAI 109 (258)
T ss_dssp EEESSGGGT
T ss_pred EEehhhhhh
Confidence 999998654
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.45 E-value=4e-07 Score=73.19 Aligned_cols=164 Identities=13% Similarity=0.120 Sum_probs=83.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcccc-----CCCeEEEEcCCcccCCCC---------CCccccccchhhcCCCCCcc--
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDE-----FQKRVVIVDTSNEIGGDG---------DIPHSAIGTARRMQVPEPSL-- 91 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~-----~g~~v~~i~~~~e~~~~~---------~~~~~~~~~~~~~~~~~~~~-- 91 (241)
+++|.||||+||||+..+++...... .+..+++++...+..... ..+.................
T Consensus 38 ~~li~G~pGsGKT~~~lq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (254)
T d1pzna2 38 ITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQM 117 (254)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHGGGEEEEECCSHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhhchHHhcCCCceEEEEeccchhHHHHHHHHHHhcCCChHHhhhhhhhhhhccchhHH
Confidence 89999999999999999998765421 245778887433321000 00000000000000000000
Q ss_pred -cHHHHHHHH-----HhcCCcEEEEcCCCCHHhH------------H----HH----HHHHhCCcEEEEeecCCChhhhh
Q 026207 92 -QHKVMIEAV-----ENHMPEVIIVDEIGTEAEA------------H----AC----RSIAERGVMLIGTAHGEWLENII 145 (241)
Q Consensus 92 -~~~~~~~~~-----l~~~p~vlilDE~~~~~d~------------~----~~----~~~~~~g~~vi~t~H~~~~~~~~ 145 (241)
......... ....+.++++|.+...... . .. ......+++++.+.|..+-.+..
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~viDs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 197 (254)
T d1pzna2 118 LLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAF 197 (254)
T ss_dssp HHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC------
T ss_pred HHHHhhhhhhHHHHhhccCceeEeecchhheeehhhcccchhhhhHHHHHHHHHHHHHHhhccceEEEecceEeeccCcc
Confidence 000011111 1235689999998765322 0 01 12344567777777765421111
Q ss_pred --------cCCccccccccccEEEe-CChHHHHHHHHHhhhccCCCCCceEEEEEEcCce
Q 026207 146 --------KNPILSDLIGGVDTVTL-GDEEARARRCQKSILERKAPPTFYFLIEMRERHY 196 (241)
Q Consensus 146 --------~~p~l~~l~~~~d~V~~-~~~~~~~~~~~~~~k~r~g~~~~~~~fe~~~~g~ 196 (241)
....+++. +|.++. ...... .|.++..|+|.++.+. ..|++++.|+
T Consensus 198 ~~~~~~~~~~~~~~~~---~~~~l~l~~~~~~-~R~~~v~K~R~~~~~~-~~f~It~~Gi 252 (254)
T d1pzna2 198 FGDPTRPIGGHILAHS---ATLRVYLRKGKGG-KRIARLIDAPHLPEGE-AVFSITEKGI 252 (254)
T ss_dssp ---------CCCCCTT---CSEEEEEEECTTS-EEEEEESCSSSSCCSE-EEEEEETTEE
T ss_pred cCCceeecCceeehhh---ceEEEEEEecCCC-eEEEEEEECCCCCCeE-EEEEECCCCc
Confidence 11134455 787776 111111 2677888999887764 5799998886
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.44 E-value=7.7e-08 Score=79.46 Aligned_cols=68 Identities=24% Similarity=0.329 Sum_probs=49.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCcE
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEV 107 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~v 107 (241)
.+||.||||+|||+++++++..+. ..+++++ ...+.. ..........+.++..+..+.|.+
T Consensus 43 giLL~Gp~GtGKT~l~~ala~~~~----~~~~~~~-~~~l~~--------------~~~~~~~~~l~~~f~~A~~~~p~i 103 (265)
T d1r7ra3 43 GVLFYGPPGCGKTLLAKAIANECQ----ANFISIK-GPELLT--------------MWFGESEANVREIFDKARQAAPCV 103 (265)
T ss_dssp EEEEBCCTTSSHHHHHHHHHHHTT----CEEEEEC-HHHHHT--------------SCTTTHHHHHHHHHHHHHHTCSEE
T ss_pred eEEEECCCCCcchhHHHHHHHHhC----CcEEEEE-HHHhhh--------------ccccchHHHHHHHHHHHHhcCCcc
Confidence 589999999999999999999874 5667776 333211 011111345566788888899999
Q ss_pred EEEcCCC
Q 026207 108 IIVDEIG 114 (241)
Q Consensus 108 lilDE~~ 114 (241)
+++||+-
T Consensus 104 l~ideid 110 (265)
T d1r7ra3 104 LFFDELD 110 (265)
T ss_dssp EEESSGG
T ss_pred eeHHhhh
Confidence 9999975
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.42 E-value=2.4e-07 Score=73.91 Aligned_cols=166 Identities=13% Similarity=0.040 Sum_probs=87.2
Q ss_pred eecc-EEEEEeCCCchHHHHHHHHHHhccc-----cCCCeEEEEcCCcccCCCCC---------CccccccchhhcCCCC
Q 026207 24 IIFD-FFLSYFRPGVGKTTVMREIARVLSD-----EFQKRVVIVDTSNEIGGDGD---------IPHSAIGTARRMQVPE 88 (241)
Q Consensus 24 ~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~-----~~g~~v~~i~~~~e~~~~~~---------~~~~~~~~~~~~~~~~ 88 (241)
++.| +++|+||||+||||++.+++..... ..+..++|++.......... .......+........
T Consensus 31 i~~G~~~li~G~pGsGKT~l~lq~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (251)
T d1szpa2 31 VETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYN 110 (251)
T ss_dssp EESSSEEEEEESTTSSHHHHHHHHTTTTTSCTTTTCCSCEEEEEESSSCCCGGGGHHHHHHTCCCHHHHGGGEEEEECCS
T ss_pred CcCCeEEEEEcCCCCCHHHHHHHHHHHhhhhhhhccCCceEEEEeecchHHHHHHHHHHHhcCCchhhhhcceEEEeccc
Confidence 4444 8999999999999999998865421 12467888884333211100 0000000000001111
Q ss_pred Cc---ccHHHHHHHHHhcCCcEEEEcCCCCHHhH--------------------HHHHHHHhCCcEEEEeecCCChhhhh
Q 026207 89 PS---LQHKVMIEAVENHMPEVIIVDEIGTEAEA--------------------HACRSIAERGVMLIGTAHGEWLENII 145 (241)
Q Consensus 89 ~~---~~~~~~~~~~l~~~p~vlilDE~~~~~d~--------------------~~~~~~~~~g~~vi~t~H~~~~~~~~ 145 (241)
.. .......+......+.++++|.+...... .....+...+++++.+.|.....+..
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 190 (251)
T d1szpa2 111 ADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGG 190 (251)
T ss_dssp TTTHHHHHHHTHHHHHHSCEEEEEEETGGGGGSCC-----CTHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECC------
T ss_pred hhHHHHHHHHHHHHhhccccceeeehhhhhhhhhhhccccchhhHHHHHHHHHHHHHhhhhhcceEEEEEEEEEeccCcc
Confidence 11 11222334444567788999987544211 01113344567777766665422211
Q ss_pred c-------CC----ccccccccccEEEe---CChHHHHHHHHHhhhccCCCCCceEEEEEEcCce
Q 026207 146 K-------NP----ILSDLIGGVDTVTL---GDEEARARRCQKSILERKAPPTFYFLIEMRERHY 196 (241)
Q Consensus 146 ~-------~p----~l~~l~~~~d~V~~---~~~~~~~~~~~~~~k~r~g~~~~~~~fe~~~~g~ 196 (241)
. .| .+.+. ++.++. .++. .|.++..|+|+++... ..|++++.|+
T Consensus 191 ~~~~~~~~~~~gg~~~~~~---~~~~i~l~~~~~~---~r~l~i~K~r~~~~~~-~~f~It~~Gi 248 (251)
T d1szpa2 191 MAFNPDPKKPTGGNIMAHS---STTRLGFKKGKGC---QRLCKVVDSPCLPEAE-CVFAIYEDGV 248 (251)
T ss_dssp ----------CHHHHHHHH---CSEEEEEEECSTT---EEEEECCSCSSSCCCC-CCEEEETTEE
T ss_pred ccccCcceeccCccchhhh---eeEEEEEEecCCc---EEEEEEEECCCCCCee-EEEEEcCCCc
Confidence 1 11 24555 777765 2322 2778888999887664 4699998886
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=98.32 E-value=4.2e-07 Score=77.23 Aligned_cols=100 Identities=19% Similarity=0.219 Sum_probs=55.9
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEE--EEcCCcccCC-----CCCCcc----ccccchhhcCCC--CCc--
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVV--IVDTSNEIGG-----DGDIPH----SAIGTARRMQVP--EPS-- 90 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~--~i~~~~e~~~-----~~~~~~----~~~~~~~~~~~~--~~~-- 90 (241)
.-.|.|+||||+|||||+..++..+... |.+|. .++......+ +..... ....+.+..... -++
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~~~~-g~~vavlavDpss~~~ggailgdr~rm~~~~~~~~~~ir~~~~~g~lgg~~ 132 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLLIRE-GLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGAS 132 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHHHT-TCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CHH
T ss_pred ceEEEeeCCCCCCHHHHHHHHHHHHHhc-CCceeeecCCCceeeeccccccchhHHHHhcccccccccccccccccccch
Confidence 3479999999999999999999888655 55654 4443222211 100000 000000011110 001
Q ss_pred ccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHHHHH
Q 026207 91 LQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIA 126 (241)
Q Consensus 91 ~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~~~~ 126 (241)
......+..+...+.|++++..++.+.....+....
T Consensus 133 ~~~~~~~~~~~~~g~d~iliEtvG~gq~e~~i~~~a 168 (327)
T d2p67a1 133 QRARELMLLCEAAGYDVVIVETVGVGQSETEVARMV 168 (327)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEEECCTTHHHHHHTTC
T ss_pred hhhhHHHHHHHhcCCCeEEEeeccccccchhhhhcc
Confidence 134456666667789999999999998765554443
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=98.32 E-value=2.3e-07 Score=78.23 Aligned_cols=38 Identities=24% Similarity=0.341 Sum_probs=29.6
Q ss_pred eccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCccc
Q 026207 25 IFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEI 67 (241)
Q Consensus 25 ~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~ 67 (241)
+.+.+||+||||||||.|+++++..+. ...+.++ ..++
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~~~----~~~~~i~-~s~~ 85 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKLAN----APFIKVE-ATKF 85 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHT----CCEEEEE-GGGG
T ss_pred CCceEEEECCCCCCHHHHHHHHhhccc----cchhccc-cccc
Confidence 445788999999999999999999864 3456666 5554
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=98.31 E-value=1.9e-07 Score=70.51 Aligned_cols=36 Identities=19% Similarity=0.305 Sum_probs=30.7
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
.+++.|+|++|||||||++.|+..+... |.++.++.
T Consensus 2 ~Pvi~itG~~GSGKTTL~~~L~~~l~~~-g~~v~v~~ 37 (170)
T d1np6a_ 2 IPLLAFAAWSGTGKTTLLKKLIPALCAR-GIRPGLIK 37 (170)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHC-CCeEEEec
Confidence 3689999999999999999999988766 67776664
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.21 E-value=5.5e-06 Score=66.11 Aligned_cols=166 Identities=14% Similarity=0.050 Sum_probs=83.4
Q ss_pred eecc-EEEEEeCCCchHHHHHHHHHHhcccc-----CCCeEEEEcCCcccCCCC---------CCccccccchhhcCCCC
Q 026207 24 IIFD-FFLSYFRPGVGKTTVMREIARVLSDE-----FQKRVVIVDTSNEIGGDG---------DIPHSAIGTARRMQVPE 88 (241)
Q Consensus 24 ~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~-----~g~~v~~i~~~~e~~~~~---------~~~~~~~~~~~~~~~~~ 88 (241)
++.| +++|.||||+|||++..+++...... ....+.+++......... ................+
T Consensus 34 ip~G~~~~i~G~~GsGKT~lalq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (258)
T d1v5wa_ 34 IESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYT 113 (258)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHHHHHhhhhcccccceEEEechHHHHHHHHHHHHHhhhcccchhhhhcccccccCc
Confidence 4444 89999999999999999998754321 234677777433321000 00000000000011111
Q ss_pred CcccH---HHHHHHHH--hcCCcEEEEcCCCCHHhH--------------------HHHHHHHhCCcEEEEeecCCChhh
Q 026207 89 PSLQH---KVMIEAVE--NHMPEVIIVDEIGTEAEA--------------------HACRSIAERGVMLIGTAHGEWLEN 143 (241)
Q Consensus 89 ~~~~~---~~~~~~~l--~~~p~vlilDE~~~~~d~--------------------~~~~~~~~~g~~vi~t~H~~~~~~ 143 (241)
..... ........ ...++++++|.+.+.... .....+...+++++.+.|..+..+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~vid~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~~~~~ 193 (258)
T d1v5wa_ 114 SEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPG 193 (258)
T ss_dssp TTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC-----
T ss_pred HHHHHHHHHHHHHHhhhhccCceEEEeeehhhhhhccccCCcchhHHHHHHHHHHHHHHHHHHhcCCEEEEeeeEeeccc
Confidence 11111 11111111 234689999998765322 001134556888888777654221
Q ss_pred hh-----------cCCccccccccccEEEe---CChHHHHHHHHHhhhccCCCCCceEEEEEEcCce
Q 026207 144 II-----------KNPILSDLIGGVDTVTL---GDEEARARRCQKSILERKAPPTFYFLIEMRERHY 196 (241)
Q Consensus 144 ~~-----------~~p~l~~l~~~~d~V~~---~~~~~~~~~~~~~~k~r~g~~~~~~~fe~~~~g~ 196 (241)
.. .+..+.+. +|.++. .++.. |.++..|+|..+.. ...|+++..|+
T Consensus 194 ~~~~~~~~~~~~~~g~~~~~~---~~~~l~l~~~~~~~---R~l~i~K~r~~~~~-~~~F~It~~GI 253 (258)
T d1v5wa_ 194 ATMTFQADPKKPIGGHILAHA---STTRISLRKGRGEL---RIAKIYDSPEMPEN-EATFAITAGGI 253 (258)
T ss_dssp --------------CCTTTTS---SSEEEEEEESSTTE---EEEEEEECTTCCSS-CEEEEEETTEE
T ss_pred ccccccCCceeecccceehhe---eEEEEEEEEcCCCE---EEEEEEeCCCCCCc-EEEEEEcCCCc
Confidence 11 11123444 787776 23221 66667788876544 34699998887
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.19 E-value=1.4e-06 Score=70.07 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=20.9
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHh
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~ 49 (241)
..+++|+|||.+||||++++++-.
T Consensus 35 ~~~~iiTGpN~~GKSt~lk~i~l~ 58 (224)
T d1ewqa2 35 HELVLITGPNMAGKSTFLRQTALI 58 (224)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCccccchhhhhhHHH
Confidence 447999999999999999987754
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.19 E-value=4.7e-06 Score=64.34 Aligned_cols=164 Identities=13% Similarity=0.027 Sum_probs=77.8
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhcccc-----CCCeEEEEcCCcccCCCCCCcc-cccc-----chhhcCC---CCC--
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDE-----FQKRVVIVDTSNEIGGDGDIPH-SAIG-----TARRMQV---PEP-- 89 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~-----~g~~v~~i~~~~e~~~~~~~~~-~~~~-----~~~~~~~---~~~-- 89 (241)
..+++|+||||+||||++.+++...... .+....+++............. .... ....... ...
T Consensus 23 G~v~~i~G~~GsGKT~l~l~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (242)
T d1n0wa_ 23 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDH 102 (242)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHHH
T ss_pred CEEEEEEeCCCCCHHHHHHHHHHHHHHhhccccccceehhhhhhhhhHHHHHHHHHhhcccchhhhhhhhhhhhhhchhh
Confidence 3389999999999999999999866433 1123344442222110000000 0000 0000000 000
Q ss_pred -cccHHHHHHHHHhcCCcEEEEcCCCCHHhH----------------H----HHHHHHhCCcEEEEeecCCChhhhh---
Q 026207 90 -SLQHKVMIEAVENHMPEVIIVDEIGTEAEA----------------H----ACRSIAERGVMLIGTAHGEWLENII--- 145 (241)
Q Consensus 90 -~~~~~~~~~~~l~~~p~vlilDE~~~~~d~----------------~----~~~~~~~~g~~vi~t~H~~~~~~~~--- 145 (241)
.................++..|.+...... . ....+...++.++.+.|.....+..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (242)
T d1n0wa_ 103 QTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMF 182 (242)
T ss_dssp HHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC------------
T ss_pred hhhhhhhhhhhhhhhhheeecccceeeeehhhhhcccchhhhHHHHHHHHHHHHHhhhhcceeEEEEEEEecccccccee
Confidence 011122223333455677888876443221 0 0113344577777777765422111
Q ss_pred -------c-CCccccccccccEEEe---CChHHHHHHHHHhhhccCCCCCceEEEEEEcCce
Q 026207 146 -------K-NPILSDLIGGVDTVTL---GDEEARARRCQKSILERKAPPTFYFLIEMRERHY 196 (241)
Q Consensus 146 -------~-~p~l~~l~~~~d~V~~---~~~~~~~~~~~~~~k~r~g~~~~~~~fe~~~~g~ 196 (241)
. ...+.+. +|.++. .++. .|.++..|+|.++.. ...|++++.|+
T Consensus 183 ~~~~~~~~~~~~l~~~---~~~~i~l~~~~~~---~r~~~i~K~r~~~~~-~~~f~I~~~Gi 237 (242)
T d1n0wa_ 183 AADPKKPIGGNIIAHA---STTRLYLRKGRGE---TRICKIYDSPCLPEA-EAMFAINADGV 237 (242)
T ss_dssp -------------CCT---TCEEEEEEECSTT---EEEEEECCBTTBSCE-EEEEEEETTEE
T ss_pred ecccccccchhhHHHh---CcEEEEEEEcCCc---EEEEEEEeCCCCCCe-EEEEEEcCCce
Confidence 0 1134555 787776 3322 267778899987765 46799999887
|
| >d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.19 E-value=5.1e-06 Score=61.20 Aligned_cols=124 Identities=15% Similarity=0.097 Sum_probs=67.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCcE
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEV 107 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~v 107 (241)
+-+++||..|||||-|...+...... |++++.+....+............+......+... ..... ...++++
T Consensus 4 L~li~GpMfsGKTt~Li~~~~~~~~~-g~~v~~ikp~~D~R~~~~~~~~~~~~~~~~~~~~~----~~~~~--~~~~~d~ 76 (133)
T d1xbta1 4 IQVILGPMFSGKSTELMRRVRRFQIA-QYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLL----RDVAQ--EALGVAV 76 (133)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTT-TCCEEEEEETTCCC--------------CEEESSG----GGGHH--HHHTCSE
T ss_pred EEEEEecccCHHHHHHHHHHHHHHHc-CCcEEEEecccccCCcceeeecCCCcceeeeeech----hhhhh--hhcccce
Confidence 67899999999999998888776544 67788776333222111000000000001111111 11111 1247999
Q ss_pred EEEcCCCCHHhHH-HHHHHHhCCcEEEEeecCCChhhhhcCC--ccccccccccEEE
Q 026207 108 IIVDEIGTEAEAH-ACRSIAERGVMLIGTAHGEWLENIIKNP--ILSDLIGGVDTVT 161 (241)
Q Consensus 108 lilDE~~~~~d~~-~~~~~~~~g~~vi~t~H~~~~~~~~~~p--~l~~l~~~~d~V~ 161 (241)
|++||.|=..|.. .+..+.+.|+.|++. +.+ .+.-.+| .+.+|+.-||.|.
