Citrus Sinensis ID: 026354

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240
MSLLSDLLNLNLSESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILEDYRDCWSCAFFRSQANSG
cccHHHHHcccccccccEEEEEEEEEcccccccccccEEccccccccccccccccccccccccccccccEEEEEEEEEEcccccccEEEEEEEEEccccccccccHHHHHHHHHHcccccccccEEEcEEEEEEEEEcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccEEEEccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccc
ccHHHHHHcccccccccEEEEEEEEEEcccccccccccccccccccHHHcccEccccccccccccccccEEEEEEEEccccccccccEEEEEEccccccccccccHHHHHHHHHHcHHHHcccccccEEEEEEEccccccccccccccccccccccEEEccccccEcHHHHHHHHHHHHHHccEEEEccccEEccccEEEEcccccccccHHHHHHHHHHHHHHHHHccEEEEEcccccc
MSLLSDLLNLNLSESTDKIIAEYIWIggsgmdmrskartlpgpvsdpsklpkwnydgsstgqapgedsevilypqaifkdpfrrgnnilvmcdaytpagepiptnkrhaaakifshsdvvaeepwygiEQEYTLLQKdvkwplgwpiggypgpqgpyycgvgadkawgrdivDSHYKACLYAGinisgingevmpgqwefqvgpavgisagdQLWVARYILEDYRdcwscaffrsqansg
MSLLSDLLNLNLSESTDKIIAEYIWIGGSGMDMRSKARTLpgpvsdpsklpKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILEDYRDCWSCAFFRSQANSG
MsllsdllnlnlsesTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLgwpiggypgpqgpyycgvgADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILEDYRDCWSCAFFRSQANSG
*******LNLNLSESTDKIIAEYIWIGG*****************************************VILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILEDYRDCWSCAFFR******
*SLLSDLLNLNLSESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILEDYRDCWSCAFFRSQANS*
MSLLSDLLNLNLSESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYD********GEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILEDYRDCWSCAFFRSQANSG
MSLLSDLLNLNLSESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSS*****GEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILEDYRDCWSCAFFRSQ****
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MSLLSDLLNLNLSESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILEDYRDCWSCAFFRSQANSG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query240 2.2.26 [Sep-21-2011]
P32289 356 Glutamine synthetase nodu N/A no 0.925 0.623 0.927 1e-122
Q56WN1 356 Glutamine synthetase cyto yes no 0.925 0.623 0.914 1e-121
P04078 356 Glutamine synthetase cyto N/A no 0.925 0.623 0.909 1e-120
Q42899 356 Glutamine synthetase cyto N/A no 0.925 0.623 0.905 1e-120
P12424 356 Glutamine synthetase OS=N N/A no 0.925 0.623 0.914 1e-120
P51119 356 Glutamine synthetase cyto yes no 0.925 0.623 0.905 1e-119
P04770 356 Glutamine synthetase PR-1 N/A no 0.925 0.623 0.887 1e-118
P52782 353 Glutamine synthetase nodu N/A no 0.925 0.628 0.882 1e-118
P51118 356 Glutamine synthetase cyto no no 0.925 0.623 0.882 1e-118
Q43785 356 Glutamine synthetase nodu N/A no 0.925 0.623 0.882 1e-117
>sp|P32289|GLNA_VIGAC Glutamine synthetase nodule isozyme OS=Vigna aconitifolia PE=2 SV=1 Back     alignment and function desciption
 Score =  437 bits (1124), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 206/222 (92%), Positives = 218/222 (98%)

Query: 1   MSLLSDLLNLNLSESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSST 60
           MSLLSDL+NLNLS++T+KIIAEYIWIGGSG+D+RSKARTLPGPVSDPSKLPKWNYDGSST
Sbjct: 1   MSLLSDLINLNLSDTTEKIIAEYIWIGGSGLDLRSKARTLPGPVSDPSKLPKWNYDGSST 60

Query: 61  GQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVV 120
           GQAPGEDSEVI+YPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRH AAKIFSH DVV
Sbjct: 61  GQAPGEDSEVIIYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHNAAKIFSHPDVV 120

Query: 121 AEEPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDSHYKACL 180
           AEEPWYGIEQEYTLLQKDV WPLGWP+GG+PGPQGPYYCG GADKA+GRDIVD+HYKACL
Sbjct: 121 AEEPWYGIEQEYTLLQKDVNWPLGWPVGGFPGPQGPYYCGAGADKAFGRDIVDAHYKACL 180

Query: 181 YAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILE 222
           YAGINISGINGEVMPGQWEFQVGPAVGISAGD+LWVARYILE
Sbjct: 181 YAGINISGINGEVMPGQWEFQVGPAVGISAGDELWVARYILE 222

