Citrus Sinensis ID: 026388

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------24
Protein Sequence
MTDPNLYLQESGWEELRKEARKIEGDLDVKLSSYAKLGARFTQGGYVDTGSPTVGSGRSWKSMEMEIQSLLEKLLDINDAMSRCAASAAPTTSVTQKLARHRDILHEFTQEFRRIKGNINSMREHAELLSSVRDDISEYKASGSMSPRMQILRERAAIHGSITHIDDVISQAQTTRTVLGSQRALFGDVQGKVKVLSDKFPIIRGLLGSIRRRRSRDTLILAAVIAGCTLFLIIYWLSK
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHcHHHccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mtdpnlylqesGWEELRKEARKIEGDLDVKLSSYAKLGarftqggyvdtgsptvgsgrswKSMEMEIQSLLEKLLDINDAMSrcaasaapttsVTQKLARHRDILHEFTQEFRRIKGNINSMREHAELLSSVRDDIseykasgsmsprMQILRERAAIHGSITHIDDVISQAQTTRTVLGSqralfgdvqgkvkvlsdkfPIIRGLLGSIRRRRSRDTLILAAVIAGCTLFLIIYWLSK
Flexible Loop (DISEMBL)
mtdpnlylqesGWEELRKEARKIEGDLDVKLSSYAKLGArftqggyvdtgsptvgsgrswKSMEMEIQSLLEKLLDINDAMSRCAAsaapttsvtqklARHRDILHEFTQEFRRIKGNINSMREHAELLSSVRDDISEYkasgsmsprMQILRERAAIHGSITHIDDVISQAQTTRTVLGsqralfgdvqgkvkvlsdkfpiirgllgsirrrrsRDTLILAAVIAGCTLFLIIYWLSK
Low Complexity Region (SEG)
MTDPNLYLQESGWEELRKEARKIEGDLDVKLSSYAKLGARFTQGGYVDTGSPTVGSGRSWKSMEMEIQSLLEKLLDINDAMSRCAASAAPTTSVTQKLARHRDILHEFTQEFRRIKGNINSMREHAELLSSVRDDISEYKASGSMSPRMQILRERAAIHGSITHIDDVISQAQTTRTVLGSQRALFGDVQGKVKVLSDKFPIirgllgsirrrrsrDTLILAAVIAGCTLFLIIYWLSK
Disordered region (IsUnstruct)
************************GDLDVKLSSYAKLGARFTQGGYVDT****************EIQSLLEKLLDINDAMSRCA********VTQKLARHRDILHEFTQEFRRIKGN********************************ILRERAAIHGSITHIDDVISQAQTTRTVLGSQRALFGDVQGKVKVLSDKFPIIRGLLGSIRRRRSRDTLILAAVIAGCTLFLIIYWL**
Disordered Region (DISOPRED)
*************EELRKEARKIEGDLDVKLSSYAK**********************************LEKLLDIN**********************HRDILHEFTQEFRR******************************************************ISQAQTTRTVLGSQRALFGDVQGKVKVLSDKFPIIRGLLGSIRRRRSRDTLILAAVIAGCTLFLIIYWLSK
Disordered Region (DISEMBL)
MTDPNLYLQESGWEELRKEARKIEGDLDVKLSSYAKLGARFTQGGYVDTGSPTVGSGRSWKSMEMEIQSLLEKLLDINDAMSRC**************ARHRDILHEFTQEFRRIKGNINSMREHAELLSSVRDDISEYKASGSMSPRMQILRERAAIHGSITHIDDVISQAQTTRTVLGSQRALFGDVQGKVKVLSDKFPIIRGLLGSIRRRRSRDTLILAAVIAGCTLFLIIYWLSK
Disordered Region (DISPRO)
**********SGWEELRKEARKIEGDLDVKLSSYAKLGAR*******************WKSMEMEIQSLLEKLLDINDAMSRCAASAAPTTSVTQKLARHRDILHEFTQEFRRIKGNINSMREHAELLSSVRDDISEYKASGSMSPRMQILRERAAIHGSITHIDDVISQAQTTRTVLGSQRALFGDVQGKVKVLSDKFPIIRGLLGSIRRRRSRDTLILAAVIAGCTLFLIIYWLSK
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTDPNLYLQESGWEELRKEARKIEGDLDVKLSSYAKLGARFTQGGYVDTGSPTVGSGRSWKSMEMEIQSLLEKLLDINDAMSRCAASAAPTTSVTQKLARHRDILHEFTQEFRRIKGNINSMREHAELLSSVRDDISEYKASGSMSPRMQILRERAAIHGSITHIDDVISQAQTTRTVLGSQRALFGDVQGKVKVLSDKFPIIRGLLGSIRRRRSRDTLILAAVIAGCTLFLIIYWLSK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	239	2.2.26 [Sep-21-2011]
O22151	257	Golgi SNAP receptor compl	no	no	1.0	0.929	0.832	1e-121
O88630	250	Golgi SNAP receptor compl	yes	no	0.933	0.892	0.359	1e-36
Q2TBU3	250	Golgi SNAP receptor compl	yes	no	0.933	0.892	0.359	3e-36
Q5RBL6	248	Golgi SNAP receptor compl	yes	no	0.933	0.899	0.375	6e-36
O08522	250	Golgi SNAP receptor compl	yes	no	0.933	0.892	0.355	1e-35
Q62931	250	Golgi SNAP receptor compl	yes	no	0.933	0.892	0.355	1e-35
O95249	250	Golgi SNAP receptor compl	yes	no	0.941	0.9	0.352	2e-35
Q9LMP7	223	Golgi SNAP receptor compl	no	no	0.912	0.977	0.334	8e-30
Q95ZW1	234	Golgi SNAP receptor compl	yes	no	0.928	0.948	0.329	2e-26
A8XLW0	234	Golgi SNAP receptor compl	N/A	no	0.928	0.948	0.311	1e-25

>sp|O22151|GOS12_ARATH Golgi SNAP receptor complex member 1-2 OS=Arabidopsis thaliana GN=GOS12 PE=1 SV=2

 Score =  434 bits (1116), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 214/257 (83%), Positives = 229/257 (89%), Gaps = 18/257 (7%)

Query: 1   MTDPNLYLQESGWEELRKEARKIEGDLDVKLSSYAKLGARFTQG---------------- 44
           MT+ +L LQESGWEELR+EARKIEGDLDVKLSSYAKLGARFTQG                
Sbjct: 1   MTESSLDLQESGWEELRREARKIEGDLDVKLSSYAKLGARFTQGDTDLVMNYEKVLKCVL 60

Query: 45  --GYVDTGSPTVGSGRSWKSMEMEIQSLLEKLLDINDAMSRCAASAAPTTSVTQKLARHR 102
             GYVDTGSPTVGSGRSWKSMEMEIQSLLEKLLDIND+MSRCAASAAPTTSVTQKLARHR
Sbjct: 61  VSGYVDTGSPTVGSGRSWKSMEMEIQSLLEKLLDINDSMSRCAASAAPTTSVTQKLARHR 120

Query: 103 DILHEFTQEFRRIKGNINSMREHAELLSSVRDDISEYKASGSMSPRMQILRERAAIHGSI 162
           DILHE+TQEFRRIKGNINS+REHAELLSSVRDDISEYKASGSMSP +Q+LRERA+IHGSI
Sbjct: 121 DILHEYTQEFRRIKGNINSLREHAELLSSVRDDISEYKASGSMSPGVQVLRERASIHGSI 180

Query: 163 THIDDVISQAQTTRTVLGSQRALFGDVQGKVKVLSDKFPIIRGLLGSIRRRRSRDTLILA 222
           +HIDDVI QAQ TR VLGSQR+LF DVQGKVK L DKFP+IRGLLGSI+R+RSRDTLIL+
Sbjct: 181 SHIDDVIGQAQATRAVLGSQRSLFSDVQGKVKNLGDKFPVIRGLLGSIKRKRSRDTLILS 240

Query: 223 AVIAGCTLFLIIYWLSK 239
           AVIA CTLFLIIYWLSK
Sbjct: 241 AVIAACTLFLIIYWLSK 257

Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.
Arabidopsis thaliana (taxid: 3702)

>sp|O88630|GOSR1_MOUSE Golgi SNAP receptor complex member 1 OS=Mus musculus GN=Gosr1 PE=1 SV=2

 Score =  153 bits (386), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 86/239 (35%), Positives = 138/239 (57%), Gaps = 16/239 (6%)

Query: 13  WEELRKEARKIEGDLDVKLSSYAKLGARFTQGGYVDTG--------SPTVGSG---RSWK 61
           WE+LRK+AR++E +LD+KL S++KL   ++  G  D G        +P +      R ++
Sbjct: 9   WEDLRKQARQLENELDLKLVSFSKLCTSYSHSGSRDGGRDRYSSDTTPLLNGSSQDRMFE 68

Query: 62  SMEMEIQSLLEKLLDINDAMSRCAASAA-PT--TSVTQKLARHRDILHEFTQEFRRIKGN 118
           +M +EI+ LL +L  +ND M+    SA  P+   ++   L RHRDIL ++T EF + K N
Sbjct: 69  TMAIEIEQLLARLTGVNDKMAEYTHSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKAN 128

Query: 119 INSMREHAELLSSVRDDISEYKA-SGSMSPRMQI-LRERAAIHGSITHIDDVISQAQTTR 176
             ++RE   L+ SVR DI  YK+ SG  + R ++ L+E   +  S   I++ IS A  T+
Sbjct: 129 FTAIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAMATK 188

Query: 177 TVLGSQRALFGDVQGKVKVLSDKFPIIRGLLGSIRRRRSRDTLILAAVIAGCTLFLIIY 235
             + SQR +   +  K+  L+++FP +  L+  I  R+ RD+LIL  VI  CT+ L++Y
Sbjct: 189 ENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGICTILLLLY 247

Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor. May play a protective role against hydrogen peroxide induced cytotoxicity under glutathione depleted conditions in neuronal cells by regulating the intracellular ROS levels via inhibition of p38 MAPK (MAPK11, MAPK12, MAPK13 and MAPK14). Participates in docking and fusion stage of ER to cis-Golgi transport. Plays an important physiological role in VLDL-transport vesicle-Golgi fusion and thus in VLDL delivery to the hepatic cis-Golgi.

Mus musculus (taxid: 10090)

>sp|Q2TBU3|GOSR1_BOVIN Golgi SNAP receptor complex member 1 OS=Bos taurus GN=GOSR1 PE=2 SV=1

 Score =  152 bits (383), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 86/239 (35%), Positives = 138/239 (57%), Gaps = 16/239 (6%)

Query: 13  WEELRKEARKIEGDLDVKLSSYAKLGARFTQGG--------YVDTGSPTVGSG---RSWK 61
           WE+LRK+AR++E +LD+KL S++KL   ++           Y    +P +      R ++
Sbjct: 9   WEDLRKQARQLENELDLKLVSFSKLCTSYSHSSARDGRRDRYSSDTTPLLNGSSQDRMFE 68

Query: 62  SMEMEIQSLLEKLLDINDAMSRCAASAA-PT--TSVTQKLARHRDILHEFTQEFRRIKGN 118
           +M +EI+ LL +L  IND M+   +SA  P+   ++   L RHRDIL ++T EF + K N
Sbjct: 69  TMAIEIEQLLARLTGINDKMAEYTSSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKAN 128

Query: 119 INSMREHAELLSSVRDDISEYKA-SGSMSPRMQI-LRERAAIHGSITHIDDVISQAQTTR 176
             ++RE   L+ SVR DI  YK+ SG  + R ++ L+E   +  S   I++ IS A  T+
Sbjct: 129 FVAIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAMATK 188

Query: 177 TVLGSQRALFGDVQGKVKVLSDKFPIIRGLLGSIRRRRSRDTLILAAVIAGCTLFLIIY 235
             + SQR +   +Q K+  L+++FP +  L+  I  R+ RD+LIL  VI  CT+ L++Y
Sbjct: 189 ENMTSQRGMLKSIQSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGVCTILLLLY 247

Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor. May play a protective role against hydrogen peroxide induced cytotoxicity under glutathione depleted conditions in neuronal cells by regulating the intracellular ROS levels via inhibition of p38 MAPK (MAPK11, MAPK12, MAPK13 and MAPK14). Participates in docking and fusion stage of ER to cis-Golgi transport. Plays an important physiological role in VLDL-transport vesicle-Golgi fusion and thus in VLDL delivery to the hepatic cis-Golgi.

Bos taurus (taxid: 9913)

>sp|Q5RBL6|GOSR1_PONAB Golgi SNAP receptor complex member 1 OS=Pongo abelii GN=GOSR1 PE=2 SV=1

 Score =  150 bits (380), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 89/237 (37%), Positives = 139/237 (58%), Gaps = 14/237 (5%)

Query: 13  WEELRKEARKIEGDLDVKLSSYAKLGARF----TQGGYVDTGSPTV---GSG--RSWKSM 63
           WE+LRK+AR++E +LD+KL S++KL   +    T+ G  D+   T    GS   R +++M
Sbjct: 9   WEDLRKQARQLENELDLKLVSFSKLCTSYSHSSTRDGRRDSSDTTPLLNGSSQDRMFETM 68

Query: 64  EMEIQSLLEKLLDINDAMSRCAASAA-PT--TSVTQKLARHRDILHEFTQEFRRIKGNIN 120
            +EI+ LL +L  +ND M+    SA  P+   ++   L RHRDIL ++T EF + K N  
Sbjct: 69  AIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKANFM 128

Query: 121 SMREHAELLSSVRDDISEYKA-SGSMSPRMQI-LRERAAIHGSITHIDDVISQAQTTRTV 178
           S+RE   L+ SVR DI  YK+ SG  + R ++ L+E   +  S   I++ IS A  T+  
Sbjct: 129 SIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAMATKEN 188

Query: 179 LGSQRALFGDVQGKVKVLSDKFPIIRGLLGSIRRRRSRDTLILAAVIAGCTLFLIIY 235
           + SQR +   +  K+  L+++FP +  L+  I  R+ RD+LIL  VI  CT+ L++Y
Sbjct: 189 MTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGICTILLLLY 245

Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor. May play a protective role against hydrogen peroxide induced cytotoxicity under glutathione depleted conditions in neuronal cells by regulating the intracellular ROS levels via inhibition of p38 MAPK (MAPK11, MAPK12, MAPK13 and MAPK14). Participates in docking and fusion stage of ER to cis-Golgi transport. Plays an important physiological role in VLDL-transport vesicle-Golgi fusion and thus in VLDL delivery to the hepatic cis-Golgi.

Pongo abelii (taxid: 9601)

>sp|O08522|GOSR1_CRIGR Golgi SNAP receptor complex member 1 OS=Cricetulus griseus GN=GOSR1 PE=1 SV=1

 Score =  150 bits (378), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 85/239 (35%), Positives = 137/239 (57%), Gaps = 16/239 (6%)

Query: 13  WEELRKEARKIEGDLDVKLSSYAKLGARFTQGGYVDTG--------SPTVGSG---RSWK 61
           WE+LRK+AR++E +LD+KL S++KL   ++     D G        +P +      R ++
Sbjct: 9   WEDLRKQARQLENELDLKLVSFSKLCTSYSHSSARDGGRDRYSSDTTPLLNGSSQDRMFE 68

Query: 62  SMEMEIQSLLEKLLDINDAMSRCAASAA-PT--TSVTQKLARHRDILHEFTQEFRRIKGN 118
           +M +EI+ LL +L  +ND M+    SA  P+   ++   L RHRDIL ++T EF + K N
Sbjct: 69  TMAIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKAN 128

Query: 119 INSMREHAELLSSVRDDISEYKA-SGSMSPRMQI-LRERAAIHGSITHIDDVISQAQTTR 176
             ++RE   L+ SVR DI  YK+ SG  + R ++ L+E   +  S   I++ IS A  T+
Sbjct: 129 FMAIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAMATK 188

Query: 177 TVLGSQRALFGDVQGKVKVLSDKFPIIRGLLGSIRRRRSRDTLILAAVIAGCTLFLIIY 235
             + SQR +   +  K+  L+++FP +  L+  I  R+ RD+LIL  VI  CT+ L++Y
Sbjct: 189 ENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGICTILLLLY 247

Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor. May play a protective role against hydrogen peroxide induced cytotoxicity under glutathione depleted conditions in neuronal cells by regulating the intracellular ROS levels via inhibition of p38 MAPK (MAPK11, MAPK12, MAPK13 and MAPK14). Participates in docking and fusion stage of ER to cis-Golgi transport. Plays an important physiological role in VLDL-transport vesicle-Golgi fusion and thus in VLDL delivery to the hepatic cis-Golgi.

