Citrus Sinensis ID: 026285

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240
Protein Sequence
MAFASRLASKSKQLCSSQVILQRQHAISVRFFANEAAPQALKGDEMLKNIFLDVKKKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTYLLTLKEIRERRGLIDEHGAEAMMMDALEKVEKEIKKPLMRNDKKGMALLTAEFDKINKKLGIRKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKREEFKDEEMVEVKSLDVRNFL
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccEcccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEccHHHcc
Coil and Loop (DISEMBL)
MAFASRLASKSKQLCSSQVILQRQHAISVRffaneaapqalkgDEMLKNIFLDVKKKFETALGVLrkekitiapedpaavSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTYLLTLKEIRERRGLIDEHGAEAMMMDALEKVEKEIKKPLMRNDKKGMALLTAEFDKINKklgirkedlPKYEEQLELKIAKAQLEELKKDALEAMETQKKREEFKDEEMVEVKSLDVRNFL
Flexible Loop (DISEMBL)
mafasrlaskskqlcSSQVILQRQHAISVRFFANEAAPQALKGDEMLKNIFLDVKKKFETALGVlrkekitiapedpaavsQYANVMKTVREKADLFSESQRIAYtietrtagipdarTYLLTLKEIRERRGLIDEHGAEAMMMDALEKVEKEIKKPLMRNDKKGMALLTAEFDkinkklgirkedlPKYEEQLELKIAKAQLEELKKDALEAMETQkkreefkdeemvevksldvrnfl
Low Complexity Region (SEG)
MAFASRLASKSKQLCSSQVILQRQHAISVRFFANEAAPQALKGDEMLKNIFLDVKKKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTYLLTLKEIRERRGLIDEHGAEAMMMDALEKVEKEIKKPLMRNDKKGMALLTAEFDKINKKLGIRKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKREEFKDEEMVEVKSLDVRNFL
Disordered region (IsUnstruct)
**************CSSQVILQRQHAISVRFFANEAAPQALKGDEMLKNIFLDVKKKFETALGVLR****************************DLFSESQRIAYTIETRTAGIPDARTYLLTLKEIRERRGLIDE******************************ALLTAEFDKINKKLGI**********************************************************
Disordered Region (DISOPRED)
************QLCSSQVILQRQHAISV*******************NIFLDVKKKFETALGVLRKEKI*IAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTYLLTL***************EAMMMDALEKVEKEIKKPLMRNDKKGMALLTAEFDKINKKLGIRKEDLPKYEEQLELKIAKAQLEEL********************EMVEVKSLDVRNFL
Disordered Region (DISEMBL)
*****************QVILQRQHAISVRFFANEAAPQALKGDEMLKNIFLDVKKKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTYLLTLKEIRERRGLIDEHGAEAMMMDALEKVEKEIKKPLMRNDKKGMALLTAEFDKINKKLGIRKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKREEFKDEEMVEVKSLDVRNFL
Disordered Region (DISPRO)
******LASKSKQLCSSQVILQRQHAISVRFFANEAAPQALKGDEMLKNIFLDVKKKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTYLLTLKEIRERRGLIDEHGAEAMMMDALEKVEKEIKKPLMRNDKKGMALLTAEFDKINKKLGIRKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKREEFKDEEMVEVKSLDV**FL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAFASRLASKSKQLCSSQVILQRQHAISVRFFANEAAPQALKGDEMLKNIFLDVKKKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTYLLTLKEIRERRGLIDEHGAEAMMMDALEKVEKEIKKPLMRNDKKGMALLTAEFDKINKKLGIRKEDLPxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxEEFKDEEMVEVKSLDVRNFL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	240	2.2.26 [Sep-21-2011]
Q9SJ12	240	Probable ATP synthase 24	yes	no	1.0	1.0	0.720	2e-95
P80088	32	ATP synthase 28 kDa subun	N/A	no	0.104	0.781	0.8	0.0005

>sp|Q9SJ12|ATP7_ARATH Probable ATP synthase 24 kDa subunit, mitochondrial OS=Arabidopsis thaliana GN=At2g21870 PE=1 SV=1

 Score =  348 bits (894), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 173/240 (72%), Positives = 202/240 (84%)

Query: 1   MAFASRLASKSKQLCSSQVILQRQHAISVRFFANEAAPQALKGDEMLKNIFLDVKKKFET 60
           MA+ASR  S+SKQL    VILQ+QHAI VR FA EAA    KGDEMLK +F D+K KF+ 
Sbjct: 1   MAYASRFLSRSKQLQGGLVILQQQHAIPVRAFAKEAARPTFKGDEMLKGVFFDIKNKFQA 60

Query: 61  ALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTY 120
           A+ +LRKEKIT+ PEDPAAV QYANVMKT+R+KAD+FSESQRI + I+T T  IPDAR Y
Sbjct: 61  AVDILRKEKITLDPEDPAAVKQYANVMKTIRQKADMFSESQRIKHDIDTETQDIPDARAY 120

Query: 121 LLTLKEIRERRGLIDEHGAEAMMMDALEKVEKEIKKPLMRNDKKGMALLTAEFDKINKKL 180
           LL L+EIR RRGL DE GAEAMM +ALEKVEK+IKKPL+R+DKKGM LL AEF+K NKKL
Sbjct: 121 LLKLQEIRTRRGLTDELGAEAMMFEALEKVEKDIKKPLLRSDKKGMDLLVAEFEKGNKKL 180