T Consensus 77 I~IDEaQFf~dl~~~~~~~~~~~~~Viv~--GLd-~Df~~~~F~~~~~Ll~~Ad~I~ 130 (133)
T d1xbta1 77 IGIDEGQFFPDIVEFCEAMANAGKTVIVA--ALD-GTFQRKPFGAILNLVPLAESVV 130 (133)
T ss_dssp EEESSGGGCTTHHHHHHHHHHTTCEEEEE--CCS-BCTTSSBCTTGGGGGGGCSEEE
T ss_pred EEeehhHHHHHHHHHHHHHHhcCCcEEEE--Eec-cccccCcchhHHHHHHhcCEEE
Confidence 9999998665553 344566779998773 333 3333333 5566665588875
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=98.16 E-value=1.6e-06 Score=73.37 Aligned_cols=128 Identities=20% Similarity=0.258 Sum_probs=66.6
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEE--EEcCCcccCCCCCCccccccchhhcCC---------CCCc-----
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVV--IVDTSNEIGGDGDIPHSAIGTARRMQV---------PEPS----- 90 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~--~i~~~~e~~~~~~~~~~~~~~~~~~~~---------~~~~----- 90 (241)
..+.|+||||+|||||+..++..+... |.+|. .+|......+.. ... ...++..... .+.+
T Consensus 52 ~~igitG~pGaGKSTli~~l~~~~~~~-g~~vaViavDpss~~~gg~-llg-dr~rm~~~~~~~~~~ir~~~~~~~~gg~ 128 (323)
T d2qm8a1 52 IRVGITGVPGVGKSTTIDALGSLLTAA-GHKVAVLAVDPSSTRTGGS-ILG-DKTRMARLAIDRNAFIRPSPSSGTLGGV 128 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEEEECGGGGSSCCC-SSC-CGGGSTTGGGCTTEEEECCCCCSSHHHH
T ss_pred eEEeeeCCCCCCHHHHHHHHHHHHhhc-CCceeeeecccccHHHHhc-ccc-chhhHHHHhcccceeeccccccccccch
Confidence 479999999999999999999876543 45554 444222221111 000 0000000000 0001
Q ss_pred -ccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHHHHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 91 -LQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 91 -~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
...+..+..+...+.|++|+.-++.+............-..++...-+.+.+ ...+.+-++ +|-+++
T Consensus 129 ~~~~~~~i~~~~~~g~d~iiiETVG~gq~e~~~~~~~D~~v~v~~p~~GD~iQ--~~k~gilE~---aDi~vv 196 (323)
T d2qm8a1 129 AAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQ--GIKKGIFEL---ADMIAV 196 (323)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC--------CCTTHHHH---CSEEEE
T ss_pred hHHHHHHHHhhccCCCCeEEEeehhhhhhhhhhhcccceEEEEeeccchhhhh--hhhhhHhhh---hheeeE
Confidence 1334445555667899999999999887665554433212222212122211 112344455 898888
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=98.12 E-value=1.7e-06 Score=68.61 Aligned_cols=86 Identities=20% Similarity=0.314 Sum_probs=51.2
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCC----CCcccHHHH----HH
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVP----EPSLQHKVM----IE 98 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~----~~ 98 (241)
.+++++||||+||||++-.||..+... |.+|..+... ...... ..|...++..+.+. ......... ..
T Consensus 7 ~vi~lvGptGvGKTTTiaKLA~~~~~~-g~kV~lit~D-t~R~gA--~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~~~ 82 (207)
T d1okkd2 7 RVVLVVGVNGVGKTTTIAKLGRYYQNL-GKKVMFCAGD-TFRAAG--GTQLSEWGKRLSIPVIQGPEGTDPAALAYDAVQ 82 (207)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEEECCC-CSSTTH--HHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHC-CCcEEEEEec-cccccc--hhhHhhcccccCceEEeccCCccHHHHHHHHHH
Confidence 588999999999999999999887654 7888877622 211110 11211222222221 112222222 23
Q ss_pred HHHhcCCcEEEEcCCCCH
Q 026207 99 AVENHMPEVIIVDEIGTE 116 (241)
Q Consensus 99 ~~l~~~p~vlilDE~~~~ 116 (241)
.....+.|++++|-++..
T Consensus 83 ~~~~~~~d~ilIDTaGr~ 100 (207)
T d1okkd2 83 AMKARGYDLLFVDTAGRL 100 (207)
T ss_dssp HHHHHTCSEEEECCCCCC
T ss_pred HHHHCCCCEEEcCccccc
Confidence 344567899999999854
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=98.12 E-value=1.9e-06 Score=64.05 Aligned_cols=125 Identities=17% Similarity=0.159 Sum_probs=65.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCC-cccHHHHHHHH----Hh
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEP-SLQHKVMIEAV----EN 102 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----l~ 102 (241)
+-+++||..|||||-|...+...... +++++.+....+......+... .+. ..... -......+... ..
T Consensus 4 L~~i~GpMfsGKTteLi~~~~~~~~~-~~kv~~ikp~~D~R~~~~i~s~-~g~----~~~~~~~~~~~~~~~~~~~~~~~ 77 (139)
T d2b8ta1 4 IEFITGPMFAGKTAELIRRLHRLEYA-DVKYLVFKPKIDTRSIRNIQSR-TGT----SLPSVEVESAPEILNYIMSNSFN 77 (139)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHT-TCCEEEEEECCCGGGCSSCCCC-CCC----SSCCEEESSTHHHHHHHHSTTSC
T ss_pred EEEEEccccCHHHHHHHHHHHHHHHC-CCcEEEEEEcccccccceEEcc-cCc----eeeeEEeccchhhHHHHHhhccc
Confidence 57899999999999666666555433 6788777633332211111000 000 00000 01112222222 22
Q ss_pred cCCcEEEEcCCCCHHhH--HHHHHHHhCCcEEEEeecCCChhhhhcCC--ccccccccccEEE
Q 026207 103 HMPEVIIVDEIGTEAEA--HACRSIAERGVMLIGTAHGEWLENIIKNP--ILSDLIGGVDTVT 161 (241)
Q Consensus 103 ~~p~vlilDE~~~~~d~--~~~~~~~~~g~~vi~t~H~~~~~~~~~~p--~l~~l~~~~d~V~ 161 (241)
.++++|++||.|=..|. ..+..+.+.|+.|+...=..+ .-..| .+.+|+.-||.|.
T Consensus 78 ~~~dvI~IDE~QFf~d~i~~~~~~~~~~g~~Viv~GLd~D---f~~~~F~~~~~Li~~Ad~V~ 137 (139)
T d2b8ta1 78 DETKVIGIDEVQFFDDRICEVANILAENGFVVIISGLDKN---FKGEPFGPIAKLFTYADKIT 137 (139)
T ss_dssp TTCCEEEECSGGGSCTHHHHHHHHHHHTTCEEEEECCSBC---TTSSBCTTHHHHHHHCSEEE
T ss_pred cCcCEEEechhhhcchhHHHHHHHHHhcCceEEEEEeccc---cccCcCccHHHHHHhhCeEE
Confidence 46899999999865442 334455677999887433332 22233 4444444477664
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.10 E-value=6.3e-07 Score=67.99 Aligned_cols=33 Identities=30% Similarity=0.323 Sum_probs=27.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEE
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIV 61 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i 61 (241)
.|+|+||||+|||||++.++..+... +.++..+
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~-~~~v~~~ 35 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSS-GVPVDGF 35 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHT-TCCCEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHC-CCEEEEE
Confidence 48999999999999999999999766 4444433
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=98.10 E-value=2.1e-06 Score=68.22 Aligned_cols=85 Identities=21% Similarity=0.280 Sum_probs=51.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCC----CCCcccHHHH----HHH
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQV----PEPSLQHKVM----IEA 99 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~----~~~ 99 (241)
+++++||||+||||++-.||..+... +.+|..+. ........ ..|...++..+.+ .........+ ...
T Consensus 11 vi~lvGptGvGKTTTiAKLA~~~~~~-g~kV~lit-~Dt~R~gA--~eQL~~~a~~l~v~~~~~~~~~d~~~~l~~~~~~ 86 (211)
T d2qy9a2 11 VILMVGVNGVGKTTTIGKLARQFEQQ-GKSVMLAA-GDTFRAAA--VEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQA 86 (211)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTT-TCCEEEEC-CCTTCHHH--HHHHHHHHHHTTCCEECCSTTCCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCcEEEEe-cccccccc--hhhhhhhhhhcCCcccccccCCCHHHHHHHHHHH
Confidence 78999999999999999999888644 67888886 22221000 1111112222222 1222233322 333
Q ss_pred HHhcCCcEEEEcCCCCH
Q 026207 100 VENHMPEVIIVDEIGTE 116 (241)
Q Consensus 100 ~l~~~p~vlilDE~~~~ 116 (241)
+...+.|++++|-++..
T Consensus 87 a~~~~~d~ilIDTaGr~ 103 (211)
T d2qy9a2 87 AKARNIDVLIADTAGRL 103 (211)
T ss_dssp HHHTTCSEEEECCCCCG
T ss_pred HHHcCCCEEEeccCCCc
Confidence 45678899999999854
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=98.09 E-value=5.1e-06 Score=68.34 Aligned_cols=118 Identities=17% Similarity=0.238 Sum_probs=68.3
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcccc------CCCeEEEEcCCcccCCCCCCccccccchhhcCCCCC--cccHHHHHH
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDE------FQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEP--SLQHKVMIE 98 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~------~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 98 (241)
..++|+||||+|||+++..++..+... .+.+++.++ ...+... .. ..+ ..+.+.++.
T Consensus 40 ~n~lLVG~~GvGKTalv~~la~ri~~~~vp~~l~~~~i~~l~-~~~liag-------------~~-~~g~~e~r~~~i~~ 104 (268)
T d1r6bx2 40 NNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD-IGSLLAG-------------TK-YRGDFEKRFKALLK 104 (268)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECC-CC---CC-------------CC-CSSCHHHHHHHHHH
T ss_pred CCcEEECCCCCcHHHHHHHHHHHHHhCCcccccccceeEEee-echHhcc-------------Cc-cchhHHHHHHHHHH
Confidence 478999999999999999999887543 234555555 3222110 00 011 223444555
Q ss_pred HHHhcCCcEEEEcCCCCHH----------hHHHHH-HHHhC-CcEEEEeecCCChhhhhc-CCccccccccccEEEe
Q 026207 99 AVENHMPEVIIVDEIGTEA----------EAHACR-SIAER-GVMLIGTAHGEWLENIIK-NPILSDLIGGVDTVTL 162 (241)
Q Consensus 99 ~~l~~~p~vlilDE~~~~~----------d~~~~~-~~~~~-g~~vi~t~H~~~~~~~~~-~p~l~~l~~~~d~V~~ 162 (241)
.+...+.-++++||+.... |...+. -+..+ ...+|+++........++ .|.+.+. ++.|.+
T Consensus 105 ~~~~~~~iIlfiDeih~l~~~g~~~g~~~d~a~~Lkp~L~rg~i~vIgatT~eey~~~~e~d~al~rr---F~~I~V 178 (268)
T d1r6bx2 105 QLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARR---FQKIDI 178 (268)
T ss_dssp HHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEECHHHHHCCCCCTTSSGGG---EEEEEC
T ss_pred HhhccCCceEEecchHHHhcCCCCCCccccHHHHhhHHHhCCCCeEEEeCCHHHHHHHHhhcHHHHhh---hccccc
Confidence 5555566789999965442 222222 12233 466888665554333333 3567776 788887
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=98.08 E-value=3.1e-06 Score=67.15 Aligned_cols=162 Identities=14% Similarity=0.098 Sum_probs=81.5
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcccc---------------CCCeEEEEcCCcccCCCCCCc--ccccc-----chhhc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDE---------------FQKRVVIVDTSNEIGGDGDIP--HSAIG-----TARRM 84 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~---------------~g~~v~~i~~~~e~~~~~~~~--~~~~~-----~~~~~ 84 (241)
.+++|.|+||+||||++.+++...... .+.++.|++ .++........ ..... ...++
T Consensus 35 ~l~~i~G~~G~GKT~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (258)
T d2i1qa2 35 SVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYID-TEGTFRPERIMQMAEHAGIDGQTVLDNT 113 (258)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEE-SSSCCCHHHHHHHHHHHTCCHHHHHHTE
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhcCCCceEEeecccchhcCceEEEEE-ecCCcCHHHHHHHHhhcchhhhhhhhcc
Confidence 389999999999999999999766432 134567776 22111000000 00000 00001
Q ss_pred CCCC--CcccHHH----HHH-HHHhcCCcEEEEcCCCCHHhH--------------------HHHHHHHhCCcEEEEeec
Q 026207 85 QVPE--PSLQHKV----MIE-AVENHMPEVIIVDEIGTEAEA--------------------HACRSIAERGVMLIGTAH 137 (241)
Q Consensus 85 ~~~~--~~~~~~~----~~~-~~l~~~p~vlilDE~~~~~d~--------------------~~~~~~~~~g~~vi~t~H 137 (241)
.... ....+.. ... ......+..+++|.+...... .....+...+++++.+.|
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vid~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (258)
T d2i1qa2 114 FVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTNQ 193 (258)
T ss_dssp EEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred eeeccCchhhHHHHHHHHHHHHHHhcccceeeeeEEEEeechhccccccchhhHHHHHHHHHHHHHhhhhcceEEEeecc
Confidence 1100 0001111 111 112345678888988765433 001123345677666666
Q ss_pred CCChhhhhc-CC-------ccccccccccEEEe---CChHHHHHHHHHhhhccCCCCCceEEEEEEcCce
Q 026207 138 GEWLENIIK-NP-------ILSDLIGGVDTVTL---GDEEARARRCQKSILERKAPPTFYFLIEMRERHY 196 (241)
Q Consensus 138 ~~~~~~~~~-~p-------~l~~l~~~~d~V~~---~~~~~~~~~~~~~~k~r~g~~~~~~~fe~~~~g~ 196 (241)
..+..+... .+ .+.+. +|.++. .++. .|.+...|+|.++.. ...|++++.|+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~l~~~~~~---~r~l~v~K~R~~~~~-~~~f~I~~~Gi 256 (258)
T d2i1qa2 194 VSAKPDAFFGMAEQAIGGHIVGHA---ATFRFFVRKGKGD---KRVAKLYDSPHLPDA-EAIFRITEKGI 256 (258)
T ss_dssp EECC-------CCEESSHHHHHHH---CSEEEEEEECSTT---EEEEEEEECSSSCCE-EEEEEEETTEE
T ss_pred eEeccccccCCcccccCcchhhhh---ceEEEEEEEcCCC---EEEEEEEECCCCCCc-eEEEEECCCCc
Confidence 443221111 01 13344 788777 3322 267778899988765 46899998885
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=98.08 E-value=3.1e-06 Score=67.71 Aligned_cols=25 Identities=44% Similarity=0.489 Sum_probs=22.8
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
+.++|+||||+||||+++.++..+.
T Consensus 36 ~~~L~~GPpGtGKT~lA~~la~~~~ 60 (238)
T d1in4a2 36 DHVLLAGPPGLGKTTLAHIIASELQ 60 (238)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHhccC
Confidence 4689999999999999999999875
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=98.05 E-value=9.5e-07 Score=70.36 Aligned_cols=85 Identities=20% Similarity=0.170 Sum_probs=46.2
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCC----CCcccH----HHHHH
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVP----EPSLQH----KVMIE 98 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~----~~~~~~----~~~~~ 98 (241)
.+++++||||+||||++-.||..+... +.+|..+.......+. ..+...++..+++. ...... +..+.
T Consensus 13 ~vi~lvGptGvGKTTTiAKLA~~~~~~-g~kV~lit~Dt~R~ga---~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~a~~ 88 (211)
T d1j8yf2 13 YVIMLVGVQGTGKATTAGKLAYFYKKK-GFKVGLVGADVYRPAA---LEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVE 88 (211)
T ss_dssp EEEEEECSCCC----HHHHHHHHHHHT-TCCEEEEECCCSSHHH---HHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHC-CCceEEEEeeccccch---hHHHHHhccccCcceeecccchhhhHHHHHHHH
Confidence 378899999999999999999888654 6788877622211000 11111112222221 111122 22344
Q ss_pred HHHhcCCcEEEEcCCCC
Q 026207 99 AVENHMPEVIIVDEIGT 115 (241)
Q Consensus 99 ~~l~~~p~vlilDE~~~ 115 (241)
.+...+.+++++|-++.
T Consensus 89 ~~~~~~~d~IlIDTaGr 105 (211)
T d1j8yf2 89 KFLSEKMEIIIVDTAGR 105 (211)
T ss_dssp HHHHTTCSEEEEECCCS
T ss_pred HhhccCCceEEEecCCc
Confidence 44567889999999874
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=98.04 E-value=2.9e-06 Score=67.94 Aligned_cols=26 Identities=38% Similarity=0.611 Sum_probs=23.1
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhcc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
.+.++|+||||+||||+++++++.+.
T Consensus 35 ~~~~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 35 LEHLLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 34689999999999999999999764
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.00 E-value=5.3e-06 Score=66.93 Aligned_cols=24 Identities=25% Similarity=0.189 Sum_probs=20.9
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
.+++|+|||.+||||++|+++-..
T Consensus 42 ~~~iiTGpN~~GKSt~lk~i~l~~ 65 (234)
T d1wb9a2 42 RMLIITGPNMGGKSTYMRQTALIA 65 (234)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEeccCchhhHHHHHHHHHHH
Confidence 479999999999999999987643
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.97 E-value=2.3e-06 Score=64.85 Aligned_cols=34 Identities=26% Similarity=0.149 Sum_probs=29.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
++.|+|++|||||||+..++..+... |.+|..+.
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L~~~-g~~v~vik 36 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAAVRE-GWRVGTVK 36 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhC-CCeEEEEE
Confidence 67899999999999999999998766 67888774
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=97.97 E-value=3.2e-06 Score=67.05 Aligned_cols=87 Identities=17% Similarity=0.195 Sum_probs=51.6
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCC----CCcccHHH----HH
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVP----EPSLQHKV----MI 97 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~----~~ 97 (241)
..+++++||||+||||++-.||..+... +++|..+.. ..... +. ..+...++..+.+. ........ ..
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~~~~-g~kV~lit~-Dt~R~-gA-~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~~~ 85 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYYKGK-GRRPLLVAA-DTQRP-AA-REQLRLLGEKVGVPVLEVMDGESPESIRRRVE 85 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHT-TCCEEEEEC-CSSCH-HH-HHHHHHHHHHHTCCEEECCTTCCHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHC-CCcEEEEec-ccccc-hH-HHHHHHHHHhcCCccccccccchhhHHHHHHH
Confidence 3578999999999999999999988755 788887762 21110 00 11111122222221 11122222 23
Q ss_pred HHHHhcCCcEEEEcCCCCH
Q 026207 98 EAVENHMPEVIIVDEIGTE 116 (241)
Q Consensus 98 ~~~l~~~p~vlilDE~~~~ 116 (241)
..+...+.|++++|-++..
