Citrus Sinensis ID: 026318

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240
Protein Sequence
MAARNHISRHPDSARGFRDGPRPVLTRGLAPMHFHPMTLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTERRACGLGKISFFLGALTWSILL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEccccEHHHcc
Coil and Loop (DISEMBL)
maarnhisrhpdsargfrdgprpvltrglapmhfhpmtlEEEIEIQRREMHRIISenrhaiddnTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTERRACGLGKISFFLGALTWSILL
Flexible Loop (DISEMBL)
maarnhisrhpdsargfrdgprPVLTRglapmhfhpmTLEEEIEIQRREMHRIISEnrhaiddntHLQRELTASKDEIHRLGQIipklradkeaHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVqklnssrqelttqikgltkdvnRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTErracglgkisfflgaltwsill
Low Complexity Region (SEG)
MAARNHISRHPDSARGFRDGPRPVLTRGLAPMHFHPMTLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTERRACGLGKISFFLGALTWSILL
Disordered region (IsUnstruct)
*********************************F*******************************************IHRLGQIIPKLR*******RELFDRGLKLEVEL*********VV***********************************QLIAMRADIDGIRSELV*******************************REIEKLRAELLNTERRACGLGKISFFLGALTWSIL*
Disordered Region (DISOPRED)
*************************************************************************************************************************************************************************************************************************************FLGALTWSILL
Disordered Region (DISEMBL)
***************GFRDGPRPVLTRGLAPMHFHPMTLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTERRACGLGKISFFLGALTWSILL
Disordered Region (DISPRO)
******************DGPRPVLTRGLAPMHFHPMTLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTERRACGLGKISFFLGALTWSILL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAARNHISRHPDSARGFRDGPRPVLTRGLAPMHFHPMTLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRADIDGIRSELVEARRAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxACGLGKISFFLGALTWSILL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	240
225423975	265	PREDICTED: uncharacterized protein LOC10	0.920	0.833	0.714	6e-87
449446201	261	PREDICTED: uncharacterized protein LOC10	0.958	0.881	0.658	3e-76
358344687	283	hypothetical protein MTR_040s0047 [Medic	0.925	0.784	0.493	9e-54
307136246	175	hypothetical protein [Cucumis melo subsp	0.729	1.0	0.634	6e-53
357454679	271	hypothetical protein MTR_2g100240 [Medic	0.875	0.774	0.506	1e-52
356556722	286	PREDICTED: uncharacterized protein LOC10	0.783	0.657	0.537	3e-50
147810266	279	hypothetical protein VITISV_027853 [Viti	0.933	0.802	0.488	2e-49
359482838	282	PREDICTED: uncharacterized protein LOC10	0.933	0.794	0.488	2e-49
363806838	285	uncharacterized protein LOC100787621 [Gl	0.916	0.771	0.493	6e-49
148909320	288	unknown [Picea sitchensis] gi|224286475|	0.891	0.743	0.497	8e-48

>gi|225423975|ref|XP_002282562.1| PREDICTED: uncharacterized protein LOC100242187 isoform 1 [Vitis vinifera] gi|147801663|emb|CAN76874.1| hypothetical protein VITISV_007099 [Vitis vinifera] gi|297737820|emb|CBI27021.3| unnamed protein product [Vitis vinifera]

 Score =  326 bits (835), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 158/221 (71%), Positives = 188/221 (85%)

Query: 1   MAARNHISRHPDSARGFRDGPRPVLTRGLAPMHFHPMTLEEEIEIQRREMHRIISENRHA 60
           MA RN + R+P+  RGFRDGP PVL RG  P+  HP+ +EEE+E+Q RE+ RI++ENRH 
Sbjct: 1   MAGRNRMPRNPNGFRGFRDGPPPVLNRGPGPLPLHPVAMEEELELQHRELQRIVAENRHV 60

Query: 61  IDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEV 120
           IDDNT LQ EL A+KD+IHRLGQIIPKLRAD+E   REL DRGLKLE +LRA EP+R EV
Sbjct: 61  IDDNTMLQSELAAAKDDIHRLGQIIPKLRADREVQARELIDRGLKLEADLRAVEPLRTEV 120

Query: 121 VQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFE 180
           +QLRAE QKLN+SRQ+L+ Q++GLT+DV RL+AEN+QLIAMRADID +R EL EARRAFE
Sbjct: 121 IQLRAEAQKLNASRQDLSAQVQGLTQDVARLQAENQQLIAMRADIDRMRKELAEARRAFE 180

Query: 181 FEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTERRA 221
           +EKKANEEQ+EQKQAME NLISMAREIEKLRA+ LNT+RRA
Sbjct: 181 YEKKANEEQLEQKQAMEKNLISMAREIEKLRADQLNTDRRA 221

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446201|ref|XP_004140860.1| PREDICTED: uncharacterized protein LOC101218774 [Cucumis sativus] gi|449512724|ref|XP_004164125.1| PREDICTED: uncharacterized protein LOC101226085 [Cucumis sativus]

 Score =  290 bits (743), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 152/231 (65%), Positives = 190/231 (82%), Gaps = 1/231 (0%)

Query: 1   MAARNHISRHPDSARGFRDGPRPVLTRGLAPMHFHPMTLEEEIEIQRREMHRIISENRHA 60
           MA RN  SRH D  R  RD PR  + R  AP+  HP  LEEE+E+QRREM RIIS+NR  
Sbjct: 1   MAGRNRSSRHIDGYRVSRDVPRSYIERVPAPLPIHPAALEEELELQRREMQRIISDNRMV 60

Query: 61  IDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEV 120
           IDDNT LQREL+A+K+EIHRL Q+IPK+ ++KE+ +REL +RGLKLE ELRASEP+++EV
Sbjct: 61  IDDNTVLQRELSAAKEEIHRLNQVIPKIVSEKESQSRELLERGLKLEAELRASEPLKSEV 120

Query: 121 VQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFE 180
           +QLRAE+QKLN+ RQ+L+ Q++ LTKDVNRL+AEN+QL +MRAD+DG+  EL+EARRA+E
Sbjct: 121 LQLRAEIQKLNTLRQDLSAQVQSLTKDVNRLQAENQQLNSMRADMDGLHKELIEARRAYE 180

Query: 181 FEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTERRACGLGKISFFL 231
           +EKKANEEQIEQKQ+ME NL+SMAREIEKLRAE LN E RA GLG  ++ +
Sbjct: 181 YEKKANEEQIEQKQSMEKNLVSMAREIEKLRAEKLNIE-RARGLGAENYGI 230

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358344687|ref|XP_003636419.1| hypothetical protein MTR_040s0047 [Medicago truncatula] gi|355502354|gb|AES83557.1| hypothetical protein MTR_040s0047 [Medicago truncatula]

 Score =  216 bits (549), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 115/233 (49%), Positives = 168/233 (72%), Gaps = 11/233 (4%)

Query: 1   MAARNHISRHP--DSARGF-RDGPRPVLTRGLAPM---HF--HPMTLEEEIEIQRREMHR 52
           M +R+ + R P   S RG+  +GP     RG  PM   H   HP  LEEE+E+Q  EM R
Sbjct: 1   MGSRHRVHREPPMSSRRGYPSEGP---YARGPPPMPRQHIPPHPALLEEELEVQHAEMRR 57

Query: 53  IISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRA 112
           ++++NR  IDD   LQR+L A+K+E+HR+   I  +RA+ E H+REL D+ +KLE +LR+
Sbjct: 58  LVADNRRLIDDRMTLQRDLAAAKEELHRMNLAIGDIRAEHEMHSRELVDKNMKLESDLRS 117

Query: 113 SEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSEL 172
           +EP++ EV+QLRAEVQKL+S +QEL+ +++ LTKDV RL+++N+Q+ +MR++IDG+  EL
Sbjct: 118 TEPLKNEVIQLRAEVQKLSSIKQELSGKVQTLTKDVARLQSDNQQIPSMRSEIDGLHQEL 177

Query: 173 VEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTERRACGLG 225
           + AR   ++EKKAN E +EQ+Q+ME N++SMARE+EKLRAEL + + R  G G
Sbjct: 178 MRARTMVDYEKKANMEFMEQRQSMEKNMVSMAREVEKLRAELASMDGRHWGAG 230

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307136246|gb|ADN34079.1| hypothetical protein [Cucumis melo subsp. melo]

 Score =  213 bits (542), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 111/175 (63%), Positives = 141/175 (80%)

Query: 1   MAARNHISRHPDSARGFRDGPRPVLTRGLAPMHFHPMTLEEEIEIQRREMHRIISENRHA 60
           MA RN  SRH D  R  RD PR  + R  AP+  HP  LEEE+E+QRREM RIIS+NR  
Sbjct: 1   MAGRNRSSRHIDGYRVSRDVPRSYIERVPAPLPIHPAALEEELELQRREMQRIISDNRMV 60

Query: 61  IDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEV 120
           IDDNT LQREL+A+K+EIHRL Q+IPK+ ++KE+ +REL +RGLKLE ELRASEP+++EV
Sbjct: 61  IDDNTVLQRELSAAKEEIHRLNQVIPKIVSEKESQSRELLERGLKLEAELRASEPLKSEV 120

Query: 121 VQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEA 175
           +QLRAE+QKLN+ RQ+L+ Q++ LTKDV RL+AEN+QL +MRADIDG+  EL+EA
Sbjct: 121 LQLRAEIQKLNTLRQDLSAQVQSLTKDVTRLQAENQQLNSMRADIDGLHKELIEA 175

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357454679|ref|XP_003597620.1| hypothetical protein MTR_2g100240 [Medicago truncatula] gi|124360403|gb|ABN08416.1| Protein kinase PKN/PRK1, effector [Medicago truncatula] gi|355486668|gb|AES67871.1| hypothetical protein MTR_2g100240 [Medicago truncatula]

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 111/219 (50%), Positives = 161/219 (73%), Gaps = 9/219 (4%)

Query: 13  SARGF-RDGPRPVLTRGLAPM---HF--HPMTLEEEIEIQRREMHRIISENRHAIDDNTH 66
           S RG+  +GP     RG  PM   H   HP  LEEE+E+Q  EM R++++NR  IDD   
Sbjct: 3   SRRGYPSEGP---YARGPPPMPRQHIPPHPALLEEELEVQHAEMRRLVADNRRLIDDRMT 59

Query: 67  LQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAE 126
           LQR+L A+K+E+HR+   I  +RA+ E H+REL D+ +KLE +LR++EP++ EV+QLRAE
Sbjct: 60  LQRDLAAAKEELHRMNLAIGDIRAEHEMHSRELVDKNMKLESDLRSTEPLKNEVIQLRAE 119

Query: 127 VQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKAN 186
           VQKL+S +QEL+ +++ LTKDV RL+++N+Q+ +MR++IDG+  EL+ AR   ++EKKAN
Sbjct: 120 VQKLSSIKQELSGKVQTLTKDVARLQSDNQQIPSMRSEIDGLHQELMRARTMVDYEKKAN 179

Query: 187 EEQIEQKQAMENNLISMAREIEKLRAELLNTERRACGLG 225
            E +EQ+Q+ME N++SMARE+EKLRAEL + + R  G G
Sbjct: 180 MEFMEQRQSMEKNMVSMAREVEKLRAELASMDGRHWGAG 218

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556722|ref|XP_003546672.1| PREDICTED: uncharacterized protein LOC100809038 [Glycine max]

 Score =  204 bits (518), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 101/188 (53%), Positives = 146/188 (77%)

Query: 38  TLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTR 97
            LEEE+E Q  EM R++++NR  IDD   LQR+L A+K+E+HR+   I  +RA+ EAH+R
Sbjct: 43  VLEEELEFQHAEMRRLVADNRRLIDDRMALQRDLGAAKEELHRMNLAIGDIRAEHEAHSR 102

Query: 98  ELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQ 157
           EL ++G+K+E +LRA+EP++ EV+QLR+EV+KLN+ +QELT +++ LT+DV RL+A+N+Q
Sbjct: 103 ELVEKGMKMEADLRANEPLKNEVMQLRSEVKKLNNLKQELTGKVQTLTQDVARLQADNQQ 162

Query: 158 LIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNT 217
           +  MRA IDG+  EL+ AR   ++EKKAN E +EQ+Q+ME NL+SMARE+EKLRAEL + 
Sbjct: 163 IPMMRAKIDGLHQELMHARTMVDYEKKANMEFMEQRQSMEKNLVSMAREVEKLRAELASA 222

Query: 218 ERRACGLG 225
           + R  G G
Sbjct: 223 DSRHWGAG 230

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147810266|emb|CAN71449.1| hypothetical protein VITISV_027853 [Vitis vinifera]

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 111/227 (48%), Positives = 156/227 (68%), Gaps = 3/227 (1%)

Query: 1   MAARNHISRHP-DSARGFR-DGPRPVLTRGLAPMHFHPMTLEEEIEIQRREMHRIISENR 58
           MA RN   R   D  RGF  +GP               M LEEE E+Q  EM R+  ENR
Sbjct: 1   MAGRNRFPRDAFDGRRGFPPEGPFLRGPPLPRLPPHPAM-LEEEFEMQHAEMRRLFGENR 59

Query: 59  HAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRA 118
             ++D   LQ+EL  +K+E+HR+   I  +RA++E H+REL ++GLKLE +LRA+EP++ 
Sbjct: 60  RLVEDRMALQQELGVAKEELHRMNLAIGDIRAEQELHSRELIEKGLKLEADLRATEPLKN 119

Query: 119 EVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRA 178
           E VQLR+E+QKLN+ RQ+L  Q++ L+++V RL+A+NKQ+  +RA+I+G+  EL+ AR A
Sbjct: 120 EAVQLRSEIQKLNNIRQDLAGQVQNLSQEVARLQADNKQIPLLRAEIEGLHQELMRARTA 179

Query: 179 FEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTERRACGLG 225
            ++EKK N E +EQ+QAME NL+SMARE+EKLRAEL +T+ R  G G
Sbjct: 180 VDYEKKGNIELMEQRQAMEKNLVSMAREVEKLRAELASTDARPWGAG 226

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482838|ref|XP_002278937.2| PREDICTED: uncharacterized protein LOC100253153 [Vitis vinifera] gi|297743072|emb|CBI35939.3| unnamed protein product [Vitis vinifera]

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 111/227 (48%), Positives = 156/227 (68%), Gaps = 3/227 (1%)

Query: 1   MAARNHISRHP-DSARGFR-DGPRPVLTRGLAPMHFHPMTLEEEIEIQRREMHRIISENR 58
           MA RN   R   D  RGF  +GP               M LEEE E+Q  EM R+  ENR
Sbjct: 1   MAGRNRFPRDAFDGRRGFPPEGPFLRGPPLPRLPPHPAM-LEEEFEMQHAEMRRLFGENR 59

Query: 59  HAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRA 118
             ++D   LQ+EL  +K+E+HR+   I  +RA++E H+REL ++GLKLE +LRA+EP++ 
Sbjct: 60  RLVEDRMALQQELGVAKEELHRMNLAIGDIRAEQELHSRELIEKGLKLEADLRATEPLKN 119

Query: 119 EVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRA 178
           E VQLR+E+QKLN+ RQ+L  Q++ L+++V RL+A+NKQ+  +RA+I+G+  EL+ AR A
Sbjct: 120 EAVQLRSEIQKLNNIRQDLAGQVQNLSQEVARLQADNKQIPLLRAEIEGLHQELMRARTA 179

Query: 179 FEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTERRACGLG 225
            ++EKK N E +EQ+QAME NL+SMARE+EKLRAEL +T+ R  G G
Sbjct: 180 VDYEKKGNIELMEQRQAMEKNLVSMAREVEKLRAELASTDARPWGAG 226

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363806838|ref|NP_001242546.1| uncharacterized protein LOC100787621 [Glycine max] gi|255645257|gb|ACU23126.1| unknown [Glycine max]

 Score =  199 bits (507), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 111/225 (49%), Positives = 164/225 (72%), Gaps = 5/225 (2%)

Query: 1   MAARNHISRHPDSAR-GFR-DGPRPVLTRGLAPMHFHPM---TLEEEIEIQRREMHRIIS 55
           MA+R+ + R P +AR G+  +GP   +     P    P     LEEE+E Q  EM R+++
Sbjct: 1   MASRHRVHREPLNARRGYPPEGPYARVPPMPRPPPPIPPHPAVLEEELEFQHAEMRRLVA 60

Query: 56  ENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEP 115
           +NR  IDD   LQR+L A+K+E+HR+   I  +RA+ EAH+REL ++G+K+E +LRA+EP
Sbjct: 61  DNRRLIDDRMALQRDLGAAKEELHRMNLAIGDIRAEHEAHSRELVEKGMKMEADLRANEP 120

Query: 116 VRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEA 175
           ++ EV+QLR+EV+KLN+ +QELT +++ LT+DV RL+A+N+Q+  MRA+IDG+  EL+ A
Sbjct: 121 LKNEVMQLRSEVKKLNNLKQELTGKVQTLTQDVARLQADNQQIPMMRAEIDGLHQELMRA 180

Query: 176 RRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTERR 220
           R   ++EKKAN E +EQ+Q+ME NL+SMARE+EKLRAEL + + R
Sbjct: 181 RTMVDYEKKANMEFMEQRQSMEKNLVSMAREVEKLRAELASADSR 225

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|148909320|gb|ABR17759.1| unknown [Picea sitchensis] gi|224286475|gb|ACN40944.1| unknown [Picea sitchensis]

 Score =  196 bits (497), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 115/231 (49%), Positives = 159/231 (68%), Gaps = 17/231 (7%)

Query: 1   MAARNHISRHP---------DSARGFRDGP-RPVLTRGLAPMHFHPMTLEEEIEIQRREM 50
           MA RN + RH                RDGP RP    G  P   HP  LEEE+E+Q  E+
Sbjct: 1   MAGRNRLPRHALNGGPRGFPPGPGPIRDGPYRP----GPLP---HPARLEEELELQYEEI 53

Query: 51  HRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVEL 110
            R+++ENR     +  L+REL  ++DE+HRL QI+  ++ DKE   R+L D+ + LE EL
Sbjct: 54  QRLLAENRRLAATHVDLRRELAGAQDELHRLNQIVGNVKVDKERQARDLVDKCMNLEAEL 113

Query: 111 RASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRS 170
           R+ EP+RAEV+QLRA+ QKL++SRQEL+ Q++ L +D+ R +A+ +Q+ A+RA++D +R 
Sbjct: 114 RSVEPLRAEVMQLRADTQKLSASRQELSAQVQALNQDLTRAQADLQQVPALRAELDSLRQ 173

Query: 171 ELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTERRA 221
           EL+ +R A E+EKKAN EQ EQ+QAME NLISMARE+EKLRAEL N+E+RA
Sbjct: 174 ELIRSRTAIEYEKKANSEQFEQRQAMEKNLISMAREVEKLRAELTNSEKRA 224

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	240
TAIR|locus:2035751	283	AT1G55170 "AT1G55170" [Arabido	0.933	0.791	0.429	5.9e-41
TAIR|locus:2089616	331	AT3G14750 "AT3G14750" [Arabido	0.895	0.649	0.348	1.5e-33
TAIR|locus:2033681	359	AT1G67170 "AT1G67170" [Arabido	0.887	0.593	0.318	3.5e-27
TAIR|locus:2060848	288	AT2G30120 [Arabidopsis thalian	0.762	0.635	0.316	2.6e-24
TAIR|locus:2156146	238	AT5G61920 "AT5G61920" [Arabido	0.870	0.878	0.285	1.2e-19
UNIPROTKB|Q3A9A0	155	CHY_2490 "Conserved domain pro	0.408	0.632	0.284	1.9e-07
TIGR_CMR|CHY_2490	155	CHY_2490 "conserved domain pro	0.408	0.632	0.284	1.9e-07
UNIPROTKB|Q6V4L1	398	Q6V4L1 "M protein" [Streptococ	0.720	0.434	0.263	4.4e-07
UNIPROTKB|Q6V4L4	397	Q6V4L4 "M protein" [Streptococ	0.725	0.438	0.256	5.7e-07
UNIPROTKB|Q6V4L9	391	Q6V4L9 "M protein" [Streptococ	0.725	0.445	0.256	7.4e-07

TAIR|locus:2035751 AT1G55170 "AT1G55170" [Arabidopsis thaliana (taxid:3702)]

 Score = 435 (158.2 bits), Expect = 5.9e-41, P = 5.9e-41
 Identities = 101/235 (42%), Positives = 149/235 (63%)

Query:     1 MAARNHISRH-PDSARGFRDGP--RPVLTRGLAPMHFHPMTLEEEIEIQ----RR---EM 50
             M+ RN I R   DS    RD P  RP L RG   +   P +L E+++IQ    RR   E+
Sbjct:     1 MSGRNRIHRDIRDSYHDHRDLPPERPFL-RGPPLLQPPPPSLLEDLQIQEGEIRRQDAEI 59

Query:    51 HRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVEL 110
              R++S+N    DD   L+REL A+K+E+HR+  +I  LRA+++   RE  ++  KLE ++
Sbjct:    60 RRLLSDNHGLADDRMVLERELVAAKEELHRMNLMISDLRAEQDLQLREFSEKRHKLEGDV 119

Query:   111 RASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRS 170
             RA E  + E  QLR EVQKL+  ++EL+  ++ L KD+ +L+++NKQ+  MRA++  ++ 
Sbjct:   120 RAMESYKKEASQLRGEVQKLDEIKRELSGNVQLLRKDLAKLQSDNKQIPGMRAEVKDLQK 179

Query:   171 ELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTERRACGLG 225
             EL+ AR A E+EKK   E +EQ+Q ME N++SMARE+EKLRAEL   + R  G G
Sbjct:   180 ELMHARDAIEYEKKEKFELMEQRQTMEKNMVSMAREVEKLRAELATVDSRPWGFG 234

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2089616 AT3G14750 "AT3G14750" [Arabidopsis thaliana (taxid:3702)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 76/218 (34%), Positives = 133/218 (61%)

Query:    10 HPDSARGFRDGPRPVLTRGLAPMHFHPMTLEEEIEIQRREMHRIISENRHAIDDNTHLQR 69
             HP      R+    V  RGL P       LE+ +  Q +++  ++++N+     +  L++
Sbjct:    44 HPSMIDDSREPQFRVDARGLPPQF---SILEDRLAAQNQDVQGLLADNQRLAATHVALKQ 100

Query:    70 ELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQK 129
             EL  ++ E+ R+   I  LRA++E   RE++D+ ++ E+ELR  + +RAE+ ++RA++++
Sbjct:   101 ELEVAQHELQRIMHYIDSLRAEEEIMMREMYDKSMRSEMELREVDAMRAEIQKIRADIKE 160

Query:   130 LNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQ 189
               S RQELT+Q+  +T+D+ RL A+ +Q+  + A+I+  + EL  AR A ++EKK   E 
Sbjct:   161 FTSGRQELTSQVHLMTQDLARLTADLQQIPTLTAEIENTKQELQRARAAIDYEKKGYAEN 220

Query:   190 IEQKQAMENNLISMAREIEKLRAELLNTERRACGLGKI 227
              E  + ME+ L++MARE+EKLRAE+ N+E  A   G +
Sbjct:   221 YEHGKIMEHKLVAMARELEKLRAEIANSETSAYANGPV 258

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0048573 "photoperiodism, flowering" evidence=RCA

TAIR|locus:2033681 AT1G67170 "AT1G67170" [Arabidopsis thaliana (taxid:3702)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 70/220 (31%), Positives = 130/220 (59%)

Query:    10 HPDSARGFRDGPRPVLTRGLAP---MHFHPMTLEEEIEIQRREMHRIISENRHAIDDNTH 66
             HP++  G      P   +G+ P   M   P  +E++   Q  E+ R+  EN+     +  
Sbjct:    27 HPETF-GNHGAIPPSAAQGVYPSFNMLPPPEVMEQKFVAQHGELQRLAIENQRLGGTHGS 85

Query:    67 LQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAE 126
             L++EL A++ EI  L   I  +++++E     L ++  K+E EL+ SE V+ E+ Q RAE
Sbjct:    86 LRQELAAAQHEIQMLHAQIGSMKSEREQRMMGLAEKVAKMETELQKSEAVKLEMQQARAE 145

Query:   127 VQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKAN 186
              + L  +R+EL +++  LT+++ +  ++ +Q+ A+ ++++ +R E  + R  +++EKK  
Sbjct:   146 ARSLVVAREELMSKVHQLTQELQKSRSDVQQIPALMSELENLRQEYQQCRATYDYEKKFY 205

Query:   187 EEQIEQKQAMENNLISMAREIEKLRAELLN---TERRACG 223
              + +E  QAME N ++MARE+EKL+A+L+N   ++RRA G
Sbjct:   206 NDHLESLQAMEKNYMTMAREVEKLQAQLMNNANSDRRAGG 245

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2060848 AT2G30120 [Arabidopsis thaliana (taxid:3702)]

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 58/183 (31%), Positives = 108/183 (59%)

Query:    39 LEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRE 98
             LE+ I IQ RE+  ++++N+     +  L+ +L  +K E+ RL +   K++A+ EA  RE
Sbjct:    39 LEDRIAIQHREIQSLLNDNQRLAVAHIGLKDQLNVAKRELERLLETAVKVKAEGEAKVRE 98

Query:    99 LFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQL 158
             ++   L++E E R  + + AE+ Q+R++VQ+L S RQEL T++     ++ + +  + + 
Sbjct:    99 VYQNALRMEAEARVIDGLGAELGQVRSDVQRLGSDRQELATELAMFDDEMAKAKPNSDRA 158

Query:   159 IAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTE 218
             I ++ +I+ +R E+ + R A E EKK     +  ++ ME  +  + REI KL  EL++ E
Sbjct:   159 IEVKLEIEILRGEIRKGRAALELEKKTRASNLHHERGMEKTIDHLNREIVKLEEELVDLE 218

Query:   219 RRA 221
              +A
Sbjct:   219 TKA 221

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2156146 AT5G61920 "AT5G61920" [Arabidopsis thaliana (taxid:3702)]

 Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 61/214 (28%), Positives = 104/214 (48%)

Query:     8 SRHPDSARGFRDGPRPVLTRGLAPMHFHPMTLEEEIEIQRREMHRIISENRHAIDDNTHL 67
             SRH D+     D PR +    ++        LE +I +Q  E+ R+ ++NR        L
Sbjct:    27 SRHHDTISSTSD-PRHLRDHQISLSDI----LENKIAVQAAEIDRLSNDNRKLASSYVAL 81

Query:    68 QRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEV 127
             + +LT +  E+  L   I K   D E   R   ++  K+E  ++  E +R EV     E 
Sbjct:    82 KEDLTVADREVQGLRAHIRKTETDHEIQIRSTLEKIAKMEGMVKNRENIRREVQSAHIEA 141

Query:   128 QKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANE 187
              +L   R+EL +++K   KD+ ++  E + L A   +++ ++ E    R+ FE EK  N 
Sbjct:   142 HRLAREREELASKVKLGMKDLKKVCLEAESLEASSQELERLKEEHQRLRKEFEEEKSGNV 201

Query:   188 EQIEQKQAMENNLISMAREIEKLRAELLNTERRA 221
             E++ Q + ME  +I   + IEKLR+E+     +A
Sbjct:   202 EKLAQLKGMERKIIGAVKAIEKLRSEISTARNKA 235

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q3A9A0 CHY_2490 "Conserved domain protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 122 (48.0 bits), Expect = 1.9e-07, P = 1.9e-07
 Identities = 31/109 (28%), Positives = 64/109 (58%)

Query:   112 ASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSE 171
             A E +R+++ ++R E+ +L +   EL  ++ GL  + N L AE  +L   +A+++G+R+E
Sbjct:    33 AVEELRSDINEMRKEINELRAEVNELRAEVNGLKAETNELRAEMSEL---KAEVNGLRTE 89

Query:   172 LVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELL-NTER 219
             + E R       + NE +  +   ME+ + +M ++I +++A L  +TE+
Sbjct:    90 MNELRT------EMNEMK-NKITTMEDKIAAMEKDIAEIKATLREHTEK 131

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CHY_2490 CHY_2490 "conserved domain protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 122 (48.0 bits), Expect = 1.9e-07, P = 1.9e-07
 Identities = 31/109 (28%), Positives = 64/109 (58%)

Query:   112 ASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSE 171
             A E +R+++ ++R E+ +L +   EL  ++ GL  + N L AE  +L   +A+++G+R+E
Sbjct:    33 AVEELRSDINEMRKEINELRAEVNELRAEVNGLKAETNELRAEMSEL---KAEVNGLRTE 89

Query:   172 LVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELL-NTER 219
             + E R       + NE +  +   ME+ + +M ++I +++A L  +TE+
Sbjct:    90 MNELRT------EMNEMK-NKITTMEDKIAAMEKDIAEIKATLREHTEK 131

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q6V4L1 Q6V4L1 "M protein" [Streptococcus pyogenes (taxid:1314)]

 Score = 139 (54.0 bits), Expect = 4.4e-07, P = 4.4e-07
 Identities = 50/190 (26%), Positives = 95/190 (50%)

Query:    40 EEEIEIQRREMH-RIISENRHAIDDNTH-LQRELTASKDEIHRLGQIIPKLRA--DKEAH 95
             E+E E + +E   + + E +   D +   L+R+L AS++   ++ + +  L A  DK   
Sbjct:   157 EKEAERKEKEAEQKKLKEEKQISDASRQGLRRDLDASREAKKQVEKDLANLTAELDKVKE 216

Query:    96 TRELFD---RGLK--LEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNR 150
              +++ D   +GL+  L+    A + V A++  L AE QKL   +Q      +GL++D+  
Sbjct:   217 EKQVSDASRQGLRRDLDASREAKKKVEADLAALTAEHQKLKEEKQISDASRQGLSRDLEA 276

Query:   151 LEAENKQLIAMRAD-------IDGIRSELVEARRAFEFEKKANEEQIE-QKQAMENNLIS 202
                  K++ A  A+       ++ +  EL E ++  E EK   + ++E + +A++  L  
Sbjct:   277 SREAKKKVEADLAEANSKLQALEKLNKELEEGKKLSEKEKAELQARLEAEAKALKEQLAK 336

Query:   203 MAREIEKLRA 212
              A E+ KLRA
Sbjct:   337 QAEELAKLRA 346

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q6V4L4 Q6V4L4 "M protein" [Streptococcus pyogenes (taxid:1314)]

 Score = 138 (53.6 bits), Expect = 5.7e-07, P = 5.7e-07
 Identities = 49/191 (25%), Positives = 96/191 (50%)