Query: 181 GIRKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKREEFKDEEMVEVKSLDVRNFL 240
           GIRKEDLPKYEE LEL +AKAQL+ELK DA+EAME+QKK+EEF+DEEM +VKSLD+RNF+
Sbjct: 181 GIRKEDLPKYEENLELSMAKAQLDELKSDAVEAMESQKKKEEFQDEEMPDVKSLDIRNFI 240

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain.
Arabidopsis thaliana (taxid: 3702)

>sp|P80088|ATP7_SPIOL ATP synthase 28 kDa subunit, mitochondrial (Fragment) OS=Spinacia oleracea PE=1 SV=1

 Score = 44.7 bits (104), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 20/25 (80%), Positives = 23/25 (92%)

Query: 37 APQALKGDEMLKNIFLDVKKKFETA 61
          AP+ LKG+EMLK IFL+VKKKFETA
Sbjct: 8  APKGLKGNEMLKGIFLEVKKKFETA 32

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain.

Spinacia oleracea (taxid: 3562)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	240
225438529	240	PREDICTED: probable ATP synthase 24 kDa	1.0	1.0	0.875	1e-116
147819925	240	hypothetical protein VITISV_031883 [Viti	1.0	1.0	0.866	1e-115
255582813	243	conserved hypothetical protein [Ricinus	1.0	0.987	0.814	1e-105
449448424	240	PREDICTED: probable ATP synthase 24 kDa	1.0	1.0	0.795	1e-103
449515821	240	PREDICTED: probable ATP synthase 24 kDa	1.0	1.0	0.791	1e-103
224093896	240	predicted protein [Populus trichocarpa]	1.0	1.0	0.766	1e-101
118484162	240	unknown [Populus trichocarpa]	1.0	1.0	0.766	1e-101
388499758	241	unknown [Lotus japonicus]	1.0	0.995	0.771	1e-100
356512762	241	PREDICTED: probable ATP synthase 24 kDa	1.0	0.995	0.771	1e-100
255645559	241	unknown [Glycine max]	1.0	0.995	0.767	3e-99

>gi|225438529|ref|XP_002279389.1| PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial [Vitis vinifera] gi|296082520|emb|CBI21525.3| unnamed protein product [Vitis vinifera]

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 210/240 (87%), Positives = 225/240 (93%)

Query: 1   MAFASRLASKSKQLCSSQVILQRQHAISVRFFANEAAPQALKGDEMLKNIFLDVKKKFET 60
           MAF+SRL SKSKQL  SQ+ILQ+QHA+ VRFFA EAAP ALKGDEMLKNIFL+VKKKFET
Sbjct: 1   MAFSSRLLSKSKQLYGSQIILQQQHAVPVRFFAKEAAPPALKGDEMLKNIFLEVKKKFET 60

Query: 61  ALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTY 120
           A+GVLRKEKITI PEDPAAV+QYA VMKTVREKADLFSESQRI YTI+TRT GIPDARTY
Sbjct: 61  AMGVLRKEKITIDPEDPAAVNQYAKVMKTVREKADLFSESQRIQYTIQTRTQGIPDARTY 120

Query: 121 LLTLKEIRERRGLIDEHGAEAMMMDALEKVEKEIKKPLMRNDKKGMALLTAEFDKINKKL 180
           LLTLKEIR +RGL DE GAEAMMMDALEKVEKE+KKPLMRNDKKGMALL AEFDK+NKKL
Sbjct: 121 LLTLKEIRIKRGLTDELGAEAMMMDALEKVEKELKKPLMRNDKKGMALLMAEFDKVNKKL 180

Query: 181 GIRKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKREEFKDEEMVEVKSLDVRNFL 240
           G+RKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKREEFKDE MV+VKSLD+RNF+
Sbjct: 181 GVRKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKREEFKDEAMVDVKSLDIRNFI 240

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147819925|emb|CAN62814.1| hypothetical protein VITISV_031883 [Vitis vinifera]

 Score =  419 bits (1076), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 208/240 (86%), Positives = 223/240 (92%)

Query: 1   MAFASRLASKSKQLCSSQVILQRQHAISVRFFANEAAPQALKGDEMLKNIFLDVKKKFET 60
           MAF+SRL SKSKQL  SQ+ILQ+QHA+ VRFFA EAAP ALKGDEMLKNIFL+VKKKFET
Sbjct: 1   MAFSSRLLSKSKQLYGSQIILQQQHAVPVRFFAKEAAPPALKGDEMLKNIFLEVKKKFET 60

Query: 61  ALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTY 120
           A+GVLRKEKITI PEDPAAV+QYA VMKTVREKADLFSESQRI YTI+TRT GIPDARTY
Sbjct: 61  AMGVLRKEKITIDPEDPAAVNQYAKVMKTVREKADLFSESQRIQYTIQTRTQGIPDARTY 120