Cricetulus griseus (taxid: 10029)

>sp|Q62931|GOSR1_RAT Golgi SNAP receptor complex member 1 OS=Rattus norvegicus GN=Gosr1 PE=1 SV=1

 Score =  149 bits (377), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 85/239 (35%), Positives = 137/239 (57%), Gaps = 16/239 (6%)

Query: 13  WEELRKEARKIEGDLDVKLSSYAKLGARFTQGGYVDTG--------SPTVGSG---RSWK 61
           WE+LRK+AR++E +LD+KL S++KL   ++     D G        +P +      R ++
Sbjct: 9   WEDLRKQARQLENELDLKLVSFSKLCTSYSHSSARDGGRDRYSSDTTPLLNGSSQDRMFE 68

Query: 62  SMEMEIQSLLEKLLDINDAMSRCAASAA-PT--TSVTQKLARHRDILHEFTQEFRRIKGN 118
           +M +EI+ LL +L  +ND M+    SA  P+   ++   L RHRDIL ++T EF + K N
Sbjct: 69  TMAIEIEQLLARLTGVNDKMAEYTHSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKAN 128

Query: 119 INSMREHAELLSSVRDDISEYKA-SGSMSPRMQI-LRERAAIHGSITHIDDVISQAQTTR 176
             ++RE   L+ SVR DI  YK+ SG  + R ++ L+E   +  S   I++ IS A  T+
Sbjct: 129 FMAIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAMATK 188

Query: 177 TVLGSQRALFGDVQGKVKVLSDKFPIIRGLLGSIRRRRSRDTLILAAVIAGCTLFLIIY 235
             + SQR +   +  K+  L+++FP +  L+  I  R+ RD+LIL  VI  CT+ L++Y
Sbjct: 189 ENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGICTILLLLY 247

Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor. May play a protective role against hydrogen peroxide induced cytotoxicity under glutathione depleted conditions in neuronal cells by regulating the intracellular ROS levels via inhibition of p38 MAPK (MAPK11, MAPK12, MAPK13 and MAPK14). Participates in docking and fusion stage of ER to cis-Golgi transport. Plays an important physiological role in VLDL-transport vesicle-Golgi fusion and thus in VLDL delivery to the hepatic cis-Golgi.

Rattus norvegicus (taxid: 10116)

>sp|O95249|GOSR1_HUMAN Golgi SNAP receptor complex member 1 OS=Homo sapiens GN=GOSR1 PE=1 SV=1

 Score =  149 bits (376), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 85/241 (35%), Positives = 137/241 (56%), Gaps = 16/241 (6%)

Query: 11  SGWEELRKEARKIEGDLDVKLSSYAKLGARFTQGG--------YVDTGSPTVGSG---RS 59
           S WE+LRK+AR++E +LD+KL S++KL   ++           Y    +P +      R 
Sbjct: 7   SYWEDLRKQARQLENELDLKLVSFSKLCTSYSHSSTRDGRRDRYSSDTTPLLNGSSQDRM 66

Query: 60  WKSMEMEIQSLLEKLLDINDAMSRCAASAA-PT--TSVTQKLARHRDILHEFTQEFRRIK 116
           +++M +EI+ LL +L  +ND M+    SA  P+   ++   L RHRDIL ++T EF + K
Sbjct: 67  FETMAIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTK 126

Query: 117 GNINSMREHAELLSSVRDDISEYKA-SGSMSPRMQI-LRERAAIHGSITHIDDVISQAQT 174
            N  ++RE   L+ SVR DI  YK+ SG  + R ++ L+E   +  S   I++ IS A  
Sbjct: 127 ANFMAIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAMA 186

Query: 175 TRTVLGSQRALFGDVQGKVKVLSDKFPIIRGLLGSIRRRRSRDTLILAAVIAGCTLFLII 234
           T+  + SQR +   +  K+  L+++FP +  L+  I  R+ RD+LIL  VI  CT+ L++
Sbjct: 187 TKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGICTILLLL 246

Query: 235 Y 235
           Y
Sbjct: 247 Y 247

Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor. May play a protective role against hydrogen peroxide induced cytotoxicity under glutathione depleted conditions in neuronal cells by regulating the intracellular ROS levels via inhibition of p38 MAPK (MAPK11, MAPK12, MAPK13 and MAPK14). Participates in docking and fusion stage of ER to cis-Golgi transport. Plays an important physiological role in VLDL-transport vesicle-Golgi fusion and thus in VLDL delivery to the hepatic cis-Golgi.

Homo sapiens (taxid: 9606)

>sp|Q9LMP7|GOS11_ARATH Golgi SNAP receptor complex member 1-1 OS=Arabidopsis thaliana GN=GOS11 PE=2 SV=1

 Score =  130 bits (327), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 77/230 (33%), Positives = 124/230 (53%), Gaps = 12/230 (5%)

Query: 11  SGWEELRKEARKIEGDLDVKLSSYAKLGARFTQGGYVDTGSPTVGSGRSWKSMEMEIQSL 70
           S W+ LRK+ARKIE  LD ++ SY +L         V T + +   G     +E  I  L
Sbjct: 5   SSWDALRKQARKIEAQLDEQMHSYRRL---------VSTKALSKSDGNE-SDLEAGIDLL 54

Query: 71  LEKLLDINDAMSRCAASAAPTTSVTQKLARHRDILHEFTQEFRRIKGNINSMREHAELLS 130
           L +L  +N  M +   S+  +  V+  L RH++IL + TQEF R + ++ + +EHA LL 
Sbjct: 55  LRQLQQVNAQM-QAWVSSGGSEMVSHTLTRHQEILQDLTQEFYRHRSSLRAKQEHASLLE 113

Query: 131 SVRD-DISEYKASGSMSPRMQILRERAAIHGSITHIDDVISQAQTTRTVLGSQRALFGDV 189
             R+ D +             +++E   I+ +   +D VISQAQ T   L  QR+ FG +
Sbjct: 114 DFREFDRTRLDLEDGYGSEQALIKEHMGINRNTAQMDGVISQAQATLGTLVFQRSTFGGI 173

Query: 190 QGKVKVLSDKFPIIRGLLGSIRRRRSRDTLILAAVIAGCTLFLIIYWLSK 239
             K+  ++ + P +  +L +I+R++S DT+IL+ V A CT  + IYW++K
Sbjct: 174 NSKLSNVASRLPTVNTILAAIKRKKSMDTIILSLVAAVCTFLIFIYWITK 223

Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q95ZW1|GOSR1_CAEEL Golgi SNAP receptor complex member 1 OS=Caenorhabditis elegans GN=gos-28 PE=2 SV=1

 Score =  119 bits (298), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/231 (32%), Positives = 127/231 (54%), Gaps = 9/231 (3%)

Query: 13  WEELRKEARKIEGDLDVKLSSYAKLGARFTQGGYVDTGSPTVGSGR-SWKSMEMEIQSLL 71
           WE LRK+AR  E  +DVKL S  KL A  + GG+ D    TV S + S+K++  EI+ L+
Sbjct: 5   WEALRKKARSTENSIDVKLVSLNKLTAS-SHGGF-DIDEKTVSSRQTSFKTVTTEIEGLI 62

Query: 72  EKLLDINDAMSRCA-----ASAAPTTSVTQKLARHRDILHEFTQEFRRIKGNINSMREHA 126
           E+L +IND M+  A     AS A   ++   L RHR+IL ++  E+RR + N++ + +  
Sbjct: 63  EQLTNINDDMNDVAGAQSSASWANNPAIQHTLRRHREILRDYGSEYRRARDNVDQVLQRE 122

Query: 127 ELLSSVRDDISEYKASGSMSPRMQILRERAAIHGSITHIDDVISQAQTTRTVLGSQRALF 186
            LLSS  ++ +    +         L+E   I+     +D+ +  A +T+  +  Q    
Sbjct: 123 LLLSSSNENRNNPILNNRARGYDMYLKENDHINACDRLLDEQLEMAMSTKENMARQGINL 182

Query: 187 GDVQGKVKVLSDKFPIIRGLLGSIRRRRSRDTLILAAVIAGCTLFLIIYWL 237
             +  ++  +S K+P I  L+  I+ ++ ++TLILAAVI+ C +F  I+W+
Sbjct: 183 RGISTRLHHISKKYPAINNLMQKIKTKKQKNTLILAAVISSCLIF-TIFWI 232

Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor. Cooperates with ykt-6 for proper expression of Golgi-resident proteins. Required along with ykt-6 for normal embryonic development, seam cell division or differentiation, and ray formation.

Caenorhabditis elegans (taxid: 6239)

>sp|A8XLW0|GOSR1_CAEBR Golgi SNAP receptor complex member 1 OS=Caenorhabditis briggsae GN=gos-28 PE=3 SV=1

 Score =  116 bits (291), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/231 (31%), Positives = 125/231 (54%), Gaps = 9/231 (3%)

Query: 13  WEELRKEARKIEGDLDVKLSSYAKLGARFTQGGYVDTGSPTVGSGRS-WKSMEMEIQSLL 71
           WE LRK+AR  E  +DVKL S  KL A  + GG+ D    TV S ++ ++++  EI+ L+
Sbjct: 5   WEALRKKARSTENSIDVKLVSLNKLTAS-SHGGF-DIDEKTVSSRQTTFRTVTTEIEGLI 62

Query: 72  EKLLDINDAMSRCA-----ASAAPTTSVTQKLARHRDILHEFTQEFRRIKGNINSMREHA 126
           E+L +IND M+  A     AS A   ++   L RHR+IL ++  E+RR + N++ + +  
Sbjct: 63  EQLTNINDDMNDVAGAQSSASWASNPAIQHTLRRHREILRDYGSEYRRARDNVDQVLQRE 122

Query: 127 ELLSSVRDDISEYKASGSMSPRMQILRERAAIHGSITHIDDVISQAQTTRTVLGSQRALF 186
            LLSS  ++      +         L+E   I+     +D+ I  A +T+  +  Q    
Sbjct: 123 LLLSSSNNESRNPAVNNRARGYDMYLKENDHINACDRLLDEQIEMAMSTKENVARQGINL 182

Query: 187 GDVQGKVKVLSDKFPIIRGLLGSIRRRRSRDTLILAAVIAGCTLFLIIYWL 237
             +  ++  ++ K+P I  L+  I+ ++ ++T+ILA VI+ C +F  I+W+
Sbjct: 183 RGISNRLHYITKKYPAINNLMQKIKTKKQKNTMILAGVISACLIF-TIFWI 232

Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor. Cooperates with ykt-6 for proper expression of Golgi-resident proteins. Required along with ykt-6 for normal embryonic development, seam cell division or differentiation, and ray formation.

Caenorhabditis briggsae (taxid: 6238)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	239
225453977	239	PREDICTED: Golgi SNARE 12 protein [Vitis	1.0	1.0	0.933	1e-127
296089182	238	unnamed protein product [Vitis vinifera]	0.991	0.995	0.936	1e-126
388502130	239	unknown [Lotus japonicus]	1.0	1.0	0.903	1e-123
15225431	239	Golgi SNARE 12 protein [Arabidopsis thal	1.0	1.0	0.895	1e-123
297828237	239	hypothetical protein ARALYDRAFT_903960 [	1.0	1.0	0.895	1e-122
224129958	243	predicted protein [Populus trichocarpa]	1.0	0.983	0.901	1e-122
449480871	241	PREDICTED: Golgi SNAP receptor complex m	1.0	0.991	0.870	1e-121
334184915	257	Golgi SNARE 12 protein [Arabidopsis thal	1.0	0.929	0.832	1e-119
363814447	241	uncharacterized protein LOC100781813 [Gl	1.0	0.991	0.879	1e-119
217073318	240	unknown [Medicago truncatula]	0.983	0.979	0.885	1e-119

>gi|225453977|ref|XP_002280376.1| PREDICTED: Golgi SNARE 12 protein [Vitis vinifera]

 Score =  460 bits (1183), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 223/239 (93%), Positives = 228/239 (95%)

Query: 1   MTDPNLYLQESGWEELRKEARKIEGDLDVKLSSYAKLGARFTQGGYVDTGSPTVGSGRSW 60
           M DPNL LQESGWEELRKEARKIEGDLDVKLSSYAKLGARFTQGGYVDTGSPTV S RSW
Sbjct: 1   MMDPNLDLQESGWEELRKEARKIEGDLDVKLSSYAKLGARFTQGGYVDTGSPTVSSSRSW 60

Query: 61  KSMEMEIQSLLEKLLDINDAMSRCAASAAPTTSVTQKLARHRDILHEFTQEFRRIKGNIN 120
           KSMEMEIQSLLEKLLD NDAMSRCAASAAPTTSVTQKLARHRDILHEFTQEFRRIKGN+N
Sbjct: 61  KSMEMEIQSLLEKLLDTNDAMSRCAASAAPTTSVTQKLARHRDILHEFTQEFRRIKGNMN 120

Query: 121 SMREHAELLSSVRDDISEYKASGSMSPRMQILRERAAIHGSITHIDDVISQAQTTRTVLG 180
           SMREHAELLSSVRDDISEYKASGSMSPRMQ+LRERAAIHGSI+HIDDVISQAQTTR  L 
Sbjct: 121 SMREHAELLSSVRDDISEYKASGSMSPRMQLLRERAAIHGSISHIDDVISQAQTTRAALN 180

Query: 181 SQRALFGDVQGKVKVLSDKFPIIRGLLGSIRRRRSRDTLILAAVIAGCTLFLIIYWLSK 239
           SQR LFGD QGKVK+LSDKFPIIRGLLGSIRRRRSRDTLIL+AVIA CTLFLIIYWLSK
Sbjct: 181 SQRTLFGDFQGKVKLLSDKFPIIRGLLGSIRRRRSRDTLILSAVIAACTLFLIIYWLSK 239

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089182|emb|CBI38885.3| unnamed protein product [Vitis vinifera]

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 222/237 (93%), Positives = 227/237 (95%)

Query: 3   DPNLYLQESGWEELRKEARKIEGDLDVKLSSYAKLGARFTQGGYVDTGSPTVGSGRSWKS 62
           DPNL LQESGWEELRKEARKIEGDLDVKLSSYAKLGARFTQGGYVDTGSPTV S RSWKS
Sbjct: 2   DPNLDLQESGWEELRKEARKIEGDLDVKLSSYAKLGARFTQGGYVDTGSPTVSSSRSWKS 61

Query: 63  MEMEIQSLLEKLLDINDAMSRCAASAAPTTSVTQKLARHRDILHEFTQEFRRIKGNINSM 122
           MEMEIQSLLEKLLD NDAMSRCAASAAPTTSVTQKLARHRDILHEFTQEFRRIKGN+NSM
Sbjct: 62  MEMEIQSLLEKLLDTNDAMSRCAASAAPTTSVTQKLARHRDILHEFTQEFRRIKGNMNSM 121

Query: 123 REHAELLSSVRDDISEYKASGSMSPRMQILRERAAIHGSITHIDDVISQAQTTRTVLGSQ 182
           REHAELLSSVRDDISEYKASGSMSPRMQ+LRERAAIHGSI+HIDDVISQAQTTR  L SQ
Sbjct: 122 REHAELLSSVRDDISEYKASGSMSPRMQLLRERAAIHGSISHIDDVISQAQTTRAALNSQ 181

Query: 183 RALFGDVQGKVKVLSDKFPIIRGLLGSIRRRRSRDTLILAAVIAGCTLFLIIYWLSK 239
           R LFGD QGKVK+LSDKFPIIRGLLGSIRRRRSRDTLIL+AVIA CTLFLIIYWLSK
Sbjct: 182 RTLFGDFQGKVKLLSDKFPIIRGLLGSIRRRRSRDTLILSAVIAACTLFLIIYWLSK 238

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388502130|gb|AFK39131.1| unknown [Lotus japonicus]

 Score =  446 bits (1146), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 216/239 (90%), Positives = 226/239 (94%)

Query: 1   MTDPNLYLQESGWEELRKEARKIEGDLDVKLSSYAKLGARFTQGGYVDTGSPTVGSGRSW 60
           M D NL LQESGWEELRKEARKIEGDLDVKLSSYAKLGARFTQGGYVD GSP +GS RSW
Sbjct: 1   MRDSNLELQESGWEELRKEARKIEGDLDVKLSSYAKLGARFTQGGYVDGGSPPLGSSRSW 60