Query:    40 EEEIEIQRREMH-RIISENRHAIDDNTH-LQRELTASKDEIHRLGQIIPKLRA--DKEAH 95
             E+E E + +E   + + E +   D +   L+R+L AS++   ++ + +  L A  DK   
Sbjct:   156 EKEAERKEKEAEQKKLKEEKQISDASRQGLRRDLDASREAKKQVEKDLANLTAELDKAKE 215

Query:    96 TRELFD---RGLK--LEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNR 150
              +++ D   +GL+  L+    A + V  ++  L AE+ K+   +Q      +GL +D++ 
Sbjct:   216 EKQISDASRQGLRRDLDASREAKKQVEKDLANLTAELDKVKEEKQISDASRQGLRRDLDA 275

Query:   151 LEAENKQLI-AMR------ADIDGIRSELVEARRAFEFEKKANEEQIE-QKQAMENNLIS 202
                  KQ+  A+       A ++ +  EL E+++  E EK   + ++E + +A++  L  
Sbjct:   276 SREAKKQVEKALEEANSKLAALEKLNKELEESKKLTEKEKAELQAKLEAEAKALKEKLAK 335

Query:   203 MAREIEKLRAE 213
              A E+ KLRAE
Sbjct:   336 QAEELAKLRAE 346

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q6V4L9 Q6V4L9 "M protein" [Streptococcus pyogenes (taxid:1314)]

 Score = 137 (53.3 bits), Expect = 7.4e-07, P = 7.4e-07
 Identities = 49/191 (25%), Positives = 96/191 (50%)

Query:    40 EEEIEIQRREMH-RIISENRHAIDDNTH-LQRELTASKDEIHRLGQIIPKLRA--DKEAH 95
             E+E E + +E   + + E +   D +   L+R+L AS++   ++ + +  L A  DK   
Sbjct:   150 EKEAERKEKEAEQKKLKEEKQISDASRQGLRRDLDASREAKKQVEKDLANLTAELDKVKE 209

Query:    96 TRELFD---RGLK--LEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNR 150
              +++ D   +GL+  L+    A + V  ++  L AE+ K+   +Q      +GL +D++ 
Sbjct:   210 EKQISDASRQGLRRDLDASREAKKQVEKDLADLTAELDKVKEEKQISDASRQGLRRDLDA 269

Query:   151 LEAENKQLI-AMR------ADIDGIRSELVEARRAFEFEKKANEEQIE-QKQAMENNLIS 202
                  KQ+  A+       A ++ +  EL E+++  E EK   + ++E + +A++  L  
Sbjct:   270 SREAKKQVEKALEEANSKLAALEKLNKELEESKKLTEKEKAELQAKLEAEAKALKEQLAK 329

Query:   203 MAREIEKLRAE 213
              A E+ KLRAE
Sbjct:   330 QAEELAKLRAE 340

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00030337001 SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (227 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	240
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-06
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	7e-06
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	8e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	5e-04
TIGR04211	198	TIGR04211, SH3_and_anchor, SH3 domain protein	5e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.001
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.002
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.002
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.002
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.003
COG4942	420	COG4942, COG4942, Membrane-bound metallopeptidase	0.004

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 50.1 bits (120), Expect = 4e-07
 Identities = 40/188 (21%), Positives = 82/188 (43%), Gaps = 7/188 (3%)

Query: 39  LEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRE 98
           L  ++E   R++  +  E     ++   LQ  L   ++E+  L + + +L+   E    E
Sbjct: 707 LRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEE 766

Query: 99  L---FDRGLKLEVELRASEPVRAEVVQLRAEVQK----LNSSRQELTTQIKGLTKDVNRL 151
           L    +   KL+ E+   E  R  + +   E+++           L  +++ L +   RL
Sbjct: 767 LESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERL 826

Query: 152 EAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLR 211
           E E ++L     +++    EL E     E E +  +E++E+ +A +  L    +E+E+ +
Sbjct: 827 EQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEK 886

Query: 212 AELLNTER 219
            EL    R
Sbjct: 887 EELEEELR 894

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 47.4 bits (113), Expect = 3e-06
 Identities = 39/187 (20%), Positives = 79/187 (42%), Gaps = 11/187 (5%)

Query: 39  LEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRE 98
           LE EI + R  +  + +E     +    L+ ++ A K+E+     ++ +L          
Sbjct: 300 LEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEA 359

Query: 99  LFDRGLKLEVELRASEP----VRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAE 154
             +   KL   L   E     +R E+ +L AE+ ++ +  +EL  +I+ L + + RL   
Sbjct: 360 KEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSER 419

Query: 155 NKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAEL 214
            + L     +++    EL       + E +   E++E+ +     L    +E+E+  AEL
Sbjct: 420 LEDLKEELKELEAELEEL-------QTELEELNEELEELEEQLEELRDRLKELERELAEL 472

Query: 215 LNTERRA 221
               +R 
Sbjct: 473 QEELQRL 479

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 44/186 (23%), Positives = 86/186 (46%), Gaps = 13/186 (6%)

Query: 41  EEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELF 100
           E++E +  ++   + E    +     L++E+   K E+  L   I +L  D       L 
Sbjct: 726 EQLEQEEEKLKERLEELEEDLSS---LEQEIENVKSELKELEARIEELEEDLHKLEEALN 782

Query: 101 DRGLKLEVELRAS--EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQL 158
           D    LE  L  S    ++AE+ +L  EV ++ +  +E+  ++  LT +   LE E ++L
Sbjct: 783 D----LEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQEL 838

Query: 159 IAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLIS----MAREIEKLRAEL 214
              R D+      + +       +K+  EE++E+ +A   +L S    + +E ++L A+L
Sbjct: 839 QEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQL 898

Query: 215 LNTERR 220
              ER+
Sbjct: 899 RELERK 904

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 39/192 (20%), Positives = 78/192 (40%), Gaps = 16/192 (8%)

Query: 38  TLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTR 97
            LE++ +I R  +  +  +          L+ +L    +E+  L + + +L+ + E+   
Sbjct: 299 RLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELES-LE 357

Query: 98  ELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQ 157
              +       EL +       + +L  +++ L S   +L  QI  L  ++ RLEA  ++
Sbjct: 358 AELEELEAELEELESR------LEELEEQLETLRSKVAQLELQIASLNNEIERLEARLER 411

Query: 158 LIAMRADIDGIRSELV---------EARRAFEFEKKANEEQIEQKQAMENNLISMAREIE 208
           L   R  +     EL+         E +   E  ++  EE  E+ + +E  L  +  E+E
Sbjct: 412 LEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELE 471

Query: 209 KLRAELLNTERR 220
           +    L   ER 
Sbjct: 472 EAEQALDAAERE 483

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 39/187 (20%), Positives = 83/187 (44%), Gaps = 4/187 (2%)

Query: 39  LEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRE 98
           L  +I   R+++ R+ +E     +    L +ELT  + EI  L + + +   +      E
Sbjct: 724 LSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAE 783

Query: 99  LFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAEN--- 155
           + +   ++E      + +R  + +LRAE+  LN     L  +++ L + +   E      
Sbjct: 784 IEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDL 843

Query: 156 -KQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAEL 214
            +Q+  +  DI+ + +E+ E     E  +   E  + ++ ++E  L  +  E+E+L  EL
Sbjct: 844 EEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEEL 903

Query: 215 LNTERRA 221
              E + 
Sbjct: 904 RELESKR 910

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 38/182 (20%), Positives = 73/182 (40%), Gaps = 14/182 (7%)

Query: 39  LEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRE 98
            E EIE    ++ ++  E +   +    L+ ELT   +E   L + +  L     A  R 
Sbjct: 780 AEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERR 839

Query: 99  LFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAE---- 154
           L       E      E +  ++  L AE+++L    +EL ++++ L  +   LE      
Sbjct: 840 L-------EDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALL 892

Query: 155 NKQLIAMRADIDGIRSELVEARRAFEFEKKANEE---QIEQKQAMENNLISMAREIEKLR 211
             +L  +  ++  + S+  E RR  E  ++   +   ++E  +   +NL     E   L 
Sbjct: 893 RSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLT 952

Query: 212 AE 213
            E
Sbjct: 953 LE 954

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 43.2 bits (102), Expect = 8e-05
 Identities = 38/188 (20%), Positives = 81/188 (43%), Gaps = 4/188 (2%)

Query: 38  TLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTR 97
            LEEE+E     + ++  E     +    LQ EL   ++E+    + +  L  + E+  +
Sbjct: 762 ELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQ 821

Query: 98  ELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAE--- 154
                  ++E      E +  ++ +L  E+++L    +EL  +++ L  +   LE E   
Sbjct: 822 RRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKE 881

Query: 155 -NKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAE 213
             ++   +  ++  + SEL E +   E  ++  EE   + + +E  L  +  E+E+   +
Sbjct: 882 LEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYED 941

Query: 214 LLNTERRA 221
            L TE   
Sbjct: 942 TLETELER 949

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 34/187 (18%), Positives = 83/187 (44%), Gaps = 4/187 (2%)

Query: 38  TLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTR 97
            LEEE+     ++ ++  E +   ++   L+  L   + ++  L + + +L+ +  A   
Sbjct: 671 ELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEE 730

Query: 98  ELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQ 157
           EL     +LE      E +  E+ +L+  +++L    + L   +  L +++  LE + + 
Sbjct: 731 ELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQA 790

Query: 158 LIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQ----AMENNLISMAREIEKLRAE 213
           L     +++    E      A E E ++ E++ E+ +     +E  +  +  ++++L  E
Sbjct: 791 LQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEE 850

Query: 214 LLNTERR 220
           L   E+ 
Sbjct: 851 LEELEKE 857

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 42/185 (22%), Positives = 76/185 (41%), Gaps = 3/185 (1%)

Query: 39  LEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRE 98
           LE EI+    E+  +  E          L  E    K+E+  L   + ++  +      E
Sbjct: 327 LEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDE 386

Query: 99  LFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQL 158
           L D   KLE   R    ++ E+ +L+ E+Q+L+    +L   I G+   +N LE E +  
Sbjct: 387 LKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDK 446

Query: 159 IAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTE 218
                  +    +L      +E E    +E+ ++   +E  L  + RE+ +  A+   +E
Sbjct: 447 ALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDR---VEKELSKLQRELAEAEAQARASE 503

Query: 219 RRACG 223
            R  G
Sbjct: 504 ERVRG 508

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein

 Score = 39.6 bits (93), Expect = 5e-04
 Identities = 30/107 (28%), Positives = 54/107 (50%), Gaps = 4/107 (3%)

Query: 52  RIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELR 111
           R +S+   A +    LQ+EL   ++E+  L + + +L+ +     +EL      LE EL 
Sbjct: 56  RYLSDTPSARERLPELQQELAELQEELAELQEQLAELQQEN----QELKQELSTLEAELE 111

Query: 112 ASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQL 158
             +   A + QL A   +L+   +EL  ++  L ++   LEAEN++L
Sbjct: 112 RLQKELARIKQLSANAIELDEENRELREELAELKQENEALEAENERL 158

Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region. Length = 198

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 40.5 bits (95), Expect = 6e-04
 Identities = 33/142 (23%), Positives = 68/142 (47%)

Query: 39  LEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRE 98
           LEE  E  R E+  + +E     ++   L+RE+ + ++ + RL + +  L+ + +    E
Sbjct: 374 LEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAE 433

Query: 99  LFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQL 158
           L +   +LE      E +  ++ +LR  +++L     EL  +++ L K+++ LEA   +L
Sbjct: 434 LEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRL 493

Query: 159 IAMRADIDGIRSELVEARRAFE 180
            A +    G+R+ L        
Sbjct: 494 EAEQRASQGVRAVLEALESGLP 515

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 39.3 bits (92), Expect = 0.001
 Identities = 40/192 (20%), Positives = 80/192 (41%), Gaps = 22/192 (11%)

Query: 37  MTLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHT 96
              E+EIE  + E+                L+ EL   ++E+  L + I +L  +     
Sbjct: 263 EEAEKEIEELKSELEE--------------LREELEELQEELLELKEEIEELEGEISLLR 308

Query: 97  RELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENK 156
             L +   +LE      E ++ ++  L+ E+++  +  +EL   +  L +    LE +  
Sbjct: 309 ERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLS 368

Query: 157 QLI--------AMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIE 208
            L+        A+R ++  + +EL E R   E  K+  E   E+ + +   L  +  E++
Sbjct: 369 ALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELK 428

Query: 209 KLRAELLNTERR 220
           +L AEL   +  
Sbjct: 429 ELEAELEELQTE 440

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 36/176 (20%), Positives = 72/176 (40%), Gaps = 3/176 (1%)

Query: 39  LEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRE 98
           LE EIE     +     E   A  +   L+ ++   K+E+  L + + +LRA+      E
Sbjct: 759 LEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEE 818

Query: 99  LFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQL 158
             +   +LE   R        +  L  ++++L+   + L  +I+ L + +  LE+E + L
Sbjct: 819 AANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEAL 878

Query: 159 IAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAEL 214
           +  RA    +   L   R   E   +   E   ++  +   L  +  ++ +L   L
Sbjct: 879 LNERA---SLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRL 931

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 37/152 (24%), Positives = 62/152 (40%), Gaps = 10/152 (6%)

Query: 70  ELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQK 129
            L   ++E+  L + + +   + E  T EL +   KLE        +R EV +L  E+++
Sbjct: 233 RLEELREELEELQEELKEAEEELEELTAELQELEEKLEE-------LRLEVSELEEEIEE 285

Query: 130 LNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQ 189
           L      L  +I  L +    L      L     +++    EL         E    EE+
Sbjct: 286 LQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEK 345

Query: 190 IEQKQAMENNLISMAREIEKLRAELLNTERRA 221
           +E+ +     L S+  E+E+L AEL   E R 
Sbjct: 346 LEELK---EELESLEAELEELEAELEELESRL 374

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 37/182 (20%), Positives = 86/182 (47%), Gaps = 9/182 (4%)

Query: 42  EIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFD 101
            +E  R E+  +  E + A ++   L  EL   ++++  L   + +L  + E   +EL+ 
Sbjct: 233 RLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYA 292

Query: 102 RGLK---LEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQL 158
              +   LE + +    +R  +  L  ++++L +  +EL +++  L +++  LE + ++L
Sbjct: 293 LANEISRLEQQKQI---LRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEEL 349

Query: 159 IAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTE 218
              + +++ + +EL E     E  +   EE  EQ + + + +  +  +I  L  E+   E
Sbjct: 350 ---KEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLE 406

Query: 219 RR 220
            R
Sbjct: 407 AR 408

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 38.5 bits (90), Expect = 0.003
 Identities = 34/141 (24%), Positives = 61/141 (43%), Gaps = 4/141 (2%)

Query: 85  IPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGL 144
           I +L    E    ++ +    L    +  E +  E+ QLR E+++L+     L   +  L
Sbjct: 679 IEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARL 738

Query: 145 TKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQA----MENNL 200
             +V +LE    QL     +++    EL E     E E    E +IE+ +A    ++  L
Sbjct: 739 EAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEEL 798

Query: 201 ISMAREIEKLRAELLNTERRA 221
            ++   +++LRAEL      A
Sbjct: 799 KALREALDELRAELTLLNEEA 819

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

 Score = 37.4 bits (87), Expect = 0.004
 Identities = 35/195 (17%), Positives = 66/195 (33%), Gaps = 21/195 (10%)

Query: 38  TLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTR 97
            LE++++    E+  +       +        +L   + +I  L   +  L   +    R
Sbjct: 63  KLEKQLKSLETEIASL----EAQL---IETADDLKKLRKQIADLNARLNALEVQEREQRR 115

Query: 98  EL-------FDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNR 150
            L          G      L  S       V+L      LN +R E    +K   K +  
Sbjct: 116 RLAEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQLAA 175

Query: 151 LEAENKQLIAMRADIDGIRSELVEARRAFEF---EKKANEEQIEQ-KQAMENNLISMARE 206
           + AE   + A +A++  + SE    +        E+K    Q+     A +  L  +   
Sbjct: 176 VRAE---IAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRAN 232

Query: 207 IEKLRAELLNTERRA 221
             +L+ E+ + E  A
Sbjct: 233 ESRLKNEIASAEAAA 247

Length = 420

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	240
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	97.61
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	97.6
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	97.55
PRK11637	428	AmiB activator; Provisional	97.49
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	97.39
PF00038	312	Filament: Intermediate filament protein; InterPro:	97.28
PRK09039	343	hypothetical protein; Validated	97.16
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	97.13
PRK02224	880	chromosome segregation protein; Provisional	96.85
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	96.73
PRK03918	880	chromosome segregation protein; Provisional	96.6
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	96.58
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	96.44
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	96.41
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	96.4
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	96.39
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	96.37
PF00038	312	Filament: Intermediate filament protein; InterPro:	96.24
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	96.06
PF07798	177	DUF1640: Protein of unknown function (DUF1640); In	96.02
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	96.02
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	96.02
PRK02224	880	chromosome segregation protein; Provisional	95.99
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	95.86
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	95.86
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	95.74
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	95.66
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	95.65
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	95.6
PRK03918	880	chromosome segregation protein; Provisional	95.54
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	95.48
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	95.44
PRK11637	428	AmiB activator; Provisional	95.1
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	95.06
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	94.91
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	94.81
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	94.79
PRK04863	1486	mukB cell division protein MukB; Provisional	94.78
PRK04778	569	septation ring formation regulator EzrA; Provision	94.51
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	94.48
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	94.37
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	94.35
PF13514	1111	AAA_27: AAA domain	94.29
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	94.2
PHA02562	562	46 endonuclease subunit; Provisional	94.15
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	94.05
PRK09841	726	cryptic autophosphorylating protein tyrosine kinas	94.02
PRK04863	1486	mukB cell division protein MukB; Provisional	93.95
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	93.77
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	93.68
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	93.64
COG4372	499	Uncharacterized protein conserved in bacteria with	93.5
PF08826	61	DMPK_coil: DMPK coiled coil domain like; InterPro:	93.03
PF08647	96	BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR01395	92.9
PF07798	177	DUF1640: Protein of unknown function (DUF1640); In	92.89
PF14662	193	CCDC155: Coiled-coil region of CCDC155	92.85
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	92.83
PF07111	739	HCR: Alpha helical coiled-coil rod protein (HCR);	92.73
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	92.53
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	92.35
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	91.82
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	91.73
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	91.71
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	91.71
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	91.66
PRK10884	206	SH3 domain-containing protein; Provisional	91.6
KOG0996	1293	consensus Structural maintenance of chromosome pro	91.59
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	91.54
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	91.51
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	91.32
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	91.26
PRK09039	343	hypothetical protein; Validated	91.19
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	91.06
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	91.01
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	90.88
PRK10246	1047	exonuclease subunit SbcC; Provisional	90.75
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	90.7
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	90.52
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	90.51
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	90.48
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	90.43
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	90.4
KOG0933	1174	consensus Structural maintenance of chromosome pro	90.29
PHA02562	562	46 endonuclease subunit; Provisional	90.24
PF10186	302	Atg14: UV radiation resistance protein and autopha	90.07
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	89.99
PRK11546	143	zraP zinc resistance protein; Provisional	89.89
KOG4673	961	consensus Transcription factor TMF, TATA element m	89.82
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	89.56
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	89.52
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	89.16
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	88.94
PRK11519	719	tyrosine kinase; Provisional	88.89
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	88.8
TIGR01010	362	BexC_CtrB_KpsE polysaccharide export inner-membran	88.74
KOG4809	654	consensus Rab6 GTPase-interacting protein involved	88.59
PLN03229	762	acetyl-coenzyme A carboxylase carboxyl transferase	88.42
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	88.19
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	88.04
PF15294	278	Leu_zip: Leucine zipper	88.02
COG4942	420	Membrane-bound metallopeptidase [Cell division and	87.99
PF10234	267	Cluap1: Clusterin-associated protein-1; InterPro:	87.97
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	87.92
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	87.69
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	87.66
PRK10246	1047	exonuclease subunit SbcC; Provisional	87.4
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	87.11
PF13514	1111	AAA_27: AAA domain	86.91
KOG0933	1174	consensus Structural maintenance of chromosome pro	86.75
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	86.69
KOG0971	1243	consensus Microtubule-associated protein dynactin	85.94
PF12592	57	DUF3763: Protein of unknown function (DUF3763); In	85.94
KOG1853	333	consensus LIS1-interacting protein NUDE [Cytoskele	85.94
COG3206	458	GumC Uncharacterized protein involved in exopolysa	85.91
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	85.51
COG4942	420	Membrane-bound metallopeptidase [Cell division and	85.42
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	85.17
PF04728	56	LPP: Lipoprotein leucine-zipper; InterPro: IPR0068	84.88
PF08912	69	Rho_Binding: Rho Binding; InterPro: IPR015008 Rho	84.79
KOG2129	552	consensus Uncharacterized conserved protein H4 [Fu	84.73
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	84.63
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	84.62
COG2433	652	Uncharacterized conserved protein [Function unknow	84.22
KOG4603	201	consensus TBP-1 interacting protein [Signal transd	84.14
KOG1853	333	consensus LIS1-interacting protein NUDE [Cytoskele	83.68
KOG1924	1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	83.66
PLN03229	762	acetyl-coenzyme A carboxylase carboxyl transferase	82.78
PRK01156	895	chromosome segregation protein; Provisional	82.35
TIGR01010	362	BexC_CtrB_KpsE polysaccharide export inner-membran	81.84
PF13805	271	Pil1: Eisosome component PIL1; PDB: 3PLT_B.	81.52
TIGR03794	421	NHPM_micro_HlyD NHPM bacteriocin system secretion	81.47
PRK06569	155	F0F1 ATP synthase subunit B'; Validated	81.18
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	81.18
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	80.84
PF10186	302	Atg14: UV radiation resistance protein and autopha	80.84
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	80.57

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=97.61  E-value=0.022  Score=58.48  Aligned_cols=48  Identities=17%  Similarity=0.144  Sum_probs=21.0

Q ss_pred             hHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhh
Q 026318           39 LEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIP   86 (240)
Q Consensus        39 LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~   86 (240)
                      ++.++.....++..+-.+...+-.....+.+++...+.++..+..-+.
T Consensus       292 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~  339 (1164)
T TIGR02169       292 VKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIE  339 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444444444444444444443333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=97.60  E-value=0.027  Score=57.39  Aligned_cols=6  Identities=50%  Similarity=0.866  Sum_probs=2.3

Q ss_pred             hHHHHH
Q 026318           39 LEEEIE   44 (240)
Q Consensus        39 LEe~La   44 (240)
                      ++..+.
T Consensus       703 ~~~~l~  708 (1179)
T TIGR02168       703 LRKELE  708 (1179)
T ss_pred             HHHHHH
Confidence            334433

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=97.55  E-value=0.028  Score=57.72  Aligned_cols=23  Identities=22%  Similarity=0.336  Sum_probs=9.7

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHh
Q 026318          193 KQAMENNLISMAREIEKLRAELL  215 (240)
Q Consensus       193 ~qaMEknlisMarEvEKLRaEla  215 (240)
                      ...+.+++-.+-.++.+++.++.
T Consensus       471 l~~~~~~l~~l~~~l~~l~~~~~  493 (1164)
T TIGR02169       471 LYDLKEEYDRVEKELSKLQRELA  493 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444443

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PRK11637 AmiB activator; Provisional

Probab=97.49  E-value=0.064  Score=51.08  Aligned_cols=81  Identities=17%  Similarity=0.218  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHhHHHHHHH
Q 026318          127 VQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMARE  206 (240)
Q Consensus       127 ~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEknlisMarE  206 (240)
                      ++.+...+++|..+.+.+..+++......+..-.-+++++..+.|.+.....++-+++.....+.+.+.-++++-+.-.+
T Consensus       172 l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~  251 (428)
T PRK11637        172 IAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIAR  251 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555556666666666666666666666666666666777777766666777777777777777777766666544443


Q ss_pred             H
Q 026318          207 I  207 (240)
Q Consensus       207 v  207 (240)
                      +
T Consensus       252 l  252 (428)
T PRK11637        252 A  252 (428)
T ss_pred             H
Confidence            3

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=97.39  E-value=0.06  Score=54.91  Aligned_cols=19  Identities=26%  Similarity=0.380  Sum_probs=9.4

Q ss_pred             chHHHHHHHHHHHHHHHHh
Q 026318           38 TLEEEIEIQRREMHRIISE   56 (240)
Q Consensus        38 ~LEe~La~Q~~EiqrLl~d   56 (240)
                      -++.++..-+.++..+-..
T Consensus       688 ~l~~~l~~~~~~~~~~~~~  706 (1179)
T TIGR02168       688 ELEEKIAELEKALAELRKE  706 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3555555555444444433

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=97.28  E-value=0.074  Score=47.86  Aligned_cols=116  Identities=21%  Similarity=0.302  Sum_probs=93.1

Q ss_pred             hHHHHHHHHHHHHHHHHhhhhhhHh---------------hHHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhh
Q 026318           39 LEEEIEIQRREMHRIISENRHAIDD---------------NTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRG  103 (240)
Q Consensus        39 LEe~La~Q~~EiqrLl~dNqRLAat---------------hvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~  103 (240)
                      |=+||+.--.=++.|=.+|++|-..               +..+..+|..+++.|..+..-.+.+..+.+.--.++-+=-
T Consensus         9 LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r   88 (312)
T PF00038_consen    9 LNDRLASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLR   88 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHH
Confidence            4466666666666666666666543               3445667777777777777777777888888888888888


Q ss_pred             hhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026318          104 LKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAE  154 (240)
Q Consensus       104 ~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d  154 (240)
                      .|+|.+......+..|+..++.++......|-+|-.++++|..||.-....
T Consensus        89 ~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~  139 (312)
T PF00038_consen   89 RKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQN  139 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999877643

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PRK09039 hypothetical protein; Validated

Probab=97.16  E-value=0.04  Score=51.87  Aligned_cols=146  Identities=20%  Similarity=0.309  Sum_probs=87.8

Q ss_pred             HHHHHHHhhHHHHHHHhhhhhhhhh---hhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318           66 HLQRELTASKDEIHRLGQIIPKLRA---DKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIK  142 (240)
Q Consensus        66 aLrqeL~aaq~El~~l~~~i~~i~a---e~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq  142 (240)
                      -|.+++..-++||..++..|.++-.   =.-.....+=+++..+.+++++.+..|++|.-...   .+.....++.+++.
T Consensus        43 fLs~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~---~~~~~~~~~~~~~~  119 (343)
T PRK09039         43 FLSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLA---ELAGAGAAAEGRAG  119 (343)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhhhhcchHHHHHH
Confidence            3445555555555555444443221   11111222333444444444444444444443322   12222234555555


Q ss_pred             HHHHHHHHHH----HhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHhHHH-H---HHHHHHHHHHH
Q 026318          143 GLTKDVNRLE----AENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLIS-M---AREIEKLRAEL  214 (240)
Q Consensus       143 ~ltqeL~r~~----~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEknlis-M---arEvEKLRaEl  214 (240)
                      .+..+|...+    ....+|-.|+.+|+.||..+..+-++++.-+....+.-++...++..|-. +   +.|++++|.++
T Consensus       120 ~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~~  199 (343)
T PRK09039        120 ELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNRYRSEF  199 (343)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            5555555444    45667889999999999999999999999888889999999999998844 4   45788888887

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=97.13  E-value=0.029  Score=52.05  Aligned_cols=34  Identities=24%  Similarity=0.443  Sum_probs=17.3

Q ss_pred             hhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhh
Q 026318           60 AIDDNTHLQRELTASKDEIHRLGQIIPKLRADKE   93 (240)
Q Consensus        60 LAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e   93 (240)
                      |...+-.|++|.......+..++...+.+...++
T Consensus       154 L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~  187 (325)
T PF08317_consen  154 LEENLELLQEDYAKLDKQLEQLDELLPKLRERKA  187 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555555555555555555555544433

>PRK02224 chromosome segregation protein; Provisional

Probab=96.85  E-value=0.39  Score=49.16  Aligned_cols=79  Identities=23%  Similarity=0.292  Sum_probs=32.7

Q ss_pred             HHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318           65 THLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGL  144 (240)
Q Consensus        65 vaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~l  144 (240)
                      -.+++++...+.++..+...+..++.    ++..+-++...++......+.+..++..+...++++.....++..++..+
T Consensus       209 ~~~~~~l~el~~~i~~~~~~~~~l~~----~l~~l~~~~~el~~~~~~l~~l~~~~~~l~~~i~~~e~~~~~l~~~i~~~  284 (880)
T PRK02224        209 NGLESELAELDEEIERYEEQREQARE----TRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDL  284 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444433333322    22222233344444444444444444444444444444444444444443


Q ss_pred             HHH
Q 026318          145 TKD  147 (240)
Q Consensus       145 tqe  147 (240)
                      ...
T Consensus       285 ~~~  287 (880)
T PRK02224        285 RER  287 (880)
T ss_pred             HHH
Confidence            333

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=96.73  E-value=0.5  Score=46.85  Aligned_cols=68  Identities=19%  Similarity=0.343  Sum_probs=47.4

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----------hHHHHHHHHHHHHHHHHHHHhhh
Q 026318          113 SEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQ-----------LIAMRADIDGIRSELVEARRAFE  180 (240)
Q Consensus       113 ~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qq-----------ip~l~aEid~lrqElqr~Raa~E  180 (240)
                      +..++.||.++..++++....--.|...|.+|..||.+.+.+...           |..|.+|++.++.||.-++....
T Consensus       283 l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~  361 (522)
T PF05701_consen  283 LASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEE  361 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhc
Confidence            567777888888877777777777777777777777777665543           56666677777776666655543

Several sequences in this family are described as being myosin heavy chain-like.