T Consensus 86 ~~~~~~~~d~vlIDTaGr~ 104 (207)
T d1ls1a2 86 EKARLEARDLILVDTAGRL 104 (207)
T ss_dssp HHHHHHTCCEEEEECCCCS
T ss_pred HHHhhccCcceeecccccc
Confidence 3445678899999998743
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=97.96 E-value=8.8e-06 Score=64.57 Aligned_cols=94 Identities=11% Similarity=0.192 Sum_probs=57.3
Q ss_pred EEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCcEE
Q 026207 29 FLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVI 108 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~vl 108 (241)
+.|.||+|+|||.|+.+++...... +.+++|++ ..+.. .... .....+ ........ ..+.+++
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~~~~~-~~~~~~~~-~~~~~------~~~~------~~~~~~-~~~~~~~~--~~~~dll 101 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNEAKKR-GYRVIYSS-ADDFA------QAMV------EHLKKG-TINEFRNM--YKSVDLL 101 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHHT-TCCEEEEE-HHHHH------HHHH------HHHHHT-CHHHHHHH--HHTCSEE
T ss_pred EEEECCCCCcHHHHHHHHHHHhccC-ccceEEec-hHHHH------HHHH------HHHHcc-chhhHHHH--Hhhccch
Confidence 7899999999999999999988655 67788887 33221 0000 000000 11111111 2478999
Q ss_pred EEcCCCCHHh---H-----HHHHHHHhCCcEEEEeecCC
Q 026207 109 IVDEIGTEAE---A-----HACRSIAERGVMLIGTAHGE 139 (241)
Q Consensus 109 ilDE~~~~~d---~-----~~~~~~~~~g~~vi~t~H~~ 139 (241)
+||++..... . ..+....+.|..+|+|+...
T Consensus 102 ~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~ 140 (213)
T d1l8qa2 102 LLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRH 140 (213)
T ss_dssp EEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred hhhhhhhhcCchHHHHHHHHHHHHHhhccceEEEecCCc
Confidence 9999974421 1 22235667788888877654
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=97.96 E-value=2.1e-06 Score=64.43 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=22.9
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
.+++|+|||||||||+++.|+..+.
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4799999999999999999999875
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.95 E-value=2.1e-06 Score=65.07 Aligned_cols=26 Identities=15% Similarity=0.167 Sum_probs=23.2
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhcc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
...|+|+||||||||||++.|+..+.
T Consensus 7 ~K~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 7 AKTVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34699999999999999999999874
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=97.92 E-value=2.4e-06 Score=68.06 Aligned_cols=85 Identities=19% Similarity=0.186 Sum_probs=49.1
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCC----CCCcccHH----HHHHH
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQV----PEPSLQHK----VMIEA 99 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~----~~~~~~~~----~~~~~ 99 (241)
+++++||||+||||++-.||..+... +.+|..+.......+. ..|...++..+.+ ...+.... .....
T Consensus 13 vi~lvGptGvGKTTTiAKLAa~~~~~-~~kV~lit~Dt~R~gA---~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~~~~ 88 (213)
T d1vmaa2 13 VIMVVGVNGTGKTTSCGKLAKMFVDE-GKSVVLAAADTFRAAA---IEQLKIWGERVGATVISHSEGADPAAVAFDAVAH 88 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEECTTCHHH---HHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCceEEEeecccccch---hHHHHHHhhhcCccccccCCCCcHHHHHHHHHHH
Confidence 78999999999999999999887544 6777776522111000 0111111222222 11122222 22334
Q ss_pred HHhcCCcEEEEcCCCCH
Q 026207 100 VENHMPEVIIVDEIGTE 116 (241)
Q Consensus 100 ~l~~~p~vlilDE~~~~ 116 (241)
....+.|++++|-++..
T Consensus 89 ~~~~~~d~ilIDTaGr~ 105 (213)
T d1vmaa2 89 ALARNKDVVIIDTAGRL 105 (213)
T ss_dssp HHHTTCSEEEEEECCCC
T ss_pred HHHcCCCEEEEeccccc
Confidence 44568899999999744
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=97.90 E-value=1e-05 Score=63.29 Aligned_cols=121 Identities=18% Similarity=0.252 Sum_probs=65.7
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhcccc------CCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHH
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDE------FQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEA 99 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~------~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (241)
+..++|+||||+|||+++..++..+... .+.+++.++ ...+.... ...|. ...+.+.++..
T Consensus 43 k~n~lLvG~pGVGKTalv~~LA~ri~~~~vp~~L~~~~i~~ld-~~~LiAg~----~~rG~--------~E~rl~~il~e 109 (195)
T d1jbka_ 43 KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD-MGALVAGA----KYRGE--------FEERLKGVLND 109 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEEC-HHHHHTTT----CSHHH--------HHHHHHHHHHH
T ss_pred CCCeEEEecCCcccHHHHHHHHHHHHhCCCCHHHcCceEEEee-HHHHhccC----CccHH--------HHHHHHHHHHH
Confidence 3468999999999999999999877533 235556555 22221000 00000 01233445555
Q ss_pred HHhcC-CcEEEEcCCCCHHhH----------HHHHHHHhCC-cEEEEeecCCChhhhhc-CCccccccccccEEEe
Q 026207 100 VENHM-PEVIIVDEIGTEAEA----------HACRSIAERG-VMLIGTAHGEWLENIIK-NPILSDLIGGVDTVTL 162 (241)
Q Consensus 100 ~l~~~-p~vlilDE~~~~~d~----------~~~~~~~~~g-~~vi~t~H~~~~~~~~~-~p~l~~l~~~~d~V~~ 162 (241)
+..++ .-++++||+...... ..+.-+..+| ..+|+++........+. +|.+... ++.|.+
T Consensus 110 ~~~~~~~iILfIDeih~l~~~g~~~g~~d~~~~Lkp~L~rg~l~~IgatT~eey~~~~e~d~aL~rr---F~~I~V 182 (195)
T d1jbka_ 110 LAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERR---FQKVFV 182 (195)
T ss_dssp HHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHTTSCCEEEEECHHHHHHHTTTCHHHHTT---EEEEEC
T ss_pred HhcCCCcEEEEcchHHHHhcCCCCCCcccHHHHHHHHHhCCCceEEecCCHHHHHHHHHcCHHHHhc---CCEeec
Confidence 54454 348899998655433 2223333344 55777665554333332 2345555 566655
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=97.87 E-value=3.8e-06 Score=62.10 Aligned_cols=24 Identities=33% Similarity=0.373 Sum_probs=20.8
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
.+++|+|||||||||+++.|+...
T Consensus 3 klIii~G~pGsGKTTla~~L~~~~ 26 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAKN 26 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 478899999999999999887654
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=97.87 E-value=2.5e-05 Score=67.41 Aligned_cols=137 Identities=22% Similarity=0.284 Sum_probs=70.1
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcccc------CCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHH
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDE------FQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVE 101 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~------~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 101 (241)
.++|+||||+|||+++..++..+... .+.+++.++ ...+.... ...| ....+...++..+.
T Consensus 45 n~llvG~~GvGKtaiv~~la~~i~~~~vp~~l~~~~i~~ld-~~~l~ag~----~~~g--------~~e~r~~~i~~~~~ 111 (387)
T d1qvra2 45 NPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQ-MGSLLAGA----KYRG--------EFEERLKAVIQEVV 111 (387)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEEC-C-----------------------CHHHHHHHHHHHHH
T ss_pred CCeEECCCCCCHHHHHHHHHHHHHhCCCCHHHcCceEEEee-Hhhhhccc----Ccch--------hHHHHHHHHHHHhc
Confidence 57889999999999999888766433 235666666 33221100 0000 00123334555554
Q ss_pred hcC-CcEEEEcCCCCHHhH----------HHHHHHHhCC-cEEEEeecCCChhhhhcCCccccccccccEEEeCChH-HH
Q 026207 102 NHM-PEVIIVDEIGTEAEA----------HACRSIAERG-VMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEE-AR 168 (241)
Q Consensus 102 ~~~-p~vlilDE~~~~~d~----------~~~~~~~~~g-~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~~~~~-~~ 168 (241)
..+ +-++++||+...... ..+.-+..+| ..+|+++........-..|.+.+. ++.|.+.+.. ..
T Consensus 112 ~~~~~~ilfide~h~l~~~g~~~g~~d~a~~Lkp~L~rg~~~~I~~tT~~ey~~~e~d~al~rr---F~~v~v~ep~~~~ 188 (387)
T d1qvra2 112 QSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTLDEYREIEKDPALERR---FQPVYVDEPTVEE 188 (387)
T ss_dssp TTCSSEEEEECCC-------------------HHHHHTTCCCEEEEECHHHHHHHTTCTTTCSC---CCCEEECCCCHHH
T ss_pred cCCCceEEEeccHHHHhcCCCCCCcccHHHHHHHHHhCCCcceeeecCHHHHHHhcccHHHHHh---cccccCCCCcHHH
Confidence 454 457899998665432 1222233344 567776665544443334566666 7888882221 11
Q ss_pred HHHHHHhhhccC
Q 026207 169 ARRCQKSILERK 180 (241)
Q Consensus 169 ~~~~~~~~k~r~ 180 (241)
..++++.++.++
T Consensus 189 ~~~il~~~~~~~ 200 (387)
T d1qvra2 189 TISILRGLKEKY 200 (387)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 126666666543
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=97.87 E-value=3.8e-06 Score=63.21 Aligned_cols=26 Identities=19% Similarity=0.270 Sum_probs=23.7
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhcc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
..+|+|+|+|||||||+.+.|+..+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35799999999999999999999985
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=97.84 E-value=4.3e-06 Score=63.00 Aligned_cols=27 Identities=33% Similarity=0.282 Sum_probs=23.5
Q ss_pred ecc-EEEEEeCCCchHHHHHHHHHHhcc
Q 026207 25 IFD-FFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 25 ~~g-~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
|++ .++|+|||||||||+.+.|+..+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHhC
Confidence 444 589999999999999999999875
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=97.84 E-value=3.4e-06 Score=63.38 Aligned_cols=26 Identities=38% Similarity=0.416 Sum_probs=22.6
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhcc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
.+.++|+|||||||||+.+.|+..+.
T Consensus 4 ~~~I~i~G~pGsGKTTia~~La~~l~ 29 (173)
T d1rkba_ 4 LPNILLTGTPGVGKTTLGKELASKSG 29 (173)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHC
Confidence 35688999999999999999998763
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.84 E-value=6e-06 Score=62.23 Aligned_cols=31 Identities=26% Similarity=0.335 Sum_probs=25.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
+++|.|||||||||+.+.++..+. .++++++
T Consensus 6 iI~l~G~~GsGKSTia~~La~~lg----~~~~~~~ 36 (176)
T d1zp6a1 6 ILLLSGHPGSGKSTIAEALANLPG----VPKVHFH 36 (176)
T ss_dssp EEEEEECTTSCHHHHHHHHHTCSS----SCEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC----CCEEEec
Confidence 789999999999999999988653 4556665
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=97.84 E-value=4.1e-06 Score=61.99 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=21.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
.|.|+|||||||||+.+.|+..+.
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 477889999999999999999874
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.84 E-value=4.9e-06 Score=62.71 Aligned_cols=26 Identities=15% Similarity=0.161 Sum_probs=23.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDE 53 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~ 53 (241)
+|+|+|+|||||||+.+.|+..+...
T Consensus 8 ~I~l~G~~GsGKTTia~~La~~L~~~ 33 (183)
T d1m8pa3 8 TIFLTGYMNSGKDAIARALQVTLNQQ 33 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 67899999999999999999988654
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=97.82 E-value=5.1e-06 Score=63.00 Aligned_cols=34 Identities=26% Similarity=0.223 Sum_probs=27.2
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEE
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIV 61 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i 61 (241)
.+|+|.|+|||||||+++.|+..+... +.++..+
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~~-~~~~~~~ 35 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRKE-GVNYKMV 35 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTT-TCCCEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHc-CCCeEEE
Confidence 589999999999999999999988654 3444444
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=97.82 E-value=1.1e-05 Score=67.87 Aligned_cols=84 Identities=23% Similarity=0.301 Sum_probs=49.7
Q ss_pred cceeeccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCC--cccH-HHHH
Q 026207 21 INKIIFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEP--SLQH-KVMI 97 (241)
Q Consensus 21 ~~~~~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~ 97 (241)
....+.+.++++||||+|||.|++.|+..+. .+.+.++ -.++...+... . -++...+ +... ....
T Consensus 47 ~~~~p~~~~lf~Gp~GvGKT~lak~la~~l~----~~~i~~d-~s~~~~~~~~~-~------l~g~~~gy~g~~~~~~l~ 114 (315)
T d1r6bx3 47 HEHKPVGSFLFAGPTGVGKTEVTVQLSKALG----IELLRFD-MSEYMERHTVS-R------LIGAPPGYVGFDQGGLLT 114 (315)
T ss_dssp CTTSCSEEEEEECSTTSSHHHHHHHHHHHHT----CEEEEEE-GGGCSSSSCCS-S------SCCCCSCSHHHHHTTHHH
T ss_pred CCCCCceEEEEECCCcchhHHHHHHHHhhcc----CCeeEec-cccccchhhhh-h------hcccCCCccccccCChhh
Confidence 3456677899999999999999999999874 4667776 44443221110 0 0111111 1111 1122
Q ss_pred HHHHhcCCcEEEEcCCCCH
Q 026207 98 EAVENHMPEVIIVDEIGTE 116 (241)
Q Consensus 98 ~~~l~~~p~vlilDE~~~~ 116 (241)
.........++++||+-..
T Consensus 115 ~~~~~~~~~vvl~DeieKa 133 (315)
T d1r6bx3 115 DAVIKHPHAVLLLDEIEKA 133 (315)
T ss_dssp HHHHHCSSEEEEEETGGGS
T ss_pred HHHHhCccchhhhcccccc
Confidence 3333455589999998644
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=97.80 E-value=4.8e-06 Score=62.64 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=23.1
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhcc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
..+++|+|||||||||+.+.|+..+.
T Consensus 6 ~~iivl~G~~GsGKsT~a~~La~~l~ 31 (171)
T d1knqa_ 6 HHIYVLMGVSGSGKSAVASEVAHQLH 31 (171)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34789999999999999999999874
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=97.79 E-value=1.1e-05 Score=67.89 Aligned_cols=45 Identities=27% Similarity=0.315 Sum_probs=34.1
Q ss_pred cceeeccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCccc
Q 026207 21 INKIIFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEI 67 (241)
Q Consensus 21 ~~~~~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~ 67 (241)
....+.++++++||+|+|||.+++.++..+... +.+++.++ ..++
T Consensus 48 ~~~kp~~~~lf~Gp~G~GKt~lak~la~~l~~~-~~~~~~~~-~~~~ 92 (315)
T d1qvra3 48 DPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT-EEAMIRID-MTEY 92 (315)
T ss_dssp CSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSS-GGGEEEEC-TTTC
T ss_pred CCCCCceEEEEECCCcchHHHHHHHHHHHhcCC-CcceEEEe-cccc
Confidence 345666789999999999999999999987422 34677776 4444
|
| >d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Clostridium acetobutylicum [TaxId: 1488]
Probab=97.79 E-value=9.3e-06 Score=60.37 Aligned_cols=124 Identities=14% Similarity=0.126 Sum_probs=66.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccC-CCC-CCccccccchhhcCCCCCcccHHHHHHHHHhcCC
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIG-GDG-DIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMP 105 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p 105 (241)
+-+|+||..|||||-|...+...... |.+++.+....+.. ... ...+..... .-..+. ....... ....++
T Consensus 9 l~lI~GpMfSGKTteLi~~~~~~~~~-g~~vl~i~~~~D~Ry~~~~i~sh~g~~~-~a~~~~----~~~~~~~-~~~~~~ 81 (141)
T d1xx6a1 9 VEVIVGPMYSGKSEELIRRIRRAKIA-KQKIQVFKPEIDNRYSKEDVVSHMGEKE-QAVAIK----NSREILK-YFEEDT 81 (141)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEEEC-------CEEECTTSCEE-ECEEES----SSTHHHH-HCCTTC
T ss_pred EEEEEeccccHHHHHHHHHHHHhhhc-CCcEEEEEeccccccccceeeecccceE-EEEEec----chhhhhh-hhcccc
Confidence 68899999999999998888776544 67887776332221 111 111110000 000011 1111222 234679
Q ss_pred cEEEEcCCCCHHhH--HHHHHHHhCCcEEEEeecCCChhhhhcCC--ccccccccccEEE
Q 026207 106 EVIIVDEIGTEAEA--HACRSIAERGVMLIGTAHGEWLENIIKNP--ILSDLIGGVDTVT 161 (241)
Q Consensus 106 ~vlilDE~~~~~d~--~~~~~~~~~g~~vi~t~H~~~~~~~~~~p--~l~~l~~~~d~V~ 161 (241)
++|++||.|=..+. ..+....+.|+.|+...=..+ .-.+| .+.+|+.-||.|.
T Consensus 82 dvI~IDE~QFf~d~~~~~~~~l~~~g~~Viv~GLd~D---f~~~~F~~~~~Ll~~Ad~v~ 138 (141)
T d1xx6a1 82 EVIAIDEVQFFDDEIVEIVNKIAESGRRVICAGLDMD---FRGKPFGPIPELMAIAEFVD 138 (141)
T ss_dssp SEEEECSGGGSCTHHHHHHHHHHHTTCEEEEEECSBC---TTSCBCTTHHHHHHHCSEEE
T ss_pred cEEEEeehhhccccHHHHHHhheeCCcEEEEEEeccc---cccCccchHHHHHhhcCeeE
Confidence 99999999755443 345566677999877433333 22233 4444444477664
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.77 E-value=5.3e-06 Score=67.07 Aligned_cols=31 Identities=32% Similarity=0.460 Sum_probs=25.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
.++|.|||||||||+++++++.+.. .++.++
T Consensus 34 ~ilL~GpPGtGKT~la~~la~~~~~----~~~~i~ 64 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLRSAIFEETQG----NVIVID 64 (273)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTTT----CCEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhc----ceEEEe
Confidence 4889999999999999999998853 335565
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=97.75 E-value=1.1e-05 Score=64.65 Aligned_cols=37 Identities=27% Similarity=0.432 Sum_probs=30.9
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
.+.++|+||||+||||+++.++..+....+.+++++.
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~ 79 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN 79 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHhcccCCcEEEec
Confidence 3579999999999999999999998766556666665
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=97.71 E-value=1.2e-05 Score=63.95 Aligned_cols=33 Identities=33% Similarity=0.423 Sum_probs=26.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
+++|+||+|||||||++.++..... ++++..+.
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~~--~~~~~ivn 34 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLED--NYKVAYVN 34 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTT--TSCEEEEE
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHhh--CCeEEEEe
Confidence 6899999999999999999987653 35666663
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.69 E-value=1.3e-05 Score=61.40 Aligned_cols=34 Identities=18% Similarity=0.191 Sum_probs=27.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
+|+|.||+||||||+++.|+..+... +..+..++
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~~~-~~~~~~~~ 57 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLREQ-GISVCVFH 57 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccc-cccceecc
Confidence 68899999999999999999888654 44455444
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=97.68 E-value=1.4e-05 Score=60.76 Aligned_cols=34 Identities=26% Similarity=0.427 Sum_probs=28.1
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
+++|.|+|||||||+++.|+..+... +..+..+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~~~-~~~~~~~~ 36 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILDNQ-GINNKIIN 36 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTT-TCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc-CCCEEEEE
Confidence 68899999999999999999998654 56665554
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.65 E-value=7.2e-06 Score=62.91 Aligned_cols=28 Identities=25% Similarity=0.088 Sum_probs=23.9
Q ss_pred cc-EEEEEeCCCchHHHHHHHHHHhcccc
Q 026207 26 FD-FFLSYFRPGVGKTTVMREIARVLSDE 53 (241)
Q Consensus 26 ~g-~vll~Gp~GsGKTTLl~~l~~~l~~~ 53 (241)
+| +|+|+|+|||||||+.+.|+..+...