Query: 121 LLTLKEIRERRGLIDEHGAEAMMMDALEKVEKEIKKPLMRNDKKGMALLTAEFDKINKKL 180
           LLTLKEIR +RGL DE GAEAMMMDALEKVEKE+KKPLMRNDKKGMALL AEFDK+NKKL
Sbjct: 121 LLTLKEIRIKRGLTDELGAEAMMMDALEKVEKELKKPLMRNDKKGMALLMAEFDKVNKKL 180

Query: 181 GIRKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKREEFKDEEMVEVKSLDVRNFL 240
           G+RKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKR  FKDE MV+VKSLD+RNF+
Sbjct: 181 GVRKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKRRNFKDEAMVDVKSLDIRNFI 240

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582813|ref|XP_002532180.1| conserved hypothetical protein [Ricinus communis] gi|223528128|gb|EEF30198.1| conserved hypothetical protein [Ricinus communis]

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 198/243 (81%), Positives = 219/243 (90%), Gaps = 3/243 (1%)

Query: 1   MAFASRLASKSKQLCSSQVILQRQH-AISVRFFANEAAPQA--LKGDEMLKNIFLDVKKK 57
           MAF+SRL S+SKQ+  ++VI+Q+Q   I VR+FA +A      LKGDEMLKN+FLDVK+K
Sbjct: 1   MAFSSRLLSRSKQVYGNRVIMQQQELVIPVRYFAKKADAAPPALKGDEMLKNVFLDVKRK 60

Query: 58  FETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDA 117
           FETA+G+LRKEKITIAPEDPAAVSQYA VMKT+REKADLFSESQRI YTIETRT  IPDA
Sbjct: 61  FETAIGILRKEKITIAPEDPAAVSQYAKVMKTIREKADLFSESQRIKYTIETRTKDIPDA 120

Query: 118 RTYLLTLKEIRERRGLIDEHGAEAMMMDALEKVEKEIKKPLMRNDKKGMALLTAEFDKIN 177
           RTYLLTL+EIR +RGL DE GAEAMMMDALEKVE E+KKPLMRNDKKGMALLTAEFDKIN
Sbjct: 121 RTYLLTLREIRIKRGLTDELGAEAMMMDALEKVENELKKPLMRNDKKGMALLTAEFDKIN 180

Query: 178 KKLGIRKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKREEFKDEEMVEVKSLDVR 237
           KKLGIRKEDLPKYEE LELKIAKAQLEELKKDALEAM+TQKKREEFKDEEM +VKSLD+R
Sbjct: 181 KKLGIRKEDLPKYEEDLELKIAKAQLEELKKDALEAMDTQKKREEFKDEEMADVKSLDIR 240

Query: 238 NFL 240
           NF+
Sbjct: 241 NFI 243

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448424|ref|XP_004141966.1| PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial-like [Cucumis sativus]

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 191/240 (79%), Positives = 212/240 (88%)

Query: 1   MAFASRLASKSKQLCSSQVILQRQHAISVRFFANEAAPQALKGDEMLKNIFLDVKKKFET 60
           MA +SRL SKSKQ+  SQ IL + HA  VR FA EAAP ALKGDEMLKNIFL+VKKKFET
Sbjct: 1   MALSSRLLSKSKQVLGSQSILHQGHAFPVRHFAKEAAPPALKGDEMLKNIFLEVKKKFET 60

Query: 61  ALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTY 120
           AL V +KEKITI P+DPAAV+QYA VMK  REKADLFSESQRI YTI+TRT  IPDAR+Y
Sbjct: 61  ALAVFKKEKITIDPDDPAAVAQYAKVMKLAREKADLFSESQRIKYTIQTRTQDIPDARSY 120

Query: 121 LLTLKEIRERRGLIDEHGAEAMMMDALEKVEKEIKKPLMRNDKKGMALLTAEFDKINKKL 180
           LL LKEIR +RGL D+ GAEAMM DALEKVEKE+KKPL+RNDKKGM++L AEFDKIN+KL
Sbjct: 121 LLALKEIRIKRGLSDDLGAEAMMFDALEKVEKELKKPLLRNDKKGMSVLMAEFDKINQKL 180

Query: 181 GIRKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKREEFKDEEMVEVKSLDVRNFL 240
           GIR+EDLPKYEEQLELKI+KAQLEE+KKDALEAMETQKKREEFKD+EMV+ KSLDVRNFL
Sbjct: 181 GIRREDLPKYEEQLELKISKAQLEEMKKDALEAMETQKKREEFKDDEMVDTKSLDVRNFL 240

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449515821|ref|XP_004164946.1| PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial-like [Cucumis sativus]

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 190/240 (79%), Positives = 211/240 (87%)

Query: 1   MAFASRLASKSKQLCSSQVILQRQHAISVRFFANEAAPQALKGDEMLKNIFLDVKKKFET 60
           MA +SRL SKSKQ+  SQ IL + H   VR FA EAAP ALKGDEMLKNIFL+VKKKFET
Sbjct: 1   MALSSRLLSKSKQVLGSQSILHQGHVFPVRHFAKEAAPPALKGDEMLKNIFLEVKKKFET 60

Query: 61  ALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTY 120
           AL V +KEKITI P+DPAAV+QYA VMK  REKADLFSESQRI YTI+TRT  IPDAR+Y
Sbjct: 61  ALAVFKKEKITIDPDDPAAVAQYAKVMKLAREKADLFSESQRIKYTIQTRTQDIPDARSY 120