>PRK03918 chromosome segregation protein; Provisional

Probab=96.60  E-value=0.65  Score=47.33  Aligned_cols=76  Identities=22%  Similarity=0.368  Sum_probs=41.1

Q ss_pred             hhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 026318          101 DRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEAR  176 (240)
Q Consensus       101 ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~R  176 (240)
                      +...+++.++...+..+.++..+..+.+.|...-+.+...+..+.+++.....+..++..+..+++.+...+....
T Consensus       221 ~~~~~~~~~l~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l~~el~~l~~~l~~l~~~~~~~~~l~~~~~~~~  296 (880)
T PRK03918        221 EELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYI  296 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444445555555555555555555555555555555555666655555555555555555555544444433

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=96.58  E-value=0.22  Score=46.24  Aligned_cols=173  Identities=18%  Similarity=0.342  Sum_probs=135.5

Q ss_pred             HHHHHHHHHhhhhhhH--------hhHHHHHHHHhhHHHHH-HHhhhhhhhhhhhhHhHHH-HHhhhhhhhhhhhcc---
Q 026318           47 RREMHRIISENRHAID--------DNTHLQRELTASKDEIH-RLGQIIPKLRADKEAHTRE-LFDRGLKLEVELRAS---  113 (240)
Q Consensus        47 ~~EiqrLl~dNqRLAa--------thvaLrqeL~aaq~El~-~l~~~i~~i~ae~e~q~Re-l~ek~~KmEAelRa~---  113 (240)
                      |.|+.+=+.+-+++..        +.-.|=+|...|-.|.+ -|...+..|++=.-++.+. -|+-..++.-.|+.+   
T Consensus        77 c~EL~~~I~egr~~~~~~E~~~~~~nPpLf~EY~~a~~d~r~~m~~q~~~vK~~aRl~aK~~WYeWR~~ll~gl~~~L~~  156 (325)
T PF08317_consen   77 CRELKKYISEGRQIFEEIEEETYESNPPLFREYYTADPDMRLLMDNQFQLVKTYARLEAKKMWYEWRMQLLEGLKEGLEE  156 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566665555555443        33345566644444444 4557777777766666654 477777777777654   


Q ss_pred             --hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHHHHhhhhhhhcchHHH
Q 026318          114 --EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLI-AMRADIDGIRSELVEARRAFEFEKKANEEQI  190 (240)
Q Consensus       114 --e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip-~l~aEid~lrqElqr~Raa~EyEKK~~~e~~  190 (240)
                        +.|+.|...+......|......|...-+.|..++..+++-...+- .=+.++..+++||......++.-|+.-.+.-
T Consensus       157 ~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~  236 (325)
T PF08317_consen  157 NLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQ  236 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              8899999999999999999999999999999999999888766544 3367899999999999999999999999999


Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHhhhcc
Q 026318          191 EQKQAMENNLISMAREIEKLRAELLNTER  219 (240)
Q Consensus       191 Eq~qaMEknlisMarEvEKLRaElanaek  219 (240)
                      .+.+..+..+-.+..+..++.++|+++++
T Consensus       237 ~el~~l~~~i~~~~~~k~~l~~eI~e~~~  265 (325)
T PF08317_consen  237 EELEELEEKIEELEEQKQELLAEIAEAEK  265 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999874

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=96.44  E-value=0.84  Score=49.09  Aligned_cols=48  Identities=29%  Similarity=0.382  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 026318          167 GIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAEL  214 (240)
Q Consensus       167 ~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEknlisMarEvEKLRaEl  214 (240)
                      .++.++..+-..+..-+....+.-.+....+.++..+..++++++..+
T Consensus       867 ~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  914 (1163)
T COG1196         867 ELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERL  914 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333334344444444444444445555555555555555554444

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=96.41  E-value=1.3  Score=44.96  Aligned_cols=164  Identities=23%  Similarity=0.404  Sum_probs=82.9

Q ss_pred             hHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHH
Q 026318           39 LEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRA  118 (240)
Q Consensus        39 LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~  118 (240)
                      |+.+|..-..|-..|+..|..|-..-..|+.++...+.+|.....-...++.+.+    ++.....++..+   .+.++.
T Consensus       141 lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~k----el~~~~e~l~~E---~~~L~~  213 (546)
T PF07888_consen  141 LQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQK----ELTESSEELKEE---RESLKE  213 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH---HHHHHH
Confidence            4556665556666677777666666666666666666666555444444333221    222222222222   234445


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH----HHHH--------HHhhhhhhhcc
Q 026318          119 EVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSE----LVEA--------RRAFEFEKKAN  186 (240)
Q Consensus       119 El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqE----lqr~--------Raa~EyEKK~~  186 (240)
                      +...++..|.+|...-+.|+.+.....+.+.+.+       .+.++++.+.-+    ++..        +.+..++ .-+
T Consensus       214 q~~e~~~ri~~LEedi~~l~qk~~E~e~~~~~lk-------~~~~elEq~~~eLk~rLk~~~~~~~~~~~~~~~~~-~e~  285 (546)
T PF07888_consen  214 QLAEARQRIRELEEDIKTLTQKEKEQEKELDKLK-------ELKAELEQLEAELKQRLKETVVQLKQEETQAQQLQ-QEN  285 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHH-HHH
Confidence            5555555555555555545444433322222222       222222222211    1111        0111111 223


Q ss_pred             hHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 026318          187 EEQIEQKQAMENNLISMAREIEKLRAELLNT  217 (240)
Q Consensus       187 ~e~~Eq~qaMEknlisMarEvEKLRaElana  217 (240)
                      -...+|++.++.-+-+-=++++.|+.||..+
T Consensus       286 e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~  316 (546)
T PF07888_consen  286 EALKEQLRSAQEQLQASQQEAELLRKELSDA  316 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4577888999888888888999999998654

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>TIGR00606 rad50 rad50

Probab=96.40  E-value=0.57  Score=50.91  Aligned_cols=172  Identities=13%  Similarity=0.215  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHHHhhhhhh---HhhHHHH-HHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHHH
Q 026318           44 EIQRREMHRIISENRHAI---DDNTHLQ-RELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAE  119 (240)
Q Consensus        44 a~Q~~EiqrLl~dNqRLA---athvaLr-qeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~E  119 (240)
                      ...-.++...+.+-+.|-   ++...+. .++...+.++..+...+..++.+    +.++--...++..++.+.+.+...
T Consensus       715 ~~~~~~~~~~~e~l~~l~~~~~~~~~l~~~eip~l~~~l~~le~~l~~~~~~----le~~~~~l~~~~~~~~~~esL~~~  790 (1311)
T TIGR00606       715 ESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKND----IEEQETLLGTIMPEEESAKVCLTD  790 (1311)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHH
Confidence            333334555554444442   4444443 56666777776666655555544    444444555666666666555444


Q ss_pred             H---HHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHh----hhhhHHHHHHHHHHHHHHHHH---HHhhh
Q 026318          120 V---VQLRAEVQKLNSSRQELTTQIK---------GLTKDVNRLEAE----NKQLIAMRADIDGIRSELVEA---RRAFE  180 (240)
Q Consensus       120 l---~Q~r~e~q~L~a~RQELt~qvq---------~ltqeL~r~~~d----~qqip~l~aEid~lrqElqr~---Raa~E  180 (240)
                      +   ..+..|+..|...-.+|..+++         .+..++.....+    ...++.+..+.+.+..++..+   -..+.
T Consensus       791 v~~i~r~~~ei~~l~~qie~l~~~l~~~~~~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~  870 (1311)
T TIGR00606       791 VTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELK  870 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4   3334444444333333333222         222333332222    223455666777777777777   44444


Q ss_pred             hhhhcchHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhcc
Q 026318          181 FEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTER  219 (240)
Q Consensus       181 yEKK~~~e~~Eq~qaMEknlisMarEvEKLRaElanaek  219 (240)
                      -++-...+.+.+.+..|..+..+..+++++++++...+.
T Consensus       871 ~~klkl~~~l~~r~~le~~L~el~~el~~l~~~~~~~~~  909 (1311)
T TIGR00606       871 SEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKE  909 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555567778888899999999999999998877654

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=96.39  E-value=0.27  Score=44.06  Aligned_cols=98  Identities=19%  Similarity=0.360  Sum_probs=61.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HH--hhhhhHHHHHHHHHHHHHHHH
Q 026318          115 PVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRL------------------EA--ENKQLIAMRADIDGIRSELVE  174 (240)
Q Consensus       115 ~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~------------------~~--d~qqip~l~aEid~lrqElqr  174 (240)
                      .-..||++...|+.-|.-.-..|..++..|..++...                  +.  ...-++.|+.++|.|+.||..
T Consensus        70 ~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~  149 (202)
T PF06818_consen   70 VCENELQRKKNEAELLREKLGQLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQR  149 (202)
T ss_pred             HhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHH
Confidence            4556666666666555555555555555555555554                  11  123467788888888888885


Q ss_pred             HH-------HhhhhhhhcchHHHH----HHHHHHHhHHHHHHHHHHHHH
Q 026318          175 AR-------RAFEFEKKANEEQIE----QKQAMENNLISMAREIEKLRA  212 (240)
Q Consensus       175 ~R-------aa~EyEKK~~~e~~E----q~qaMEknlisMarEvEKLRa  212 (240)
                      .|       ..||.|+..-.+-=|    --+-+..|||.|-+=-..|-.
T Consensus       150 er~~~e~q~~~Fe~ER~~W~eEKekVi~YQkQLQ~nYvqMy~rn~~LE~  198 (202)
T PF06818_consen  150 ERQRREEQRSSFEQERRTWQEEKEKVIRYQKQLQQNYVQMYQRNQALER  198 (202)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44       589998887554333    235577899999765444433

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=96.37  E-value=0.36  Score=50.55  Aligned_cols=156  Identities=21%  Similarity=0.244  Sum_probs=100.6

Q ss_pred             HhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhh---hhhhhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHH
Q 026318           55 SENRHAIDDNTHLQRELTASKDEIHRLGQIIPK---LRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLN  131 (240)
Q Consensus        55 ~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~---i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~  131 (240)
                      +.+.++......|++||..++.++.....-|..   -..++|..+|+--  ..++       ..+++++.+...|.+++.
T Consensus         3 ~ql~~~q~E~e~L~~ele~~~~~l~~~~~~i~~fwspElkrer~~rkee--~a~l-------~~~k~qlr~~q~e~q~~~   73 (775)
T PF10174_consen    3 AQLERLQRENERLRRELERKQSKLGSSMNSIKTFWSPELKRERALRKEE--AAEL-------SRLKEQLRVTQEENQKAQ   73 (775)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhcccchhhHHHHHHHHHH--HHHH-------HhHHHHHHHHHhhHHHHH
Confidence            445667777788899999999888887766644   3445566555521  2222       245666666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH-------hh----------hhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHH
Q 026318          132 SSRQELTTQIKGLTKDVNRLEA-------EN----------KQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQ  194 (240)
Q Consensus       132 a~RQELt~qvq~ltqeL~r~~~-------d~----------qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~q  194 (240)
                      ..-+.|-.++ ....|+.|.+.       +.          .++--|.+|.|.+..|+..+|.++|       +.-.+..
T Consensus        74 ~ei~~LqeEL-r~q~e~~rL~~~~e~~~~e~e~l~~ld~~~~q~~rl~~E~er~~~El~~lr~~lE-------~~q~~~e  145 (775)
T PF10174_consen   74 EEIQALQEEL-RAQRELNRLQQELEKAQYEFESLQELDKAQEQFERLQAERERLQRELERLRKTLE-------ELQLRIE  145 (775)
T ss_pred             HHHHHHHHHH-HHhhHHHHHHHHhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
Confidence            6666666666 55555554444       33          3455566788888888888886554       3444566


Q ss_pred             HHHHhHHHHHHHHHHHHHHHhhhcccccccccc
Q 026318          195 AMENNLISMAREIEKLRAELLNTERRACGLGKI  227 (240)
Q Consensus       195 aMEknlisMarEvEKLRaElanaekRa~~~~~~  227 (240)
                      +..+-+..---+|+||...|.+.--.+++....
T Consensus       146 ~~q~~l~~~~eei~kL~e~L~~~g~~~~~~~~~  178 (775)
T PF10174_consen  146 TQQQTLDKADEEIEKLQEMLQSKGLSAEAEEED  178 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCcccchhhh
Confidence            677788889999999999996554444444433

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=96.24  E-value=0.76  Score=41.38  Aligned_cols=127  Identities=20%  Similarity=0.296  Sum_probs=68.4

Q ss_pred             HHHhhhhhhHhhHH---HHHHHHhhHHHHHHHhhh----hhhhhhhhhHh---HHHHHhhh----hhhhhhhhcchhhHH
Q 026318           53 IISENRHAIDDNTH---LQRELTASKDEIHRLGQI----IPKLRADKEAH---TRELFDRG----LKLEVELRASEPVRA  118 (240)
Q Consensus        53 Ll~dNqRLAathva---LrqeL~aaq~El~~l~~~----i~~i~ae~e~q---~Rel~ek~----~KmEAelRa~e~lk~  118 (240)
                      |-.=|-|||.-.--   |-++=.....+|..+...    .+.+..--+.+   +|..++.+    .+++.+   .+.++.
T Consensus         6 L~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e---~~~l~~   82 (312)
T PF00038_consen    6 LQSLNDRLASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELE---IDNLKE   82 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH---HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhh---hhhHHH
Confidence            33448888865443   334444444555544433    11222222222   22333322    233332   356777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 026318          119 EVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKA  185 (240)
Q Consensus       119 El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~  185 (240)
                      |+..++.......+.|+.+-.++..+.+++.....   ..-.|..+|.+|+.|+...+..++-|-+.
T Consensus        83 e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~---~r~~le~~i~~L~eEl~fl~~~heeEi~~  146 (312)
T PF00038_consen   83 ELEDLRRKYEEELAERKDLEEELESLRKDLDEETL---ARVDLENQIQSLKEELEFLKQNHEEEIEE  146 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh---hHhHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence            77777777777777888888888888777764432   23445566666666666666666655543

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=96.06  E-value=0.081  Score=43.61  Aligned_cols=74  Identities=20%  Similarity=0.363  Sum_probs=64.9

Q ss_pred             hhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 026318          104 LKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFE  180 (240)
Q Consensus       104 ~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~E  180 (240)
                      -+|-+.||..   -.|+.+++.++..|.+.|..|+.+|-.++.+....++..++++.|+.+++.|++.++-+--.|.
T Consensus        19 e~L~s~lr~~---E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellG   92 (120)
T PF12325_consen   19 ERLQSQLRRL---EGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLG   92 (120)
T ss_pred             HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3556666644   3689999999999999999999999999999999999999999999999999999988776664

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins

Probab=96.02  E-value=0.44  Score=40.65  Aligned_cols=76  Identities=21%  Similarity=0.359  Sum_probs=43.8

Q ss_pred             HHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhh----HhHHHHHhhhhhhhhhhhcc-hhhHHHHHHHH
Q 026318           50 MHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKE----AHTRELFDRGLKLEVELRAS-EPVRAEVVQLR  124 (240)
Q Consensus        50 iqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e----~q~Rel~ek~~KmEAelRa~-e~lk~El~Q~r  124 (240)
                      +..++.+|-..+.+.++-|.++....   ..+.+.++.+++|-.    .++-.+-....+|..|+... ..++.|+.+++
T Consensus        28 l~~~l~~~~~~~~~~~vtk~d~e~~~---~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~~ei~~l~  104 (177)
T PF07798_consen   28 LREVLNDSLEKVAQDLVTKSDLENQE---YLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQELREEINKLR  104 (177)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46678888877778888888877644   344456666666543    33333444444455554444 23555555555


Q ss_pred             HHHH
Q 026318          125 AEVQ  128 (240)
Q Consensus       125 ~e~q  128 (240)
                      +|++
T Consensus       105 a~~k  108 (177)
T PF07798_consen  105 AEVK  108 (177)
T ss_pred             HHHH
Confidence            5554

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=96.02  E-value=1.3  Score=50.74  Aligned_cols=142  Identities=21%  Similarity=0.260  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHHHH
Q 026318           41 EEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEV  120 (240)
Q Consensus        41 e~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El  120 (240)
                      +++..-...+...-.-|-.|=-+...|+||+..+.-|+++..+++..+..-.-..---|.+.-.+.|.=.--.+....|+
T Consensus      1386 ~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~ 1465 (1930)
T KOG0161|consen 1386 QRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQREL 1465 (1930)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444455555566666677888888888888888888766655433222222222222222222222334455666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhh
Q 026318          121 VQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFE  182 (240)
Q Consensus       121 ~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyE  182 (240)
                      .+...++++|...=-++..++.++..+-..++.+...+-.-..|...-.+|++..+..+|.|
T Consensus      1466 r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e 1527 (1930)
T KOG0161|consen 1466 RQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQE 1527 (1930)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666666666666666666666666666666666666666666666666666665

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=96.02  E-value=1.8  Score=46.55  Aligned_cols=37  Identities=19%  Similarity=0.267  Sum_probs=17.6

Q ss_pred             hHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHhhH
Q 026318           39 LEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASK   75 (240)
Q Consensus        39 LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq   75 (240)
                      |++++..-...+..+..+...+-..+-.+...+....
T Consensus       672 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  708 (1163)
T COG1196         672 LEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELR  708 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555555555555544444444444444333333

>PRK02224 chromosome segregation protein; Provisional

Probab=95.99  E-value=1.5  Score=45.07  Aligned_cols=13  Identities=15%  Similarity=0.404  Sum_probs=4.7

Q ss_pred             HHHHHHHHhhHHH
Q 026318           65 THLQRELTASKDE   77 (240)
Q Consensus        65 vaLrqeL~aaq~E   77 (240)
                      ..|+.++...+.+
T Consensus       216 ~el~~~i~~~~~~  228 (880)
T PRK02224        216 AELDEEIERYEEQ  228 (880)
T ss_pred             HHHHHHHHHHHHH
Confidence            3333333333333

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=95.86  E-value=1.7  Score=45.80  Aligned_cols=91  Identities=26%  Similarity=0.311  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhh--------------------hhhhhhhhhHhHHHHHh
Q 026318           42 EIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQI--------------------IPKLRADKEAHTRELFD  101 (240)
Q Consensus        42 ~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~--------------------i~~i~ae~e~q~Rel~e  101 (240)
                      ++..-..+.+.+-.+|+++-.+--+|+-+| -++.|+.+|.+-                    +..+++|+|...+++..
T Consensus        54 ~l~~~k~qlr~~q~e~q~~~~ei~~LqeEL-r~q~e~~rL~~~~e~~~~e~e~l~~ld~~~~q~~rl~~E~er~~~El~~  132 (775)
T PF10174_consen   54 ELSRLKEQLRVTQEENQKAQEEIQALQEEL-RAQRELNRLQQELEKAQYEFESLQELDKAQEQFERLQAERERLQRELER  132 (775)
T ss_pred             HHHhHHHHHHHHHhhHHHHHHHHHHHHHHH-HHhhHHHHHHHHhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            456668889999999999999999999999 999999999875                    34456777777777776


Q ss_pred             hhhhhhhhhhcchhhHHHHHHHHHHHHHHHHH
Q 026318          102 RGLKLEVELRASEPVRAEVVQLRAEVQKLNSS  133 (240)
Q Consensus       102 k~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~  133 (240)
                      -..++|.-=--++.++.++.....++.+|...
T Consensus       133 lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~  164 (775)
T PF10174_consen  133 LRKTLEELQLRIETQQQTLDKADEEIEKLQEM  164 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666655455567777777777777777663

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>TIGR00606 rad50 rad50

Probab=95.86  E-value=0.85  Score=49.59  Aligned_cols=21  Identities=24%  Similarity=0.305  Sum_probs=10.1

Q ss_pred             HHhHHHHHHHHHHHHHHHhhh
Q 026318          197 ENNLISMAREIEKLRAELLNT  217 (240)
Q Consensus       197 EknlisMarEvEKLRaElana  217 (240)
                      +.++-.+-.+++.|..++++.
T Consensus      1027 ~~~l~el~~eI~~l~~~~~~~ 1047 (1311)
T TIGR00606      1027 ENELKEVEEELKQHLKEMGQM 1047 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHhhc
Confidence            444444455555555554443

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>smart00787 Spc7 Spc7 kinetochore protein

Probab=95.74  E-value=0.74  Score=43.25  Aligned_cols=30  Identities=27%  Similarity=0.340  Sum_probs=12.9

Q ss_pred             hhHhhHHHHHHHHhhHHHHHHHhhhhhhhh
Q 026318           60 AIDDNTHLQRELTASKDEIHRLGQIIPKLR   89 (240)
Q Consensus        60 LAathvaLrqeL~aaq~El~~l~~~i~~i~   89 (240)
                      |...+..|+.|....-..+..++...+.++
T Consensus       149 L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~  178 (312)
T smart00787      149 LDENLEGLKEDYKLLMKELELLNSIKPKLR  178 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444444444444333

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=95.66  E-value=2.5  Score=42.94  Aligned_cols=44  Identities=23%  Similarity=0.285  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhh
Q 026318           41 EEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQI   84 (240)
Q Consensus        41 e~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~   84 (240)
                      .+...-..+...|=.++.-|-..--.|+.+|...+.+...|...
T Consensus       150 kE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~  193 (546)
T PF07888_consen  150 KEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQ  193 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333344444555555555555555555555555555444433

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=95.65  E-value=0.85  Score=43.73  Aligned_cols=58  Identities=16%  Similarity=0.304  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhh
Q 026318          124 RAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEF  181 (240)
Q Consensus       124 r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~Ey  181 (240)
                      ......+.+....|..++..+.+++++.+.+.+++|....|+..|..|+.-.+..|+.
T Consensus       316 ~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~  373 (498)
T TIGR03007       316 QIELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQ  373 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444445555556667777788888888888888888888888888888877776653

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=95.60  E-value=1  Score=45.98  Aligned_cols=121  Identities=18%  Similarity=0.319  Sum_probs=100.3

Q ss_pred             hhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 026318           92 KEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSE  171 (240)
Q Consensus        92 ~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqE  171 (240)
                      -+..-|+|++++.-.|++=-..+.+|..-.-++.|+.|+.+.=..+.++-|.+.+.|++.+++   +-..-.|++.|+++
T Consensus       240 l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~E---ie~kEeE~e~lq~~  316 (581)
T KOG0995|consen  240 LKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSE---IEEKEEEIEKLQKE  316 (581)
T ss_pred             HHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence            345678899999877777777789999999999999999999999999999999999999988   55667899999999


Q ss_pred             HHHHHHhhhhhhhcchHHHHHH----HHHHHhHHHHHHHHHHHHHHHhh
Q 026318          172 LVEARRAFEFEKKANEEQIEQK----QAMENNLISMAREIEKLRAELLN  216 (240)
Q Consensus       172 lqr~Raa~EyEKK~~~e~~Eq~----qaMEknlisMarEvEKLRaElan  216 (240)
                      ...++.-||.- +-+++.+|+|    ...++++--|-.+.++|+-++=+
T Consensus       317 ~d~Lk~~Ie~Q-~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~  364 (581)
T KOG0995|consen  317 NDELKKQIELQ-GISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWE  364 (581)
T ss_pred             HHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999886 6677777765    45677777777777777776644

>PRK03918 chromosome segregation protein; Provisional

Probab=95.54  E-value=3.3  Score=42.29  Aligned_cols=11  Identities=36%  Similarity=0.585  Sum_probs=4.5

Q ss_pred             HHHHHHHHHHH
Q 026318          203 MAREIEKLRAE  213 (240)
Q Consensus       203 MarEvEKLRaE  213 (240)
                      ...++.+|+++
T Consensus       403 l~~~i~~l~~~  413 (880)
T PRK03918        403 IEEEISKITAR  413 (880)
T ss_pred             HHHHHHHHHHH
Confidence            33444444443

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=95.48  E-value=1.8  Score=41.67  Aligned_cols=27  Identities=11%  Similarity=0.145  Sum_probs=19.5

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhhhh
Q 026318          155 NKQLIAMRADIDGIRSELVEARRAFEF  181 (240)
Q Consensus       155 ~qqip~l~aEid~lrqElqr~Raa~Ey  181 (240)
                      ...+..+..+++.++.++..+++.+.-
T Consensus       235 ~~~~~~~~~~i~~l~~~i~~~~~~~~~  261 (457)
T TIGR01000       235 STILATIQQQIDQLQKSIASYQVQKAG  261 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            346677778888888888877776653

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=95.44  E-value=2.4  Score=42.16  Aligned_cols=116  Identities=16%  Similarity=0.256  Sum_probs=75.8

Q ss_pred             HhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHH---------
Q 026318           62 DDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNS---------  132 (240)
Q Consensus        62 athvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a---------  132 (240)
                      .-|..--.+|..+++||..+..-..++-.+++.-+-..-+=...++.-.+.++.|..||..+...+.....         
T Consensus       123 ~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~~~a~~eAeee~  202 (522)
T PF05701_consen  123 EQYASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLESAKLAHIEAEEER  202 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555566788899999999988888888887777777777777777777777777776655554443322         


Q ss_pred             ----------------HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 026318          133 ----------------SRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARR  177 (240)
Q Consensus       133 ----------------~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Ra  177 (240)
                                      .-.+-..++..|..++...+.--.++..-..+|+.|+.|+--...
T Consensus       203 ~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~~~~k~Le~kL~~a~~~l~~Lq~El~~~~~  263 (522)
T PF05701_consen  203 IEIAAEREQDAEEWEKELEEAEEELEELKEELEAAKDLESKLAEASAELESLQAELEAAKE  263 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                            122223344555555544444445566667778888887776665

Several sequences in this family are described as being myosin heavy chain-like.

>PRK11637 AmiB activator; Provisional

Probab=95.10  E-value=3.3  Score=39.61  Aligned_cols=85  Identities=15%  Similarity=0.245  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHH----HHHhHHHH
Q 026318          128 QKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQA----MENNLISM  203 (240)
Q Consensus       128 q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qa----MEknlisM  203 (240)
                      ..+...++++..++....++|.   ...+.+-.-+++++.+..++..-++.++-+++..-..+.+.+.    -+.-+..+
T Consensus       162 ~~i~~~d~~~l~~l~~~~~~L~---~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l  238 (428)
T PRK11637        162 GYLNQARQETIAELKQTREELA---AQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSEL  238 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4466666666665555555554   3344455566667777777777777777766663333333322    22233344


Q ss_pred             HHHHHHHHHHHh
Q 026318          204 AREIEKLRAELL  215 (240)
Q Consensus       204 arEvEKLRaEla  215 (240)
                      .++..+|...|+
T Consensus       239 ~~~~~~L~~~I~  250 (428)
T PRK11637        239 RANESRLRDSIA  250 (428)
T ss_pred             HHHHHHHHHHHH
Confidence            444444444443

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=95.06  E-value=1.2  Score=37.59  Aligned_cols=113  Identities=17%  Similarity=0.267  Sum_probs=50.7

Q ss_pred             hhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHH
Q 026318           58 RHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQEL  137 (240)
Q Consensus        58 qRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQEL  137 (240)
                      .++-.+-..+.+.+...++|+..+...+.+...+-+..-...+.-.--++.--...+.++.+......++..|....+++
T Consensus        77 ~~~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~  156 (191)
T PF04156_consen   77 PRLQGELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQKELQDS  156 (191)
T ss_pred             hhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444455555555555555555554444443333222222221111111111233333344444444444445555


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 026318          138 TTQIKGLTKDVNRLEAENKQLIAMRADIDGIRS  170 (240)
Q Consensus       138 t~qvq~ltqeL~r~~~d~qqip~l~aEid~lrq  170 (240)
                      -..++.+..++.+.+.+.+++-...++...+++
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~  189 (191)
T PF04156_consen  157 REEVQELRSQLERLQENLQQLEEKIQELQELLE  189 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            555555555555555555555555555555544

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=94.91  E-value=1.2  Score=46.13  Aligned_cols=94  Identities=30%  Similarity=0.346  Sum_probs=44.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcch--------
Q 026318          116 VRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANE--------  187 (240)
Q Consensus       116 lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~--------  187 (240)
                      +|.|-.++...+++|...||.=...++.|.+-|.       ..-..++.+|.-=.|-.+.|.. |-|+-+.+        
T Consensus       465 lr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~-------eE~~~R~~lEkQL~eErk~r~~-ee~~aar~~~~~~~~r  536 (697)
T PF09726_consen  465 LRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLA-------EERRQRASLEKQLQEERKARKE-EEEKAARALAQAQATR  536 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhH-HHHhhhhccccchhcc
Confidence            4444444444444444444444444444444332       2222334444333333333333 22344443        


Q ss_pred             -HHHHHHHHHHHhHHHHHHHHHHHHHHHhhhccc
Q 026318          188 -EQIEQKQAMENNLISMAREIEKLRAELLNTERR  220 (240)
Q Consensus       188 -e~~Eq~qaMEknlisMarEvEKLRaElanaekR  220 (240)
                       |--|+.+.=.+   .|=.|+.|||.||-..|.+
T Consensus       537 ~e~~e~~r~r~~---~lE~E~~~lr~elk~kee~  567 (697)
T PF09726_consen  537 QECAESCRQRRR---QLESELKKLRRELKQKEEQ  567 (697)
T ss_pred             chhHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence             55554444333   3347888999888766544

; GO: 0016021 integral to membrane

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=94.81  E-value=1.5  Score=41.85  Aligned_cols=117  Identities=20%  Similarity=0.297  Sum_probs=75.0

Q ss_pred             HHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhH-hHH----HHHhhhhhhhhhhhcchhhHHHHHHHHH
Q 026318           51 HRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEA-HTR----ELFDRGLKLEVELRASEPVRAEVVQLRA  125 (240)
Q Consensus        51 qrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~-q~R----el~ek~~KmEAelRa~e~lk~El~Q~r~  125 (240)
                      ...-..|..|..+-..|||.|..+|-|+.-|...+.+.+...+- ..+    +=-+-+..||.==.-.+.+--|++.+--
T Consensus        75 ~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lD  154 (319)
T PF09789_consen   75 SESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLD  154 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445799999999999999999999999999988887754321 111    1111122223222222355556666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHH
Q 026318          126 EVQKLNSSRQELTTQIKGLTKDVNRLEA-ENKQLIAMRADIDGIRSE  171 (240)
Q Consensus       126 e~q~L~a~RQELt~qvq~ltqeL~r~~~-d~qqip~l~aEid~lrqE  171 (240)
                      |.+.|...|...-.+++.|++||.-+-+ |...|.    +||+|.-|
T Consensus       155 EkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~riv----DIDaLi~E  197 (319)
T PF09789_consen  155 EKEELVTERDAYKCKAHRLNHELNYILNGDENRIV----DIDALIME  197 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcc----cHHHHHHH
Confidence            6677777777777889999999986653 444322    45555444

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=94.79  E-value=5.4  Score=40.62  Aligned_cols=57  Identities=25%  Similarity=0.329  Sum_probs=47.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHhHHHHH----HHHHHHHHHH
Q 026318          158 LIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMA----REIEKLRAEL  214 (240)
Q Consensus       158 ip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEknlisMa----rEvEKLRaEl  214 (240)
                      +--|++|+..|+.+|.++|...+-|--+..++--+.|++.+-|--|-    .||+.+|.-.
T Consensus       171 ~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~  231 (546)
T KOG0977|consen  171 LKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKA  231 (546)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            34678999999999999999999999999999999999998887776    6776666543

