Citrus Sinensis ID: 026407

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------24
Protein Sequence
MAVTGVSGNSLFYRVVVSQSYPTKLVKFASVPLELQQLPRKPLCCSCDDSSSSLSSFTALSTETPPDGYRRNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRKPCGLIFRYFSPFCLAPFMIYLKELFHFCLIFSKP
Secondary Structure (PSIPRED)
ccEEcccccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccEEEEEEcccccccEEcccccccccccHHHHHHHHHHHHHcccEEEEEEEEccEEEEccccHHHHcccccccccEEEEEEEEEEEEEcccccEEEccccccccccccEEEEEcccHHHcccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccEEcccccEEEEEEEEccccccccccccccccccccccccccEEEcccccccccEEEEcccccccccccccEEEEEEcccccEEEEEEEEccccccccccccccccccHHHHHHHHHHHHHccccEEEEEEccccEEEcccHHHHHHccccccccEccccEEEEEEEEccccccccccccccccccccccEEccHHHEHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mavtgvsgnSLFYRVVVSqsyptklvkfasvplelqqlprkplccscddsssslssftalstetppdgyrrnvgiclinsskkKIFAATrihipytwqmpqggadeGEDLINAALRELREetgvtsaeflaetpywltydfplKVKQKLNrrwgtnykgqAQKWFLFKFTGKEEeinllgdgsekpefnewrwmfPEQVLERVRKPCglifryfspfclaPFMIYLKELFHFCLIFSKP
Flexible Loop (DISEMBL)
mavtgvsgnslfYRVVVSQSYPTKLVKFASVPLELQQLPRKPLCCSCDDSSSSLSSFTalstetppdgyrrnVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEflaetpywltydFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLgdgsekpefnewRWMFPEQVLERVRKPCGLIFRYFSPFCLAPFMIYLKELFHFCLIFSKP
Low Complexity Region (SEG)
MAVTGVSGNSLFYRVVVSQSYPTKLVKFASVPLELQQLPRKPlccscddsssslssFTALSTETPPDGYRRNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRKPCGLIFRYFSPFCLAPFMIYLKELFHFCLIFSKP
Disordered region (IsUnstruct)
*******GNSLFYRVVVSQSYPTKLVKFASVPLELQQLPRKPLCCSC********************GYRRNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRKPCGLIFRYFSPFCLAPFMIYLKELFHFCLIF***
Disordered Region (DISOPRED)
********NSLFYRVVVSQSYPTKLVKFASVPL*********************************DGYRRNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRKPCGLIFRYFSPFCLAPFMIYLKELFHFCLIF***
Disordered Region (DISEMBL)
MAVTGVSGNSLFYRVVVSQSYPTKLVKFASVPLELQQLPRKPLCC***************STETPPDGYRRNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRKPCGLIFRYFSPFCLAPFMIYLKELFHFCLIFSKP
Disordered Region (DISPRO)
**VTGVSGNSLFYRVVVSQSYPTKLVKFASVPLELQQLPRKPLCCSCDDSSSSLSSFTALSTETPPDGYRRNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRKPCGLIFRYFSPFCLAPFMIYLKELFHFCLIFSKP
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAVTGVSGNSLFYRVVVSQSYPTKLVKFASVPLELQQLPRKPLCCSCDDSSSSLSSFTALSTETPPDGYRRNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRKPCGLIFRYFSPFCLAPFMIYLKELFHFCLIFSKP
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	239	2.2.26 [Sep-21-2011]
Q9FNH4	227	Nudix hydrolase 27, chlor	yes	no	0.815	0.859	0.592	7e-62
Q9CAF2	216	Nudix hydrolase 26, chlor	no	no	0.719	0.796	0.603	6e-57
Q9C6Z2	175	Nudix hydrolase 25 OS=Ara	no	no	0.581	0.794	0.538	2e-38
Q2RV14	165	RNA pyrophosphohydrolase	yes	no	0.497	0.721	0.484	2e-28
B9KN59	162	RNA pyrophosphohydrolase	yes	no	0.535	0.790	0.485	8e-27
Q3IZC1	162	RNA pyrophosphohydrolase	yes	no	0.535	0.790	0.485	8e-27
A3PMX6	162	RNA pyrophosphohydrolase	yes	no	0.535	0.790	0.471	2e-26
A8LKJ8	160	RNA pyrophosphohydrolase	yes	no	0.531	0.793	0.460	8e-26
A4WWV6	162	RNA pyrophosphohydrolase	yes	no	0.535	0.790	0.478	1e-25
Q3SVH3	170	RNA pyrophosphohydrolase	yes	no	0.502	0.705	0.5	7e-25

>sp|Q9FNH4|NUD27_ARATH Nudix hydrolase 27, chloroplastic OS=Arabidopsis thaliana GN=NUDT27 PE=1 SV=1