Query: 61  KSMEMEIQSLLEKLLDINDAMSRCAASAAPTTSVTQKLARHRDILHEFTQEFRRIKGNIN 120
           KSMEMEIQSLLEKLLDIND+MSRCAASA P TSVTQKLARHRDILHEFTQEFRRIKGNIN
Sbjct: 61  KSMEMEIQSLLEKLLDINDSMSRCAASAGPATSVTQKLARHRDILHEFTQEFRRIKGNIN 120

Query: 121 SMREHAELLSSVRDDISEYKASGSMSPRMQILRERAAIHGSITHIDDVISQAQTTRTVLG 180
           SMREHAELL+SVRDDIS++K SGSMSPRMQ+LRERAAIHGSI+HIDDVISQAQ TR+VLG
Sbjct: 121 SMREHAELLTSVRDDISDFKTSGSMSPRMQLLRERAAIHGSISHIDDVISQAQATRSVLG 180

Query: 181 SQRALFGDVQGKVKVLSDKFPIIRGLLGSIRRRRSRDTLILAAVIAGCTLFLIIYWLSK 239
           SQRALFGDVQGKVKVL DKFPIIR LLGSIRR+RSRDTLIL+AVIA CTLFLIIYWLSK
Sbjct: 181 SQRALFGDVQGKVKVLGDKFPIIRSLLGSIRRKRSRDTLILSAVIAACTLFLIIYWLSK 239

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15225431|ref|NP_182045.1| Golgi SNARE 12 protein [Arabidopsis thaliana] gi|13898895|gb|AAK48905.1|AF357529_1 Golgi SNARE 12 protein [Arabidopsis thaliana] gi|2583133|gb|AAB82642.1| putative cis-Golgi SNARE protein [Arabidopsis thaliana] gi|88196757|gb|ABD43021.1| At2g45200 [Arabidopsis thaliana] gi|330255430|gb|AEC10524.1| Golgi SNARE 12 protein [Arabidopsis thaliana]

 Score =  445 bits (1144), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 214/239 (89%), Positives = 229/239 (95%)

Query: 1   MTDPNLYLQESGWEELRKEARKIEGDLDVKLSSYAKLGARFTQGGYVDTGSPTVGSGRSW 60
           MT+ +L LQESGWEELR+EARKIEGDLDVKLSSYAKLGARFTQGGYVDTGSPTVGSGRSW
Sbjct: 1   MTESSLDLQESGWEELRREARKIEGDLDVKLSSYAKLGARFTQGGYVDTGSPTVGSGRSW 60

Query: 61  KSMEMEIQSLLEKLLDINDAMSRCAASAAPTTSVTQKLARHRDILHEFTQEFRRIKGNIN 120
           KSMEMEIQSLLEKLLDIND+MSRCAASAAPTTSVTQKLARHRDILHE+TQEFRRIKGNIN
Sbjct: 61  KSMEMEIQSLLEKLLDINDSMSRCAASAAPTTSVTQKLARHRDILHEYTQEFRRIKGNIN 120

Query: 121 SMREHAELLSSVRDDISEYKASGSMSPRMQILRERAAIHGSITHIDDVISQAQTTRTVLG 180
           S+REHAELLSSVRDDISEYKASGSMSP +Q+LRERA+IHGSI+HIDDVI QAQ TR VLG
Sbjct: 121 SLREHAELLSSVRDDISEYKASGSMSPGVQVLRERASIHGSISHIDDVIGQAQATRAVLG 180

Query: 181 SQRALFGDVQGKVKVLSDKFPIIRGLLGSIRRRRSRDTLILAAVIAGCTLFLIIYWLSK 239
           SQR+LF DVQGKVK L DKFP+IRGLLGSI+R+RSRDTLIL+AVIA CTLFLIIYWLSK
Sbjct: 181 SQRSLFSDVQGKVKNLGDKFPVIRGLLGSIKRKRSRDTLILSAVIAACTLFLIIYWLSK 239

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297828237|ref|XP_002882001.1| hypothetical protein ARALYDRAFT_903960 [Arabidopsis lyrata subsp. lyrata] gi|297327840|gb|EFH58260.1| hypothetical protein ARALYDRAFT_903960 [Arabidopsis lyrata subsp. lyrata]

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 214/239 (89%), Positives = 228/239 (95%)

Query: 1   MTDPNLYLQESGWEELRKEARKIEGDLDVKLSSYAKLGARFTQGGYVDTGSPTVGSGRSW 60
           MT+ +L LQESGWEELR+EARKIEGDLDVKLSSYAKLGARFTQGGYVD GSPTVGSGRSW
Sbjct: 1   MTESSLDLQESGWEELRREARKIEGDLDVKLSSYAKLGARFTQGGYVDAGSPTVGSGRSW 60

Query: 61  KSMEMEIQSLLEKLLDINDAMSRCAASAAPTTSVTQKLARHRDILHEFTQEFRRIKGNIN 120
           KSMEMEIQSLLEKLLDIND+MSRCAASAAPTTSVTQKLARHRDILHE+TQEFRRIKGNIN
Sbjct: 61  KSMEMEIQSLLEKLLDINDSMSRCAASAAPTTSVTQKLARHRDILHEYTQEFRRIKGNIN 120

Query: 121 SMREHAELLSSVRDDISEYKASGSMSPRMQILRERAAIHGSITHIDDVISQAQTTRTVLG 180
           SMREHAELLSSVRDDISEYKASGSMSP +Q+LRERA+IHGSI+HIDDVI QAQ TR VLG
Sbjct: 121 SMREHAELLSSVRDDISEYKASGSMSPGVQVLRERASIHGSISHIDDVIGQAQATRAVLG 180

Query: 181 SQRALFGDVQGKVKVLSDKFPIIRGLLGSIRRRRSRDTLILAAVIAGCTLFLIIYWLSK 239
           SQR+LF DVQGKVK L DKFP+IRGLLGSI+R+RSRDTLIL+AVIA CTLFLIIYWLSK
Sbjct: 181 SQRSLFSDVQGKVKNLGDKFPVIRGLLGSIKRKRSRDTLILSAVIAACTLFLIIYWLSK 239

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224129958|ref|XP_002320713.1| predicted protein [Populus trichocarpa] gi|222861486|gb|EEE99028.1| predicted protein [Populus trichocarpa]

 Score =  442 bits (1137), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 219/243 (90%), Positives = 230/243 (94%), Gaps = 4/243 (1%)

Query: 1   MTDPNLYLQESGWEELRKEARKIEGDLDVKLSSYAKLGARFTQGG----YVDTGSPTVGS 56
           MTD NL LQESGWEELR+EARKIEGDLDVKLSSYAKLG+RFTQGG    YV+TGSPTVGS
Sbjct: 1   MTDTNLELQESGWEELRREARKIEGDLDVKLSSYAKLGSRFTQGGGGGGYVETGSPTVGS 60

Query: 57  GRSWKSMEMEIQSLLEKLLDINDAMSRCAASAAPTTSVTQKLARHRDILHEFTQEFRRIK 116
            RSWKSMEMEIQS LEKLLDINDAMSRCAASAAP TSVTQKLARHRDILH+FTQEFRRIK
Sbjct: 61  SRSWKSMEMEIQSSLEKLLDINDAMSRCAASAAPATSVTQKLARHRDILHDFTQEFRRIK 120

Query: 117 GNINSMREHAELLSSVRDDISEYKASGSMSPRMQILRERAAIHGSITHIDDVISQAQTTR 176
           GNINSMREH+ELLSSVRDDISEYKASGSMSPR+Q+LRERAAIHGSI+HIDDVI+QAQTTR
Sbjct: 121 GNINSMREHSELLSSVRDDISEYKASGSMSPRVQLLRERAAIHGSISHIDDVINQAQTTR 180

Query: 177 TVLGSQRALFGDVQGKVKVLSDKFPIIRGLLGSIRRRRSRDTLILAAVIAGCTLFLIIYW 236
            VLGSQRA FGDVQGKVK+L DKFPIIRGLLGSIRRRRSRDTLIL+AVIA CTLFLIIYW
Sbjct: 181 AVLGSQRAFFGDVQGKVKLLGDKFPIIRGLLGSIRRRRSRDTLILSAVIAACTLFLIIYW 240

Query: 237 LSK 239
           LSK
Sbjct: 241 LSK 243

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449480871|ref|XP_004156018.1| PREDICTED: Golgi SNAP receptor complex member 1-2-like isoform 1 [Cucumis sativus]

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 208/239 (87%), Positives = 227/239 (94%)

Query: 1   MTDPNLYLQESGWEELRKEARKIEGDLDVKLSSYAKLGARFTQGGYVDTGSPTVGSGRSW 60
           MTD +L LQESGWEELR+EARKIEGDLDVKLSSYAKLG RFTQGGYVD+GSP+VGS RSW
Sbjct: 3   MTDQSLELQESGWEELRREARKIEGDLDVKLSSYAKLGTRFTQGGYVDSGSPSVGSNRSW 62

Query: 61  KSMEMEIQSLLEKLLDINDAMSRCAASAAPTTSVTQKLARHRDILHEFTQEFRRIKGNIN 120
           KSMEMEIQSLLEKLLD+ND+MSRCAASA P TS+ QKLARHRDILHEFTQEF+RIKGNIN
Sbjct: 63  KSMEMEIQSLLEKLLDVNDSMSRCAASATPATSINQKLARHRDILHEFTQEFKRIKGNIN 122

Query: 121 SMREHAELLSSVRDDISEYKASGSMSPRMQILRERAAIHGSITHIDDVISQAQTTRTVLG 180
           SMREHAELLSSVRDDI+EYK+ G+MSPR+Q+LRERAAIHGSI H+D+VISQAQTTR VLG
Sbjct: 123 SMREHAELLSSVRDDINEYKSPGTMSPRVQLLRERAAIHGSIAHMDEVISQAQTTRAVLG 182

Query: 181 SQRALFGDVQGKVKVLSDKFPIIRGLLGSIRRRRSRDTLILAAVIAGCTLFLIIYWLSK 239
           +QRALFGDVQGKVKVLSDKFP+IRGLLGSIRRRRSRDT+IL+ VIA CTLFLIIYWLSK
Sbjct: 183 NQRALFGDVQGKVKVLSDKFPVIRGLLGSIRRRRSRDTIILSGVIAACTLFLIIYWLSK 241

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334184915|ref|NP_001189748.1| Golgi SNARE 12 protein [Arabidopsis thaliana] gi|378405178|sp|O22151.2|GOS12_ARATH RecName: Full=Golgi SNAP receptor complex member 1-2; AltName: Full=Golgi SNARE 12 protein; Short=AtGOS12 gi|330255431|gb|AEC10525.1| Golgi SNARE 12 protein [Arabidopsis thaliana]

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 214/257 (83%), Positives = 229/257 (89%), Gaps = 18/257 (7%)

Query: 1   MTDPNLYLQESGWEELRKEARKIEGDLDVKLSSYAKLGARFTQG---------------- 44
           MT+ +L LQESGWEELR+EARKIEGDLDVKLSSYAKLGARFTQG                
Sbjct: 1   MTESSLDLQESGWEELRREARKIEGDLDVKLSSYAKLGARFTQGDTDLVMNYEKVLKCVL 60

Query: 45  --GYVDTGSPTVGSGRSWKSMEMEIQSLLEKLLDINDAMSRCAASAAPTTSVTQKLARHR 102
             GYVDTGSPTVGSGRSWKSMEMEIQSLLEKLLDIND+MSRCAASAAPTTSVTQKLARHR
Sbjct: 61  VSGYVDTGSPTVGSGRSWKSMEMEIQSLLEKLLDINDSMSRCAASAAPTTSVTQKLARHR 120

Query: 103 DILHEFTQEFRRIKGNINSMREHAELLSSVRDDISEYKASGSMSPRMQILRERAAIHGSI 162
           DILHE+TQEFRRIKGNINS+REHAELLSSVRDDISEYKASGSMSP +Q+LRERA+IHGSI
Sbjct: 121 DILHEYTQEFRRIKGNINSLREHAELLSSVRDDISEYKASGSMSPGVQVLRERASIHGSI 180

Query: 163 THIDDVISQAQTTRTVLGSQRALFGDVQGKVKVLSDKFPIIRGLLGSIRRRRSRDTLILA 222
           +HIDDVI QAQ TR VLGSQR+LF DVQGKVK L DKFP+IRGLLGSI+R+RSRDTLIL+
Sbjct: 181 SHIDDVIGQAQATRAVLGSQRSLFSDVQGKVKNLGDKFPVIRGLLGSIKRKRSRDTLILS 240

Query: 223 AVIAGCTLFLIIYWLSK 239
           AVIA CTLFLIIYWLSK
Sbjct: 241 AVIAACTLFLIIYWLSK 257

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363814447|ref|NP_001242858.1| uncharacterized protein LOC100781813 [Glycine max] gi|255646986|gb|ACU23962.1| unknown [Glycine max]

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 212/241 (87%), Positives = 222/241 (92%), Gaps = 2/241 (0%)

Query: 1   MTDPNLYLQESGWEELRKEARKIEGDLDVKLSSYAKLGARFTQGG--YVDTGSPTVGSGR 58
           M DPNL LQESGWEELRKEARKIEGDLDVKLSSYAKLGARFTQGG  YVD+GSP +GS R
Sbjct: 1   MRDPNLELQESGWEELRKEARKIEGDLDVKLSSYAKLGARFTQGGSGYVDSGSPPIGSSR 60

Query: 59  SWKSMEMEIQSLLEKLLDINDAMSRCAASAAPTTSVTQKLARHRDILHEFTQEFRRIKGN 118
           SWKSMEMEIQSLLEKLLDIND+MSRCAASA P TSVTQKLARHRD LHEFTQEFRRIKGN
Sbjct: 61  SWKSMEMEIQSLLEKLLDINDSMSRCAASAGPATSVTQKLARHRDNLHEFTQEFRRIKGN 120

Query: 119 INSMREHAELLSSVRDDISEYKASGSMSPRMQILRERAAIHGSITHIDDVISQAQTTRTV 178
           INSMREHAELLSSVRDDI+++K SGSMSPRMQ+LRERAAIH SI+HIDDVISQAQ TR V
Sbjct: 121 INSMREHAELLSSVRDDITDFKTSGSMSPRMQLLRERAAIHESISHIDDVISQAQATRAV 180

Query: 179 LGSQRALFGDVQGKVKVLSDKFPIIRGLLGSIRRRRSRDTLILAAVIAGCTLFLIIYWLS 238
           LG QR LF DVQGKVKVL DKFP+IR LLGSIRRRRSRDTLIL+AVIA CTLFLIIYWLS
Sbjct: 181 LGFQRTLFTDVQGKVKVLGDKFPMIRSLLGSIRRRRSRDTLILSAVIAACTLFLIIYWLS 240

Query: 239 K 239
           K
Sbjct: 241 K 241

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217073318|gb|ACJ85018.1| unknown [Medicago truncatula]

 Score =  432 bits (1110), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 208/235 (88%), Positives = 221/235 (94%)

Query: 5   NLYLQESGWEELRKEARKIEGDLDVKLSSYAKLGARFTQGGYVDTGSPTVGSGRSWKSME 64
           NL LQESGWEELRKEARKIEGDLDVKLSSYAKLGARFTQGGYV+ GSP+VGS RSWKSME
Sbjct: 6   NLDLQESGWEELRKEARKIEGDLDVKLSSYAKLGARFTQGGYVEGGSPSVGSSRSWKSME 65

Query: 65  MEIQSLLEKLLDINDAMSRCAASAAPTTSVTQKLARHRDILHEFTQEFRRIKGNINSMRE 124
           ME QSLLEKLLDIND+MSRCAASA P TSVTQKLARHRDILHEFTQEFRR KGNINSM+E
Sbjct: 66  METQSLLEKLLDINDSMSRCAASAGPATSVTQKLARHRDILHEFTQEFRRTKGNINSMKE 125

Query: 125 HAELLSSVRDDISEYKASGSMSPRMQILRERAAIHGSITHIDDVISQAQTTRTVLGSQRA 184
           HAELL SVRDDIS++KASGSMSPRMQ+LRERAAIHGS +HID+VISQAQ TR VLGSQRA
Sbjct: 126 HAELLGSVRDDISDFKASGSMSPRMQLLRERAAIHGSTSHIDEVISQAQATRAVLGSQRA 185

Query: 185 LFGDVQGKVKVLSDKFPIIRGLLGSIRRRRSRDTLILAAVIAGCTLFLIIYWLSK 239
           LFGDVQGKV++L DKFPIIR LLGSIRRR+SRDTLIL+AVIA CTLFLIIYWLSK
Sbjct: 186 LFGDVQGKVRLLGDKFPIIRSLLGSIRRRKSRDTLILSAVIAACTLFLIIYWLSK 240

