Citrus Sinensis ID: 026386

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------24
Protein Sequence
MALQICLALSISSHNSLNHSPMSSSPSTLISFSVQTKKKTVVELSSLRLSKRELCLSSFVLILNGLYPKLSKASLPEEMELQRYTDSNEGFTLLRPSSWIKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQFVADKLIQAEKRKESTIDTELIGASERSGHGGLKVYEFEYKVDSSRGGLKRIFSAAFVASKKLYLLNITHSDKPESPLDTHTRMMLEEVLHSFDAAPTT
Secondary Structure (PSIPRED)
ccccccHHHcccccccccccccccccccccEEEEEccccccHHccccHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEcccccEEEEcccccEEcccccccEEEEccccccccEEEEEEccccccccccccHHHHHHHHHHHHHcccccccEEEEEcEEEEEcccEEEEEEEEEEEccccccEEEEEEEEEEccEEEEEEEEEcccccccccHHHHHHHHHHHccEEccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHccccccccccccccccccccEEEEcccccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccEEEcccccEEEEcccccEEEccccccEEEEccccccccEEEEEcccccccHHHcccHHHHHHHHHHHHcccccccEEEEEEcccEcccccEEEEEEEEEEEccccccEEEEEEEEEEccEEEEEEEEccccccccccHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
MALQICLALSisshnslnhspmssspstlisFSVQTKKKTVVELSSLRLSKRELCLSSFVLILNglypklskaslpeemelqrytdsnegftllrpsswikvdkAGATVLFEEankgtnnlgvvvnpvrvaslgefgtpqfVADKLIQAEKrkestidteligasersghgglkvYEFEYkvdssrgglkRIFSAAFVASKKLYLLNithsdkpespldthtRMMLEEVLhsfdaaptt
Flexible Loop (DISEMBL)
MALQICLALSISSHNSLNHSPMSSSPSTLISFSVQTKKKTVVELsslrlskreLCLSSFVLILNGLYPKLSKASLPEEMELQRYTDSNEGFTLLRPSSWIKVDKAGATVLFEeankgtnnlgvVVNPVRVASLGEFGTPQFVADKLIQaekrkestidteligasersghgglkVYEFEYKVDSSRGGLKRIFSAAFVASKKLYLLNITHSDKPESPLDTHTRMMLEEVLHSFDAAPTT
Low Complexity Region (SEG)
MALQICLAlsisshnslnhspmssspstlisfsVQTKKKTVVelsslrlskrelclssFVLILNGLYPKLSKASLPEEMELQRYTDSNEGFTLLRPSSWIKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQFVADKLIQAEKRKESTIDTELIGASERSGHGGLKVYEFEYKVDSSRGGLKRIFSAAFVASKKLYLLNITHSDKPESPLDTHTRMMLEEVLHSFDAAPTT
Disordered region (IsUnstruct)
****ICLA*****************************KKTVVELSSLRLSKRELCLSSFVLILNGLYPKLS************Y***NEGFTLLRPSSWIKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQFVADKLIQA***********LI******GHGGLKVYEFEYKVDSSRGGLKRIFSAAFVASKKLYLLNIT******************************
Disordered Region (DISOPRED)
****************************************************ELCLSSFVLILNGLYPKLSKASLPEEMELQRYTDSNEGFTLLRPSSWIKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQFVADKLIQAEK*******************GGLKVYEFEYKVDSSRGGLKRIFSAAFVASKKLYLLNITHSDKPES***THTRMMLEEVLHSFDAAP**
Disordered Region (DISEMBL)
MALQICLALSISSHNS*************ISFSVQTKKKTVVELSSLRLSKRELCLSSFVLILNGLYPKLSKASLPEEMELQRYTDSNEGFTLLRPSSWIKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQFVADKLIQAEKRKESTIDTELIGASERSGHGGLKVYEFEYKVDSSRGGLKRIFSAAFVASKKLYLLNITHSDKPESPLDTHTRMMLEEVLHSFDAAPTT
Disordered Region (DISPRO)
**LQICLALSISSH********SSSPSTLISFSVQTKKKTVVELSSLRLSKRELCLSSFVLILNGLYPKLSKASLPEEMELQRYTDSNEGFTLLRPSSWIKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQFVADKLIQAEKRKESTIDTELIGASERSGHGGLKVYEFEYKVDSSRGGLKRIFSAAFVASKKLYLLNITHSDKPESPLDTHTRMMLEEVLHSFDAA***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MALQICLALSISSHNSLNHSPMSSSPSTLISFSVQTKKKTVVELSSLRLSKRELCLSSFVLILNGLYPKLSKASLPEEMELQRYTDSNEGFTLLRPSSWIKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQFVADKLIQAEKRKESTIDTELIGASERSGHGGLKVYEFEYKVDSSRGGLKRIFSAAFVASKKLYLLNITHSDKPESPLDTHTRMMLEEVLHSFDAAPTT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	239	2.2.26 [Sep-21-2011]
Q8VY52	232	PsbP domain-containing pr	yes	no	0.794	0.818	0.649	6e-67

>sp|Q8VY52|PPD2_ARATH PsbP domain-containing protein 2, chloroplastic OS=Arabidopsis thaliana GN=PPD2 PE=1 SV=1

 Score =  253 bits (647), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 126/194 (64%), Positives = 150/194 (77%), Gaps = 4/194 (2%)

Query: 46  SLRLSKRELCLSSFVLILNGLYPKLSKASLPEEMELQRYTDSNEGFTLLRPSSWIKVDKA 105
           S+ LSKR L LS   L  NG        S+ E   LQRYTDSN GFTLL PSS+ KV+KA
Sbjct: 43  SINLSKRHLNLSILTLFFNGFLLDNKAKSMEE---LQRYTDSNNGFTLLIPSSYTKVEKA 99

Query: 106 GATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQFVADKLIQAEKRKESTIDTELIGAS 165
           GA  LFEE N G+NN+GVVV+PVR+ SL +FG+PQFVADKLI AEKRKEST + E++   
Sbjct: 100 GANALFEELNNGSNNIGVVVSPVRIKSLDQFGSPQFVADKLINAEKRKESTKEAEVVSVG 159

Query: 166 ERSGHGGLKVYEFEYKVDSSRGGLKRIFSAAFVASKKLYLLNITHSDKPESPLDTHTRMM 225
           ER+G G  +VYEFEYK+DS+RGG+KR+FSAAFV+S KLYLLN+ HSDKPE+PLD+ TRM 
Sbjct: 160 ERAGLGQ-QVYEFEYKIDSTRGGIKRVFSAAFVSSNKLYLLNVVHSDKPENPLDSSTRMS 218

Query: 226 LEEVLHSFDAAPTT 239
           LE+VLHSFDA P T
Sbjct: 219 LEQVLHSFDALPLT 232

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	239
255587317	244	conserved hypothetical protein [Ricinus	0.958	0.938	0.676	2e-81
224093568	204	predicted protein [Populus trichocarpa]	0.790	0.926	0.747	2e-78
449459216	357	PREDICTED: psbP domain-containing protei	0.861	0.577	0.694	6e-72
357464759	237	PsbP domain-containing protein [Medicago	0.958	0.966	0.589	6e-70
356516389	251	PREDICTED: psbP domain-containing protei	0.644	0.613	0.805	1e-69
225438398	234	PREDICTED: psbP domain-containing protei	0.907	0.927	0.675	2e-69
297822573	240	hypothetical protein ARALYDRAFT_481771 [	0.799	0.795	0.671	2e-67
356508949	241	PREDICTED: psbP domain-containing protei	0.786	0.780	0.703	3e-67
30683953	232	PsbP domain-containing protein 2 [Arabid	0.794	0.818	0.649	3e-65
20198164	161	hypothetical protein [Arabidopsis thalia	0.665	0.987	0.712	2e-62

>gi|255587317|ref|XP_002534226.1| conserved hypothetical protein [Ricinus communis] gi|223525676|gb|EEF28158.1| conserved hypothetical protein [Ricinus communis]

 Score =  307 bits (787), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 165/244 (67%), Positives = 189/244 (77%), Gaps = 15/244 (6%)

Query: 1   MALQICLALSISSHNSLNHSP--MSSSPSTLI------SFSVQTKKKTVVELSSLRLSKR 52
           MALQ C ALS       N+ P  +SS P TL+        S   +K+ V+   S   SKR
Sbjct: 1   MALQACFALSCQGPYVQNNGPKSVSSLPRTLLHSISLPRASCPNRKEAVI--LSFCWSKR 58

Query: 53  ELCLSSFVLILNG-LYPKLSKASLPEEM-ELQRYTDSNEGFTLLRPSSWIKVDKAGATVL 110
           +L L+   L +NG L   +    L  EM EL+RYTD+ EGFTLLRPS+++KVDKAGATVL
Sbjct: 59  KLILA---LSINGSLLNIIPDTILAIEMGELERYTDAKEGFTLLRPSTYVKVDKAGATVL 115

Query: 111 FEEANKGTNNLGVVVNPVRVASLGEFGTPQFVADKLIQAEKRKESTIDTELIGASERSGH 170
           FEE NKG+NN+GVVVNPVR+A+LGEFGTPQFVADKLIQAEKRKEST D ELIG +ER GH
Sbjct: 116 FEEVNKGSNNIGVVVNPVRLATLGEFGTPQFVADKLIQAEKRKESTKDVELIGVAERPGH 175

Query: 171 GGLKVYEFEYKVDSSRGGLKRIFSAAFVASKKLYLLNITHSDKPESPLDTHTRMMLEEVL 230
           GGL+VYEFEY+VDS+RGG+KRIFSAAFVASKKLYLLNITHSDKPESPLD HTRMMLEEVL
Sbjct: 176 GGLQVYEFEYRVDSTRGGVKRIFSAAFVASKKLYLLNITHSDKPESPLDPHTRMMLEEVL 235

Query: 231 HSFD 234
           HSFD
Sbjct: 236 HSFD 239

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224093568|ref|XP_002309937.1| predicted protein [Populus trichocarpa] gi|222852840|gb|EEE90387.1| predicted protein [Populus trichocarpa]

 Score =  298 bits (762), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 142/190 (74%), Positives = 164/190 (86%), Gaps = 1/190 (0%)

Query: 51  KRELCLSSFVLILNGLYPKLSKAS-LPEEMELQRYTDSNEGFTLLRPSSWIKVDKAGATV 109
           +R+L LS   L++NG  P LS  S L +E+EL RYTDS EGFTLL PSS++KVDKAGATV
Sbjct: 15  RRKLNLSVLALLINGSLPNLSNNSILAQELELARYTDSKEGFTLLTPSSYVKVDKAGATV 74

Query: 110 LFEEANKGTNNLGVVVNPVRVASLGEFGTPQFVADKLIQAEKRKESTIDTELIGASERSG 169
           LFEE NKG+NN+GVVV PVR+ASL EFG+PQFVADKLIQAEK+KEST D E+I  +ERSG
Sbjct: 75  LFEEVNKGSNNIGVVVTPVRLASLDEFGSPQFVADKLIQAEKKKESTKDAEVISVAERSG 134

Query: 170 HGGLKVYEFEYKVDSSRGGLKRIFSAAFVASKKLYLLNITHSDKPESPLDTHTRMMLEEV 229
           HGGL+VYEFEYKVDS+RGG+KRIFSAAFV+SKKLY+LNI HSDKPESPLDT TR +LEEV
Sbjct: 135 HGGLQVYEFEYKVDSTRGGMKRIFSAAFVSSKKLYILNIAHSDKPESPLDTDTRTILEEV 194

Query: 230 LHSFDAAPTT 239
           +HSFDAA  T
Sbjct: 195 IHSFDAATMT 204

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459216|ref|XP_004147342.1| PREDICTED: psbP domain-containing protein 2, chloroplastic-like [Cucumis sativus] gi|449523543|ref|XP_004168783.1| PREDICTED: psbP domain-containing protein 2, chloroplastic-like [Cucumis sativus]

 Score =  276 bits (705), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 143/206 (69%), Positives = 168/206 (81%)

Query: 34  VQTKKKTVVELSSLRLSKRELCLSSFVLILNGLYPKLSKASLPEEMELQRYTDSNEGFTL 93
             T K+ +    +L  S+R + +S   L   G    +S A   E+ EL+RYTDS EGFTL
Sbjct: 152 THTGKQPLEHKFALVTSRRAMNVSILSLFFYGFSTSISSAVFAEDFELERYTDSKEGFTL 211

Query: 94  LRPSSWIKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQFVADKLIQAEKRK 153
           LRPSSW+KVDKAGATVLFEE NKG+NN+GVVVNPVR+ SLGEFGTPQFVADKLIQAEKRK
Sbjct: 212 LRPSSWVKVDKAGATVLFEEGNKGSNNVGVVVNPVRLTSLGEFGTPQFVADKLIQAEKRK 271

Query: 154 ESTIDTELIGASERSGHGGLKVYEFEYKVDSSRGGLKRIFSAAFVASKKLYLLNITHSDK 213
           EST D  ++G +ERSG GGL+VYEFEY VDS+RGG+KRIFSAAFVASKKLY+LNI+HSDK
Sbjct: 272 ESTKDAAVVGVAERSGEGGLQVYEFEYTVDSTRGGMKRIFSAAFVASKKLYILNISHSDK 331

Query: 214 PESPLDTHTRMMLEEVLHSFDAAPTT 239
           PESPLD+  RMMLE+VLHSFDAAP++
Sbjct: 332 PESPLDSQKRMMLEQVLHSFDAAPSS 357

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357464759|ref|XP_003602661.1| PsbP domain-containing protein [Medicago truncatula] gi|358348394|ref|XP_003638232.1| PsbP domain-containing protein [Medicago truncatula] gi|355491709|gb|AES72912.1| PsbP domain-containing protein [Medicago truncatula] gi|355504167|gb|AES85370.1| PsbP domain-containing protein [Medicago truncatula]

 Score =  269 bits (688), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 142/241 (58%), Positives = 179/241 (74%), Gaps = 12/241 (4%)

Query: 1   MALQICLALSISSHNSLNHSPM--SSSPSTLISFSVQTKKKTVVELSSLRL---SKRELC 55
           MAL+   + S  SHN+L H  +  SSS  TLI    ++   + +  S  ++    KR+L 
Sbjct: 1   MALK---SFSTLSHNTLFHKLIHASSSSPTLIP---KSTSPSCIHDSHKQMPCFGKRKLN 54