Query: 121 LLTLKEIRERRGLIDEHGAEAMMMDALEKVEKEIKKPLMRNDKKGMALLTAEFDKINKKL 180
           LL LKEIR +RGL D+ GAEAMM DALEKVEKE+KKPL+RNDKKGM++L AEFDKIN+KL
Sbjct: 121 LLALKEIRIKRGLSDDLGAEAMMFDALEKVEKELKKPLLRNDKKGMSVLMAEFDKINQKL 180

Query: 181 GIRKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKREEFKDEEMVEVKSLDVRNFL 240
           GIR+EDLPKYEEQLELKI+KAQLEE+KKDALEAMETQKKREEFKD+EMV+ KSLDVRNFL
Sbjct: 181 GIRREDLPKYEEQLELKISKAQLEEMKKDALEAMETQKKREEFKDDEMVDTKSLDVRNFL 240

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224093896|ref|XP_002310038.1| predicted protein [Populus trichocarpa] gi|222852941|gb|EEE90488.1| predicted protein [Populus trichocarpa]

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 184/240 (76%), Positives = 211/240 (87%)

Query: 1   MAFASRLASKSKQLCSSQVILQRQHAISVRFFANEAAPQALKGDEMLKNIFLDVKKKFET 60
           MAF+SRL S+SKQL  SQ IL +QHA  VR++A EAAP  LKGDEMLK+IF D+K+KFET
Sbjct: 1   MAFSSRLLSRSKQLYGSQAILNQQHAFPVRYYAKEAAPAGLKGDEMLKDIFRDIKQKFET 60

Query: 61  ALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTY 120
           A+GVLRKEKITI PE+PAAVS YA VMKT+REKA LFSESQRI +TIE  T  IPDART+
Sbjct: 61  AIGVLRKEKITIDPENPAAVSHYAKVMKTIREKAGLFSESQRIQFTIEEETQDIPDARTF 120

Query: 121 LLTLKEIRERRGLIDEHGAEAMMMDALEKVEKEIKKPLMRNDKKGMALLTAEFDKINKKL 180
            L L+EIR +RGL DE G EAM MDALEKVEKEIK+PLMRNDKKGMALL AEFDK+NKKL
Sbjct: 121 FLKLQEIRTKRGLSDELGVEAMTMDALEKVEKEIKQPLMRNDKKGMALLMAEFDKVNKKL 180

Query: 181 GIRKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKREEFKDEEMVEVKSLDVRNFL 240
           G+R+EDLPKYEE+LELKIAKAQLEELKKDA+EAMETQ+KREEFK+E+ V+V+SLD+RNFL
Sbjct: 181 GVRREDLPKYEEELELKIAKAQLEELKKDAVEAMETQRKREEFKNEKEVDVRSLDIRNFL 240

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118484162|gb|ABK93963.1| unknown [Populus trichocarpa]

 Score =  372 bits (955), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 184/240 (76%), Positives = 210/240 (87%)

Query: 1   MAFASRLASKSKQLCSSQVILQRQHAISVRFFANEAAPQALKGDEMLKNIFLDVKKKFET 60
           MAF+SRL S+SKQL  SQ IL +QHA  VR++A EAAP  LKGDEMLK+IF D+K+KFET
Sbjct: 1   MAFSSRLLSRSKQLYGSQAILNQQHAFPVRYYAKEAAPAGLKGDEMLKDIFRDIKQKFET 60

Query: 61  ALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTY 120
           A+GVLRKEKITI PE+PAAVS YA VMKT+REKA LFSESQRI +TIE  T  IPDART+
Sbjct: 61  AIGVLRKEKITIDPENPAAVSHYAKVMKTIREKAGLFSESQRIQFTIEEETQDIPDARTF 120

Query: 121 LLTLKEIRERRGLIDEHGAEAMMMDALEKVEKEIKKPLMRNDKKGMALLTAEFDKINKKL 180
            L L EIR +RGL DE G EAM MDALEKVEKEIK+PLMRNDKKGMALL AEFDK+NKKL
Sbjct: 121 FLKLGEIRTKRGLSDELGVEAMTMDALEKVEKEIKQPLMRNDKKGMALLMAEFDKVNKKL 180

Query: 181 GIRKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKREEFKDEEMVEVKSLDVRNFL 240
           G+R+EDLPKYEE+LELKIAKAQLEELKKDA+EAMETQ+KREEFK+E+ V+V+SLD+RNFL
Sbjct: 181 GVRREDLPKYEEELELKIAKAQLEELKKDAVEAMETQRKREEFKNEKEVDVRSLDIRNFL 240

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388499758|gb|AFK37945.1| unknown [Lotus japonicus]

 Score =  369 bits (947), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 186/241 (77%), Positives = 213/241 (88%), Gaps = 1/241 (0%)

Query: 1   MAFASRLASKSKQLCSSQVILQRQHAISVRFFANEAAPQALKGDEMLKNIFLDVKKKFET 60
           MA  +RL SKSK    SQV+LQ+++A+ VR FA E+AP ALKGDEMLKN+F++VK KFET
Sbjct: 1   MALRARLFSKSKLAYGSQVLLQKEYAVPVRHFAKESAPPALKGDEMLKNVFVEVKSKFET 60