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	239
UNIPROTKB|E2R812	250	GOSR1 "Golgi SNAP receptor com	0.933	0.892	0.351	1.6e-31
MGI|MGI:1858260	250	Gosr1 "golgi SNAP receptor com	0.933	0.892	0.351	2e-31
UNIPROTKB|Q2TBU3	250	GOSR1 "Golgi SNAP receptor com	0.933	0.892	0.351	3.3e-31
UNIPROTKB|E9PCW1	248	GOSR1 "Golgi SNAP receptor com	0.941	0.907	0.355	3.3e-31
UNIPROTKB|K7GKB9	248	LOC100517676 "Golgi SNAP recep	0.933	0.899	0.350	5.4e-31
ZFIN|ZDB-GENE-050417-133	250	gosr1 "golgi SNAP receptor com	0.924	0.884	0.357	6.9e-31
UNIPROTKB|O08522	250	GOSR1 "Golgi SNAP receptor com	0.933	0.892	0.351	8.8e-31
RGD|71093	250	Gosr1 "golgi SNAP receptor com	0.933	0.892	0.351	8.8e-31
UNIPROTKB|O95249	250	GOSR1 "Golgi SNAP receptor com	0.941	0.9	0.352	1.1e-30
UNIPROTKB|F1RN67	250	LOC100517676 "Uncharacterized	0.933	0.892	0.343	1.4e-30

UNIPROTKB|E2R812 GOSR1 "Golgi SNAP receptor complex member 1" [Canis lupus familiaris (taxid:9615)]

 Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
 Identities = 84/239 (35%), Positives = 133/239 (55%)

Query:    13 WEELRKEARKIEGDLDVKLSSYAKLGARFTQGG--------YVDTGSPTV-GSG--RSWK 61
             WE+LRK+AR++E +LD+KL S++KL   ++  G        Y    +P + GS   R ++
Sbjct:     9 WEDLRKQARQLENELDLKLVSFSKLCTSYSHSGARDGRRDRYSSDTTPLLNGSSQDRMFE 68

Query:    62 SMEMEIQSLLEKLLDINDAMSRCAASAA-PT--TSVTQKLARHRDILHEFTQEFRRIKGN 118
             +M +EI+ LL +L  +ND M+    SA  P+   ++   L RHRDIL ++T EF + K N
Sbjct:    69 TMAIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKAN 128

Query:   119 INSMREHAELLSSVRDDISEYKA-SGSMSPRMQI-LRERAAIHGSITHIDDVISQAQTTR 176
               ++RE   L+ SVR DI  YK+ SG  + R ++ L+E   +  S   I++ IS A  T+
Sbjct:   129 FMAIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAMATK 188

Query:   177 TVLGSQRALFGDVQGKVKVLSDKFPIXXXXXXXXXXXXXXDTLILAAVIAGCTLFLIIY 235
               + SQR +   +Q K+  L+++FP               D+LIL  VI  CT+ L++Y
Sbjct:   189 ENMTSQRGMLKSIQSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGVCTILLLLY 247

GO:0000139 "Golgi membrane" evidence=IEA

GO:0042147 "retrograde transport, endosome to Golgi" evidence=IEA

GO:0005484 "SNAP receptor activity" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0005801 "cis-Golgi network" evidence=IEA

MGI|MGI:1858260 Gosr1 "golgi SNAP receptor complex member 1" [Mus musculus (taxid:10090)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 84/239 (35%), Positives = 133/239 (55%)

Query:    13 WEELRKEARKIEGDLDVKLSSYAKLGARFTQGGYVDTG--------SPTV-GSG--RSWK 61
             WE+LRK+AR++E +LD+KL S++KL   ++  G  D G        +P + GS   R ++
Sbjct:     9 WEDLRKQARQLENELDLKLVSFSKLCTSYSHSGSRDGGRDRYSSDTTPLLNGSSQDRMFE 68

Query:    62 SMEMEIQSLLEKLLDINDAMSRCAASAA-PT--TSVTQKLARHRDILHEFTQEFRRIKGN 118
             +M +EI+ LL +L  +ND M+    SA  P+   ++   L RHRDIL ++T EF + K N
Sbjct:    69 TMAIEIEQLLARLTGVNDKMAEYTHSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKAN 128

Query:   119 INSMREHAELLSSVRDDISEYKA-SGSMSPRMQI-LRERAAIHGSITHIDDVISQAQTTR 176
               ++RE   L+ SVR DI  YK+ SG  + R ++ L+E   +  S   I++ IS A  T+
Sbjct:   129 FTAIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAMATK 188

Query:   177 TVLGSQRALFGDVQGKVKVLSDKFPIXXXXXXXXXXXXXXDTLILAAVIAGCTLFLIIY 235
               + SQR +   +  K+  L+++FP               D+LIL  VI  CT+ L++Y
Sbjct:   189 ENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGICTILLLLY 247

GO:0000139 "Golgi membrane" evidence=ISO;IDA

GO:0005484 "SNAP receptor activity" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0005801 "cis-Golgi network" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISO

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=ISO

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0042147 "retrograde transport, endosome to Golgi" evidence=ISO

UNIPROTKB|Q2TBU3 GOSR1 "Golgi SNAP receptor complex member 1" [Bos taurus (taxid:9913)]

 Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
 Identities = 84/239 (35%), Positives = 133/239 (55%)

Query:    13 WEELRKEARKIEGDLDVKLSSYAKLGARFTQGG--------YVDTGSPTV-GSG--RSWK 61
             WE+LRK+AR++E +LD+KL S++KL   ++           Y    +P + GS   R ++
Sbjct:     9 WEDLRKQARQLENELDLKLVSFSKLCTSYSHSSARDGRRDRYSSDTTPLLNGSSQDRMFE 68

Query:    62 SMEMEIQSLLEKLLDINDAMSRCAASAA-PT--TSVTQKLARHRDILHEFTQEFRRIKGN 118
             +M +EI+ LL +L  IND M+   +SA  P+   ++   L RHRDIL ++T EF + K N
Sbjct:    69 TMAIEIEQLLARLTGINDKMAEYTSSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKAN 128

Query:   119 INSMREHAELLSSVRDDISEYKA-SGSMSPRMQI-LRERAAIHGSITHIDDVISQAQTTR 176
               ++RE   L+ SVR DI  YK+ SG  + R ++ L+E   +  S   I++ IS A  T+
Sbjct:   129 FVAIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAMATK 188

Query:   177 TVLGSQRALFGDVQGKVKVLSDKFPIXXXXXXXXXXXXXXDTLILAAVIAGCTLFLIIY 235
               + SQR +   +Q K+  L+++FP               D+LIL  VI  CT+ L++Y
Sbjct:   189 ENMTSQRGMLKSIQSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGVCTILLLLY 247

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0005801 "cis-Golgi network" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|E9PCW1 GOSR1 "Golgi SNAP receptor complex member 1" [Homo sapiens (taxid:9606)]

 Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
 Identities = 85/239 (35%), Positives = 133/239 (55%)

Query:    11 SGWEELRKEARKIEGDLDVKLSSYAKLGARF----TQGGYVDTGSPTV---GSG--RSWK 61
             S WE+LRK+AR++E +LD+KL S++KL   +    T+ G  D+   T    GS   R ++
Sbjct:     7 SYWEDLRKQARQLENELDLKLVSFSKLCTSYSHSSTRDGRRDSSDTTPLLNGSSQDRMFE 66

Query:    62 SMEMEIQSLLEKLLDINDAMSRCAASAA-PT--TSVTQKLARHRDILHEFTQEFRRIKGN 118
             +M +EI+ LL +L  +ND M+    SA  P+   ++   L RHRDIL ++T EF + K N
Sbjct:    67 TMAIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKAN 126

Query:   119 INSMREHAELLSSVRDDISEYKA-SGSMSPRMQI-LRERAAIHGSITHIDDVISQAQTTR 176
               ++RE   L+ SVR DI  YK+ SG  + R ++ L+E   +  S   I++ IS A  T+
Sbjct:   127 FMAIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAMATK 186

Query:   177 TVLGSQRALFGDVQGKVKVLSDKFPIXXXXXXXXXXXXXXDTLILAAVIAGCTLFLIIY 235
               + SQR +   +  K+  L+++FP               D+LIL  VI  CT+ L++Y
Sbjct:   187 ENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGICTILLLLY 245

GO:0005801 "cis-Golgi network" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

UNIPROTKB|K7GKB9 LOC100517676 "Golgi SNAP receptor complex member 1" [Sus scrofa (taxid:9823)]

 Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
 Identities = 83/237 (35%), Positives = 132/237 (55%)

Query:    13 WEELRKEARKIEGDLDVKLSSYAKLGARFTQG----GYVDTGSPTV---GSG--RSWKSM 63
             WE+LRK+AR++E +LD+KL S++KL   ++      G  D+   T    GS   R +++M
Sbjct:     9 WEDLRKQARQLENELDLKLVSFSKLCTSYSHSSARDGRRDSSDTTPLLNGSSQDRMFETM 68

Query:    64 EMEIQSLLEKLLDINDAMSRCAASAA-PT--TSVTQKLARHRDILHEFTQEFRRIKGNIN 120
              +EI+ LL +L  +ND M+    SA  P+   ++   L RHRDIL ++T EF + K N  
Sbjct:    69 AIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKANFV 128

Query:   121 SMREHAELLSSVRDDISEYKA-SGSMSPRMQI-LRERAAIHGSITHIDDVISQAQTTRTV 178
             ++RE   L+ SVR DI  YK+ SG  + R ++ L+E   +  S   I++ IS A  T+  
Sbjct:   129 AIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAMATKEN 188

Query:   179 LGSQRALFGDVQGKVKVLSDKFPIXXXXXXXXXXXXXXDTLILAAVIAGCTLFLIIY 235
             + SQR +   +Q K+  L+++FP               D+LIL  V+  CT+ L++Y
Sbjct:   189 MTSQRGMLKSIQSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVVGICTILLLLY 245

GO:0000139 "Golgi membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0005801 "cis-Golgi network" evidence=IEA

ZFIN|ZDB-GENE-050417-133 gosr1 "golgi SNAP receptor complex member 1" [Danio rerio (taxid:7955)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 84/235 (35%), Positives = 130/235 (55%)

Query:    15 ELRKEARKIEGDLDVKLSSYAKLGARFTQ---GGYVDTGSPTVG------SGRSWKSMEM 65
             +LRK+AR++E +LD+KL S++KL   ++    G   D+ S T          R +++M +
Sbjct:    13 DLRKQARQLENELDLKLVSFSKLCTSYSSSRDGRRGDSSSDTTPLLCNSTQDRMFETMSV 72

Query:    66 EIQSLLEKLLDINDAMSRCAASAAPTT---SVTQKLARHRDILHEFTQEFRRIKGNINSM 122
             EI+ LL KL  +ND M+   ++   T+   ++   L RHRDIL ++T EF + K N  ++
Sbjct:    73 EIEQLLAKLTGVNDKMAEYTSTPGVTSLNAALMHTLQRHRDILQDYTHEFHKTKSNFMAI 132

Query:   123 REHAELLSSVRDDISEYKA-SGSMSPRMQI-LRERAAIHGSITHIDDVISQAQTTRTVLG 180
             RE  +LL SVR DI  YK+ SG  + R ++ L+E   +  S   IDD IS A  T+  + 
Sbjct:   133 REREDLLGSVRKDIETYKSGSGVNNRRTELFLKEHEHLRNSDRLIDDTISIAMATKENMT 192

Query:   181 SQRALFGDVQGKVKVLSDKFPIXXXXXXXXXXXXXXDTLILAAVIAGCTLFLIIY 235
             SQR L   +Q +V  L+++FP               D+LIL  VI  CT+ L++Y
Sbjct:   193 SQRGLLKSIQSRVNTLANRFPAINNLIQRINLRKRRDSLILGGVIGICTILLLLY 247

GO:0000139 "Golgi membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005801 "cis-Golgi network" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

UNIPROTKB|O08522 GOSR1 "Golgi SNAP receptor complex member 1" [Cricetulus griseus (taxid:10029)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 84/239 (35%), Positives = 133/239 (55%)

Query:    13 WEELRKEARKIEGDLDVKLSSYAKLGARFTQ-----GG---YVDTGSPTV-GSG--RSWK 61
             WE+LRK+AR++E +LD+KL S++KL   ++      GG   Y    +P + GS   R ++
Sbjct:     9 WEDLRKQARQLENELDLKLVSFSKLCTSYSHSSARDGGRDRYSSDTTPLLNGSSQDRMFE 68

Query:    62 SMEMEIQSLLEKLLDINDAMSRCAASAA-PT--TSVTQKLARHRDILHEFTQEFRRIKGN 118
             +M +EI+ LL +L  +ND M+    SA  P+   ++   L RHRDIL ++T EF + K N
Sbjct:    69 TMAIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKAN 128

Query:   119 INSMREHAELLSSVRDDISEYKA-SGSMSPRMQI-LRERAAIHGSITHIDDVISQAQTTR 176
               ++RE   L+ SVR DI  YK+ SG  + R ++ L+E   +  S   I++ IS A  T+
Sbjct:   129 FMAIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAMATK 188

Query:   177 TVLGSQRALFGDVQGKVKVLSDKFPIXXXXXXXXXXXXXXDTLILAAVIAGCTLFLIIY 235
               + SQR +   +  K+  L+++FP               D+LIL  VI  CT+ L++Y
Sbjct:   189 ENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGICTILLLLY 247

GO:0000138 "Golgi trans cisterna" evidence=IDA

GO:0005484 "SNAP receptor activity" evidence=NAS

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IDA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=IDA

RGD|71093 Gosr1 "golgi SNAP receptor complex member 1" [Rattus norvegicus (taxid:10116)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 84/239 (35%), Positives = 133/239 (55%)

Query:    13 WEELRKEARKIEGDLDVKLSSYAKLGARFTQ-----GG---YVDTGSPTV-GSG--RSWK 61
             WE+LRK+AR++E +LD+KL S++KL   ++      GG   Y    +P + GS   R ++
Sbjct:     9 WEDLRKQARQLENELDLKLVSFSKLCTSYSHSSARDGGRDRYSSDTTPLLNGSSQDRMFE 68

Query:    62 SMEMEIQSLLEKLLDINDAMSRCAASAA-PT--TSVTQKLARHRDILHEFTQEFRRIKGN 118
             +M +EI+ LL +L  +ND M+    SA  P+   ++   L RHRDIL ++T EF + K N
Sbjct:    69 TMAIEIEQLLARLTGVNDKMAEYTHSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKAN 128

Query:   119 INSMREHAELLSSVRDDISEYKA-SGSMSPRMQI-LRERAAIHGSITHIDDVISQAQTTR 176
               ++RE   L+ SVR DI  YK+ SG  + R ++ L+E   +  S   I++ IS A  T+
Sbjct:   129 FMAIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAMATK 188

Query:   177 TVLGSQRALFGDVQGKVKVLSDKFPIXXXXXXXXXXXXXXDTLILAAVIAGCTLFLIIY 235
               + SQR +   +  K+  L+++FP               D+LIL  VI  CT+ L++Y
Sbjct:   189 ENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGICTILLLLY 247

GO:0000139 "Golgi membrane" evidence=IEA;ISO

GO:0005484 "SNAP receptor activity" evidence=IEA;ISO

GO:0005794 "Golgi apparatus" evidence=ISO;IDA

GO:0005801 "cis-Golgi network" evidence=IDA;TAS

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IDA

GO:0015031 "protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IDA

GO:0042147 "retrograde transport, endosome to Golgi" evidence=IEA;ISO

UNIPROTKB|O95249 GOSR1 "Golgi SNAP receptor complex member 1" [Homo sapiens (taxid:9606)]

 Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 85/241 (35%), Positives = 134/241 (55%)

Query:    11 SGWEELRKEARKIEGDLDVKLSSYAKLGARF----TQGG----YVDTGSPTV-GSG--RS 59
             S WE+LRK+AR++E +LD+KL S++KL   +    T+ G    Y    +P + GS   R 
Sbjct:     7 SYWEDLRKQARQLENELDLKLVSFSKLCTSYSHSSTRDGRRDRYSSDTTPLLNGSSQDRM 66

Query:    60 WKSMEMEIQSLLEKLLDINDAMSRCAASAA-PT--TSVTQKLARHRDILHEFTQEFRRIK 116
             +++M +EI+ LL +L  +ND M+    SA  P+   ++   L RHRDIL ++T EF + K
Sbjct:    67 FETMAIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTK 126