Vigna aconitifolia (taxid: 3918)
EC: 6EC: .EC: 3EC: .EC: 1EC: .EC: 2
>sp|Q56WN1|GLN11_ARATH Glutamine synthetase cytosolic isozyme 1-1 OS=Arabidopsis thaliana GN=GLN1-1 PE=1 SV=2 Back     alignment and function description
>sp|P04078|GLNA1_MEDSA Glutamine synthetase cytosolic isozyme OS=Medicago sativa PE=2 SV=1 Back     alignment and function description
>sp|Q42899|GLNA1_LOTJA Glutamine synthetase cytosolic isozyme OS=Lotus japonicus GN=GLN1 PE=2 SV=2 Back     alignment and function description
>sp|P12424|GLNA_NICPL Glutamine synthetase OS=Nicotiana plumbaginifolia PE=2 SV=1 Back     alignment and function description
>sp|P51119|GLNA2_VITVI Glutamine synthetase cytosolic isozyme 2 OS=Vitis vinifera GN=GS1-2 PE=2 SV=1 Back     alignment and function description
>sp|P04770|GLNA1_PHAVU Glutamine synthetase PR-1 OS=Phaseolus vulgaris PE=2 SV=1 Back     alignment and function description
>sp|P52782|GLNA_LUPLU Glutamine synthetase nodule isozyme OS=Lupinus luteus PE=3 SV=1 Back     alignment and function description
>sp|P51118|GLNA1_VITVI Glutamine synthetase cytosolic isozyme 1 OS=Vitis vinifera GN=GS1-1 PE=2 SV=1 Back     alignment and function description
>sp|Q43785|GLNA3_MEDSA Glutamine synthetase nodule isozyme OS=Medicago sativa GN=GS1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query240
2213877 356 glutamine synthetase [Hevea brasiliensis 0.925 0.623 0.932 1e-121
417060 356 RecName: Full=Glutamine synthetase nodul 0.925 0.623 0.927 1e-120
599656 356 glutamate--ammonia ligase [Brassica napu 0.925 0.623 0.923 1e-120
159138927 356 glutamine synthetase [Gossypium raimondi 0.925 0.623 0.932 1e-119
297805322 356 ATGSR1 [Arabidopsis lyrata subsp. lyrata 0.925 0.623 0.914 1e-119
159138921 356 glutamine synthetase [Gossypium herbaceu 0.925 0.623 0.932 1e-119
159138923 356 glutamine synthetase [Gossypium hirsutum 0.925 0.623 0.932 1e-119
15240288 356 glutamine synthetase cytosolic isozyme 1 0.925 0.623 0.914 1e-119
121368 356 RecName: Full=Glutamine synthetase cytos 0.925 0.623 0.909 1e-119
449456217 356 PREDICTED: glutamine synthetase cytosoli 0.925 0.623 0.914 1e-119
>gi|2213877|gb|AAB61597.1| glutamine synthetase [Hevea brasiliensis] Back     alignment and taxonomy information
 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 207/222 (93%), Positives = 219/222 (98%)

Query: 1   MSLLSDLLNLNLSESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSST 60
           MSLLSDL+NLNLS++TDKIIAEYIWIGGSGMDMRSKARTL GPVSDPSKLPKWNYDGSST
Sbjct: 1   MSLLSDLINLNLSDTTDKIIAEYIWIGGSGMDMRSKARTLSGPVSDPSKLPKWNYDGSST 60

Query: 61  GQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVV 120
           GQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSH DVV
Sbjct: 61  GQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHPDVV 120

Query: 121 AEEPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDSHYKACL 180
           AEEPWYGIEQEYTLLQ+DVKWP+GWP+GGYPGPQGPYYC +GADK++GRD+VDSHYK+CL
Sbjct: 121 AEEPWYGIEQEYTLLQRDVKWPIGWPLGGYPGPQGPYYCSIGADKSFGRDVVDSHYKSCL 180

Query: 181 YAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILE 222
           YAGINISGINGEVMPGQWEFQVGPAVGISAGD+LWVARYILE
Sbjct: 181 YAGINISGINGEVMPGQWEFQVGPAVGISAGDELWVARYILE 222

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|417060|sp|P32289.1|GLNA_VIGAC RecName: Full=Glutamine synthetase nodule isozyme; Short=GS; AltName: Full=Glutamate--ammonia ligase gi|170637|gb|AAA34239.1| glutamine synthetase [Vigna aconitifolia] gi|1094850|prf||2106409A Gln synthetase Back     alignment and taxonomy information
>gi|599656|emb|CAA58118.1| glutamate--ammonia ligase [Brassica napus] Back     alignment and taxonomy information
>gi|159138927|gb|ABW89463.1| glutamine synthetase [Gossypium raimondii] Back     alignment and taxonomy information
>gi|297805322|ref|XP_002870545.1| ATGSR1 [Arabidopsis lyrata subsp. lyrata] gi|297316381|gb|EFH46804.1| ATGSR1 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|159138921|gb|ABW89460.1| glutamine synthetase [Gossypium herbaceum] gi|159138933|gb|ABW89466.1| glutamine synthetase [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|159138923|gb|ABW89461.1| glutamine synthetase [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|15240288|ref|NP_198576.1| glutamine synthetase cytosolic isozyme 1-1 [Arabidopsis thaliana] gi|108935995|sp|Q56WN1.2|GLN11_ARATH RecName: Full=Glutamine synthetase cytosolic isozyme 1-1; AltName: Full=Glutamate--ammonia ligase GLN1;1; Short=GLN1;1 gi|16226387|gb|AAL16154.1|AF428386_1 AT5g37600/K12B20_50 [Arabidopsis thaliana] gi|16930509|gb|AAL31940.1|AF419608_1 AT5g37600/K12B20_50 [Arabidopsis thaliana] gi|9757970|dbj|BAB08306.1| glutamine synthetase [Arabidopsis thaliana] gi|19310527|gb|AAL84997.1| AT5g37600/K12B20_50 [Arabidopsis thaliana] gi|23397222|gb|AAN31893.1| putative glutamate-ammonia ligase [Arabidopsis thaliana] gi|332006826|gb|AED94209.1| glutamine synthetase cytosolic isozyme 1-1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|121368|sp|P04078.1|GLNA1_MEDSA RecName: Full=Glutamine synthetase cytosolic isozyme; AltName: Full=Glutamate--ammonia ligase gi|19605|emb|CAA27570.1| glutamine synthetase [Medicago sativa] gi|225302|prf||1211328A synthetase,Gln Back     alignment and taxonomy information
>gi|449456217|ref|XP_004145846.1| PREDICTED: glutamine synthetase cytosolic isozyme-like [Cucumis sativus] gi|449516009|ref|XP_004165040.1| PREDICTED: glutamine synthetase cytosolic isozyme-like [Cucumis sativus] gi|374676432|gb|AEZ56958.1| glutamine synthetase [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query240
TAIR|locus:2151739 356 GSR 1 "glutamine synthase clon 0.862 0.581 0.835 6.1e-94
TAIR|locus:2174175 356 GLN1;4 "glutamine synthetase 1 0.862 0.581 0.811 4.5e-91
TAIR|locus:2088580 354 GLN1.3 "glutamine synthetase 1 0.862 0.584 0.806 6.5e-90
TAIR|locus:2198080 353 GLN1;5 "glutamine synthetase 1 0.862 0.586 0.763 8.9e-86
TAIR|locus:2165897 430 GS2 "glutamine synthetase 2" [ 0.862 0.481 0.729 5.8e-82
FB|FBgn0001145 369 Gs2 "Glutamine synthetase 2" [ 0.825 0.536 0.547 1.1e-53
WB|WBGene00001604 388 gln-3 [Caenorhabditis elegans 0.829 0.512 0.529 3.5e-52
SGD|S000006239 370 GLN1 "Glutamine synthetase (GS 0.816 0.529 0.519 4.4e-52
CGD|CAL0001010 373 GLN1 [Candida albicans (taxid: 0.833 0.536 0.5 1.3e-50
ASPGD|ASPL0000016342 357 glnA [Emericella nidulans (tax 0.825 0.554 0.490 5.2e-49
TAIR|locus:2151739 GSR 1 "glutamine synthase clone R1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 935 (334.2 bits), Expect = 6.1e-94, P = 6.1e-94
 Identities = 173/207 (83%), Positives = 184/207 (88%)