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~~~ 46 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLVCH 46 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 44 67799999999999999999988644
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.64 E-value=1.3e-05 Score=62.01 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=22.6
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
.++++|+|||||||||+.+.|+..+
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999876
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=97.63 E-value=1.3e-05 Score=62.01 Aligned_cols=23 Identities=30% Similarity=0.366 Sum_probs=21.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
+|+|.|||||||||+.+.|+..+
T Consensus 8 iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 8 VVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 78999999999999999999875
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.63 E-value=1.3e-05 Score=64.24 Aligned_cols=33 Identities=30% Similarity=0.443 Sum_probs=27.6
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
.+.++|+||||+||||++++++..+. ..+..+.
T Consensus 52 ~~~lll~GPpG~GKTt~a~~la~~~~----~~~~~~~ 84 (253)
T d1sxja2 52 FRAAMLYGPPGIGKTTAAHLVAQELG----YDILEQN 84 (253)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTT----CEEEEEC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH----hhhhccc
Confidence 34799999999999999999999874 4566666
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=97.58 E-value=1.7e-05 Score=62.10 Aligned_cols=26 Identities=23% Similarity=0.227 Sum_probs=23.7
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhcc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
.++|+|.|||||||||+.+.|+..+.
T Consensus 3 ~piI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 3 APVITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46999999999999999999999874
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.57 E-value=1.5e-05 Score=60.59 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=20.5
Q ss_pred EEEEeCCCchHHHHHHHHHHhc
Q 026207 29 FLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~l 50 (241)
++|.|||||||||+.+.|+..+
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999876
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.56 E-value=2.4e-05 Score=60.62 Aligned_cols=34 Identities=18% Similarity=0.156 Sum_probs=27.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
+++++|.|||||||+.+.|+..+... +.++..++
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l~~~-~~~~~~~~ 37 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFN 37 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhc-CCCCeEEc
Confidence 68999999999999999999887644 45555554
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.55 E-value=2.2e-05 Score=60.75 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=21.8
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
.+++|.|||||||||+.+.|+..+
T Consensus 9 ~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 9 KIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999865
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.53 E-value=1.7e-05 Score=62.92 Aligned_cols=25 Identities=44% Similarity=0.440 Sum_probs=22.4
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
+.++|+||||+||||+++.++..+.
T Consensus 46 ~~lll~Gp~G~GKTtla~~iak~l~ 70 (231)
T d1iqpa2 46 PHLLFAGPPGVGKTTAALALARELF 70 (231)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHH
Confidence 3589999999999999999998764
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=97.52 E-value=2e-05 Score=60.65 Aligned_cols=24 Identities=21% Similarity=0.079 Sum_probs=21.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
.++|.|||||||||+.+.|+..+.
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~~ 28 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKYQ 28 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 378999999999999999988763
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.51 E-value=2.3e-05 Score=60.42 Aligned_cols=23 Identities=26% Similarity=0.301 Sum_probs=21.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
+|+|.|||||||||..+.|+..+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999876
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=97.50 E-value=2.2e-05 Score=59.08 Aligned_cols=23 Identities=30% Similarity=0.337 Sum_probs=20.7
Q ss_pred EEEEeCCCchHHHHHHHHHHhcc
Q 026207 29 FLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
++|+|+|||||||+.+.|+..+.
T Consensus 3 I~liG~~GsGKsTi~k~La~~l~ 25 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDLD 25 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 66779999999999999999873
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.50 E-value=2.3e-05 Score=59.91 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=19.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHh
Q 026207 28 FFLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~ 49 (241)
+++++|+|||||||+++.++..
T Consensus 16 liil~G~pGsGKST~a~~l~~~ 37 (172)
T d1yj5a2 16 VVVAVGFPGAGKSTFIQEHLVS 37 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHTGG
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 8999999999999999988654
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=97.50 E-value=2.2e-05 Score=60.04 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=20.9
Q ss_pred EEEEeCCCchHHHHHHHHHHhcc
Q 026207 29 FLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
|+|.|||||||||+.+.|+..+.
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~g 25 (182)
T d1s3ga1 3 IVLMGLPGAGKGTQADRIVEKYG 25 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
Confidence 67899999999999999998863
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=97.49 E-value=3.4e-06 Score=64.54 Aligned_cols=43 Identities=16% Similarity=0.077 Sum_probs=30.2
Q ss_pred eEEEEEeEEeeC-cceeeccEEEEEeCCCchHHHHHHHHHHhcc
Q 026207 9 LLIVKFFYALYS-INKIIFDFFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 9 ~~~~r~~~~~~~-~~~~~~g~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
++.+..+....+ ..+...++++|+|||||||||++.+|.-.+.
T Consensus 6 ~l~l~Nf~~~~~~~i~f~~~~tvi~G~NGsGKStil~Ai~~~L~ 49 (222)
T d1qhla_ 6 SLTLINWNGFFARTFDLDELVTTLSGGNGAGKSTTMAAFVTALI 49 (222)
T ss_dssp EEEEEEETTEEEEEECHHHHHHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEEEECccCEeeEEEEcCCCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 344555544322 1334456999999999999999999987654
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.48 E-value=2.3e-05 Score=59.10 Aligned_cols=24 Identities=33% Similarity=0.414 Sum_probs=21.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
-++|+|+|||||||+.+.++..+.
T Consensus 3 ~IvliG~~G~GKSTig~~La~~l~ 26 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLAKALG 26 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred cEEEECCCCCCHHHHHHHHHHHhC
Confidence 366779999999999999998874
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=97.46 E-value=2.7e-05 Score=58.97 Aligned_cols=23 Identities=43% Similarity=0.482 Sum_probs=20.3
Q ss_pred EEEEeCCCchHHHHHHHHHHhcc
Q 026207 29 FLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
+.|+|+|||||||+.+.++..+.
T Consensus 5 Iil~G~~GsGKSTia~~LA~~Lg 27 (170)
T d1e6ca_ 5 IFMVGARGCGMTTVGRELARALG 27 (170)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 45779999999999999998874
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.45 E-value=2.7e-05 Score=59.39 Aligned_cols=22 Identities=36% Similarity=0.400 Sum_probs=20.5
Q ss_pred EEEEeCCCchHHHHHHHHHHhc
Q 026207 29 FLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~l 50 (241)
++|.|||||||||+.+.|+..+
T Consensus 3 I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6889999999999999999886
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.45 E-value=3.5e-05 Score=58.96 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=22.5
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
.+++|+||+||||||+++.|....+
T Consensus 3 ~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 3 RVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3789999999999999999998775
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.44 E-value=3e-05 Score=59.02 Aligned_cols=22 Identities=23% Similarity=0.137 Sum_probs=20.2
Q ss_pred EEEEeCCCchHHHHHHHHHHhc
Q 026207 29 FLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~l 50 (241)
++|.|||||||||..+.|+..+
T Consensus 3 I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 3 IILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999876
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=97.44 E-value=3.4e-05 Score=59.72 Aligned_cols=23 Identities=30% Similarity=0.283 Sum_probs=20.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++|+|||||||||+.+.|+..+
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHB
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 36788999999999999999876
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.42 E-value=3.3e-05 Score=59.04 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=20.0
Q ss_pred EEEEeCCCchHHHHHHHHHHhc
Q 026207 29 FLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~l 50 (241)
++|.|||||||||+.+.|+..+
T Consensus 5 Ivl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 5 MVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6688999999999999999876
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=97.41 E-value=3.3e-05 Score=59.38 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=19.7
Q ss_pred EEEEeCCCchHHHHHHHHHHhc
Q 026207 29 FLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~l 50 (241)
++|.|||||||||+.+.|+..+
T Consensus 6 iil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 6 AVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5578999999999999999876
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.40 E-value=3.9e-05 Score=63.10 Aligned_cols=43 Identities=21% Similarity=0.095 Sum_probs=30.0
Q ss_pred eeEEEEEeEEeeCccee--eccEEEEEeCCCchHHHHHHHHHHhc
Q 026207 8 FLLIVKFFYALYSINKI--IFDFFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 8 ~~~~~r~~~~~~~~~~~--~~g~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
.++.++.++..-....+ ..++.+|+|||||||||++.+|.-.+
T Consensus 4 ~~i~I~NFksf~~~~~i~f~~~lnvlvG~NgsGKS~iL~Ai~~~l 48 (308)
T d1e69a_ 4 KKLYLKGFKSFGRPSLIGFSDRVTAIVGPNGSGKSNIIDAIKWVF 48 (308)
T ss_dssp EEEEEESBTTBCSCEEEECCSSEEEEECCTTTCSTHHHHHHHHTS
T ss_pred EEEEEECeEEECCCEEEeCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 34457777653232222 24599999999999999999996644
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.40 E-value=3.2e-05 Score=61.22 Aligned_cols=24 Identities=33% Similarity=0.542 Sum_probs=21.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
.++|+||||+||||+++.++..+.
T Consensus 35 ~lll~Gp~G~GKTtl~~~i~~~l~ 58 (237)
T d1sxjd2 35 HMLFYGPPGTGKTSTILALTKELY 58 (237)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCChHHHHHHHHHHHc
Confidence 489999999999999999999863
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.39 E-value=3.4e-05 Score=60.95 Aligned_cols=25 Identities=32% Similarity=0.400 Sum_probs=22.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSD 52 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~ 52 (241)
.++|+||||+||||+++.++..+..
T Consensus 38 ~~ll~Gp~G~GKTt~a~~la~~l~~ 62 (224)
T d1sxjb2 38 HMIISGMPGIGKTTSVHCLAHELLG 62 (224)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHG
T ss_pred eEEEECCCCCCchhhHHHHHHHHhc
Confidence 4899999999999999999987753
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.35 E-value=5.6e-05 Score=59.11 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=22.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSD 52 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~ 52 (241)
+|.|+||+||||||+.+.|+..+..
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~ 28 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQ 28 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhch
Confidence 5789999999999999999998754
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=97.34 E-value=0.00013 Score=62.34 Aligned_cols=40 Identities=23% Similarity=0.287 Sum_probs=30.8
Q ss_pred eeeccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCccc
Q 026207 23 KIIFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEI 67 (241)
Q Consensus 23 ~~~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~ 67 (241)
.++.+.+|++||+|+|||-+.+.||..+. ...+.++ ..++
T Consensus 65 ~~p~~niLfiGPTGvGKTElAk~LA~~~~----~~~ir~D-~s~~ 104 (364)
T d1um8a_ 65 ELSKSNILLIGPTGSGKTLMAQTLAKHLD----IPIAISD-ATSL 104 (364)
T ss_dssp TCCCCCEEEECCTTSSHHHHHHHHHHHTT----CCEEEEE-GGGC
T ss_pred cCCCcceeeeCCCCccHHHHHHHHHhhcc----cceeehh-hhhc
Confidence 45667899999999999999999998863 3456565 4444
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.31 E-value=4.6e-05 Score=60.08 Aligned_cols=24 Identities=38% Similarity=0.587 Sum_probs=21.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
.++|+||||+||||+++.++..+.
T Consensus 37 ~lLl~Gp~G~GKttl~~~la~~l~ 60 (227)
T d1sxjc2 37 HLLFYGPPGTGKTSTIVALAREIY 60 (227)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHHHHhh
Confidence 488999999999999999999764
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.31 E-value=3.9e-05 Score=61.28 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=21.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
.++|+||||+||||++++++..+
T Consensus 35 ~lll~Gp~G~GKTt~~~~la~~l 57 (252)
T d1sxje2 35 HLLLYGPNGTGKKTRCMALLESI 57 (252)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHhh
Confidence 48999999999999999999876
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.31 E-value=5.9e-05 Score=59.37 Aligned_cols=39 Identities=18% Similarity=0.158 Sum_probs=30.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEI 67 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~ 67 (241)
++.|+|.|||||||+.+.|...+....+..++.++ +.++
T Consensus 26 vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ld-gD~i 64 (208)
T d1m7ga_ 26 TIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD-GDNI 64 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC-HHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEc-chHH
Confidence 79999999999999999999877544345667776 5544
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.31 E-value=6e-05 Score=57.99 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=22.2
Q ss_pred EEEEeCCCchHHHHHHHHHHhcccc
Q 026207 29 FLSYFRPGVGKTTVMREIARVLSDE 53 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~l~~~ 53 (241)
|+|+||+|||||||++.|+...+..
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~~~ 28 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYPDS 28 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTT
T ss_pred EEEECCCCCCHHHHHHHHHHhCCcc
Confidence 6899999999999999999987643
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=97.29 E-value=5.7e-05 Score=59.16 Aligned_cols=24 Identities=25% Similarity=0.159 Sum_probs=21.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
+|.|.|||||||||+.+.|+..+.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 467889999999999999999874
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=97.26 E-value=3.5e-05 Score=62.07 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=21.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
+++|+||||+||||+++.++..+.
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l~ 71 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRVS 71 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHHH
Confidence 567789999999999999999875
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=97.26 E-value=6.8e-05 Score=57.71 Aligned_cols=22 Identities=18% Similarity=0.176 Sum_probs=20.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHh
Q 026207 28 FFLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~ 49 (241)
.|+|+|+||+|||||++.|.+.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHhcCC
Confidence 5999999999999999999974
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.24 E-value=0.00011 Score=56.88 Aligned_cols=36 Identities=14% Similarity=0.204 Sum_probs=30.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCC
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTS 64 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~ 64 (241)
+|.|.|+.||||||+++.|...+... |..|.++..+
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~~~-g~~v~~~~~P 37 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFRAA-GRSVATLAFP 37 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEESS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCCEEEEecC
Confidence 58899999999999999999988655 6778777644
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.24 E-value=9.8e-05 Score=58.64 Aligned_cols=34 Identities=24% Similarity=0.303 Sum_probs=28.0
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
-++++|+|.-|||||||++.++... . +.++..|.
T Consensus 3 iPv~iitGFLGaGKTTll~~lL~~~--~-~~riaVI~ 36 (222)
T d1nija1 3 IAVTLLTGFLGAGKTTLLRHILNEQ--H-GYKIAVIE 36 (222)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC--C-CCCEEEEC
T ss_pred CCEEEEeeCCCCCHHHHHHHHHhcC--C-CCcEEEEE
Confidence 4689999999999999999998863 2 46777775
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.21 E-value=9.1e-05 Score=57.20 Aligned_cols=24 Identities=13% Similarity=0.037 Sum_probs=21.9
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHh
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~ 49 (241)
.+.|+|+|+||+|||||++.+.+.
T Consensus 3 ~p~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 3 QPSIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999999875
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=97.18 E-value=9.2e-05 Score=54.36 Aligned_cols=22 Identities=23% Similarity=0.141 Sum_probs=19.5
Q ss_pred EEEEeCCCchHHHHHHHHHHhc
Q 026207 29 FLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~l 50 (241)
++|+|+||+|||||++.+++.-
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~~ 24 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLGE 24 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 6899999999999999998643
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.15 E-value=9.6e-05 Score=57.06 Aligned_cols=23 Identities=22% Similarity=0.314 Sum_probs=21.0
Q ss_pred EEEEeCCCchHHHHHHHHHHhcc
Q 026207 29 FLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
|+|+||+||||||+++.|+...+
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 67999999999999999998865
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.10 E-value=0.00018 Score=56.43 Aligned_cols=36 Identities=17% Similarity=0.189 Sum_probs=30.1
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCC
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTS 64 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~ 64 (241)
+|.|.|+.||||||+++.|...+... |.++.++..+
T Consensus 5 lI~ieG~dGsGKsT~~~~L~~~L~~~-g~~v~~~~~p 40 (209)
T d1nn5a_ 5 LIVLEGVDRAGKSTQSRKLVEALCAA-GHRAELLRFP 40 (209)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEEESS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCcEEEEeCC
Confidence 68889999999999999999988765 6777777533
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.07 E-value=0.00013 Score=54.93 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=21.7
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHh
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~ 49 (241)
.|+|+|.|.||+|||||+++|.+.
T Consensus 5 ~~~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 5 CGFIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCC
Confidence 367999999999999999999874
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.06 E-value=0.00098 Score=54.28 Aligned_cols=111 Identities=12% Similarity=0.027 Sum_probs=55.9
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccc---cCCCeEEEEcCCcccCCCCCCccccccchhhc------CCCCCcc-----
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSD---EFQKRVVIVDTSNEIGGDGDIPHSAIGTARRM------QVPEPSL----- 91 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~---~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~------~~~~~~~----- 91 (241)
..+++|.|+.|+|||||++.+...... .....++.+........... .........+. ...+...
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~~~~~~~~~~f~~~~Wv~vs~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTF-DLFTDILLMLKSEDDLLNFPSVEHVTSVV 122 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHH-HHHHHHHHHHTTTSCCTTCCCCTTCCHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhhhhhhhhcCceEEEEEecCCCCHHHH-HHHHHHHHHHhcchhhcCCccchhhhhHH
Confidence 348999999999999999998765321 11123445542222211000 00000000000 0011111
Q ss_pred cHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHHHHHhCCcEEEEeecCCC
Q 026207 92 QHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEW 140 (241)
Q Consensus 92 ~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~~~~~~g~~vi~t~H~~~ 140 (241)
.....+...+..+.-++|+|.+-...... .....|..+|+|+-..+
T Consensus 123 ~~~~~~~~~L~~kr~LlVLDDv~~~~~~~---~~~~~~srilvTTR~~~ 168 (277)
T d2a5yb3 123 LKRMICNALIDRPNTLFVFDDVVQEETIR---WAQELRLRCLVTTRDVE 168 (277)
T ss_dssp HHHHHHHHHTTSTTEEEEEEEECCHHHHH---HHHHTTCEEEEEESBGG
T ss_pred HHHHHHHHHhccCCeeEecchhhHHhhhh---hhcccCceEEEEeehHH
Confidence 11223444555677899999987654333 33345667777666544
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.06 E-value=0.00016 Score=52.89 Aligned_cols=22 Identities=23% Similarity=0.155 Sum_probs=20.1
Q ss_pred EEEEEeCCCchHHHHHHHHHHh
Q 026207 28 FFLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~ 49 (241)
=++|+|+||+|||||++.+.+.
T Consensus 2 KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999875
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.03 E-value=0.00022 Score=60.62 Aligned_cols=41 Identities=20% Similarity=0.118 Sum_probs=28.3
Q ss_pred eeEEEEEeEEeeCc--ceee-ccEEEEEeCCCchHHHHHHHHHH
Q 026207 8 FLLIVKFFYALYSI--NKII-FDFFLSYFRPGVGKTTVMREIAR 48 (241)
Q Consensus 8 ~~~~~r~~~~~~~~--~~~~-~g~vll~Gp~GsGKTTLl~~l~~ 48 (241)
.++.+..++...+. ++.. .++.+|+|||||||||++.+|.-
T Consensus 4 ~~l~l~NFks~~~~~~i~f~~~~l~~i~G~NGsGKS~ileAi~~ 47 (427)
T d1w1wa_ 4 VGLELSNFKSYRGVTKVGFGESNFTSIIGPNGSGKSNMMDAISF 47 (427)
T ss_dssp EEEEEESCSSCCSEEEEECTTCSEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEeCeeeeCCCEEEeCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 34456666432222 2333 56999999999999999999964
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=97.03 E-value=9e-05 Score=62.10 Aligned_cols=26 Identities=31% Similarity=0.475 Sum_probs=23.5
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSD 52 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~ 52 (241)
+-+||.||||+||||+++.++..+++
T Consensus 29 h~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 29 GGVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred CeEEEECCCCccHHHHHHHHHHhCCC
Confidence 35899999999999999999999863
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=97.02 E-value=0.00015 Score=53.61 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=19.6
Q ss_pred EEEEeCCCchHHHHHHHHHHh
Q 026207 29 FLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~ 49 (241)
|+++|+|++|||||++++++.