Query:   117 GNINSMREHAELLSSVRDDISEYKA-SGSMSPRMQI-LRERAAIHGSITHIDDVISQAQT 174
              N  ++RE   L+ SVR DI  YK+ SG  + R ++ L+E   +  S   I++ IS A  
Sbjct:   127 ANFMAIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAMA 186

Query:   175 TRTVLGSQRALFGDVQGKVKVLSDKFPIXXXXXXXXXXXXXXDTLILAAVIAGCTLFLII 234
             T+  + SQR +   +  K+  L+++FP               D+LIL  VI  CT+ L++
Sbjct:   187 TKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGICTILLLL 246

Query:   235 Y 235
             Y
Sbjct:   247 Y 247

GO:0015031 "protein transport" evidence=IEA

GO:0005801 "cis-Golgi network" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=TAS

GO:0031201 "SNARE complex" evidence=TAS

GO:0005484 "SNAP receptor activity" evidence=IDA

GO:0042147 "retrograde transport, endosome to Golgi" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0000139 "Golgi membrane" evidence=IDA

UNIPROTKB|F1RN67 LOC100517676 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 82/239 (34%), Positives = 132/239 (55%)

Query:    13 WEELRKEARKIEGDLDVKLSSYAKLGARFTQGG--------YVDTGSPTV-GSG--RSWK 61
             WE+LRK+AR++E +LD+KL S++KL   ++           Y    +P + GS   R ++
Sbjct:     9 WEDLRKQARQLENELDLKLVSFSKLCTSYSHSSARDGRRDRYSSDTTPLLNGSSQDRMFE 68

Query:    62 SMEMEIQSLLEKLLDINDAMSRCAASAA-PT--TSVTQKLARHRDILHEFTQEFRRIKGN 118
             +M +EI+ LL +L  +ND M+    SA  P+   ++   L RHRDIL ++T EF + K N
Sbjct:    69 TMAIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKAN 128

Query:   119 INSMREHAELLSSVRDDISEYKA-SGSMSPRMQI-LRERAAIHGSITHIDDVISQAQTTR 176
               ++RE   L+ SVR DI  YK+ SG  + R ++ L+E   +  S   I++ IS A  T+
Sbjct:   129 FVAIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAMATK 188

Query:   177 TVLGSQRALFGDVQGKVKVLSDKFPIXXXXXXXXXXXXXXDTLILAAVIAGCTLFLIIY 235
               + SQR +   +Q K+  L+++FP               D+LIL  V+  CT+ L++Y
Sbjct:   189 ENMTSQRGMLKSIQSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVVGICTILLLLY 247

GO:0042147 "retrograde transport, endosome to Golgi" evidence=IEA

GO:0005484 "SNAP receptor activity" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0005801 "cis-Golgi network" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q95ZW1	GOSR1_CAEEL	No assigned EC number	0.3290	0.9288	0.9487	yes	no
Q5RBL6	GOSR1_PONAB	No assigned EC number	0.3755	0.9330	0.8991	yes	no
Q9VE50	GOSR1_DROME	No assigned EC number	0.3559	0.9246	0.9525	yes	no
O95249	GOSR1_HUMAN	No assigned EC number	0.3526	0.9414	0.9	yes	no
O22151	GOS12_ARATH	No assigned EC number	0.8326	1.0	0.9299	no	no
Q2TBU3	GOSR1_BOVIN	No assigned EC number	0.3598	0.9330	0.892	yes	no
O88630	GOSR1_MOUSE	No assigned EC number	0.3598	0.9330	0.892	yes	no
O08522	GOSR1_CRIGR	No assigned EC number	0.3556	0.9330	0.892	yes	no
Q62931	GOSR1_RAT	No assigned EC number	0.3556	0.9330	0.892	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	239
pfam12352	66	pfam12352, V-SNARE_C, Snare region anchored in the	5e-11

>gnl|CDD|152787 pfam12352, V-SNARE_C, Snare region anchored in the vesicle membrane C-terminus

 Score = 56.5 bits (137), Expect = 5e-11
 Identities = 18/65 (27%), Positives = 26/65 (40%)

Query: 150 QILRERAAIHGSITHIDDVISQAQTTRTVLGSQRALFGDVQGKVKVLSDKFPIIRGLLGS 209
           ++LRE   +  S    D+ IS  Q     L SQR      + K+    ++       L  
Sbjct: 2   RLLREHDRLKNSHRIADETISIGQAILEDLHSQRETLKRARNKLHNTDNRLGKSNSTLRL 61

Query: 210 IRRRR 214
           I RRR
Sbjct: 62  INRRR 66

Within the SNARE proteins interactions in the C-terminal half of the SNARE helix are critical to the driving of membrane fusion; whereas interactions in the N-terminal half of the SNARE domain are important for promoting priming or docking of the vesicle pfam05008. Length = 66

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	239
KOG3208	231	consensus SNARE protein GS28 [Intracellular traffi	100.0
KOG1666	220	consensus V-SNARE [Intracellular trafficking, secr	99.94
KOG3251	213	consensus Golgi SNAP receptor complex member [Intr	99.93
PF12352	66	V-SNARE_C: Snare region anchored in the vesicle me	99.5
PF03908	92	Sec20: Sec20; InterPro: IPR005606 Sec20 is a membr	98.59
PF05008	79	V-SNARE: Vesicle transport v-SNARE protein N-termi	97.7
KOG0812	311	consensus SNARE protein SED5/Syntaxin 5 [Intracell	97.3
KOG3202	235	consensus SNARE protein TLG1/Syntaxin 6 [Intracell	96.89
KOG0809	305	consensus SNARE protein TLG2/Syntaxin 16 [Intracel	96.23
KOG0860	116	consensus Synaptobrevin/VAMP-like protein [Intrace	94.78
PF00957	89	Synaptobrevin: Synaptobrevin; InterPro: IPR001388	93.08
PF04210	70	MtrG: Tetrahydromethanopterin S-methyltransferase,	91.57
KOG3385	118	consensus V-SNARE [Intracellular trafficking, secr	89.91
COG4064	75	MtrG Tetrahydromethanopterin S-methyltransferase,	86.51
TIGR01149	70	mtrG N5-methyltetrahydromethanopterin:coenzyme M m	85.66
PF09753	251	Use1: Membrane fusion protein Use1; InterPro: IPR0	85.42
PRK01026	77	tetrahydromethanopterin S-methyltransferase subuni	84.79
PF01544	292	CorA: CorA-like Mg2+ transporter protein; InterPro	83.16
PRK09546	324	zntB zinc transporter; Reviewed	82.71

>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.2e-61  Score=405.78  Aligned_cols=228  Identities=50%  Similarity=0.814  Sum_probs=213.4

Q ss_pred             hhcHHHHHHHHhhhcccccccchhhhhhhhhhccCCcccCCCCCCCCCCcchhhHHHHHHHHHHHhchhhHHhhhhhccC
Q 026388           10 ESGWEELRKEARKIEGDLDVKLSSYAKLGARFTQGGYVDTGSPTVGSGRSWKSMEMEIQSLLEKLLDINDAMSRCAASAA   89 (239)
Q Consensus        10 ~~~w~~lr~~ar~LE~~id~kL~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~eIe~~L~~l~~li~~m~~~~~~~~   89 (239)
                      +++||.||||||+||+++|.||++|+++++. +.++|+++++|..+++..|+.++.|||.+|+++++++|+|...+.+..
T Consensus         4 ~s~we~LRkqArslE~~ld~kL~syskl~as-~~gg~~~~~s~~~~~~~s~ks~~~eie~LLeql~~vndsm~~~~~s~a   82 (231)
T KOG3208|consen    4 SSSWEALRKQARSLENQLDSKLVSYSKLGAS-THGGYDIDTSPLSGSDRSFKSLENEIEGLLEQLQDVNDSMNDCASSPA   82 (231)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCCCCCCCcccccCcCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence            4689999999999999999999999999987 566777888888888889999999999999999999999999544444


Q ss_pred             CchhHHHHHHhhhhhHHHHHHHHHHhhcchhhHHHHHHHHHhhhhhhhhhhccCCCChhhHHHHHhhhhccCchhHHHHH
Q 026388           90 PTTSVTQKLARHRDILHEFTQEFRRIKGNINSMREHAELLSSVRDDISEYKASGSMSPRMQILRERAAIHGSITHIDDVI  169 (239)
Q Consensus        90 ~s~s~~~~l~R~re~L~d~~~ef~r~~~~i~~~~eR~~LL~~~~~d~~~~~~~~~~~~~~~ll~E~~~L~~S~~~ld~~l  169 (239)
                      ++++.+|+|+||||||+||++||+|+++++.+.++|++||++++.|++.|+..++....+++++|+++|++|.+.+|++|
T Consensus        83 ~~aa~~htL~RHrEILqdy~qef~rir~n~~a~~e~~~Ll~s~~~~~~~~~~~~~~~~~e~~lkE~~~in~s~~~vde~I  162 (231)
T KOG3208|consen   83 NSAAVMHTLQRHREILQDYTQEFRRIRSNIDAKRERESLLESVRADISSYPSASGFNRGEMYLKEHDHINNSIRLVDELI  162 (231)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccCCCchHHHHHHHhccccchHHHHHHHH
Confidence            67899999999999999999999999999999999999999999998888776666667899999999999999999999


Q ss_pred             hhhhhhhhhhhcccchhhhccchhhhcccchhhHHHhhhhhhhccccchHHHHHHHHHHHHHHHHHHhc
Q 026388          170 SQAQTTRTVLGSQRALFGDVQGKVKVLSDKFPIIRGLLGSIRRRRSRDTLILAAVIAGCTLFLIIYWLS  238 (239)
Q Consensus       170 ~~a~~t~~~L~~QR~~l~~~~~rl~~~~~~lp~~n~li~~I~~R~~rd~iIl~~vI~~ci~~~l~y~~s  238 (239)
                      +||++|+++|+.||.+|++++.|+++++++||.||++|++|++||+||++|||+||++|++|+|||||.
T Consensus       163 s~A~aTre~l~~Qrs~l~~i~~k~~~~a~r~P~IN~Ll~kIk~kkrrdslILa~Vis~C~llllfy~~~  231 (231)
T KOG3208|consen  163 SQAQATRENLHSQRSVLGGINNKVNNIANRFPAINQLLQKIKIKKRRDSLILAAVISVCTLLLLFYWIN  231 (231)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999999999999999999999999999999999999999999984

>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=3.8e-26  Score=191.38  Aligned_cols=207  Identities=21%  Similarity=0.262  Sum_probs=168.5

Q ss_pred             hcHHHHHHHHhhhcccccccchhhhhhhhhhccCCcccCCCCCCCCCCcchhhHHHHHHHHHHHhchhhHHhhhhhccCC
Q 026388           11 SGWEELRKEARKIEGDLDVKLSSYAKLGARFTQGGYVDTGSPTVGSGRSWKSMEMEIQSLLEKLLDINDAMSRCAASAAP   90 (239)
Q Consensus        11 ~~w~~lr~~ar~LE~~id~kL~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~eIe~~L~~l~~li~~m~~~~~~~~~   90 (239)
                      .-|+..-+|.+-|-.+|..|++...++.                  .++.+.+..+|+..+++++++++||+.+|+..||
T Consensus         3 ~~fe~yEqqy~~l~a~it~k~~~~~~~~------------------~~ekk~~l~~i~~~leEa~ell~qMdlEvr~lp~   64 (220)
T KOG1666|consen    3 SLFEGYEQQYRELSAEITKKIGRALSLP------------------GSEKKQLLSEIDSKLEEANELLDQMDLEVRELPP   64 (220)
T ss_pred             hHHHHHHHHHHHHHHHHHHhHHHHhcCC------------------chHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCc
Confidence            3466677777777777766665544331                  2267889999999999999999999999999887


Q ss_pred             c--hhHHHHHHhhhhhHHHHHHHHHHhhcchhhHHHHHHHHHhhhhhhhhhhccCCCChhhHHHHHhhhh-------ccC
Q 026388           91 T--TSVTQKLARHRDILHEFTQEFRRIKGNINSMREHAELLSSVRDDISEYKASGSMSPRMQILRERAAI-------HGS  161 (239)
Q Consensus        91 s--~s~~~~l~R~re~L~d~~~ef~r~~~~i~~~~eR~~LL~~~~~d~~~~~~~~~~~~~~~ll~E~~~L-------~~S  161 (239)
                      +  +++..+++-|+..|.+++.|++++.+.--...+|+++++....|..    +...+++++||+.+++|       ..|
T Consensus        65 ~~Rs~~~~KlR~yksdl~~l~~e~k~~~~~~~~~~~rde~~~~~~add~----~~~~dQR~rLl~nTerLeRst~rl~ds  140 (220)
T KOG1666|consen   65 NFRSSYLSKLREYKSDLKKLKRELKRTTSRNLNAGDRDELLEALEADDQ----NISADQRARLLQNTERLERSTDRLKDS  140 (220)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHhhhhcccc----ccchhHHHHHHhhhHHHHHhHHHHHHH
Confidence            6  4666789999999999999999998544446789999887554322    11245667777655555       556


Q ss_pred             chhHHHHHhhhhhhhhhhhcccchhhhccchhhhcccchhhHHHhhhhhhhccccchHHHHHHHHHHHHHHHHHHhcC
Q 026388          162 ITHIDDVISQAQTTRTVLGSQRALFGDVQGKVKVLSDKFPIIRGLLGSIRRRRSRDTLILAAVIAGCTLFLIIYWLSK  239 (239)
Q Consensus       162 ~~~ld~~l~~a~~t~~~L~~QR~~l~~~~~rl~~~~~~lp~~n~li~~I~~R~~rd~iIl~~vI~~ci~~~l~y~~sK  239 (239)
                      +|.+.++.++|.+++++|+.||++|.+++.++++++..++.+++++.-|.||..+++|++++||++.++++++..|+|
T Consensus       141 ~Ria~ETEqIG~~IL~dL~~QRe~L~rar~rL~~td~~lgkS~kiL~tM~RR~~~nk~~~~aii~~l~~~il~ilY~k  218 (220)
T KOG1666|consen  141 QRIALETEQIGSEILEDLHGQREQLERARERLRETDANLGKSRKILTTMTRRLIRNKFTLTAIIALLVLAILLILYSK  218 (220)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            688889999999999999999999999999999999999999999999999999999999999999988887777765

>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=2e-25  Score=187.81  Aligned_cols=198  Identities=19%  Similarity=0.271  Sum_probs=151.0

Q ss_pred             HHHHHHHhhhcccccccchhhhhhhhhhccCCcccCCCCCCCCCCcchhhHHHHHHHHHHHhchhhHHhhhhhccCCchh
Q 026388           14 EELRKEARKIEGDLDVKLSSYAKLGARFTQGGYVDTGSPTVGSGRSWKSMEMEIQSLLEKLLDINDAMSRCAASAAPTTS   93 (239)
Q Consensus        14 ~~lr~~ar~LE~~id~kL~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~eIe~~L~~l~~li~~m~~~~~~~~~s~s   93 (239)
                      +.|.+++...=.++...|..+++...         +        .+...++.+|+..+.++...|+.|+..+.+.||+. 
T Consensus         2 ~~ly~~t~~~~~k~q~~l~rlE~~~~---------~--------~e~~~v~~~i~~sI~~~~s~~~rl~~~~~~epp~~-   63 (213)
T KOG3251|consen    2 DALYQSTNRQLDKLQRGLIRLERTIK---------T--------QEVSAVENSIQRSIDQYASRCQRLDVLVSKEPPKS-   63 (213)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHcccc---------c--------cchHHHHHHHHHhHHHHHHHHHHHHhHhhcCCCCc-
Confidence            34566666666666666677776521         0        24477999999999999999999999999988764 


Q ss_pred             HHHHHHhhhhhHHHHHHHHHHhhcc-----------hhhHHHHHHHHHhhhhhhhhhhccCCCChhhHHHHHhhhhccCc
Q 026388           94 VTQKLARHRDILHEFTQEFRRIKGN-----------INSMREHAELLSSVRDDISEYKASGSMSPRMQILRERAAIHGSI  162 (239)
Q Consensus        94 ~~~~l~R~re~L~d~~~ef~r~~~~-----------i~~~~eR~~LL~~~~~d~~~~~~~~~~~~~~~ll~E~~~L~~S~  162 (239)
                        .+-.|.+  .++++.+|..++..           .+++++|++||.+....    .......+.|.++++++.+.+||
T Consensus        64 --rq~~rlr--~dQl~~d~~~l~~~l~~~~~R~~~r~~~~~er~~lL~~~~~~----~~~~~~~~~D~el~~~d~l~~s~  135 (213)
T KOG3251|consen   64 --RQAARLR--VDQLLEDVEHLQTSLRTSMNRNNRREQQARERVELLDRRFTN----GATGTSIPFDEELQENDSLKRSH  135 (213)
T ss_pred             --HHHHHHH--HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCC----CCccCCCcchHHHHhhhHHHHHH
Confidence              2223333  44444444444433           34466788888763211    01122335799999999999999