>PRK04863 mukB cell division protein MukB; Provisional

Probab=94.78  E-value=3.2  Score=46.53  Aligned_cols=159  Identities=16%  Similarity=0.201  Sum_probs=112.4

Q ss_pred             HhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhH-------HHHH----hhhhhhhhhhhcc----hhhHHHHHHHHHH
Q 026318           62 DDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHT-------RELF----DRGLKLEVELRAS----EPVRAEVVQLRAE  126 (240)
Q Consensus        62 athvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~-------Rel~----ek~~KmEAelRa~----e~lk~El~Q~r~e  126 (240)
                      .+|-.|+++...+++-.+.+++.+-.+.-=.+..-       -.++    +..-+++..+.-.    +..+.++.+++.+
T Consensus       935 ~~~e~lr~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~l~~~~~~~~~Le~~Le~iE~~~~~areql~qaq~q 1014 (1486)
T PRK04863        935 EQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQRRAHFSYEDAAEMLAKNSDLNEKLRQRLEQAEQERTRAREQLRQAQAQ 1014 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHhHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            58999999999999999988877665532111000       0000    1111222222222    4556667777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH---------HHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHH
Q 026318          127 VQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIA---------MRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAME  197 (240)
Q Consensus       127 ~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~---------l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaME  197 (240)
                      .++....-..+.+.++.+.+.+..+..+.+.++.         .++.-|.|.+.|...|+-..+=-|.....-..++.++
T Consensus      1015 ~~q~~q~l~slksslq~~~e~L~E~eqe~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~re~EIe~L~ 1094 (1486)
T PRK04863       1015 LAQYNQVLASLKSSYDAKRQMLQELKQELQDLGVPADSGAEERARARRDELHARLSANRSRRNQLEKQLTFCEAEMDNLT 1094 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777777777888888888888777652         4455688999999999988877777778888899999


Q ss_pred             HhHHHHHHHHHHHHHHHhhhccc
Q 026318          198 NNLISMAREIEKLRAELLNTERR  220 (240)
Q Consensus       198 knlisMarEvEKLRaElanaekR  220 (240)
                      +++-..-++.+-+|.++.++..+
T Consensus      1095 kkL~~~~~e~~~~re~I~~aK~~ 1117 (1486)
T PRK04863       1095 KKLRKLERDYHEMREQVVNAKAG 1117 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999887654

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=94.51  E-value=2.1  Score=42.76  Aligned_cols=161  Identities=17%  Similarity=0.232  Sum_probs=95.6

Q ss_pred             hhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhh-hHhHHHHHhhhh----hhhhhhhcchhhHHHHHHHHHHHHHHHH
Q 026318           58 RHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADK-EAHTRELFDRGL----KLEVELRASEPVRAEVVQLRAEVQKLNS  132 (240)
Q Consensus        58 qRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~-e~q~Rel~ek~~----KmEAelRa~e~lk~El~Q~r~e~q~L~a  132 (240)
                      +...=+|+.+-.++...+..|......|+.+.-+. +..+.++-+++-    .||.|..|...+......+...+..+..
T Consensus       245 ~gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e  324 (569)
T PRK04778        245 EGYHLDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKE  324 (569)
T ss_pred             cCCCCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            45556777888888888888888777777666543 223333333333    3455555555555555555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhh-------hhhhcchHHHHHHHHHHHhHHHHHH
Q 026318          133 SRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFE-------FEKKANEEQIEQKQAMENNLISMAR  205 (240)
Q Consensus       133 ~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~E-------yEKK~~~e~~Eq~qaMEknlisMar  205 (240)
                      .-++|..++..+++...-...|...+-.+..+|+.+...+...-..+.       -=++..-+..++...+++....+..
T Consensus       325 ~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e  404 (569)
T PRK04778        325 QNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSE  404 (569)
T ss_pred             HHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555555333344555556666666666655555444443       3344555566666777777777777


Q ss_pred             HHHHHHHHHhhhc
Q 026318          206 EIEKLRAELLNTE  218 (240)
Q Consensus       206 EvEKLRaElanae  218 (240)
                      .+..||.+-..+.
T Consensus       405 ~l~~Lrk~E~eAr  417 (569)
T PRK04778        405 MLQGLRKDELEAR  417 (569)
T ss_pred             HHHHHHHHHHHHH
Confidence            7777777765554

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=94.48  E-value=3.8  Score=37.53  Aligned_cols=69  Identities=16%  Similarity=0.188  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhcc-hHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhcccccccccc
Q 026318          159 IAMRADIDGIRSELVEARRAFEFEKKAN-EEQIEQKQAMENNLISMAREIEKLRAELLNTERRACGLGKI  227 (240)
Q Consensus       159 p~l~aEid~lrqElqr~Raa~EyEKK~~-~e~~Eq~qaMEknlisMarEvEKLRaElanaekRa~~~~~~  227 (240)
                      -..+++++.++.++..++..+.-.+... .+..+.....+.++...-.+++.++..+.+..-+|-..|.+
T Consensus       213 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~i~AP~dG~V  282 (423)
T TIGR01843       213 GRLEAELEVLKRQIDELQLERQQIEQTFREEVLEELTEAQARLAELRERLNKARDRLQRLIIRSPVDGTV  282 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcEEECCCCcEE
Confidence            3344444555555555544444332222 22234455666666677777777777777776666555655

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=94.37  E-value=2.7  Score=42.02  Aligned_cols=173  Identities=16%  Similarity=0.260  Sum_probs=132.0

Q ss_pred             hHHHHHHHHHHHHH----HHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhh--------hHhHHHHHhhhhhh
Q 026318           39 LEEEIEIQRREMHR----IISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADK--------EAHTRELFDRGLKL  106 (240)
Q Consensus        39 LEe~La~Q~~Eiqr----Ll~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~--------e~q~Rel~ek~~Km  106 (240)
                      +...+-.|-.|++.    +..+  .+.=+|..+-.++...+..+......+..+.-+.        ..+|-.|||   .|
T Consensus       220 l~~~~P~ql~eL~~gy~~m~~~--gy~l~~~~i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd---~l  294 (560)
T PF06160_consen  220 LQKEFPDQLEELKEGYREMEEE--GYYLEHLDIEEEIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQLYD---IL  294 (560)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHC--CCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH---HH
Confidence            44455556555543    4443  4666688888888888888888888777765443        223334443   47


Q ss_pred             hhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 026318          107 EVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKAN  186 (240)
Q Consensus       107 EAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~  186 (240)
                      |.|+.|...+...+..+...+..+...=++|..++..+.+-..=...+...+-.+..+|+.+...+......++-.+..|
T Consensus       295 e~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~y  374 (560)
T PF06160_consen  295 EKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPY  374 (560)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCH
Confidence            88999998888888888888888888888888888887777766667888999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q 026318          187 EEQIEQKQAMENNLISMAREIEKLRAELLN  216 (240)
Q Consensus       187 ~e~~Eq~qaMEknlisMarEvEKLRaElan  216 (240)
                      ....+..+.+.++|-.+-.+...+...|.+
T Consensus       375 S~i~~~l~~~~~~l~~ie~~q~~~~~~l~~  404 (560)
T PF06160_consen  375 SEIQEELEEIEEQLEEIEEEQEEINESLQS  404 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999888888888877777766666666555

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=94.35  E-value=1.2  Score=41.59  Aligned_cols=117  Identities=21%  Similarity=0.330  Sum_probs=72.0

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHH
Q 026318          112 ASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIE  191 (240)
Q Consensus       112 a~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~E  191 (240)
                      .......+..++..++++|.....+|..++..+.++-..+..+...+-.-..+++....++-+-++.+..+.   .+..+
T Consensus        37 ~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l---~~~~~  113 (314)
T PF04111_consen   37 EESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLEL---IEFQE  113 (314)
T ss_dssp             -----HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
T ss_pred             hcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence            334555666677777777777777777777777777776666655555555556655666667777776654   44556


Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHhhhcccc-----c-ccccc-chhhhh
Q 026318          192 QKQAMENNLISMAREIEKLRAELLNTERRA-----C-GLGKI-SFFLGA  233 (240)
Q Consensus       192 q~qaMEknlisMarEvEKLRaElanaekRa-----~-~~~~~-g~~~~~  233 (240)
                      ..+.++..+..+...+++||.  .|.=+-+     - ..|++ |+-+|-
T Consensus       114 e~~sl~~q~~~~~~~L~~L~k--tNv~n~~F~I~hdG~fGTINGlRLGr  160 (314)
T PF04111_consen  114 ERDSLKNQYEYASNQLDRLRK--TNVYNDTFHIWHDGPFGTINGLRLGR  160 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHCHHT----TTTTT--EEEETTEEEETTEEE--
T ss_pred             HHHHHHHHHHHHHHHHHHHHh--cCchhceeeEeecCCeeeECCeeecc
Confidence            677788888899999999986  3321111     1 34555 888884

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF13514 AAA_27: AAA domain

Probab=94.29  E-value=9.2  Score=41.09  Aligned_cols=139  Identities=19%  Similarity=0.265  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhH-----hHHHHHhhhhhhhhhhhcch--
Q 026318           42 EIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEA-----HTRELFDRGLKLEVELRASE--  114 (240)
Q Consensus        42 ~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~-----q~Rel~ek~~KmEAelRa~e--  114 (240)
                      .+-.+..|+++=+.+..--..+...|++++..+++++..+...+..++.+...     .+..++.....++++|-+..  
T Consensus       154 ~~l~~l~e~~~~l~~~~~~~~~y~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~ler~~~~~p~~~~~~~l~~~l~~l~~~  233 (1111)
T PF13514_consen  154 QALKELKELERELREAEVRAAEYQELQQALEEAEEELEELRAELKELRAELRRLERLRRAWPLLAELQQLEAELAELGEV  233 (1111)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCc
Confidence            34455666666666677777888889999999999999998888888876554     44457777777777776431  


Q ss_pred             -----hhHHHHHHH--------------HHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 026318          115 -----PVRAEVVQL--------------RAEVQKLNSSRQE---------LTTQIKGLTKDVNRLEAENKQLIAMRADID  166 (240)
Q Consensus       115 -----~lk~El~Q~--------------r~e~q~L~a~RQE---------Lt~qvq~ltqeL~r~~~d~qqip~l~aEid  166 (240)
                           .-...+.++              ..++..|......         ....|..|...+.......+.+|.+..++.
T Consensus       234 ~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~ll~~~~~I~~L~~~~~~~~~~~~dl~~~~~e~~  313 (1111)
T PF13514_consen  234 PDFPEDGAERLEQLEEELAEAQAQLERLQEELAQLEEELDALPVDEELLAHAAEIEALEEQRGEYRKARQDLPRLEAELA  313 (1111)
T ss_pred             CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 122333333              3333333333222         233445556666666777788999999999


Q ss_pred             HHHHHHHHHHHhhh
Q 026318          167 GIRSELVEARRAFE  180 (240)
Q Consensus       167 ~lrqElqr~Raa~E  180 (240)
                      .++.++..+-..+.
T Consensus       314 ~~~~~~~~~~~~lg  327 (1111)
T PF13514_consen  314 ELEAELRALLAQLG  327 (1111)
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999888877776

>smart00787 Spc7 Spc7 kinetochore protein

Probab=94.20  E-value=1.3  Score=41.69  Aligned_cols=174  Identities=19%  Similarity=0.302  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHhhhhhhH--------hhHHHHHHHHhhHHHHHHH-hhhhhhhhhhhhHhHHH-HHhhhhhhhhhh-----
Q 026318           46 QRREMHRIISENRHAID--------DNTHLQRELTASKDEIHRL-GQIIPKLRADKEAHTRE-LFDRGLKLEVEL-----  110 (240)
Q Consensus        46 Q~~EiqrLl~dNqRLAa--------thvaLrqeL~aaq~El~~l-~~~i~~i~ae~e~q~Re-l~ek~~KmEAel-----  110 (240)
                      -|.|+.+=+.|=+++..        +.=.|=+|--.|-.+++.+ ...+..|++=.-.+.+. -|+=.+|+=-.|     
T Consensus        71 sC~EL~~~I~egr~~~~~~E~et~~~nPpLF~EY~~a~~d~r~lm~~Qf~lvK~~aRl~ak~~WYeWR~kllegLk~~L~  150 (312)
T smart00787       71 SCKELKKYISEGRDLFKEIEEETLINNPPLFKEYFSASPDVKLLMDKQFQLVKTFARLEAKKMWYEWRMKLLEGLKEGLD  150 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46677766666555542        2223556665555555543 35555555544444433 244444443333     


Q ss_pred             hcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH-HHHHHHHHHHHHHHHHhhhhhhhcchHH
Q 026318          111 RASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAM-RADIDGIRSELVEARRAFEFEKKANEEQ  189 (240)
Q Consensus       111 Ra~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l-~aEid~lrqElqr~Raa~EyEKK~~~e~  189 (240)
                      +..+.|+.|...+..+.+.+...--+|....+.|..|+..++.-...+-.. ..|++.++.+|...=..++.-++.-.+.
T Consensus       151 ~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~  230 (312)
T smart00787      151 ENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEEL  230 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            233677777777777777777777777777777777666554433322110 2344444444444444444444555555


Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHhhhcc
Q 026318          190 IEQKQAMENNLISMAREIEKLRAELLNTER  219 (240)
Q Consensus       190 ~Eq~qaMEknlisMarEvEKLRaElanaek  219 (240)
                      -+|++..+..+=....+...++.+|+.+++
T Consensus       231 ~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~  260 (312)
T smart00787      231 EEELQELESKIEDLTNKKSELNTEIAEAEK  260 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555555555556666555554

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PHA02562 46 endonuclease subunit; Provisional

Probab=94.15  E-value=5.8  Score=38.31  Aligned_cols=24  Identities=17%  Similarity=0.275  Sum_probs=9.6

Q ss_pred             HHHHHHHhhHHHHHHHhhhhhhhh
Q 026318           66 HLQRELTASKDEIHRLGQIIPKLR   89 (240)
Q Consensus        66 aLrqeL~aaq~El~~l~~~i~~i~   89 (240)
                      .|+.++...++++..+...+..++
T Consensus       185 ~l~~~i~~l~~~i~~~~~~i~~~~  208 (562)
T PHA02562        185 TLDMKIDHIQQQIKTYNKNIEEQR  208 (562)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHH
Confidence            334444444444443333333333

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=94.05  E-value=9.8  Score=42.15  Aligned_cols=29  Identities=10%  Similarity=0.007  Sum_probs=11.6

Q ss_pred             HHHHHHHHHHHHHHhhhhhhHhhHHHHHH
Q 026318           42 EIEIQRREMHRIISENRHAIDDNTHLQRE   70 (240)
Q Consensus        42 ~La~Q~~EiqrLl~dNqRLAathvaLrqe   70 (240)
                      +|+.-..+|..|-..-..+.+...+|.+.
T Consensus       743 ri~el~~~IaeL~~~i~~l~~~l~~l~~r  771 (1353)
T TIGR02680       743 RIAELDARLAAVDDELAELARELRALGAR  771 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444333333333333333

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional

Probab=94.02  E-value=1.2  Score=45.69  Aligned_cols=121  Identities=13%  Similarity=0.233  Sum_probs=72.1

Q ss_pred             hhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhh-----hHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHH
Q 026318           57 NRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADK-----EAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLN  131 (240)
Q Consensus        57 NqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~-----e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~  131 (240)
                      |.....+-.=|.++|...+++|...-..+.+.+.++     +.+...+++++..+++++-......+++.+.-.+   =.
T Consensus       262 ~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~~~~---~h  338 (726)
T PRK09841        262 AAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFREAEISQLYKK---DH  338 (726)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cC
Confidence            344444555566666666766666666666666655     3345556666666665554443333333221100   00


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 026318          132 SSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFE  180 (240)
Q Consensus       132 a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~E  180 (240)
                      -.=+.|..+++.+.++++++++..+++|....++..|..+..-.|..|+
T Consensus       339 P~v~~l~~~~~~L~~~~~~l~~~~~~~p~~e~~~~~L~R~~~~~~~lY~  387 (726)
T PRK09841        339 PTYRALLEKRQTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEAGRAVYL  387 (726)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence            0113444566777888888888888899888888888777777665553

>PRK04863 mukB cell division protein MukB; Provisional

Probab=93.95  E-value=14  Score=41.81  Aligned_cols=180  Identities=14%  Similarity=0.224  Sum_probs=136.3

Q ss_pred             CCccchHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhh---------------------hh
Q 026318           34 FHPMTLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRA---------------------DK   92 (240)
Q Consensus        34 p~p~~LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~a---------------------e~   92 (240)
                      |-|+.-=..+..+..+|.+=++|   +-+++...++.+..++.-|..|+..++.+.-                     +-
T Consensus       833 ~~pe~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a  909 (1486)
T PRK04863        833 ADPEAELRQLNRRRVELERALAD---HESQEQQQRSQLEQAKEGLSALNRLLPRLNLLADETLADRVEEIREQLDEAEEA  909 (1486)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhchhhhhcCCccHHHHHHHHHHHHHHHHHH
Confidence            44432223444566666666654   5677888888888888888888887776532                     12


Q ss_pred             hHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HhhhhhHH
Q 026318           93 EAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLE------------AENKQLIA  160 (240)
Q Consensus        93 e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~------------~d~qqip~  160 (240)
                      ..+++.....+..+|.++.....--.+..+++.+++......|.+..++-.|+.=.++..            .+..-.+.
T Consensus       910 ~~y~~~~~~~L~qLE~~l~~L~~Dp~~~e~lr~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~l~~~~~~~~~  989 (1486)
T PRK04863        910 KRFVQQHGNALAQLEPIVSVLQSDPEQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQRRAHFSYEDAAEMLAKNSDLNEK  989 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHhHhhcchhhhHH
Confidence            234566667777788777777666678888889999999999999988888876555432            23344789


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q 026318          161 MRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLN  216 (240)
Q Consensus       161 l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEknlisMarEvEKLRaElan  216 (240)
                      |+..|..+.++...+|..+.--++.+...-...+..++++-.-..+++++..++.+
T Consensus       990 Le~~Le~iE~~~~~areql~qaq~q~~q~~q~l~slksslq~~~e~L~E~eqe~~~ 1045 (1486)
T PRK04863        990 LRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQD 1045 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999988888888899999999999999999998865

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=93.77  E-value=7.7  Score=38.38  Aligned_cols=152  Identities=19%  Similarity=0.236  Sum_probs=89.6

Q ss_pred             HHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhc------chhhHHHHHHHHHHH
Q 026318           54 ISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRA------SEPVRAEVVQLRAEV  127 (240)
Q Consensus        54 l~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa------~e~lk~El~Q~r~e~  127 (240)
                      +.+..-+..-.--++.++...+.|+.--+.-+..+-..+|.-|-.|=+++..  ..+..      .+.++.|..+++.++
T Consensus       213 l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~--~~~~~~~~~~el~~l~~E~~~~~ee~  290 (511)
T PF09787_consen  213 LRESGELQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLE--EGFDSSTNSIELEELKQERDHLQEEI  290 (511)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccc--cccccccchhcchhhHHHHHHHHHHH
Confidence            3333444444455666666666666666666666667777777776664444  12222      467888999988888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---------hHHH--HHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHH
Q 026318          128 QKLNSSRQELTTQIKGLTKDVNRLEAENKQ---------LIAM--RADIDGIRSELVEARRAFEFEKKANEEQIEQKQAM  196 (240)
Q Consensus       128 q~L~a~RQELt~qvq~ltqeL~r~~~d~qq---------ip~l--~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaM  196 (240)
                      +.|...=+.|..+++.+..++.....-.++         -|.+  .+|+.-+.+|+.+.+...-     +...--+.+..
T Consensus       291 ~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~~l~~~el~~~~ee~~-----~~~s~~~~k~~  365 (511)
T PF09787_consen  291 QLLERQIEQLRAELQDLEAQLEGEQESFREQPQELSQQLEPELTTEAELRLYYQELYHYREELS-----RQKSPLQLKLK  365 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHH-----HhcChHHHHHH
Confidence            888888777777777766665542211111         1111  3344455555555543222     22223345555


Q ss_pred             HHhHHHHHHHHHHHHHHHhhh
Q 026318          197 ENNLISMAREIEKLRAELLNT  217 (240)
Q Consensus       197 EknlisMarEvEKLRaElana  217 (240)
                      +|     -.|+.|||..+.+.
T Consensus       366 ~k-----e~E~q~lr~~l~~~  381 (511)
T PF09787_consen  366 EK-----ESEIQKLRNQLSAR  381 (511)
T ss_pred             HH-----HHHHHHHHHHHHHH
Confidence            55     68999999998774

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=93.68  E-value=2  Score=38.63  Aligned_cols=77  Identities=30%  Similarity=0.417  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHHHHhh----hhhHHHHHHHHHHHHHHHHHH----HhhhhhhhcchHHHHHHHHHHHhHHHHHHHHHHHH
Q 026318          140 QIKGLTKDVNRLEAEN----KQLIAMRADIDGIRSELVEAR----RAFEFEKKANEEQIEQKQAMENNLISMAREIEKLR  211 (240)
Q Consensus       140 qvq~ltqeL~r~~~d~----qqip~l~aEid~lrqElqr~R----aa~EyEKK~~~e~~Eq~qaMEknlisMarEvEKLR  211 (240)
                      .+.....+|++..++.    .++..+.+|+-.|+.++..+.    ..+-+-  ..-+.-.+...=...+-++-+|||.||
T Consensus        67 ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~~~~~~~~~~l~--~~deak~~~~~~~~~~~~l~~e~erL~  144 (202)
T PF06818_consen   67 ELEVCENELQRKKNEAELLREKLGQLEAELAELREELACAGRLKRQCQLLS--ESDEAKAQRQAGEDELGSLRREVERLR  144 (202)
T ss_pred             hHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhhccchhhhcccc--ccchhHHhhccccccchhHHHHHHHHH
Confidence            4444455555555554    344555556666666655541    000000  111112222223455778999999999


Q ss_pred             HHHhhhc
Q 026318          212 AELLNTE  218 (240)
Q Consensus       212 aElanae  218 (240)
                      +||..-.
T Consensus       145 aeL~~er  151 (202)
T PF06818_consen  145 AELQRER  151 (202)
T ss_pred             HHHHHHH
Confidence            9998643

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=93.64  E-value=15  Score=42.64  Aligned_cols=49  Identities=24%  Similarity=0.367  Sum_probs=25.2

Q ss_pred             hHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhh
Q 026318           39 LEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPK   87 (240)
Q Consensus        39 LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~   87 (240)
                      |++++..+..-+..|..+=.-|=.-|--|..+|+..++.+..++-...+
T Consensus       969 l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~k 1017 (1930)
T KOG0161|consen  969 LEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAK 1017 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444455444444455555555666666555555444433

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=93.50  E-value=8.9  Score=38.24  Aligned_cols=169  Identities=19%  Similarity=0.252  Sum_probs=103.8

Q ss_pred             HHHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHHHHH----HH
Q 026318           48 REMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVV----QL  123 (240)
Q Consensus        48 ~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~----Q~  123 (240)
                      .|.+.--.|-+-.-...-++++++..|++|+.++.....+++++    +--|.+...++|+++.++-+=.++|+    |+
T Consensus       109 ~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtr----l~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Ql  184 (499)
T COG4372         109 SELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTR----LKTLAEQRRQLEAQAQSLQASQKQLQASATQL  184 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36666666666666677889999999999999999999988875    56688999999999998766666665    44


Q ss_pred             HHHHHHHHHH-------HHHHH---HHHHHHHHHHHHHHHhhhhhHH----HHHHHHHHHHHHHHHHHhhhhhhhcchHH
Q 026318          124 RAEVQKLNSS-------RQELT---TQIKGLTKDVNRLEAENKQLIA----MRADIDGIRSELVEARRAFEFEKKANEEQ  189 (240)
Q Consensus       124 r~e~q~L~a~-------RQELt---~qvq~ltqeL~r~~~d~qqip~----l~aEid~lrqElqr~Raa~EyEKK~~~e~  189 (240)
                      .+++..|...       -|+|.   ..+|..++||++..+-.||...    ..+-|+..-+++- +|..      --.+.
T Consensus       185 k~~~~~L~~r~~~ieQ~~~~la~r~~a~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~ia-ar~e------~I~~r  257 (499)
T COG4372         185 KSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIA-ARAE------QIRER  257 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHH------HHHHH
Confidence            4444443321       11221   2466777777776666555433    3334444444432 1111      11233


Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHhh-hcccccccccc
Q 026318          190 IEQKQAMENNLISMAREIEKLRAELLN-TERRACGLGKI  227 (240)
Q Consensus       190 ~Eq~qaMEknlisMarEvEKLRaElan-aekRa~~~~~~  227 (240)
                      -++.|..|.-..-.-+||+.|-+=... .+-|...+++.
T Consensus       258 e~~lq~lEt~q~~leqeva~le~yyQ~y~~lr~q~~a~~  296 (499)
T COG4372         258 ERQLQRLETAQARLEQEVAQLEAYYQAYVRLRQQAAATQ  296 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            456666777777777788777654322 34444444433

>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure

Probab=93.03  E-value=0.73  Score=34.15  Aligned_cols=43  Identities=23%  Similarity=0.409  Sum_probs=32.4

Q ss_pred             hhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318          105 KLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKD  147 (240)
Q Consensus       105 KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqe  147 (240)
                      -|++|+||-..+..||..+++....+..--||--.+.+.|..+
T Consensus         5 aL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~e   47 (61)
T PF08826_consen    5 ALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQE   47 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4799999999999999999988777766655555555555444

It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.

>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions []

Probab=92.90  E-value=2.7  Score=32.93  Aligned_cols=78  Identities=21%  Similarity=0.288  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHhHHHHH
Q 026318          125 AEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMA  204 (240)
Q Consensus       125 ~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEknlisMa  204 (240)
                      ..+.++...-.-|..++..++.|  +.++|.+...++ --.|+|..|+..++..+.    .+.+..+|++.+|+++++-.
T Consensus        17 ~~~~~k~~~~~~lE~k~~rl~~E--k~kadqkyfa~m-r~~d~l~~e~k~L~~~~~----Ks~~~i~~L~~~E~~~~~~l   89 (96)
T PF08647_consen   17 EQADKKVKELTILEQKKLRLEAE--KAKADQKYFAAM-RSKDALDNEMKKLNTQLS----KSSELIEQLKETEKEFVRKL   89 (96)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH-HhHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444444  334454444444 458888888888888774    56788999999999999998


Q ss_pred             HHHHH
Q 026318          205 REIEK  209 (240)
Q Consensus       205 rEvEK  209 (240)
                      .+.||
T Consensus        90 ~~~Ek   94 (96)
T PF08647_consen   90 KNLEK   94 (96)
T ss_pred             HHhhc
Confidence            88876

>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins

Probab=92.89  E-value=5  Score=34.25  Aligned_cols=26  Identities=27%  Similarity=0.341  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHHHhhhc--ccccccccc
Q 026318          202 SMAREIEKLRAELLNTE--RRACGLGKI  227 (240)
Q Consensus       202 sMarEvEKLRaElanae--kRa~~~~~~  227 (240)
                      -+..||..||++++++.  .-=|..|.+
T Consensus       135 ki~~ei~~lr~~iE~~K~~~lr~~~g~i  162 (177)
T PF07798_consen  135 KIDTEIANLRTEIESLKWDTLRWLVGVI  162 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46777778888887643  334766665

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=92.85  E-value=6.9  Score=35.13  Aligned_cols=40  Identities=25%  Similarity=0.422  Sum_probs=28.0

Q ss_pred             HHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhh
Q 026318           50 MHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLR   89 (240)
Q Consensus        50 iqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~   89 (240)
                      |..|=.-|++|++..-.|++.+..+.+.=.+|..-|.+++
T Consensus        10 v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~   49 (193)
T PF14662_consen   10 VEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLR   49 (193)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445567888888888888887777777666666666554

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=92.83  E-value=7.7  Score=35.65  Aligned_cols=136  Identities=19%  Similarity=0.292  Sum_probs=76.5

Q ss_pred             HHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhh----------hHhHHHHHhhhhhhhhhhhcchhhHH
Q 026318           49 EMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADK----------EAHTRELFDRGLKLEVELRASEPVRA  118 (240)
Q Consensus        49 EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~----------e~q~Rel~ek~~KmEAelRa~e~lk~  118 (240)
                      .||.|-..+-||+.-.-.-+.+|.+++-|+-+++..+.+++.+.          +..++++=+|+.+.|-.+-++ .=-.
T Consensus        11 ~iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v-~~~~   89 (239)
T COG1579          11 AIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAV-KDER   89 (239)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccHH
Confidence            34455555555555444555555555555555554444443332          344566667777777766333 2223


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchH
Q 026318          119 EVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEE  188 (240)
Q Consensus       119 El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e  188 (240)
                      |+..+-.|++.+..-.-.|..++..+..++++...   ++-.++..+..++..+--++..+|.|=.+--+
T Consensus        90 e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~---~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e  156 (239)
T COG1579          90 ELRALNIEIQIAKERINSLEDELAELMEEIEKLEK---EIEDLKERLERLEKNLAEAEARLEEEVAEIRE  156 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55666666666666666666666666666554433   24556666666666666666666665444333

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins

Probab=92.73  E-value=3.7  Score=43.03  Aligned_cols=133  Identities=26%  Similarity=0.336  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHHHHhhhhhhHhhHHHHHH--HHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhh-hhcchhhHHH
Q 026318           43 IEIQRREMHRIISENRHAIDDNTHLQRE--LTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVE-LRASEPVRAE  119 (240)
Q Consensus        43 La~Q~~EiqrLl~dNqRLAathvaLrqe--L~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAe-lRa~e~lk~E  119 (240)
                      |.-|-.||+||=.+=+-|-.+-  |+|-  |.+--.||.++..+-..-++|.| ..|.   ..++-|.- .+.-|..+.|
T Consensus        68 is~qlqE~rrle~e~~~lre~s--l~qkmrLe~qa~Ele~l~~ae~agraEae-~Lra---ala~ae~~R~~lEE~~q~E  141 (739)
T PF07111_consen   68 ISRQLQELRRLEEEVRALRETS--LQQKMRLEAQAEELEALARAEKAGRAEAE-ELRA---ALAGAEVVRKNLEEGSQRE  141 (739)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHhhhhhHH-HHHH---HHhhHHHHHHhhHHHHHHH
Confidence            5566688888887776555542  2222  33333477777655554555532 1121   11111110 0111344455