Query:    16 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQ 75
             TDKIIAEYIW+GGSGMDMRSKARTLPGPV+DPS+LPKWNYDGSSTGQAPGEDSEVILYPQ
Sbjct:    16 TDKIIAEYIWVGGSGMDMRSKARTLPGPVTDPSQLPKWNYDGSSTGQAPGEDSEVILYPQ 75

Query:    76 AIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLL 135
             AIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAK+FS+ DV AE PWYGIEQEYTLL
Sbjct:    76 AIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKVFSNPDVAAEVPWYGIEQEYTLL 135

Query:   136 QKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMP 195
             QKDVKWP+                   ADK++GRD+VDSHYKACLYAGINISGINGEVMP
Sbjct:   136 QKDVKWPVGWPIGGYPGPQGPYYCGIGADKSFGRDVVDSHYKACLYAGINISGINGEVMP 195

Query:   196 GQWEFQVGPAVGISAGDQLWVARYILE 222
             GQWEFQVGPAVGISA D++WVARYILE
Sbjct:   196 GQWEFQVGPAVGISAADEIWVARYILE 222
GO:0003824 "catalytic activity" evidence=IEA
GO:0004356 "glutamate-ammonia ligase activity" evidence=IEA;ISS;IDA
GO:0005737 "cytoplasm" evidence=ISM
GO:0005829 "cytosol" evidence=TAS
GO:0022626 "cytosolic ribosome" evidence=IDA
GO:0005618 "cell wall" evidence=IDA
GO:0042128 "nitrate assimilation" evidence=TAS
GO:0005515 "protein binding" evidence=IPI
GO:0010150 "leaf senescence" evidence=IEP
GO:0005507 "copper ion binding" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
GO:0009744 "response to sucrose stimulus" evidence=RCA
GO:0009749 "response to glucose stimulus" evidence=RCA
GO:0009750 "response to fructose stimulus" evidence=RCA
TAIR|locus:2174175 GLN1;4 "glutamine synthetase 1;4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088580 GLN1.3 "glutamine synthetase 1.3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2198080 GLN1;5 "glutamine synthetase 1;5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2165897 GS2 "glutamine synthetase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0001145 Gs2 "Glutamine synthetase 2" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
WB|WBGene00001604 gln-3 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
SGD|S000006239 GLN1 "Glutamine synthetase (GS)" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
CGD|CAL0001010 GLN1 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
ASPGD|ASPL0000016342 glnA [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O22504GLNA1_DAUCA6, ., 3, ., 1, ., 20.81980.92080.6278N/Ano
Q43785GLNA3_MEDSA6, ., 3, ., 1, ., 20.88280.9250.6235N/Ano
P00965GLNA3_PHAVU6, ., 3, ., 1, ., 20.87830.9250.6235N/Ano
P14656GLN11_ORYSJ6, ., 3, ., 1, ., 20.87830.9250.6235yesno
P04771GLNA2_PHAVU6, ., 3, ., 1, ., 20.89180.9250.6235N/Ano
P08282GLNA1_PEA6, ., 3, ., 1, ., 20.87210.91250.6169N/Ano
Q43066GLNA4_PEA6, ., 3, ., 1, ., 20.86480.9250.6218N/Ano
P12424GLNA_NICPL6, ., 3, ., 1, ., 20.91440.9250.6235N/Ano
P14636GLNA3_LUPAN6, ., 3, ., 1, ., 20.85580.9250.7047N/Ano
P23712GLNA_LACSA6, ., 3, ., 1, ., 20.83110.96250.6452N/Ano
P38562GLNA4_MAIZE6, ., 3, ., 1, ., 20.87830.9250.6253N/Ano
P38563GLNA5_MAIZE6, ., 3, ., 1, ., 20.83330.9250.6218N/Ano
P38560GLNA2_MAIZE6, ., 3, ., 1, ., 20.82880.92080.6005N/Ano
P38561GLNA3_MAIZE6, ., 3, ., 1, ., 20.87380.9250.6235N/Ano
O04867GLNA1_ALNGL6, ., 3, ., 1, ., 20.87380.9250.6235N/Ano
Q56WN1GLN11_ARATH6, ., 3, ., 1, ., 20.91440.9250.6235yesno
P51119GLNA2_VITVI6, ., 3, ., 1, ., 20.90540.9250.6235yesno
P52782GLNA_LUPLU6, ., 3, ., 1, ., 20.88280.9250.6288N/Ano
P52783GLNA_PINSY6, ., 3, ., 1, ., 20.81440.92080.6190N/Ano
Q42899GLNA1_LOTJA6, ., 3, ., 1, ., 20.90540.9250.6235N/Ano
P38559GLNA1_MAIZE6, ., 3, ., 1, ., 20.83330.9250.6218N/Ano
P04078GLNA1_MEDSA6, ., 3, ., 1, ., 20.90990.9250.6235N/Ano
P32289GLNA_VIGAC6, ., 3, ., 1, ., 20.92790.9250.6235N/Ano
P07694GLNA3_PEA6, ., 3, ., 1, ., 20.86480.9250.6218N/Ano
P04770GLNA1_PHAVU6, ., 3, ., 1, ., 20.88730.9250.6235N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.3.10.963
3rd Layer6.3.1.20.946