T Consensus 4 I~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 4 VVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999975
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=97.01 E-value=0.00017 Score=53.25 Aligned_cols=22 Identities=27% Similarity=0.238 Sum_probs=20.0
Q ss_pred EEEEeCCCchHHHHHHHHHHhc
Q 026207 29 FLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~l 50 (241)
++|+|+||||||||++.+.+.-
T Consensus 8 I~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999998753
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.01 E-value=0.00013 Score=55.11 Aligned_cols=22 Identities=23% Similarity=0.270 Sum_probs=20.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHh
Q 026207 28 FFLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~ 49 (241)
-|+|+|+||+|||||++.|.+.
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999999874
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.01 E-value=0.0002 Score=56.13 Aligned_cols=24 Identities=13% Similarity=0.454 Sum_probs=22.1
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
+++|+||+|+|||||++.|+...+
T Consensus 4 livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 4 LYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 789999999999999999998865
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=97.01 E-value=0.00014 Score=54.55 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=19.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHh
Q 026207 28 FFLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~ 49 (241)
-|+|+|++|+|||||+++|++.
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~ 23 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKK 23 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999999874
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.01 E-value=0.00022 Score=54.55 Aligned_cols=27 Identities=15% Similarity=0.218 Sum_probs=23.0
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcccc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDE 53 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~ 53 (241)
..++|+||+|+|||||++.|+...+..
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~~~~ 30 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKHPDR 30 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCTTT
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCCcC
Confidence 468899999999999999999876543
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=97.01 E-value=0.00016 Score=52.34 Aligned_cols=37 Identities=19% Similarity=0.172 Sum_probs=26.3
Q ss_pred eccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCc
Q 026207 25 IFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN 65 (241)
Q Consensus 25 ~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~ 65 (241)
.+...+|.+|+|+|||+++-.++.. .+.+++++....
T Consensus 7 ~~~~~ll~apTGsGKT~~~~~~~~~----~~~~vli~~P~~ 43 (136)
T d1a1va1 7 SFQVAHLHAPTGSGKSTKVPAAYAA----QGYKVLVLNPSV 43 (136)
T ss_dssp SCEEEEEECCTTSCTTTHHHHHHHT----TTCCEEEEESCH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHH----cCCcEEEEcChH
Confidence 3457899999999999987554432 246788777443
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=96.97 E-value=0.00018 Score=54.38 Aligned_cols=24 Identities=29% Similarity=0.456 Sum_probs=21.8
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHh
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~ 49 (241)
.|.|+|+|.+|+|||||++.+++.
T Consensus 5 ~~~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 5 SGFVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999875
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=96.93 E-value=0.00012 Score=54.97 Aligned_cols=23 Identities=17% Similarity=0.076 Sum_probs=19.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
=++|+|++|+|||||++.+.+.-
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999987643
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=96.92 E-value=0.00013 Score=60.14 Aligned_cols=36 Identities=17% Similarity=0.270 Sum_probs=27.0
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
.++|.|+|++||||||+.+.+...+... +.++..++
T Consensus 4 ~pIIgIaG~SGSGKTTva~~l~~i~~~~-~v~~~iI~ 39 (288)
T d1a7ja_ 4 HPIISVTGSSGAGTSTVKHTFDQIFRRE-GVKAVSIE 39 (288)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHHHH-TCCEEEEE
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHhhc-CCCeEEEe
Confidence 4689999999999999999999988655 45666665
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=96.91 E-value=0.00023 Score=56.70 Aligned_cols=26 Identities=15% Similarity=0.078 Sum_probs=22.9
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhcc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
...++|.||+|+|||||++.++....
T Consensus 29 ~~~i~i~G~~G~GKTsLl~~~~~~~~ 54 (283)
T d2fnaa2 29 APITLVLGLRRTGKSSIIKIGINELN 54 (283)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCcHHHHHHHHHHHCC
Confidence 45799999999999999999988764
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=96.90 E-value=0.00039 Score=57.88 Aligned_cols=35 Identities=26% Similarity=0.249 Sum_probs=28.1
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcccc-CCCeEEEEc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDE-FQKRVVIVD 62 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~-~g~~v~~i~ 62 (241)
+|.|.|++||||||+.+.|...+... .+.+|..++
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is 117 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPEHRRVELIT 117 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEE
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEe
Confidence 79999999999999999999988643 235666665
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=96.89 E-value=0.00018 Score=53.52 Aligned_cols=22 Identities=23% Similarity=0.235 Sum_probs=19.5
Q ss_pred EEEEeCCCchHHHHHHHHHHhc
Q 026207 29 FLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~l 50 (241)
++|+|++|+|||||++.+.+.-
T Consensus 5 i~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 5 LLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEECCCCCCHHHHHHHHcCCC
Confidence 7899999999999999987643
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=96.89 E-value=0.00026 Score=60.31 Aligned_cols=32 Identities=19% Similarity=0.233 Sum_probs=27.5
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
..++|.||||+|||++.++++..+. .+++.+.
T Consensus 155 ~~~~~~g~~~~gk~~~~~~~~~~~~----~~~i~in 186 (362)
T d1svma_ 155 RYWLFKGPIDSGKTTLAAALLELCG----GKALNVN 186 (362)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHC----CEEECCS
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC----CCEEEEE
Confidence 3799999999999999999999874 5667665
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=96.87 E-value=0.00024 Score=53.19 Aligned_cols=21 Identities=19% Similarity=0.180 Sum_probs=19.3
Q ss_pred EEEEeCCCchHHHHHHHHHHh
Q 026207 29 FLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~ 49 (241)
++|+|.||||||||++.+.+.
T Consensus 18 I~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 18 VIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEESTTSSHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 889999999999999998874
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.84 E-value=0.00027 Score=54.70 Aligned_cols=22 Identities=18% Similarity=-0.037 Sum_probs=20.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHh
Q 026207 28 FFLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~ 49 (241)
.|+|+|+||+|||||++.+.+.
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.80 E-value=0.0018 Score=55.61 Aligned_cols=22 Identities=14% Similarity=0.190 Sum_probs=20.4
Q ss_pred EEEEeCCCchHHHHHHHHHHhc
Q 026207 29 FLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~l 50 (241)
|+|+|.||+|||||+++|.|.-
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 9999999999999999999843
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=96.77 E-value=0.00039 Score=53.07 Aligned_cols=21 Identities=24% Similarity=0.115 Sum_probs=18.2
Q ss_pred EEEEEeCCCchHHHHHHHHHH
Q 026207 28 FFLSYFRPGVGKTTVMREIAR 48 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~ 48 (241)
++.|+|++||||||+++.+..
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 577999999999999988753
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.75 E-value=0.00016 Score=55.04 Aligned_cols=21 Identities=24% Similarity=0.254 Sum_probs=19.0
Q ss_pred EEEEeCCCchHHHHHHHHHHh
Q 026207 29 FLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~ 49 (241)
|+|+|+|++|||||+++|++.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999998754
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=96.74 E-value=0.00034 Score=61.11 Aligned_cols=26 Identities=31% Similarity=0.381 Sum_probs=23.1
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhcc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
...+|++||||||||-|++.||+.+.
T Consensus 49 ksNILliGPTGvGKTlLAr~LAk~l~ 74 (443)
T d1g41a_ 49 PKNILMIGPTGVGKTEIARRLAKLAN 74 (443)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred cccEEEECCCCCCHHHHHHHHHHHhC
Confidence 34699999999999999999999773
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.72 E-value=0.00064 Score=52.73 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=23.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDE 53 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~ 53 (241)
+|+|-|+.||||||+++.|+..+...
T Consensus 4 fIviEG~dGsGKsT~~~~L~~~L~~~ 29 (210)
T d4tmka_ 4 YIVIEGLEGAGKTTARNVVVETLEQL 29 (210)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 78999999999999999999988655
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=96.68 E-value=0.00044 Score=51.45 Aligned_cols=22 Identities=27% Similarity=0.019 Sum_probs=19.2
Q ss_pred EEEEeCCCchHHHHHHHHHHhc
Q 026207 29 FLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~l 50 (241)
++|+|++|+|||||++.+...-
T Consensus 5 i~i~G~~~~GKTsLl~~l~~~~ 26 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIASGQ 26 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 6789999999999999987643
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=96.66 E-value=0.0003 Score=53.85 Aligned_cols=24 Identities=25% Similarity=0.198 Sum_probs=21.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
+|+|.|+.||||||+++.|+..+.
T Consensus 11 ~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 11 TVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp EEEEECSTTSCHHHHHHTTGGGTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 799999999999999999988764
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.66 E-value=0.00046 Score=51.34 Aligned_cols=21 Identities=14% Similarity=0.267 Sum_probs=18.9
Q ss_pred EEEEeCCCchHHHHHHHHHHh
Q 026207 29 FLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~ 49 (241)
++++|++|+|||||++.+...
T Consensus 5 v~liG~~~vGKSsLi~rl~~~ 25 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCKG 25 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988863
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=96.63 E-value=0.00047 Score=54.83 Aligned_cols=26 Identities=38% Similarity=0.434 Sum_probs=22.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDE 53 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~ 53 (241)
.++|.||||+||||+++.++..+...
T Consensus 36 ~~Ll~Gp~G~GKtt~a~~~~~~l~~~ 61 (239)
T d1njfa_ 36 AYLFSGTRGVGKTSIARLLAKGLNCE 61 (239)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHCT
T ss_pred eEEEECCCCCcHHHHHHHHHHHhcCc
Confidence 58999999999999999999887543
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.62 E-value=0.00046 Score=52.19 Aligned_cols=21 Identities=33% Similarity=0.411 Sum_probs=19.5
Q ss_pred EEEEeCCCchHHHHHHHHHHh
Q 026207 29 FLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~ 49 (241)
|+|+|.+|+|||||++++++.
T Consensus 11 V~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 11 VAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp EEEECSTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHHCC
Confidence 799999999999999999874
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.60 E-value=0.00056 Score=50.94 Aligned_cols=22 Identities=18% Similarity=0.246 Sum_probs=19.7
Q ss_pred EEEEeCCCchHHHHHHHHHHhc
Q 026207 29 FLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~l 50 (241)
++++|++|+|||||++.+++.-
T Consensus 6 i~viG~~~vGKTsli~~l~~~~ 27 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 7899999999999999998743
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=96.58 E-value=0.00027 Score=53.44 Aligned_cols=21 Identities=19% Similarity=0.292 Sum_probs=19.3
Q ss_pred EEEEeCCCchHHHHHHHHHHh
Q 026207 29 FLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~ 49 (241)
|+|+|.|++|||||++.|++.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999764
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=96.57 E-value=0.00013 Score=52.24 Aligned_cols=37 Identities=22% Similarity=0.314 Sum_probs=24.6
Q ss_pred cEEEEEeCCCchHHHHHH-HHHHhccccCCCeEEEEcCC
Q 026207 27 DFFLSYFRPGVGKTTVMR-EIARVLSDEFQKRVVIVDTS 64 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~-~l~~~l~~~~g~~v~~i~~~ 64 (241)
..++|.+|||+|||+.+. .+....... +.+++++...
T Consensus 8 ~~~il~~~tGsGKT~~~~~~~~~~~~~~-~~~vli~~p~ 45 (140)
T d1yksa1 8 MTTVLDFHPGAGKTRRFLPQILAECARR-RLRTLVLAPT 45 (140)
T ss_dssp CEEEECCCTTSSTTTTHHHHHHHHHHHT-TCCEEEEESS
T ss_pred CcEEEEcCCCCChhHHHHHHHHHHhhhc-Cceeeeeecc
Confidence 468899999999996653 444444333 4667776633
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.56 E-value=0.00059 Score=51.08 Aligned_cols=21 Identities=29% Similarity=0.377 Sum_probs=19.1
Q ss_pred EEEEeCCCchHHHHHHHHHHh
Q 026207 29 FLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~ 49 (241)
++++|++|+|||||++.+.+.
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 789999999999999998864
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.55 E-value=0.0006 Score=50.96 Aligned_cols=21 Identities=29% Similarity=0.227 Sum_probs=19.3
Q ss_pred EEEEeCCCchHHHHHHHHHHh
Q 026207 29 FLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~ 49 (241)
++++|++|+|||||++.++..
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 889999999999999998864
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.55 E-value=0.00057 Score=56.21 Aligned_cols=25 Identities=24% Similarity=0.228 Sum_probs=21.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSD 52 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~ 52 (241)
++.|.|++|||||||...|...+..
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L~~ 53 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHLME 53 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHHHH
Confidence 6889999999999999988776643
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.55 E-value=0.00059 Score=51.21 Aligned_cols=21 Identities=19% Similarity=0.390 Sum_probs=19.0
Q ss_pred EEEEeCCCchHHHHHHHHHHh
Q 026207 29 FLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~ 49 (241)
++++|++|+|||||++.+...
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 789999999999999998764
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=96.54 E-value=0.00055 Score=53.42 Aligned_cols=27 Identities=22% Similarity=0.333 Sum_probs=23.3
Q ss_pred eccEEEEEeCCCchHHHHHHHHHHhcc
Q 026207 25 IFDFFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 25 ~~g~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
....++|.||+|+||||+++.++..+.
T Consensus 23 l~h~lLl~Gp~G~GKtt~a~~~a~~l~ 49 (207)
T d1a5ta2 23 GHHALLIQALPGMGDDALIYALSRYLL 49 (207)
T ss_dssp CCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cCeEEEEECCCCCcHHHHHHHHHHhcc
Confidence 344699999999999999999998774
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.53 E-value=0.00066 Score=50.77 Aligned_cols=21 Identities=19% Similarity=0.271 Sum_probs=19.2
Q ss_pred EEEEeCCCchHHHHHHHHHHh
Q 026207 29 FLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~ 49 (241)
++|+|.+|+|||||++.++..
T Consensus 8 i~lvG~~~vGKTsLi~r~~~~ 28 (171)
T d2erya1 8 LVVVGGGGVGKSALTIQFIQS 28 (171)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 889999999999999998764
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.53 E-value=0.00022 Score=52.68 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=19.7
Q ss_pred EEEEeCCCchHHHHHHHHHHh
Q 026207 29 FLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~ 49 (241)
++|+|.|++|||||++++++.
T Consensus 3 I~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999985
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=96.51 E-value=0.0018 Score=49.44 Aligned_cols=39 Identities=21% Similarity=0.308 Sum_probs=25.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNE 66 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e 66 (241)
-+++.+|+|+|||.....++.......+.+++++.....
T Consensus 25 n~lv~~pTGsGKT~i~~~~~~~~~~~~~~~il~i~P~~~ 63 (200)
T d1wp9a1 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKP 63 (200)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHH
T ss_pred CeEEEeCCCCcHHHHHHHHHHHHHHhcCCcEEEEcCchH
Confidence 467889999999986555554332233467888874433
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=96.50 E-value=0.00024 Score=53.32 Aligned_cols=22 Identities=14% Similarity=0.131 Sum_probs=20.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHh
Q 026207 28 FFLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~ 49 (241)
-|+|+|+|++|||||+++|.+.
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~ 39 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQ 39 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5999999999999999998764
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.49 E-value=0.00067 Score=50.98 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=19.2
Q ss_pred EEEEeCCCchHHHHHHHHHHh
Q 026207 29 FLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~ 49 (241)
++++|++|+|||||++.+.+.
T Consensus 7 i~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999998764
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.46 E-value=0.00077 Score=50.39 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=19.3
Q ss_pred EEEEeCCCchHHHHHHHHHHh
Q 026207 29 FLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~ 49 (241)
++|+|++|+|||||++.++..
T Consensus 8 i~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999999874
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.45 E-value=0.00077 Score=50.14 Aligned_cols=22 Identities=18% Similarity=0.199 Sum_probs=19.7
Q ss_pred EEEEeCCCchHHHHHHHHHHhc
Q 026207 29 FLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~l 50 (241)
++++|++|+|||||++.++..-
T Consensus 6 i~lvG~~~vGKTsLi~r~~~~~ 27 (167)
T d1kaoa_ 6 VVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCcCHHHHHHHHHhCC
Confidence 7899999999999999998753
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.45 E-value=0.00078 Score=50.03 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=19.6
Q ss_pred EEEEeCCCchHHHHHHHHHHhc
Q 026207 29 FLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~l 50 (241)
++++|++|+|||||++.++..-
T Consensus 5 i~vvG~~~vGKTSli~~l~~~~ 26 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVEDK 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCcCHHHHHHHHHhCC
Confidence 7899999999999999988753
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.45 E-value=0.00064 Score=51.54 Aligned_cols=21 Identities=33% Similarity=0.409 Sum_probs=19.0
Q ss_pred EEEEeCCCchHHHHHHHHHHh
Q 026207 29 FLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~ 49 (241)
++|.|++|+|||||++.++..
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 789999999999999998864
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=96.44 E-value=0.00083 Score=52.24 Aligned_cols=21 Identities=29% Similarity=0.202 Sum_probs=18.5
Q ss_pred EEEEEeCCCchHHHHHHHHHH
Q 026207 28 FFLSYFRPGVGKTTVMREIAR 48 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~ 48 (241)
++.|+|++||||||.++.+..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 688999999999999987753
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=96.42 E-value=0.00073 Score=50.53 Aligned_cols=22 Identities=27% Similarity=0.289 Sum_probs=19.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHh
Q 026207 28 FFLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~ 49 (241)
-++++|++|+|||||++.+.+.
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3899999999999999988653
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.41 E-value=0.00082 Score=49.96 Aligned_cols=22 Identities=18% Similarity=0.356 Sum_probs=19.4
Q ss_pred EEEEeCCCchHHHHHHHHHHhc
Q 026207 29 FLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~l 50 (241)
++|+|++|+|||||++.+...-
T Consensus 7 ivlvG~~~vGKTsli~~~~~~~ 28 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTEKK 28 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCcCHHHHHHHHHhCC
Confidence 7889999999999999988643
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=96.41 E-value=0.00082 Score=57.01 Aligned_cols=37 Identities=24% Similarity=0.282 Sum_probs=25.6
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhc---cccCCCeEEEEc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVL---SDEFQKRVVIVD 62 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l---~~~~g~~v~~i~ 62 (241)
.++++|+||||+||||++..+...+ ....+.+|+...
T Consensus 163 ~~~~vI~G~pGTGKTt~i~~~l~~l~~~~~~~~~~I~l~A 202 (359)
T d1w36d1 163 RRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAA 202 (359)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEB
T ss_pred CCeEEEEcCCCCCceehHHHHHHHHHHHHhccCCeEEEec
Confidence 5699999999999999986544332 122345666654
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.40 E-value=0.00078 Score=50.24 Aligned_cols=21 Identities=19% Similarity=0.327 Sum_probs=18.8
Q ss_pred EEEEeCCCchHHHHHHHHHHh
Q 026207 29 FLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~ 49 (241)
++++|.+|+|||||++.++..
T Consensus 5 i~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999988863
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=96.39 E-value=0.001 Score=49.78 Aligned_cols=28 Identities=21% Similarity=0.189 Sum_probs=24.3
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhcccc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDE 53 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~ 53 (241)
..+++|.|+-||||||+.+.++..+...
T Consensus 33 g~ii~L~G~LGaGKTtfvr~~~~~lg~~ 60 (158)
T d1htwa_ 33 AIMVYLNGDLGAGKTTLTRGMLQGIGHQ 60 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred CeEEEEecCCCccHHHHHHHHHhhcccc
Confidence 3489999999999999999999988543
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=96.38 E-value=0.00082 Score=52.12 Aligned_cols=20 Identities=25% Similarity=0.099 Sum_probs=17.7
Q ss_pred EEEEEeCCCchHHHHHHHHH
Q 026207 28 FFLSYFRPGVGKTTVMREIA 47 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~ 47 (241)
++.|+|++||||||+++.+.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58899999999999988774
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.37 E-value=0.00092 Score=49.67 Aligned_cols=21 Identities=14% Similarity=0.088 Sum_probs=18.9
Q ss_pred EEEEeCCCchHHHHHHHHHHh
Q 026207 29 FLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~ 49 (241)
|+|+|++|+|||||++.++..