Query: 56  LSSFVL-ILNGLYPKLSKASLPEEMELQRYTDSNEGFTLLRPSSWIKVDKAGATVLFEEA 114
           L+  +   L  ++P +  ++     ELQRYTDSNEGFTL  PSSW KVDKAGAT LF++ 
Sbjct: 55  LTLLLTPFLWSVFPNVLLSAQELITELQRYTDSNEGFTLQIPSSWTKVDKAGATALFQDP 114

Query: 115 NKGTNNLGVVVNPVRVASLGEFGTPQFVADKLIQAEKRKESTIDTELIGASERSGHGGLK 174
           NKG+NN+GVVVNPVR+ +LG+FGTPQFV DKL+QAE+RKEST + E++  +ERSG GGL+
Sbjct: 115 NKGSNNIGVVVNPVRLTALGDFGTPQFVVDKLLQAERRKESTKEAEVVTVAERSGKGGLQ 174

Query: 175 VYEFEYKVDSSRGGLKRIFSAAFVASKKLYLLNITHSDKPESPLDTHTRMMLEEVLHSFD 234
           VYEFEYK+DS+RGGLKRIFSAAFVASKK+Y LNI HSD PESPLD H RMMLE+VLHSFD
Sbjct: 175 VYEFEYKIDSTRGGLKRIFSAAFVASKKIYFLNIVHSDNPESPLDQHKRMMLEQVLHSFD 234

Query: 235 A 235
           +
Sbjct: 235 S 235

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516389|ref|XP_003526877.1| PREDICTED: psbP domain-containing protein 2, chloroplastic-like [Glycine max]

 Score =  268 bits (686), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 124/154 (80%), Positives = 140/154 (90%)

Query: 83  RYTDSNEGFTLLRPSSWIKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQFV 142
           RYTDS EGFTLL PSSW KVDKAGATVLF+EA+ G+NN+GVVVNPVR+ +L EFGTPQFV
Sbjct: 97  RYTDSEEGFTLLTPSSWTKVDKAGATVLFQEADMGSNNIGVVVNPVRLKTLEEFGTPQFV 156

Query: 143 ADKLIQAEKRKESTIDTELIGASERSGHGGLKVYEFEYKVDSSRGGLKRIFSAAFVASKK 202
           ADKL+QAE+RKEST + ELI  +ERSG GGL++YEFEYKVDS+RGG+KRIFSAAFVASKK
Sbjct: 157 ADKLLQAERRKESTKEAELITVAERSGEGGLQIYEFEYKVDSTRGGMKRIFSAAFVASKK 216

Query: 203 LYLLNITHSDKPESPLDTHTRMMLEEVLHSFDAA 236
           LYLLNI HSDKPESPLD H RM+LE+VLHSFDAA
Sbjct: 217 LYLLNIVHSDKPESPLDPHKRMILEQVLHSFDAA 250

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438398|ref|XP_002274735.1| PREDICTED: psbP domain-containing protein 2, chloroplastic [Vitis vinifera] gi|296082589|emb|CBI21594.3| unnamed protein product [Vitis vinifera]

 Score =  268 bits (685), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 150/222 (67%), Positives = 170/222 (76%), Gaps = 5/222 (2%)

Query: 23  SSSPSTLISFSVQT--KKKTVVELSSLR--LSKRELCLSSFVLILNGLYPKLSKASLPEE 78
           SS P TL    +    K KT  +   L   LSKR+L LS   L+L    P      + +E
Sbjct: 13  SSPPKTLFPIPIPKALKPKTQPKWKPLECCLSKRDLNLSIVSLLLAAALPNTVFKVVAQE 72

Query: 79  ME-LQRYTDSNEGFTLLRPSSWIKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEFG 137
           +E  QRYTDS EGFTLL PSSWIKVDK GATVLFEE NKG NN+GVVV+PVR+ SL +FG
Sbjct: 73  LEEFQRYTDSVEGFTLLIPSSWIKVDKGGATVLFEEENKGVNNVGVVVSPVRLESLKQFG 132

Query: 138 TPQFVADKLIQAEKRKESTIDTELIGASERSGHGGLKVYEFEYKVDSSRGGLKRIFSAAF 197
           +PQFVADK+IQAEKRKEST D ELIG +ERSG GGL+VYEFEY VDS+RGG+KRIFSAAF
Sbjct: 133 SPQFVADKVIQAEKRKESTKDAELIGVAERSGQGGLQVYEFEYIVDSTRGGMKRIFSAAF 192

Query: 198 VASKKLYLLNITHSDKPESPLDTHTRMMLEEVLHSFDAAPTT 239
           V SKKLYLLNI H DKPESPLD+HTR MLE+VLHSFDAAP+T
Sbjct: 193 VNSKKLYLLNIAHIDKPESPLDSHTRTMLEQVLHSFDAAPST 234

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297822573|ref|XP_002879169.1| hypothetical protein ARALYDRAFT_481771 [Arabidopsis lyrata subsp. lyrata] gi|297325008|gb|EFH55428.1| hypothetical protein ARALYDRAFT_481771 [Arabidopsis lyrata subsp. lyrata]

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 131/195 (67%), Positives = 154/195 (78%), Gaps = 4/195 (2%)

Query: 45  SSLRLSKRELCLSSFVLILNGLYPKLSKASLPEEMELQRYTDSNEGFTLLRPSSWIKVDK 104
           + + LSKR L LS   L  NG +  L KA   EE  LQRYTDSN GFTLL PSS+ KVDK
Sbjct: 50  TEISLSKRHLNLSILTLFFNGFF-LLDKAKSIEE--LQRYTDSNNGFTLLIPSSYTKVDK 106

Query: 105 AGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQFVADKLIQAEKRKESTIDTELIGA 164
           AGA  LFEE N G+NN+GVVV+PVR+ SL +FGTPQFVADKLI AEKRKEST + E++  
Sbjct: 107 AGANALFEEPNNGSNNIGVVVSPVRIKSLDQFGTPQFVADKLINAEKRKESTKEVEVVSV 166

Query: 165 SERSGHGGLKVYEFEYKVDSSRGGLKRIFSAAFVASKKLYLLNITHSDKPESPLDTHTRM 224
            ERSG G  +VYEFEYK+DS+RGG+KR+FSAAFV+S KLYLLN+ HSDKPE+PLD+ TRM
Sbjct: 167 GERSGLGQ-QVYEFEYKIDSTRGGIKRVFSAAFVSSNKLYLLNVVHSDKPENPLDSSTRM 225

Query: 225 MLEEVLHSFDAAPTT 239
           +LE+VLHSFDA P T
Sbjct: 226 LLEQVLHSFDALPLT 240

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508949|ref|XP_003523215.1| PREDICTED: psbP domain-containing protein 2, chloroplastic-like [Glycine max]

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 133/189 (70%), Positives = 157/189 (83%), Gaps = 1/189 (0%)

Query: 49  LSKRELCLSSFVLILNGLYPKL-SKASLPEEMELQRYTDSNEGFTLLRPSSWIKVDKAGA 107
            SKR + L++F+     L P       L +E+ELQRYTDS+EGFTLL PSSW KVDKAGA
Sbjct: 52  FSKRSILLTTFLWGQGMLLPNARDALLLAQELELQRYTDSDEGFTLLTPSSWTKVDKAGA 111

Query: 108 TVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQFVADKLIQAEKRKESTIDTELIGASER 167
           TVLF+EA+ G+NN+GVVVNPVR+ +L EFGTPQFVADKL+QAE+RKEST + ELI  +ER
Sbjct: 112 TVLFQEADMGSNNIGVVVNPVRLKTLEEFGTPQFVADKLLQAERRKESTKEVELITVAER 171

Query: 168 SGHGGLKVYEFEYKVDSSRGGLKRIFSAAFVASKKLYLLNITHSDKPESPLDTHTRMMLE 227
           SG GGL++YEFEYKVDS+RGG+KRIFSAAFVASKKLYLLNI HSDK E PLD + RM+LE
Sbjct: 172 SGEGGLQIYEFEYKVDSTRGGMKRIFSAAFVASKKLYLLNIVHSDKLEIPLDPNKRMILE 231

Query: 228 EVLHSFDAA 236
           +VLHSFDAA
Sbjct: 232 QVLHSFDAA 240

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30683953|ref|NP_850123.1| PsbP domain-containing protein 2 [Arabidopsis thaliana] gi|75161418|sp|Q8VY52.1|PPD2_ARATH RecName: Full=PsbP domain-containing protein 2, chloroplastic; AltName: Full=PsbP-related thylakoid lumenal protein 3; Flags: Precursor gi|18253015|gb|AAL62434.1| unknown protein [Arabidopsis thaliana] gi|22136412|gb|AAM91284.1| unknown protein [Arabidopsis thaliana] gi|330253054|gb|AEC08148.1| PsbP domain-containing protein 2 [Arabidopsis thaliana]

 Score =  253 bits (647), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 126/194 (64%), Positives = 150/194 (77%), Gaps = 4/194 (2%)

Query: 46  SLRLSKRELCLSSFVLILNGLYPKLSKASLPEEMELQRYTDSNEGFTLLRPSSWIKVDKA 105
           S+ LSKR L LS   L  NG        S+ E   LQRYTDSN GFTLL PSS+ KV+KA
Sbjct: 43  SINLSKRHLNLSILTLFFNGFLLDNKAKSMEE---LQRYTDSNNGFTLLIPSSYTKVEKA 99

Query: 106 GATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQFVADKLIQAEKRKESTIDTELIGAS 165
           GA  LFEE N G+NN+GVVV+PVR+ SL +FG+PQFVADKLI AEKRKEST + E++   
Sbjct: 100 GANALFEELNNGSNNIGVVVSPVRIKSLDQFGSPQFVADKLINAEKRKESTKEAEVVSVG 159

Query: 166 ERSGHGGLKVYEFEYKVDSSRGGLKRIFSAAFVASKKLYLLNITHSDKPESPLDTHTRMM 225
           ER+G G  +VYEFEYK+DS+RGG+KR+FSAAFV+S KLYLLN+ HSDKPE+PLD+ TRM 
Sbjct: 160 ERAGLGQ-QVYEFEYKIDSTRGGIKRVFSAAFVSSNKLYLLNVVHSDKPENPLDSSTRMS 218

Query: 226 LEEVLHSFDAAPTT 239
           LE+VLHSFDA P T
Sbjct: 219 LEQVLHSFDALPLT 232

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|20198164|gb|AAM15436.1| hypothetical protein [Arabidopsis thaliana]

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 114/160 (71%), Positives = 136/160 (85%), Gaps = 1/160 (0%)

Query: 80  ELQRYTDSNEGFTLLRPSSWIKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTP 139
           ELQRYTDSN GFTLL PSS+ KV+KAGA  LFEE N G+NN+GVVV+PVR+ SL +FG+P
Sbjct: 3   ELQRYTDSNNGFTLLIPSSYTKVEKAGANALFEELNNGSNNIGVVVSPVRIKSLDQFGSP 62

Query: 140 QFVADKLIQAEKRKESTIDTELIGASERSGHGGLKVYEFEYKVDSSRGGLKRIFSAAFVA 199
           QFVADKLI AEKRKEST + E++   ER+G G  +VYEFEYK+DS+RGG+KR+FSAAFV+
Sbjct: 63  QFVADKLINAEKRKESTKEAEVVSVGERAGLGQ-QVYEFEYKIDSTRGGIKRVFSAAFVS 121

Query: 200 SKKLYLLNITHSDKPESPLDTHTRMMLEEVLHSFDAAPTT 239
           S KLYLLN+ HSDKPE+PLD+ TRM LE+VLHSFDA P T
Sbjct: 122 SNKLYLLNVVHSDKPENPLDSSTRMSLEQVLHSFDALPLT 161

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	239
TAIR|locus:2828415	232	AT2G28605 [Arabidopsis thalian	0.732	0.754	0.670	3.2e-58

TAIR|locus:2828415 AT2G28605 [Arabidopsis thaliana (taxid:3702)]

 Score = 598 (215.6 bits), Expect = 3.2e-58, P = 3.2e-58
 Identities = 120/179 (67%), Positives = 143/179 (79%)

Query:    61 LILNGLYPKLSKASLPEEMELQRYTDSNEGFTLLRPSSWIKVDKAGATVLFEEANKGTNN 120
             L  NG     +KA   EE  LQRYTDSN GFTLL PSS+ KV+KAGA  LFEE N G+NN
Sbjct:    58 LFFNGFLLD-NKAKSMEE--LQRYTDSNNGFTLLIPSSYTKVEKAGANALFEELNNGSNN 114

Query:   121 LGVVVNPVRVASLGEFGTPQFVADKLIQAEKRKESTIDTELIGASERSGHGGLKVYEFEY 180
             +GVVV+PVR+ SL +FG+PQFVADKLI AEKRKEST + E++   ER+G G  +VYEFEY
Sbjct:   115 IGVVVSPVRIKSLDQFGSPQFVADKLINAEKRKESTKEAEVVSVGERAGLGQ-QVYEFEY 173

Query:   181 KVDSSRGGLKRIFSAAFVASKKLYLLNITHSDKPESPLDTHTRMMLEEVLHSFDAAPTT 239
             K+DS+RGG+KR+FSAAFV+S KLYLLN+ HSDKPE+PLD+ TRM LE+VLHSFDA P T
Sbjct:   174 KIDSTRGGIKRVFSAAFVSSNKLYLLNVVHSDKPENPLDSSTRMSLEQVLHSFDALPLT 232


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.132   0.366    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      239       198   0.00083  111 3  11 22  0.37    33
                                                     31  0.45    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  596 (63 KB)
  Total size of DFA:  149 KB (2090 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.92u 0.22s 17.14t   Elapsed:  00:00:01
  Total cpu time:  16.92u 0.22s 17.14t   Elapsed:  00:00:01
  Start:  Fri May 10 11:08:59 2013   End:  Fri May 10 11:09:00 2013

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009523 "photosystem II" evidence=IEA

GO:0009654 "oxygen evolving complex" evidence=IEA

GO:0015979 "photosynthesis" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0009579 "thylakoid" evidence=IDA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8VY52	PPD2_ARATH	No assigned EC number	0.6494	0.7949	0.8189	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	239
pfam01789	163	pfam01789, PsbP, PsbP	2e-18
PLN00059	286	PLN00059, PLN00059, PsbP domain-containing protein	0.002

>gnl|CDD|216701 pfam01789, PsbP, PsbP

 Score = 78.9 bits (195), Expect = 2e-18
 Identities = 42/136 (30%), Positives = 70/136 (51%), Gaps = 4/136 (2%)