 Score =  236 bits (603), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 125/211 (59%), Positives = 153/211 (72%), Gaps = 16/211 (7%)

Query: 17  VSQSYPTKLVKFASVPLELQQLPR------KPLCCSCDDSSSSLSSFTALSTETPPDGYR 70
           + +S  +  + F+S P++   L +      KPL       S +LSS  A + E+PP GYR
Sbjct: 9   IGKSAISVHLDFSSFPVKFSCLKQFSVSSPKPLVVL----SVALSS-PARTVESPPVGYR 63

Query: 71  RNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFL 130
           +NVGICL+ S  +KIF A++IHIP TWQMPQGGADEGEDL NAA RELREETGVTSAEF+
Sbjct: 64  KNVGICLV-SPCRKIFTASKIHIPDTWQMPQGGADEGEDLRNAAFRELREETGVTSAEFI 122

Query: 131 AETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNE 190
           AE P WLTYDFP +VK KLNR+W T+YKGQAQKWFLFKFTGKEEEINLLGDG+ KPEF  
Sbjct: 123 AEIPNWLTYDFPREVKDKLNRKWRTSYKGQAQKWFLFKFTGKEEEINLLGDGTAKPEFKV 182

Query: 191 WRWMFPEQVLERV---RKPC-GLIFRYFSPF 217
           W WM PEQV+E     ++P    + + F+P+
Sbjct: 183 WSWMLPEQVIEHAVYFKRPVYEHVIKQFNPY 213

Mediates the hydrolysis of some nucleoside diphosphate derivatives. Can use diadenosine 5',5'''-P(1)P(5) pentaphosphate (Ap(5)A) as substrates.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 6EC: .EC: 1EC: .EC: -

>sp|Q9CAF2|NUD26_ARATH Nudix hydrolase 26, chloroplastic OS=Arabidopsis thaliana GN=NUDT26 PE=1 SV=1

 Score =  220 bits (561), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 111/184 (60%), Positives = 137/184 (74%), Gaps = 12/184 (6%)

Query: 19  QSYPTKLVKFASVPLELQQLPRKPLCCSCDDSS-SSLSSFTALSTETPPDGYRRNVGICL 77
           ++YP+K +KF+S+P              C  S  SS S+    S E+PP+GYRRNVG+CL
Sbjct: 22  RNYPSKPIKFSSLPF----------LHRCRKSRVSSSSARCCSSMESPPEGYRRNVGVCL 71

Query: 78  INSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWL 137
           +NSSKK IF A+R+ IP  WQMPQGG DEGED   A +REL+EETGV SAE LAE P+W+
Sbjct: 72  MNSSKK-IFTASRLDIPSAWQMPQGGIDEGEDPRVAVMRELKEETGVHSAEILAEAPHWI 130

Query: 138 TYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPE 197
           TYDFP  V++KL  RWG+++KGQAQKWFL KFTGK+EEINLLGDG+EKPEF EW W  P+
Sbjct: 131 TYDFPPDVREKLKVRWGSDWKGQAQKWFLLKFTGKDEEINLLGDGTEKPEFGEWSWTSPD 190

Query: 198 QVLE 201
           QV+E
Sbjct: 191 QVVE 194

Mediates the hydrolysis of some nucleoside diphosphate derivatives. Can use diadenosine 5',5'''-P(1)P(5) pentaphosphate (Ap(5)A), diadenosine 5',5'''-P(1)P(4) tetraphosphate (Ap(4)A) and diadenosine 5',5'''-P(1)P(3) triphosphate (Ap(3)A) as substrates.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: 7

>sp|Q9C6Z2|NUD25_ARATH Nudix hydrolase 25 OS=Arabidopsis thaliana GN=NUDT25 PE=1 SV=1

 Score =  159 bits (402), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 77/143 (53%), Positives = 102/143 (71%), Gaps = 4/143 (2%)

Query: 63  ETPPDGYRRNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREET 122
           E  P GYR NVG+CLINS    +F A+R+++P  WQMPQGG ++GED  +AA+REL+EET
Sbjct: 2   ENLPPGYRPNVGVCLINSDNL-VFVASRLNVPGAWQMPQGGIEDGEDPKSAAMRELQEET 60

Query: 123 GVTSAEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEE--EINLLG 180
           GV SAE ++E P WLTYDFP  VK K+NR WG  + GQAQKW+L +    E+  EINL  
Sbjct: 61  GVVSAEIVSEVPNWLTYDFPPAVKAKVNRLWGGEWHGQAQKWYLVRLRNDEDEKEINLAN 120