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query240
PLN02284 354 PLN02284, PLN02284, glutamine synthetase 1e-180
PLN03036 432 PLN03036, PLN03036, glutamine synthetase; Provisio 1e-147
pfam00120 259 pfam00120, Gln-synt_C, Glutamine synthetase, catal 4e-40
COG0174 443 COG0174, GlnA, Glutamine synthetase [Amino acid tr 5e-40
pfam0395184 pfam03951, Gln-synt_N, Glutamine synthetase, beta- 1e-17
TIGR00653 459 TIGR00653, GlnA, glutamine synthetase, type I 1e-06
>gnl|CDD|177922 PLN02284, PLN02284, glutamine synthetase Back     alignment and domain information 
 Score =  498 bits (1285), Expect = e-180
 Identities = 209/222 (94%), Positives = 216/222 (97%)

Query: 1   MSLLSDLLNLNLSESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSST 60
           MSLLSDL+NLNLS+STDKIIAEYIWIGGSGMD+RSKARTLPGPV+DPSKLPKWNYDGSST
Sbjct: 1   MSLLSDLINLNLSDSTDKIIAEYIWIGGSGMDLRSKARTLPGPVTDPSKLPKWNYDGSST 60

Query: 61  GQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVV 120
           GQAPGEDSEVILYPQAIFKDPFR GNNILVMCDAYTPAGEPIPTNKR  AAKIFSH DV 
Sbjct: 61  GQAPGEDSEVILYPQAIFKDPFRGGNNILVMCDAYTPAGEPIPTNKRAKAAKIFSHPDVA 120

Query: 121 AEEPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDSHYKACL 180
           AEEPWYGIEQEYTLLQKDVKWPLGWP+GGYPGPQGPYYCGVGADKA+GRDIVD+HYKACL
Sbjct: 121 AEEPWYGIEQEYTLLQKDVKWPLGWPVGGYPGPQGPYYCGVGADKAFGRDIVDAHYKACL 180

Query: 181 YAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILE 222
           YAGINISGINGEVMPGQWEFQVGP VGISAGDQLWVARYILE
Sbjct: 181 YAGINISGINGEVMPGQWEFQVGPVVGISAGDQLWVARYILE 222

Length = 354
>gnl|CDD|178603 PLN03036, PLN03036, glutamine synthetase; Provisional Back     alignment and domain information
>gnl|CDD|215731 pfam00120, Gln-synt_C, Glutamine synthetase, catalytic domain Back     alignment and domain information
>gnl|CDD|223252 COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|217811 pfam03951, Gln-synt_N, Glutamine synthetase, beta-Grasp domain Back     alignment and domain information
>gnl|CDD|233073 TIGR00653, GlnA, glutamine synthetase, type I Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 240
PLN03036 432 glutamine synthetase; Provisional 100.0
PLN02284 354 glutamine synthetase 100.0
COG0174 443 GlnA Glutamine synthetase [Amino acid transport an 100.0
TIGR00653 460 GlnA glutamine synthetase, type I. Alternate name: 100.0
PRK09469 469 glnA glutamine synthetase; Provisional 100.0
TIGR03105 435 gln_synth_III glutamine synthetase, type III. This 100.0
KOG0683 380 consensus Glutamine synthetase [Amino acid transpo 100.0
PF00120 259 Gln-synt_C: Glutamine synthetase, catalytic domain 100.0
PF0395184 Gln-synt_N: Glutamine synthetase, beta-Grasp domai 99.66
COG3968 724 Uncharacterized protein related to glutamine synth 99.38
TIGR02050 287 gshA_cyan_rel uncharacterized enzyme. This family 96.72
PLN02611 482 glutamate--cysteine ligase 96.46
TIGR01436 446 glu_cys_lig_pln glutamate--cysteine ligase, plant 96.1
PRK13517 373 carboxylate-amine ligase; Provisional 96.0
PRK13516 373 gamma-glutamyl:cysteine ligase; Provisional 95.8
PRK13515 371 carboxylate-amine ligase; Provisional 95.26
PF04107 288 GCS2: Glutamate-cysteine ligase family 2(GCS2); In 95.14
PRK13518 357 carboxylate-amine ligase; Provisional 94.93
TIGR02048 376 gshA_cyano glutamate--cysteine ligase, cyanobacter 91.93
TIGR03444 390 gshA_related glutamate--cysteine ligase family pro 90.07
PF06877104 RraB: Regulator of ribonuclease activity B; InterP 84.58
cd0486981 ACT_GcvR_2 ACT domains that comprise the Glycine C 84.57
>PLN03036 glutamine synthetase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=5.4e-59  Score=428.23  Aligned_cols=239  Identities=73%  Similarity=1.327  Sum_probs=217.4