Query: 61  ALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTY 120
           ALG+L+KEKITIAPEDPAAVS Y NVMKTVREKA+L SESQ I  TIET T  IPDARTY
Sbjct: 61  ALGILKKEKITIAPEDPAAVSHYTNVMKTVREKANLLSESQDILATIETETQDIPDARTY 120

Query: 121 LLTLKEIRERRGLIDEHGAEAMMMDALEKVEKEIKKPLMRNDKKGMALLTAEFDKINKKL 180
           LLTLKEIR ++GL+D+ GAEAMM+DAL+KVEKE+KKPL+RNDKKGM LL AEFDKINK+L
Sbjct: 121 LLTLKEIRTKKGLLDDLGAEAMMIDALDKVEKELKKPLLRNDKKGMDLLLAEFDKINKQL 180

Query: 181 GIRKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKREEFKDE-EMVEVKSLDVRNF 239
           GIRKEDLPKYEEQLELK+AKAQLEELKKD +EAMETQKKREEFKDE E V+VK+LD+RNF
Sbjct: 181 GIRKEDLPKYEEQLELKLAKAQLEELKKDVVEAMETQKKREEFKDEREAVDVKTLDIRNF 240

Query: 240 L 240
           L
Sbjct: 241 L 241

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512762|ref|XP_003525085.1| PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial-like [Glycine max]

 Score =  369 bits (946), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 186/241 (77%), Positives = 212/241 (87%), Gaps = 1/241 (0%)

Query: 1   MAFASRLASKSKQLCSSQVILQRQHAISVRFFANEAAPQALKGDEMLKNIFLDVKKKFET 60
           MA +SRL SKSK +  SQ++LQ++HAI VR FA E+AP ALKGDEMLKNIF++VK KFET
Sbjct: 1   MALSSRLFSKSKLIYGSQILLQKEHAIPVRHFAKESAPPALKGDEMLKNIFVEVKNKFET 60

Query: 61  ALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTY 120
           A+G+L+KEKITI PEDPAAVS YA VMKT+REKA L SESQ I  TIE  T  IPDARTY
Sbjct: 61  AIGILKKEKITIDPEDPAAVSHYAKVMKTIREKASLLSESQDILSTIEIETQDIPDARTY 120

Query: 121 LLTLKEIRERRGLIDEHGAEAMMMDALEKVEKEIKKPLMRNDKKGMALLTAEFDKINKKL 180
           LLTLKEIR +RGL D+ GAEA+M+DAL+KVEK++KKPL+RNDKKGM LL AEFDKINKKL
Sbjct: 121 LLTLKEIRVKRGLTDDLGAEALMIDALDKVEKDLKKPLLRNDKKGMDLLLAEFDKINKKL 180

Query: 181 GIRKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKREEFKDE-EMVEVKSLDVRNF 239
           GIRKEDLPKYEE+LELK+AKAQLEELKKDALEAMETQKKREEFKDE E V+VK+LD+RNF
Sbjct: 181 GIRKEDLPKYEEELELKVAKAQLEELKKDALEAMETQKKREEFKDEPESVDVKTLDIRNF 240

Query: 240 L 240
           L
Sbjct: 241 L 241

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255645559|gb|ACU23274.1| unknown [Glycine max]

 Score =  367 bits (942), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 185/241 (76%), Positives = 211/241 (87%), Gaps = 1/241 (0%)

Query: 1   MAFASRLASKSKQLCSSQVILQRQHAISVRFFANEAAPQALKGDEMLKNIFLDVKKKFET 60
           MA +SRL SKSK +  SQ++LQ++HAI VR FA E+AP ALKGDEMLKNIF++VK KFET
Sbjct: 1   MALSSRLFSKSKLIYGSQILLQKEHAIPVRHFAKESAPPALKGDEMLKNIFVEVKNKFET 60

Query: 61  ALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTY 120
           A+G+L+KEKITI PEDPAAVS YA VMKT+REKA L SESQ I  TIE  T  IPDARTY
Sbjct: 61  AIGILKKEKITIDPEDPAAVSHYAKVMKTIREKASLLSESQDILSTIEIETQDIPDARTY 120

Query: 121 LLTLKEIRERRGLIDEHGAEAMMMDALEKVEKEIKKPLMRNDKKGMALLTAEFDKINKKL 180
           LLTLKEIR +RGL D+ GAEA+M+DAL+KVEK++KKPL+RNDKKGM L  AEFDKINKKL
Sbjct: 121 LLTLKEIRVKRGLTDDLGAEALMIDALDKVEKDLKKPLLRNDKKGMDLFLAEFDKINKKL 180

Query: 181 GIRKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKREEFKDE-EMVEVKSLDVRNF 239
           GIRKEDLPKYEE+LELK+AKAQLEELKKDALEAMETQKKREEFKDE E V+VK+LD+RNF
Sbjct: 181 GIRKEDLPKYEEELELKVAKAQLEELKKDALEAMETQKKREEFKDEPESVDVKTLDIRNF 240