Query: 181 DGSEKPEFNEWRWMFPEQVLERV 203
           + ++  EF EW+W  PE+V+E+ 
Sbjct: 121 NEADS-EFAEWKWAKPEEVVEQA 142

Mediates the hydrolysis of diadenosine 5',5''-P(1)P(4) tetraphosphate (Ap(4)A), a signaling molecule involved in regulation of DNA replication and repair.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: 7

>sp|Q2RV14|RPPH_RHORT RNA pyrophosphohydrolase OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=rppH PE=3 SV=1

 Score =  126 bits (316), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 61/126 (48%), Positives = 82/126 (65%), Gaps = 7/126 (5%)

Query: 69  YRRNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAE 128
           YR+ VGI LIN+ + ++F A R+  P  WQMPQGG D GED   AA RE+ EE G  +A 
Sbjct: 14  YRQGVGIMLINA-RGQVFVARRLDSPEAWQMPQGGIDAGEDPETAAWREMEEEIGTRNAL 72

Query: 129 FLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEF 188
            L ET  WL YD P +++ +L   WG  ++GQ QKWF F+FTG++ +INL    +  PEF
Sbjct: 73  LLGETAGWLGYDLPEELRGRL---WGGRFQGQRQKWFAFRFTGQDADINL---ATAHPEF 126

Query: 189 NEWRWM 194
           + WRW+
Sbjct: 127 DAWRWV 132

Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage.

Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) (taxid: 269796)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|B9KN59|RPPH_RHOSK RNA pyrophosphohydrolase OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=rppH PE=3 SV=1

 Score =  120 bits (301), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 67/138 (48%), Positives = 89/138 (64%), Gaps = 10/138 (7%)

Query: 69  YRRNVGICLINSSKKKIFAATRIHIPY-TWQMPQGGADEGEDLINAALRELREETGVTS- 126
           YR  VGI LIN  +  IFA  RI  P   WQMPQGG DEGE    AALREL EETG+ + 
Sbjct: 12  YRPCVGIVLINR-EGLIFAGQRIDSPVPAWQMPQGGIDEGEKPREAALRELWEETGIPAE 70

Query: 127 -AEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEK 185
             EF+A+ P W+TYD P ++   L R WG  Y+GQ QKWFL+++ G +EE+   G G++ 
Sbjct: 71  RVEFVAKAPDWVTYDLPPEL---LGRVWGGKYRGQRQKWFLYRYLGTDEEV---GIGTDH 124

Query: 186 PEFNEWRWMFPEQVLERV 203
            EF+ WRW+  E+++  +
Sbjct: 125 AEFSCWRWIGAEEMVAAI 142

Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage.

Rhodobacter sphaeroides (strain KD131 / KCTC 12085) (taxid: 557760)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q3IZC1|RPPH_RHOS4 RNA pyrophosphohydrolase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=rppH PE=3 SV=1

 Score =  120 bits (301), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 67/138 (48%), Positives = 89/138 (64%), Gaps = 10/138 (7%)

Query: 69  YRRNVGICLINSSKKKIFAATRIHIPY-TWQMPQGGADEGEDLINAALRELREETGVTS- 126
           YR  VGI LIN  +  IFA  RI  P   WQMPQGG DEGE    AALREL EETG+ + 
Sbjct: 12  YRPCVGIVLINR-EGLIFAGQRIDSPVPAWQMPQGGIDEGEKPREAALRELWEETGIPAE 70

Query: 127 -AEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEK 185
             EF+A+ P W+TYD P ++   L R WG  Y+GQ QKWFL+++ G +EE+   G G++ 
Sbjct: 71  RVEFVAKAPDWVTYDLPPEL---LGRVWGGKYRGQRQKWFLYRYLGTDEEV---GIGTDH 124

Query: 186 PEFNEWRWMFPEQVLERV 203
            EF+ WRW+  E+++  +
Sbjct: 125 AEFSCWRWIGAEEMVAAI 142

Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage.

Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) (taxid: 272943)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|A3PMX6|RPPH_RHOS1 RNA pyrophosphohydrolase OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=rppH PE=3 SV=1

 Score =  119 bits (298), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 65/138 (47%), Positives = 89/138 (64%), Gaps = 10/138 (7%)

Query: 69  YRRNVGICLINSSKKKIFAATRIHIPY-TWQMPQGGADEGEDLINAALRELREETGVTS- 126
           YR  VGI LIN  +  IFA  RI  P   WQMPQGG DEGE    AALREL EETG+ + 
Sbjct: 12  YRPCVGIVLINR-EGLIFAGQRIDSPVPAWQMPQGGIDEGEKPREAALRELWEETGIPAE 70

Query: 127 -AEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEK 185
             EF+A+ P W+TYD P ++   L R WG  Y+GQ QKWFL+++ G ++E+ +   G++ 
Sbjct: 71  RVEFVAKAPDWVTYDLPPEL---LGRVWGGKYRGQRQKWFLYRYLGTDDEVGI---GTDH 124

Query: 186 PEFNEWRWMFPEQVLERV 203
            EF+ WRW+  E+++  +
Sbjct: 125 AEFSCWRWIGAEEMVAAI 142

Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage.

Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) (taxid: 349101)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|A8LKJ8|RPPH_DINSH RNA pyrophosphohydrolase OS=Dinoroseobacter shibae (strain DFL 12) GN=rppH PE=3 SV=1

 Score =  117 bits (292), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 64/139 (46%), Positives = 87/139 (62%), Gaps = 12/139 (8%)

Query: 69  YRRNVGICLINSSKKKIFAATRI--HIPYTWQMPQGGADEGEDLINAALRELREETGVT- 125
           YR+ VG+ L + + + +F   R    +P  WQMPQGG ++GED   AALREL EETGV  
Sbjct: 11  YRKCVGVVLWDGAGR-VFTGQRYDSELP-AWQMPQGGIEDGEDARTAALRELVEETGVAV 68

Query: 126 -SAEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSE 184
              E LAETP W+ YD P ++   + R W   YKGQAQ+W L KF G + +IN+    ++
Sbjct: 69  EKVEVLAETPDWIKYDLPPEI---VPRIWKGRYKGQAQRWVLMKFLGSDADINI---ETK 122

Query: 185 KPEFNEWRWMFPEQVLERV 203
            PEF+EWRW+ P  VL+ +
Sbjct: 123 HPEFSEWRWLEPASVLDSI 141

Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage.

Dinoroseobacter shibae (strain DFL 12) (taxid: 398580)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|A4WWV6|RPPH_RHOS5 RNA pyrophosphohydrolase OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=rppH PE=3 SV=1

 Score =  116 bits (291), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 66/138 (47%), Positives = 85/138 (61%), Gaps = 10/138 (7%)

Query: 69  YRRNVGICLINSSKKKIFAATRIHIPY-TWQMPQGGADEGEDLINAALRELREETGVTS- 126
           YR  VGI LIN  +  IFA  RI  P   WQMPQGG D  E    AALREL+EETG+   
Sbjct: 12  YRPCVGIVLINR-EGLIFAGQRIDSPVPAWQMPQGGIDADEKPRQAALRELQEETGIPED 70

Query: 127 -AEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEK 185
             EF+A+ P W+TYD P  +   L R WG  Y+GQ QKWFLF++ G +E+I   G  +E 
Sbjct: 71  LVEFVAKAPEWVTYDLPPDL---LGRVWGGKYRGQRQKWFLFRYLGTDEQI---GIATEH 124

Query: 186 PEFNEWRWMFPEQVLERV 203
            EF+ WRW+  E+++  +
Sbjct: 125 AEFSCWRWIGAEEMVASI 142

Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage.

Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) (taxid: 349102)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q3SVH3|RPPH_NITWN RNA pyrophosphohydrolase OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=rppH PE=3 SV=1

 Score =  114 bits (285), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 66/132 (50%), Positives = 76/132 (57%), Gaps = 12/132 (9%)

Query: 69  YRRNVGICLINSSKKKIFAATRIHI-----PYTWQMPQGGADEGEDLINAALRELREETG 123
           YR  VG+ LIN  +  +F   R  +      Y WQMPQGG D GED   AA REL EET 
Sbjct: 9   YRTCVGMMLINE-RGLVFVGRRAGVEQVDDSYVWQMPQGGVDPGEDTWLAAKRELYEETS 67

Query: 124 VTSAEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLL--GD 181
           V S E LAE P WLTYD P  V     R W   Y+GQ QKW+  +F G++ EIN+   GD
Sbjct: 68  VRSIEKLAEIPDWLTYDIPRVVA---GRAWKGRYRGQRQKWYAVRFIGEDNEINIANPGD 124

Query: 182 GSEKPEFNEWRW 193
           G  KPEF  WRW
Sbjct: 125 G-HKPEFTAWRW 135

Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage.

Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) (taxid: 323098)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	239
255583580	238	(Di)nucleoside polyphosphate hydrolase,	0.803	0.806	0.652	3e-68
224140030	244	predicted protein [Populus trichocarpa]	0.761	0.745	0.663	3e-65
224088083	243	predicted protein [Populus trichocarpa]	0.811	0.798	0.607	1e-62
15240003	227	nudix hydrolase 27 [Arabidopsis thaliana	0.815	0.859	0.592	4e-60
297806657	227	hypothetical protein ARALYDRAFT_487443 [	0.661	0.696	0.687	2e-59
119720754	228	bis(5'-nucleosy1)-tetraphosphatase [Bras	0.602	0.631	0.751	5e-59
357442813	202	Nudix hydrolase [Medicago truncatula] gi	0.715	0.846	0.605	2e-58
388510334	202	unknown [Medicago truncatula]	0.715	0.846	0.605	2e-58
1888557	199	diadenosine 5',5'''-P1,P4-tetraphosphate	0.677	0.814	0.612	8e-58
2564253	218	diadenosine 5',5'''-P1,P4-tetraphosphate	0.719	0.788	0.598	7e-57