Q ss_pred             HHHHHH----HHHHHHHHHH----HHHHHHHHHHHHHHHHH----HhhhhhHHHHHHHHHHHHHHHHHHHhhhh
Q 026318          120 VVQLRA----EVQKLNSSRQ----ELTTQIKGLTKDVNRLE----AENKQLIAMRADIDGIRSELVEARRAFEF  181 (240)
Q Consensus       120 l~Q~r~----e~q~L~a~RQ----ELt~qvq~ltqeL~r~~----~d~qqip~l~aEid~lrqElqr~Raa~Ey  181 (240)
                      |..++.    ++..|+.+=|    .|+.+++.|.++|.-..    .+.+.+.....|.|.|++++-.....||-
T Consensus       142 Lee~q~~Hqeql~~Lt~aHq~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~  215 (739)
T PF07111_consen  142 LEEAQRLHQEQLSSLTQAHQEALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEA  215 (739)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            544332    2334444333    47778888888765444    46778888888999999988777766664

The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=92.53  E-value=7.4  Score=37.02  Aligned_cols=160  Identities=16%  Similarity=0.247  Sum_probs=83.0

Q ss_pred             HHH-HHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhh------hh----hhh--Hh---------HHHHHhhhhh
Q 026318           48 REM-HRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKL------RA----DKE--AH---------TRELFDRGLK  105 (240)
Q Consensus        48 ~Ei-qrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i------~a----e~e--~q---------~Rel~ek~~K  105 (240)
                      +.| |.|+..|+-|....-.|-++|.++.+.|..|++-+..=      -+    |.+  ..         ....+.+...
T Consensus        82 A~iGqsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~~kdeLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~  161 (306)
T PF04849_consen   82 ARIGQSLLEQNQDLSERNEALEEQLGAALEQVEQLRHELSMKDELLQIYSNDDEESEPESSESTPLRRNESSLSSQKCIQ  161 (306)
T ss_pred             HHHhHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccccCCCccccccccccccccchh
Confidence            456 89999999999888999999999988888887654310      00    000  00         0000111222


Q ss_pred             hhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 026318          106 LEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEA-ENKQLIAMRADIDGIRSELVEARRAFEFEKK  184 (240)
Q Consensus       106 mEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~-d~qqip~l~aEid~lrqElqr~Raa~EyEKK  184 (240)
                      +++==+-.-.+..|-.++|.|+.+|...--.+-.+-|.|..|..+.-+ -++||..|..||..-..|+       ..-..
T Consensus       162 le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~-------~rQQE  234 (306)
T PF04849_consen  162 LEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEEN-------RRQQE  234 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHH-------HHHHH
Confidence            232223333455677777777777776666666666666555433222 2334444444333222222       22222


Q ss_pred             cchHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 026318          185 ANEEQIEQKQAMENNLISMAREIEKLRAEL  214 (240)
Q Consensus       185 ~~~e~~Eq~qaMEknlisMarEvEKLRaEl  214 (240)
                      --..++-|.-..++.+=..+-|-|+|..-|
T Consensus       235 EIt~LlsqivdlQ~r~k~~~~EnEeL~q~L  264 (306)
T PF04849_consen  235 EITSLLSQIVDLQQRCKQLAAENEELQQHL  264 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            223344444444444444444444444443

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=92.35  E-value=3.8  Score=33.80  Aligned_cols=69  Identities=20%  Similarity=0.416  Sum_probs=60.4

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 026318          112 ASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFE  180 (240)
Q Consensus       112 a~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~E  180 (240)
                      -++.|.+.+.+.-+|+..|...-.-|..+=..+++|+.++-.++..+-+...+++.|+.++..+..-++
T Consensus        17 ~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~   85 (120)
T PF12325_consen   17 LVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQ   85 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457888999999999999999999999999999999999999999999999999999999987766544

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=91.82  E-value=4.3  Score=41.32  Aligned_cols=78  Identities=21%  Similarity=0.303  Sum_probs=49.2

Q ss_pred             HHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhc----chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318           75 KDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRA----SEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNR  150 (240)
Q Consensus        75 q~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa----~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r  150 (240)
                      +.++...-..+..+++|-..    +--++.+||.|+.-    ..-++.+|.-+|++...=...|.++..++|.|.+||+=
T Consensus       140 re~~~~~~~~l~~leAe~~~----~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f  215 (546)
T KOG0977|consen  140 REKLDDYLSRLSELEAEINT----LKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAF  215 (546)
T ss_pred             HHHHHHHhhhhhhhhhHHHH----HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            33333334444444444333    45566677766643    25566666666666666677899999999999999987


Q ss_pred             HHHhhh
Q 026318          151 LEAENK  156 (240)
Q Consensus       151 ~~~d~q  156 (240)
                      ......
T Consensus       216 ~~~~h~  221 (546)
T KOG0977|consen  216 LKRIHK  221 (546)
T ss_pred             HHhccH
Confidence            664443

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=91.73  E-value=25  Score=39.07  Aligned_cols=15  Identities=20%  Similarity=0.503  Sum_probs=7.6

Q ss_pred             hHHHHHHHHHHHHHH
Q 026318           39 LEEEIEIQRREMHRI   53 (240)
Q Consensus        39 LEe~La~Q~~EiqrL   53 (240)
                      |+++|+.-..+|..|
T Consensus       754 L~~~i~~l~~~l~~l  768 (1353)
T TIGR02680       754 VDDELAELARELRAL  768 (1353)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            455555554444444

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=91.71  E-value=15  Score=37.41  Aligned_cols=40  Identities=28%  Similarity=0.429  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 026318          141 IKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFE  180 (240)
Q Consensus       141 vq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~E  180 (240)
                      ...+...++..++...++|....|+..|..|..-.|..|+
T Consensus       354 ~~~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~  393 (754)
T TIGR01005       354 ESQLVSDVNQLKAASAQAGEQQVDLDALQRDAAAKRQLYE  393 (754)
T ss_pred             HHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHH
Confidence            3455556666666666666666666666666666666554

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=91.71  E-value=7.1  Score=32.73  Aligned_cols=128  Identities=23%  Similarity=0.244  Sum_probs=92.4

Q ss_pred             HHHHHHHhhHHHHHHHhhhhhhh---hhhhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318           66 HLQRELTASKDEIHRLGQIIPKL---RADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIK  142 (240)
Q Consensus        66 aLrqeL~aaq~El~~l~~~i~~i---~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq  142 (240)
                      +||-|...+..=...+..-+..+   ....|.+|..|-.|+.-+|.+|-.++.==.++...-.+..+..+.=.-|+.+|+
T Consensus         4 ~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq   83 (143)
T PF12718_consen    4 ALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQ   83 (143)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHH
Confidence            45555555554444444333333   346788889999999999998876655545555554555555444457999999


Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHH
Q 026318          143 GLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQK  193 (240)
Q Consensus       143 ~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~  193 (240)
                      .|-.+|..+...+...-.-..+.|.-=.++-|-..++|.+....-..|+.+
T Consensus        84 ~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel  134 (143)
T PF12718_consen   84 LLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEEL  134 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            999999999999999998888998888889999999988877666666654

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=91.66  E-value=16  Score=37.59  Aligned_cols=149  Identities=17%  Similarity=0.305  Sum_probs=88.9

Q ss_pred             HHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHH---HHHhhhhhhhhhhhcchh------hHHHHHHHHHHHHHHHHHHH
Q 026318           65 THLQRELTASKDEIHRLGQIIPKLRADKEAHTR---ELFDRGLKLEVELRASEP------VRAEVVQLRAEVQKLNSSRQ  135 (240)
Q Consensus        65 vaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~R---el~ek~~KmEAelRa~e~------lk~El~Q~r~e~q~L~a~RQ  135 (240)
                      ..|+.+-+..++.++.|+.-+..++.|++..++   +|=..+.+|...+....+      ....-.++..++..|.....
T Consensus        18 ~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE   97 (617)
T PF15070_consen   18 QQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELE   97 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHH
Confidence            467888888888999999888899988886544   444455555555442210      11122456666666666666


Q ss_pred             HHHHHHHHHHHHHHHHH----HhhhhhHHHHHHHHHHH----------HHHHHHHHhhhhhhhcchHHHHHHHHHHHhHH
Q 026318          136 ELTTQIKGLTKDVNRLE----AENKQLIAMRADIDGIR----------SELVEARRAFEFEKKANEEQIEQKQAMENNLI  201 (240)
Q Consensus       136 ELt~qvq~ltqeL~r~~----~d~qqip~l~aEid~lr----------qElqr~Raa~EyEKK~~~e~~Eq~qaMEknli  201 (240)
                      .|.++++...++-+.+.    .--.+|-.+.-.++.+.          ..++.-++++----.-|-++-+|+..|+..||
T Consensus        98 ~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv  177 (617)
T PF15070_consen   98 SLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFV  177 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            66666666544333221    12233333333333332          33333344444444567888999999999999


Q ss_pred             HHHHH----HHHHHHH
Q 026318          202 SMARE----IEKLRAE  213 (240)
Q Consensus       202 sMarE----vEKLRaE  213 (240)
                      .|..+    ..+|-+|
T Consensus       178 ~ltne~~elt~~lq~E  193 (617)
T PF15070_consen  178 KLTNENMELTSALQSE  193 (617)
T ss_pred             HHHHhhhHhhHHHHHH
Confidence            99887    4555554

>PRK10884 SH3 domain-containing protein; Provisional

Probab=91.60  E-value=2.6  Score=37.49  Aligned_cols=14  Identities=7%  Similarity=0.245  Sum_probs=7.1

Q ss_pred             HHHHHHHHHHHHhh
Q 026318          203 MAREIEKLRAELLN  216 (240)
Q Consensus       203 MarEvEKLRaElan  216 (240)
                      .-.|++.|++++..
T Consensus       151 ~~~~~~~l~~~~~~  164 (206)
T PRK10884        151 AQKKVDAANLQLDD  164 (206)
T ss_pred             HHHHHHHHHHHHHH
Confidence            44455555555444

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=91.59  E-value=20  Score=39.85  Aligned_cols=26  Identities=4%  Similarity=0.153  Sum_probs=13.6

Q ss_pred             HHHHHHhhhhhhHhhHHHHHHHHhhH
Q 026318           50 MHRIISENRHAIDDNTHLQRELTASK   75 (240)
Q Consensus        50 iqrLl~dNqRLAathvaLrqeL~aaq   75 (240)
                      ++++.++=++++..|..|.+.++..+
T Consensus       822 l~~~~~~~k~~~~~~~~l~~~i~~~E  847 (1293)
T KOG0996|consen  822 LEKLTASVKRLAELIEYLESQIAELE  847 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555555555555555544433

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=91.54  E-value=24  Score=38.52  Aligned_cols=100  Identities=26%  Similarity=0.356  Sum_probs=51.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHH-HH
Q 026318          114 EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQI-EQ  192 (240)
Q Consensus       114 e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~-Eq  192 (240)
                      ..++.++..+.....-|.+.=+++..+-..+.+.|....  +.+...+.++++.++.+....+..++-+-.+--+.+ ++
T Consensus       355 ~~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l~~~~--~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~~~~~~  432 (1201)
T PF12128_consen  355 PEWRNELENLQEQLDLLTSKHQDIESKYNKLKQKLEEAF--NRQQERLQAQQDEIREEKAERREQIEEEYQALEQELRQQ  432 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444444444443333  346778888888888888888777765443332222 23


Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHhhhc
Q 026318          193 KQAMENNLISMAREIEKLRAELLNTE  218 (240)
Q Consensus       193 ~qaMEknlisMarEvEKLRaElanae  218 (240)
                      .+....   ....+..++..+++...
T Consensus       433 ~~~~~~---~~~~~~~~~~~~l~~l~  455 (1201)
T PF12128_consen  433 SQEQLE---ELQEQREQLKSELAELK  455 (1201)
T ss_pred             HHHHHH---HHHHHHHHHHHHHHHHH
Confidence            443333   23344444444444433

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=91.51  E-value=11  Score=34.61  Aligned_cols=66  Identities=20%  Similarity=0.275  Sum_probs=33.9

Q ss_pred             HHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318           69 RELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQI  141 (240)
Q Consensus        69 qeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qv  141 (240)
                      .++....+...-......++++|.+.=-..+.+.-..       .+.++.++.+..+|++++..-...+..+.
T Consensus        17 ~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e-------~e~le~qv~~~e~ei~~~r~r~~~~e~kl   82 (239)
T COG1579          17 LEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIE-------LEDLENQVSQLESEIQEIRERIKRAEEKL   82 (239)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333444444444433333333333       34777777777777777766655555544

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=91.32  E-value=12  Score=34.41  Aligned_cols=115  Identities=19%  Similarity=0.249  Sum_probs=54.0

Q ss_pred             hhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhHh------HHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHH
Q 026318           58 RHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAH------TRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLN  131 (240)
Q Consensus        58 qRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q------~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~  131 (240)
                      ..+.+....|..++...+.++..+...+..++++....      ...|+++..-...++   +..+.++.+++.++..+.
T Consensus       140 ~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~~~~~~L~~~g~is~~~~---~~~~~~~~~~~~~l~~~~  216 (423)
T TIGR01843       140 STLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELEARRKLKEKGLVSRLEL---LELERERAEAQGELGRLE  216 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHH---HHHHHHHHHHHhHHHHHH
Confidence            33444555566666666666666555555544433221      223444433333322   245555555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 026318          132 SSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARR  177 (240)
Q Consensus       132 a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Ra  177 (240)
                      +....+..++..+..++.....+  ..-....++..++.++..+++
T Consensus       217 ~~l~~~~~~l~~~~~~~~~~~~~--~~~~~~~~l~~~~~~l~~~~~  260 (423)
T TIGR01843       217 AELEVLKRQIDELQLERQQIEQT--FREEVLEELTEAQARLAELRE  260 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555554433222  222333444444444444433

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=91.26  E-value=6.9  Score=37.09  Aligned_cols=102  Identities=20%  Similarity=0.332  Sum_probs=75.2

Q ss_pred             HHHHhhhhhhhhhhhcch---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhHHHHHHHHHHH
Q 026318           97 RELFDRGLKLEVELRASE---PVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAE----NKQLIAMRADIDGIR  169 (240)
Q Consensus        97 Rel~ek~~KmEAelRa~e---~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d----~qqip~l~aEid~lr  169 (240)
                      +.|++++..++-++....   ....++.-+.++++.|...+.++..+|+.+.++.+..+-+    .+.+..++.+.|.++
T Consensus       134 ~~lvq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~h  213 (294)
T COG1340         134 RELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELH  213 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567888888888877765   3445555666777777777777777777777777666544    355778999999999


Q ss_pred             HHHHHHHHhhhhhhhcchHHHHHHHHHHH
Q 026318          170 SELVEARRAFEFEKKANEEQIEQKQAMEN  198 (240)
Q Consensus       170 qElqr~Raa~EyEKK~~~e~~Eq~qaMEk  198 (240)
                      .++...+..++-....+.....-....++
T Consensus       214 e~~ve~~~~~~e~~ee~~~~~~elre~~k  242 (294)
T COG1340         214 EEFVELSKKIDELHEEFRNLQNELRELEK  242 (294)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            99999999888877777666655555555

>PRK09039 hypothetical protein; Validated

Probab=91.19  E-value=13  Score=35.25  Aligned_cols=16  Identities=25%  Similarity=0.364  Sum_probs=9.4

Q ss_pred             chHHHHHHHHHHHHHH
Q 026318           38 TLEEEIEIQRREMHRI   53 (240)
Q Consensus        38 ~LEe~La~Q~~EiqrL   53 (240)
                      .|.+.|..+..|+.+|
T Consensus        43 fLs~~i~~~~~eL~~L   58 (343)
T PRK09039         43 FLSREISGKDSALDRL   58 (343)
T ss_pred             HHHHHHhhHHHHHHHH
Confidence            4566666666665555

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=91.06  E-value=35  Score=39.52  Aligned_cols=199  Identities=20%  Similarity=0.289  Sum_probs=111.6

Q ss_pred             cchHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhh--------------hhhhHhHHHHHhh
Q 026318           37 MTLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLR--------------ADKEAHTRELFDR  102 (240)
Q Consensus        37 ~~LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~--------------ae~e~q~Rel~ek  102 (240)
                      ..|.+-|..+.+||..|-.+|.+|-.--..+++-+--.+.=++....--.+.+              .+...=-++|--+
T Consensus       125 r~l~~~le~~~~ele~l~~~n~~l~~ql~ss~~~~~e~e~r~~e~~s~~vs~q~k~~rl~QEksll~s~~~wL~~eL~~~  204 (1822)
T KOG4674|consen  125 RQLMELLERQKAELEALESENKDLNDQLKSSTKTLSELEARLQETQSEDVSSQLKEERLEQEKSLLESENKWLSRELSKV  204 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            34667788888899999999999887777766654444333333322222222              2222222333333


Q ss_pred             hhhhhhhhhc----chhhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h----------------
Q 026318          103 GLKLEVELRA----SEPVR-------AEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEA-E----------------  154 (240)
Q Consensus       103 ~~KmEAelRa----~e~lk-------~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~-d----------------  154 (240)
                      ..|+..-=|-    +.-|+       .++.-+..-++.|.....+|+..|+.+..++..++- .                
T Consensus       205 ~ekll~~~re~s~~~~~L~~~L~~~~~~~~~~q~~~~~l~q~~~eLs~~ie~~~~~ls~~k~t~~s~~~kf~~El~~q~k  284 (1822)
T KOG4674|consen  205 NEKLLSLRREHSIEVEQLEEKLSDLKESLAELQEKNKSLKQQNEELSKKIESLNLELSKLKDTAESSEEKFEKELSTQKK  284 (1822)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            3333322222    22222       233333333344444555566666555555544331 1                


Q ss_pred             -----hhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHhHHHHHH----HHHHHHHHHhhhcccccccc
Q 026318          155 -----NKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAR----EIEKLRAELLNTERRACGLG  225 (240)
Q Consensus       155 -----~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEknlisMar----EvEKLRaElanaekRa~~~~  225 (240)
                           ..+...+..+...+...|-..-.-++-=...+.++.+|+..|+..+-.+..    +|.+|-++|.++.+.-.+++
T Consensus       285 L~eL~ks~~ee~~~~~~el~~~i~~~~klled~~~~~~e~~d~l~e~~~sl~~~~~~~~k~~~~le~~l~~an~~~~~~~  364 (1822)
T KOG4674|consen  285 LNELWKSKLEELSHEVAELQRAIEELEKLLEDASERNKENTDQLKELEQSLSKLNEKLEKKVSRLEGELEDANDSLSATG  364 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhc
Confidence                 122333344444455555555555566677899999999999998877764    55678889999888877766


Q ss_pred             ccchhh--hhhh
Q 026318          226 KISFFL--GALT  235 (240)
Q Consensus       226 ~~g~~~--~~~~  235 (240)
                      ..+|.-  ||+.
T Consensus       365 ~~~~~s~~~a~~  376 (1822)
T KOG4674|consen  365 ESSMVSEKAALA  376 (1822)
T ss_pred             ccchhhhHHHHH
Confidence            666554  4444

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=91.01  E-value=15  Score=42.23  Aligned_cols=164  Identities=20%  Similarity=0.255  Sum_probs=111.8

Q ss_pred             HHHHHHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHH
Q 026318           45 IQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLR  124 (240)
Q Consensus        45 ~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r  124 (240)
                      +-..++.-+-.||-||-..|.-+-+++..++..|-....- ...-+..+.+.-+++.++.-|=       .|+.-=..+|
T Consensus      1164 i~~tk~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~-~q~~a~s~~e~~~i~~~v~~vN-------ll~EsN~~LR 1235 (1822)
T KOG4674|consen 1164 IAETKLDTLKRENARLKQQVASLNRTIDDLQRSLTAERAS-SQKSAVSDDEHKEILEKVEEVN-------LLRESNKVLR 1235 (1822)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccchhhhhhhhHHHHHHHHHH-------HHHHhHHHHH
Confidence            3344556677788888888888888877777666544321 1123444555555666555554       3344445556


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHhH-HHH
Q 026318          125 AEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNL-ISM  203 (240)
Q Consensus       125 ~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEknl-isM  203 (240)
                      .+-..+..-.|||..+|..+..++..++.++.+   ++++++....|+-.++.-.+-=|+-|-+.+++-+.-.+|- =..
T Consensus      1236 ee~~~~~~k~qEl~~~i~kl~~el~plq~~l~e---l~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL 1312 (1822)
T KOG4674|consen 1236 EENEANLEKIQELRDKIEKLNFELAPLQNELKE---LKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKL 1312 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHH
Confidence            666666666799999999999999999988654   5667777777777777766767777788888855555543 456


Q ss_pred             HHHHHHHHHHHhhhcc
Q 026318          204 AREIEKLRAELLNTER  219 (240)
Q Consensus       204 arEvEKLRaElanaek  219 (240)
                      ..||.+|-.|+.+.++
T Consensus      1313 ~~ei~~Lk~el~~ke~ 1328 (1822)
T KOG4674|consen 1313 KSEISRLKEELEEKEN 1328 (1822)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            7799999999987664

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=90.88  E-value=2.2  Score=32.00  Aligned_cols=59  Identities=15%  Similarity=0.205  Sum_probs=31.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 026318          116 VRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARR  177 (240)
Q Consensus       116 lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Ra  177 (240)
                      ++..+.++...+......-..|+..=-+...-|..+..+   +-.|++|++.|++|+.+.|.
T Consensus        10 Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e---~~~Lk~E~e~L~~el~~~r~   68 (69)
T PF14197_consen   10 LRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEE---NNKLKEENEALRKELEELRA   68 (69)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhc
Confidence            444454444444443333333333333333333333333   45688999999999888774

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=90.75  E-value=27  Score=37.64  Aligned_cols=100  Identities=12%  Similarity=0.161  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----h---hhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHH
Q 026318          117 RAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEA----E---NKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQ  189 (240)
Q Consensus       117 k~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~----d---~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~  189 (240)
                      ..++..++..++.+...++.+.+.+..+.+.+.....    +   ...+..+.+.+..+.+++..++..+.    .-...
T Consensus       776 ~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~  851 (1047)
T PRK10246        776 EETLTQLEQLKQNLENQRQQAQTLVTQTAQALAQHQQHRPDGLDLTVTVEQIQQELAQLAQQLRENTTRQG----EIRQQ  851 (1047)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHHHHHHHHHH----HHHHH
Confidence            4566777788888888888888877777666654211    1   23456667777777777766665552    11222


Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHhhhccc
Q 026318          190 IEQKQAMENNLISMAREIEKLRAELLNTERR  220 (240)
Q Consensus       190 ~Eq~qaMEknlisMarEvEKLRaElanaekR  220 (240)
                      +++.+...+.+-.+..+++.++.+......-
T Consensus       852 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  882 (1047)
T PRK10246        852 LKQDADNRQQQQALMQQIAQATQQVEDWGYL  882 (1047)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444455556666777777665554433

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=90.70  E-value=1.7  Score=37.46  Aligned_cols=98  Identities=16%  Similarity=0.230  Sum_probs=22.6

Q ss_pred             ccchHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchh
Q 026318           36 PMTLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEP  115 (240)
Q Consensus        36 p~~LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~  115 (240)
                      ...+++++.....|+..+.-.|-.++..-+.+-.++...+.++......|..++++...--..+-+.-..++.-=++++.
T Consensus        69 ~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~  148 (194)
T PF08614_consen   69 ISSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEI  148 (194)
T ss_dssp             ---------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35689999999999999998888888887777777777777777766666666555443222222222222222233345


Q ss_pred             hHHHHHHHHHHHHHHHHH
Q 026318          116 VRAEVVQLRAEVQKLNSS  133 (240)
Q Consensus       116 lk~El~Q~r~e~q~L~a~  133 (240)
                      +++|+.-+..+.-.+..-
T Consensus       149 l~DE~~~L~l~~~~~e~k  166 (194)
T PF08614_consen  149 LQDELQALQLQLNMLEEK  166 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            555555544444333333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=90.52  E-value=28  Score=38.92  Aligned_cols=110  Identities=16%  Similarity=0.202  Sum_probs=62.7

Q ss_pred             ccchHHHHHHHHHHHHHHHHhhhhhh---HhhHHHHHHHHhh---HHHHHH-HhhhhhhhhhhhhHhHHHHHhhhhhhhh
Q 026318           36 PMTLEEEIEIQRREMHRIISENRHAI---DDNTHLQRELTAS---KDEIHR-LGQIIPKLRADKEAHTRELFDRGLKLEV  108 (240)
Q Consensus        36 p~~LEe~La~Q~~EiqrLl~dNqRLA---athvaLrqeL~aa---q~El~~-l~~~i~~i~ae~e~q~Rel~ek~~KmEA  108 (240)
                      -.+||+-+.--..++..|...++.++   ..+--|.+.+.--   ..||++ -.+..-.=..+.+.++.+.-++..++++
T Consensus       436 ~~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~  515 (1317)
T KOG0612|consen  436 LQILEQSLVNEMQEKEKLDEKCQAVAELEEMDKELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEA  515 (1317)
T ss_pred             hhhcccchhhHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            35677777777788888888888888   5555666444433   333443 1111222234445555666666666666


Q ss_pred             hhhcc----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318          109 ELRAS----EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLT  145 (240)
Q Consensus       109 elRa~----e~lk~El~Q~r~e~q~L~a~RQELt~qvq~lt  145 (240)
                      ++|..    +.+++...+++-..+++.+.|++|-.....+.
T Consensus       516 ~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~~  556 (1317)
T KOG0612|consen  516 LVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELDMR  556 (1317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhh
Confidence            66654    33445555555555666666666654444333

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=90.51  E-value=9  Score=34.15  Aligned_cols=51  Identities=24%  Similarity=0.332  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 026318          117 RAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDG  167 (240)
Q Consensus       117 k~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~  167 (240)
                      ..|+.++..++..|....+.|...|.+..+++..++.+..++-..+.+|..
T Consensus        55 ~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p  105 (251)
T PF11932_consen   55 LAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVP  105 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345556666677777777777777777777777777777776666666665

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=90.48  E-value=0.079  Score=53.89  Aligned_cols=157  Identities=21%  Similarity=0.322  Sum_probs=0.0

Q ss_pred             hhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhh---hhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHH--
Q 026318           60 AIDDNTHLQRELTASKDEIHRLGQIIPKLRAD---KEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSR--  134 (240)
Q Consensus        60 LAathvaLrqeL~aaq~El~~l~~~i~~i~ae---~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~R--  134 (240)
                      ++..+..||..+...++|+.++.....+.+.+   .+.++.+|-.++.-+-++.+....+|+|+.-+|..+.++...-  
T Consensus       237 ~~~~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~  316 (713)
T PF05622_consen  237 LSVELADLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEAREARALRDELDELREKADRADKLENE  316 (713)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            33445667777777788887777666666543   3456777777777788888888899999888877665543321  


Q ss_pred             -----------HHHHHHHHHHHH-------HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHH
Q 026318          135 -----------QELTTQIKGLTK-------DVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAM  196 (240)
Q Consensus       135 -----------QELt~qvq~ltq-------eL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaM  196 (240)
                                 .+|..+|..|..       -...+-.+.+..++++..++.+++++..+-....-+++-.-........+
T Consensus       317 ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L  396 (713)
T PF05622_consen  317 VEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQL  396 (713)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                       122333333333       33345566777888888889888888888777777766655555566666


Q ss_pred             HHhHHHHHHHHHHHHHHHhh
Q 026318          197 ENNLISMAREIEKLRAELLN  216 (240)
Q Consensus       197 EknlisMarEvEKLRaElan  216 (240)
                      +..+-++.+|-+.|..|..+
T Consensus       397 ~ek~~~l~~eke~l~~e~~~  416 (713)
T PF05622_consen  397 EEKLEALEEEKERLQEERDS  416 (713)
T ss_dssp             --------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            66666777777777665543

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=90.43  E-value=32  Score=37.91  Aligned_cols=56  Identities=20%  Similarity=0.468  Sum_probs=32.6

Q ss_pred             hhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 026318          114 EPVRAEVVQLRAEV-QKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSEL  172 (240)
Q Consensus       114 e~lk~El~Q~r~e~-q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqEl  172 (240)
                      +.++..+..++.+. +.+.+.+-+...++..|.+++.++..   ++..|+.|++.++.++
T Consensus       375 d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~---~~~~L~~e~~~~~~~~  431 (1074)
T KOG0250|consen  375 DRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEE---QINSLREELNEVKEKA  431 (1074)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence            34444455555555 56666666666666666666666655   5555555555555444

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=90.40  E-value=12  Score=40.39  Aligned_cols=96  Identities=16%  Similarity=0.222  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHhhHHH--------------HHHHhhhhhhhhhhhhHhHHHHHhhhhhhh
Q 026318           42 EIEIQRREMHRIISENRHAIDDNTHLQRELTASKDE--------------IHRLGQIIPKLRADKEAHTRELFDRGLKLE  107 (240)
Q Consensus        42 ~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~E--------------l~~l~~~i~~i~ae~e~q~Rel~ek~~KmE  107 (240)
                      ++..|..+||-=|-+-+|=|..---+++||.--.++              +..+.+-+-.+++|.+.||-++--++..+|
T Consensus       327 kltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e  406 (1265)
T KOG0976|consen  327 KLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRLE  406 (1265)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            567788888887877777776666666665432221              122233346788999999999999999999


Q ss_pred             hhhhcchhhHHHHHHHHHHHHHHHHHHHHH
Q 026318          108 VELRASEPVRAEVVQLRAEVQKLNSSRQEL  137 (240)
Q Consensus       108 AelRa~e~lk~El~Q~r~e~q~L~a~RQEL  137 (240)
                      .=-+.-|++|.||+.+---+..+.+.+-++
T Consensus       407 ~~~~dhe~~kneL~~a~ekld~mgthl~ma  436 (1265)
T KOG0976|consen  407 QGKKDHEAAKNELQEALEKLDLMGTHLSMA  436 (1265)
T ss_pred             hccchhHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            888888999999998877666666555443

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=90.29  E-value=27  Score=38.52  Aligned_cols=78  Identities=17%  Similarity=0.240  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhc
Q 026318          139 TQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTE  218 (240)
Q Consensus       139 ~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEknlisMarEvEKLRaElanae  218 (240)
                      .++..++++|..+.   +.+.+-..+.+.-.+|++++-..+|-.++..-.+--|+..+++++-+...|+..|++.+.+++
T Consensus       787 ~rlkdl~keik~~k---~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~  863 (1174)
T KOG0933|consen  787 RRLKDLEKEIKTAK---QRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVE  863 (1174)
T ss_pred             hHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            34555555555443   234445566677777777777777777777777777888999999999999999999988765


Q ss_pred             c
Q 026318          219 R  219 (240)
Q Consensus       219 k  219 (240)
                      .
T Consensus       864 ~  864 (1174)
T KOG0933|consen  864 K  864 (1174)
T ss_pred             h
Confidence            3