Query: 240 L 240
           L
Sbjct: 241 L 241

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	240
TAIR|locus:2052464	240	MGP1 "MALE GAMETOPHYTE DEFECTI	1.0	1.0	0.720	2.3e-87
UNIPROTKB|Q7DM06	64	Q7DM06 "Putative ATP synthase	0.25	0.937	0.733	5.7e-20
UNIPROTKB|P42639	284	TPM1 "Tropomyosin alpha-1 chai	0.866	0.732	0.274	0.00015
WB|WBGene00001328	3704	epi-1 [Caenorhabditis elegans	0.870	0.056	0.242	0.00053
UNIPROTKB|J3QTA2	345	BAG1 "BAG family molecular cha	0.866	0.602	0.241	0.00066
UNIPROTKB|Q99933	345	BAG1 "BAG family molecular cha	0.866	0.602	0.241	0.00066

TAIR|locus:2052464 MGP1 "MALE GAMETOPHYTE DEFECTIVE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 873 (312.4 bits), Expect = 2.3e-87, P = 2.3e-87
 Identities = 173/240 (72%), Positives = 202/240 (84%)

Query:     1 MAFASRLASKSKQLCSSQVILQRQHAISVRFFANEAAPQALKGDEMLKNIFLDVKKKFET 60
             MA+ASR  S+SKQL    VILQ+QHAI VR FA EAA    KGDEMLK +F D+K KF+ 
Sbjct:     1 MAYASRFLSRSKQLQGGLVILQQQHAIPVRAFAKEAARPTFKGDEMLKGVFFDIKNKFQA 60

Query:    61 ALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTY 120
             A+ +LRKEKIT+ PEDPAAV QYANVMKT+R+KAD+FSESQRI + I+T T  IPDAR Y
Sbjct:    61 AVDILRKEKITLDPEDPAAVKQYANVMKTIRQKADMFSESQRIKHDIDTETQDIPDARAY 120

Query:   121 LLTLKEIRERRGLIDEHGAEAMMMDALEKVEKEIKKPLMRNDKKGMALLTAEFDKINKKL 180
             LL L+EIR RRGL DE GAEAMM +ALEKVEK+IKKPL+R+DKKGM LL AEF+K NKKL
Sbjct:   121 LLKLQEIRTRRGLTDELGAEAMMFEALEKVEKDIKKPLLRSDKKGMDLLVAEFEKGNKKL 180

Query:   181 GIRKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKREEFKDEEMVEVKSLDVRNFL 240
             GIRKEDLPKYEE LEL +AKAQL+ELK DA+EAME+QKK+EEF+DEEM +VKSLD+RNF+
Sbjct:   181 GIRKEDLPKYEENLELSMAKAQLDELKSDAVEAMESQKKKEEFQDEEMPDVKSLDIRNFI 240

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005507 "copper ion binding" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0050897 "cobalt ion binding" evidence=IDA

GO:0009555 "pollen development" evidence=IMP

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

UNIPROTKB|Q7DM06 Q7DM06 "Putative ATP synthase subunit" [Glycine max (taxid:3847)]

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 44/60 (73%), Positives = 54/60 (90%)

Query:    18 QVILQRQHAISVRFFANEAAPQALKGDEMLKNIFLDVKKKFETALGVLRKEKITIAPEDP 77
             Q++LQ++HAI VR FA E+AP ALKGDEMLKNIF++VK KFETA+G+L+KEKITI PEDP
Sbjct:     5 QILLQKEHAIPVRHFAKESAPPALKGDEMLKNIFVEVKNKFETAIGILKKEKITIDPEDP 64

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|P42639 TPM1 "Tropomyosin alpha-1 chain" [Sus scrofa (taxid:9823)]

 Score = 115 (45.5 bits), Expect = 0.00015, P = 0.00015
 Identities = 61/222 (27%), Positives = 109/222 (49%)

Query:    21 LQRQHAISVRFFANEAAPQALKG-DEMLKNIFLDVKKKFETALGVLRKEKITIAPEDPAA 79
             L +++A+  R    EA  +A +   + L++  + ++KK +     L  +K + AP+D   
Sbjct:    13 LDKENALD-RAEQAEADKKAAEDRSKRLEDELVSLQKKLKATEDEL--DKYSEAPKDAQE 69

Query:    80 VSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTYLLTLKEIRERRGLIDEHGA 139
               + A    T  E AD+ S ++RI    E          T L  L+E  E+     E G 
Sbjct:    70 KLELAEKKATDAE-ADVASLNRRIQLVEEELDRAQERLATALQKLEEA-EKAADESERGM 127

Query:   140 EAMMMDALEKVEK-EIKKPLMRNDKKGMALLTAEFDKINKKLGIRKEDLPKYEEQLELKI 198
             + +   A +  EK EI++  ++  K        +++++ +KL I + DL + EE+ EL  
Sbjct:   128 KVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSE 187

Query:   199 AK-AQLEE-LKK--DALEAMETQKKR---EEFKDEEMVEVKS 233
              K A+LEE LK   + L+++E Q ++   +E K EE ++V S
Sbjct:   188 GKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLS 229

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

WB|WBGene00001328 epi-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 123 (48.4 bits), Expect = 0.00053, P = 0.00053
 Identities = 54/223 (24%), Positives = 98/223 (43%)