>gi|255583580|ref|XP_002532546.1| (Di)nucleoside polyphosphate hydrolase, putative [Ricinus communis] gi|223527735|gb|EEF29840.1| (Di)nucleoside polyphosphate hydrolase, putative [Ricinus communis]

 Score =  264 bits (674), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 135/207 (65%), Positives = 159/207 (76%), Gaps = 15/207 (7%)

Query: 19  QSYPTKLVKFASVPL-ELQQLPRKPLCCSCDDSSSSLSSFTALSTETPPDGYRRNVGICL 77
           ++YP+++ +F+ V L   + +P K L  S         S T LS ETPP GYR+NVGICL
Sbjct: 18  RNYPSRIGEFSGVSLVTWRNIPVK-LSVSL--------SLTVLSVETPPQGYRKNVGICL 68

Query: 78  INSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWL 137
           +N SKK IFAA+RIHIP TWQMPQGGADEGEDL +AA+RELREETGVTSAEFLAE PYW+
Sbjct: 69  VNPSKK-IFAASRIHIPDTWQMPQGGADEGEDLRHAAMRELREETGVTSAEFLAEAPYWM 127

Query: 138 TYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPE 197
           TYDFP +V+Q+LNRRWGTNYKGQAQKWFL KFTGKEEEINLLGDGSEKPEF  W WM PE
Sbjct: 128 TYDFPDQVRQRLNRRWGTNYKGQAQKWFLLKFTGKEEEINLLGDGSEKPEFKNWSWMLPE 187

Query: 198 QVLERV---RKPC-GLIFRYFSPFCLA 220
           +V+E     +KP    + + FSP+  A
Sbjct: 188 RVVELAVDFKKPVYEQVMKLFSPYLQA 214

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140030|ref|XP_002323390.1| predicted protein [Populus trichocarpa] gi|222868020|gb|EEF05151.1| predicted protein [Populus trichocarpa]

 Score =  253 bits (647), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 132/199 (66%), Positives = 149/199 (74%), Gaps = 17/199 (8%)

Query: 9   NSLFYRVVVSQSYPTKLVKFASVPLELQQLPRKPLCCSCDDSSSSLSSFTAL------ST 62
           NS  YR V S +    L KFASVPL            SC   S + S   +       S 
Sbjct: 10  NSYIYRFV-SLNCCVNLNKFASVPLS---------GSSCAAVSLTRSKRRSRRRELPPSM 59

Query: 63  ETPPDGYRRNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREET 122
           ETPPDGYRRNVGICL+N SKK IF A+RI+IPYTWQMPQGGA EGE+L NAA+RELREET
Sbjct: 60  ETPPDGYRRNVGICLVNPSKK-IFTASRINIPYTWQMPQGGAGEGEELRNAAMRELREET 118

Query: 123 GVTSAEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDG 182
           GVTSAEF+AE PYWLTYDFP + ++++NRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDG
Sbjct: 119 GVTSAEFVAEAPYWLTYDFPSQARERINRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDG 178

Query: 183 SEKPEFNEWRWMFPEQVLE 201
           SE PEF +W W+ PE+VLE
Sbjct: 179 SETPEFKDWAWLLPERVLE 197

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224088083|ref|XP_002308318.1| predicted protein [Populus trichocarpa] gi|222854294|gb|EEE91841.1| predicted protein [Populus trichocarpa]

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 130/214 (60%), Positives = 152/214 (71%), Gaps = 20/214 (9%)

Query: 17  VSQSYPTKLVKFASVPLELQQLPRKPLCCSCDDSSSSLSSFTAL------STETPPDGYR 70
           V+ + P  L KFASVPL            SC   S + S   +       S ETPPDGYR
Sbjct: 17  VTPNCPINLNKFASVPLS---------GSSCAALSLTRSRRRSRRRELPPSMETPPDGYR 67

Query: 71  RNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFL 130
           RNVGICL+NSSKK IF A RI+I  TWQMPQGGA EGEDL+ AA+RELREETGVTSAEF+
Sbjct: 68  RNVGICLVNSSKK-IFTALRINISDTWQMPQGGAGEGEDLLTAAMRELREETGVTSAEFV 126

Query: 131 AETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNE 190
           AE PYWLTYDFP + +++L+RRWGTNYKGQ QKWFLFKFTGKE+EINLLGDGSE PEF +
Sbjct: 127 AEAPYWLTYDFPPQTRERLSRRWGTNYKGQTQKWFLFKFTGKEDEINLLGDGSETPEFKD 186