Q ss_pred             hhHHHHHhhhhhhhhhhhcccchhhhccchhhhcccchhhHHHhhhhhhhccccchHHH-HHHHHHHHHHHHHHHh
Q 026388          163 THIDDVISQAQTTRTVLGSQRALFGDVQGKVKVLSDKFPIIRGLLGSIRRRRSRDTLIL-AAVIAGCTLFLIIYWL  237 (239)
Q Consensus       163 ~~ld~~l~~a~~t~~~L~~QR~~l~~~~~rl~~~~~~lp~~n~li~~I~~R~~rd~iIl-~~vI~~ci~~~l~y~~  237 (239)
                      +++|++|.+|.+++++|..||-+|+++++||+++++++|.+|++|+.|++|-+.|++|+ ||||.|||+|+++|.|
T Consensus       136 ~~lDd~l~~G~~ile~l~~Q~~~L~~~~~ki~~~~ntLGlSn~ti~lIeRR~~~Dk~iF~~G~i~~~v~~yl~~~w  211 (213)
T KOG3251|consen  136 NMLDDLLESGSAILENLVEQRLTLKGTQKKILDILNTLGLSNQTIRLIERRVREDKIIFYGGVILTLVIMYLFYRW  211 (213)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999988 8888888887655544

>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C

Probab=99.50  E-value=7e-15  Score=103.48  Aligned_cols=66  Identities=27%  Similarity=0.349  Sum_probs=63.9

Q ss_pred             hHHHHHhhhhccCchhHHHHHhhhhhhhhhhhcccchhhhccchhhhcccchhhHHHhhhhhhhcc
Q 026388          149 MQILRERAAIHGSITHIDDVISQAQTTRTVLGSQRALFGDVQGKVKVLSDKFPIIRGLLGSIRRRR  214 (239)
Q Consensus       149 ~~ll~E~~~L~~S~~~ld~~l~~a~~t~~~L~~QR~~l~~~~~rl~~~~~~lp~~n~li~~I~~R~  214 (239)
                      |+|++|+++|++|++++++++++|.+|+.+|..||++|+++++|+.++.+++|.++++|+.|.+|+
T Consensus         1 d~l~~e~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~rR~   66 (66)
T PF12352_consen    1 DRLLRESDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRISRRK   66 (66)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHccC
Confidence            589999999999999999999999999999999999999999999999999999999999999985

>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway

Probab=98.59  E-value=6e-08  Score=72.64  Aligned_cols=72  Identities=14%  Similarity=0.189  Sum_probs=66.8

Q ss_pred             hhhhccCchhHHHHHhhhhhhhhhhhcccchhhhccchhhhcccchhhHHHhhhhhhhccccchHHHHHHHH
Q 026388          155 RAAIHGSITHIDDVISQAQTTRTVLGSQRALFGDVQGKVKVLSDKFPIIRGLLGSIRRRRSRDTLILAAVIA  226 (239)
Q Consensus       155 ~~~L~~S~~~ld~~l~~a~~t~~~L~~QR~~l~~~~~rl~~~~~~lp~~n~li~~I~~R~~rd~iIl~~vI~  226 (239)
                      .+.|.++++++.+.++++..+.+.|..|.++|+.+++...++...+..+.+++..|+++...|++|+.+.++
T Consensus         7 T~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~~li~~~~~   78 (92)
T PF03908_consen    7 TESLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDRILIFFAFL   78 (92)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            467899999999999999999999999999999999999999999999999999999999999998854433

>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles

Probab=97.70  E-value=7.7e-05  Score=53.87  Aligned_cols=55  Identities=24%  Similarity=0.291  Sum_probs=39.4

Q ss_pred             cchhhHHHHHHHHHHHhchhhHHhhhhhccCCc--hhHHHHHHhhhhhHHHHHHHHH
Q 026388           59 SWKSMEMEIQSLLEKLLDINDAMSRCAASAAPT--TSVTQKLARHRDILHEFTQEFR  113 (239)
Q Consensus        59 ~~~~l~~eIe~~L~~l~~li~~m~~~~~~~~~s--~s~~~~l~R~re~L~d~~~ef~  113 (239)
                      +.+....+|+..|+++.+++++|+.++.+.|++  ..+...+..||..|..++++|+
T Consensus        22 ~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~l~   78 (79)
T PF05008_consen   22 QRKSLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKELK   78 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            679999999999999999999999999977533  1333345555555555555443

The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.

>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.30  E-value=0.0046  Score=54.95  Aligned_cols=217  Identities=15%  Similarity=0.213  Sum_probs=119.1

Q ss_pred             hcHHHHHHHHhhhccccc---ccchhhhhhhhhhccCCcccCCCCCCCCCCcchhhHHHHHHHHHHHhchhhHHhhhhhc
Q 026388           11 SGWEELRKEARKIEGDLD---VKLSSYAKLGARFTQGGYVDTGSPTVGSGRSWKSMEMEIQSLLEKLLDINDAMSRCAAS   87 (239)
Q Consensus        11 ~~w~~lr~~ar~LE~~id---~kL~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~eIe~~L~~l~~li~~m~~~~~~   87 (239)
                      ..-.+.-+.|.+.=.+|-   .||..+..||-.-.   ..+.  -++    +...+.--|..-+.-+..-+-++..+...
T Consensus        38 ~~~seF~~~A~~Ig~~is~T~~kl~kLa~lAKrks---~f~D--r~V----eI~eLT~iikqdi~sln~~i~~Lqei~~~  108 (311)
T KOG0812|consen   38 SQGSEFNKKASRIGKEISQTGAKLEKLAQLAKRKS---LFDD--RPV----EIQELTFIIKQDITSLNSQIAQLQEIVKA  108 (311)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---cccC--cch----hhHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            334455666666665554   45555555543210   0000  011    33444455555555666666666555432


Q ss_pred             cCCchhHHHHHHhhhhhHHHHHHHHHHhhcc-----------hhhHHHHHHHHHhhhhhhhhhhcc--------------
Q 026388           88 AAPTTSVTQKLARHRDILHEFTQEFRRIKGN-----------INSMREHAELLSSVRDDISEYKAS--------------  142 (239)
Q Consensus        88 ~~~s~s~~~~l~R~re~L~d~~~ef~r~~~~-----------i~~~~eR~~LL~~~~~d~~~~~~~--------------  142 (239)
                      .+ +.+-.+...+++++..++..-...+...           .++.++|.+.|.......+....+              
T Consensus       109 ~g-n~s~~~~~~Hs~~vV~~Lqs~la~is~~fk~VLE~Rtenmka~k~R~dkfs~~~a~~~a~p~~n~~a~~~~~~~l~~  187 (311)
T KOG0812|consen  109 NG-NLSNKQLVQHSKNVVVSLQSKLANISKDFKDVLEIRTENMKAVKNRRDKFSASYASLNANPVSNSAARLHPLKLLVD  187 (311)
T ss_pred             hc-cccchHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHhccccCCCCCcccCcccccCCchhhhcC
Confidence            22 1111233555555555555444443333           344677888886532211110000              


Q ss_pred             ----------------CCCC--hhhHHHHHhhh--------hccCchhHHHHHhhhhhhhhhhhcccchhhhccchhhhc
Q 026388          143 ----------------GSMS--PRMQILRERAA--------IHGSITHIDDVISQAQTTRTVLGSQRALFGDVQGKVKVL  196 (239)
Q Consensus       143 ----------------~~~~--~~~~ll~E~~~--------L~~S~~~ld~~l~~a~~t~~~L~~QR~~l~~~~~rl~~~  196 (239)
                                      +...  +...++.|.+-        +++-...+-++=++=.+.-.-...|.++++++..-+.++
T Consensus       188 ~~~~~sq~~~~ln~gd~~~~qqqQm~ll~es~~Y~Q~R~~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds  267 (311)
T KOG0812|consen  188 PKDEASQDVESLNMGDSSNPQQQQMALLDESDEYVQERAKTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDS  267 (311)
T ss_pred             chhhcccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhh
Confidence                            0011  22355555511        122222233333333444455678999999999999999


Q ss_pred             ccchhhHHHhhhhhhhccccchHHHHHHHHHHHHHHHHHHh
Q 026388          197 SDKFPIIRGLLGSIRRRRSRDTLILAAVIAGCTLFLIIYWL  237 (239)
Q Consensus       197 ~~~lp~~n~li~~I~~R~~rd~iIl~~vI~~ci~~~l~y~~  237 (239)
                      +-.+.+..+.|-+-=.|-..++|.+.=|++++|+|+++||+
T Consensus       268 ~lnI~gA~~ellKy~e~vSSNRwLmvkiF~i~ivFflvfvl  308 (311)
T KOG0812|consen  268 DLNIEGAHSELLKYFERVSSNRWLMVKIFGILIVFFLVFVL  308 (311)
T ss_pred             hhhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence            99999999999888788888999988787888877766654

>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.89  E-value=0.016  Score=50.52  Aligned_cols=195  Identities=14%  Similarity=0.175  Sum_probs=118.3

Q ss_pred             hhcHHHHHHHHhhhcccccccchhhhhhhhhhccCCcccCCCCCCCCCCcchhhHHHHHHHHHHHhchhhHHhhhhhccC
Q 026388           10 ESGWEELRKEARKIEGDLDVKLSSYAKLGARFTQGGYVDTGSPTVGSGRSWKSMEMEIQSLLEKLLDINDAMSRCAASAA   89 (239)
Q Consensus        10 ~~~w~~lr~~ar~LE~~id~kL~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~eIe~~L~~l~~li~~m~~~~~~~~   89 (239)
                      ..+|-..+.++.++.+++...+..|+.++..        .+++.+.   .-..+...|+..++.+++++.=+..-.....
T Consensus         5 ~Dp~~~v~~e~~k~~~~~~~~~~r~~~~~~~--------~~~~~~~---~t~~lr~~i~~~~edl~~~~~il~~~~~~~~   73 (235)
T KOG3202|consen    5 EDPFFRVKNETLKLSEEIQGLYQRRSELLKD--------TGSDAEE---LTSVLRRSIEEDLEDLDELISILERNPSKFG   73 (235)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHhh--------ccchhHH---HHHHHHHHhHHHHHHHHHHHHHHHhCccccc
Confidence            4579999999999999999999999998732        0111110   1122335777777777777765554332221


Q ss_pred             -Cch---hHHHHHHhhhhhHHHHHHHHHHhhcchhhHHHHHHHHHhhhhhh--hhhhccCCCC-------hhhHHHHHh-
Q 026388           90 -PTT---SVTQKLARHRDILHEFTQEFRRIKGNINSMREHAELLSSVRDDI--SEYKASGSMS-------PRMQILRER-  155 (239)
Q Consensus        90 -~s~---s~~~~l~R~re~L~d~~~ef~r~~~~i~~~~eR~~LL~~~~~d~--~~~~~~~~~~-------~~~~ll~E~-  155 (239)
                       +..   ...+.+.+-+..+.+.+..|..  ..+.....|..|++.-..++  .......+.+       ....+++|+ 
T Consensus        74 ide~El~~R~~~i~~lr~q~~~~~~~~~~--~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~~D~v~~~~~~qqqm~~eQD  151 (235)
T KOG3202|consen   74 IDEFELSRRRRFIDNLRTQLRQMKSKMAM--SGFANSNIRDILLGPEKSPNLDEAMSRASGLDNVQEIVQLQQQMLQEQD  151 (235)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHh--hccccccchhhhcCCCCCCchhhhHHHhhccCcHHHHHHHHHHHHHHHH
Confidence             111   1222355555555555544444  11111123677775422221  1111111111       123455554 


Q ss_pred             hhhccCchhHHHHHhhhhhhhhhhhcccchhhhccchhhhcccchhhHHHhhhhhhhccccc
Q 026388          156 AAIHGSITHIDDVISQAQTTRTVLGSQRALFGDVQGKVKVLSDKFPIIRGLLGSIRRRRSRD  217 (239)
Q Consensus       156 ~~L~~S~~~ld~~l~~a~~t~~~L~~QR~~l~~~~~rl~~~~~~lp~~n~li~~I~~R~~rd  217 (239)
                      +.|+.-+..+-.+-++|.++-++|..|..+|.....=|-.+.++|-...+-+.++++.+...
T Consensus       152 e~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~~~s~~  213 (235)
T KOG3202|consen  152 EGLDGLSATVQRLKGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVNRMASQC  213 (235)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            46888888888899999999999999999999887777777778877777777777744443

>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.23  E-value=0.054  Score=48.44  Aligned_cols=220  Identities=15%  Similarity=0.218  Sum_probs=122.5

Q ss_pred             hhcHHHHHHHHhhhcccccccchhhhhhhhhhccCCcccCCCCCCCCCCcchhhHHHHHHHHHHHhchhhHHhhhhhccC
Q 026388           10 ESGWEELRKEARKIEGDLDVKLSSYAKLGARFTQGGYVDTGSPTVGSGRSWKSMEMEIQSLLEKLLDINDAMSRCAASAA   89 (239)
Q Consensus        10 ~~~w~~lr~~ar~LE~~id~kL~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~eIe~~L~~l~~li~~m~~~~~~~~   89 (239)
                      ++.|-+.=.++...=..+-.++..+.+.-++....++.|.    ...+.+.+.+..+|..+|.+.+.++..+.......+
T Consensus        56 pP~wvd~~~ev~~~l~rvrrk~~eLgk~~~Khl~PsF~Dk----~ede~~IE~ltq~Itqll~~cqk~iq~~~a~~n~~~  131 (305)
T KOG0809|consen   56 PPAWVDVAEEVDYYLSRVRRKIDELGKAHAKHLRPSFSDK----REDEHEIEELTQEITQLLQKCQKLIQRLSASLNQLS  131 (305)
T ss_pred             CCcccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc----chhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence            4568888777777777777888877777655432222111    112234566777788888888887776665433233


Q ss_pred             CchhHH--HHHHhhhhhHHHHHHHHHHhhcchhh-HHHHHH----HHHh----hh-hhhhhhhccCCCChhhHHH-----
Q 026388           90 PTTSVT--QKLARHRDILHEFTQEFRRIKGNINS-MREHAE----LLSS----VR-DDISEYKASGSMSPRMQIL-----  152 (239)
Q Consensus        90 ~s~s~~--~~l~R~re~L~d~~~ef~r~~~~i~~-~~eR~~----LL~~----~~-~d~~~~~~~~~~~~~~~ll-----  152 (239)
                      |+....  ....-+-..|+....+|+..+.+.-. -+.|++    .+.+    +. .|+.++...  ..+.++++     
T Consensus       132 ~~e~~~~~n~~~~la~~LQ~~s~~fR~~Qs~YLK~l~~~ee~~~~~e~~~~~~~~~~dd~d~~~~--~~qe~ql~~~e~~  209 (305)
T KOG0809|consen  132 PSERLLRKNAQGYLALQLQTLSREFRGLQSKYLKRLRNREENSQEYEDSLDNTVDLPDDEDFSDR--TFQEQQLMLFENN  209 (305)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhcccchhhhccccccCcchhhhhhh--hHHHHHHHHHhcc
Confidence            332211  23455667788889999888876522 222221    1211    11 112222111  11122222     


Q ss_pred             ----HHhhhhccCchhHHHHHhhh---hhhhhhhhcccchhhhccchhhhcccchhhHHHhhhhhhhccccchH-HHHHH
Q 026388          153 ----RERAAIHGSITHIDDVISQA---QTTRTVLGSQRALFGDVQGKVKVLSDKFPIIRGLLGSIRRRRSRDTL-ILAAV  224 (239)
Q Consensus       153 ----~E~~~L~~S~~~ld~~l~~a---~~t~~~L~~QR~~l~~~~~rl~~~~~~lp~~n~li~~I~~R~~rd~i-Il~~v  224 (239)
                          .|++  +.-..++..+++.+   ...-.-...|...+.++-=-+-++.-++-...+=+.++.+..++++- .+++|
T Consensus       210 ~~~~~erE--~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe~yQk~~~k~~~i~~  287 (305)
T KOG0809|consen  210 EEVVRERE--KEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAERYQKRNKKMKVILM  287 (305)
T ss_pred             hHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHHHHHhcCCceEehHH
Confidence                2221  12233333333333   11223346789999999888889988998888888899888888753 34555