Query: 81  LQRYTDSNEGFTLLRPSSW-IKVDKAGATVLFEEANKGTNNLGVVVNPV-RVASLGEFGT 138
            Q Y D+++G+  L P+ W  +V   G  V+F +  +   N+ VV++PV +  SL + G+
Sbjct: 10  FQAYVDTDDGYEFLYPTGWWREVVSDGPDVVFHDLIESDENVSVVISPVDKKKSLEDLGS 69

Query: 139 PQFVADKLI-QAEKRKESTIDTELIGASERSGHGGLKVYEFEYKVDSSRGGLKRIFSAAF 197
           P+ V ++L+      + S  + EL+ ASER    G   Y+ EY V  + GG +   +   
Sbjct: 70  PEEVGERLLRGVLAPEGSGREAELLEASEREV-DGKTYYDLEYLVRLADGGDRHELATVT 128

Query: 198 VASKKLYLLNITHSDK 213
           V   KLY L    ++K
Sbjct: 129 VDRGKLYTLAAQTNEK 144

This family consists of the 23 kDa subunit of oxygen evolving system of photosystem II or PsbP from various plants (where it is encoded by the nuclear genome) and Cyanobacteria. The 23 KDa PsbP protein is required for PSII to be fully operational in vivo, it increases the affinity of the water oxidation site for Cl- and provides the conditions required for high affinity binding of Ca2+. Length = 163

>gnl|CDD|177690 PLN00059, PLN00059, PsbP domain-containing protein 1; Provisional

 Score = 38.6 bits (89), Expect = 0.002
 Identities = 38/179 (21%), Positives = 73/179 (40%), Gaps = 22/179 (12%)

Query: 19  HSPMSSSPSTLISFSVQTKKKTVVELSSLRLSKRELCLSSFVLILNGLYPKLSKASLPEE 78
            S  S+ P + ++ +  T  K V  +   +     L +S  ++         S+A+LP  
Sbjct: 52  QSAKSAKPDSPVAINCLTDAKQVCAVGRRKSMMMGLLMSGLIV---------SEANLPTA 102

Query: 79  ME----LQRYTDSNEGFTLLRPSSWIKVDKAGATVLFEEANKGTNNLGVVV---NPVRVA 131
                  + Y D+ +G++   P +WI+V  AGA + F +      NL V     +  +  
Sbjct: 103 FASIPVFREYIDTFDGYSFKYPQNWIQVRGAGADIFFRDPVVLDENLSVEFSSPSSSKYT 162

Query: 132 SLGEFGTPQFVADKLIQA------EKRKESTIDTELIGASERSGHGGLKVYEFEYKVDS 184
           SL + G+P+ V  ++++         R     +  ++  S R    G   Y+ E  + S
Sbjct: 163 SLEDLGSPEEVGKRVLRQYLTEFMSTRLGVKREANILSTSSRVADDGKLYYQVEVNIKS 221

Length = 286

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	239
PLN00059	286	PsbP domain-containing protein 1; Provisional	100.0
PLN00042	260	photosystem II oxygen-evolving enhancer protein 2;	100.0
PF01789	175	PsbP: PsbP; InterPro: IPR002683 Oxygenic photosynt	100.0
PLN00067	263	PsbP domain-containing protein 6; Provisional	100.0
PLN00066	262	PsbP domain-containing protein 4; Provisional	100.0
PLN03152	241	hypothetical protein; Provisional	99.97
PF08786	130	DUF1795: Domain of unknown function (DUF1795); Int	98.08
COG5435	147	Uncharacterized conserved protein [Function unknow	95.62
PRK11615	185	hypothetical protein; Provisional	94.89
PF12712	153	DUF3805: Domain of unknown function (DUF3805); Int	94.45
PF10738	175	Lpp-LpqN: Probable lipoprotein LpqN; InterPro: IPR	87.85
PF07174	297	FAP: Fibronectin-attachment protein (FAP); InterPr	85.02

>PLN00059 PsbP domain-containing protein 1; Provisional

Probab=100.00  E-value=8e-50  Score=353.87  Aligned_cols=186  Identities=20%  Similarity=0.345  Sum_probs=162.6

Q ss_pred             cccchhhHHHHHHHHHHHhh-hCCCCCCCCCccccCceecccCCCCeEEecCCCCeeccccCceEEEeeCCCCCccEEEE
Q 026386           46 SLRLSKRELCLSSFVLILNG-LYPKLSKASLPEEMELQRYTDSNEGFTLLRPSSWIKVDKAGATVLFEEANKGTNNLGVV  124 (239)
Q Consensus        46 ~~~~~RR~lll~~~~~~~~~-~~~~~~~~~~A~~~g~~~y~D~~~gYsf~yP~~W~~v~~~G~dv~F~d~~~~~~nVsVv  124 (239)
                      .+.+.||++|+-.+.++..+ +..+.+ .++|+..||+.|+|+.|||+|+||.||++|++.|+|++|+|+++.+|||+|+
T Consensus        74 ~~~~~rr~~~~~~l~~~~~~~s~~~~~-~a~a~~~~l~~y~D~~DGY~FlYP~GWi~V~~~G~DVvFrD~Ie~~ENVSV~  152 (286)
T PLN00059         74 VCAVGRRKSMMMGLLMSGLIVSEANLP-TAFASIPVFREYIDTFDGYSFKYPQNWIQVRGAGADIFFRDPVVLDENLSVE  152 (286)
T ss_pred             hhhhhhhhhhHHHHHHHHHHHHhhcCc-hhhcCCcccceeEcCCCCeEEeCCCCCeEeccCCCceEEeccCccccceEEE
Confidence            57889999976444322232 222222 4577778999999999999999999999999999999999999999999999


Q ss_pred             EecCC---CCCcccCCCHHHHHHHHHHH-hhc-----cCCCcceeEEeceeeecCCCcEEEEEEEEEecCC---------
Q 026386          125 VNPVR---VASLGEFGTPQFVADKLIQA-EKR-----KESTIDTELIGASERSGHGGLKVYEFEYKVDSSR---------  186 (239)
Q Consensus       125 Ispv~---~~sl~dfGsp~eVa~~Ll~~-~~~-----~~sg~~a~ll~a~er~~~dG~~YY~~Ey~v~s~~---------  186 (239)
                      |+|+.   +++|+|||+|+|||++|+++ +++     .+++++++||++.+|++.||++||+|||.++++.         
T Consensus       153 ISs~sss~~~sLeDLGsP~eVgerLlkqvLa~f~str~GsgReaeLVsA~~Re~~DGktYY~lEY~Vks~~~~n~~~~~~  232 (286)
T PLN00059        153 FSSPSSSKYTSLEDLGSPEEVGKRVLRQYLTEFMSTRLGVKREANILSTSSRVADDGKLYYQVEVNIKSYANNNELAVMP  232 (286)
T ss_pred             EecCCcccCCChHHcCCHHHHHHHHHHHHhcccccccCCCCcceEEEEeeeEEccCCcEEEEEEEEEEcCcccccccccc
Confidence            99885   89999999999999999999 565     5778999999999998779999999999999962         


Q ss_pred             ------CCcceEEEEE-EEeCCEEEEEEEeecCCCCCCcchhhHHHHHHHhhccccc
Q 026386          187 ------GGLKRIFSAA-FVASKKLYLLNITHSDKPESPLDTHTRMMLEEVLHSFDAA  236 (239)
Q Consensus       187 ------~~~~Rh~laa-tv~~gkLYtL~~qa~~~pE~rW~k~~~~~l~~vv~SF~v~  236 (239)
                            -+|.||++++ +|.|||||||++|+   ||+||+|++ +.|++|++||+|.
T Consensus       233 qdr~~~~~w~RH~LA~v~V~nGkLYTL~~qt---pE~RW~kvk-~~f~~V~dSF~V~  285 (286)
T PLN00059        233 QDRVARLEWNRRYLAVLGVENDRLYSIRLQT---PEKVFLEEE-KDLRRVMDSFRVE  285 (286)
T ss_pred             cccccccccceeeEEEEEEeCCEEEEEEcCC---cHHHHHHHH-HHHHHHHhheeec
Confidence                  0379999999 99999999999999   999999999 8999999999985

>PLN00042 photosystem II oxygen-evolving enhancer protein 2; Provisional

Probab=100.00  E-value=3.1e-44  Score=318.63  Aligned_cols=185  Identities=23%  Similarity=0.298  Sum_probs=150.0

Q ss_pred             cccchhhHHHHHHHHHHHhhhCCCCCCCCCccc----------cCceecccCCCCeEEecCCCCeecc---ccCceEEEe
Q 026386           46 SLRLSKRELCLSSFVLILNGLYPKLSKASLPEE----------MELQRYTDSNEGFTLLRPSSWIKVD---KAGATVLFE  112 (239)
Q Consensus        46 ~~~~~RR~lll~~~~~~~~~~~~~~~~~~~A~~----------~g~~~y~D~~~gYsf~yP~~W~~v~---~~G~dv~F~  112 (239)
                      ...++||.+|+.++..++.++...-.+++.+++          .||.+|.  .|||+|+||.+|++++   .+|+|++|+
T Consensus        47 ~~~~srr~~l~~~~ga~a~~~~~~pa~aay~~~anvfg~~k~~~gF~~y~--~dgY~FlyP~~W~~~ke~~~~G~dv~f~  124 (260)
T PLN00042         47 NSAVSRRAALALLAGAAAAGAKVSPANAAYGESANVFGKPKTNTGFLPYN--GDGFKLLVPSKWNPSKEREFPGQVLRFE  124 (260)
T ss_pred             cccccHHHHHHHHHHHHHhhcccCchhhhhcchhhccCCCCCCCCCeEee--CCCeEEecCCCCccccccccCCceEEee
Confidence            466788888765543333223222122333332          6999997  4999999999999665   569999999


Q ss_pred             eCCCCCccEEEEEecCCCCCcccCCCHHH----HHHHHHHH-hhcc---CCCc------ceeEEeceeeecCCCcEEEEE
Q 026386          113 EANKGTNNLGVVVNPVRVASLGEFGTPQF----VADKLIQA-EKRK---ESTI------DTELIGASERSGHGGLKVYEF  178 (239)
Q Consensus       113 d~~~~~~nVsVvIspv~~~sl~dfGsp~e----Va~~Ll~~-~~~~---~sg~------~a~ll~a~er~~~dG~~YY~~  178 (239)
                      |+++.++||+|+|+|+++++|+|||+|+|    |++.|.++ ++.+   ++|+      .++||++++|+. ||++||+|
T Consensus       125 D~~~~~eNVSV~Ispt~k~sI~dlGsPee~l~~vgylL~kq~~a~~t~s~~Gf~p~~vata~Lleas~re~-dGk~YY~l  203 (260)
T PLN00042        125 DNFDATSNLSVMVTPTDKKSITDYGSPEEFLSKVSYLLGKQAYSGETASEGGFDANAVATAAVLESSTQEV-GGKPYYYL  203 (260)
T ss_pred             ccccccccEEEEEecCCcCCHhhcCCHHHHHHHHHHHHHhhhccCccccccCcCcccccceeEEEeeeEEe-CCeEEEEE
Confidence            99999999999999999999999999999    67777776 4544   5565      579999999987 99999999


Q ss_pred             EEEEecCCC-CcceEEEEE-EEeCCEEEEEEEeecCCCCCCcchhhHHHHHHHhhccccc
Q 026386          179 EYKVDSSRG-GLKRIFSAA-FVASKKLYLLNITHSDKPESPLDTHTRMMLEEVLHSFDAA  236 (239)
Q Consensus       179 Ey~v~s~~~-~~~Rh~laa-tv~~gkLYtL~~qa~~~pE~rW~k~~~~~l~~vv~SF~v~  236 (239)
                      ||.++.+++ ++.||.+++ +|.|||||||++|+   ||+||.|+.++.|++|++||+|.
T Consensus       204 E~~~~~ad~d~~~RH~LatatV~~GkLYtl~aqa---~EkRW~K~~~k~l~~v~~SFsVa  260 (260)
T PLN00042        204 SVLTRTADGDEGGKHQLITATVSDGKLYICKAQA---GDKRWFKGARKFVEGAASSFSVA  260 (260)
T ss_pred             EEEEecCCCCCCCceEEEEEEEECCEEEEEEecC---chhhhhHHHHHHHHHHHhceecC
Confidence            999999863 457888877 99999999999999   99999998537899999999984

>PF01789 PsbP: PsbP; InterPro: IPR002683 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae

Probab=100.00  E-value=1e-41  Score=288.34  Aligned_cols=153  Identities=38%  Similarity=0.578  Sum_probs=139.1

Q ss_pred             ccCceecccCCCCeEEecCCCCeeccccCceEEEeeCCCCCccEEEEEecCCCC-CcccCCCHHHHHHHHHHH-hhccCC
Q 026386           78 EMELQRYTDSNEGFTLLRPSSWIKVDKAGATVLFEEANKGTNNLGVVVNPVRVA-SLGEFGTPQFVADKLIQA-EKRKES  155 (239)
Q Consensus        78 ~~g~~~y~D~~~gYsf~yP~~W~~v~~~G~dv~F~d~~~~~~nVsVvIspv~~~-sl~dfGsp~eVa~~Ll~~-~~~~~s  155 (239)
                      ..||++|.|+.+||+|.||.+|+++++.|++++|+|+.+..+||+|+|+|++.. +|+|||+|++||++|+++ ..++++
T Consensus        20 ~~~~~~y~d~~~~y~f~~P~gW~~~~~~G~~v~f~d~~~~~~nvsV~v~p~~~~~sl~~lGs~~~va~~l~~~~~~~~~~   99 (175)
T PF01789_consen   20 STGFQPYTDSDDGYSFLYPSGWEEVDVSGADVVFRDPIDADENVSVVVSPVPKDFSLEDLGSPEEVAERLLNGELASPGS   99 (175)
T ss_dssp             -SSEEEEEECTTTEEEEEETTEEEEESTTEEEEEEETTETTSEEEEEEEE-STS-SGGGG-SHHHHHHHHHHHCCCHCTS
T ss_pred             CCCceEEEcCCCCEEEECCCCCeecCCCCeEEEEECcccccceEEEEEEecCCcCchhhcCCHHHHHHHHhhhhcccccC
Confidence            379999999999999999999999999999999999999999999999999855 999999999999999999 566777