Query:    18 QVILQRQHAI-SVRFFANEAAPQALKGDEMLKNIFLDVKKKFETALGVLRKEKITIAPED 76
             +V+ + Q A  SVR  A  A   A+       N+   + K+ E  L  L        PE 
Sbjct:  2242 EVMKRAQRARQSVRSLAEIAL--AIGSSSKAVNVDPRLLKEAEETLMTLEAASADQYPEK 2299

Query:    77 PAAV-SQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTYLLTLKEI-RERRGLI 134
                V  +   + K ++E+ +   + +    T E +     +   YL + +++ +E +   
Sbjct:  2300 AQTVPGKLEEIQKKIQEETEKLDKQKE---TFEAQKKRAEELAAYLNSAQQLLKESKSKA 2356

Query:   135 DEHGAEAMMMDALEKVEKEIKKPLMRNDKKGMALLTAEFDKINKKLGIRKEDLPKYEEQL 194
             D+    A M+  L KVE  +    + +D + +     EF K+N  +G   E+L    E  
Sbjct:  2357 DKSNNIAKMLQ-LTKVENLVAA--ITDDLERVEAAKGEFQKLNVAIGNITENLKDKRE-- 2411

Query:   195 ELKIAKAQLEELKKDALEAMETQKKREEFKDEEMVEVKSLDVR 237
             E+  A   L E + D  EA+E  KKR   +DE+ V+++ ++ +
Sbjct:  2412 EMTHAVTTLNETRNDVAEALEAAKKRVR-RDEKSVDMQLVNAK 2453

GO:0005604 "basement membrane" evidence=IEA;IDA

GO:0007155 "cell adhesion" evidence=IEA

GO:0010171 "body morphogenesis" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040027 "negative regulation of vulval development" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0002009 "morphogenesis of an epithelium" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0006915 "apoptotic process" evidence=IMP

GO:0016477 "cell migration" evidence=IMP

GO:0007414 "axonal defasciculation" evidence=IMP

GO:0042127 "regulation of cell proliferation" evidence=IMP

GO:0001764 "neuron migration" evidence=IMP

GO:0071711 "basement membrane organization" evidence=IMP

GO:0040017 "positive regulation of locomotion" evidence=IMP

GO:0009408 "response to heat" evidence=IMP

GO:0010950 "positive regulation of endopeptidase activity" evidence=IMP

GO:0051788 "response to misfolded protein" evidence=IMP

UNIPROTKB|J3QTA2 BAG1 "BAG family molecular chaperone regulator 1" [Homo sapiens (taxid:9606)]

 Score = 111 (44.1 bits), Expect = 0.00066, P = 0.00066
 Identities = 59/244 (24%), Positives = 117/244 (47%)

Query:     6 RLASKSKQLCSSQVILQRQHAISVRFFANEA--APQALKGDEMLKNIFLDVKKKFETALG 63
             R +++S++L  S+ +   + A     ++ EA  + +A +G+EM  N   +V +  E+   
Sbjct:    78 RRSTRSEELTRSEELTLSEEAT----WSEEATQSEEATQGEEM--NRSQEVTRDEEST-- 129

Query:    64 VLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQR---------IAYTIETRTAGI 114
               R E++T   E+ AA      V  +  EK DL   SQ+         +A  +E    G+
Sbjct:   130 --RSEEVT--REEMAAAGLTVTVTHS-NEKHDLHVTSQQGSSEPVVQDLAQVVE-EVIGV 183

Query:   115 PDARTYLL----TLKEIRERRGLID-EHGAEAMMMDALEKVEKEIKKPLMRNDKKGMALL 169
             P +   L+    +LKE+      +  + G   M++      ++E++   +++ +K +  +
Sbjct:   184 PQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGKKNSPQEEVELKKLKHLEKSVEKI 243

Query:   170 TAEFDKINKKL-GIRKEDLPK-YEEQLELKI---AKAQLEELKKDALEAMETQKKREEFK 224
               + +++NK+L GI++  LPK  + +   K+    KA +E+  K  LE ++T    E FK
Sbjct:   244 ADQLEELNKELTGIQQGFLPKDLQAEALCKLDRRVKATIEQFMK-ILEEIDTLILPENFK 302

Query:   225 DEEM 228
             D  +
Sbjct:   303 DSRL 306

GO:0051087 "chaperone binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0030182 "neuron differentiation" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0043525 "positive regulation of neuron apoptotic process" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0051219 "phosphoprotein binding" evidence=IEA

UNIPROTKB|Q99933 BAG1 "BAG family molecular chaperone regulator 1" [Homo sapiens (taxid:9606)]

 Score = 111 (44.1 bits), Expect = 0.00066, P = 0.00066
 Identities = 59/244 (24%), Positives = 117/244 (47%)

Query:     6 RLASKSKQLCSSQVILQRQHAISVRFFANEA--APQALKGDEMLKNIFLDVKKKFETALG 63
             R +++S++L  S+ +   + A     ++ EA  + +A +G+EM  N   +V +  E+   
Sbjct:    78 RRSTRSEELTRSEELTLSEEAT----WSEEATQSEEATQGEEM--NRSQEVTRDEEST-- 129