>PHA02562 46 endonuclease subunit; Provisional

Probab=90.24  E-value=18  Score=34.92  Aligned_cols=54  Identities=11%  Similarity=0.294  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 026318          126 EVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAF  179 (240)
Q Consensus       126 e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~  179 (240)
                      .+..|...+.+|..++..+...+........+.-.+...+..++.++...|..+
T Consensus       300 ~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i  353 (562)
T PHA02562        300 RITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSL  353 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444455555555555554444444444444444444444444444444443

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=90.07  E-value=12  Score=32.71  Aligned_cols=23  Identities=17%  Similarity=0.361  Sum_probs=13.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhh
Q 026318          158 LIAMRADIDGIRSELVEARRAFE  180 (240)
Q Consensus       158 ip~l~aEid~lrqElqr~Raa~E  180 (240)
                      +-..+..++.+++.+...|..+.
T Consensus        86 i~~~r~~l~~~~~~l~~~~~~l~  108 (302)
T PF10186_consen   86 IEQKRERLEELRESLEQRRSRLS  108 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456666666666666666555

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=89.99  E-value=3.8  Score=34.39  Aligned_cols=62  Identities=19%  Similarity=0.381  Sum_probs=29.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 026318          115 PVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARR  177 (240)
Q Consensus       115 ~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Ra  177 (240)
                      .|..|+.+++.++..|......|.+++..|++.+.-.. =..+|-.|..|+..|..-+..+|+
T Consensus        76 ~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~e-l~~~i~~l~~e~~~l~~kL~~l~~  137 (169)
T PF07106_consen   76 ELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEE-LREEIEELEEEIEELEEKLEKLRS  137 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34445555555555555555555555555554443111 012344444455555555554444

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PRK11546 zraP zinc resistance protein; Provisional

Probab=89.89  E-value=1  Score=38.46  Aligned_cols=52  Identities=15%  Similarity=0.227  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 026318          129 KLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFE  180 (240)
Q Consensus       129 ~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~E  180 (240)
                      +-...||+|.++=..|...++....|-+.|-+|..||..||+.|.-.|..|+
T Consensus        62 ~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~~  113 (143)
T PRK11546         62 QTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVKRD  113 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455677777777777788888899999999999999999999887776443

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=89.82  E-value=1.3  Score=46.59  Aligned_cols=60  Identities=22%  Similarity=0.447  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 026318          118 AEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARR  177 (240)
Q Consensus       118 ~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Ra  177 (240)
                      -||-++..++-+|.+.|--|...+-.||-++.++....+-+|.|+++++.|+|=|--+=-
T Consensus       866 GElthlq~e~~~le~~Rs~laeElvklT~e~e~l~ek~~~~p~~~~~ledL~qRy~a~Lq  925 (961)
T KOG4673|consen  866 GELTHLQTELASLESIRSSLAEELVKLTAECEKLREKADRVPGIKAELEDLRQRYAAALQ  925 (961)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            489999999999999999999999999999999999999999999999999987754433

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=89.56  E-value=14  Score=32.60  Aligned_cols=138  Identities=20%  Similarity=0.309  Sum_probs=82.8

Q ss_pred             hhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318           63 DNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIK  142 (240)
Q Consensus        63 thvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq  142 (240)
                      .+-.|+.+++..+.-..+....+.++..|    .+.|.+-..+.+.++   +.++.++.+-..|...|...+.-+    .
T Consensus        28 lIksLKeei~emkk~e~~~~k~m~ei~~e----N~~L~epL~~a~~e~---~eL~k~L~~y~kdK~~L~~~k~rl----~   96 (201)
T PF13851_consen   28 LIKSLKEEIAEMKKKEERNEKLMAEISQE----NKRLSEPLKKAEEEV---EELRKQLKNYEKDKQSLQNLKARL----K   96 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH----H
Confidence            34557777776665555554444444433    445555555555443   456666666666666666555444    3


Q ss_pred             HHHHHHHHHHHhh----hhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 026318          143 GLTKDVNRLEAEN----KQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNT  217 (240)
Q Consensus       143 ~ltqeL~r~~~d~----qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEknlisMarEvEKLRaElana  217 (240)
                      .+.++|..+.-+.    |++-.+..|.|.|..=..  .+-+|+-.|+...++    .+|+.|.+|...+|+--++|...
T Consensus        97 ~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~--~~i~evqQk~~~kn~----lLEkKl~~l~~~lE~keaqL~ev  169 (201)
T PF13851_consen   97 ELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFE--SAIQEVQQKTGLKNL----LLEKKLQALSEQLEKKEAQLNEV  169 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555444433    344455555555554433  345667777776665    68999999999999999998654

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=89.52  E-value=9.2  Score=39.15  Aligned_cols=93  Identities=27%  Similarity=0.397  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH----HHHHHHHHHHHHHHHHHHhhhhhh--hcchHHHH-HHHHH
Q 026318          124 RAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLI----AMRADIDGIRSELVEARRAFEFEK--KANEEQIE-QKQAM  196 (240)
Q Consensus       124 r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip----~l~aEid~lrqElqr~Raa~EyEK--K~~~e~~E-q~qaM  196 (240)
                      ..|++.|...-++|..++..+..++....+..+++-    ...++...+.+++.--..+++.--  ..|++.++ ..++=
T Consensus       327 ~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s  406 (594)
T PF05667_consen  327 EQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEAS  406 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence            344445555555555555555555555555444422    334444455555555555554422  23333332 23455


Q ss_pred             HHhHHHHHHHHHHHHHHHhh
Q 026318          197 ENNLISMAREIEKLRAELLN  216 (240)
Q Consensus       197 EknlisMarEvEKLRaElan  216 (240)
                      +.||+.++.+-|+-|+.|-.
T Consensus       407 ~~rl~~L~~qWe~~R~pL~~  426 (594)
T PF05667_consen  407 EQRLVELAQQWEKHRAPLIE  426 (594)
T ss_pred             HHHHHHHHHHHHHHHhHHHH
Confidence            88999999999999998754

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=89.16  E-value=11  Score=30.76  Aligned_cols=43  Identities=16%  Similarity=0.288  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 026318          144 LTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKAN  186 (240)
Q Consensus       144 ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~  186 (240)
                      ...||.+-..+++.|..+++++..++.++..+++..+-=+...
T Consensus        47 YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l   89 (132)
T PF07926_consen   47 YERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAEL   89 (132)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4557777778889999999999999999988888877655544

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=88.94  E-value=32  Score=35.93  Aligned_cols=180  Identities=21%  Similarity=0.310  Sum_probs=101.3

Q ss_pred             chHHHHHHHHHHHHHHHHhhhh-------hhHhhHHHHHHHHhhHHHHHHHhhhhhhhhh----hh------hHhHHHHH
Q 026318           38 TLEEEIEIQRREMHRIISENRH-------AIDDNTHLQRELTASKDEIHRLGQIIPKLRA----DK------EAHTRELF  100 (240)
Q Consensus        38 ~LEe~La~Q~~EiqrLl~dNqR-------LAathvaLrqeL~aaq~El~~l~~~i~~i~a----e~------e~q~Rel~  100 (240)
                      .||..|..-..||+..-.-=+-       |-.+.-.||.||...++|-..|..-+..+..    |+      |-++++.-
T Consensus       422 rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~  501 (697)
T PF09726_consen  422 RLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEER  501 (697)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4565555555555432211111       2333456777777777776666554444332    22      23333333


Q ss_pred             hhhhhhhhhhhcc--------------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 026318          101 DRGLKLEVELRAS--------------------------EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLE--  152 (240)
Q Consensus       101 ek~~KmEAelRa~--------------------------e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~--  152 (240)
                      +....+|+.|.+-                          |..|.-..++-.|+++|...-+..-.+++.+.+|++-++  
T Consensus       502 ~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~  581 (697)
T PF09726_consen  502 RQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKY  581 (697)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444443322                          234444455555555555554444455555555443222  


Q ss_pred             -Hh-hhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHH-------HHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 026318          153 -AE-NKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQI-------EQKQAMENNLISMAREIEKLRAELLNT  217 (240)
Q Consensus       153 -~d-~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~-------Eq~qaMEknlisMarEvEKLRaElana  217 (240)
                       .| .+-+-.|...|-.|+..-+|+=..+-.|-+-+.|+.       -|+..-+..+.+==+||+-|.+.|+..
T Consensus       582 ~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~  655 (697)
T PF09726_consen  582 EKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQL  655 (697)
T ss_pred             HhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             22 344677777777888888888777777877666654       356666677777788999999988764

; GO: 0016021 integral to membrane

>PRK11519 tyrosine kinase; Provisional

Probab=88.89  E-value=13  Score=38.11  Aligned_cols=111  Identities=14%  Similarity=0.267  Sum_probs=60.1

Q ss_pred             HhhHHHHHHHHhhHHHHHHHhhhhhhhhhhh-----hHhHHHHHhhhhhhhhhhhcchhhHHHHHHH----HHHHHHHHH
Q 026318           62 DDNTHLQRELTASKDEIHRLGQIIPKLRADK-----EAHTRELFDRGLKLEVELRASEPVRAEVVQL----RAEVQKLNS  132 (240)
Q Consensus        62 athvaLrqeL~aaq~El~~l~~~i~~i~ae~-----e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~----r~e~q~L~a  132 (240)
                      .+-.=|.++|...+++|...-..+.+.+.++     +.+.+.+++....+++++...+...+++.+.    |-.+     
T Consensus       267 ~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~vd~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~y~~~hP~v-----  341 (719)
T PRK11519        267 KSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLNELTFKEAEISKLYTKEHPAY-----  341 (719)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHH-----
Confidence            4444566666666666666555555555543     2344556666655554444332222222211    1112     


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 026318          133 SRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAF  179 (240)
Q Consensus       133 ~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~  179 (240)
                        +.|..+.+.+.++++.+++....+|....++..|..+..-.+..|
T Consensus       342 --~~l~~~~~~L~~~~~~l~~~~~~lp~~e~~~~~L~Re~~~~~~lY  386 (719)
T PRK11519        342 --RTLLEKRKALEDEKAKLNGRVTAMPKTQQEIVRLTRDVESGQQVY  386 (719)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence              234455566677777777777778877776666666655555543

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=88.80  E-value=41  Score=36.86  Aligned_cols=67  Identities=15%  Similarity=0.328  Sum_probs=30.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 026318          114 EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFE  180 (240)
Q Consensus       114 e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~E  180 (240)
                      ..++.++.++..+++.....|.++..==.-+.....+..+-....|.+.+++.++.+++...+..+.
T Consensus       774 ~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~  840 (1201)
T PF12128_consen  774 QQLKQEIEQLEKELKRIEERRAEVIEYEDWLQEEWDKVDELREEKPELEEQLRDLEQELQELEQELN  840 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            3345555555555555444444333222222222222222223456666666666665555554443

>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family

Probab=88.74  E-value=6.7  Score=36.37  Aligned_cols=30  Identities=7%  Similarity=0.129  Sum_probs=18.3

Q ss_pred             hhHHHHHHHHhhHHHHHHHhhhhhhhhhhh
Q 026318           63 DNTHLQRELTASKDEIHRLGQIIPKLRADK   92 (240)
Q Consensus        63 thvaLrqeL~aaq~El~~l~~~i~~i~ae~   92 (240)
                      +-.-|.+++..++++|......+.+.+.++
T Consensus       171 a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~  200 (362)
T TIGR01010       171 TIAFAENEVKEAEQRLNATKAELLKYQIKN  200 (362)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            344566666666666666666666665544

This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.

>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.59  E-value=8.6  Score=39.63  Aligned_cols=120  Identities=17%  Similarity=0.302  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhh-----hhhhhHhHHHHH-----hhhhhhhhhhhcchh
Q 026318           46 QRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKL-----RADKEAHTRELF-----DRGLKLEVELRASEP  115 (240)
Q Consensus        46 Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i-----~ae~e~q~Rel~-----ek~~KmEAelRa~e~  115 (240)
                      ...||...-.||++|+.-.-+|+.++..+..-+--+..+..++     +-+++.-.+++.     +++.|||++|.-...
T Consensus       329 ~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~  408 (654)
T KOG4809|consen  329 RLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHN  408 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3468999999999999999999999887766555555544444     445666666654     789999998865433


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 026318          116 VRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIR  169 (240)
Q Consensus       116 lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lr  169 (240)
                      .-.|   ++++ ......++.|-...--..+++.++++++..+=.+-+|.++++
T Consensus       409 ~~dd---ar~~-pe~~d~i~~le~e~~~y~de~~kaqaevdrlLeilkeveneK  458 (654)
T KOG4809|consen  409 IEDD---ARMN-PEFADQIKQLEKEASYYRDECGKAQAEVDRLLEILKEVENEK  458 (654)
T ss_pred             hhHh---hhcC-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            2222   2221 133445555666666666666666666666666666666554

>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional

Probab=88.42  E-value=32  Score=36.58  Aligned_cols=81  Identities=20%  Similarity=0.368  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHhH------HHHHHHHHH
Q 026318          136 ELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNL------ISMAREIEK  209 (240)
Q Consensus       136 ELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEknl------isMarEvEK  209 (240)
                      ++..+|..|++++.+--.++=..|.|+.=++.|+-|+-.+=.+=+-|-|..++-+||-  +.+.+      -.+--=-|.
T Consensus       646 ~~k~KIe~L~~eIkkkIe~av~ss~LK~k~E~Lk~Evaka~~~pd~~~k~kieal~~q--ik~~~~~a~~~~~lkek~e~  723 (762)
T PLN03229        646 NLQEKIESLNEEINKKIERVIRSSDLKSKIELLKLEVAKASKTPDVTEKEKIEALEQQ--IKQKIAEALNSSELKEKFEE  723 (762)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHH--HHHHHHHHhccHhHHHHHHH
Confidence            4467889999999998889989999999999999999888878888888888888873  22222      223334688


Q ss_pred             HHHHHhhhc
Q 026318          210 LRAELLNTE  218 (240)
Q Consensus       210 LRaElanae  218 (240)
                      |++||+.+.
T Consensus       724 l~~e~~~~~  732 (762)
T PLN03229        724 LEAELAAAR  732 (762)
T ss_pred             HHHHHHHhh
Confidence            999997643

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=88.19  E-value=26  Score=36.20  Aligned_cols=124  Identities=18%  Similarity=0.345  Sum_probs=70.3

Q ss_pred             hhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---
Q 026318           82 GQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQL---  158 (240)
Q Consensus        82 ~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqi---  158 (240)
                      ...+..+++|+|.+.--|-.-++.          ++....++..++..|...+...+.+|+.|-..|++++......   
T Consensus         3 ~e~l~qlq~Erd~ya~~lk~e~a~----------~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~   72 (617)
T PF15070_consen    3 MESLKQLQAERDQYAQQLKEESAQ----------WQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPP   72 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCc
Confidence            456778889999877666555544          3455556666666777777777777777777776666543321   


Q ss_pred             --H--------HHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHH-HHHHHhHHHHHHHHHHHHHHHhh
Q 026318          159 --I--------AMRADIDGIRSELVEARRAFEFEKKANEEQIEQK-QAMENNLISMAREIEKLRAELLN  216 (240)
Q Consensus       159 --p--------~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~-qaMEknlisMarEvEKLRaElan  216 (240)
                        |        .|.+|++.|++|+..+-.-+..--+ +.+.+... +..|.-|...=+.++.+..+...
T Consensus        73 ~~pa~pse~E~~Lq~E~~~L~kElE~L~~qlqaqv~-~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D  140 (617)
T PF15070_consen   73 EPPAGPSEVEQQLQAEAEHLRKELESLEEQLQAQVE-NNEQLSRLNQEQEERLAELEEELERLQEQQED  140 (617)
T ss_pred             cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              1        4566666777776665554443222 22222222 33344455555555555555433

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=88.04  E-value=24  Score=33.30  Aligned_cols=45  Identities=18%  Similarity=0.299  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 026318          136 ELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFE  180 (240)
Q Consensus       136 ELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~E  180 (240)
                      .+..++..+...++..+.+...+|....+...|+.|+.-+|..|+
T Consensus       315 ~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~L~r~~~~~~~~y~  359 (444)
T TIGR03017       315 ILKQREAELREALENQKAKVLELNRQRDEMSVLQRDVENAQRAYD  359 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666677777777777778888888888888777777666543

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>PF15294 Leu_zip: Leucine zipper

Probab=88.02  E-value=15  Score=34.62  Aligned_cols=118  Identities=23%  Similarity=0.351  Sum_probs=70.4

Q ss_pred             hhHhHHHHHhhhhhhhhhhhcch----------------------hhHHHHHHHHHHHHHHHHH--------------HH
Q 026318           92 KEAHTRELFDRGLKLEVELRASE----------------------PVRAEVVQLRAEVQKLNSS--------------RQ  135 (240)
Q Consensus        92 ~e~q~Rel~ek~~KmEAelRa~e----------------------~lk~El~Q~r~e~q~L~a~--------------RQ  135 (240)
                      .+.+=|+|++.+.++|..-=+..                      -+..|+.-++.|.++|..-              +.
T Consensus        84 selEn~eLLe~i~~~E~~~~~~~~~~~~~~~~~KL~pl~e~g~~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~  163 (278)
T PF15294_consen   84 SELENRELLEQIAEFEKQEFTSSFKPNQETSKPKLEPLNESGGSELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKS  163 (278)
T ss_pred             HHHHHHHHHHHHHHHHHhhhcccCCccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35667888888888875432222                      2566666666666666553              33


Q ss_pred             HHHHHHHHHHHHHHHHH------HhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHhHHHHHHHHHH
Q 026318          136 ELTTQIKGLTKDVNRLE------AENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEK  209 (240)
Q Consensus       136 ELt~qvq~ltqeL~r~~------~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEknlisMarEvEK  209 (240)
                      .|..+++.+..+.....      ...|+++.|..-+-.++         .+|||. --+.-++.++++-|+.+--.+|=+
T Consensus       164 kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK---------~e~ek~-~~d~~~~~k~L~e~L~~~KhelL~  233 (278)
T PF15294_consen  164 KLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALK---------SELEKA-LQDKESQQKALEETLQSCKHELLR  233 (278)
T ss_pred             HHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHH---------HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33333333333221111      23344444444444443         455655 334455999999999999999999


Q ss_pred             HHHHHhhhcc
Q 026318          210 LRAELLNTER  219 (240)
Q Consensus       210 LRaElanaek  219 (240)
                      ....|..+++
T Consensus       234 ~QeqL~~aek  243 (278)
T PF15294_consen  234 VQEQLSLAEK  243 (278)
T ss_pred             cchhhhcchh
Confidence            9998887765

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=87.99  E-value=30  Score=34.39  Aligned_cols=48  Identities=19%  Similarity=0.232  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 026318          165 IDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELL  215 (240)
Q Consensus       165 id~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEknlisMarEvEKLRaEla  215 (240)
                      ++-+++|-+...+.++-+..+.-..++.++.=+.   ++..+|.+++++.+
T Consensus       201 l~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~---~L~~~Ias~e~~aA  248 (420)
T COG4942         201 LAQLLEERKKTLAQLNSELSADQKKLEELRANES---RLKNEIASAEAAAA  248 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHH
Confidence            3344455555555555555555555555555554   55566666664443

>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin

Probab=87.97  E-value=22  Score=33.23  Aligned_cols=78  Identities=19%  Similarity=0.299  Sum_probs=64.7

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----HHHHHHHHHHHHHHHHHHHhhhhhhhcchH
Q 026318          113 SEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQL----IAMRADIDGIRSELVEARRAFEFEKKANEE  188 (240)
Q Consensus       113 ~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqi----p~l~aEid~lrqElqr~Raa~EyEKK~~~e  188 (240)
                      +..+..++.+.+..+.+|.+.-..|.+++..-++||.|.+.-++.+    |+-.+|-|.+..||+..=..| .+|=-|.+
T Consensus       171 i~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y-~~kfRNl~  249 (267)
T PF10234_consen  171 IKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIY-VEKFRNLD  249 (267)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHH-HHHHHhHH
Confidence            4678899999999999999999999999999999999999877766    888999999999999876544 34444444


Q ss_pred             HHH
Q 026318          189 QIE  191 (240)
Q Consensus       189 ~~E  191 (240)
                      -+|
T Consensus       250 yLe  252 (267)
T PF10234_consen  250 YLE  252 (267)
T ss_pred             HHH
Confidence            444

Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=87.92  E-value=0.16  Score=51.78  Aligned_cols=20  Identities=20%  Similarity=0.348  Sum_probs=0.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHH
Q 026318          158 LIAMRADIDGIRSELVEARR  177 (240)
Q Consensus       158 ip~l~aEid~lrqElqr~Ra  177 (240)
                      +|.|.++...++.|+.++|.
T Consensus       259 i~~LE~en~~l~~Elk~Lr~  278 (722)
T PF05557_consen  259 IRELEKENRRLREELKHLRQ  278 (722)
T ss_dssp             --------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444443

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=87.69  E-value=16  Score=31.00  Aligned_cols=68  Identities=21%  Similarity=0.298  Sum_probs=27.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhh
Q 026318          115 PVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFE  182 (240)
Q Consensus       115 ~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyE  182 (240)
                      .-|+|+.-+..++..+++.++.|...+..++.|-.-+....|+.-.=..|++...-.+.+.=...|-|
T Consensus        49 n~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~e  116 (140)
T PF10473_consen   49 NSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQE  116 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            33444444444444444444444444444443333333333333333334444443333333333333

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=87.66  E-value=40  Score=35.51  Aligned_cols=59  Identities=17%  Similarity=0.228  Sum_probs=26.3

Q ss_pred             CCCCCCCCCCCCCCCCCCccchHHHHHHHHH-HHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhh
Q 026318           18 RDGPRPVLTRGLAPMHFHPMTLEEEIEIQRR-EMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQ   83 (240)
Q Consensus        18 ~~~p~p~~~r~~~~~~p~p~~LEe~La~Q~~-EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~   83 (240)
                      ++++-|.-+.   |+|+..   +.++..... ++.+|-.+-.+ ...--.|++++.....+++.+..
T Consensus       456 ~~~~CPvCg~---~l~~~~---~~~~~~~~~~el~~l~~~i~~-~~~~~~l~~e~~~l~~~l~~~~~  515 (908)
T COG0419         456 AGEKCPVCGQ---ELPEEH---EKELLELYELELEELEEELSR-EKEEAELREEIEELEKELRELEE  515 (908)
T ss_pred             CCCCCCCCCC---CCCcHH---HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            3556676554   233222   444444444 45544444442 22222335555555555544443

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=87.40  E-value=46  Score=35.91  Aligned_cols=50  Identities=16%  Similarity=0.203  Sum_probs=26.8

Q ss_pred             hHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhh
Q 026318           39 LEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKL   88 (240)
Q Consensus        39 LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i   88 (240)
                      .+..+..-..+++.+...-..+......+.+.+...+..+..+...+..+
T Consensus       528 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  577 (1047)
T PRK10246        528 NQSRLDALEKEVKKLGEEGAALRGQLDALTKQLQRDESEAQSLRQEEQAL  577 (1047)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35566666666666655444544444455555555555555444444433

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=87.11  E-value=22  Score=38.38  Aligned_cols=83  Identities=20%  Similarity=0.312  Sum_probs=41.3

Q ss_pred             hHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318           61 IDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQ  140 (240)
Q Consensus        61 AathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~q  140 (240)
                      -+-.-.|.+||.+...-+|.|+.-+-+++...--+--++-.-.-.       .|-+..|..|+.+.+|.+...-+-|+-+
T Consensus       436 nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q-------~e~~isei~qlqarikE~q~kl~~l~~E  508 (1118)
T KOG1029|consen  436 NAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQ-------RELMISEIDQLQARIKELQEKLQKLAPE  508 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhH-------HHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence            344445666777777777777766666666554433332222222       2344445555555555444444444444


Q ss_pred             HHHHHHHHHH
Q 026318          141 IKGLTKDVNR  150 (240)
Q Consensus       141 vq~ltqeL~r  150 (240)
                      -|.+...|..
T Consensus       509 kq~l~~qlkq  518 (1118)
T KOG1029|consen  509 KQELNHQLKQ  518 (1118)
T ss_pred             HHHHHHHHHH
Confidence            4444443333

>PF13514 AAA_27: AAA domain

Probab=86.91  E-value=49  Score=35.72  Aligned_cols=87  Identities=14%  Similarity=0.221  Sum_probs=50.3

Q ss_pred             HHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHhhhhhHHHH
Q 026318           96 TRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELT-------------TQIKGLTKDVNRLEAENKQLIAMR  162 (240)
Q Consensus        96 ~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt-------------~qvq~ltqeL~r~~~d~qqip~l~  162 (240)
                      +.+.++....+-..++....++..+.+...++..+...-..|.             .-+..+...|..++...+++-.+.
T Consensus       728 ~~~~l~~l~~l~~~~~~~~~~~~ri~~~~~~~~~f~~~~~~L~~~l~~~~~~~~~~~~~~~L~~~l~~a~~~~~~~~~l~  807 (1111)
T PF13514_consen  728 ALEALELLEELREALAEIRELRRRIEQMEADLAAFEEQVAALAERLGPDLPEDPAEEALEALRARLEEAREAQEERERLQ  807 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444444444444444433333332             456777778888888778888888


Q ss_pred             HHHHHHHHHHHHHHHhhhhh
Q 026318          163 ADIDGIRSELVEARRAFEFE  182 (240)
Q Consensus       163 aEid~lrqElqr~Raa~EyE  182 (240)
                      .+++.+++++..+...++.-
T Consensus       808 ~~~~~~~~~~~~~~~~l~~~  827 (1111)
T PF13514_consen  808 EQLEELEEELEQAEEELEEL  827 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            88888888877776665433

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=86.75  E-value=42  Score=37.05  Aligned_cols=123  Identities=20%  Similarity=0.305  Sum_probs=64.2

Q ss_pred             hhhHhhHHHHHHHHhhHHHH--------------HHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhh----hcchhhHHHH
Q 026318           59 HAIDDNTHLQRELTASKDEI--------------HRLGQIIPKLRADKEAHTRELFDRGLKLEVEL----RASEPVRAEV  120 (240)
Q Consensus        59 RLAathvaLrqeL~aaq~El--------------~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAel----Ra~e~lk~El  120 (240)
                      ++.++.-.++.++.-.+++|              ..+-.-+.+..+++|-.+-++.-.+-.....+    +-.+.-..|.
T Consensus       738 ~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~  817 (1174)
T KOG0933|consen  738 KLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEY  817 (1174)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555544443              34444556667777777777665554333332    2233333444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 026318          121 VQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKK  184 (240)
Q Consensus       121 ~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK  184 (240)
                      .-+..|+..|....+-+-.+.+++...+..+.+   .++.+.+.+++...+...+-+.+..+|+
T Consensus       818 e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~---e~~~l~~kv~~~~~~~~~~~~el~~~k~  878 (1174)
T KOG0933|consen  818 ERLQLEHEELEKEISSLKQQLEQLEKQISSLKS---ELGNLEAKVDKVEKDVKKAQAELKDQKA  878 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhHHhHHHHHHHHHHHHHH
Confidence            444444444444444444444444444333333   3566666666666666666666666655

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=86.69  E-value=22  Score=31.41  Aligned_cols=112  Identities=21%  Similarity=0.291  Sum_probs=56.8

Q ss_pred             chHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchh--
Q 026318           38 TLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEP--  115 (240)
Q Consensus        38 ~LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~--  115 (240)
                      -|.+.|..-+.+++.|..||+-|=.-  -.||+-+-.+  ......-+|.+-.=..-++|.|=++..+.....++.+.  
T Consensus        16 ~L~n~l~elq~~l~~l~~ENk~Lk~l--q~Rq~kAL~k--~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~kl   91 (194)
T PF15619_consen   16 ELQNELAELQRKLQELRKENKTLKQL--QKRQEKALQK--YEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKL   91 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH--HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47788899999999999999877543  2333322211  11112223333333334444444444444444433321  


Q ss_pred             --hHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
Q 026318          116 --VRAEVVQLRAEVQKLNS--------SRQELTTQIKGLTKDVNRLEA  153 (240)
Q Consensus       116 --lk~El~Q~r~e~q~L~a--------~RQELt~qvq~ltqeL~r~~~  153 (240)
                        .-.|+.....+++.|..        .|.+|+.++..++..++....
T Consensus        92 k~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~  139 (194)
T PF15619_consen   92 KDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEK  139 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence              11244444444443322        366777666666666554433

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=85.94  E-value=43  Score=36.87  Aligned_cols=136  Identities=18%  Similarity=0.282  Sum_probs=0.0

Q ss_pred             HhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 026318           94 AHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELV  173 (240)
Q Consensus        94 ~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElq  173 (240)
                      .|+|+|.+|.--+-..=..-..==.||..++.+...|...|--++++...|.++|.+++-+.++.-+.+.+.-..--+++
T Consensus       231 ~QvrdLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~a  310 (1243)
T KOG0971|consen  231 AQVRDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTA  310 (1243)
T ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHhhhhhhhcchHHHHHHH----HHHHhHHHHHHHHHHHHHHHhhhccccccccccchhh
Q 026318          174 EARRAFEFEKKANEEQIEQKQ----AMENNLISMAREIEKLRAELLNTERRACGLGKISFFL  231 (240)
Q Consensus       174 r~Raa~EyEKK~~~e~~Eq~q----aMEknlisMarEvEKLRaElanaekRa~~~~~~g~~~  231 (240)
                      -.=-.+-.+|----|..|..|    +....+.+|.-++|=|++|.+|-  .+-+.+..+|.+
T Consensus       311 d~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeek--G~~~~~~ss~qf  370 (1243)
T KOG0971|consen  311 DAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEK--GSDGQAASSYQF  370 (1243)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCcccchHHH

>PF12592 DUF3763: Protein of unknown function (DUF3763); InterPro: IPR022547 This domain is found in bacterial regulartory ATPases 3

Probab=85.94  E-value=4.6  Score=29.49  Aligned_cols=55  Identities=24%  Similarity=0.234  Sum_probs=45.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHhHHHHHHHHHHHHH
Q 026318          158 LIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRA  212 (240)
Q Consensus       158 ip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEknlisMarEvEKLRa  212 (240)
                      -..+.++++.+.+++...|+-|.---.-++-.-+=.-.||-.|..++..++.++.
T Consensus         2 ~~e~~~qL~~~~~~l~~qR~~F~~~qPhlFI~~~wl~~IE~Sl~~l~eqL~q~~~   56 (57)
T PF12592_consen    2 PEEALAQLDEAEHELRQQRSLFHQHQPHLFIDSEWLAAIEASLQQLAEQLEQLKQ   56 (57)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHTT---TTS-HHHHHHHHHHHHHHHHHHHHH--
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcCCCcCcCHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4578899999999999999999999998888899999999999999999998874

6.3. from EC, and is approximately 60 amino acids in length. The domain is found C-terminal to PF07728 from PFAM. There is a single completely conserved residue F that may be functionally important. ; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances; PDB: 3NBX_X.