Q ss_pred             CcceeEEeceeeecCCCcEEEEEEEEEecCCCCcceEEEEE-EEeCCEEEEEEEeecCCCCCCcchhhHHHHHHHhhccc
Q 026386          156 TIDTELIGASERSGHGGLKVYEFEYKVDSSRGGLKRIFSAA-FVASKKLYLLNITHSDKPESPLDTHTRMMLEEVLHSFD  234 (239)
Q Consensus       156 g~~a~ll~a~er~~~dG~~YY~~Ey~v~s~~~~~~Rh~laa-tv~~gkLYtL~~qa~~~pE~rW~k~~~~~l~~vv~SF~  234 (239)
                      ++.++||++.+|+. +|++||+|||.++.+++ ..||.+++ ++.+||||+|++|+   ||+||++++ +.|++|++||+
T Consensus       100 ~~~a~li~a~~~~~-~g~~yY~~Ey~~~~~~~-~~rh~l~~~tv~~g~lY~l~~~a---~e~~w~k~~-~~l~~iv~SF~  173 (175)
T PF01789_consen  100 GREAELISASEREV-DGKTYYEYEYTVQSPNE-GRRHNLAVVTVKNGKLYTLTAQA---PESRWDKVE-PKLRKIVDSFR  173 (175)
T ss_dssp             SEEEEEEEEEEEEE-TTEEEEEEEEEEEETTE-EEEEEEEEEEEETTEEEEEEEEE---EHHHHHTCH-HHHHHHHHC-E
T ss_pred             CcceEEEEeeeeec-CCccEEEEEEEeccCCC-cccEEEEEEEEECCEEEEEEEEc---CHHHHHHHH-HHHHHHHhcEE
Confidence            78999999999998 79999999999999873 57888877 99999999999999   999999999 89999999999


Q ss_pred             cc
Q 026386          235 AA  236 (239)
Q Consensus       235 v~  236 (239)
                      |.
T Consensus       174 v~  175 (175)
T PF01789_consen  174 VY  175 (175)
T ss_dssp             E-
T ss_pred             eC
Confidence            73

Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. In PSII, the oxygen-evolving complex (OEC) is responsible for catalysing the splitting of water to O(2) and 4H+. The OEC is composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ), PsbU and PsbV having been lost during the evolution of green plants []. This family represents the PSII OEC protein PsbP. Both PsbP and PsbQ (IPR008797 from INTERPRO) are regulators that are necessary for the biogenesis of optically active PSII. PsbP increases the affinity of the water oxidation site for chloride ions and provides the conditions required for high affinity binding of calcium ions [, ]. The crystal structure of PsbP from Nicotiana tabacum (Common tobacco) revealed a two-domain structure, where domain 1 may play a role in the ion retention activity in PSII, the N-terminal residues being essential for calcium and chloride ion retention activity []. PsbP is encoded in the nuclear genome in plants.; GO: 0005509 calcium ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0019898 extrinsic to membrane; PDB: 2VU4_A 1V2B_A 2LNJ_A 2XB3_A.

>PLN00067 PsbP domain-containing protein 6; Provisional

Probab=100.00  E-value=3.9e-38  Score=279.21  Aligned_cols=180  Identities=20%  Similarity=0.305  Sum_probs=144.4

Q ss_pred             cccchhhHHHHHHHHHHHhhhCCCCCCCC--------Ccc---ccCceecc-----------cCCCCeEEecCCCCeecc
Q 026386           46 SLRLSKRELCLSSFVLILNGLYPKLSKAS--------LPE---EMELQRYT-----------DSNEGFTLLRPSSWIKVD  103 (239)
Q Consensus        46 ~~~~~RR~lll~~~~~~~~~~~~~~~~~~--------~A~---~~g~~~y~-----------D~~~gYsf~yP~~W~~v~  103 (239)
                      .....||++|+++.++.+.+.....+..+        ++.   ..||-.|.           +...||+|+||.+|++++
T Consensus        40 ~~~~~rr~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~lp~~~~~~~~~~f~~~~~~tpalra~~i~gY~FlyP~gW~~v~  119 (263)
T PLN00067         40 AVVIHRRELLLGLALAPLILIAPEPPAEAREVEVGSYLPPSPSDPSFVLFKASPKDTPALRAGNVQPYQFILPPTWKQTR  119 (263)
T ss_pred             cchhHHHHHHhhhhhhhhhhccCCchhhhheehhhcccCCCCCCCceEEEecCCCCCcccccCCcccceEeCCCCCcCcc
Confidence            34567999999887643322221111000        111   14777774           345699999999999988


Q ss_pred             cc----C-----------ceEEEeeCCCCCccEEEEEecC------CCCCcccCCCHHHHHHHHHHHhhccCCCcceeEE
Q 026386          104 KA----G-----------ATVLFEEANKGTNNLGVVVNPV------RVASLGEFGTPQFVADKLIQAEKRKESTIDTELI  162 (239)
Q Consensus       104 ~~----G-----------~dv~F~d~~~~~~nVsVvIspv------~~~sl~dfGsp~eVa~~Ll~~~~~~~sg~~a~ll  162 (239)
                      ++    |           +|++|+|.  .++||+|+|+|+      ..++|+|||+|++|+++|...+.. ++++..+||
T Consensus       120 Vs~~~sGnycqp~c~~p~~dv~F~D~--~dgnVSVIVSPV~r~t~k~~~sIeDlGsPeeVl~~Lg~~v~g-~~~~~~eLL  196 (263)
T PLN00067        120 VANILSGNYCQPKCAEPWVEVKFEDE--KQGKVQVVASPLIRLTNKPNATIEEIGSPEKLIASLGPFVTG-NSYDPDELL  196 (263)
T ss_pred             ccccccCccccccccCCCceEEEeCC--CCCCEEEEEecccccccCCCCChHHccCHHHHHHHhhHHhhc-CCCCCcceE
Confidence            75    4           89999994  478999999997      368999999999999999887433 456788999


Q ss_pred             eceeeecCCCcEEEEEEEEEecCCCCcceEEEEE-EEeCCEEEEEEEeecCCCCCCcchhhHHHHHHHhhcccc
Q 026386          163 GASERSGHGGLKVYEFEYKVDSSRGGLKRIFSAA-FVASKKLYLLNITHSDKPESPLDTHTRMMLEEVLHSFDA  235 (239)
Q Consensus       163 ~a~er~~~dG~~YY~~Ey~v~s~~~~~~Rh~laa-tv~~gkLYtL~~qa~~~pE~rW~k~~~~~l~~vv~SF~v  235 (239)
                      ++.+|+. ||++||+|||.++.++  +.||.+++ +|++||||||++|+   +|+||.|++ +.|++|++||+|
T Consensus       197 eAs~re~-dGktYY~~E~~tp~a~--~gRHnLataTV~~GkLYtf~asa---nEkRW~K~k-~~l~~V~dSFsV  263 (263)
T PLN00067        197 ETSVEKI-GDQTYYKYVLETPFAL--TGSHNLAKATAKGNTVVLFVVSA---SDKQWQSSE-KTLKAILDSFQA  263 (263)
T ss_pred             EeeeEee-CCeEEEEEEEEecCCC--CCceEEEEEEEECCEEEEEEecC---CHHHHHHHH-HHHHHHHHhccC
Confidence            9999997 9999999999999987  57888877 99999999999999   999999999 899999999986

>PLN00066 PsbP domain-containing protein 4; Provisional

Probab=100.00  E-value=1.7e-34  Score=257.74  Aligned_cols=175  Identities=21%  Similarity=0.297  Sum_probs=139.5

Q ss_pred             cccchhhHHHHHHHHHHHh--hhCCCCCCC-------------CCccccCceecccCC-------------CCeEEecCC
Q 026386           46 SLRLSKRELCLSSFVLILN--GLYPKLSKA-------------SLPEEMELQRYTDSN-------------EGFTLLRPS   97 (239)
Q Consensus        46 ~~~~~RR~lll~~~~~~~~--~~~~~~~~~-------------~~A~~~g~~~y~D~~-------------~gYsf~yP~   97 (239)
                      ...++||.+|+++++++..  +++|....+             +-+.+.||++|..+.             ..|+|+||.
T Consensus        42 ~~~~~rr~~~~s~~~~~~~~~~~~~~~~~a~~~g~~ag~~~~~s~~~~~g~~~~~rp~~~~Gg~G~~~~~i~~Y~F~yP~  121 (262)
T PLN00066         42 ATAVSRRSALASGAAAASSAVLAFPGEGLAVKQGLLAGRVPGLSEPDENGWRTYRRPEGKSGGHGVGWSEITPYSFKVPQ  121 (262)
T ss_pred             cchhhHHHHHHHHHHHHhhhhhcCCcchhhhhhcccccCCCCCCCccccceEEEecCccccCcCCCCccccCCeEEECCC
Confidence            4557999999977665222  233321110             113346899997654             589999999


Q ss_pred             CCeecccc-----CceEEEeeCCCCCccEEEEEecC--------CCCCcccCCCHHHHHHHHHHH-hhccCCCcceeEEe
Q 026386           98 SWIKVDKA-----GATVLFEEANKGTNNLGVVVNPV--------RVASLGEFGTPQFVADKLIQA-EKRKESTIDTELIG  163 (239)
Q Consensus        98 ~W~~v~~~-----G~dv~F~d~~~~~~nVsVvIspv--------~~~sl~dfGsp~eVa~~Ll~~-~~~~~sg~~a~ll~  163 (239)
                      +|+++.++     |+++.|++.++.++||+|+|+|+        .+++|+|||+|++|++.|... +...  .+.++|++
T Consensus       122 GW~ev~VS~~d~gg~~vd~Rf~~~~~~nvsVvVspv~rla~~~~~~~sI~dLGspeeVi~~l~~~v~g~~--~~e~eLl~  199 (262)
T PLN00066        122 GWEEVPVSIADLGGTEIDLRFASDKEGRLKVVVAPVLRFADNLGDNATIEEIGPPEKVISGFGPELIGEP--VEEGKVLS  199 (262)
T ss_pred             CCeEeecccccCCCCceEEEeccCCCccEEEEEeccccccccccCCCChHHcCCHHHHHHHHHHHhcCCC--ccccceeE
Confidence            99998875     76677776668899999999998        478999999999999999987 3433  36789999


Q ss_pred             ceeeecCCCcEEEEEEEEEecCCCCcceEEEEE-EEeCCEEEEEEEeecCCCCCCcchhhHHHHHHHhhccccc
Q 026386          164 ASERSGHGGLKVYEFEYKVDSSRGGLKRIFSAA-FVASKKLYLLNITHSDKPESPLDTHTRMMLEEVLHSFDAA  236 (239)
Q Consensus       164 a~er~~~dG~~YY~~Ey~v~s~~~~~~Rh~laa-tv~~gkLYtL~~qa~~~pE~rW~k~~~~~l~~vv~SF~v~  236 (239)
                      +.+++. ||++||+|||     .    ||.+++ ||.+||||||++|+   ||+||.|++ +.|++|++||+|.
T Consensus       200 a~~re~-dGktYY~~E~-----~----rH~LasaTV~~GrLYt~~asa---pe~rW~k~~-~~lr~v~dSF~V~  259 (262)
T PLN00066        200 MEVAEH-SGRTYYQFEL-----P----PHTLVTATAAGNRVYIFSVTA---NGLQWKRHY-KDLKRIAKSFRVV  259 (262)
T ss_pred             eeeeec-CCcEEEEEEE-----e----CceEEEEEEECCEEEEEEeec---chHhhHHHH-HHHHHHhhceeee
Confidence            999887 9999999999     1    455554 99999999999999   999999999 8999999999984

>PLN03152 hypothetical protein; Provisional

Probab=99.97  E-value=2.9e-30  Score=224.10  Aligned_cols=173  Identities=21%  Similarity=0.315  Sum_probs=124.5

Q ss_pred             ccccchhhHHHHHHHHHHH-hhh-CCCCCCC-------------CCccccCceecccCCCCeEEecCCCCeecccc----
Q 026386           45 SSLRLSKRELCLSSFVLIL-NGL-YPKLSKA-------------SLPEEMELQRYTDSNEGFTLLRPSSWIKVDKA----  105 (239)
Q Consensus        45 ~~~~~~RR~lll~~~~~~~-~~~-~~~~~~~-------------~~A~~~g~~~y~D~~~gYsf~yP~~W~~v~~~----  105 (239)
                      +.++.+||+.++-...+.+ +++ ...++.+             .+|++..|-.|.  ++||++.||.++....++    
T Consensus        27 ~~~~~~~r~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nt~~w~~~~--g~gf~~~~pp~f~di~e~~~~~  104 (241)
T PLN03152         27 SRCGASRRDFILHTASLCASSLAAQNPLPPSLADPSKPSKPLLSGIANTKSWFQFY--GDGFSIRVPPSFEDIMEPEDYN  104 (241)
T ss_pred             ccccccccceeeehhHHHHhhhhcCCCCCccccCCCCCCCchheeeecchhhhhhh--CCceEEeCCCChhhhcChhhcc
Confidence            3578889999875433221 111 1111100             123444454444  799999999999886532    


Q ss_pred             ------C-------ceEEEeeCCCCCccEEEEEecCC--------CCCcccCCCHHHHHHHHHHHhhccCCCc-ceeEEe
Q 026386          106 ------G-------ATVLFEEANKGTNNLGVVVNPVR--------VASLGEFGTPQFVADKLIQAEKRKESTI-DTELIG  163 (239)
Q Consensus       106 ------G-------~dv~F~d~~~~~~nVsVvIspv~--------~~sl~dfGsp~eVa~~Ll~~~~~~~sg~-~a~ll~  163 (239)
                            |       ..++|..| +++|||||+|+|++        .++|.|||+|+|||+.|+    +.+..+ .++.++
T Consensus       105 ~g~~~yg~~akp~~~~aRf~s~-D~sEnVSVVIspv~~LK~tfle~kDLtDLGsp~EVgkv~v----P~g~~~~saR~ie  179 (241)
T PLN03152        105 AGLSLYGDKAKPRTFAARFASP-DGSEVLSVVIRPSNQLKITFLEAKDITDLGSLKEAAKIFV----PGGATLYSARTIK  179 (241)
T ss_pred             cccceecCCCCCcceeeeecCC-CCCceEEEEEecCccccccccccCChhHcCCHHHHHHhhC----CCcccccccceee
Confidence                  2       23568776 78999999999973        799999999999997776    333111 344444