Query:    64 VLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQR---------IAYTIETRTAGI 114
               R E++T   E+ AA      V  +  EK DL   SQ+         +A  +E    G+
Sbjct:   130 --RSEEVT--REEMAAAGLTVTVTHS-NEKHDLHVTSQQGSSEPVVQDLAQVVE-EVIGV 183

Query:   115 PDARTYLL----TLKEIRERRGLID-EHGAEAMMMDALEKVEKEIKKPLMRNDKKGMALL 169
             P +   L+    +LKE+      +  + G   M++      ++E++   +++ +K +  +
Sbjct:   184 PQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGKKNSPQEEVELKKLKHLEKSVEKI 243

Query:   170 TAEFDKINKKL-GIRKEDLPK-YEEQLELKI---AKAQLEELKKDALEAMETQKKREEFK 224
               + +++NK+L GI++  LPK  + +   K+    KA +E+  K  LE ++T    E FK
Sbjct:   244 ADQLEELNKELTGIQQGFLPKDLQAEALCKLDRRVKATIEQFMK-ILEEIDTLILPENFK 302

Query:   225 DEEM 228
             D  +
Sbjct:   303 DSRL 306


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.130   0.339    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      240       240   0.00093  113 3  10 23  0.45    33
                                                     32  0.44    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  581 (62 KB)
  Total size of DFA:  199 KB (2113 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  41.53u 0.12s 41.65t   Elapsed:  00:00:03
  Total cpu time:  41.53u 0.12s 41.65t   Elapsed:  00:00:03
  Start:  Fri May 10 05:56:50 2013   End:  Fri May 10 05:56:53 2013

GO:0051087 "chaperone binding" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0070389 "chaperone cofactor-dependent protein refolding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005057 "receptor signaling protein activity" evidence=TAS

GO:0043066 "negative regulation of apoptotic process" evidence=TAS

GO:0007166 "cell surface receptor signaling pathway" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SJ12	ATP7_ARATH	No assigned EC number	0.7208	1.0	1.0	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00019377001 SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (240 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	240
PLN02744	539	PLN02744, PLN02744, dihydrolipoyllysine-residue ac	0.002

>gnl|CDD|215397 PLN02744, PLN02744, dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex

 Score = 38.7 bits (90), Expect = 0.002
 Identities = 19/47 (40%), Positives = 31/47 (65%)

Query: 2  AFASRLASKSKQLCSSQVILQRQHAISVRFFANEAAPQALKGDEMLK 48
          A+ASR+ + SK+L +   +L+R+HA  VR+F+N       KGD++ K
Sbjct: 1  AYASRIINHSKKLRNVSNLLRREHAALVRYFSNSTRSSLGKGDDIAK 47

Length = 539

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	240
PLN02744	539	dihydrolipoyllysine-residue acetyltransferase comp	85.51

>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex

Probab=85.51  E-value=0.34  Score=48.63  Aligned_cols=47  Identities=40%  Similarity=0.632  Sum_probs=43.7

Q ss_pred             hhhhhhhhhhhhhhhhHHHHhhccchhHhhhhhhcCCcCCCchhHHH
Q 026285            2 AFASRLASKSKQLCSSQVILQRQHAISVRFFANEAAPQALKGDEMLK   48 (240)
Q Consensus         2 a~~~R~~srs~~~~~~~~~~~~~~~~~vR~fA~~Aap~~~kgdd~lK   48 (240)
                      +++||++..|+.|+....+|...|+..||+|+....+...+||++.+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   47 (539)
T PLN02744          1 AYASRIINHSKKLRNVSNLLRREHAALVRYFSNSTRSSLGKGDDIAK   47 (539)
T ss_pred             CchHHHhhhchhhcchHHHhcccccceEEEecCCCccCcccccchhh
Confidence            47899999999999999999999999999999998888889999855

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	240
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 2e-06
 Identities = 41/253 (16%), Positives = 70/253 (27%), Gaps = 77/253 (30%)

Query: 12  KQLCSSQVILQRQHAISVRF--------FANEAAPQALKGDEMLKNIFLDVKKKFETAL- 62
           K   +  V     + +  +           N  +P+ +   EML+ +   +   + +   
Sbjct: 163 KTWVALDVC--LSYKVQCKMDFKIFWLNLKNCNSPETVL--EMLQKLLYQIDPNWTSRSD 218

Query: 63  ----GVLRKEKITIAPEDPAAVSQYAN---VMKTVREK--ADLFSESQRIAYTIETRTAG 113
                 LR   I            Y N   V+  V+     + F+ S +I  T  TR   
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT--TRFKQ 276

Query: 114 IPDARTYLLTLKEIRERRGLIDEHGAEAMMMDALEKVEKEIKKPLMRNDKKGMALLTAEF 173
           + D       L         +D H         L   E               +LL    
Sbjct: 277 VTDF------LSAATTTHISLDHH------SMTLTPDE-------------VKSLLL--- 308

Query: 174 DKINKKLGIRKEDLPKYEEQ---LELKIAKA------------------QLEELKKDALE 212
               K L  R +DLP+         L I                     +L  + + +L 
Sbjct: 309 ----KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN 364

Query: 213 AMETQKKREEFKD 225
            +E  + R+ F  
Sbjct: 365 VLEPAEYRKMFDR 377

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00