T Consensus 7 v~liG~~~vGKTsLl~~~~~~ 27 (167)
T d1xtqa1 7 IAILGYRSVGKSSLTIQFVEG 27 (167)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 788999999999999998764
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.37 E-value=0.00094 Score=49.41 Aligned_cols=21 Identities=19% Similarity=0.219 Sum_probs=19.0
Q ss_pred EEEEeCCCchHHHHHHHHHHh
Q 026207 29 FLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~ 49 (241)
++++|.+|+|||||++.+...
T Consensus 3 v~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999998864
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.37 E-value=0.00091 Score=50.60 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=19.1
Q ss_pred EEEEeCCCchHHHHHHHHHHh
Q 026207 29 FLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~ 49 (241)
++++|.+|+|||||++.++..
T Consensus 5 v~vvG~~~vGKSSLi~~l~~~ 25 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVNK 25 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999998863
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.35 E-value=0.00095 Score=49.37 Aligned_cols=21 Identities=19% Similarity=0.161 Sum_probs=19.1
Q ss_pred EEEEeCCCchHHHHHHHHHHh
Q 026207 29 FLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~ 49 (241)
++++|++|+|||||++.+...
T Consensus 5 v~liG~~~vGKTsLl~~~~~~ 25 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCAG 25 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999999864
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=96.35 E-value=0.00081 Score=54.23 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=20.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHh
Q 026207 28 FFLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~ 49 (241)
-++|+|.||+|||||++.|++.
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~ 55 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGE 55 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4899999999999999999985
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.34 E-value=0.00098 Score=49.58 Aligned_cols=21 Identities=19% Similarity=0.132 Sum_probs=19.0
Q ss_pred EEEEeCCCchHHHHHHHHHHh
Q 026207 29 FLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~ 49 (241)
++|+|.+|+|||||++.+...
T Consensus 6 ivlvG~~~vGKTsLi~r~~~~ 26 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCEN 26 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999998863
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=96.33 E-value=0.00093 Score=50.56 Aligned_cols=22 Identities=18% Similarity=0.178 Sum_probs=20.1
Q ss_pred EEEEEeCCCchHHHHHHHHHHh
Q 026207 28 FFLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~ 49 (241)
.|.|+|.|.+|||||+++|++.
T Consensus 7 nIaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEEeCCCCcHHHHHHHHHHh
Confidence 4899999999999999999864
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.33 E-value=0.001 Score=49.83 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=19.1
Q ss_pred EEEEeCCCchHHHHHHHHHHh
Q 026207 29 FLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~ 49 (241)
++++|.+|+|||||++.+...
T Consensus 8 I~lvG~~~vGKTsll~~~~~~ 28 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIEK 28 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 889999999999999998764
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.33 E-value=0.00079 Score=53.38 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=21.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
..+|+|++|+|||||+++|.+...
T Consensus 97 t~~~~G~SGVGKSTLiN~L~~~~~ 120 (225)
T d1u0la2 97 ISTMAGLSGVGKSSLLNAINPGLK 120 (225)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred eEEEECCCCCCHHHHHHhhcchhh
Confidence 689999999999999999987543
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.32 E-value=0.0011 Score=49.80 Aligned_cols=21 Identities=19% Similarity=0.271 Sum_probs=19.1
Q ss_pred EEEEeCCCchHHHHHHHHHHh
Q 026207 29 FLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~ 49 (241)
++|+|.+|+|||||++.+...
T Consensus 9 v~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 9 LVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999998864
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=96.31 E-value=0.0013 Score=51.87 Aligned_cols=27 Identities=26% Similarity=0.149 Sum_probs=23.8
Q ss_pred eeeccEEEEEeCCCchHHHHHHHHHHh
Q 026207 23 KIIFDFFLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 23 ~~~~g~vll~Gp~GsGKTTLl~~l~~~ 49 (241)
.+..++|.|.|.+.+|||||+++|++.
T Consensus 2 ~~r~p~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 2 KIRSPIVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EECCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEEeCCCccHHHHHHHHHhh
Confidence 355688999999999999999999875
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.31 E-value=0.001 Score=49.79 Aligned_cols=21 Identities=24% Similarity=0.324 Sum_probs=19.0
Q ss_pred EEEEeCCCchHHHHHHHHHHh
Q 026207 29 FLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~ 49 (241)
++++|++|+|||||++.+...
T Consensus 9 I~vvG~~~vGKSSli~~~~~~ 29 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVTN 29 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999988764
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.29 E-value=0.0011 Score=49.54 Aligned_cols=22 Identities=14% Similarity=0.221 Sum_probs=19.6
Q ss_pred EEEEeCCCchHHHHHHHHHHhc
Q 026207 29 FLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~l 50 (241)
++++|++|+|||||++.+...-
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~~ 30 (170)
T d1r2qa_ 9 LVLLGESAVGKSSLVLRFVKGQ 30 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCcCHHHHHHHHHhCC
Confidence 7899999999999999998643
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.27 E-value=0.0011 Score=50.70 Aligned_cols=21 Identities=24% Similarity=0.338 Sum_probs=19.1
Q ss_pred EEEEeCCCchHHHHHHHHHHh
Q 026207 29 FLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~ 49 (241)
++|+|++|+|||||++.+...
T Consensus 9 ivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHhhC
Confidence 789999999999999998864
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.27 E-value=0.0011 Score=49.40 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=19.6
Q ss_pred EEEEeCCCchHHHHHHHHHHhc
Q 026207 29 FLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~l 50 (241)
++++|++|+|||||++.++..-
T Consensus 5 i~lvG~~~vGKTsli~r~~~~~ 26 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLTKR 26 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 6899999999999999998743
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.26 E-value=0.0011 Score=49.20 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=18.9
Q ss_pred EEEEeCCCchHHHHHHHHHHh
Q 026207 29 FLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~ 49 (241)
++|+|.+|+|||||++.+...
T Consensus 7 i~lvG~~~vGKTsli~rl~~~ 27 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVED 27 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 788999999999999998863
|
| >d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: ATP:corrinoid adenosyltransferase CobA species: Salmonella typhimurium [TaxId: 90371]
Probab=96.25 E-value=0.0037 Score=46.56 Aligned_cols=36 Identities=25% Similarity=0.222 Sum_probs=27.2
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
+|.+.+.=.+|=||||-+.-++-...- .|.+|+++.
T Consensus 2 kG~i~vytG~GKGKTTAAlG~alRA~G-~G~rV~ivQ 37 (157)
T d1g5ta_ 2 RGIIIVFTGNGKGKTTAAFGTAARAVG-HGKNVGVVQ 37 (157)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHH-TTCCEEEEE
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhc-CCCEEEEEE
Confidence 467777888899999988777655443 478888875
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.20 E-value=0.0012 Score=49.51 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=19.7
Q ss_pred EEEEeCCCchHHHHHHHHHHhc
Q 026207 29 FLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~l 50 (241)
++++|++|+|||||++.+.+.-
T Consensus 10 i~vvG~~~vGKTsli~~l~~~~ 31 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTDDT 31 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCcCHHHHHHHHHhCC
Confidence 8899999999999999988643
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.18 E-value=0.0013 Score=49.27 Aligned_cols=22 Identities=14% Similarity=0.046 Sum_probs=19.3
Q ss_pred EEEEeCCCchHHHHHHHHHHhc
Q 026207 29 FLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~l 50 (241)
++++|++|+|||||++.+...-
T Consensus 5 ivvvG~~~vGKTsLi~~~~~~~ 26 (177)
T d1kmqa_ 5 LVIVGDGACGKTCLLIVNSKDQ 26 (177)
T ss_dssp EEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCcCHHHHHHHHHhCC
Confidence 6788999999999999988753
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.18 E-value=0.0012 Score=49.17 Aligned_cols=21 Identities=38% Similarity=0.520 Sum_probs=19.0
Q ss_pred EEEEeCCCchHHHHHHHHHHh
Q 026207 29 FLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~ 49 (241)
++++|++|+|||||++.+.+.
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~ 24 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGV 24 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCcCHHHHHHHHhCC
Confidence 688999999999999998764
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=96.16 E-value=0.0013 Score=50.20 Aligned_cols=26 Identities=19% Similarity=0.194 Sum_probs=21.3
Q ss_pred eeeccEEEEEeCCCchHHHHHHHHHH
Q 026207 23 KIIFDFFLSYFRPGVGKTTVMREIAR 48 (241)
Q Consensus 23 ~~~~g~vll~Gp~GsGKTTLl~~l~~ 48 (241)
.+...-++|.||+|+||||++..+..
T Consensus 12 ~~~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 12 EVFGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EETTEEEEEEESSSSSHHHHHHHHHT
T ss_pred EECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 34444699999999999999988775
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=96.15 E-value=0.0014 Score=49.90 Aligned_cols=27 Identities=26% Similarity=0.113 Sum_probs=21.7
Q ss_pred eeeccEEEEEeCCCchHHHHHHHHHHh
Q 026207 23 KIIFDFFLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 23 ~~~~g~vll~Gp~GsGKTTLl~~l~~~ 49 (241)
.+...-++|.|++|+||||++..+...
T Consensus 11 ~~~g~gvl~~G~sG~GKStlal~l~~~ 37 (176)
T d1kkma_ 11 DIYGLGVLITGDSGVGKSETALELVQR 37 (176)
T ss_dssp EETTEEEEEECCTTSCHHHHHHHHHHT
T ss_pred EECCEEEEEEeCCCCCHHHHHHHHHHc
Confidence 344446999999999999999887753
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.15 E-value=0.0014 Score=48.85 Aligned_cols=21 Identities=24% Similarity=0.262 Sum_probs=19.2
Q ss_pred EEEEeCCCchHHHHHHHHHHh
Q 026207 29 FLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~ 49 (241)
++++|++|+|||||++.+...
T Consensus 9 i~vvG~~~vGKTsli~~~~~~ 29 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKDG 29 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 899999999999999988764
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=96.14 E-value=0.0014 Score=56.10 Aligned_cols=35 Identities=34% Similarity=0.423 Sum_probs=27.0
Q ss_pred EEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCC
Q 026207 29 FLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTS 64 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~ 64 (241)
++|+|++|+|||++++.++..+... |..++++|..
T Consensus 53 ~~I~G~tGsGKT~~l~~li~~~~~~-g~~~iiiD~k 87 (433)
T d1e9ra_ 53 LLVNGATGTGKSVLLRELAYTGLLR-GDRMVIVDPN 87 (433)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHT-TCEEEEEEET
T ss_pred EEEEeCCCCcHHHHHHHHHHHHHhC-CCCEEEEeCC
Confidence 8999999999999998777665443 5677777643
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=96.14 E-value=0.00077 Score=50.50 Aligned_cols=21 Identities=24% Similarity=0.210 Sum_probs=18.7
Q ss_pred EEEEeCCCchHHHHHHHHHHh
Q 026207 29 FLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~ 49 (241)
++++|++|+|||||++.++..
T Consensus 15 IvlvG~~~vGKTSli~rl~~~ 35 (173)
T d1e0sa_ 15 ILMLGLDAAGKTTILYKLKLG 35 (173)
T ss_dssp EEEEEETTSSHHHHHHHTTCC
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999988754
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=96.12 E-value=0.0009 Score=50.46 Aligned_cols=21 Identities=29% Similarity=0.289 Sum_probs=18.4
Q ss_pred EEEEEeCCCchHHHHHHHHHH
Q 026207 28 FFLSYFRPGVGKTTVMREIAR 48 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~ 48 (241)
-++++|++|+|||||++.+..
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 388999999999999998754
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.11 E-value=0.0015 Score=48.64 Aligned_cols=22 Identities=14% Similarity=0.176 Sum_probs=19.4
Q ss_pred EEEEeCCCchHHHHHHHHHHhc
Q 026207 29 FLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~l 50 (241)
++++|++|+|||||++.+...-
T Consensus 6 i~vvG~~~vGKTsLi~~~~~~~ 27 (170)
T d1ek0a_ 6 LVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCcCHHHHHHHHHhCC
Confidence 6889999999999999988653
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=96.09 E-value=0.00063 Score=55.33 Aligned_cols=42 Identities=21% Similarity=0.316 Sum_probs=26.9
Q ss_pred eccEEEEEeCCCchHHH-HHHHHHHhccccCCCeEEEEcCCccc
Q 026207 25 IFDFFLSYFRPGVGKTT-VMREIARVLSDEFQKRVVIVDTSNEI 67 (241)
Q Consensus 25 ~~g~vll~Gp~GsGKTT-Ll~~l~~~l~~~~g~~v~~i~~~~e~ 67 (241)
....+++.+|+|||||+ ++-.++....+. +.+++++....++
T Consensus 8 ~~~~~lv~~~TGsGKT~~~l~~~~~~~~~~-~~~~lvi~Ptr~L 50 (305)
T d2bmfa2 8 KKRLTIMDLHPGAGKTKRYLPAIVREAIKR-GLRTLILAPTRVV 50 (305)
T ss_dssp TTCEEEECCCTTSSTTTTHHHHHHHHHHHH-TCCEEEEESSHHH
T ss_pred cCCcEEEEECCCCCHHHHHHHHHHHHHHhc-CCEEEEEccHHHH
Confidence 34478999999999996 343444333223 4678888645444
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=96.08 E-value=0.0016 Score=48.60 Aligned_cols=21 Identities=19% Similarity=0.186 Sum_probs=18.9
Q ss_pred EEEEeCCCchHHHHHHHHHHh
Q 026207 29 FLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~ 49 (241)
++++|.+|+|||||++.++..
T Consensus 7 ivlvG~~~vGKTsli~~~~~~ 27 (168)
T d1u8za_ 7 VIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999998753
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.05 E-value=0.0016 Score=49.10 Aligned_cols=22 Identities=18% Similarity=0.096 Sum_probs=19.8
Q ss_pred EEEEeCCCchHHHHHHHHHHhc
Q 026207 29 FLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~l 50 (241)
++++|.+|+|||||++.++..-
T Consensus 8 ivviG~~~vGKTsli~~~~~~~ 29 (183)
T d1mh1a_ 8 CVVVGDGAVGKTCLLISYTTNA 29 (183)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 8999999999999999988743
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.03 E-value=0.00092 Score=52.41 Aligned_cols=25 Identities=12% Similarity=0.032 Sum_probs=22.7
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
.+|.|-|+-||||||+++.|+..+.
T Consensus 3 k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 3 KKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3789999999999999999999875
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=96.01 E-value=0.0019 Score=48.89 Aligned_cols=26 Identities=19% Similarity=0.114 Sum_probs=21.2
Q ss_pred eeccEEEEEeCCCchHHHHHHHHHHh
Q 026207 24 IIFDFFLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 24 ~~~g~vll~Gp~GsGKTTLl~~l~~~ 49 (241)
+...-++|.|++|+||||++..+...
T Consensus 13 ~~g~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 13 VYGVGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred ECCEEEEEEeCCCCCHHHHHHHHHHc
Confidence 33446999999999999999877764
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.00 E-value=0.0016 Score=48.81 Aligned_cols=22 Identities=32% Similarity=0.312 Sum_probs=19.6
Q ss_pred EEEEeCCCchHHHHHHHHHHhc
Q 026207 29 FLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~l 50 (241)
++++|++|+|||||++.+.+.-
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEECCCCcCHHHHHHHHHhCc
Confidence 7899999999999999998653
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=96.00 E-value=0.0014 Score=53.08 Aligned_cols=38 Identities=24% Similarity=0.313 Sum_probs=23.4
Q ss_pred eccEEEEEeCCCchHHHHHHH-HHHhcccc--CCCeEEEEc
Q 026207 25 IFDFFLSYFRPGVGKTTVMRE-IARVLSDE--FQKRVVIVD 62 (241)
Q Consensus 25 ~~g~vll~Gp~GsGKTTLl~~-l~~~l~~~--~g~~v~~i~ 62 (241)
+.|-++|.|+|||||||++-. ++.++... ...+|+++.
T Consensus 13 ~~~~~lI~g~aGTGKTt~l~~rv~~ll~~~~~~~~~ILvlt 53 (306)
T d1uaaa1 13 VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVT 53 (306)
T ss_dssp CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred CCCCEEEEeeCCccHHHHHHHHHHHHHHhcCCChhHEEEEe
Confidence 346688999999999987643 33332211 113676665
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.99 E-value=0.00069 Score=53.95 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=20.0
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
...+|+|++|+|||||+++|.+...
T Consensus 98 ~~~vl~G~SGVGKSSLiN~L~~~~~ 122 (231)
T d1t9ha2 98 KTTVFAGQSGVGKSSLLNAISPELG 122 (231)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC---
T ss_pred ceEEEECCCCccHHHHHHhhccHhH
Confidence 3678999999999999999987543
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.99 E-value=0.0018 Score=48.01 Aligned_cols=22 Identities=18% Similarity=0.315 Sum_probs=19.5
Q ss_pred EEEEeCCCchHHHHHHHHHHhc
Q 026207 29 FLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~l 50 (241)
++++|.+|+|||||++.+...-
T Consensus 6 ivvvG~~~vGKTsli~r~~~~~ 27 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7899999999999999988653
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.94 E-value=0.0011 Score=49.74 Aligned_cols=21 Identities=33% Similarity=0.365 Sum_probs=8.3
Q ss_pred EEEEeCCCchHHHHHHHHHHh
Q 026207 29 FLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~ 49 (241)
+++.|.+|+|||||++.+++.
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEECCCCC------------
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 788899999999999988763
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.92 E-value=0.0025 Score=50.04 Aligned_cols=25 Identities=16% Similarity=0.178 Sum_probs=22.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSD 52 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~ 52 (241)
+|+|-|+-||||||+++.|+..+..
T Consensus 4 ~IviEG~~GsGKST~~~~L~~~l~~ 28 (241)
T d2ocpa1 4 RLSIEGNIAVGKSTFVKLLTKTYPE 28 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHhh
Confidence 7899999999999999999998864
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.91 E-value=0.0021 Score=47.90 Aligned_cols=21 Identities=19% Similarity=0.248 Sum_probs=18.9
Q ss_pred EEEEeCCCchHHHHHHHHHHh
Q 026207 29 FLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~ 49 (241)
++++|++|+|||||++.++..
T Consensus 7 i~lvG~~~vGKTsll~~~~~~ 27 (169)
T d1x1ra1 7 LVVVGDGGVGKSALTIQFFQK 27 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 678999999999999998864
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.90 E-value=0.001 Score=49.75 Aligned_cols=21 Identities=24% Similarity=0.205 Sum_probs=17.2
Q ss_pred EEEEeCCCchHHHHHHHHHHh
Q 026207 29 FLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~ 49 (241)
++++|++|+|||||++.++..
T Consensus 6 i~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 6 LVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEECTTSSHHHHHHTTC--
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 788899999999999887653
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.88 E-value=0.0023 Score=48.46 Aligned_cols=21 Identities=24% Similarity=0.156 Sum_probs=19.1
Q ss_pred EEEEeCCCchHHHHHHHHHHh
Q 026207 29 FLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~ 49 (241)
++|+|.+|+|||||++.++..