Q ss_pred             ceeeecCCCcEEEEEEEEEecCCCCcceEEEEE-EEeCCEEEEEEEeecCCCCCCcchhhHHHHHHHhhccccc
Q 026386          164 ASERSGHGGLKVYEFEYKVDSSRGGLKRIFSAA-FVASKKLYLLNITHSDKPESPLDTHTRMMLEEVLHSFDAA  236 (239)
Q Consensus       164 a~er~~~dG~~YY~~Ey~v~s~~~~~~Rh~laa-tv~~gkLYtL~~qa~~~pE~rW~k~~~~~l~~vv~SF~v~  236 (239)
                      .+ ++. ||++||+|||.++      .||.+++ +|.+||||||++++   +|+||+|++ .+|+++++||.|+
T Consensus       180 l~-~E~-dGKtYY~lEy~v~------~RH~LaTVaVsrGKLYTl~aSt---~EkRW~Kvk-~kfr~aa~SFsV~  241 (241)
T PLN03152        180 VK-EEE-GIRTYYFYEFGRD------EQHVALVATVNSGKAYIAGATA---PESKWDDDG-VKLRSAAISLTVL  241 (241)
T ss_pred             ee-eec-CCceeEEEEEEeC------CcEEEEEEEEcCCeEEEEecCC---chhchHHHH-HHHHHHHhheeeC
Confidence            43 454 9999999999975      3565555 99999999999999   999999999 7999999999984

>PF08786 DUF1795: Domain of unknown function (DUF1795); InterPro: IPR014894 This is a bacterial protein of unknown function

Probab=98.08  E-value=0.00028  Score=56.47  Aligned_cols=125  Identities=18%  Similarity=0.242  Sum_probs=80.6

Q ss_pred             EEecCCCCeeccccCceEEEeeCCCC--CccEEEEEecCCCCCcccCCCHHHHHHHHHHHhhccCCCcceeEEeceeeec
Q 026386           92 TLLRPSSWIKVDKAGATVLFEEANKG--TNNLGVVVNPVRVASLGEFGTPQFVADKLIQAEKRKESTIDTELIGASERSG  169 (239)
Q Consensus        92 sf~yP~~W~~v~~~G~dv~F~d~~~~--~~nVsVvIspv~~~sl~dfGsp~eVa~~Ll~~~~~~~sg~~a~ll~a~er~~  169 (239)
                      +|..|.+|+.....    .|..+...  ..|+.|+-.+++     +=.++++..++.++.+.+.-  ...++++...-+.
T Consensus         3 ~~~lP~~~~D~t~n----v~~~~~~~~~~~slvIsR~~l~-----~g~tl~~~~~~q~~~l~~~l--~~~~~~~~~~~~l   71 (130)
T PF08786_consen    3 SLTLPDGWQDRTMN----VLVLPDSGGSGPSLVISRDPLP-----DGETLEDYLQRQLAQLRKQL--PGFQLVERQPITL   71 (130)
T ss_dssp             EEEEETTSEE--BE----EEEE--BTTB-EEEEEEEE--------TTS-HHHHHHHHHHHHHCCS--TT-EEEEEEEEEE
T ss_pred             eEeCCCcceeceEE----EEEccCCCCCcceEEEEeccCC-----CCCCHHHHHHHHHHHHHhhC--CCcEEEeeEEEEe
Confidence            57789999986533    45444333  334444444443     11356777778777765442  3456666665565


Q ss_pred             CCCcEEEEEEEEEecCCCCcceEEEEEEEeC-CEEEEEEEeecCCCCCCcchhhHHHHHHHhhcc
Q 026386          170 HGGLKVYEFEYKVDSSRGGLKRIFSAAFVAS-KKLYLLNITHSDKPESPLDTHTRMMLEEVLHSF  233 (239)
Q Consensus       170 ~dG~~YY~~Ey~v~s~~~~~~Rh~laatv~~-gkLYtL~~qa~~~pE~rW~k~~~~~l~~vv~SF  233 (239)
                       +|.+-+.+||.-...+. .-+...++...+ +++|+++.++   +....+..+ +.++.+++||
T Consensus        72 -~~~~a~~l~~~~~~~g~-~v~Q~q~~~~~~~~~~l~~T~t~---~~~~~~~~~-~~~~~i~~Sf  130 (130)
T PF08786_consen   72 -GGRPARELEYSFRSGGQ-PVYQRQAAVLLPGRRVLVFTYTA---PGPFTEEQR-AHWEAILKSF  130 (130)
T ss_dssp             -TTEEEEEEEEEEEETTC-EEEEEEEEEEEC-CCEEEEEEEE---ECCCHHHHH-HHHHHHHCT-
T ss_pred             -CCCCeEEEEEEEeeCCE-EEEEEEEEEEECCCEEEEEEEEc---CCCCCHHHH-HHHHHHHhcC
Confidence             88899999999885542 334444455555 9999999999   999999999 8999999998

It forms an antiparallel beta sheet structure and contains some alpha helical regions. ; PDB: 1TU1_A 3LYD_A.

>COG5435 Uncharacterized conserved protein [Function unknown]

Probab=95.62  E-value=0.75  Score=38.53  Aligned_cols=132  Identities=22%  Similarity=0.334  Sum_probs=81.9

Q ss_pred             EEecCCCCeeccccCceEEEeeCCCCCccEEEEEecCCCCCcccCC-CHHHHHHHHHHHhhccCCCcceeEEeceeeecC
Q 026386           92 TLLRPSSWIKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEFG-TPQFVADKLIQAEKRKESTIDTELIGASERSGH  170 (239)
Q Consensus        92 sf~yP~~W~~v~~~G~dv~F~d~~~~~~nVsVvIspv~~~sl~dfG-sp~eVa~~Ll~~~~~~~sg~~a~ll~a~er~~~  170 (239)
                      .|..|..|+.-...    .|.-...+..-++.+|+--.   + +-| +..+..++.+..+.+.=.+  -++..-.+-+. 
T Consensus        10 ~l~lP~~w~DrSvN----vf~~~~~gt~~~sfvIsRd~---~-~~g~~~~~y~~rql~~l~k~Lpg--y~~~~~~e~~v-   78 (147)
T COG5435          10 TLELPAAWQDRSVN----VFVSGDNGTSGFSFVISRDP---L-EPGDTFPEYVQRQLALLRKQLPG--YELHHRREIEV-   78 (147)
T ss_pred             eEcCcchhccceEE----EEEecCCCcceeEEEEecCC---C-CCCCcHHHHHHHHHHHHHhhCCC--eEEeecccccc-
Confidence            68899999986543    34333333455566664221   1 112 2345566666655443222  34444444555 


Q ss_pred             CCcEEEEEEEEEecCCCCcceE-EEEEE-EeCCEEEEEEEeecCCCCCCcchhhHHHHHHHhhcccccCC
Q 026386          171 GGLKVYEFEYKVDSSRGGLKRI-FSAAF-VASKKLYLLNITHSDKPESPLDTHTRMMLEEVLHSFDAAPT  238 (239)
Q Consensus       171 dG~~YY~~Ey~v~s~~~~~~Rh-~laat-v~~gkLYtL~~qa~~~pE~rW~k~~~~~l~~vv~SF~v~p~  238 (239)
                      +|..-...+|.-.++.++.+|. .+.++ -+++++-++++++   +-.--++.+ +...+++.||...|+
T Consensus        79 ~~~aa~~~~y~w~~~~~~~r~v~q~~~~i~~g~~vLifT~Tt---~~~ftp~q~-~~~~~~I~Sf~p~~~  144 (147)
T COG5435          79 GGAAAPLLDYQWTSPEGEQRRVQQRQVFIERGDTVLIFTLTT---PGEFTPSQK-KAWEQVIQSFVPNPP  144 (147)
T ss_pred             CccccceeEEEeecCCCCCceEEEEEeecccCCeEEEEEecC---CCCCCHHHH-HHHHHHHHhcCCCCC
Confidence            7888888888777752223443 33444 4567999999999   777777777 899999999998775

>PRK11615 hypothetical protein; Provisional

Probab=94.89  E-value=2  Score=37.22  Aligned_cols=132  Identities=11%  Similarity=0.177  Sum_probs=83.3

Q ss_pred             CCCeEEecCCCCeecccc-C----ceEEEeeCCCCCccEEEEEecCCCCCcccCCCHHHHHHHHHHHhhccCCCcceeEE
Q 026386           88 NEGFTLLRPSSWIKVDKA-G----ATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQFVADKLIQAEKRKESTIDTELI  162 (239)
Q Consensus        88 ~~gYsf~yP~~W~~v~~~-G----~dv~F~d~~~~~~nVsVvIspv~~~sl~dfGsp~eVa~~Ll~~~~~~~sg~~a~ll  162 (239)
                      ..+.+|..|.++.+.... |    .-.+|-|+.  ...+-++| +-+ .+=++   .+..+.+|+++.+....  .-.++
T Consensus        47 dGKl~FtLPag~sdqsgk~Gtq~nn~~vYad~t--g~kavIVi-~gD-~~~~~---Ld~la~rl~~qQr~rdp--~lqvv  117 (185)
T PRK11615         47 DGKLSFTLPADMSDQSGKLGTQANNMHVYADAT--GQKAVIVI-LGD-DTNED---LAVLAKRLEDQQRSRDP--QLQVV  117 (185)
T ss_pred             ccEEEEEcCCccccccccccccccceEEEEcCC--CCEEEEEE-eCC-CChhh---HHHHHHHHHHHHHhhCc--Cceee
Confidence            478999999999975532 3    224688843  23333233 211 11111   35667777776443321  23444


Q ss_pred             eceeeecCCCcEEEEEEEEEecCCCCcceEEEEE-EEeCCEEEEEEEeecCCCCCCcchhhHHHHHHHhhcccc
Q 026386          163 GASERSGHGGLKVYEFEYKVDSSRGGLKRIFSAA-FVASKKLYLLNITHSDKPESPLDTHTRMMLEEVLHSFDA  235 (239)
Q Consensus       163 ~a~er~~~dG~~YY~~Ey~v~s~~~~~~Rh~laa-tv~~gkLYtL~~qa~~~pE~rW~k~~~~~l~~vv~SF~v  235 (239)
                      .-+.-+. +|++++.++=++...+  .+-....+ +..++||-||.+..   |.+.-.+.. ...+.|+++..+
T Consensus       118 snK~i~i-~G~~~qQLDS~~t~~G--qk~~SSvvL~~v~~rl~tlQitl---pA~nqqqaq-~~ae~ii~tl~~  184 (185)
T PRK11615        118 TNKAIEL-KGHKLQQLDSIISAKG--QTAYSSVVLGKVDNQLLTMQITL---PADNQQQAQ-TTAENIINTLVI  184 (185)
T ss_pred             cceeEEE-CCeeeEEeeeeeecCC--ceEEEEEEEEeeCCeEEEEEEec---CCCCHHHHH-HHHHHHHhheec
Confidence            4444455 9999999997655443  33333344 88999999999999   888877777 688888887654

>PF12712 DUF3805: Domain of unknown function (DUF3805); InterPro: IPR024315 This entry represents an N-terminal domain found in a family of bacterial proteins, whose function is unknown

Probab=94.45  E-value=1.7  Score=36.17  Aligned_cols=131  Identities=14%  Similarity=0.220  Sum_probs=62.8

Q ss_pred             ceecccCCCCeEEecCCCCeeccccCceEEEeeCCCCCccEEEEEecCCCCCcccCCCHHHHHHHHHHHhhccCCCccee
Q 026386           81 LQRYTDSNEGFTLLRPSSWIKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQFVADKLIQAEKRKESTIDTE  160 (239)
Q Consensus        81 ~~~y~D~~~gYsf~yP~~W~~v~~~G~dv~F~d~~~~~~nVsVvIspv~~~sl~dfGsp~eVa~~Ll~~~~~~~sg~~a~  160 (239)
                      ++-|.++..=|++.||.+|.+..-..-..+|.||..=..|..++.-.-        |+ -.-|...+.++.+.  ...++
T Consensus         1 mkKfiSpg~WFS~~YP~~W~EfED~E~sflFYnp~~WTGNfRISayk~--------~~-~~ygk~~i~~EL~e--n~~a~   69 (153)
T PF12712_consen    1 MKKFISPGAWFSMEYPADWNEFEDGEGSFLFYNPDQWTGNFRISAYKG--------GS-AQYGKECIRQELKE--NPSAK   69 (153)
T ss_dssp             -EEEE-GGG-EEEEE-TT-EEE---TTEEEEE-SSS---EEEEEEEE----------S-TTHHHHHHHHHHHH---TT-E
T ss_pred             CCcccCCCceEEEecCCCcchhccCCcceEEEChHHhcCceEEEEEec--------cc-ccchHHHHHHHHHh--CCCcc
Confidence            356778888899999999999884333446999988888887554321        11 12233444442211  22345


Q ss_pred             EEeceeeecCCCcEEEEEEEEEecCCCCcceEEEEEEEeCCEEEEEEEeecCCCCCCcchhhHHHHHHHhhccccc
Q 026386          161 LIGASERSGHGGLKVYEFEYKVDSSRGGLKRIFSAAFVASKKLYLLNITHSDKPESPLDTHTRMMLEEVLHSFDAA  236 (239)
Q Consensus       161 ll~a~er~~~dG~~YY~~Ey~v~s~~~~~~Rh~laatv~~gkLYtL~~qa~~~pE~rW~k~~~~~l~~vv~SF~v~  236 (239)
                      +++..     ...--|.-|..-.... -+.-|+-. +-.++..|.+..+.   +-.   ... ...+.|+.|..|.
T Consensus        70 ~vkvg-----~~~caYs~E~f~eeg~-~YtsH~Wv-tg~~~~sfeCSFTv---~kg---~~~-~~aE~iiasL~vR  131 (153)
T PF12712_consen   70 LVKVG-----NWECAYSKEMFQEEGA-YYTSHLWV-TGEGDVSFECSFTV---PKG---ESV-KEAEEIIASLEVR  131 (153)
T ss_dssp             EEEET-----TEEEEEEEEEEEETTE-EEEEEEEE-EEETTEEEEEEEEE---ETT-------HHHHHHHHH-EE-
T ss_pred             eEEec-----cEEEEEEhhhhhccCe-eEEEEEEE-EecCceEEEEEEEc---cCC---CCc-chHHHHHhhheeh
Confidence            55443     2234555554322111 01233333 56788888888887   322   122 4568888888763

In two related Bacteroides species, the gene for members of this family lies immediately upstream from a putative ATP binding component of an ATP transporter and a putative histidinol phosphatase. The structure of this domain is strikingly similar to the N-terminal structure of 1tui, also of unknown function. The domain carries four conserved tryptophan residues.; PDB: 3HLZ_A.