Query: 191 WRWMFPEQVLERV---RKPC-GLIFRYFSPFCLA 220
           W W+ PE+VLE     +KP    + + F P+  A
Sbjct: 187 WAWLLPERVLELAVDFKKPVYEQVMKVFGPYLQA 220

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240003|ref|NP_196252.1| nudix hydrolase 27 [Arabidopsis thaliana] gi|75309234|sp|Q9FNH4.1|NUD27_ARATH RecName: Full=Nudix hydrolase 27, chloroplastic; Short=AtNUDT27; Flags: Precursor gi|13937175|gb|AAK50081.1|AF372941_1 AT5g06340/MHF15_14 [Arabidopsis thaliana] gi|9758414|dbj|BAB08956.1| diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase-like protein [Arabidopsis thaliana] gi|21360539|gb|AAM47466.1| At1g79500/T8K14_8 [Arabidopsis thaliana] gi|332003621|gb|AED91004.1| nudix hydrolase 27 [Arabidopsis thaliana]

 Score =  236 bits (603), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 125/211 (59%), Positives = 153/211 (72%), Gaps = 16/211 (7%)

Query: 17  VSQSYPTKLVKFASVPLELQQLPR------KPLCCSCDDSSSSLSSFTALSTETPPDGYR 70
           + +S  +  + F+S P++   L +      KPL       S +LSS  A + E+PP GYR
Sbjct: 9   IGKSAISVHLDFSSFPVKFSCLKQFSVSSPKPLVVL----SVALSS-PARTVESPPVGYR 63

Query: 71  RNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFL 130
           +NVGICL+ S  +KIF A++IHIP TWQMPQGGADEGEDL NAA RELREETGVTSAEF+
Sbjct: 64  KNVGICLV-SPCRKIFTASKIHIPDTWQMPQGGADEGEDLRNAAFRELREETGVTSAEFI 122

Query: 131 AETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNE 190
           AE P WLTYDFP +VK KLNR+W T+YKGQAQKWFLFKFTGKEEEINLLGDG+ KPEF  
Sbjct: 123 AEIPNWLTYDFPREVKDKLNRKWRTSYKGQAQKWFLFKFTGKEEEINLLGDGTAKPEFKV 182

Query: 191 WRWMFPEQVLERV---RKPC-GLIFRYFSPF 217
           W WM PEQV+E     ++P    + + F+P+
Sbjct: 183 WSWMLPEQVIEHAVYFKRPVYEHVIKQFNPY 213

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297806657|ref|XP_002871212.1| hypothetical protein ARALYDRAFT_487443 [Arabidopsis lyrata subsp. lyrata] gi|297317049|gb|EFH47471.1| hypothetical protein ARALYDRAFT_487443 [Arabidopsis lyrata subsp. lyrata]

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 112/163 (68%), Positives = 131/163 (80%), Gaps = 5/163 (3%)

Query: 59  ALSTETPPDGYRRNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALREL 118
           A + E+PP GYR+NVGICL+   +K IF A++IHIP TWQMPQGGADEGEDL NAA REL
Sbjct: 52  ARTVESPPVGYRKNVGICLVGPCRK-IFTASKIHIPDTWQMPQGGADEGEDLRNAAFREL 110

Query: 119 REETGVTSAEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINL 178
           REETGVTSAEF+AE P WLTYDFP +VK KLNR+W T+YKGQAQKWFLFKFTGKEEEINL
Sbjct: 111 REETGVTSAEFIAEIPNWLTYDFPREVKDKLNRKWRTSYKGQAQKWFLFKFTGKEEEINL 170

Query: 179 LGDGSEKPEFNEWRWMFPEQVLERV---RKPC-GLIFRYFSPF 217
           LGDG+ KPEF  W WM PEQV+E     ++P    + + F+P+
Sbjct: 171 LGDGTAKPEFKVWSWMLPEQVIEHAVYFKRPVYEHVIKQFNPY 213

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|119720754|gb|ABL97947.1| bis(5'-nucleosy1)-tetraphosphatase [Brassica rapa]

 Score =  233 bits (594), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 109/145 (75%), Positives = 122/145 (84%), Gaps = 1/145 (0%)

Query: 59  ALSTETPPDGYRRNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALREL 118
           A + E+PP GYR+NVGICL+ S  +KIF A++IH+P TWQMPQGGADEGEDL NAA REL
Sbjct: 52  ARTVESPPVGYRKNVGICLV-SPCRKIFTASKIHVPDTWQMPQGGADEGEDLRNAAFREL 110