Q ss_pred             ChhhHHHhcCCCCCCCCeEEEEEEEEcCCCCceeeeeeeCCCCCCCCCCCCccccccCCCCCCCCCCCcEEEEceeeEec
Q 026354            1 MSLLSDLLNLNLSESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKD   80 (240)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~v~~~~~D~~G~~~R~K~~~~~~~~~~~~~~~~~~~d~~~~g~~~~~~~D~~l~PD~~~~l   80 (240)
                      |+.+.+|++|+..++++++.++|+|+|.+||-+|||++.++..++.+++++.|+||||++++..++++|++++||.++++
T Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~yiw~~g~~~dlrgk~r~~~~~~~~~~~~~~w~fDGSs~g~a~~~~sD~~l~PDTl~~~  140 (432)
T PLN03036         61 VNRVEDLLNLDTTPYTDRIIAEYIWIGGSGIDLRSKSRTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKD  140 (432)
T ss_pred             hhhHHHHhhhcccccCCeEEEEEEEeCCCCCCCCCCeEEeCccccccccCCceeeecCccCCCcCCCCCEEEEccEEEEC
Confidence            46788999999999999999999999999977999999998777888889899999999998889999999999999999


Q ss_pred             CCCCCCeEEEEEEEECCCCCCCCCChHHHHHHHHHHHhhcCCeeEEeeeeeEEEEecCCCCCCCCCCCCCCCCCCCCccc
Q 026354           81 PFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCG  160 (240)
Q Consensus        81 Pw~~~~~a~vl~d~~~~~G~p~~~~PR~~L~r~l~~l~~~Gl~~~~g~E~EF~L~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (240)
                      ||+.+++++|+||+|+.||+|++.|||++|++++++++.+|+++++|+|+|||||+.+.+.+.+++..+.|.+.++||+.
T Consensus       141 Pw~~~~~a~Vlcd~y~~dG~P~~~dpR~~L~~vl~~~~~~g~~p~~G~E~EF~Lf~~~~~~~~G~~~~~~p~p~g~yy~~  220 (432)
T PLN03036        141 PFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNKKVVDEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCG  220 (432)
T ss_pred             CcCCCCeEEEEEEEECCCCCCCCCCHHHHHHHHHHHhcccCCeEEEEeeeEEEEEEcccccccCCCCCCccCCCCCcCCC
Confidence            99775699999999999999999999999999999999999999999999999998653223455543466788888877


Q ss_pred             CCcchHHHHHHHHHHHHHHHHcCCeEeeeecCcCCCeeeeecCCChhhHHHHHHHHHHHHHHHHHHHcCC-ceeeccCCC
Q 026354          161 VGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILEDYRDCWSC-AFFRSQANS  239 (240)
Q Consensus       161 ~~~~~~~~~~i~~~l~~~l~~~GI~ve~~h~E~gpGQ~Ei~l~~~~~l~aAD~~~~~r~~ik~vA~~~Gl-aTFmPKp~~  239 (240)
                      .+.+..+.++++++++++|+.+||+|+++|+|+|||||||++.|+++|+|||++++||++||+||++||+ +||||||+.
T Consensus       221 ~~~d~~~~~~i~~~i~~a~~~~GI~Ie~~~~E~gpGQ~Ei~l~~~d~L~aAD~~~l~R~ivk~VA~~~Gl~ATFMPKP~~  300 (432)
T PLN03036        221 AGADKSFGRDISDAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYILERITEQAGVVLTLDPKPIE  300 (432)
T ss_pred             chhhhhhHHHHHHHHHHHHHHCCCCeEEEEcCcCCCceEEecCCChHHHHHHHHHHHHHHHHHHHHHhCCEEEEcCCcCC
Confidence            7666666789999999999999999999999999999999999999999999999999999999999999 899999964

>PLN02284 glutamine synthetase Back     alignment and domain information
>COG0174 GlnA Glutamine synthetase [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00653 GlnA glutamine synthetase, type I Back     alignment and domain information
>PRK09469 glnA glutamine synthetase; Provisional Back     alignment and domain information
>TIGR03105 gln_synth_III glutamine synthetase, type III Back     alignment and domain information
>KOG0683 consensus Glutamine synthetase [Amino acid transport and metabolism] Back     alignment and domain information
>PF00120 Gln-synt_C: Glutamine synthetase, catalytic domain; InterPro: IPR008146 Glutamine synthetase (6 Back     alignment and domain information
>PF03951 Gln-synt_N: Glutamine synthetase, beta-Grasp domain; InterPro: IPR008147 Glutamine synthetase (6 Back     alignment and domain information
>COG3968 Uncharacterized protein related to glutamine synthetase [General function prediction only] Back     alignment and domain information
>TIGR02050 gshA_cyan_rel uncharacterized enzyme Back     alignment and domain information
>PLN02611 glutamate--cysteine ligase Back     alignment and domain information
>TIGR01436 glu_cys_lig_pln glutamate--cysteine ligase, plant type Back     alignment and domain information
>PRK13517 carboxylate-amine ligase; Provisional Back     alignment and domain information
>PRK13516 gamma-glutamyl:cysteine ligase; Provisional Back     alignment and domain information
>PRK13515 carboxylate-amine ligase; Provisional Back     alignment and domain information
>PF04107 GCS2: Glutamate-cysteine ligase family 2(GCS2); InterPro: IPR006336 Also known as gamma-glutamylcysteine synthetase and gamma-ECS (6 Back     alignment and domain information
>PRK13518 carboxylate-amine ligase; Provisional Back     alignment and domain information
>TIGR02048 gshA_cyano glutamate--cysteine ligase, cyanobacterial, putative Back     alignment and domain information
>TIGR03444 gshA_related glutamate--cysteine ligase family protein Back     alignment and domain information
>PF06877 RraB: Regulator of ribonuclease activity B; InterPro: IPR009671 This entry occurs in several hypothetical bacterial proteins of around 120 residues in length Back     alignment and domain information
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query240
2d3a_A 356 Crystal Structure Of The Maize Glutamine Synthetase 1e-96
3fky_A 370 Crystal Structure Of The Glutamine Synthetase Gln1d 9e-54
2ojw_A 384 Crystal Structure Of Human Glutamine Synthetase In 1e-50
2uu7_A 381 Crystal Structure Of Apo Glutamine Synthetase From 1e-50
>pdb|2D3A|A Chain A, Crystal Structure Of The Maize Glutamine Synthetase Complexed With Adp And Methionine Sulfoximine Phosphate Length = 356 Back     alignment and structure 
Iteration: 1