>PF10738 Lpp-LpqN: Probable lipoprotein LpqN; InterPro: IPR019674 This protein is conserved in Mycobacteriaceae and is likely to be a lipoprotein []

Probab=87.85  E-value=14  Score=31.73  Aligned_cols=132  Identities=14%  Similarity=0.153  Sum_probs=72.4

Q ss_pred             CeEEecCCCCeeccccCc---eEEEeeC-CC--CCccEEEEEecCCCCCcccCCCHHHHHHHHHHHhhccCCCcceeEEe
Q 026386           90 GFTLLRPSSWIKVDKAGA---TVLFEEA-NK--GTNNLGVVVNPVRVASLGEFGTPQFVADKLIQAEKRKESTIDTELIG  163 (239)
Q Consensus        90 gYsf~yP~~W~~v~~~G~---dv~F~d~-~~--~~~nVsVvIspv~~~sl~dfGsp~eVa~~Ll~~~~~~~sg~~a~ll~  163 (239)
                      .-++-.|.||........   -....++ .+  -.-|+-|+|..+.    .+| +|+|+.+.=-...... .+  .+-++
T Consensus        32 ~v~lP~P~GW~~~~~~~~~~a~~vi~~~~~~~~~~Pnavv~V~kL~----G~~-Dp~e~l~~a~~d~~~l-~g--~~~~~  103 (175)
T PF10738_consen   32 TVSLPTPPGWEPAPDPNPPWAYAVIVDPQADGGFPPNAVVTVSKLT----GDF-DPAEALEHAPADAQNL-PG--FRELD  103 (175)
T ss_pred             EEeccCCcCcccCCCCCCCceEEEEEeccccCCCCCceEEEEEecc----CCC-CHHHHHHhchhhHhhC-cC--ccccc
Confidence            456778999999875532   2223222 21  2347888887764    233 3555543211111111 11  22333


Q ss_pred             ceeeecCCCcEEEEEEEEEecCCCCcceEEEEE-E--EeCC--EEEEEEEeecCCCCCCcchhhHHHHHHHhhccccc
Q 026386          164 ASERSGHGGLKVYEFEYKVDSSRGGLKRIFSAA-F--VASK--KLYLLNITHSDKPESPLDTHTRMMLEEVLHSFDAA  236 (239)
Q Consensus       164 a~er~~~dG~~YY~~Ey~v~s~~~~~~Rh~laa-t--v~~g--kLYtL~~qa~~~pE~rW~k~~~~~l~~vv~SF~v~  236 (239)
                      ...-+- +|-+=+.+|-.-+..+  .+||...- .  ..++  +|-.|++++   .+.+=.... +..+.|++.|+|.
T Consensus       104 ~s~~~~-~GfpS~~i~GtY~~~g--~~~~~~~r~VV~~~~~~~Ylvqltvt~---~~~qa~~~~-~a~~aI~~g~~It  174 (175)
T PF10738_consen  104 GSPSDF-SGFPSSQIEGTYDKDG--MRLHTSQRTVVIPGDDQRYLVQLTVTT---TADQAVALA-DATEAIDEGFTIT  174 (175)
T ss_pred             CCcccc-CCCceeEEEEEEeeCC--EEeEeEEEEEEEeCCCcEEEEEEEeec---cccchhhhh-hHHHHHHcCCEec
Confidence            333333 7888888884333322  45555433 2  2244  555566677   777777777 6889999999984

>PF07174 FAP: Fibronectin-attachment protein (FAP); InterPro: IPR010801 This family contains bacterial fibronectin-attachment proteins (FAP)

Probab=85.02  E-value=25  Score=32.52  Aligned_cols=140  Identities=19%  Similarity=0.358  Sum_probs=72.3

Q ss_pred             eecccCCCCeEEecCCCCeecccc----CceEEEeeCCCC---------CccEEEEEecCC---CCCcccCCCHHHHHHH
Q 026386           82 QRYTDSNEGFTLLRPSSWIKVDKA----GATVLFEEANKG---------TNNLGVVVNPVR---VASLGEFGTPQFVADK  145 (239)
Q Consensus        82 ~~y~D~~~gYsf~yP~~W~~v~~~----G~dv~F~d~~~~---------~~nVsVvIspv~---~~sl~dfGsp~eVa~~  145 (239)
                      -++.+...||+|.+|.||++.+..    |....=+-..+.         .+.-+|+...+.   +.+.+-  +-...|.+
T Consensus       110 grvdn~~gGFS~vvP~GW~~Sda~~L~yG~alls~~~~~~~~~~~~~p~andt~v~lgrld~kl~a~ae~--dn~kaa~r  187 (297)
T PF07174_consen  110 GRVDNAAGGFSYVVPAGWVESDASHLDYGSALLSKQTGEPPMPGQPPPVANDTSVVLGRLDLKLFASAEP--DNTKAAVR  187 (297)
T ss_pred             ccccccccceEEeccCCccccccceeecceeeeccCCCCCCCCCCCCCcCCCceEEeccccccccccccC--ChHHHHHH
Confidence            356667899999999999998843    555443221111         123455555553   222221  33457788


Q ss_pred             HHHHhh----ccCC---CcceeEEeceeeecCCCcEEEEEEEEEec-CCCCcceEEEEE-EE--e-------CCEEEEEE
Q 026386          146 LIQAEK----RKES---TIDTELIGASERSGHGGLKVYEFEYKVDS-SRGGLKRIFSAA-FV--A-------SKKLYLLN  207 (239)
Q Consensus       146 Ll~~~~----~~~s---g~~a~ll~a~er~~~dG~~YY~~Ey~v~s-~~~~~~Rh~laa-tv--~-------~gkLYtL~  207 (239)
                      |..+..    +-..   +|+..-+++.--.  +---||+..|.=.+ ++|   .+...+ ..  .       .-|-|.+=
T Consensus       188 l~sdmgeffmp~pg~rinq~~~~l~~~g~~--g~asyyevkf~d~~kp~g---qiw~~vvg~p~~~~~~~~~~~rwfvvw  262 (297)
T PF07174_consen  188 LASDMGEFFMPYPGTRINQETTPLDANGMP--GSASYYEVKFTDANKPNG---QIWAGVVGSPVAPGTPRGTPQRWFVVW  262 (297)
T ss_pred             HhccccceeccCCCccccccccccccCCcc--cceeEEEEEeccCCCCCC---ceEEEeecCcCCCCCCCCCCceEEEEE
Confidence            887732    2122   2334445543221  33467777664222 232   233333 21  1       23888888


Q ss_pred             EeecCCCCCCcchhhHHHHHHHhhccc
Q 026386          208 ITHSDKPESPLDTHTRMMLEEVLHSFD  234 (239)
Q Consensus       208 ~qa~~~pE~rW~k~~~~~l~~vv~SF~  234 (239)
                      +.+   ....-+|...   +...+|-|
T Consensus       263 lgt---~~~pvd~~~a---~~la~si~  283 (297)
T PF07174_consen  263 LGT---ANNPVDKGAA---KALAESIR  283 (297)
T ss_pred             ecC---CCCCCCHHHH---HHHHhhcc
Confidence            887   5555666553   34444443

Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix [].; GO: 0050840 extracellular matrix binding, 0005576 extracellular region

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	239
2xb3_A	165	The Structure Of Cyanobacterial Psbp Length = 165		2e-07
2lnj_A	170	Solution Structure Of Cyanobacterial Psbp (Cyanop)		4e-06

>pdb|2XB3|A Chain A, The Structure Of Cyanobacterial Psbp Length = 165

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 67/136 (49%), Gaps = 8/136 (5%)
Query: 81  LQRYTDSNEGFTLLRPSSWIKVD-KAGATVLFEEANKGTNNLGVVVNPV-RVASLGEFGT 138
           LQ Y DS +G+  L P  W++V  +    V+F +  + T N+ VVVN V    SL E G+
Sbjct: 8   LQAYVDSYDGYEFLYPRGWVQVQVEDPVDVVFHDIIETTENVSVVVNTVASTKSLEELGS 67
Query: 139 PQFVADKLIQ-AEKRKESTIDTELIGASERSGHGGLKVYEFEYKV----DSSRGGLKRIF 193
           P+ V D+L++      ES   + LI A+ +        Y  EY V    D +    +   
Sbjct: 68  PEEVGDRLLRNIIAPSESGRSSALIAATSQKADDK-TYYILEYAVTLPGDGNTAQQRHNL 126
Query: 194 SAAFVASKKLYLLNIT 209
           S+  V+  K+Y L+++
Sbjct: 127 SSIAVSRGKVYTLSVS 142

>pdb|2LNJ|A Chain A, Solution Structure Of Cyanobacterial Psbp (Cyanop) From Synechocystis Sp. Pcc 6803 Length = 170

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 54/108 (50%), Gaps = 7/108 (6%)
Query: 81  LQRYTDSNEGFTLLRPSSWIKVDKAGAT----VLFEEANKGTNNLGVVVNPV-RVASLGE 135
           LQRY+D+ +G+  L P+ WI VD  GA+    V+F +  +   NL V+++ +    +L +
Sbjct: 14  LQRYSDTKDGYEFLYPNGWIGVDVKGASPGVDVVFRDLIERDENLSVIISEIPSDKTLTD 73
Query: 136 FGTPQFVADKLIQ-AEKRKESTIDTELIGASERSGHGGLKVYEFEYKV 182
            GT   V  + ++      +     ELI A  R   G +  Y  EY+V
Sbjct: 74  LGTATDVGYRFMKTVNDASQGDRQAELINAEARDEDGQV-YYTLEYRV 120

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	239
2lnj_A	170	SLL1418 protein, putative uncharacterized protein	7e-27
2xb3_A	165	PSBP protein; photosynthesis, zinc-binding, photos	6e-25
2vu4_A	273	Oxygen-evolving enhancer protein 2; kDa protein, t	1e-24
1v2b_A	177	23-kDa polypeptide of photosystem II oxygen- evolv	2e-23

>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP} Length = 170

 Score =  100 bits (250), Expect = 7e-27
 Identities = 39/170 (22%), Positives = 70/170 (41%), Gaps = 11/170 (6%)

Query: 70  LSKASLPEEMELQRYTDSNEGFTLLRPSSWIKVDKAGAT----VLFEEANKGTNNLGVVV 125
           L          LQRY+D+ +G+  L P+ WI VD  GA+    V+F +  +   NL V++
Sbjct: 3   LGSCGGVGIASLQRYSDTKDGYEFLYPNGWIGVDVKGASPGVDVVFRDLIERDENLSVII 62

Query: 126 NPV-RVASLGEFGTPQFVADKLI-QAEKRKESTIDTELIGASERSGHGGLKVYEFEYKVD 183
           + +    +L + GT   V  + +       +     ELI A  R    G   Y  EY+V 
Sbjct: 63  SEIPSDKTLTDLGTATDVGYRFMKTVNDASQGDRQAELINAEAR-DEDGQVYYTLEYRVL 121

Query: 184 SSRGGLKRIFSAAFVASKKLYLLNITHSDKPESPLDTHTRMMLEEVLHSF 233
                 +   ++      KL   +++ ++     +    + + + V  SF
Sbjct: 122 VGDNVERHDLASVTTNRGKLITFDLSTAEDRWDTV----KSLFDTVASSF 167

>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus} Length = 165

 Score = 95.7 bits (237), Expect = 6e-25
 Identities = 44/160 (27%), Positives = 75/160 (46%), Gaps = 12/160 (7%)

Query: 81  LQRYTDSNEGFTLLRPSSWIKVD-KAGATVLFEEANKGTNNLGVVVNPV-RVASLGEFGT 138
           LQ Y DS +G+  L P  W++V  +    V+F +  + T N+ VVVN V    SL E G+
Sbjct: 8   LQAYVDSYDGYEFLYPRGWVQVQVEDPVDVVFHDIIETTENVSVVVNTVASTKSLEELGS 67

Query: 139 PQFVADKLIQAE-KRKESTIDTELIGASERSGHGGLKVYEFEYKV----DSSRGGLKRIF 193
           P+ V D+L++      ES   + LI A+ +        Y  EY V    D +    +   
Sbjct: 68  PEEVGDRLLRNIIAPSESGRSSALIAATSQKA-DDKTYYILEYAVTLPGDGNTAQQRHNL 126

Query: 194 SAAFVASKKLYLLNITHSDKPESPLDTHTRMMLEEVLHSF 233
           S+  V+  K+Y L+++  ++    +        + ++ SF
Sbjct: 127 SSIAVSRGKVYTLSVSAPEERWPKV----EDQFKTIVSSF 162

>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2 Length = 177

 Score = 92.2 bits (228), Expect = 2e-23
 Identities = 36/176 (20%), Positives = 63/176 (35%), Gaps = 25/176 (14%)

Query: 80  ELQRYTDSNEGFTLLRPSSWI---KVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEF 136
           + Q Y    +GF L  PS W    +V+  G  + FE+    T+N+ V + P    S+ +F
Sbjct: 8   DFQTYNG--DGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDF 65

Query: 137 GTPQFVADKL--------------IQAEKRKESTIDTELIGASERSGHGGLKVYEFEYKV 182
           G+P+    ++               +     ++     ++  S     GG + Y      
Sbjct: 66  GSPEQFLSQVDYLLGRQAYSGKTDSEGGFESDAVAIANVLETSTAE-VGGKQYYYLSILT 124

Query: 183 DSSRG--GLKRIFSAAFVASKKLYLLNITHSDKPESPLDTHTRMMLEEVLHSFDAA 236
            ++ G  G K     A V   KLY+         +       +  +E    SF  A
Sbjct: 125 RTADGNEGGKHQLVTATVNDGKLYICKAQ---AGDKRWFKGAKKFVENTATSFSLA 177

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	239
2xb3_A	165	PSBP protein; photosynthesis, zinc-binding, photos	100.0
1v2b_A	177	23-kDa polypeptide of photosystem II oxygen- evolv	100.0
2lnj_A	170	SLL1418 protein, putative uncharacterized protein	100.0
1tu1_A	148	Hypothetical protein PA0094; structural genomics,	98.4
3lyd_A	161	Uncharacterized protein; PSI-2, MCSG, GEBA, genomi	97.26
3hlz_A	269	Uncharacterized protein BT_1490; NP_810393.1, stru	80.88

>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus}

Probab=100.00  E-value=2.2e-39  Score=269.60  Aligned_cols=154  Identities=29%  Similarity=0.466  Sum_probs=141.0