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]

Probab=85.94  E-value=33  Score=32.71  Aligned_cols=122  Identities=18%  Similarity=0.217  Sum_probs=69.4

Q ss_pred             hHHHHHHHHHHH----HHHHHhhhhhhHhhHHHHH-----------HHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhh
Q 026318           39 LEEEIEIQRREM----HRIISENRHAIDDNTHLQR-----------ELTASKDEIHRLGQIIPKLRADKEAHTRELFDRG  103 (240)
Q Consensus        39 LEe~La~Q~~Ei----qrLl~dNqRLAathvaLrq-----------eL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~  103 (240)
                      +|-.|..|-..|    +.|.++||||-..-.++|.           ...+..+|+-++.++-..    ---+||+|-+..
T Consensus        46 ~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeq----l~kyiReLEQaN  121 (333)
T KOG1853|consen   46 IEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQ----LRKYIRELEQAN  121 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhc
Confidence            566666655544    5688999998876655543           333444444444333222    234677777777


Q ss_pred             hhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 026318          104 LKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVE  174 (240)
Q Consensus       104 ~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr  174 (240)
                      --||--=|+..-.-.++.|      +|.-+    ..+..-|..||---..-+-.+--|+.|--.|||||+-
T Consensus       122 DdLErakRati~sleDfeq------rLnqA----IErnAfLESELdEke~llesvqRLkdEardlrqelav  182 (333)
T KOG1853|consen  122 DDLERAKRATIYSLEDFEQ------RLNQA----IERNAFLESELDEKEVLLESVQRLKDEARDLRQELAV  182 (333)
T ss_pred             cHHHHhhhhhhhhHHHHHH------HHHHH----HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777655555444334333      22211    1233445555555555555666778888888888864

>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]

Probab=85.91  E-value=12  Score=36.11  Aligned_cols=48  Identities=21%  Similarity=0.279  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhh
Q 026318          134 RQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEF  181 (240)
Q Consensus       134 RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~Ey  181 (240)
                      .+-+-.+.+.+.++++.+++.+..+|....++..|..|.+-.|+.||-
T Consensus       344 ~~~l~~~~~~L~~~~~~l~~~~~~~~~~~~~l~~L~Re~~~~r~~ye~  391 (458)
T COG3206         344 LALLEQQEAALEKELAQLKGRLSKLPKLQVQLRELEREAEAARSLYET  391 (458)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhchHhhhHHHHHHHHHHHHHHHHHH
Confidence            344778888899999999999999999999999999999999998874

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=85.51  E-value=18  Score=32.20  Aligned_cols=24  Identities=25%  Similarity=0.555  Sum_probs=9.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 026318          129 KLNSSRQELTTQIKGLTKDVNRLE  152 (240)
Q Consensus       129 ~L~a~RQELt~qvq~ltqeL~r~~  152 (240)
                      ++...+++|..++..+.+++..+.
T Consensus        46 ~~~~e~~~L~~e~~~l~~e~e~L~   69 (251)
T PF11932_consen   46 QWDDEKQELLAEYRQLEREIENLE   69 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=85.42  E-value=41  Score=33.44  Aligned_cols=24  Identities=21%  Similarity=0.329  Sum_probs=11.1

Q ss_pred             HHHHhHHHHHHHHHHHHHHHhhhc
Q 026318          195 AMENNLISMAREIEKLRAELLNTE  218 (240)
Q Consensus       195 aMEknlisMarEvEKLRaElanae  218 (240)
                      .-++.+=.....-.-|+.+|+.++
T Consensus       221 ~~q~~l~eL~~~~~~L~~~Ias~e  244 (420)
T COG4942         221 ADQKKLEELRANESRLKNEIASAE  244 (420)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHH
Confidence            333334444444444555555555

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=85.17  E-value=37  Score=32.67  Aligned_cols=33  Identities=0%  Similarity=0.173  Sum_probs=19.8

Q ss_pred             hhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhh
Q 026318           60 AIDDNTHLQRELTASKDEIHRLGQIIPKLRADK   92 (240)
Q Consensus        60 LAathvaLrqeL~aaq~El~~l~~~i~~i~ae~   92 (240)
                      ...+..-|.+++..++++|......+.+.+.++
T Consensus       159 ~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~  191 (498)
T TIGR03007       159 SDSAQRFIDEQIKTYEKKLEAAENRLKAFKQEN  191 (498)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            334555666666666666666666666555443

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP

Probab=84.88  E-value=6.3  Score=28.97  Aligned_cols=42  Identities=33%  Similarity=0.582  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 026318          126 EVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARR  177 (240)
Q Consensus       126 e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Ra  177 (240)
                      .+.+|.+.=|.|.++|..|..|+.          +|++++...+.|-.|+=.
T Consensus         4 kid~Ls~dVq~L~~kvdqLs~dv~----------~lr~~v~~ak~EAaRAN~   45 (56)
T PF04728_consen    4 KIDQLSSDVQTLNSKVDQLSSDVN----------ALRADVQAAKEEAARANQ   45 (56)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
Confidence            344555555556666666666643          455555566666666543

The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.

>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins

Probab=84.79  E-value=4.9  Score=30.71  Aligned_cols=44  Identities=20%  Similarity=0.490  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 026318          123 LRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADID  166 (240)
Q Consensus       123 ~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid  166 (240)
                      +..|+..|.....||+.++.....++.+.+.+.+++..+++..+
T Consensus         1 L~kdv~~l~~EkeeL~~klk~~qeel~~~k~~~~~~~~ik~~~e   44 (69)
T PF08912_consen    1 LTKDVANLAKEKEELNNKLKKQQEELQKLKEEEQEIEEIKAQYE   44 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45788999999999999999999999999999888888877544

This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.

>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]

Probab=84.73  E-value=48  Score=33.58  Aligned_cols=121  Identities=29%  Similarity=0.355  Sum_probs=77.2

Q ss_pred             hhhhHhHHHHHhhhhhhhhh--hhcc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------
Q 026318           90 ADKEAHTRELFDRGLKLEVE--LRAS--EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAEN----------  155 (240)
Q Consensus        90 ae~e~q~Rel~ek~~KmEAe--lRa~--e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~----------  155 (240)
                      -|.|-++-.|+.|+.|+|++  ++..  +-||.|..|+-      +..-||=-+-|..|-|.+.++..|.          
T Consensus       154 qeqef~vnKlm~ki~Klen~t~~kq~~leQLRre~V~le------ntlEQEqEalvN~LwKrmdkLe~ekr~Lq~KlDqp  227 (552)
T KOG2129|consen  154 QEQEFFVNKLMNKIRKLENKTLLKQNTLEQLRREAVQLE------NTLEQEQEALVNSLWKRMDKLEQEKRYLQKKLDQP  227 (552)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            46677888999999999976  3333  44555554433      3445555555555555555444332          


Q ss_pred             ----------hhh--------HHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHhH-HHHHHHHHHHHHHHhh
Q 026318          156 ----------KQL--------IAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNL-ISMAREIEKLRAELLN  216 (240)
Q Consensus       156 ----------qqi--------p~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEknl-isMarEvEKLRaElan  216 (240)
                                -.+        .+++.=||.|+-|+-|+|+-+--=.|-+.+.+-|..+=|+.+ -.-+|+-+||--|+..
T Consensus       228 vs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~reen~rlQrkL~~e~er  307 (552)
T KOG2129|consen  228 VSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHREENERLQRKLINELER  307 (552)
T ss_pred             ccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence                      222        246777899999999999988887888888887777766644 2334555555555544

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=84.63  E-value=20  Score=29.19  Aligned_cols=39  Identities=13%  Similarity=0.297  Sum_probs=19.7

Q ss_pred             HHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhh
Q 026318           49 EMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPK   87 (240)
Q Consensus        49 EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~   87 (240)
                      |+..|-.+.+++-..-......+..++.||.........
T Consensus         4 e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~   42 (132)
T PF07926_consen    4 ELSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQE   42 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444455555555566665555444443

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=84.62  E-value=28  Score=30.76  Aligned_cols=125  Identities=18%  Similarity=0.300  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHHHHH
Q 026318           42 EIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVV  121 (240)
Q Consensus        42 ~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~  121 (240)
                      -|..-..||+.|-...++.=....++.+.+-....||.++...+..++        .|++.     -.|-..+.+-..|.
T Consensus        62 ll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~--------~L~~d-----knL~eReeL~~kL~  128 (194)
T PF15619_consen   62 LLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLK--------KLSED-----KNLAEREELQRKLS  128 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHc-----CCchhHHHHHHHHH
Confidence            344555666666666666666666666666666666666555444322        11111     12223455666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 026318          122 QLRAEVQKLNSSRQELTTQIKGLTKDVNRL-EAENKQLIAMRADIDGIRSELVEARRAF  179 (240)
Q Consensus       122 Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~-~~d~qqip~l~aEid~lrqElqr~Raa~  179 (240)
                      .+...++.-...=++|.-++.-.++-+.+. .++...+-.+..++..+..|+.++..-+
T Consensus       129 ~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~kl  187 (194)
T PF15619_consen  129 QLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKL  187 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666666667777888777777664 5789999999999999999999998766

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=84.22  E-value=26  Score=36.58  Aligned_cols=173  Identities=19%  Similarity=0.270  Sum_probs=97.8

Q ss_pred             HHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhH--------hHHH-------HHhhhhhhhhhhh------
Q 026318           53 IISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEA--------HTRE-------LFDRGLKLEVELR------  111 (240)
Q Consensus        53 Ll~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~--------q~Re-------l~ek~~KmEAelR------  111 (240)
                      |..-+-..-+||.  |.-|+||=.=-+.....+..+..+-.-        .+-.       |.+-+.|.+++-+      
T Consensus       331 ~r~~~~~~~ddH~--RDALAAA~kAY~~yk~kl~~vEr~~~~~g~~~d~~rika~VIrG~~l~eal~~~~e~~~p~e~~~  408 (652)
T COG2433         331 LRTLKISVSDDHE--RDALAAAYKAYLAYKPKLEKVERKLPELGIWKDVERIKALVIRGYPLAEALSKVKEEERPREKEG  408 (652)
T ss_pred             HhhcCCCCCCchH--HHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHeecCCcHHHHHHHHHhhhccccccc
Confidence            3444445555664  667777765555554444443322111        1111       2233333333333      


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHH-
Q 026318          112 ASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQI-  190 (240)
Q Consensus       112 a~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~-  190 (240)
                      ..+..+-|+.+...++.++...=+.|..+++.|..++.          .++.||+.|+.++.++|.-++.+...+-+.- 
T Consensus       409 ~~~~e~~ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~e----------e~k~eie~L~~~l~~~~r~~~~~~~~~rei~~  478 (652)
T COG2433         409 TEEEERREITVYEKRIKKLEETVERLEEENSELKRELE----------ELKREIEKLESELERFRREVRDKVRKDREIRA  478 (652)
T ss_pred             cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            22344456666667777766666666666666666544          5667888888888888777775544433321 


Q ss_pred             --HHHHHHHHhHHHHHHHHHHHHHHHhhhcc-cc---ccccccchhhhhhhhh
Q 026318          191 --EQKQAMENNLISMAREIEKLRAELLNTER-RA---CGLGKISFFLGALTWS  237 (240)
Q Consensus       191 --Eq~qaMEknlisMarEvEKLRaElanaek-Ra---~~~~~~g~~~~~~~~~  237 (240)
                        +-.-.++++|..=.++||.|..+|+...+ +.   .|-|+.--.+-.+||.
T Consensus       479 ~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k~~~lE~sG~g~pvk~ve~~t~~  531 (652)
T COG2433         479 RDRRIERLEKELEEKKKRVEELERKLAELRKMRKLELSGKGTPVKVVEKLTLE  531 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcceehhhhhhHH
Confidence              23456888998889999999998877652 11   2223334455566665

>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]

Probab=84.14  E-value=31  Score=31.00  Aligned_cols=97  Identities=16%  Similarity=0.186  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhc----chHHHHH
Q 026318          117 RAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKA----NEEQIEQ  192 (240)
Q Consensus       117 k~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~----~~e~~Eq  192 (240)
                      -.|++++-++++.|..--|.|....-.+..|+.-+.+-+ .+|.|..+|..|+.|.-.-|--++.=|.|    ..+-.+|
T Consensus        78 ~eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~L-t~eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpedk~~  156 (201)
T KOG4603|consen   78 DEELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSAL-TTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPEDKEQ  156 (201)
T ss_pred             hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHH
Confidence            368889999999988888888887777777776555544 48899999999998877666666555544    3566788


Q ss_pred             HHHHHHhHHHHHHHHHHHHHHH
Q 026318          193 KQAMENNLISMAREIEKLRAEL  214 (240)
Q Consensus       193 ~qaMEknlisMarEvEKLRaEl  214 (240)
                      ...|=...++|-|....+=-|+
T Consensus       157 v~~~y~~~~~~wrk~krmf~ei  178 (201)
T KOG4603|consen  157 VYREYQKYCKEWRKRKRMFREI  178 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888899998887766655

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]

Probab=83.68  E-value=42  Score=32.03  Aligned_cols=149  Identities=23%  Similarity=0.280  Sum_probs=89.8

Q ss_pred             hhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHH----HHH
Q 026318           56 ENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQ----KLN  131 (240)
Q Consensus        56 dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q----~L~  131 (240)
                      +-+---.-|..++|-...+++|+.-...--+.+.+|-|.|+-.+-.+..+++++          .++++.|..    ++.
T Consensus        14 E~~ywk~l~~~ykq~f~~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~----------nqrl~~E~e~~Kek~e   83 (333)
T KOG1853|consen   14 EDQYWKLLHHEYKQHFLQMREELNEFQEGSREIEAELESQLDQLETRNRDLETR----------NQRLTTEQERNKEKQE   83 (333)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHH
Confidence            334445568899999999999999999888999999999988888888888864          344444332    333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHH--HHHHHhH---------
Q 026318          132 SSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQK--QAMENNL---------  200 (240)
Q Consensus       132 a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~--qaMEknl---------  200 (240)
                      ..|-+.-.++-.|..||...++-..|+-.-.-|++.----|-++..+-.|-    .+-+||.  |++|+|-         
T Consensus        84 ~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~s----leDfeqrLnqAIErnAfLESELdEk  159 (333)
T KOG1853|consen   84 DQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYS----LEDFEQRLNQAIERNAFLESELDEK  159 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhh----HHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            344444445555555555555544444444444444444444444443331    2334443  6677663         


Q ss_pred             ----HHH---HHHHHHHHHHHhhhc
Q 026318          201 ----ISM---AREIEKLRAELLNTE  218 (240)
Q Consensus       201 ----isM---arEvEKLRaElanae  218 (240)
                          .+|   --|.-.||-||+-..
T Consensus       160 e~llesvqRLkdEardlrqelavr~  184 (333)
T KOG1853|consen  160 EVLLESVQRLKDEARDLRQELAVRT  184 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                222   235555666676544

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]

Probab=83.66  E-value=1.2  Score=47.33  Aligned_cols=45  Identities=22%  Similarity=0.364  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHH--------H-------hhhccccccccccchhhhhhh
Q 026318          189 QIEQKQAMENNLISMAREIEKLRAE--------L-------LNTERRACGLGKISFFLGALT  235 (240)
Q Consensus       189 ~~Eq~qaMEknlisMarEvEKLRaE--------l-------anaekRa~~~~~~g~~~~~~~  235 (240)
                      ..||.+.+.=.+|++.--.|.+|+-        |       -|+-.|-  +++.||++..||
T Consensus       790 fse~vnniKP~i~avt~ACEE~rkSesFs~lLeLvLl~GNyMn~gSrN--a~afgF~is~L~  849 (1102)
T KOG1924|consen  790 FSEQVNNIKPDIVAVTAACEELRKSESFSKLLELVLLVGNYMNSGSRN--AQAFGFNISFLC  849 (1102)
T ss_pred             HHHHHhhcChHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccccccc--chhhccchHHHH
Confidence            3477778888888888888887763        1       2333332  455588887776

>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional

Probab=82.78  E-value=27  Score=37.08  Aligned_cols=76  Identities=20%  Similarity=0.361  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHhHHH------HHHHHHHH
Q 026318          137 LTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLIS------MAREIEKL  210 (240)
Q Consensus       137 Lt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEknlis------MarEvEKL  210 (240)
                      |+.++..|.+|+++--++.-.-|.|+.-+|-|+.+. ++.+.-  |.|.++.-+  .+..-|.++.      |-.++|-+
T Consensus       509 L~eK~~kLk~Efnkkl~ea~n~p~lk~Kle~Lk~~~-~~~~~s--~g~~~a~~L--k~ei~kki~e~~~~~~~kek~ea~  583 (762)
T PLN03229        509 LMEKIEKLKDEFNKRLSRAPNYLSLKYKLDMLNEFS-RAKALS--EKKSKAEKL--KAEINKKFKEVMDRPEIKEKMEAL  583 (762)
T ss_pred             HHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHH-Hhhhhc--ccchhhhhh--hHHHHHHHHHhcccHHHHHHHHHH
Confidence            777899999999999999999999999999998887 444443  323233333  4567788888      88889989


Q ss_pred             HHHHhhh
Q 026318          211 RAELLNT  217 (240)
Q Consensus       211 RaElana  217 (240)
                      .||+.+.
T Consensus       584 ~aev~~~  590 (762)
T PLN03229        584 KAEVASS  590 (762)
T ss_pred             HHHHHhc
Confidence            8888873

>PRK01156 chromosome segregation protein; Provisional

Probab=82.35  E-value=67  Score=33.47  Aligned_cols=24  Identities=13%  Similarity=0.194  Sum_probs=9.1

Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHH
Q 026318          143 GLTKDVNRLEAENKQLIAMRADID  166 (240)
Q Consensus       143 ~ltqeL~r~~~d~qqip~l~aEid  166 (240)
                      .+.++|.....+...+-....+++
T Consensus       309 ~l~~~l~~l~~~l~~~e~~~~~~e  332 (895)
T PRK01156        309 NKKQILSNIDAEINKYHAIIKKLS  332 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333

>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family

Probab=81.84  E-value=40  Score=31.31  Aligned_cols=61  Identities=18%  Similarity=0.260  Sum_probs=30.7

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhhhhh-------hh-cchHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 026318          155 NKQLIAMRADIDGIRSELVEARRAFEFE-------KK-ANEEQIEQKQAMENNLISMAREIEKLRAELL  215 (240)
Q Consensus       155 ~qqip~l~aEid~lrqElqr~Raa~EyE-------KK-~~~e~~Eq~qaMEknlisMarEvEKLRaEla  215 (240)
                      .-++-.++++++.++..+...+.-+.-.       +. .+.++.-..+.=++.|-+...-.+..|.+.+
T Consensus       241 ~P~v~~l~~~i~~l~~~i~~e~~~i~~~~~~~l~~~~~~~~~L~re~~~a~~~y~~~l~r~~~a~~~~~  309 (362)
T TIGR01010       241 NPQVPSLQARIKSLRKQIDEQRNQLSGGLGDSLNEQTADYQRLVLQNELAQQQLKAALTSLQQTRVEAD  309 (362)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5666666677777666666544432110       00 1112222233334555566666777776643

This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.

>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B

Probab=81.52  E-value=15  Score=34.49  Aligned_cols=129  Identities=22%  Similarity=0.225  Sum_probs=63.1

Q ss_pred             hhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 026318           91 DKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRS  170 (240)
Q Consensus        91 e~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrq  170 (240)
                      .+--++|..+--+...|..|.   +.|+--..+..+|++|... +--+.++..|.+||.++.+++.   .--|+|.++..
T Consensus       121 ~~~d~yR~~LK~IR~~E~sl~---p~R~~r~~l~d~I~kLk~k-~P~s~kl~~LeqELvraEae~l---vaEAqL~n~kR  193 (271)
T PF13805_consen  121 DRLDQYRIHLKSIRNREESLQ---PSRDRRRKLQDEIAKLKYK-DPQSPKLVVLEQELVRAEAENL---VAEAQLSNIKR  193 (271)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH--TTTTTHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHh---HHHHHhHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHhh---HHHHHHHHhhH
Confidence            445556666666666665544   4455555556666666543 2235566667777666665554   22245666665


Q ss_pred             HHHHHHHhhhhhhhcchHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhcccccccccc--chhhhhhhhhh
Q 026318          171 ELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTERRACGLGKI--SFFLGALTWSI  238 (240)
Q Consensus       171 Elqr~Raa~EyEKK~~~e~~Eq~qaMEknlisMarEvEKLRaElanaekRa~~~~~~--g~~~~~~~~~~  238 (240)
                      +  ..|.+|.+.=++-.|.-|       +++-+|+=--.|=.+|   +.-+..+|..  -|.++.-|=.|
T Consensus       194 ~--~lKEa~~~~f~Al~E~aE-------K~~Ila~~gk~Ll~ll---dd~pv~PG~~r~~Y~g~~~t~qI  251 (271)
T PF13805_consen  194 Q--KLKEAYSLKFDALIERAE-------KQAILAEYGKRLLELL---DDTPVVPGDTRPPYDGYEQTRQI  251 (271)
T ss_dssp             H--HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHTTS---------TTS-------HHHHHHH
T ss_pred             H--HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhc---cCCCCCCCCCCCCCCChhHHHHH
Confidence            4  566677766665555444       3444444333333333   2223333433  66666555444

>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein

Probab=81.47  E-value=49  Score=31.36  Aligned_cols=34  Identities=26%  Similarity=0.283  Sum_probs=20.1

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHh-hhccccccccc
Q 026318          193 KQAMENNLISMAREIEKLRAELL-NTERRACGLGK  226 (240)
Q Consensus       193 ~qaMEknlisMarEvEKLRaEla-naekRa~~~~~  226 (240)
                      ....+.++-....++.+++..+. +..-+|-..|.
T Consensus       229 ~~~~~~~l~~~~~~l~~~~~~l~~~~~i~AP~dG~  263 (421)
T TIGR03794       229 LETVEARIKEARYEIEELENKLNLNTRIVSQHSGR  263 (421)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCeEEcCCCeE
Confidence            34445566666777777777776 35555544443

Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.

>PRK06569 F0F1 ATP synthase subunit B'; Validated

Probab=81.18  E-value=35  Score=29.46  Aligned_cols=119  Identities=13%  Similarity=0.175  Sum_probs=78.3

Q ss_pred             CCCccchHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhh-hhhhhhhhhHhHHHHHhhhhhhhhhhh
Q 026318           33 HFHPMTLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQI-IPKLRADKEAHTRELFDRGLKLEVELR  111 (240)
Q Consensus        33 ~p~p~~LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~-i~~i~ae~e~q~Rel~ek~~KmEAelR  111 (240)
                      ||.-.+|++|=..-..++..--..+.....-.-...++|..|+.|.+.+..- ..++.+|-+       .+..++|++|+
T Consensus        33 ppI~~iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a~~~-------~~~~~~ea~L~  105 (155)
T PRK06569         33 PKAEEIFNNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLESEFL-------IKKKNLEQDLK  105 (155)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence            4455677777666666666555566666666667777888888887777644 666666555       45677788877


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 026318          112 ASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIR  169 (240)
Q Consensus       112 a~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lr  169 (240)
                      .  .+..|+.-.-..+.   .-|-+.+.++-+|+.++.      .++.-.+|.++-|+
T Consensus       106 ~--~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~i~------~k~~~~~~~~~~~~  152 (155)
T PRK06569        106 N--SINQNIEDINLAAK---QFRTNKSEAIIKLAVNII------EKIAGTKADMNLLQ  152 (155)
T ss_pred             H--HHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHH------HHHhCccccHHHHh
Confidence            5  45566655555555   445667777777887776      55666666666554

>TIGR00634 recN DNA repair protein RecN

Probab=81.18  E-value=62  Score=32.29  Aligned_cols=63  Identities=17%  Similarity=0.358  Sum_probs=34.7

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 026318          113 SEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEA  175 (240)
Q Consensus       113 ~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~  175 (240)
                      .+.+...+..++.-..|......++....+.+.++|.........+..|..+++.++.++..+
T Consensus       303 L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~  365 (563)
T TIGR00634       303 LNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKA  365 (563)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555544555555556666666666666655555555555555555555555444

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.84  E-value=67  Score=33.69  Aligned_cols=126  Identities=20%  Similarity=0.365  Sum_probs=0.0

Q ss_pred             HHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhh------------------hhhHhHHHHHhhhhhhhhhhhcch
Q 026318           53 IISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRA------------------DKEAHTRELFDRGLKLEVELRASE  114 (240)
Q Consensus        53 Ll~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~a------------------e~e~q~Rel~ek~~KmEAelRa~e  114 (240)
                      ||.+-.-|------|.-++..+++||..++.+.+..++                  |+-..=-..+.|+.+||+||+   
T Consensus        41 lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~EesLLqESaakE~~yl~kI~eleneLK---  117 (772)
T KOG0999|consen   41 LLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEEREESLLQESAAKEEYYLQKILELENELK---  117 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHH---


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------------------------hhhHHHHH---HHH
Q 026318          115 PVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAEN-------------------------KQLIAMRA---DID  166 (240)
Q Consensus       115 ~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~-------------------------qqip~l~a---Eid  166 (240)
                      -++.||--++.|-.+|...-+++-.--+.+.-+--|.++|.                         +|+..|+.   |-+
T Consensus       118 q~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~sQVEyE  197 (772)
T KOG0999|consen  118 QLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQSQVEYE  197 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhhhhhhh


Q ss_pred             HHHHHHHHHHHhhhh
Q 026318          167 GIRSELVEARRAFEF  181 (240)
Q Consensus       167 ~lrqElqr~Raa~Ey  181 (240)
                      ++++|+.|+--.+||
T Consensus       198 glkheikRleEe~el  212 (772)
T KOG0999|consen  198 GLKHEIKRLEEETEL  212 (772)
T ss_pred             HHHHHHHHHHHHHHH

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=80.84  E-value=38  Score=29.67  Aligned_cols=15  Identities=33%  Similarity=0.381  Sum_probs=5.6

Q ss_pred             HHHHHhhHHHHHHHh
Q 026318           68 QRELTASKDEIHRLG   82 (240)
Q Consensus        68 rqeL~aaq~El~~l~   82 (240)
                      +.+|..++.+...+.
T Consensus        26 ~~~l~~~~~~~~~l~   40 (302)
T PF10186_consen   26 RSELQQLKEENEELR   40 (302)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333333333333333

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=80.57  E-value=30  Score=28.36  Aligned_cols=88  Identities=15%  Similarity=0.326  Sum_probs=45.4

Q ss_pred             HHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHH
Q 026318           50 MHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQK  129 (240)
Q Consensus        50 iqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~  129 (240)
                      |-.|+..-++-...+-.|-..+.....|+.++...+..++..-+                     ....|+..+..+...
T Consensus        40 i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~---------------------~~ere~~~~~~~~~~   98 (151)
T PF11559_consen   40 IYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLE---------------------ELERELASAEEKERQ   98 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHH
Confidence            44555555555555555555555555555555444443332111                     233444444555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 026318          130 LNSSRQELTTQIKGLTKDVNRLEAENKQL  158 (240)
Q Consensus       130 L~a~RQELt~qvq~ltqeL~r~~~d~qqi  158 (240)
                      |...-..+...+.....|++|.+..++++
T Consensus        99 l~~~~~~~~~~~k~~kee~~klk~~~~~~  127 (151)
T PF11559_consen   99 LQKQLKSLEAKLKQEKEELQKLKNQLQQR  127 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555566666666666666666555544

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	240
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-10
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-10
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	6e-09
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	7e-08
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	8e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	2e-04

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 59.5 bits (144), Expect = 2e-10
 Identities = 30/187 (16%), Positives = 76/187 (40%), Gaps = 3/187 (1%)

Query: 39   LEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRE 98
            +++++     ++    +  +    +      ++   +D+I  +     KL  +++     
Sbjct: 953  MQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEER 1012

Query: 99   LFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQL 158
            + D    L  E   ++ +     +  + + +L    ++     + L K   +LE E+  L
Sbjct: 1013 VSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDL 1072

Query: 159  IAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAEL---L 215
                A++    +EL       E E +A   ++E + + +NN +   RE+E   ++L   L
Sbjct: 1073 HEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDL 1132

Query: 216  NTERRAC 222
             +E+ A 
Sbjct: 1133 ESEKAAR 1139

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 58.7 bits (142), Expect = 3e-10
 Identities = 33/186 (17%), Positives = 74/186 (39%), Gaps = 4/186 (2%)

Query: 38   TLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTR 97
            T + +I+    ++  +  +N     +   L+  ++     +    +    L   K  H  
Sbjct: 980  TADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHES 1039

Query: 98   ELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQ 157
             + +  ++L+ E ++ + +     +L  E   L+    EL  QI  L   + + E E + 
Sbjct: 1040 MISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQA 1099

Query: 158  LIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQA----MENNLISMAREIEKLRAE 213
             +A   D    ++  ++  R  E      +E +E ++A     E     ++ E+E L+ E
Sbjct: 1100 ALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTE 1159

Query: 214  LLNTER 219
            L +T  
Sbjct: 1160 LEDTLD 1165

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 54.8 bits (132), Expect = 6e-09
 Identities = 27/176 (15%), Positives = 73/176 (41%)

Query: 39   LEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRE 98
             +E  +    E+  +  ++    ++   LQ +L A  +      ++  +L A K+     
Sbjct: 869  TKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEI 928

Query: 99   LFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQL 158
            L +   ++E E   S+ ++AE  +++ ++  L    +E     + L  +    + + K++
Sbjct: 929  LHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKM 988

Query: 159  IAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAEL 214
                  ++   ++L + R+  E         + +++    NL  +  + E + +EL
Sbjct: 989  EDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISEL 1044

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 51.8 bits (124), Expect = 7e-08
 Identities = 31/179 (17%), Positives = 71/179 (39%)

Query: 39   LEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRE 98
            L+E+++ +                    L+  L   +  I    +   +L+A+K+   ++
Sbjct: 897  LQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQ 956

Query: 99   LFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQL 158
            + D   +LE E  A + ++ E V    +++K+      +  Q   LTK+   LE     L
Sbjct: 957  MLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDL 1016