 Score =  349 bits (895), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 169/207 (81%), Positives = 182/207 (87%)
Query: 16  TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQ 75
           T+KIIAEYIWIGGSGMD+RSKARTLPGPV+DPSKLPKWNYDGSSTGQAPGEDSEVILYPQ
Sbjct: 16  TEKIIAEYIWIGGSGMDLRSKARTLPGPVTDPSKLPKWNYDGSSTGQAPGEDSEVILYPQ 75
Query: 76  AIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLL 135
           AIFKDPFRRGNNILVMCD YTPAGEPIPTNKR++AAKIFS  +V AEEPWYGIEQEYTLL
Sbjct: 76  AIFKDPFRRGNNILVMCDCYTPAGEPIPTNKRYSAAKIFSSPEVAAEEPWYGIEQEYTLL 135
Query: 136 QKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMP 195
           QKD  WPL                   A+K++GRDIVD+HYKACLYAGINISGINGEVMP
Sbjct: 136 QKDTNWPLGWPIGGFPGPQGPYYCGIGAEKSFGRDIVDAHYKACLYAGINISGINGEVMP 195
Query: 196 GQWEFQVGPAVGISAGDQLWVARYILE 222
           GQWEFQVGP+VGIS+GDQ+WVARYILE
Sbjct: 196 GQWEFQVGPSVGISSGDQVWVARYILE 222
>pdb|3FKY|A Chain A, Crystal Structure Of The Glutamine Synthetase Gln1deltan18 From The Yeast Saccharomyces Cerevisiae Length = 370 Back     alignment and structure
>pdb|2OJW|A Chain A, Crystal Structure Of Human Glutamine Synthetase In Complex With Adp And Phosphate Length = 384 Back     alignment and structure
>pdb|2UU7|A Chain A, Crystal Structure Of Apo Glutamine Synthetase From Dog ( Canis Familiaris) Length = 381 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query240
2d3a_A 356 Glutamine synthetase; ligase; HET: P3S ADP; 2.63A 1e-122
2ojw_A 384 Glutamine synthetase; amino-acid biosynthesis, lig 1e-105
3fky_A 370 Glutamine synthetase; beta-grAsp, catalytic domain 1e-101
>2d3a_A Glutamine synthetase; ligase; HET: P3S ADP; 2.63A {Zea mays} PDB: 2d3b_A* 2d3c_A* Length = 356 Back     alignment and structure
 Score =  350 bits (899), Expect = e-122
 Identities = 195/222 (87%), Positives = 215/222 (96%)

Query: 1   MSLLSDLLNLNLSESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSST 60
           M+ L+DL+NLNLS++T+KIIAEYIWIGGSGMD+RSKARTLPGPV+DPSKLPKWNYDGSST
Sbjct: 1   MACLTDLVNLNLSDTTEKIIAEYIWIGGSGMDLRSKARTLPGPVTDPSKLPKWNYDGSST 60

Query: 61  GQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVV 120
           GQAPGEDSEVILYPQAIFKDPFRRGNNILVMCD YTPAGEPIPTNKR++AAKIFS  +V 
Sbjct: 61  GQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDCYTPAGEPIPTNKRYSAAKIFSSPEVA 120

Query: 121 AEEPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDSHYKACL 180
           AEEPWYGIEQEYTLLQKD  WPLGWPIGG+PGPQGPYYCG+GA+K++GRDIVD+HYKACL
Sbjct: 121 AEEPWYGIEQEYTLLQKDTNWPLGWPIGGFPGPQGPYYCGIGAEKSFGRDIVDAHYKACL 180

Query: 181 YAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILE 222
           YAGINISGINGEVMPGQWEFQVGP+VGIS+GDQ+WVARYILE
Sbjct: 181 YAGINISGINGEVMPGQWEFQVGPSVGISSGDQVWVARYILE 222
>2ojw_A Glutamine synthetase; amino-acid biosynthesis, ligase, structural GENO structural genomics consortium, SGC; HET: ADP; 2.05A {Homo sapiens} PDB: 2qc8_A* 2uu7_A Length = 384 Back     alignment and structure
>3fky_A Glutamine synthetase; beta-grAsp, catalytic domain, acetylation, cytoplasm, ligase, UBL conjugation; HET: FLC; 2.95A {Saccharomyces cerevisiae} Length = 370 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query240
3fky_A 370 Glutamine synthetase; beta-grAsp, catalytic domain 100.0
2d3a_A 356 Glutamine synthetase; ligase; HET: P3S ADP; 2.63A 100.0
2ojw_A 384 Glutamine synthetase; amino-acid biosynthesis, lig 100.0
3qaj_A 444 Glutamine synthetase; AMP-PCP, ACP, ligase; HET: G 100.0
3ng0_A 473 Glutamine synthetase; GSI, nitrogen metabolism, sy 100.0
4hpp_A 443 Probable glutamine synthetase; glutamine synthase 100.0
1f52_A 468 Glutamine synthetase; ADP, MPD, ligase; HET: ADP; 100.0
4acf_A 486 Glutamine synthetase 1; ligase, nucleotide-binding 100.0
2j9i_A 421 Glutamate-ammonia ligase domain-containing protein 100.0
3o6x_A 729 Glutamine synthetase; type III, beta barrel,dodeca 100.0
2gwd_A 449 Glutamate cysteine ligase; disulfide bridges, glut 96.05
1r8g_A 372 Hypothetical protein YBDK; structural genomics, un 93.31
>3fky_A Glutamine synthetase; beta-grAsp, catalytic domain, acetylation, cytoplasm, ligase, UBL conjugation; HET: FLC; 2.95A {Saccharomyces cerevisiae} Back     alignment and structure
Probab=100.00  E-value=8.4e-62  Score=441.13  Aligned_cols=231  Identities=53%  Similarity=1.042  Sum_probs=200.2