T Consensus 12 i~lvG~~~vGKTsLi~r~~~~ 32 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYAND 32 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhhC
Confidence 889999999999999998764
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.79 E-value=0.0026 Score=47.96 Aligned_cols=22 Identities=18% Similarity=0.191 Sum_probs=19.4
Q ss_pred EEEEeCCCchHHHHHHHHHHhc
Q 026207 29 FLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~l 50 (241)
++++|++|+|||||++.++..-
T Consensus 5 ivliG~~~vGKTsli~r~~~~~ 26 (179)
T d1m7ba_ 5 IVVVGDSQCGKTALLHVFAKDC 26 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCcCHHHHHHHHHhCC
Confidence 6899999999999999888743
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=95.77 E-value=0.0029 Score=49.76 Aligned_cols=23 Identities=17% Similarity=-0.005 Sum_probs=20.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
+|.|+|+.||||||.++.|....
T Consensus 3 iIgiTG~igSGKsTva~~l~e~~ 25 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMSNY 25 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 68999999999999999987653
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.77 E-value=0.0032 Score=49.08 Aligned_cols=26 Identities=23% Similarity=0.123 Sum_probs=23.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDE 53 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~ 53 (241)
+|.|-|+-||||||+++.|+..+...
T Consensus 5 ~I~iEG~DGsGKST~~~~L~~~L~~~ 30 (214)
T d1tmka_ 5 LILIEGLDRTGKTTQCNILYKKLQPN 30 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTTS
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhC
Confidence 79999999999999999999988643
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.76 E-value=0.0027 Score=48.26 Aligned_cols=22 Identities=18% Similarity=0.082 Sum_probs=19.4
Q ss_pred EEEEeCCCchHHHHHHHHHHhc
Q 026207 29 FLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~l 50 (241)
++++|++|+|||||++.+...-
T Consensus 6 vvllG~~~vGKTSli~r~~~~~ 27 (191)
T d2ngra_ 6 CVVVGDGAVGKTCLLISYTTNK 27 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCcCHHHHHHHHHhCC
Confidence 7899999999999999887654
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=95.66 E-value=0.021 Score=46.23 Aligned_cols=23 Identities=22% Similarity=-0.012 Sum_probs=19.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
.+.|+|+.|+|||||+-+++...
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~ 30 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYT 30 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHhc
Confidence 47899999999999999997544
|
| >d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Dethiobiotin synthetase species: Escherichia coli [TaxId: 562]
Probab=95.64 E-value=0.0041 Score=47.57 Aligned_cols=34 Identities=15% Similarity=0.048 Sum_probs=30.2
Q ss_pred EEEEEeCC-CchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 28 FFLSYFRP-GVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 28 ~vll~Gp~-GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
-+.|+|-. |+||||+.-.|+..++.. |.+|++++
T Consensus 3 ~~~i~gt~~GVGKTtvs~~La~aLa~~-G~rVl~id 37 (224)
T d1byia_ 3 RYFVTGTDTEVGKTVASCALLQAAKAA-GYRTAGYK 37 (224)
T ss_dssp EEEEEESSTTSCHHHHHHHHHHHHHHT-TCCEEEEC
T ss_pred eEEEEECCCCccHHHHHHHHHHHHHHC-CCeEEEEC
Confidence 46789985 999999999999999877 89999997
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.63 E-value=0.0027 Score=48.04 Aligned_cols=19 Identities=21% Similarity=0.294 Sum_probs=17.5
Q ss_pred EEEEeCCCchHHHHHHHHH
Q 026207 29 FLSYFRPGVGKTTVMREIA 47 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~ 47 (241)
++++|.+|+|||||++.+.
T Consensus 5 ivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 5 ILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 6899999999999999983
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.61 E-value=0.0033 Score=47.29 Aligned_cols=23 Identities=9% Similarity=-0.019 Sum_probs=20.1
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++++|++|+|||||++.+...-
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~~ 29 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTGS 29 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999888753
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=95.61 E-value=0.0027 Score=51.83 Aligned_cols=20 Identities=30% Similarity=0.293 Sum_probs=16.5
Q ss_pred ccEEEEEeCCCchHHHHHHH
Q 026207 26 FDFFLSYFRPGVGKTTVMRE 45 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~ 45 (241)
.|-++|.|+|||||||.+-.
T Consensus 24 ~g~~lV~g~aGSGKTt~l~~ 43 (318)
T d1pjra1 24 EGPLLIMAGAGSGKTRVLTH 43 (318)
T ss_dssp SSCEEEEECTTSCHHHHHHH
T ss_pred CCCEEEEecCCccHHHHHHH
Confidence 45688999999999987743
|
| >d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=95.52 E-value=0.0047 Score=49.70 Aligned_cols=35 Identities=34% Similarity=0.494 Sum_probs=31.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcC
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDT 63 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~ 63 (241)
+++++|.-|+||||+...++..++.. |++|+.++.
T Consensus 10 ~i~~sGKGGVGKTTvaa~lA~~lA~~-G~rVLlvD~ 44 (296)
T d1ihua1 10 YLFFTGKGGVGKTSISCATAIRLAEQ-GKRVLLVST 44 (296)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEEC
T ss_pred EEEEECCCcChHHHHHHHHHHHHHHC-CCCEEEEeC
Confidence 67899999999999999999999876 789998873
|
| >d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=95.48 E-value=0.005 Score=49.32 Aligned_cols=37 Identities=30% Similarity=0.324 Sum_probs=32.4
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcC
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDT 63 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~ 63 (241)
+.++.++|.=|+||||+.-.|+..++.. |++|+.+|-
T Consensus 20 ~~iii~sGKGGVGKTT~a~nLA~~lA~~-G~rVllvD~ 56 (279)
T d1ihua2 20 HGLIMLMGKGGVGKTTMAAAIAVRLADM-GFDVHLTTS 56 (279)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEES
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHC-CCcEEEEeC
Confidence 3489999999999999999999988766 789999983
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=95.47 E-value=0.0038 Score=52.19 Aligned_cols=35 Identities=20% Similarity=0.280 Sum_probs=30.1
Q ss_pred EEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCC
Q 026207 29 FLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTS 64 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~ 64 (241)
|.|-|+-|+||||+++.++..+... +..+.++.++
T Consensus 8 I~IEG~iGsGKSTl~~~L~~~l~~~-g~~v~~~~EP 42 (331)
T d1osna_ 8 IYLDGAYGIGKTTAAEEFLHHFAIT-PNRILLIGEP 42 (331)
T ss_dssp EEEEESSSSCTTHHHHHHHHTTTTS-GGGEEEECCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhc-CCceEEEeCc
Confidence 8899999999999999999988755 5677888766
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.44 E-value=0.0036 Score=48.86 Aligned_cols=29 Identities=14% Similarity=0.036 Sum_probs=21.5
Q ss_pred EEEEeCCCchHHHHHHHHH-HhccccCCCe
Q 026207 29 FLSYFRPGVGKTTVMREIA-RVLSDEFQKR 57 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~-~~l~~~~g~~ 57 (241)
++++|++|+|||||++.+. +...|+.|..
T Consensus 9 illlG~~~vGKTsll~~~~~~~~~pTiG~~ 38 (221)
T d1azta2 9 LLLLGAGESGKSTIVKQMRILHVVLTSGIF 38 (221)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCCCSCE
T ss_pred EEEECCCCCCHHHHHHHHhcCCcCCCCCeE
Confidence 7999999999999999874 3333444443
|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.27 E-value=0.012 Score=45.33 Aligned_cols=31 Identities=29% Similarity=0.169 Sum_probs=23.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
-.++..|+|+|||-++..++..+. .+++++.
T Consensus 87 ~~ll~~~tG~GKT~~a~~~~~~~~----~~~Liv~ 117 (206)
T d2fz4a1 87 RGCIVLPTGSGKTHVAMAAINELS----TPTLIVV 117 (206)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSC----SCEEEEE
T ss_pred CcEEEeCCCCCceehHHhHHHHhc----CceeEEE
Confidence 467889999999988777776653 4556665
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=95.23 E-value=0.0074 Score=50.38 Aligned_cols=35 Identities=20% Similarity=0.102 Sum_probs=28.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCC
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTS 64 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~ 64 (241)
.|.|-|+-|+||||+++.|+..+... ..+.++.++
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~~--~~v~~~~EP 42 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASGG--SPTLYFPEP 42 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGCS--SCEEEECCC
T ss_pred EEEEECCccCCHHHHHHHHHHHhccC--CCeEEEeCc
Confidence 37899999999999999999988655 456677655
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.16 E-value=0.0056 Score=45.97 Aligned_cols=22 Identities=18% Similarity=0.253 Sum_probs=19.4
Q ss_pred EEEEeCCCchHHHHHHHHHHhc
Q 026207 29 FLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~l 50 (241)
++++|..|+|||||++.+...-
T Consensus 5 iv~lG~~~vGKTsll~r~~~~~ 26 (200)
T d2bcjq2 5 LLLLGTGESGKSTFIKQMRIIH 26 (200)
T ss_dssp EEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6899999999999999987653
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.03 E-value=0.0058 Score=50.26 Aligned_cols=23 Identities=26% Similarity=0.215 Sum_probs=19.2
Q ss_pred EEEEeCCCchHHHHHHHHHHhcc
Q 026207 29 FLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
|.|.|-|.+|||||++++.+.-.
T Consensus 3 v~lvG~pn~GKStlfn~lt~~~~ 25 (319)
T d1wxqa1 3 IGVVGKPNVGKSTFFSAATLVDV 25 (319)
T ss_dssp EEEEECTTSSHHHHHHHHHC---
T ss_pred EeEECCCCCCHHHHHHHHHCCCC
Confidence 78999999999999999998654
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=95.02 E-value=0.013 Score=47.19 Aligned_cols=26 Identities=19% Similarity=0.233 Sum_probs=23.2
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhcc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
+..+.|.||+++||||++..++..+.
T Consensus 104 ~n~~~l~G~~~tGKS~f~~~i~~~lg 129 (267)
T d1u0ja_ 104 RNTIWLFGPATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 44789999999999999999999884
|
| >d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Clostridium pasteurianum [TaxId: 1501]
Probab=94.76 E-value=0.012 Score=46.85 Aligned_cols=34 Identities=24% Similarity=0.376 Sum_probs=30.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
.|+|+|.=|+||||+.-.|+..++.. |.+|+.||
T Consensus 3 ~Iai~gKGGvGKTT~a~nLA~~LA~~-G~rVllID 36 (269)
T d1cp2a_ 3 QVAIYGKGGIGKSTTTQNLTSGLHAM-GKTIMVVG 36 (269)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHTT-TCCEEEEE
T ss_pred EEEEECCCcCCHHHHHHHHHHHHHhC-CCcEEEEe
Confidence 46789999999999999999999865 88999997
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.74 E-value=0.012 Score=43.82 Aligned_cols=25 Identities=16% Similarity=0.236 Sum_probs=20.7
Q ss_pred EEEEeCCCchHHHHHHHHHHhcccc
Q 026207 29 FLSYFRPGVGKTTVMREIARVLSDE 53 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~l~~~ 53 (241)
+++.|..|+|||||++.+...-.++
T Consensus 5 ivllG~~~vGKTsl~~r~~~~~~~t 29 (195)
T d1svsa1 5 LLLLGAGESGKSTIVKQMKIIHEAG 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhhCCCCC
Confidence 6899999999999999987654444
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=94.71 E-value=0.014 Score=46.41 Aligned_cols=34 Identities=26% Similarity=0.305 Sum_probs=25.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
-|+|.||+|+|||++++.|...-... ....+.++
T Consensus 25 pvlI~Ge~GtGK~~~A~~ih~~s~~~-~~~~~~~~ 58 (247)
T d1ny5a2 25 PVLITGESGVGKEVVARLIHKLSDRS-KEPFVALN 58 (247)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHSTTT-TSCEEEEE
T ss_pred CEEEECCCCcCHHHHHHHHHHhcCCc-ccccccch
Confidence 37999999999999999998765444 34445555
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.60 E-value=0.0086 Score=46.08 Aligned_cols=37 Identities=14% Similarity=-0.135 Sum_probs=27.4
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccC--CCeEEEEc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEF--QKRVVIVD 62 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~--g~~v~~i~ 62 (241)
...++|.||||+||||+++.++..+.... ...+.++.
T Consensus 15 ~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D~~~i~ 53 (198)
T d2gnoa2 15 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEID 53 (198)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEEC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHhccccCCCCEEEEe
Confidence 34799999999999999999998764221 12356665
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=94.59 E-value=0.0091 Score=48.69 Aligned_cols=21 Identities=33% Similarity=0.343 Sum_probs=20.0
Q ss_pred EEEEeCCCchHHHHHHHHHHh
Q 026207 29 FLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~ 49 (241)
+.|+|.|.+|||||++++++.
T Consensus 13 iGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 13 TGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp EEEEECSSSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
Confidence 899999999999999999975
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=94.59 E-value=0.15 Score=40.69 Aligned_cols=23 Identities=22% Similarity=0.118 Sum_probs=19.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
.+.|+|+.|+|||||+.+++...
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~ 26 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKT 26 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEEcCCCCcHHHHHHHHHHHc
Confidence 47889999999999999997654
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=94.43 E-value=0.013 Score=47.90 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=23.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDE 53 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~ 53 (241)
-.+|.|++|+|||||+.+++.....+
T Consensus 45 r~~I~g~~g~GKT~l~~~i~~~~~~~ 70 (289)
T d1xpua3 45 RGLIVAPPKAGKTMLLQNIAQSIAYN 70 (289)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHHH
T ss_pred eeeEeCCCCCCHHHHHHHHHHHHhhc
Confidence 49999999999999999999877544
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=94.30 E-value=0.0081 Score=48.55 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=20.4
Q ss_pred EEEEeCCCchHHHHHHHHHHhccc
Q 026207 29 FLSYFRPGVGKTTVMREIARVLSD 52 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~l~~ 52 (241)
+.|+|-|.+|||||++++++.-.+
T Consensus 5 ~GivG~Pn~GKSTlf~~lt~~~~~ 28 (278)
T d1jala1 5 CGIVGLPNVGKSTLFNALTKAGIE 28 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHTC--
T ss_pred EEEECCCCCCHHHHHHHHHCCCCc
Confidence 789999999999999999986543
|
| >d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=94.01 E-value=0.02 Score=44.06 Aligned_cols=33 Identities=30% Similarity=0.388 Sum_probs=28.3
Q ss_pred EEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 29 FLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
....|..|+||||+...++..++.. |.+|+.+|
T Consensus 5 av~s~KGGvGKTtia~nlA~~la~~-g~~VlliD 37 (232)
T d1hyqa_ 5 TVASGKGGTGKTTITANLGVALAQL-GHDVTIVD 37 (232)
T ss_dssp EEEESSSCSCHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred EEECCCCCChHHHHHHHHHHHHHhC-CCCEEEEe
Confidence 4455889999999999999999865 78999997
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=93.98 E-value=0.013 Score=48.68 Aligned_cols=33 Identities=24% Similarity=0.204 Sum_probs=24.5
Q ss_pred EEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCC
Q 026207 29 FLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTS 64 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~ 64 (241)
|.|-|+-|+||||+++.++..+.. ..+.++.++
T Consensus 7 I~IEG~iGsGKTTl~~~La~~l~~---~~v~~~~EP 39 (329)
T d1e2ka_ 7 VYIDGPHGMGKTTTTQLLVALGSR---DDIVYVPEP 39 (329)
T ss_dssp EEECSCTTSSHHHHHHHHTC-------CCEEEECCC
T ss_pred EEEECCcCCCHHHHHHHHHHHhCC---CCeEEeccc
Confidence 788999999999999999887653 356777655
|
| >d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.79 E-value=0.023 Score=43.68 Aligned_cols=34 Identities=32% Similarity=0.450 Sum_probs=29.0
Q ss_pred EEEEE-eCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 28 FFLSY-FRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 28 ~vll~-Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
+|.++ +.-|+||||+...++..++.. |.+|+.+|
T Consensus 4 vIav~~~kGGvGKTtia~nLA~~la~~-g~~VlliD 38 (237)
T d1g3qa_ 4 IISIVSGKGGTGKTTVTANLSVALGDR-GRKVLAVD 38 (237)
T ss_dssp EEEEECSSTTSSHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHHhC-CCCEEEEe
Confidence 45555 778999999999999999864 88999998
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=93.71 E-value=0.019 Score=44.23 Aligned_cols=23 Identities=22% Similarity=0.065 Sum_probs=20.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
.+.++|.+++|||||+.+|+...
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~~~ 27 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTYVA 27 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHHHh
Confidence 47899999999999999997543
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=93.69 E-value=0.016 Score=44.13 Aligned_cols=36 Identities=17% Similarity=0.123 Sum_probs=23.8
Q ss_pred EEEEEeCCCchHHHHH-HHHHHhccccCCCeEEEEcCCc
Q 026207 28 FFLSYFRPGVGKTTVM-REIARVLSDEFQKRVVIVDTSN 65 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl-~~l~~~l~~~~g~~v~~i~~~~ 65 (241)
.+++.+|+|+|||+.. ..++..+... .+++++....
T Consensus 42 ~~il~apTGsGKT~~a~l~i~~~~~~~--~~vl~l~P~~ 78 (202)
T d2p6ra3 42 NLLLAMPTAAGKTLLAEMAMVREAIKG--GKSLYVVPLR 78 (202)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHHHTT--CCEEEEESSH
T ss_pred CEEEEcCCCCchhHHHHHHHHHHhhcc--CcceeecccH
Confidence 5889999999999874 3344444333 5677776333
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=93.67 E-value=0.0099 Score=46.55 Aligned_cols=39 Identities=23% Similarity=0.267 Sum_probs=26.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEI 67 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~ 67 (241)
.+++.+|+|+|||+.....+-..... +.+++++....++
T Consensus 60 ~~~i~apTGsGKT~~~~~~~~~~~~~-~~rvliv~Pt~~L 98 (237)
T d1gkub1 60 SFAATAPTGVGKTSFGLAMSLFLALK-GKRCYVIFPTSLL 98 (237)
T ss_dssp CEECCCCBTSCSHHHHHHHHHHHHTT-SCCEEEEESCHHH
T ss_pred CEEEEecCCChHHHHHHHHHHHHHHh-cCeEEEEeccHHH
Confidence 58899999999998765544433323 5678888744444
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.58 E-value=0.015 Score=47.15 Aligned_cols=25 Identities=16% Similarity=0.012 Sum_probs=22.0
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
--+|.++||.++|||||++.+++..
T Consensus 32 v~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 32 MVVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEEECCCCCCHHHHHHHHcCCC
Confidence 3489999999999999999998754
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.58 E-value=0.034 Score=44.89 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=21.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
=++|+|++|+|||||+..++....
T Consensus 70 r~~If~~~g~GKt~l~~~i~~~~~ 93 (276)
T d2jdid3 70 KIGLFGGAGVGKTVLIMELINNVA 93 (276)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHH
Confidence 399999999999999999987753
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=93.57 E-value=0.016 Score=44.67 Aligned_cols=25 Identities=8% Similarity=0.068 Sum_probs=22.7
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
..++|.|||++|||+++.+|+..+.
T Consensus 54 n~i~~~GP~~TGKS~f~~sl~~~l~ 78 (205)
T d1tuea_ 54 NCLVFCGPANTGKSYFGMSFIHFIQ 78 (205)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred eEEEEECCCCccHHHHHHHHHHHhC
Confidence 4799999999999999999999874
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=93.57 E-value=0.019 Score=43.46 Aligned_cols=23 Identities=22% Similarity=0.096 Sum_probs=20.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
.+.++|...+|||||+..|++..