Q ss_pred             ccCceecccCCCCeEEecCCCCeecccc-CceEEEeeCCCCCccEEEEEecCC-CCCcccCCCHHHHHHHHHHH-hhccC
Q 026386           78 EMELQRYTDSNEGFTLLRPSSWIKVDKA-GATVLFEEANKGTNNLGVVVNPVR-VASLGEFGTPQFVADKLIQA-EKRKE  154 (239)
Q Consensus        78 ~~g~~~y~D~~~gYsf~yP~~W~~v~~~-G~dv~F~d~~~~~~nVsVvIspv~-~~sl~dfGsp~eVa~~Ll~~-~~~~~  154 (239)
                      ..||++|.|+.+||+|.||.+|+++.++ |++++|+||.+..+||+|+|+|++ .++|++||+|++||++|+++ +++++
T Consensus         5 ~~g~~~~~D~~~gysf~~P~~W~~~~~~~g~~v~f~d~~~~~~~v~V~v~p~~~~~~l~~~G~~e~va~~l~~~~~~~~~   84 (165)
T 2xb3_A            5 TSGLQAYVDSYDGYEFLYPRGWVQVQVEDPVDVVFHDIIETTENVSVVVNTVASTKSLEELGSPEEVGDRLLRNIIAPSE   84 (165)
T ss_dssp             -CCEEEEEETTTTEEEEEETTEEEECCCTTEEEEEEESSCTTSEEEEEEEECSSCCCSGGGCCHHHHHHHHHHHTTSCTT
T ss_pred             CCCceEEEcCCCCEEEEcCCCCeEecCCCCceEEEECcccCCceEEEEEecCCCCCChHHcCCHHHHHHHHHHHhhcCCC
Confidence            3699999999999999999999999998 999999999998999999999997 59999999999999999998 66677


Q ss_pred             CCcceeEEeceeeecCCCcEEEEEEEEEecCCC---CcceEEEEE-EEeCCEEEEEEEeecCCCCCCcchhhHHHHHHHh
Q 026386          155 STIDTELIGASERSGHGGLKVYEFEYKVDSSRG---GLKRIFSAA-FVASKKLYLLNITHSDKPESPLDTHTRMMLEEVL  230 (239)
Q Consensus       155 sg~~a~ll~a~er~~~dG~~YY~~Ey~v~s~~~---~~~Rh~laa-tv~~gkLYtL~~qa~~~pE~rW~k~~~~~l~~vv  230 (239)
                      +++.++|+++.+|+. +|++||+|||.++++++   +..||.+++ ++.+||||+|++|+   ||++|++++ +.|++|+
T Consensus        85 ~~~~~~l~~a~~r~~-~G~~yY~~Ey~~~~~~~~~~~~~rh~l~~~~v~~g~lY~l~~sa---pe~~w~~~~-~~l~~v~  159 (165)
T 2xb3_A           85 SGRSSALIAATSQKA-DDKTYYILEYAVTLPGDGNTAQQRHNLSSIAVSRGKVYTLSVSA---PEERWPKVE-DQFKTIV  159 (165)
T ss_dssp             SSCEEEEEEEEEEEE-TTEEEEEEEEEEECC-----CCEEEEEEEEEEETTEEEEEEEEE---EGGGHHHHH-HHHHHHH
T ss_pred             CCcceEEEEeeeeec-CCceEEEEEEEEecCCCccCccccEEEEEEEEECCEEEEEEEec---CHHHhHHHH-HHHHHHH
Confidence            889999999999976 99999999999999872   247888877 99999999999999   999999999 8999999


Q ss_pred             hccccc
Q 026386          231 HSFDAA  236 (239)
Q Consensus       231 ~SF~v~  236 (239)
                      +||+|.
T Consensus       160 ~SF~v~  165 (165)
T 2xb3_A          160 SSFTVY  165 (165)
T ss_dssp             HTCEEC
T ss_pred             hhEEeC
Confidence            999974

>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2

Probab=100.00  E-value=2e-39  Score=274.86  Aligned_cols=151  Identities=22%  Similarity=0.326  Sum_probs=127.3

Q ss_pred             cCceecccCCCCeEEecCCCCeecc---ccCceEEEeeCCCCCccEEEEEecCCCCCcccCCCHHHH----HHHHHHH-h
Q 026386           79 MELQRYTDSNEGFTLLRPSSWIKVD---KAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQFV----ADKLIQA-E  150 (239)
Q Consensus        79 ~g~~~y~D~~~gYsf~yP~~W~~v~---~~G~dv~F~d~~~~~~nVsVvIspv~~~sl~dfGsp~eV----a~~Ll~~-~  150 (239)
                      .||++|.  .+||+|+||.+|++++   .+|+|++|+|+++..+||+|+|+|+++++|+|||+|++|    +++|.++ +
T Consensus         7 ~g~~~y~--~~gysf~yP~~W~~~~~~~~~G~~~~f~d~~~~~~nvsV~v~p~~~~si~dlGspe~~~~~v~~~l~~~~~   84 (177)
T 1v2b_A            7 TDFQTYN--GDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQVDYLLGRQAY   84 (177)
T ss_dssp             CCEEEEE--CSSEEEEEETTCEECCCCCSTTEEEEEEETTEEEEEEEEEEEECSCSSGGGGCSHHHHHHHTGGGC-----
T ss_pred             CCceEEe--cCCEEEEcCCCCcccccccCCCceEEEeCCcCCCccEEEEEeCCCCCChhHCCCHHHHHHHHHHHHHHHhh
Confidence            6999998  8999999999999765   459999999999999999999999999999999999995    6666665 4


Q ss_pred             hc---c------CCCcceeEEeceeeecCCCcEEEEEEEEEecCCC-CcceEEEEE-EEeCCEEEEEEEeecCCCCCCcc
Q 026386          151 KR---K------ESTIDTELIGASERSGHGGLKVYEFEYKVDSSRG-GLKRIFSAA-FVASKKLYLLNITHSDKPESPLD  219 (239)
Q Consensus       151 ~~---~------~sg~~a~ll~a~er~~~dG~~YY~~Ey~v~s~~~-~~~Rh~laa-tv~~gkLYtL~~qa~~~pE~rW~  219 (239)
                      ++   .      ++.+.++||++.+|+. ||++||+|||.++++++ ++.||.+++ +|+|||||+|++|+   ||+||+
T Consensus        85 ~~~~~~~~gf~~~~~~~a~ll~a~~r~~-~G~~YY~~E~~~~~~~g~e~~rH~l~~~tv~~gkLY~l~~~a---~e~~W~  160 (177)
T 1v2b_A           85 SGKTDSEGGFESDAVAIANVLETSTAEV-GGKQYYYLSILTRTADGNEGGKHQLVTATVNDGKLYICKAQA---GDKRWF  160 (177)
T ss_dssp             -------------CCCEEEEEEEEEEEE-TTEEEEEEEEEEEC-----CCEEEEEEEEEETTEEEEEEEEE---EGGGCS
T ss_pred             cccccccCCcccCcccceEEEEeEEEEe-CCeEEEEEEEEEecCCCCccccEEEEEEEEECCEEEEEEEec---CHHHhh
Confidence            43   2      2337899999999998 99999999999999873 246888876 99999999999999   999999


Q ss_pred             hh-hHHHHHHHhhccccc
Q 026386          220 TH-TRMMLEEVLHSFDAA  236 (239)
Q Consensus       220 k~-~~~~l~~vv~SF~v~  236 (239)
                      ++ + +.|++|++||+|.
T Consensus       161 k~~~-~~l~~v~~SF~v~  177 (177)
T 1v2b_A          161 KGAK-KFVENTATSFSLA  177 (177)
T ss_dssp             TTTT-HHHHHHHHTCEEC
T ss_pred             hhHH-HHHHHHHhheecC
Confidence            96 8 8999999999984

>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP}

Probab=100.00  E-value=1.2e-40  Score=279.68  Aligned_cols=152  Identities=28%  Similarity=0.488  Sum_probs=142.0

Q ss_pred             cCceecccCCCCeEEecCCCCeecccc----CceEEEeeCCCCCccEEEEEecCCC-CCcccCCCHHHHHHHHHHH-hhc
Q 026386           79 MELQRYTDSNEGFTLLRPSSWIKVDKA----GATVLFEEANKGTNNLGVVVNPVRV-ASLGEFGTPQFVADKLIQA-EKR  152 (239)
Q Consensus        79 ~g~~~y~D~~~gYsf~yP~~W~~v~~~----G~dv~F~d~~~~~~nVsVvIspv~~-~sl~dfGsp~eVa~~Ll~~-~~~  152 (239)
                      .||++|.|+.+||+|.||++|++++++    |+|++|+||.+..+||+|+|+|++. ++|+|||+|++||++|+++ +++
T Consensus        12 ~g~~~y~d~~~gy~f~~P~gW~~~~~~~~~~g~~v~f~d~~~~~~nvsV~v~p~~~~~si~d~G~pe~va~~l~~~~~~~   91 (170)
T 2lnj_A           12 ASLQRYSDTKDGYEFLYPNGWIGVDVKGASPGVDVVFRDLIERDENLSVIISEIPSDKTLTDLGTATDVGYRFMKTVNDA   91 (170)
Confidence            699999999999999999999998877    9999999999999999999999985 9999999999999999999 677


Q ss_pred             cCCCcceeEEeceeeecCCCcEEEEEEEEEecCCCCcceEEEEE-EEeCCEEEEEEEeecCCCCCCcchhhHHHHHHHhh
Q 026386          153 KESTIDTELIGASERSGHGGLKVYEFEYKVDSSRGGLKRIFSAA-FVASKKLYLLNITHSDKPESPLDTHTRMMLEEVLH  231 (239)
Q Consensus       153 ~~sg~~a~ll~a~er~~~dG~~YY~~Ey~v~s~~~~~~Rh~laa-tv~~gkLYtL~~qa~~~pE~rW~k~~~~~l~~vv~  231 (239)
                      +++++.++||++.+|+. ||++||+|||.++++++ ..||.+++ ++++||||+|++|+   ||++|++++ +.|++|++
T Consensus        92 ~~~~~~a~li~a~~~~~-~G~~yY~~Ey~~~~~~~-~~rh~l~~~~v~~gklY~l~~~a---pe~~w~~~~-~~l~~v~~  165 (170)
T 2lnj_A           92 SQGDRQAELINAEARDE-DGQVYYTLEYRVLVGDN-VERHDLASVTTNRGKLITFDLST---AEDRWDTVK-SLFDTVAS  165 (170)
Confidence            78889999999999976 99999999999999844 57888877 99999999999999   999999999 89999999


Q ss_pred             ccccc
Q 026386          232 SFDAA  236 (239)
Q Consensus       232 SF~v~  236 (239)
                      ||+|.
T Consensus       166 SF~v~  170 (170)
T 2lnj_A          166 SFHVY  170 (170)
Confidence            99974

>1tu1_A Hypothetical protein PA0094; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; 1.95A {Pseudomonas aeruginosa} SCOP: d.107.1.3

Probab=98.40  E-value=1.7e-05  Score=64.16  Aligned_cols=139  Identities=9%  Similarity=0.138  Sum_probs=91.3

Q ss_pred             CceecccCCCCeEEecCCCCeeccccCceEEEeeCCCC-C--ccEEEEEecCCCCCcccCCCHHHHHHHHHHHhhccCCC
Q 026386           80 ELQRYTDSNEGFTLLRPSSWIKVDKAGATVLFEEANKG-T--NNLGVVVNPVRVASLGEFGTPQFVADKLIQAEKRKEST  156 (239)
Q Consensus        80 g~~~y~D~~~gYsf~yP~~W~~v~~~G~dv~F~d~~~~-~--~nVsVvIspv~~~sl~dfGsp~eVa~~Ll~~~~~~~sg  156 (239)
                      .+..|.  .+.++|..|.+|+...   ..+++ .+... .  -|+.|...++.     +=.+.++..++-++.+.+.-. 
T Consensus         2 ~m~~y~--~~Egsl~lP~gw~D~t---~nv~~-~~~~~~~g~~~lvIsR~~~~-----~~~~l~~~~~~q~~~l~~~l~-   69 (148)
T 1tu1_A            2 HMTLYR--LHEADLEIPDAWQDQS---INIFK-LPASGPAREASFVISRDASQ-----GDAPFADYVARQLENAEKQLP-   69 (148)
T ss_dssp             CEEEEE--CSSEEEEEETTSEECC---BEEEE-ECCBTTBCCEEEEEEEECCC-----TTSCHHHHHHHHHHHHHHHST-
T ss_pred             CCceEE--ECCEEEeCCCCcEeee---EEEEE-cCCCCCCCceEEEEEeccCC-----CCCCHHHHHHHHHHHHHhhCc-
Confidence            356677  7999999999999443   34444 33222 2  35555554443     213556666666555443322 


Q ss_pred             cceeEEeceeeecCCCcEEEEEEEEEecCCCCcceEEEEE-EEeCCEEEEEEEeecCCCCCCcchhhHHHHHHHhhcccc
Q 026386          157 IDTELIGASERSGHGGLKVYEFEYKVDSSRGGLKRIFSAA-FVASKKLYLLNITHSDKPESPLDTHTRMMLEEVLHSFDA  235 (239)
Q Consensus       157 ~~a~ll~a~er~~~dG~~YY~~Ey~v~s~~~~~~Rh~laa-tv~~gkLYtL~~qa~~~pE~rW~k~~~~~l~~vv~SF~v  235 (239)
                       .-+++....... +|.+--.+||.-...+  ..+|-.-+ .+..+++|.|+.++   +...|+..+ +.++.|++||++
T Consensus        70 -~y~~~~~~~~~l-~g~~a~~~e~~~~~~g--~~~~Q~q~~~~~~~~~l~~t~t~---~~~~~~~~~-~~~~~i~~Sf~~  141 (148)
T 1tu1_A           70 -GFKLHKRWDINI-HGHAAVLLDYQWQREG--RDLMLRQVFIERRPAVLITTLTT---TPADLPHHE-PAWKQAMQTLVP  141 (148)
T ss_dssp             -TCEEEEEEEEEE-TTEEEEEEEEEEEETT--EEEEEEEEEECCSSSEEEEEEEE---CGGGHHHHH-HHHHHHHHTCEE
T ss_pred             -CcEEeeeEeEEE-cCCcEEEEEEEEccCC--EEEEEEEEEEEECCeEEEEEEEc---CCCCCHHHH-HHHHHHHHhccc
Confidence             234444444443 6778888888777444  45666655 55555999999999   999999999 899999999998


Q ss_pred             cCC
Q 026386          236 APT  238 (239)
Q Consensus       236 ~p~  238 (239)
                      .++
T Consensus       142 ~~~  144 (148)
T 1tu1_A          142 RPT  144 (148)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            654