Q ss_pred             hhhHHHhcCCCCCCCCeEEEEEEEEcCCCCceeeeeeeCCCCCCCCCCCCccccccCCCCCCCCCCCcEEEEceeeEecC
Q 026354            2 SLLSDLLNLNLSESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDP   81 (240)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~v~~~~~D~~G~~~R~K~~~~~~~~~~~~~~~~~~~d~~~~g~~~~~~~D~~l~PD~~~~lP   81 (240)
                      .++.+||+|   ++.++++|+++|+|++| ++|||+++++.+.+.+++++.|+||||++++..++++|++|+||.++++|
T Consensus        10 ~~~~~~~~l---~~~~i~~v~~~~~D~~G-~lR~K~~~~~~~~~~~~~~~~~~fDGss~g~~~~~~sD~~l~Pdt~~~~P   85 (370)
T 3fky_A           10 QILQKYLEL---DQRGRIIAEYVWIDGTG-NLRSKGRTLKKRITSIDQLPEWNFDGSSTNQAPGHDSDIYLKPVAYYPDP   85 (370)
T ss_dssp             --------------CCCEEEEEEEECSSS-CEEEEEEEESSCCCSGGGSCCEEECGGGTTSSCCCC--EEEEEEEEEECT
T ss_pred             HHHHHHhCc---ccCCeEEEEEEEEcCCC-CeEEEEEECccccchHHhCCccccCCcccccccCCCCCeeEeeeEEEEcC
Confidence            467889999   78999999999999999 99999999998888888888899999999888899999999999999999


Q ss_pred             CCCCCeEEEEEEEECCCCCCCCCChHHHHHHHHHHHhhcCCeeEEeeeeeEEEEecCCCCCCCCCCCCCCCCCCCCcccC
Q 026354           82 FRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGV  161 (240)
Q Consensus        82 w~~~~~a~vl~d~~~~~G~p~~~~PR~~L~r~l~~l~~~Gl~~~~g~E~EF~L~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (240)
                      |+++++++|+||++++||+|++.|||++|+|++++++  |+++++|+|+|||||+.+. ++.+++..+.|.++++||+..
T Consensus        86 w~~~~~a~vlcd~~~~dG~P~~~~pR~iLkr~~~~~~--g~~~~~G~E~EF~Lf~~~~-~~~~~p~~~~p~~~g~yy~~~  162 (370)
T 3fky_A           86 FRRGDNIVVLAACYNNDGTPNKFNHRHEAAKLFAAHK--DEEIWFGLEQEYTLFDMYD-DVYGWPKGGYPAPQGPYYCGV  162 (370)
T ss_dssp             TTCTTCEEEEEEEECTTSSBCTTCCHHHHHHHHHHTG--GGCCEEEEEEEEEEECTTS-SBTTCCTTSBCSCSSSCTTCC
T ss_pred             CCCCCeEEEEEEEEcCCCCCCCCCHHHHHHHHHHHhc--CCCceEEeeeEEEEEccCC-CcccCCCCCccCCCCcccccc
Confidence            9986699999999999999999999999999999877  9999999999999998764 244666555778888998776


Q ss_pred             CcchHHHHHHHHHHHHHHHHcCCeEeeeecCcCCCeeeeecCCChhhHHHHHHHHHHHHHHHHHHHcCC-ceeeccCCC
Q 026354          162 GADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILEDYRDCWSC-AFFRSQANS  239 (240)
Q Consensus       162 ~~~~~~~~~i~~~l~~~l~~~GI~ve~~h~E~gpGQ~Ei~l~~~~~l~aAD~~~~~r~~ik~vA~~~Gl-aTFmPKp~~  239 (240)
                      +....+.++++++++++|+++||+|+++|||+|||||||++.|+++|+|||++++||++||+||++||+ +||||||+.
T Consensus       163 ~~~~~~~~~i~~~i~~~l~~~Gi~ve~~h~E~~pGQ~Ei~~~~~~~l~aAD~~~~~K~~vk~vA~~~G~~ATFmpKP~~  241 (370)
T 3fky_A          163 GAGKVYARDMIEAHYRACLYAGLEISGINAEVMPSQWEFQVGPCTGIDMGDQLWMARYFLHRVAEEFGIKISFHPKPLK  241 (370)
T ss_dssp             STTTCSCHHHHHHHHHHHHHHTCCEEEEEECSSTTEEEEEEEEEETHHHHHHHHHHHHHHHHHHHTTTCEEECCSCSSS
T ss_pred             chhhHHHHHHHHHHHHHHHHcCCCeeeeecCcCCCceEEecCCCCHHHHHHHHHHHHHHHHHHHHHhCcEEEEcccccC
Confidence            654445688999999999999999999999999999999999999999999999999999999999999 899999985
>2d3a_A Glutamine synthetase; ligase; HET: P3S ADP; 2.63A {Zea mays} PDB: 2d3b_A* 2d3c_A* Back     alignment and structure
>2ojw_A Glutamine synthetase; amino-acid biosynthesis, ligase, structural GENO structural genomics consortium, SGC; HET: ADP; 2.05A {Homo sapiens} PDB: 2qc8_A* 2uu7_A Back     alignment and structure
>3ng0_A Glutamine synthetase; GSI, nitrogen metabolism, synec ligase; HET: ANP; 2.80A {Synechocystis SP} Back     alignment and structure
>4hpp_A Probable glutamine synthetase; glutamine synthase homolog, glutamate, polyamine, ligase; HET: GLU; 2.50A {Pseudomonas aeruginosa} Back     alignment and structure
>1f52_A Glutamine synthetase; ADP, MPD, ligase; HET: ADP; 2.49A {Salmonella typhimurium} SCOP: d.15.9.1 d.128.1.1 PDB: 1f1h_A* 1fpy_A* 1lgr_A* 2lgs_A* 2gls_A Back     alignment and structure
>4acf_A Glutamine synthetase 1; ligase, nucleotide-binding, TRI-substituted IMID TAUT state, RV2220, GLNA1; HET: 46B P3S; 2.00A {Mycobacterium tuberculosis} PDB: 2wgs_A* 2whi_A* 3zxr_A* 3zxv_A* 2bvc_A* 1hto_A* 1htq_A* Back     alignment and structure
>2j9i_A Glutamate-ammonia ligase domain-containing protein 1; 17.00A {Mus musculus} Back     alignment and structure
>3o6x_A Glutamine synthetase; type III, beta barrel,dodecamer, ligas; HET: P3S ADP; 3.50A {Bacteroides fragilis} Back     alignment and structure
>2gwd_A Glutamate cysteine ligase; disulfide bridges, glutathione biosynthesis, beta-hairpin, R regulation; HET: GLU; 2.09A {Brassica juncea} PDB: 2gwc_A* Back     alignment and structure
>1r8g_A Hypothetical protein YBDK; structural genomics, unknown function, carboxylate-amine ligase, structure 2 function project, S2F; 2.15A {Escherichia coli} SCOP: d.128.1.3 PDB: 1tt4_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query240
d1f52a2 368 Glutamine synthetase, C-terminal domain {Salmonell 100.0
d2bvca2 374 Glutamine synthetase, C-terminal domain {Mycobacte 99.98
d1f52a1100 Glutamine synthetase, N-terminal domain {Salmonell 99.71
d2bvca1100 Glutamine synthetase, N-terminal domain {Mycobacte 99.69
d1r8ga_ 368 Carboxylate-amine ligase YbdK {Escherichia coli [T 95.71
>d1f52a2 d.128.1.1 (A:101-468) Glutamine synthetase, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Glutamine synthetase/guanido kinase
superfamily: Glutamine synthetase/guanido kinase
family: Glutamine synthetase catalytic domain
domain: Glutamine synthetase, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=1.9e-33  Score=252.56  Aligned_cols=136  Identities=19%  Similarity=0.204  Sum_probs=105.2