Q ss_pred             HHHHHHHHHHHHh
Q 026388          225 IAGCTLFLIIYWL  237 (239)
Q Consensus       225 I~~ci~~~l~y~~  237 (239)
                      .++|||+++++++
T Consensus       288 L~l~ii~llvlli  300 (305)
T KOG0809|consen  288 LTLLIIALLVLLI  300 (305)
T ss_pred             HHHHHHHHHHHHH
Confidence            5556555554443

>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.78  E-value=0.059  Score=41.90  Aligned_cols=85  Identities=13%  Similarity=0.210  Sum_probs=61.2

Q ss_pred             hhhhccCchhHHHHHhhhhhhhhhhhcccchhhhccchh---hhcccch-hhHHHhhhhhhhccccchHHHHHHHHHHHH
Q 026388          155 RAAIHGSITHIDDVISQAQTTRTVLGSQRALFGDVQGKV---KVLSDKF-PIIRGLLGSIRRRRSRDTLILAAVIAGCTL  230 (239)
Q Consensus       155 ~~~L~~S~~~ld~~l~~a~~t~~~L~~QR~~l~~~~~rl---~~~~~~l-p~~n~li~~I~~R~~rd~iIl~~vI~~ci~  230 (239)
                      +.++++....+|++.++=..=-+...+--+.|....+|-   ...++.| -..++|=+++=++..+-.+|++.|++++++
T Consensus        28 ~~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L~~~as~F~~~A~klkrk~wWkn~Km~~il~~v~~i~l~  107 (116)
T KOG0860|consen   28 NDKLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQLQAGASQFEKTAVKLKRKMWWKNCKMRIILGLVIIILLV  107 (116)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457888888999999988765555555555666655554   4444455 355666677778888888999999888888


Q ss_pred             HHHHHHhcC
Q 026388          231 FLIIYWLSK  239 (239)
Q Consensus       231 ~~l~y~~sK  239 (239)
                      +++.|+|.+
T Consensus       108 iiii~~~~~  116 (116)
T KOG0860|consen  108 VIIIYIFLW  116 (116)
T ss_pred             HHHHHHhcC
Confidence            888887753

>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis

Probab=93.08  E-value=0.11  Score=38.04  Aligned_cols=79  Identities=16%  Similarity=0.222  Sum_probs=39.7

Q ss_pred             hhccCchhHHHHHhhhhhhhhhhhcccchhhhccchhhhccc---chh-hHHHhhhhhhhccccchHHHHHHHHHHHHHH
Q 026388          157 AIHGSITHIDDVISQAQTTRTVLGSQRALFGDVQGKVKVLSD---KFP-IIRGLLGSIRRRRSRDTLILAAVIAGCTLFL  232 (239)
Q Consensus       157 ~L~~S~~~ld~~l~~a~~t~~~L~~QR~~l~~~~~rl~~~~~---~lp-~~n~li~~I~~R~~rd~iIl~~vI~~ci~~~  232 (239)
                      .+..-...++++-++-.+..+.+....+.|.....|-.++..   .|. .+..+=+++-.+..+=.+|++++++++++++
T Consensus         4 kl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~~~~~k~~~i~~~iv~~~~~~i   83 (89)
T PF00957_consen    4 KLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMWWRNYKLYIIIIIIVIIIILII   83 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhhhHH
Confidence            344444555666666666666666666666555555444444   332 3344444444444444445555544444444


Q ss_pred             HHH
Q 026388          233 IIY  235 (239)
Q Consensus       233 l~y  235 (239)
                      +++
T Consensus        84 ~~~   86 (89)
T PF00957_consen   84 IIV   86 (89)
T ss_dssp             HHT
T ss_pred             HHH
Confidence            443

Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....

>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea

Probab=91.57  E-value=0.21  Score=35.18  Aligned_cols=53  Identities=21%  Similarity=0.395  Sum_probs=38.3

Q ss_pred             hhhccchhhhcccchhhHH-HhhhhhhhccccchHHHHHHHHHHHHHHHHHHhc
Q 026388          186 FGDVQGKVKVLSDKFPIIR-GLLGSIRRRRSRDTLILAAVIAGCTLFLIIYWLS  238 (239)
Q Consensus       186 l~~~~~rl~~~~~~lp~~n-~li~~I~~R~~rd~iIl~~vI~~ci~~~l~y~~s  238 (239)
                      +..+..||..+..++-..| .+.+++.++--||--|++|+++.+++|+++..++
T Consensus        14 ~~~i~~rLd~iEeKvEf~~~Ei~Qr~GkkiGRDiGIlYG~v~Glii~~~~~~l~   67 (70)
T PF04210_consen   14 FNEIMKRLDEIEEKVEFTNAEIAQRAGKKIGRDIGILYGLVIGLIIFIIYIVLS   67 (70)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456677777777776554 4677888888899999977777777776666554

This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane

>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.91  E-value=0.51  Score=36.64  Aligned_cols=82  Identities=15%  Similarity=0.264  Sum_probs=46.5

Q ss_pred             HHhhhh-ccCchhHHHHHhhhhhhhhhhhcccchhhhccchhhhcccchhhHHHhhhhhhhccccch--HHHHHHHHHHH
Q 026388          153 RERAAI-HGSITHIDDVISQAQTTRTVLGSQRALFGDVQGKVKVLSDKFPIIRGLLGSIRRRRSRDT--LILAAVIAGCT  229 (239)
Q Consensus       153 ~E~~~L-~~S~~~ld~~l~~a~~t~~~L~~QR~~l~~~~~rl~~~~~~lp~~n~li~~I~~R~~rd~--iIl~~vI~~ci  229 (239)
                      +|+++. ++=...+--+=+....+-.+...|..+|.++.+-+..+   =+.+.+.+.+..+=.++..  +..+..+++++
T Consensus        32 ~ENee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdst---s~~L~gtm~r~~~~ar~sg~~l~~~m~~f~lV  108 (118)
T KOG3385|consen   32 RENEEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDST---SGFLSGTMGRLKTMARRSGISLLCWMAVFSLV  108 (118)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhh---HHHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence            555443 33334455555666777788899999999887765544   4555566666555444443  33344433333


Q ss_pred             HHH-HHHHh
Q 026388          230 LFL-IIYWL  237 (239)
Q Consensus       230 ~~~-l~y~~  237 (239)
                      .|+ +|||+
T Consensus       109 ~~fi~~~~l  117 (118)
T KOG3385|consen  109 AFFILWVWL  117 (118)
T ss_pred             HHHHhheee
Confidence            333 44443

>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]

Probab=86.51  E-value=0.83  Score=32.24  Aligned_cols=47  Identities=19%  Similarity=0.364  Sum_probs=31.4

Q ss_pred             hhhccchhhhcccchhhHH-HhhhhhhhccccchHHH-HHHHHHHHHHH
Q 026388          186 FGDVQGKVKVLSDKFPIIR-GLLGSIRRRRSRDTLIL-AAVIAGCTLFL  232 (239)
Q Consensus       186 l~~~~~rl~~~~~~lp~~n-~li~~I~~R~~rd~iIl-~~vI~~ci~~~  232 (239)
                      +..+++|+-++..++-..| .+-++|..+--||--|| |.||+..++++
T Consensus        17 fne~~kRLdeieekvef~~~Ev~Qr~GkkiGRDIGILYGlVIGlil~~i   65 (75)
T COG4064          17 FNEIHKRLDEIEEKVEFVNGEVYQRIGKKIGRDIGILYGLVIGLILCMI   65 (75)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            3455666666666666554 46678888888998787 55665555544

>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G

Probab=85.66  E-value=1.1  Score=31.63  Aligned_cols=49  Identities=27%  Similarity=0.480  Sum_probs=33.7

Q ss_pred             hhhccchhhhcccchhhHH-HhhhhhhhccccchHHHHHHHHHHHHHHHH
Q 026388          186 FGDVQGKVKVLSDKFPIIR-GLLGSIRRRRSRDTLILAAVIAGCTLFLII  234 (239)
Q Consensus       186 l~~~~~rl~~~~~~lp~~n-~li~~I~~R~~rd~iIl~~vI~~ci~~~l~  234 (239)
                      ++.+.+|+..+..++-..| .+.+++..+--||-=|++|++..+++++++
T Consensus        14 ~~~i~~rLd~iEeKVEf~~~E~~Qr~Gkk~GRDiGIlYG~viGlli~~~~   63 (70)
T TIGR01149        14 FNEVMKRLDEIEEKVEFVNGEVAQRIGKKVGRDIGILYGLVIGLILFLIY   63 (70)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHH
Confidence            4566778888888776555 467888888889988885554444444433

coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.

>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport

Probab=85.42  E-value=1.8  Score=37.92  Aligned_cols=87  Identities=8%  Similarity=0.113  Sum_probs=59.6

Q ss_pred             hhHHHHHhhhhccCchhHHHHHhhhhh-------hhhhhhcccchhhhccchhhhcccchhhHHHhhhhhhhccccchHH
Q 026388          148 RMQILRERAAIHGSITHIDDVISQAQT-------TRTVLGSQRALFGDVQGKVKVLSDKFPIIRGLLGSIRRRRSRDTLI  220 (239)
Q Consensus       148 ~~~ll~E~~~L~~S~~~ld~~l~~a~~-------t~~~L~~QR~~l~~~~~rl~~~~~~lp~~n~li~~I~~R~~rd~iI  220 (239)
                      .+..++.++.++.  ...+++++.|.+       ...-|.....+|..+...+..-...+...+.=+..+..+... .|.
T Consensus       154 ~e~~l~~~~~~QE--~L~~em~~La~~LK~~s~~~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~~~~-~~~  230 (251)
T PF09753_consen  154 LEKILQHHRNLQE--DLTEEMLSLARQLKENSLAFSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSKSWG-CWT  230 (251)
T ss_pred             HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-HHH
Confidence            4566666666654  466777777755       346788888888888888877777887777777777655444 555


Q ss_pred             HHHHHHHHHHHHHHHHh
Q 026388          221 LAAVIAGCTLFLIIYWL  237 (239)
Q Consensus       221 l~~vI~~ci~~~l~y~~  237 (239)
                      +.+++++|++|++.|+|
T Consensus       231 ~~~i~~v~~~Fi~mvl~  247 (251)
T PF09753_consen  231 WLMIFVVIIVFIMMVLF  247 (251)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            56666666666655555

They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].

>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional

Probab=84.79  E-value=1.2  Score=32.03  Aligned_cols=48  Identities=21%  Similarity=0.444  Sum_probs=33.2

Q ss_pred             hhhccchhhhcccchhhHH-HhhhhhhhccccchHHHHHHHHHHHHHHH
Q 026388          186 FGDVQGKVKVLSDKFPIIR-GLLGSIRRRRSRDTLILAAVIAGCTLFLI  233 (239)
Q Consensus       186 l~~~~~rl~~~~~~lp~~n-~li~~I~~R~~rd~iIl~~vI~~ci~~~l  233 (239)
                      ++.+.+||.++..++-..| .+.+++..+--||-=||+|++..++++++
T Consensus        17 ~~~i~~rLD~iEeKVEftn~Ei~Qr~GkkvGRDiGIlYG~viGlli~~i   65 (77)
T PRK01026         17 FKEIQKRLDEIEEKVEFTNAEIFQRIGKKVGRDIGILYGLVIGLLIVLV   65 (77)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHH
Confidence            4566777888887776555 46788888888998888555444444433

>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]

Probab=83.16  E-value=7.7  Score=33.70  Aligned_cols=16  Identities=13%  Similarity=0.455  Sum_probs=8.5

Q ss_pred             HHHHHHHHHHHHHhcC
Q 026388          224 VIAGCTLFLIIYWLSK  239 (239)
Q Consensus       224 vI~~ci~~~l~y~~sK  239 (239)
                      ++.+++++++||||+|
T Consensus       277 ~~~~~~~~~~~~~~kR  292 (292)
T PF01544_consen  277 GLMILVAILLYWWFKR  292 (292)
T ss_dssp             HHHHHHHHHHHCCTTS
T ss_pred             HHHHHHHHHHHHheeC
Confidence            3334444556666665

CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.

>PRK09546 zntB zinc transporter; Reviewed

Probab=82.71  E-value=31  Score=31.14  Aligned_cols=18  Identities=6%  Similarity=0.108  Sum_probs=10.1

Q ss_pred             hHHHHHHHHHHhhcchhh
Q 026388          104 ILHEFTQEFRRIKGNINS  121 (239)
Q Consensus       104 ~L~d~~~ef~r~~~~i~~  121 (239)
                      .+..++++.-+++..+..
T Consensus       183 ~l~~lrr~l~~lrr~l~p  200 (324)
T PRK09546        183 ELALLRKQLIVMRRYMAP  200 (324)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            355666666666555433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	239
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 3e-05
 Identities = 37/204 (18%), Positives = 66/204 (32%), Gaps = 62/204 (30%)

Query: 55  GSGRSW------------KSMEMEI-----------QSLLEKLLDINDAMSRCAASAAPT 91
           GSG++W              M+ +I           +++LE L  +              
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL------LYQIDPNW 213

Query: 92  TSVTQKLARHRDILHEFTQEFRRIKGNINSMREHAE-LLSSVRDDISEYKASGSMSPRMQ 150
           TS +   +  +  +H    E RR+       + +   LL  V  ++   KA  + +   +
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLL----KSKPYENCLL--VLLNVQNAKAWNAFNLSCK 267

Query: 151 IL---RERAAIHGSITHIDDVISQAQTTRTVLGSQRALFGDVQGK---VKVLSDKF---- 200
           IL   R +      +T   D +S A TT   L          + K   +K L  +     
Sbjct: 268 ILLTTRFK-----QVT---DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319

Query: 201 -------PIIRGLLG-SIRRRRSR 216
                  P    ++  SIR   + 
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLAT 343

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	239
2nps_C	81	Vesicle transport through interaction with T- snar	98.75
1gl2_C	65	VTI1B, vesicle transport V-snare protein VTI1-like	98.49
1vcs_A	102	Vesicle transport through interaction with T- snar	98.25
2qyw_A	102	Vesicle transport through interaction with T-SNAR	98.09
3onj_A	97	T-snare VTI1; helix, HABC, protein transport; 1.92	98.02
1n7s_C	79	SNAP-25A; neuronal snare protein complex, four hel	97.54
1nhl_A	54	Synaptosomal-associated protein 23; snare, coiled-	96.93
2kog_A	119	Vesicle-associated membrane protein 2; synaptobrev	92.99
3hd7_A	91	Vesicle-associated membrane protein 2; membrane pr	91.86
3b5n_C	70	Protein transport protein SEC9; snare complex, syn	91.61
1l4a_C	83	S-SNAP25 fusion protein; snare, snare complex, mem	90.43
2l34_A	33	TYRO protein tyrosine kinase-binding protein; immu	87.79
4dnd_A	130	Syntaxin-10, SYN10; structural genomics, protein s	83.56
4b19_A	30	PEPA1; toxin, toxin apoptotic peptide, apoptosis;	81.5

>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}

Probab=98.75  E-value=3.2e-09  Score=76.73  Aligned_cols=70  Identities=10%  Similarity=0.099  Sum_probs=64.7

Q ss_pred             hHHHHHhhhhccCchhHHHHHhhhhhhhhhhhcccchhhhccchhhhcccchhhHHHhhhhhhhccccch
Q 026388          149 MQILRERAAIHGSITHIDDVISQAQTTRTVLGSQRALFGDVQGKVKVLSDKFPIIRGLLGSIRRRRSRDT  218 (239)
Q Consensus       149 ~~ll~E~~~L~~S~~~ld~~l~~a~~t~~~L~~QR~~l~~~~~rl~~~~~~lp~~n~li~~I~~R~~rd~  218 (239)
                      +.|-+..++|++|.+.+.++.++|.+|+.+|+.||++|.++++++.+++..+..+..+|+.|.+|..+|+
T Consensus        12 ~~L~rt~~~L~~s~r~~~ETE~iG~~il~~L~~QRE~l~~~~~~l~~~d~~l~~s~k~l~~M~rr~~~nK   81 (81)
T 2nps_C           12 ERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANLGKSSRILTGMLRRIIQNR   81 (81)
T ss_dssp             HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhCC
Confidence            4677888899999999999999999999999999999999999999999999999999999999988775