>3lyd_A Uncharacterized protein; PSI-2, MCSG, GEBA, genomic encyclopae bacteria and archaea, structural genomics, protein structur initiative; HET: MSE; 1.45A {Jonesia denitrificans}

Probab=97.26  E-value=0.014  Score=48.33  Aligned_cols=134  Identities=16%  Similarity=0.146  Sum_probs=84.1

Q ss_pred             CCeEEecCCCCeeccccCceEEEeeCC---CCCccEEEEEecCCCCCcccCCCHHHHHHHHHHHhhccCCCcceeEEece
Q 026386           89 EGFTLLRPSSWIKVDKAGATVLFEEAN---KGTNNLGVVVNPVRVASLGEFGTPQFVADKLIQAEKRKESTIDTELIGAS  165 (239)
Q Consensus        89 ~gYsf~yP~~W~~v~~~G~dv~F~d~~---~~~~nVsVvIspv~~~sl~dfGsp~eVa~~Ll~~~~~~~sg~~a~ll~a~  165 (239)
                      -++++-.|.||+.....|.-....+..   .-.-|+-|++.-.+..    +  .++.-..|-+.+..-   ..-++++-.
T Consensus        18 p~~~v~~P~gWe~~~~~~~~~~~~~~~~~~~F~pN~vVtv~r~~~~----~--~e~~r~el~~~~~~l---p~~~~~~r~   88 (161)
T 3lyd_A           18 TGFTVPIPETWQPDPTMGTQFAARPHTPPQGFTPNIIGTVRRAATG----A--LHNQRTELDQRATQL---PDYAERGRT   88 (161)
T ss_dssp             CEEEEECCTTEEECTTSSSSEEEEESSCCSSSCCEEEEEEEEECTT----H--HHHHHHHHHHHHTTS---TTCEEEEEE
T ss_pred             ceeeccCCCCceEcCCCCceEEeccCCCCCCccccEEEEEEecCcH----H--HHHHHHHHHHHHhhC---CCcEeeccc
Confidence            478899999999997666533333322   2345888888766511    1  222222222212211   123444433


Q ss_pred             eeecCCCcEEEEEEEEEecCCCCcceE---EEEE-EEeCCEEEEE--EEeecCCCCCCcchhhHHHHHHHhhcccccCC
Q 026386          166 ERSGHGGLKVYEFEYKVDSSRGGLKRI---FSAA-FVASKKLYLL--NITHSDKPESPLDTHTRMMLEEVLHSFDAAPT  238 (239)
Q Consensus       166 er~~~dG~~YY~~Ey~v~s~~~~~~Rh---~laa-tv~~gkLYtL--~~qa~~~pE~rW~k~~~~~l~~vv~SF~v~p~  238 (239)
                      ..+. +|.+-|..||.=..+.+  +.+   ...+ ...++..|.+  +++|   .+.+-+... ..++.+++|+++.|-
T Consensus        89 ~~~~-~G~pa~~iey~y~~~~~--g~~aq~~~~vvve~~~v~~vv~lt~T~---~~~q~~~~~-~d~q~iv~sl~v~p~  160 (161)
T 3lyd_A           89 ETTV-DGFPAYHIEYAYRHHGT--ITIAQMITLVEVSHPHAVDIIQLTATC---AGDQTADYW-DTFRLMHADLTVQPH  160 (161)
T ss_dssp             EEEE-TTEEEEEEEEEEEETTT--EEEEEEEEEEEEECSSCEEEEEEEEEE---EGGGHHHHH-HHHHHHHHTCEEETT
T ss_pred             cccc-CCcccEEEEEEEecCCC--ceEeeEEEEEEEecCCEEEEEEEEEEe---ccccchHHH-HHHHHHhheeEeccC
Confidence            3444 99999999998766653  344   2223 4456777777  8888   778888888 799999999999984

>3hlz_A Uncharacterized protein BT_1490; NP_810393.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}

Probab=80.88  E-value=1.9  Score=37.72  Aligned_cols=44  Identities=18%  Similarity=0.428  Sum_probs=35.5

Q ss_pred             eecccCCCCeEEecCCCCeeccccCceEEEeeCCCCCccEEEEE
Q 026386           82 QRYTDSNEGFTLLRPSSWIKVDKAGATVLFEEANKGTNNLGVVV  125 (239)
Q Consensus        82 ~~y~D~~~gYsf~yP~~W~~v~~~G~dv~F~d~~~~~~nVsVvI  125 (239)
                      +-|.+++.=|++.||.+|.+.+-..-.-+|.||..=..|..+.-
T Consensus         5 kk~ISPgaWfs~~yP~~W~EfEd~E~sflFynp~~WtGNfRISa   48 (269)
T 3hlz_A            5 KKFISPGAWFSMNYPSDWNEFEDGEGSFLFYNPDVWTGNFRISA   48 (269)
T ss_dssp             EEEECGGGCEEEEECTTCEEECCCTTEEEEECSSSCCCEEEEEE
T ss_pred             ceeecCCceeEEecCCCcccccCCCCceeeeChhhcccceEEEe
Confidence            45788888999999999999886544457999988888887554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	239
d1v2ba_	171	d.107.1.2 (A:) Oxygen-evolving enhancer protein Ps	4e-26

>d1v2ba_ d.107.1.2 (A:) Oxygen-evolving enhancer protein PsbP {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 171

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PsbP-like
domain: Oxygen-evolving enhancer protein PsbP
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 97.8 bits (243), Expect = 4e-26
 Identities = 36/176 (20%), Positives = 63/176 (35%), Gaps = 25/176 (14%)

Query: 80  ELQRYTDSNEGFTLLRPSSWI---KVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEF 136
           + Q Y    +GF L  PS W    +V+  G  + FE+    T+N+ V + P    S+ +F
Sbjct: 2   DFQTYNG--DGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDF 59

Query: 137 GTPQFVADKL--------------IQAEKRKESTIDTELIGASERSGHGGLKVYEFEYKV 182
           G+P+    ++               +     ++     ++  S     GG + Y      
Sbjct: 60  GSPEQFLSQVDYLLGRQAYSGKTDSEGGFESDAVAIANVLETSTAE-VGGKQYYYLSILT 118

Query: 183 DSSRG--GLKRIFSAAFVASKKLYLLNITHSDKPESPLDTHTRMMLEEVLHSFDAA 236
            ++ G  G K     A V   KLY+         +       +  +E    SF  A
Sbjct: 119 RTADGNEGGKHQLVTATVNDGKLYICKAQA---GDKRWFKGAKKFVENTATSFSLA 171

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	239
d1v2ba_	171	Oxygen-evolving enhancer protein PsbP {Common toba	100.0
d1tu1a_	144	Hypothetical protein PA0094 {Pseudomonas aeruginos	98.82

>d1v2ba_ d.107.1.2 (A:) Oxygen-evolving enhancer protein PsbP {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PsbP-like
domain: Oxygen-evolving enhancer protein PsbP
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=100.00  E-value=2.6e-39  Score=269.46  Aligned_cols=151  Identities=21%  Similarity=0.337  Sum_probs=128.7

Q ss_pred             CceecccCCCCeEEecCCCCeecc---ccCceEEEeeCCCCCccEEEEEecCCCCCcccCCCHHHHHHHHHHHh-----h
Q 026386           80 ELQRYTDSNEGFTLLRPSSWIKVD---KAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQFVADKLIQAE-----K  151 (239)
Q Consensus        80 g~~~y~D~~~gYsf~yP~~W~~v~---~~G~dv~F~d~~~~~~nVsVvIspv~~~sl~dfGsp~eVa~~Ll~~~-----~  151 (239)
                      +|++|.|  |||+|+||++|+++.   .+|+|++|+|+++..+||+|+|+|+.+.+|++||+|+++++.+...+     .
T Consensus         2 ~~~~y~~--dgy~f~~P~~W~~~~~~~~~g~d~~f~d~~~~~~nv~V~v~p~~~~sl~~~G~p~~~~~~v~~~l~~~~~~   79 (171)
T d1v2ba_           2 DFQTYNG--DGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQVDYLLGRQAYS   79 (171)
T ss_dssp             CEEEEEC--SSEEEEEETTCEECCCCCSTTEEEEEEETTEEEEEEEEEEEECSCSSGGGGCSHHHHHHHTGGGC------
T ss_pred             CcccccC--CCEEEECCCCCceecccCCCCceEEEeccccCCceEEEEEecCCCcchhhccChHHHHHHHHHHHhhhhhc
Confidence            6899997  899999999998765   34899999999999999999999999999999999999887775442     1


Q ss_pred             ---------ccCCCcceeEEeceeeecCCCcEEEEEEEEEecCCC-CcceEEEEE-EEeCCEEEEEEEeecCCCCCCcch
Q 026386          152 ---------RKESTIDTELIGASERSGHGGLKVYEFEYKVDSSRG-GLKRIFSAA-FVASKKLYLLNITHSDKPESPLDT  220 (239)
Q Consensus       152 ---------~~~sg~~a~ll~a~er~~~dG~~YY~~Ey~v~s~~~-~~~Rh~laa-tv~~gkLYtL~~qa~~~pE~rW~k  220 (239)
                               ..+.++.++|+++.+++. ||++||+|||.++++++ .+.||.+++ +|.+||||||++|+   ||++|++
T Consensus        80 ~~~~~~~~~~~~~~~~a~v~~a~~~~~-~G~~YY~~Ey~~~~~~~~~~~rh~l~~~~v~~grLYtl~~~~---pe~~w~~  155 (171)
T d1v2ba_          80 GKTDSEGGFESDAVAIANVLETSTAEV-GGKQYYYLSILTRTADGNEGGKHQLVTATVNDGKLYICKAQA---GDKRWFK  155 (171)
T ss_dssp             ------------CCCEEEEEEEEEEEE-TTEEEEEEEEEEEC-----CCEEEEEEEEEETTEEEEEEEEE---EGGGCST
T ss_pred             ccccccccccccccceeEEEEeeeeec-CCEEEEEEEEEEecCCCCCcccEEEEEEEEeCCEEEEEEEec---CHHHhhh
Confidence                     124566799999999997 99999999999998854 357898888 99999999999999   9999998


Q ss_pred             hhHHHHHHHhhccccc
Q 026386          221 HTRMMLEEVLHSFDAA  236 (239)
Q Consensus       221 ~~~~~l~~vv~SF~v~  236 (239)
                      +.++.|++|++||+|.
T Consensus       156 ~~~~~l~~~v~SF~v~  171 (171)
T d1v2ba_         156 GAKKFVENTATSFSLA  171 (171)
T ss_dssp             TTTHHHHHHHHTCEEC
T ss_pred             hhHHHHHHHHhceEeC
Confidence            6437899999999984

>d1tu1a_ d.107.1.3 (A:) Hypothetical protein PA0094 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PA0094-like
domain: Hypothetical protein PA0094
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.82  E-value=9.1e-08  Score=75.05  Aligned_cols=140  Identities=9%  Similarity=0.131  Sum_probs=98.6

Q ss_pred             CceecccCCCCeEEecCCCCeeccccCceEE-EeeCCCC-CccEEEEEecCCCCCcccCCCHHHHHHHHHHHhhccCCCc
Q 026386           80 ELQRYTDSNEGFTLLRPSSWIKVDKAGATVL-FEEANKG-TNNLGVVVNPVRVASLGEFGTPQFVADKLIQAEKRKESTI  157 (239)
Q Consensus        80 g~~~y~D~~~gYsf~yP~~W~~v~~~G~dv~-F~d~~~~-~~nVsVvIspv~~~sl~dfGsp~eVa~~Ll~~~~~~~sg~  157 (239)
                      .+..|.  .+.=+|.+|.+|++-..   .++ +.+.... .-||.|+..+..     +=.+++++.++.+..+.+.-  .
T Consensus         2 ~~~~Y~--~~Egs~~lP~gw~d~t~---ni~~~~~~~~~~~~~lvIsr~~l~-----~~~~l~~~~~~~~~~l~~~l--~   69 (144)
T d1tu1a_           2 HMTLYR--LHEADLEIPDAWQDQSI---NIFKLPASGPAREASFVISRDASQ-----GDAPFADYVARQLENAEKQL--P   69 (144)
T ss_dssp             CEEEEE--CSSEEEEEETTSEECCB---EEEEECCBTTBCCEEEEEEEECCC-----TTSCHHHHHHHHHHHHHHHS--T
T ss_pred             CCceeE--EcCEEEeCCCCceeCcc---eEEEecCCCCCcceEEEEEeecCC-----CCCCHHHHHHHHHHHHHhhC--C
Confidence            355666  45559999999986432   233 2332221 235555555543     32477888888888876542  2


Q ss_pred             ceeEEeceeeecCCCcEEEEEEEEEecCCCCcceEEEEE-EEeCCEEEEEEEeecCCCCCCcchhhHHHHHHHhhccccc
Q 026386          158 DTELIGASERSGHGGLKVYEFEYKVDSSRGGLKRIFSAA-FVASKKLYLLNITHSDKPESPLDTHTRMMLEEVLHSFDAA  236 (239)
Q Consensus       158 ~a~ll~a~er~~~dG~~YY~~Ey~v~s~~~~~~Rh~laa-tv~~gkLYtL~~qa~~~pE~rW~k~~~~~l~~vv~SF~v~  236 (239)
                      .-++++..+-+. +|.+-+..||.-...+  ...|-.-+ .+.++++|+|+.++   +...|+... +.++++++||+..
T Consensus        70 ~~~~~~~~~~~l-~g~pa~~~~~t~~~~~--~~v~Q~q~~~~~~~~~~~lt~t~---~~~~~~~~~-~~~~~il~Sf~p~  142 (144)
T d1tu1a_          70 GFKLHKRWDINI-HGHAAVLLDYQWQREG--RDLMLRQVFIERRPAVLITTLTT---TPADLPHHE-PAWKQAMQTLVPR  142 (144)
T ss_dssp             TCEEEEEEEEEE-TTEEEEEEEEEEEETT--EEEEEEEEEECCSSSEEEEEEEE---CGGGHHHHH-HHHHHHHHTCEEC
T ss_pred             CcEEEeeEeccc-CCCcEEEEEEEEeeCC--EeEEEEEEEEEeCCCEEEEEEec---CCcCCHHHH-HHHHHHHHhCccC
Confidence            356777665555 8999999999988654  44454544 77889999999999   999999988 8999999999998


Q ss_pred             CC
Q 026386          237 PT  238 (239)
Q Consensus       237 p~  238 (239)
                      |+
T Consensus       143 p~  144 (144)
T d1tu1a_         143 PT  144 (144)
T ss_dssp             CC
T ss_pred             CC
Confidence            85