Q ss_pred             CCChHHHHHHHHHHHhhcCCee--EEeeeeeEEEEecCC--------------CC--------CCCCCCCCCCCCCCCCc
Q 026354          103 PTNKRHAAAKIFSHSDVVAEEP--WYGIEQEYTLLQKDV--------------KW--------PLGWPIGGYPGPQGPYY  158 (240)
Q Consensus       103 ~~~PR~~L~r~l~~l~~~Gl~~--~~g~E~EF~L~~~~~--------------~~--------~~~~~~~~~~~~~~~~~  158 (240)
                      +.|||++|||++++++++|+.+  .+|+|+|||||+...              ..        ..+......+...+.||
T Consensus         1 ~~dPR~iLkr~~~~l~~~G~~~~~~~g~E~EF~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (368)
T d1f52a2           1 DRDPRSIAKRAEDYLRATGIADTVLFGPEPEFFLFDDIRFGASISGSHVAIDDIEGAWNSSTKYEGGNKGHRPGVKGGYF   80 (368)
T ss_dssp             TTCHHHHHHHHHHHHHHHTSCSEEEEEEEEEEEEESEEEEEEETTEEEEEEECTTCGGGGGCCCTTCCCCCCCCTTCCSS
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCceEEEeceEEEEEeccccccCcCCCccccCCccccccCCCcccCCCCCCccccCCcee
Confidence            4699999999999999999954  569999999996421              00        00000001223445666


Q ss_pred             ccCCcchHHHHHHHHHHHHHHHHcCCeEeeeecCcC-CCeeeeecCCChhhHHHHHHHHHHHHHHHHHHHcCC-ceeecc
Q 026354          159 CGVGADKAWGRDIVDSHYKACLYAGINISGINGEVM-PGQWEFQVGPAVGISAGDQLWVARYILEDYRDCWSC-AFFRSQ  236 (240)
Q Consensus       159 ~~~~~~~~~~~~i~~~l~~~l~~~GI~ve~~h~E~g-pGQ~Ei~l~~~~~l~aAD~~~~~r~~ik~vA~~~Gl-aTFmPK  236 (240)
                      +....+.  ..+++..+.+.|+.+||+|+++|+|+| ||||||+++|.++|+|||+++++|++||+||++||+ +|||||
T Consensus        81 ~~~~~~~--~~~~~~~i~~~l~~~Gi~ve~~~~E~~~~gq~Ei~~~~~~~l~aAD~~~~~k~~ik~iA~~~Gl~atFmpK  158 (368)
T d1f52a2          81 PVPPVDS--AQDIRSEMCLVMEQMGLVVEAHHHEVATAGQNEVATRFNTMTKKADEIQIYKYVVHNVAHRFGKTATFMPK  158 (368)
T ss_dssp             BCTTSSC--CHHHHHHHHHHHHHTTCCEEEEEECSSTTTEEEEEECCEEHHHHHHHHHHHHHHHHHHHHHTTCEEECCSC
T ss_pred             eeeccch--HHHHHHHHHHHHHhhccCeeeeecccccCCceeecCCCCchHHHHHHHHHHHHHHHHHHHHhcceeeEecc
Confidence            6666443  234444455559999999999999999 699999999999999999999999999999999999 899999


Q ss_pred             CCCC
Q 026354          237 ANSG  240 (240)
Q Consensus       237 p~~~  240 (240)
                      |+.+
T Consensus       159 P~~~  162 (368)
T d1f52a2         159 PMFG  162 (368)
T ss_dssp             SSTT
T ss_pred             cCCC
Confidence            9753
>d2bvca2 d.128.1.1 (A:105-478) Glutamine synthetase, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1f52a1 d.15.9.1 (A:1-100) Glutamine synthetase, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d2bvca1 d.15.9.1 (A:5-104) Glutamine synthetase, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1r8ga_ d.128.1.3 (A:) Carboxylate-amine ligase YbdK {Escherichia coli [TaxId: 562]} Back     information, alignment and structure