>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1

Probab=98.49  E-value=2.1e-08  Score=69.41  Aligned_cols=63  Identities=17%  Similarity=0.207  Sum_probs=56.7

Q ss_pred             HHHHHhhhhccCchhHHHHHhhhhhhhhhhhcccchhhhccchhhhcccchhhHHHhhhhhhh
Q 026388          150 QILRERAAIHGSITHIDDVISQAQTTRTVLGSQRALFGDVQGKVKVLSDKFPIIRGLLGSIRR  212 (239)
Q Consensus       150 ~ll~E~~~L~~S~~~ld~~l~~a~~t~~~L~~QR~~l~~~~~rl~~~~~~lp~~n~li~~I~~  212 (239)
                      +|-+..++|++|.+.+.++.++|.+|+.+|+.||+.|.+++.++.+++..+..+..+|+.|.+
T Consensus         3 rL~~t~~~l~~s~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~l~~s~k~L~~m~R   65 (65)
T 1gl2_C            3 HMNRATQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRSMSR   65 (65)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhHHHHHHHHHHhhcC
Confidence            456778899999999999999999999999999999999999999999999999999998864

>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1

Probab=98.25  E-value=7.6e-07  Score=66.91  Aligned_cols=59  Identities=14%  Similarity=0.244  Sum_probs=48.9

Q ss_pred             cchhhHHHHHHHHHHHhchhhHHhhhhhccCCc--hhHHHHHHhhhhhHHHHHHHHHHhhc
Q 026388           59 SWKSMEMEIQSLLEKLLDINDAMSRCAASAAPT--TSVTQKLARHRDILHEFTQEFRRIKG  117 (239)
Q Consensus        59 ~~~~l~~eIe~~L~~l~~li~~m~~~~~~~~~s--~s~~~~l~R~re~L~d~~~ef~r~~~  117 (239)
                      +.+....+|+..|++++++|++|+.++++.||+  +.+..++..|+..|..++++|++++.
T Consensus        35 erk~~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk~elk~~~~   95 (102)
T 1vcs_A           35 EKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRSRI   95 (102)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHHHTHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            678899999999999999999999999988765  35556777788888777777777654

>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V

Probab=98.09  E-value=3.5e-06  Score=63.23  Aligned_cols=86  Identities=16%  Similarity=0.112  Sum_probs=61.4

Q ss_pred             hhcHHHHHHHHhhhcccccccchhhhhhhhhhccCCcccCCCCCCCCCCcchhhHHHHHHHHHHHhchhhHHhhhhhccC
Q 026388           10 ESGWEELRKEARKIEGDLDVKLSSYAKLGARFTQGGYVDTGSPTVGSGRSWKSMEMEIQSLLEKLLDINDAMSRCAASAA   89 (239)
Q Consensus        10 ~~~w~~lr~~ar~LE~~id~kL~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~eIe~~L~~l~~li~~m~~~~~~~~   89 (239)
                      +.-|+..-.+...|-.+|..+|.......                 ..++.+....+|+..|++++++|+||+.++++.|
T Consensus        14 SelFe~YE~df~~l~~~i~~kl~~i~~~~-----------------~~e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p   76 (102)
T 2qyw_A           14 SEHFEKLHEIFRGLLEDLQGVPERLLGTA-----------------GTEEKKKLVRDFDEKQQEANETLAEMEEELRYAP   76 (102)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTCC-----------------CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccC-----------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            45788888999999888888887643221                 1136788999999999999999999999999886


Q ss_pred             Cc--hhHHHHHHhhhhhHHHHHHHH
Q 026388           90 PT--TSVTQKLARHRDILHEFTQEF  112 (239)
Q Consensus        90 ~s--~s~~~~l~R~re~L~d~~~ef  112 (239)
                      |+  +.+..++..||..|..+++||
T Consensus        77 ~s~R~~~~~klr~Yk~dL~~lk~el  101 (102)
T 2qyw_A           77 LTFRNPMMSKLRNYRKDLAKLHREV  101 (102)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            43  233334555555554444444

>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C

Probab=98.02  E-value=5.1e-06  Score=61.79  Aligned_cols=57  Identities=11%  Similarity=0.250  Sum_probs=43.8

Q ss_pred             cchhhHHHHHHHHHHHhchhhHHhhhhhcc--CCc--hhHHHHHHhhhhhHHH-HHHHHHHh
Q 026388           59 SWKSMEMEIQSLLEKLLDINDAMSRCAASA--APT--TSVTQKLARHRDILHE-FTQEFRRI  115 (239)
Q Consensus        59 ~~~~l~~eIe~~L~~l~~li~~m~~~~~~~--~~s--~s~~~~l~R~re~L~d-~~~ef~r~  115 (239)
                      +.+....+|+..|+++.++|++|+.++++.  ||+  +.+..++..|+..|.. ++++|+++
T Consensus        31 ~Rk~~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~dl~~~lk~~lk~l   92 (97)
T 3onj_A           31 QRNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKKTIQSDIKRPLQSL   92 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            678999999999999999999999999988  543  2344456666666666 66666655

>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A

Probab=97.54  E-value=3.6e-05  Score=55.08  Aligned_cols=62  Identities=8%  Similarity=0.064  Sum_probs=57.3

Q ss_pred             HHHHHhhhhccCchhHHHHHhhhhhhhhhhhcccchhhhccchhhhcccchhhHHHhhhhhh
Q 026388          150 QILRERAAIHGSITHIDDVISQAQTTRTVLGSQRALFGDVQGKVKVLSDKFPIIRGLLGSIR  211 (239)
Q Consensus       150 ~ll~E~~~L~~S~~~ld~~l~~a~~t~~~L~~QR~~l~~~~~rl~~~~~~lp~~n~li~~I~  211 (239)
                      .+-+..+++++|.+++.++.+.|.+|+..|+.||+.|.+++.+|.++++.+..+.++++.|.
T Consensus        17 ~~~~s~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a~k~L~~m~   78 (79)
T 1n7s_C           17 LADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKDLG   78 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHHHHHHHHhhhc
Confidence            34466689999999999999999999999999999999999999999999999999998875

>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1

Probab=96.93  E-value=0.0002  Score=47.40  Aligned_cols=52  Identities=10%  Similarity=0.104  Sum_probs=47.1

Q ss_pred             ccCchhHHHHHhhhhhhhhhhhcccchhhhccchhhhcccchhhHHHhhhhh
Q 026388          159 HGSITHIDDVISQAQTTRTVLGSQRALFGDVQGKVKVLSDKFPIIRGLLGSI  210 (239)
Q Consensus       159 ~~S~~~ld~~l~~a~~t~~~L~~QR~~l~~~~~rl~~~~~~lp~~n~li~~I  210 (239)
                      +++.+++.+..+.|..|+..|..||+.|.++.+.|.++++.+....+.++.|
T Consensus         3 ~~~~~l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~~a~k~L~~m   54 (54)
T 1nhl_A            3 RRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTLTEL   54 (54)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHHHHHHHHhcC
Confidence            4677889999999999999999999999999999999999998888877643

>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}

Probab=92.99  E-value=0.19  Score=38.21  Aligned_cols=83  Identities=11%  Similarity=0.197  Sum_probs=57.5

Q ss_pred             HHhhhhccCchhHHHHHhhhhhhhhhhhcccchhhhccchhhhcccchh----hHHHhhhhhhhccccchHHHHHHHHHH
Q 026388          153 RERAAIHGSITHIDDVISQAQTTRTVLGSQRALFGDVQGKVKVLSDKFP----IIRGLLGSIRRRRSRDTLILAAVIAGC  228 (239)
Q Consensus       153 ~E~~~L~~S~~~ld~~l~~a~~t~~~L~~QR~~l~~~~~rl~~~~~~lp----~~n~li~~I~~R~~rd~iIl~~vI~~c  228 (239)
                      .+.++|...+..+|++-++-....+.+-+..+.|....+|-.++...--    ..+.+-+++-.+..+=.+|++++++++
T Consensus        30 ~~~d~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~~F~k~A~kl~rkmwwkn~K~~iii~~iv~ii  109 (119)
T 2kog_A           30 TSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAII  109 (119)
T ss_dssp             SSCSHHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567888999999999999999999999999988888877776655332    444555555555555555666555444


Q ss_pred             HHHHHHH
Q 026388          229 TLFLIIY  235 (239)
Q Consensus       229 i~~~l~y  235 (239)
                      +++++++
T Consensus       110 i~iIi~~  116 (119)
T 2kog_A          110 LIIIIVY  116 (119)
T ss_dssp             HHHHHHH
T ss_pred             HHHhhhh
Confidence            4444433

>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A

Probab=91.86  E-value=0.11  Score=37.67  Aligned_cols=79  Identities=13%  Similarity=0.254  Sum_probs=39.9

Q ss_pred             hhccCchhHHHHHhhhhhhhhhhhcccchhhhccchhhhccc---chh-hHHHhhhhhhhccccchHHHHHHHHHHHHHH
Q 026388          157 AIHGSITHIDDVISQAQTTRTVLGSQRALFGDVQGKVKVLSD---KFP-IIRGLLGSIRRRRSRDTLILAAVIAGCTLFL  232 (239)
Q Consensus       157 ~L~~S~~~ld~~l~~a~~t~~~L~~QR~~l~~~~~rl~~~~~---~lp-~~n~li~~I~~R~~rd~iIl~~vI~~ci~~~  232 (239)
                      +|...+..+|++-++-....+.+-...+.|....+|-.++.+   .|- ....+=+++-.+..+=.+|+++|++++++++
T Consensus         6 ~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~rkmwwkn~K~~iii~~iv~~il~ii   85 (91)
T 3hd7_A            6 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILIII   85 (91)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444445555555555555555555555544444444333332   332 4445555566666555667766654444443


Q ss_pred             HHH
Q 026388          233 IIY  235 (239)
Q Consensus       233 l~y  235 (239)
                      ++|
T Consensus        86 ~~~   88 (91)
T 3hd7_A           86 IVY   88 (91)
T ss_dssp             HHT
T ss_pred             HHH
Confidence            333

>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1

Probab=91.61  E-value=0.066  Score=37.04  Aligned_cols=57  Identities=14%  Similarity=0.292  Sum_probs=49.6

Q ss_pred             hhhccCchhHHHHHhhhhhhhhhhhcccchhhhccchhhhcccchhhHHHhhhhhhh
Q 026388          156 AAIHGSITHIDDVISQAQTTRTVLGSQRALFGDVQGKVKVLSDKFPIIRGLLGSIRR  212 (239)
Q Consensus       156 ~~L~~S~~~ld~~l~~a~~t~~~L~~QR~~l~~~~~rl~~~~~~lp~~n~li~~I~~  212 (239)
                      ++-+++-+++.+....|..|+..|..|.+.|.++...|-.+...+.....-+..|+.
T Consensus        12 ~STrr~L~~a~e~e~~g~~Tl~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~Lk~   68 (70)
T 3b5n_C           12 ASTRNTLKMAQDAERAGMNTLGMLGHQSEQLNNVEGNLDLMKVQNKVADEKVAELKK   68 (70)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            455677788999999999999999999999999999999999988888777776653

>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1

Probab=90.43  E-value=0.045  Score=39.16  Aligned_cols=56  Identities=7%  Similarity=0.100  Sum_probs=47.1

Q ss_pred             hhhccCchhHHHHHhhhhhhhhhhhcccchhhhccchhhhcccchhhHHHhhhhhh
Q 026388          156 AAIHGSITHIDDVISQAQTTRTVLGSQRALFGDVQGKVKVLSDKFPIIRGLLGSIR  211 (239)
Q Consensus       156 ~~L~~S~~~ld~~l~~a~~t~~~L~~QR~~l~~~~~rl~~~~~~lp~~n~li~~I~  211 (239)
                      ++.+++-+++.+....|..|+..|..|++.|.++...|-.+.+.+......+..|+
T Consensus        27 ~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~Aek~L~~L~   82 (83)
T 1l4a_C           27 ESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDMKDAEKNLEGME   82 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCTTC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            45577778888999999999999999999999999999999998887777666553

>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B

Probab=87.79  E-value=0.58  Score=27.46  Aligned_cols=21  Identities=14%  Similarity=0.548  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhcC
Q 026388          219 LILAAVIAGCTLFLIIYWLSK  239 (239)
Q Consensus       219 iIl~~vI~~ci~~~l~y~~sK  239 (239)
                      +|+|.++++.++.+++|+|+|
T Consensus        12 IVvgdi~~t~~i~~~vy~~~r   32 (33)
T 2l34_A           12 IVVGDLVLTVLIALAVYFLGR   32 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCC
T ss_pred             EeHHHHHHHHHHHHHHhheec
Confidence            567888888888888888876

>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A

Probab=83.56  E-value=1.5  Score=33.71  Aligned_cols=98  Identities=10%  Similarity=0.111  Sum_probs=58.6

Q ss_pred             hcHHHHHHHHhhhcccccccchhhhhhhhhhccCCcccCCCCCCCCCCcchhhHHHHHHHHHHHhchhhHHhhhhhc--c
Q 026388           11 SGWEELRKEARKIEGDLDVKLSSYAKLGARFTQGGYVDTGSPTVGSGRSWKSMEMEIQSLLEKLLDINDAMSRCAAS--A   88 (239)
Q Consensus        11 ~~w~~lr~~ar~LE~~id~kL~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~eIe~~L~~l~~li~~m~~~~~~--~   88 (239)
                      -.|-.++.++..-=+.++..+.+|..+...           ++.++..++..+..|+...|+.++.-++.++.-+.-  .
T Consensus        27 DPF~~Vk~EVq~sl~~l~~l~~~w~~l~~~-----------~~~~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~   95 (130)
T 4dnd_A           27 DPFFVVRGEVQKAVNTARGLYQRWCELLQE-----------SAAVGREELDWTTNELRNGLRSIEWDLEDLEETIGIVEA   95 (130)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHC--------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHhhcc-----------CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            356666666655555555666666655321           111123467788888888888888888888866551  1


Q ss_pred             CCch-hH-HHHHHhhhhhHHHHHHHHHHhhcch
Q 026388           89 APTT-SV-TQKLARHRDILHEFTQEFRRIKGNI  119 (239)
Q Consensus        89 ~~s~-s~-~~~l~R~re~L~d~~~ef~r~~~~i  119 (239)
                      .|.. .. ...+.+.|..+.+.+.+...++..+
T Consensus        96 np~kF~l~~~Ei~~Rr~fV~~~r~~I~~mk~~l  128 (130)
T 4dnd_A           96 NPGKFKLPAGDLQERKVFVERMREAVQEMKDHM  128 (130)
T ss_dssp             CHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            1210 00 1348888888888888888877644

>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}

Probab=81.50  E-value=0.24  Score=28.33  Aligned_cols=19  Identities=53%  Similarity=1.167  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHHHHHHHHhc
Q 026388          220 ILAAVIAGCTLFLIIYWLS  238 (239)
Q Consensus       220 Il~~vI~~ci~~~l~y~~s  238 (239)
                      |++-||+.|++-+|-||++
T Consensus         7 iia~visGcivalF~hWL~   25 (30)
T 4b19_A            7 IIAPVISGCAIAFFSYWLS   25 (30)
T ss_dssp             STTTTHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHH
Confidence            4577889999999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	239
d1vcsa1	89	Vesicle transport v-SNARE protein Vti1-like 2 {Mou	98.48

>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Vesicle transport v-SNARE protein Vti1-like 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.48  E-value=1.3e-07  Score=67.65  Aligned_cols=58  Identities=14%  Similarity=0.274  Sum_probs=48.1

Q ss_pred             cchhhHHHHHHHHHHHhchhhHHhhhhhccCCc--hhHHHHHHhhhhhHHHHHHHHHHhh
Q 026388           59 SWKSMEMEIQSLLEKLLDINDAMSRCAASAAPT--TSVTQKLARHRDILHEFTQEFRRIK  116 (239)
Q Consensus        59 ~~~~l~~eIe~~L~~l~~li~~m~~~~~~~~~s--~s~~~~l~R~re~L~d~~~ef~r~~  116 (239)
                      +.+....+|+..|+++.++|+||+.++++.||+  +.+..++..|+..|..++++|++.+
T Consensus        28 erk~~l~~ie~~leEA~ell~qMelEvr~~p~s~R~~~~~klr~Yk~dl~~lk~elk~a~   87 (89)
T d1vcsa1          28 EKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRSR   87 (89)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            679999999999999999999999999998865  3445567777777777777777665