Query: 119 REETGVTSAEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINL 178
           REETGVTSAEF+AE P WLTYDFP  VK KLNR+W T+YKGQAQKWFLFKFTGKEEEINL
Sbjct: 111 REETGVTSAEFIAEIPNWLTYDFPRDVKDKLNRKWRTSYKGQAQKWFLFKFTGKEEEINL 170

Query: 179 LGDGSEKPEFNEWRWMFPEQVLERV 203
           LGDG+ KPEF  W WM PEQV+E  
Sbjct: 171 LGDGTAKPEFKVWSWMLPEQVIEHA 195

Source: Brassica rapa

Species: Brassica rapa

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357442813|ref|XP_003591684.1| Nudix hydrolase [Medicago truncatula] gi|355480732|gb|AES61935.1| Nudix hydrolase [Medicago truncatula]

 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 109/180 (60%), Positives = 141/180 (78%), Gaps = 9/180 (5%)

Query: 22  PTKLVKFASVPLELQQLPRKPLCCSCDDSSSSLSSFTALSTETPPDGYRRNVGICLINSS 81
           P   + F   P +  +LP  PL  +   S+S++        E PP+GYR+NVGICLIN+ 
Sbjct: 10  PASHLSFPKYPPKYAKLPSLPLSAAWRYSTSTM--------EAPPEGYRKNVGICLINN- 60

Query: 82  KKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDF 141
           +KK+F+A+R+ IP +WQMPQGG DEGED  NAA+RELREETGVTSAE +AE P+WLTYDF
Sbjct: 61  QKKVFSASRLDIPNSWQMPQGGIDEGEDPRNAAIRELREETGVTSAEIIAEAPFWLTYDF 120

Query: 142 PLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLE 201
           P KV+++LN +WGT++KGQAQKWFLFKFTG+++EINLLGDG+EKPEF +W W+ PEQVL+
Sbjct: 121 PPKVRERLNLQWGTDWKGQAQKWFLFKFTGQDQEINLLGDGTEKPEFGQWSWISPEQVLK 180

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388510334|gb|AFK43233.1| unknown [Medicago truncatula]

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 109/180 (60%), Positives = 141/180 (78%), Gaps = 9/180 (5%)

Query: 22  PTKLVKFASVPLELQQLPRKPLCCSCDDSSSSLSSFTALSTETPPDGYRRNVGICLINSS 81
           P   + F   P +  +LP  PL  +   S+S++        E PP+GYR+NVGICLIN+ 
Sbjct: 10  PASHLSFPKYPPKYAKLPSLPLSAAWRYSTSTM--------EAPPEGYRKNVGICLINN- 60

Query: 82  KKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDF 141
           +KK+F+A+R+ IP +WQMPQGG DEGED  NAA+RELREETGVTSAE +AE P+WLTYDF
Sbjct: 61  QKKVFSASRLDIPNSWQMPQGGIDEGEDPRNAAIRELREETGVTSAEIIAEAPFWLTYDF 120

Query: 142 PLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLE 201
           P KV+++LN +WGT++KGQAQKWFLFKFTG+++EINLLGDG+EKPEF +W W+ PEQVL+
Sbjct: 121 PPKVRERLNLQWGTDWKGQAQKWFLFKFTGQDQEINLLGDGTEKPEFGQWSWISPEQVLK 180

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1888557|gb|AAC49902.1| diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase [Lupinus angustifolius]

 Score =  229 bits (584), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 112/183 (61%), Positives = 140/183 (76%), Gaps = 21/183 (11%)

Query: 19  QSYPTKLVKFASVPLELQQLPRKPLCCSCDDSSSSLSSFTALSTETPPDGYRRNVGICLI 78
           + YP+K +KF+S+ L  +       C S              S ++PP+GYRRNVGICL+
Sbjct: 17  RKYPSKFLKFSSLSLAFR------YCHS--------------SMDSPPEGYRRNVGICLM 56

Query: 79  NSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLT 138
           N+ KK IFAA+R+ IP  WQMPQGG DEGED  NAA+RELREETGVTSAE +AE PYWLT
Sbjct: 57  NNDKK-IFAASRLDIPDAWQMPQGGIDEGEDPRNAAIRELREETGVTSAEVIAEVPYWLT 115

Query: 139 YDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQ 198
           YDFP KV++KLN +WG+++KGQAQKWFLFKFTG+++EINLLGDGSEKPEF EW W+ PEQ
Sbjct: 116 YDFPPKVREKLNIQWGSDWKGQAQKWFLFKFTGQDQEINLLGDGSEKPEFGEWSWVTPEQ 175

Query: 199 VLE 201
           +++
Sbjct: 176 LID 178

Source: Lupinus angustifolius

Species: Lupinus angustifolius

Genus: Lupinus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2564253|emb|CAB17083.1| diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase [Hordeum vulgare subsp. vulgare] gi|326505782|dbj|BAJ91130.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  226 bits (576), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 109/182 (59%), Positives = 137/182 (75%), Gaps = 10/182 (5%)