T Consensus 7 nIaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 7 NIGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEEeccCCcHHHHHHHHHhhh
Confidence 47999999999999999998754
|
| >d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Azotobacter vinelandii [TaxId: 354]
Probab=93.54 E-value=0.028 Score=45.11 Aligned_cols=33 Identities=30% Similarity=0.514 Sum_probs=29.0
Q ss_pred EEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 29 FLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
++|.|.=|+||||+.-.|+..++.. |++|+.||
T Consensus 5 IaisgKGGVGKTT~a~NLA~~LA~~-G~rVLlID 37 (289)
T d2afhe1 5 CAIYGKGGIGKSTTTQNLVAALAEM-GKKVMIVG 37 (289)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC-CCCEEEEe
Confidence 5679999999999999999988765 88999887
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=93.00 E-value=0.026 Score=45.81 Aligned_cols=27 Identities=15% Similarity=0.121 Sum_probs=22.8
Q ss_pred eeccEEEEEeCCCchHHHHHHHHHHhc
Q 026207 24 IIFDFFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 24 ~~~g~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
+.-+-++++|..++|||||+++|+|.-
T Consensus 22 ~~lP~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 22 LDLPQIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSC
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHhCCC
Confidence 334568999999999999999999854
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.28 E-value=0.032 Score=44.91 Aligned_cols=27 Identities=11% Similarity=0.051 Sum_probs=23.1
Q ss_pred eeccEEEEEeCCCchHHHHHHHHHHhc
Q 026207 24 IIFDFFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 24 ~~~g~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
+..+-++++|.-++|||||+++|+|.-
T Consensus 24 ~~~P~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 24 LDLPQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHhCCC
Confidence 445569999999999999999999853
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=92.26 E-value=0.23 Score=38.72 Aligned_cols=90 Identities=16% Similarity=0.107 Sum_probs=51.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCcE
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEV 107 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~v 107 (241)
..||.|.+|||||-.....+...-. .|+.++++- +.+.. ..+.. +.+-...-..+..+
T Consensus 78 ~~LL~GdvGsGKT~V~~~a~~~~~~-~g~qv~~l~-Pt~~L-----a~Q~~---------------~~~~~~~~~~~~~v 135 (233)
T d2eyqa3 78 DRLVCGDVGFGKTEVAMRAAFLAVD-NHKQVAVLV-PTTLL-----AQQHY---------------DNFRDRFANWPVRI 135 (233)
T ss_dssp EEEEECCCCTTTHHHHHHHHHHHHT-TTCEEEEEC-SSHHH-----HHHHH---------------HHHHHHSTTTTCCE
T ss_pred CeEEEcCCCCCcHHHHHHHHHHHHH-cCCceEEEc-cHHHh-----HHHHH---------------HHHHHHHhhCCCEE
Confidence 5899999999999987655554433 368888887 54441 11111 11111111234567
Q ss_pred EEEcCCCCHHhHHHHHHHHhCCc-EEEEeecCC
Q 026207 108 IIVDEIGTEAEAHACRSIAERGV-MLIGTAHGE 139 (241)
Q Consensus 108 lilDE~~~~~d~~~~~~~~~~g~-~vi~t~H~~ 139 (241)
-++-.-.+...-.........|. .+++-+|..
T Consensus 136 ~~l~~~~~~~~~~~~~~~~~~g~~~iviGths~ 168 (233)
T d2eyqa3 136 EMISRFRSAKEQTQILAEVAEGKIDILIGTHKL 168 (233)
T ss_dssp EEESTTSCHHHHHHHHHHHHTTCCSEEEECTHH
T ss_pred EeccCcccchhHHHHHHHHhCCCCCEEEeehhh
Confidence 77777666544444444444454 467666654
|
| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.90 E-value=0.056 Score=38.07 Aligned_cols=35 Identities=6% Similarity=-0.076 Sum_probs=26.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccc-cCCCeEEEEc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSD-EFQKRVVIVD 62 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~-~~g~~v~~i~ 62 (241)
.+.++|-+|+||+|+.++|...+.+ ..++++-.++
T Consensus 8 ~i~~tg~~~~gk~~ia~al~~~l~q~~G~R~vtll~ 43 (122)
T d1g8fa3 8 SIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFE 43 (122)
T ss_dssp EEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHhcCCcceEEec
Confidence 4788999999999999999877765 3345554444
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=91.86 E-value=0.042 Score=41.88 Aligned_cols=24 Identities=21% Similarity=0.145 Sum_probs=21.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
.++++|...+|||||+..|++...
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEEEccCCcHHHHHHHHHhhhc
Confidence 599999999999999999987554
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=91.54 E-value=0.048 Score=43.63 Aligned_cols=22 Identities=32% Similarity=0.377 Sum_probs=20.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHh
Q 026207 28 FFLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~ 49 (241)
-++++|-|.+|||||++.|.+.
T Consensus 114 ~v~vvG~PNvGKSsliN~L~~~ 135 (273)
T d1puja_ 114 RALIIGIPNVGKSTLINRLAKK 135 (273)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEEecCccchhhhhhhhhcc
Confidence 3899999999999999999984
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=91.49 E-value=0.23 Score=39.53 Aligned_cols=90 Identities=16% Similarity=0.049 Sum_probs=50.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCcE
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEV 107 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~v 107 (241)
..||.|..|||||-.....+...-.. |..++++- +.++. ..+ .++......-..+..+
T Consensus 106 ~rLL~GdvGSGKT~Va~~a~~~~~~~-g~q~~~m~-Pt~~L-----a~Q---------------h~~~~~~~f~~~~~~v 163 (264)
T d1gm5a3 106 NRLLQGDVGSGKTVVAQLAILDNYEA-GFQTAFMV-PTSIL-----AIQ---------------HYRRTVESFSKFNIHV 163 (264)
T ss_dssp CCEEECCSSSSHHHHHHHHHHHHHHH-TSCEEEEC-SCHHH-----HHH---------------HHHHHHHHHTCSSCCE
T ss_pred eeeeeccccccccHHHHHHHHHHHhc-ccceeEEe-ehHhh-----hHH---------------HHHHHHHhhhhccccc
Confidence 47999999999999876665544333 67888887 54442 111 1111222222234566
Q ss_pred EEEcCCCCHHhHHHHHHHHhCC-cEEEEeecCC
Q 026207 108 IIVDEIGTEAEAHACRSIAERG-VMLIGTAHGE 139 (241)
Q Consensus 108 lilDE~~~~~d~~~~~~~~~~g-~~vi~t~H~~ 139 (241)
.++-.-.+.-.-........+| ..+++.+|+.
T Consensus 164 ~~l~~~~~~~~r~~~~~~~~~g~~~iiIGThsl 196 (264)
T d1gm5a3 164 ALLIGATTPSEKEKIKSGLRNGQIDVVIGTHAL 196 (264)
T ss_dssp EECCSSSCHHHHHHHHHHHHSSCCCEEEECTTH
T ss_pred eeeccccchHHHHHHHHHHHCCCCCEEEeehHH
Confidence 6665444443334444444444 4477767765
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=91.45 E-value=0.05 Score=41.48 Aligned_cols=24 Identities=25% Similarity=0.224 Sum_probs=20.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
.+.++|...+|||||+..|.+.+.
T Consensus 5 ni~iiGHvd~GKSTL~~~l~~~~~ 28 (196)
T d1d2ea3 5 NVGTIGHVDHGKTTLTAAITKILA 28 (196)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHHHHH
Confidence 478999999999999999987543
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.10 E-value=0.56 Score=38.55 Aligned_cols=51 Identities=10% Similarity=0.087 Sum_probs=30.3
Q ss_pred HHHHHHHHhcCCcEEEEcCCCCH--HhHHHHHHHHhCCcEEEEeecCCChhhhhc
Q 026207 94 KVMIEAVENHMPEVIIVDEIGTE--AEAHACRSIAERGVMLIGTAHGEWLENIIK 146 (241)
Q Consensus 94 ~~~~~~~l~~~p~vlilDE~~~~--~d~~~~~~~~~~g~~vi~t~H~~~~~~~~~ 146 (241)
.....++...+--++++|-..+. .+......+...+..++..+ +++....+
T Consensus 111 ~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~~~~~p~i~vi--NKiDr~~~ 163 (341)
T d1n0ua2 111 SEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVI--NKVDRALL 163 (341)
T ss_dssp HHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEE--ECHHHHHH
T ss_pred HHHHHHHhhcCceEEEEecccCcchhHHHHHHHHHHcCCCeEEEE--ECcccccc
Confidence 34444445567789999977644 33345567777888755543 55444443
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=89.78 E-value=0.1 Score=40.40 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=19.7
Q ss_pred EEEEeCCCchHHHHHHHHHHhc
Q 026207 29 FLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~l 50 (241)
++++|...+|||||+..|+...
T Consensus 12 i~viGHVd~GKSTL~~~Ll~~~ 33 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLLHDS 33 (222)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEcCCCCCHHHHHHHHHHHc
Confidence 7889999999999999997654
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=89.15 E-value=0.088 Score=43.20 Aligned_cols=18 Identities=33% Similarity=0.301 Sum_probs=15.7
Q ss_pred ccEEEEEeCCCchHHHHH
Q 026207 26 FDFFLSYFRPGVGKTTVM 43 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl 43 (241)
.++.++.|.+|+|||||-
T Consensus 14 ~~valffGLSGTGKTTLs 31 (318)
T d1j3ba1 14 GDVAVFFGLSGTGKTTLS 31 (318)
T ss_dssp CCEEEEEECTTSCHHHHT
T ss_pred CCEEEEEccCCCCccccc
Confidence 358899999999999964
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=89.00 E-value=0.15 Score=40.96 Aligned_cols=32 Identities=22% Similarity=0.061 Sum_probs=23.6
Q ss_pred EEEEeCCCchHHHHHHHHHHhccccCCCeEEEE
Q 026207 29 FLSYFRPGVGKTTVMREIARVLSDEFQKRVVIV 61 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i 61 (241)
++|+|++|+|||+|+..++.....+ ...+++.
T Consensus 70 ~~Ifg~~g~GKt~l~~~~~~~~~~~-~~v~V~~ 101 (276)
T d1fx0a3 70 ELIIGDRQTGKTAVATDTILNQQGQ-NVICVYV 101 (276)
T ss_dssp CBEEESSSSSHHHHHHHHHHTCCTT-TCEEEEE
T ss_pred EeeccCCCCChHHHHHHHHhhhccc-Cceeeee
Confidence 8999999999999998876665444 2344443
|
| >d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU species: Salmonella typhimurium [TaxId: 90371]
Probab=87.87 E-value=0.19 Score=37.68 Aligned_cols=32 Identities=19% Similarity=0.162 Sum_probs=25.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCC
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTS 64 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~ 64 (241)
++||+|+..||||.+...++.. +.+++|+-+.
T Consensus 1 iiLVtGGarSGKS~~AE~l~~~-----~~~~~YiAT~ 32 (180)
T d1c9ka_ 1 MILVTGGARSGKSRHAEALIGD-----APQVLYIATS 32 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS-----CSSEEEEECC
T ss_pred CEEEECCCCccHHHHHHHHHhc-----CCCcEEEEcc
Confidence 4799999999999999887632 2467888744
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=87.80 E-value=0.12 Score=42.31 Aligned_cols=18 Identities=33% Similarity=0.301 Sum_probs=15.7
Q ss_pred ccEEEEEeCCCchHHHHH
Q 026207 26 FDFFLSYFRPGVGKTTVM 43 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl 43 (241)
.++.++.|.+|+|||||-
T Consensus 14 ~~~alfFGLSGTGKTTLs 31 (313)
T d2olra1 14 GDVAVFFGLSGTGKTTLS 31 (313)
T ss_dssp SCEEEEECSTTSSHHHHH
T ss_pred CCEEEEEccCCCCcccce
Confidence 357899999999999964
|
| >d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]
Probab=87.31 E-value=0.15 Score=46.18 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=21.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
.|+|+|++|||||+..+.++..+.
T Consensus 88 sIiisGeSGsGKTe~~k~il~yL~ 111 (684)
T d1lkxa_ 88 CVIISGESGAGKTEASKKIMQFLT 111 (684)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 699999999999999999877663
|
| >d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=86.99 E-value=0.16 Score=46.20 Aligned_cols=24 Identities=25% Similarity=0.319 Sum_probs=21.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
.++|+|++|||||...+.++..+.
T Consensus 127 sIiisGeSGaGKTe~~k~il~yL~ 150 (712)
T d1d0xa2 127 SLLITGESGAGKTENTKKVIQYLA 150 (712)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEeCCCCCCHHHHHHHHHHHHH
Confidence 799999999999999999987664
|
| >d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]
Probab=86.67 E-value=0.17 Score=46.00 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=21.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
.|+|+|.+|||||+..+.++..+.
T Consensus 93 ~IiisGeSGaGKTe~~k~il~yL~ 116 (710)
T d1br2a2 93 SILCTGESGAGKTENTKKVIQYLA 116 (710)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHH
Confidence 699999999999999999988763
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=86.64 E-value=0.19 Score=38.61 Aligned_cols=22 Identities=14% Similarity=0.083 Sum_probs=19.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHh
Q 026207 28 FFLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~ 49 (241)
.++++|.-++|||||+..|+..
T Consensus 5 Ni~viGHVd~GKTTL~~~Ll~~ 26 (224)
T d1jnya3 5 NLIVIGHVDHGKSTLVGRLLMD 26 (224)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEecCCCCHHHHHHHHHHH
Confidence 4789999999999999988643
|
| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=86.56 E-value=0.15 Score=41.75 Aligned_cols=18 Identities=33% Similarity=0.303 Sum_probs=16.0
Q ss_pred ccEEEEEeCCCchHHHHH
Q 026207 26 FDFFLSYFRPGVGKTTVM 43 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl 43 (241)
.++.++.|-+|+|||||-
T Consensus 14 gd~alfFGLSGTGKTTLs 31 (323)
T d1ii2a1 14 GDVTVFFGLSGTGKTTLS 31 (323)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CCEEEEEccCCCCcccce
Confidence 457899999999999986
|
| >d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]
Probab=86.34 E-value=0.19 Score=46.30 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=21.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
.|+|+|++|||||+..+.++..+.
T Consensus 125 sIiisGeSGaGKTe~~K~il~yL~ 148 (794)
T d2mysa2 125 SILITGESGAGKTVNTKRVIQYFA 148 (794)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 699999999999999988887663
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.51 E-value=0.41 Score=39.38 Aligned_cols=38 Identities=8% Similarity=0.124 Sum_probs=27.3
Q ss_pred cCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCC
Q 026207 103 HMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 103 ~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~ 140 (241)
..+.++++|||.+.+|+.... .....+..+|+++|...
T Consensus 353 ~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~ 397 (427)
T d1w1wa_ 353 QPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNT 397 (427)
T ss_dssp SCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHH
Confidence 455799999999999985332 22234567999999874
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.42 E-value=0.21 Score=40.29 Aligned_cols=22 Identities=18% Similarity=-0.011 Sum_probs=19.6
Q ss_pred EEEEeCCCchHHHHHHHHHHhc
Q 026207 29 FLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~l 50 (241)
++|.|++|+|||+++..++...
T Consensus 71 ~~If~~~g~GKt~ll~~~~~~~ 92 (285)
T d2jdia3 71 ELIIGDRQTGKTSIAIDTIINQ 92 (285)
T ss_dssp CEEEESTTSSHHHHHHHHHHHT
T ss_pred EEeecCCCCChHHHHHHHHHhH
Confidence 8999999999999998887664
|
| >d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Bay scallop (Aequipecten irradians) [TaxId: 31199]
Probab=84.81 E-value=0.24 Score=45.58 Aligned_cols=24 Identities=25% Similarity=0.236 Sum_probs=21.1
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
.|+|+|++|||||...+.++..+.
T Consensus 123 ~IiisGESGaGKTe~~K~il~yL~ 146 (789)
T d1kk8a2 123 SCLITGESGAGKTENTKKVIMYLA 146 (789)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHH
Confidence 799999999999999888877664
|
| >d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V beta chain (RecB), N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=84.74 E-value=0.18 Score=42.34 Aligned_cols=28 Identities=25% Similarity=0.124 Sum_probs=21.0
Q ss_pred eeeccEEEEEeCCCchHHHHH-HHHHHhc
Q 026207 23 KIIFDFFLSYFRPGVGKTTVM-REIARVL 50 (241)
Q Consensus 23 ~~~~g~vll~Gp~GsGKTTLl-~~l~~~l 50 (241)
.-..|.++|.+..|||||++| ..++.++
T Consensus 13 ~p~~g~~lv~A~AGsGKT~~l~~r~~~ll 41 (485)
T d1w36b1 13 LPLQGERLIEASAGTGKTFTIAALYLRLL 41 (485)
T ss_dssp CCCSSCEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCCCeEEEEcCchHHHHHHHHHHHHHH
Confidence 345678999999999999876 3344444
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| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=84.67 E-value=0.78 Score=36.08 Aligned_cols=40 Identities=13% Similarity=0.180 Sum_probs=29.6
Q ss_pred HhcCCcEEEEcCCCCHHhHHHHH------HHHhCCcEEEEeecCCC
Q 026207 101 ENHMPEVIIVDEIGTEAEAHACR------SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 101 l~~~p~vlilDE~~~~~d~~~~~------~~~~~g~~vi~t~H~~~ 140 (241)
....+.++++|||-..+++.... .....+..+|+|+|...
T Consensus 238 ~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~ 283 (308)
T d1e69a_ 238 EIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKI 283 (308)
T ss_dssp TTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTT
T ss_pred hhccCchhhhhhccccCCHHHHHHHHHHHHHhccCCEEEEEECCHH
Confidence 34567899999999998885433 11234678999999986
|
| >d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]
Probab=84.38 E-value=0.26 Score=44.93 Aligned_cols=24 Identities=21% Similarity=0.227 Sum_probs=21.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
.++|+|++|||||+..+.++..+.
T Consensus 96 ~IiisGeSGsGKTe~~k~il~~l~ 119 (730)
T d1w7ja2 96 SIIVSGESGAGKTVSAKYAMRYFA 119 (730)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHH
Confidence 699999999999999999988663
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| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=83.51 E-value=0.29 Score=38.25 Aligned_cols=23 Identities=17% Similarity=0.033 Sum_probs=19.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
.+.++|..++|||||+..|+...
T Consensus 26 Ni~iiGHVD~GKSTL~~~Ll~~~ 48 (245)
T d1r5ba3 26 NIVFIGHVDAGKSTLGGNILFLT 48 (245)
T ss_dssp EEEEEECGGGTHHHHHHHHHHHT
T ss_pred EEEEEeeCCCCHHHHHHHHHHHc
Confidence 48889999999999999985433
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.18 E-value=0.35 Score=37.68 Aligned_cols=22 Identities=14% Similarity=0.016 Sum_probs=19.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHh
Q 026207 28 FFLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~ 49 (241)
.+.++|..++|||||+..|+..
T Consensus 8 Ni~iiGHvD~GKsTl~~~ll~~ 29 (239)
T d1f60a3 8 NVVVIGHVDSGKSTTTGHLIYK 29 (239)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 6889999999999999888643
|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: DNA helicase UvsW domain: DNA helicase UvsW species: Bacteriophage T4 [TaxId: 10665]
Probab=81.06 E-value=0.38 Score=38.38 Aligned_cols=40 Identities=10% Similarity=0.297 Sum_probs=28.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEI 67 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~ 67 (241)
-.++.-|+|+|||-++..++..+......+++++-...++
T Consensus 130 ~~il~~pTGsGKT~i~~~i~~~~~~~~~~k~Liivp~~~L 169 (282)
T d1rifa_ 130 RRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTAL 169 (282)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHH
T ss_pred CceeEEEcccCccHHHHHHHHHhhhcccceEEEEEcCchh
Confidence 4677789999999888777765544434577777644433
|