Query: 159  IAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNT 217
                A+ +     L + +   E      E ++++++     L  + R++E   ++L   
Sbjct: 1017 TTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQ 1075

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 43.7 bits (103), Expect = 3e-05
 Identities = 24/164 (14%), Positives = 63/164 (38%), Gaps = 7/164 (4%)

Query: 41   EEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELF 100
             E E + + + ++ +++   I +     ++   S+ E+ ++ + +    +D      EL 
Sbjct: 1021 AEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQ 1080

Query: 101  DRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIA 160
             +  +L+ +L   E    E+    A ++   S +     +I+ L   ++ L+ + +   A
Sbjct: 1081 AQIAELKAQLAKKE---EELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKA 1137

Query: 161  MRADIDGIRS----ELVEARRAFEFEKKANEEQIEQKQAMENNL 200
             R   +  +     EL   +   E        Q E + +   + 
Sbjct: 1138 ARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDD 1181

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 42.5 bits (100), Expect = 8e-05
 Identities = 31/159 (19%), Positives = 61/159 (38%), Gaps = 11/159 (6%)

Query: 67   LQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAE 126
               EL  +K+   +    + +L         E      KL+ E      + AE  ++R  
Sbjct: 862  KDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETE----LYAEAEEMRV- 916

Query: 127  VQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIA----MRADIDGIRSELVEARRAFEFE 182
              +L + +QEL   +  +   +   E  ++QL A    M+  +  +  +L E   A +  
Sbjct: 917  --RLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKL 974

Query: 183  KKANEEQIEQKQAMENNLISMAREIEKLRAELLNTERRA 221
            +        + + ME++++ M  +  KL  E    E R 
Sbjct: 975  QLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERV 1013

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 50.5 bits (121), Expect = 2e-07
 Identities = 35/187 (18%), Positives = 70/187 (37%), Gaps = 20/187 (10%)

Query: 40   EEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTREL 99
             ++++I+ R + R    +    +    LQR++     E   L + +  L       T +L
Sbjct: 906  LKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKL 965

Query: 100  FDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLI 159
                      LR SE           E +   +    L  +I  L K++++ + E K + 
Sbjct: 966  R----SDVERLRMSE----------EEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIE 1011

Query: 160  ----AMRADIDGIRSELVEARRAFEFEKKANEEQIEQ--KQAMENNLISMAREIEKLRAE 213
                  + + + + SEL E     + EK+    +I    K+  E     +  E ++L  +
Sbjct: 1012 EWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELD 1071

Query: 214  LLNTERR 220
            L +   R
Sbjct: 1072 LNDERLR 1078

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 15/135 (11%), Positives = 49/135 (36%), Gaps = 6/135 (4%)

Query: 87  KLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTK 146
                 +        + + ++  +R           L+A V      R+ +        +
Sbjct: 851 GYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMM------AKR 904

Query: 147 DVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMARE 206
           ++ +L+ E + +   +    G+ +++++ +R  + + K  +  +E+   +E    +   +
Sbjct: 905 ELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEK 964

Query: 207 IEKLRAELLNTERRA 221
           +      L  +E  A
Sbjct: 965 LRSDVERLRMSEEEA 979

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 4e-06
 Identities = 42/243 (17%), Positives = 80/243 (32%), Gaps = 65/243 (26%)

Query: 33  HFHPMTLE-EEIEIQRREMHRIISENRHAI--D-DNTHLQ------------RELTASKD 76
           H H M  E  E + Q ++   I+S    A   + D   +Q              +  SKD
Sbjct: 3   HHHHMDFETGEHQYQYKD---ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKD 59

Query: 77  EIHRLGQIIPKLRADKEAHTRELFDRGL---------KLEVELRASEPVRAEVVQLRAEV 127
            +    ++   L + +E   ++  +  L          ++ E R    +    ++ R  +
Sbjct: 60  AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119

Query: 128 Q-------KLNSSRQELTTQIKGLTKDVNRLEAEN-----------KQLIAMRADIDGIR 169
                   K N SR +   +++   + +  L               K  +A    +D   
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLR---QALLELRPAKNVLIDGVLGSGKTWVA----LDVCL 172

Query: 170 SELVEARRAFE-F-----EKKANEEQIEQKQA----MENNLISMAREIE--KLRAELLNT 217
           S  V+ +  F+ F        + E  +E  Q     ++ N  S +      KLR   +  
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232

Query: 218 ERR 220
           E R
Sbjct: 233 ELR 235

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 25/172 (14%), Positives = 48/172 (27%), Gaps = 6/172 (3%)

Query: 45   IQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGL 104
            I+R           + ID       +      E  R+     K  A        +  + L
Sbjct: 840  IKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKK-L 898

Query: 105  KLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNR-LEAENKQLIAMRA 163
            +     ++      E       VQ    + +    + + L    N  L +   QL  +  
Sbjct: 899  ENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNY 958

Query: 164  DIDGIRSELVEAR-RAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAEL 214
            +      EL E +   F  +    +   E  +      +   ++IE L    
Sbjct: 959  NGV---PELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIEDLHHHH 1007

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	240
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	97.21
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	96.25
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	95.99
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	95.96
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	95.69
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	95.44
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	95.31
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	94.68
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	94.44
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	94.27
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	93.86
3m91_A	51	Proteasome-associated ATPase; coil COIL alpha heli	90.93
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	89.81
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	88.65
1wt6_A	81	Myotonin-protein kinase; coiled-coil, kinase activ	88.6
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	88.47
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	88.45
3i00_A	120	HIP-I, huntingtin-interacting protein 1; transcrip	88.4
2no2_A	107	HIP-I, huntingtin-interacting protein 1; clathrin	87.71
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	86.76
2w83_C	77	C-JUN-amino-terminal kinase-interacting protein 4;	84.91
3lay_A	175	Zinc resistance-associated protein; salmonella typ	83.48
1jcd_A	52	Major outer membrane lipoprotein; protein folding,	82.47
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	81.89
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	81.35
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	80.62
4e61_A	106	Protein BIM1; EB1-like motif, coiled-coil, spindle	80.4
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	80.31
1x79_B	112	RAB GTPase binding effector protein 1; rabaptin5,	80.07

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=97.21  E-value=0.057  Score=43.24  Aligned_cols=13  Identities=0%  Similarity=0.261  Sum_probs=4.8

Q ss_pred             HHHHHHHHHHHHH
Q 026318           43 IEIQRREMHRIIS   55 (240)
Q Consensus        43 La~Q~~EiqrLl~   55 (240)
                      +..-..+|..+..
T Consensus         8 ~~~l~~~~~~~~~   20 (284)
T 1c1g_A            8 MQMLKLDKENALD   20 (284)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHH
Confidence            3333333333333

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=96.25  E-value=0.012  Score=61.07  Aligned_cols=41  Identities=15%  Similarity=0.246  Sum_probs=17.0

Q ss_pred             hHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHhhHHHHH
Q 026318           39 LEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIH   79 (240)
Q Consensus        39 LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~   79 (240)
                      ++++|..-...+.++-..-..+-.....|++++..++.+++
T Consensus       862 L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~  902 (1184)
T 1i84_S          862 KDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQ  902 (1184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444433333333333444444444444444443

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=95.96  E-value=0.12  Score=53.92  Aligned_cols=124  Identities=12%  Similarity=0.124  Sum_probs=38.6

Q ss_pred             HHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHH
Q 026318           50 MHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQK  129 (240)
Q Consensus        50 iqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~  129 (240)
                      +..|...|..|-..-..|++.|.....+...|...+..+....+.++-+|       +.++...+....|+..+...+.+
T Consensus       916 ~~~l~~~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L-------~~~l~~le~~~~e~~~~~~~v~~  988 (1080)
T 2dfs_A          916 VERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKL-------RSDVERLRMSEEEAKNATNRVLS  988 (1080)
T ss_dssp             -----------------------------------CHHHHHHHHHHHHHH-------HHTHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445556666666666666665555555555555554444444444444       22222222333344444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHhhh
Q 026318          130 LNSSRQELTTQIKGLTKDVNRLEAENKQL-IAMRADIDGIRSELVEARRAFE  180 (240)
Q Consensus       130 L~a~RQELt~qvq~ltqeL~r~~~d~qqi-p~l~aEid~lrqElqr~Raa~E  180 (240)
                      |...=.+|..+++.+++|........+++ -.|...+.+|.+|.+.+|..++
T Consensus       989 L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~ 1040 (1080)
T 2dfs_A          989 LQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKE 1040 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444433333222 1344555556666666655443

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=95.69  E-value=0.93  Score=39.24  Aligned_cols=115  Identities=12%  Similarity=0.156  Sum_probs=69.5

Q ss_pred             HhhHHHHHHHHhhHHHHHHHhhhhhhhhhh---hhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 026318           62 DDNTHLQRELTASKDEIHRLGQIIPKLRAD---KEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELT  138 (240)
Q Consensus        62 athvaLrqeL~aaq~El~~l~~~i~~i~ae---~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt  138 (240)
                      ..-..|..++...+..+..+...+.+++.+   .+..+..+-.++.+.+..+.++. =-.|+..+..|+..+....+.|-
T Consensus        32 ~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~-~~kE~~aL~kEie~~~~~i~~lE  110 (256)
T 3na7_A           32 KDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIK-SERELRSLNIEEDIAKERSNQAN  110 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS-SSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333444444444444444333333332   46667777778888887776654 23578888888888888888888


Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 026318          139 TQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFE  180 (240)
Q Consensus       139 ~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~E  180 (240)
                      .++..++..+.....+   +-.+.++++.++.++...++.++
T Consensus       111 ~eile~~e~ie~~~~~---l~~~~~~l~~~~~~l~~~~~~~~  149 (256)
T 3na7_A          111 REIENLQNEIKRKSEK---QEDLKKEMLELEKLALELESLVE  149 (256)
T ss_dssp             HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888887655544   33445555555555555554443

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=95.44  E-value=1.1  Score=38.66  Aligned_cols=162  Identities=14%  Similarity=0.167  Sum_probs=90.5

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHHH
Q 026318           40 EEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAE  119 (240)
Q Consensus        40 Ee~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~E  119 (240)
                      +.++..-..|+..|-.+=..+-+....++.++...+.++..+...|..+++--+-.-..+ +.+ +   .-|..+++..|
T Consensus        24 ~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l-~~v-~---~~kE~~aL~kE   98 (256)
T 3na7_A           24 EPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKM-SEI-K---SERELRSLNIE   98 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHC-S---SSSHHHHHHHH
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hcc-C---CHHHHHHHHHH
Confidence            333444445555555555555566666666666666666666655555544332221111 111 1   33445677777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHh
Q 026318          120 VVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENN  199 (240)
Q Consensus       120 l~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEkn  199 (240)
                      +..+..++..|...-.++..++..+..++......   +-.++++++..+.++...-+.++-|-.   ....+...+.+.
T Consensus        99 ie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~---l~~~~~~l~~~~~~~~~~~~e~~~e~~---~l~~~r~~l~~~  172 (256)
T 3na7_A           99 EDIAKERSNQANREIENLQNEIKRKSEKQEDLKKE---MLELEKLALELESLVENEVKNIKETQQ---IIFKKKEDLVEK  172 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhc
Confidence            77777777777777777777777777777666544   445566666666666666655553322   222344444443


Q ss_pred             H-HHHHHHHHHHHH
Q 026318          200 L-ISMAREIEKLRA  212 (240)
Q Consensus       200 l-isMarEvEKLRa  212 (240)
                      + -.+-..-+++|.
T Consensus       173 i~~~lL~~Yerir~  186 (256)
T 3na7_A          173 TEPKIYSFYERIRR  186 (256)
T ss_dssp             SCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHH
Confidence            3 234445666665

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=95.31  E-value=0.016  Score=60.24  Aligned_cols=36  Identities=17%  Similarity=0.277  Sum_probs=15.1

Q ss_pred             hHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHhh
Q 026318           39 LEEEIEIQRREMHRIISENRHAIDDNTHLQRELTAS   74 (240)
Q Consensus        39 LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aa   74 (240)
                      ++++|.....++..|-.....|-..-..|++++...
T Consensus       869 l~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e  904 (1184)
T 1i84_S          869 TKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAE  904 (1184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444343433333444444333

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=94.68  E-value=0.21  Score=37.66  Aligned_cols=50  Identities=20%  Similarity=0.326  Sum_probs=44.5

Q ss_pred             hhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318          102 RGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRL  151 (240)
Q Consensus       102 k~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~  151 (240)
                      =-.|.|.|+.-...+-+|+.-+|.++..+.-.|-+|-++|.+|+.||.=.
T Consensus        33 fk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fL   82 (86)
T 3swk_A           33 LREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFL   82 (86)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34678888888889999999999999999999999999999999998743

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=94.44  E-value=0.2  Score=46.78  Aligned_cols=29  Identities=7%  Similarity=0.188  Sum_probs=16.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 026318          158 LIAMRADIDGIRSELVEARRAFEFEKKAN  186 (240)
Q Consensus       158 ip~l~aEid~lrqElqr~Raa~EyEKK~~  186 (240)
                      +-..+.+++.+++|..+.+..++-.|+.-
T Consensus       532 ~~~~~~~~~~~~~~~~~le~~~~~~~~~~  560 (597)
T 3oja_B          532 ADAKQKETEDLEQENIALEKQLDNKRAKQ  560 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhcchhhHHhhhHHHHHHHhhhhhHH
Confidence            33455556666666666665555444433

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=94.27  E-value=0.83  Score=42.57  Aligned_cols=50  Identities=14%  Similarity=0.055  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHhhhhhhhcchHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 026318          168 IRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNT  217 (240)
Q Consensus       168 lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEknlisMarEvEKLRaElana  217 (240)
                      .+++++.-...+++-++-..+.-.+.+.+.+.+..+.+|+.++++++..-
T Consensus       528 ~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l  577 (597)
T 3oja_B          528 RRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQL  577 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            33333333344444345555666667778888888888988998887653

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=93.86  E-value=0.86  Score=47.54  Aligned_cols=56  Identities=11%  Similarity=0.268  Sum_probs=34.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 026318          115 PVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEAR  176 (240)
Q Consensus       115 ~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~R  176 (240)
                      .+..|+..++.+++++.....+|-.+.+.+..+|+      .++..|..|...|+|++..+-
T Consensus       988 ~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~------~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A          988 SLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETE------QLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence            44455556666666666666666666666665555      556666666666666666555

>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A

Probab=90.93  E-value=0.62  Score=32.46  Aligned_cols=43  Identities=19%  Similarity=0.392  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHh
Q 026318           40 EEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLG   82 (240)
Q Consensus        40 Ee~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~   82 (240)
                      |+++..-...+..|..-|.+|+++=-.-|++|...+.+|..|.
T Consensus         8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~La   50 (51)
T 3m91_A            8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG   50 (51)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999998888774

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=89.81  E-value=12  Score=43.69  Aligned_cols=60  Identities=10%  Similarity=0.177  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhccc
Q 026318          161 MRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTERR  220 (240)
Q Consensus       161 l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEknlisMarEvEKLRaElanaekR  220 (240)
                      +++++..+..++..+.+...-=+..=.+.-+..+.++.++-...+|.++|..|+...+++
T Consensus      2012 kr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~k 2071 (3245)
T 3vkg_A         2012 LREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNK 2071 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555555555543333334444555666666666666777776666655444

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=88.65  E-value=29  Score=40.62  Aligned_cols=100  Identities=18%  Similarity=0.267  Sum_probs=46.9

Q ss_pred             hhhhhhhhhhhcc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHHHHHH
Q 026318          101 DRGLKLEVELRAS---EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQ----LIAMRADIDGIRSELV  173 (240)
Q Consensus       101 ek~~KmEAelRa~---e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qq----ip~l~aEid~lrqElq  173 (240)
                      .+-..-|+||...   +|+|++|.++..+..+-.+.-++...+++.+...|+.++.+-..    .-.|+.|++....=+.
T Consensus      1994 ~~k~~~e~dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~ 2073 (3245)
T 3vkg_A         1994 VQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVD 2073 (3245)
T ss_dssp             HHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334455566554   46777777777666555555555555555555555555444321    2233444444444444


Q ss_pred             HHHHh---hhhhhhcchHHHHHHHHHHHhH
Q 026318          174 EARRA---FEFEKKANEEQIEQKQAMENNL  200 (240)
Q Consensus       174 r~Raa---~EyEKK~~~e~~Eq~qaMEknl  200 (240)
                      ||-.-   ..-||.--.+.+++.+.--+||
T Consensus      2074 rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L 2103 (3245)
T 3vkg_A         2074 RSIALLDNLNSERGRWEQQSENFNTQMSTV 2103 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhccccHHHHHHHHHHHHHhc
Confidence            44332   3344444444444444433443

>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}

Probab=88.60  E-value=1.6  Score=33.19  Aligned_cols=44  Identities=20%  Similarity=0.275  Sum_probs=34.2

Q ss_pred             hhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318          104 LKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKD  147 (240)
Q Consensus       104 ~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqe  147 (240)
                      .-|++||++-..+..||-+++++.+.+.+--+|--.+-+.|..|
T Consensus        17 SALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e   60 (81)
T 1wt6_A           17 EALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAH   60 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999888876555555555555444

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=88.47  E-value=7.8  Score=30.51  Aligned_cols=110  Identities=20%  Similarity=0.304  Sum_probs=51.7

Q ss_pred             HhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 026318           94 AHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELV  173 (240)
Q Consensus        94 ~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElq  173 (240)
                      -+|+.+-+.+.+|+..+...+..|.|+..-   ..+|...+.+|..++++-+.-+.-+..-...+-.-+.+++.--+++ 
T Consensus        13 ~E~~~~~eel~~lke~l~k~e~~r~ele~~---~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el-   88 (129)
T 2fxo_A           13 KEMASMKEEFTRLKEALEKSEARRKELEEK---MVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEM-   88 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-
Confidence            344444455555555554444444444332   2244444455555555444444444444444444444444333333 


Q ss_pred             HHHHhhhhhhhcchHHHHHHHHHHHhHHHHHHHHHH
Q 026318          174 EARRAFEFEKKANEEQIEQKQAMENNLISMAREIEK  209 (240)
Q Consensus       174 r~Raa~EyEKK~~~e~~Eq~qaMEknlisMarEvEK  209 (240)
                        -.-+|-+...|.++....+-|+.++-.+-..++-
T Consensus        89 --~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led  122 (129)
T 2fxo_A           89 --NKRLEDEEEMNAELTAKKRKLEDECSELKRDIDD  122 (129)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              3445555555666666666666554444444443

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=88.45  E-value=5  Score=39.58  Aligned_cols=92  Identities=9%  Similarity=0.155  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH-HHHHHHHHHHHhhhhhhhcchHHHHHHHH
Q 026318          117 RAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADID-GIRSELVEARRAFEFEKKANEEQIEQKQA  195 (240)
Q Consensus       117 k~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid-~lrqElqr~Raa~EyEKK~~~e~~Eq~qa  195 (240)
                      +.=|..++..+..+...+.+--.-++.++..|..-+...++.-....|+- .|++-|+.+       |..=..++-+.++
T Consensus        63 tkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyL-------KekVdnQlsnIrv  135 (562)
T 3ghg_A           63 TNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVL-------KRKVIEKVQHIQL  135 (562)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence            33344444444455555555555566666666544444444444444443 444444444       3334456688899


Q ss_pred             HHHhHHHHHHHHHHHHHHHh
Q 026318          196 MENNLISMAREIEKLRAELL  215 (240)
Q Consensus       196 MEknlisMarEvEKLRaEla  215 (240)
                      +++||-....+|.||-.+|.
T Consensus       136 LQsnLedq~~kIQRLEvDId  155 (562)
T 3ghg_A          136 LQKNVRAQLVDMKRLEVDID  155 (562)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999988774

>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A

Probab=88.40  E-value=3.3  Score=33.09  Aligned_cols=83  Identities=23%  Similarity=0.340  Sum_probs=47.0

Q ss_pred             hhhhhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 026318           88 LRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDG  167 (240)
Q Consensus        88 i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~  167 (240)
                      ...++|..|..|+-          .++.+|.|+..+..|.|..+.   .|.++|-.|..||.-.+...|+   ...|.+.
T Consensus         9 ~~d~rD~~Ie~Lkr----------eie~lk~ele~l~~E~q~~v~---ql~~~i~~Le~eL~e~r~~~q~---a~~e~e~   72 (120)
T 3i00_A            9 NKDEKDHLIERLYR----------EISGLKAQLENMKTESQRVVL---QLKGHVSELEADLAEQQHLRQQ---AADDCEF   72 (120)
T ss_dssp             -CCTHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred             CCCcHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence            45677766655442          234666777777666666554   5778888888888877755443   4566777


Q ss_pred             HHHHHHHHH-----------Hhhhhhhhcc
Q 026318          168 IRSELVEAR-----------RAFEFEKKAN  186 (240)
Q Consensus       168 lrqElqr~R-----------aa~EyEKK~~  186 (240)
                      |+.|+..++           ...|.|+|+.
T Consensus        73 Lr~e~~~l~~~~~~~~~~q~~~~e~E~kAq  102 (120)
T 3i00_A           73 LRAELDELRRQREDTEKAQRSLSEIERKAQ  102 (120)
T ss_dssp             HHHHHHHHHTTCC-----------------
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            777777653           3467888763

>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}

Probab=87.71  E-value=8.4  Score=30.00  Aligned_cols=78  Identities=13%  Similarity=0.216  Sum_probs=56.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHH
Q 026318          116 VRAEVVQLRAEVQKLNSSRQELTTQIKGLTK-DVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQK  193 (240)
Q Consensus       116 lk~El~Q~r~e~q~L~a~RQELt~qvq~ltq-eL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~  193 (240)
                      +-+.|-..+.....+...+++|..+|+.+.. -..+++..+.+|-.++.||..=..|++++..+++-=...+.....+.
T Consensus        13 ~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~   91 (107)
T 2no2_A           13 VTKQVSMARQAQVDLEREKKELEDSLERISDQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQSEANWAAEF   91 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555566666777788888888888763 33467788899999999999999999998886665555555554444

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=86.76  E-value=14  Score=31.63  Aligned_cols=39  Identities=13%  Similarity=0.193  Sum_probs=25.3

Q ss_pred             hHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHhhHHH
Q 026318           39 LEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDE   77 (240)
Q Consensus        39 LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~E   77 (240)
                      ||..|..-..=+..|-..|.+|...+..+|--+...+.|
T Consensus        47 LE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e   85 (189)
T 2v71_A           47 LEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQ   85 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555555566667777777777777766666666655

>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}

Probab=84.91  E-value=4.7  Score=30.36  Aligned_cols=69  Identities=19%  Similarity=0.380  Sum_probs=37.6

Q ss_pred             HHHHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHH
Q 026318           47 RREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAE  126 (240)
Q Consensus        47 ~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e  126 (240)
                      -.|+..|+.+|..|-+|+-||-    .++.+|                        +.++|       .|-.|-..++.|
T Consensus         8 gkevEnLi~EN~eLl~TKNaLn----vvk~DL------------------------I~rvd-------ELt~E~e~l~~E   52 (77)
T 2w83_C            8 GREVENLILENTQLLETKNALN----IVKNDL------------------------IAKVD-------ELTCEKDVLQGE   52 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH----HHHHHH------------------------HHHHH-------HHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHH----HHHHHH------------------------HHHHH-------HHHhHHHHHHHH
Confidence            3578888888888888887762    222211                        22222       445555556666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 026318          127 VQKLNSSRQELTTQIKGLTKDVNR  150 (240)
Q Consensus       127 ~q~L~a~RQELt~qvq~ltqeL~r  150 (240)
                      +..+..+++-+..++..+.+||.|
T Consensus        53 l~s~~~~~~r~~~ri~elEeElkr   76 (77)
T 2w83_C           53 LEAVKQAKLKLEEKNRELEEELRK   76 (77)
T ss_dssp             HHHHHHHHHHHHHHC---------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc
Confidence            667777777777777777777665

>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}

Probab=83.48  E-value=6.6  Score=33.05  Aligned_cols=34  Identities=12%  Similarity=0.210  Sum_probs=24.1

Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 026318          147 DVNRLEAENKQLIAMRADIDGIRSELVEARRAFE  180 (240)
Q Consensus       147 eL~r~~~d~qqip~l~aEid~lrqElqr~Raa~E  180 (240)
                      .+..-..|-.+|.++..||..||+++...|..|.
T Consensus       104 L~~a~~~DeakI~aL~~Ei~~Lr~qL~~~R~k~~  137 (175)
T 3lay_A          104 LLTASSPDTAKINAVAKEMESLGQKLDEQRVKRD  137 (175)
T ss_dssp             HHTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333445777888888888888888877766543

>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A

Probab=82.47  E-value=5.5  Score=27.74  Aligned_cols=41  Identities=20%  Similarity=0.311  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 026318          127 VQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARR  177 (240)
Q Consensus       127 ~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Ra  177 (240)
                      ++.|.+-=|.|+.||..|+.|+.          +++.++...+.|-.|+=.
T Consensus         6 i~~Lss~V~~L~~kVdqLssdV~----------al~~~v~~ak~eA~RAN~   46 (52)
T 1jcd_A            6 ADQASSDAQTANAKADQASNDAN----------AARSDAQAAKDDAARANQ   46 (52)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
Confidence            34444444555555555555544          445555566666665543

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=81.89  E-value=19  Score=29.06  Aligned_cols=83  Identities=12%  Similarity=0.236  Sum_probs=48.9

Q ss_pred             hHhHHHHHhh--hhhhhhhhhcc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhHHHHH
Q 026318           93 EAHTRELFDR--GLKLEVELRAS---EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAE----NKQLIAMRA  163 (240)
Q Consensus        93 e~q~Rel~ek--~~KmEAelRa~---e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d----~qqip~l~a  163 (240)
                      |.+|+++-.+  ...+-.+--++   =.+=.|+.+++.++..|...-+++..++..+..||..++-.    .+.+-.++.
T Consensus        38 d~km~ei~~~~~~~~l~~~r~aVLaALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~  117 (138)
T 3hnw_A           38 NNKITEFNKEESYRRMSAELRTDMMYLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKS  117 (138)
T ss_dssp             HHHHHHHTTCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566666643  66665554443   34667888888877777777777766666666666554432    233444444


Q ss_pred             HHHHHHHHHHHH
Q 026318          164 DIDGIRSELVEA  175 (240)
Q Consensus       164 Eid~lrqElqr~  175 (240)
                      +++.|+.++.++
T Consensus       118 ~~~~l~~~~~~l  129 (138)
T 3hnw_A          118 EINKYQKNIVKL  129 (138)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            444444444444

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=81.35  E-value=18  Score=28.44  Aligned_cols=85  Identities=15%  Similarity=0.241  Sum_probs=33.9

Q ss_pred             HHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318           69 RELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDV  148 (240)
Q Consensus        69 qeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL  148 (240)
                      .++..++.||..++..|.++++|-+.    +--....||.-|...+.-      -..+++.+...-.+|-.+++.+..|+
T Consensus        31 ~~l~~~k~Ei~elrr~iq~L~~el~~----l~~~~~sLE~~l~e~e~~------~~~~l~~~q~~i~~lE~eL~~~r~em  100 (131)
T 3tnu_A           31 ELVQSGKSEISELRRTMQNLEIELQS----QLSMKASLENSLEETKGR------YCMQLAQIQEMIGSVEEQLAQLRCEM  100 (131)
T ss_dssp             ----------CHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556666766666666666555332    222334445444433221      11122223333334445555555555


Q ss_pred             HHHHHhhhhhHHHHH
Q 026318          149 NRLEAENKQLIAMRA  163 (240)
Q Consensus       149 ~r~~~d~qqip~l~a  163 (240)
                      ++..-|-|.+-.+|-
T Consensus       101 ~~ql~EYq~Ll~vKl  115 (131)
T 3tnu_A          101 EQQNQEYKILLDVKT  115 (131)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            555555555554443

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=80.62  E-value=25  Score=29.70  Aligned_cols=64  Identities=23%  Similarity=0.275  Sum_probs=37.2

Q ss_pred             hhhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026318           90 ADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRA-------EVQKLNSSRQELTTQIKGLTKDVNRLEAENK  156 (240)
Q Consensus        90 ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~-------e~q~L~a~RQELt~qvq~ltqeL~r~~~d~q  156 (240)
                      +--|.-+|+|-++...++..-   +.+-.|+.++++       +-..-...-.||.++|++|..||.+...-..
T Consensus        44 ~~~E~~~rELq~~~~~L~~~k---~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~  114 (168)
T 3o0z_A           44 SQLESLNRELQERNRILENSK---SQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLE  114 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445667778888887777543   233344444444       3333333335777777777777776665333

>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}

Probab=80.40  E-value=9.1  Score=30.24  Aligned_cols=55  Identities=11%  Similarity=0.143  Sum_probs=42.7

Q ss_pred             hhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 026318          110 LRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRAD  164 (240)
Q Consensus       110 lRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aE  164 (240)
                      |-++-++.+||.+.+.++..|...-++|...|..+.+|=.=.-+-+..|-.|-.+
T Consensus         3 ~~s~~al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEiLcQe   57 (106)
T 4e61_A            3 LGSLVAIQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIEILVHT   57 (106)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566789999999999999999999999999999998865555555554444433

>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2

Probab=80.07  E-value=21  Score=28.39  Aligned_cols=94  Identities=18%  Similarity=0.204  Sum_probs=64.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHH
Q 026318          114 EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQK  193 (240)
Q Consensus       114 e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~  193 (240)
                      +.+-.++.|++-+..++...|++|....+.-+.|=      ..||..|..-+.+-.+.|.-+|.+|.-=|.   +--+|+
T Consensus         9 ~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~------k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~---~vq~qL   79 (112)
T 1x79_B            9 KKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDS------SHQISALVLRAQASEILLEELQQGLSQAKR---DVQEQM   79 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence            56778889999999999999999999966655553      467888999999999999999998865444   445566


Q ss_pred             HHHHHhHHHHHHHHHHHHHHHhh
Q 026318          194 QAMENNLISMAREIEKLRAELLN  216 (240)
Q Consensus       194 qaMEknlisMarEvEKLRaElan  216 (240)
                      +..=..-=.+..|+.+|-+|=-+
T Consensus        80 ~~Lt~~Re~V~~eL~rLQ~eNd~  102 (112)
T 1x79_B           80 AVLMQSREQVSEELVRLQKDNDS  102 (112)
T ss_dssp             HHHHHHHHHHHTC----------
T ss_pred             HHHHHHHHHHHHHHHHHHhhccc
Confidence            65555555677777777765433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00