Query: 40  RKPLCCSCDDSSSSLSSFTALSTETPPDGYRRNVGICLINSSKKKIFAATRIHIPYTWQM 99
           R+PL CS    +S L+ F ++  ++PP+GYR NVGICL + S  KIF+A+RI IP  WQM
Sbjct: 34  RRPLSCS----ASPLAVFASM--DSPPEGYRTNVGICLADPSLTKIFSASRIDIPTAWQM 87

Query: 100 PQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKG 159
           PQGG D GE+   AA+RELREETGV SAE +AE P WLTYDFP  VK KLN RWGTN+KG
Sbjct: 88  PQGGIDPGEEPRAAAIRELREETGVRSAEIVAEAPNWLTYDFPADVKDKLNARWGTNWKG 147

Query: 160 QAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV---RKPC-GLIFRYFS 215
           QAQKWFLF+ TG ++EINL+GDGSEKPEF+EW WM P+QV+E+    +KP      ++F+
Sbjct: 148 QAQKWFLFRLTGGDDEINLMGDGSEKPEFSEWAWMTPKQVIEKAVDFKKPVYEETLKHFA 207

Query: 216 PF 217
           P+
Sbjct: 208 PY 209

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	239
TAIR|locus:2164220	227	NUDX27 "AT5G06340" [Arabidopsi	0.661	0.696	0.693	9.3e-59
TAIR|locus:2075840	216	NUDX26 "AT3G10620" [Arabidopsi	0.744	0.824	0.581	7.8e-55
TAIR|locus:2202487	175	NUDX25 "AT1G30110" [Arabidopsi	0.577	0.788	0.542	1.6e-38
TIGR_CMR|SPO_3585	161	SPO_3585 "hydrolase, NUDIX fam	0.535	0.795	0.427	9.7e-25
UNIPROTKB|Q47Y27	171	rppH "RNA pyrophosphohydrolase	0.610	0.853	0.383	3e-21
TIGR_CMR|CPS_3625	171	CPS_3625 "(di)nucleoside polyp	0.610	0.853	0.383	3e-21
TIGR_CMR|CJE_0684	156	CJE_0684 "(di)nucleoside polyp	0.527	0.807	0.391	3.5e-20
TIGR_CMR|CBU_1551	228	CBU_1551 "MutT/nudix family pr	0.606	0.635	0.365	5.7e-20
UNIPROTKB|Q9KU53	172	rppH "RNA pyrophosphohydrolase	0.497	0.691	0.401	1.1e-18
TIGR_CMR|VC_0671	172	VC_0671 "MutT/nudix family pro	0.497	0.691	0.401	1.1e-18

TAIR|locus:2164220 NUDX27 "AT5G06340" [Arabidopsis thaliana (taxid:3702)]

 Score = 603 (217.3 bits), Expect = 9.3e-59, P = 9.3e-59
 Identities = 113/163 (69%), Positives = 132/163 (80%)

Query:    59 ALSTETPPDGYRRNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALREL 118
             A + E+PP GYR+NVGICL+ S  +KIF A++IHIP TWQMPQGGADEGEDL NAA REL
Sbjct:    52 ARTVESPPVGYRKNVGICLV-SPCRKIFTASKIHIPDTWQMPQGGADEGEDLRNAAFREL 110

Query:   119 REETGVTSAEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINL 178
             REETGVTSAEF+AE P WLTYDFP +VK KLNR+W T+YKGQAQKWFLFKFTGKEEEINL
Sbjct:   111 REETGVTSAEFIAEIPNWLTYDFPREVKDKLNRKWRTSYKGQAQKWFLFKFTGKEEEINL 170

Query:   179 LGDGSEKPEFNEWRWMFPEQVLERV---RKPC-GLIFRYFSPF 217
             LGDG+ KPEF  W WM PEQV+E     ++P    + + F+P+
Sbjct:   171 LGDGTAKPEFKVWSWMLPEQVIEHAVYFKRPVYEHVIKQFNPY 213

GO:0004081 "bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0034432 "bis(5'-adenosyl)-pentaphosphatase activity" evidence=IDA

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

TAIR|locus:2075840 NUDX26 "AT3G10620" [Arabidopsis thaliana (taxid:3702)]

 Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
 Identities = 111/191 (58%), Positives = 138/191 (72%)

Query:    19 QSYPTKLVKFASVPLELQQLPRKPXXXXXXXXXXXXXXFTALSTETPPDGYRRNVGICLI 78
             ++YP+K +KF+S+P  L +  RK                   S E+PP+GYRRNVG+CL+
Sbjct:    22 RNYPSKPIKFSSLPF-LHRC-RKSRVSSSSAR-------CCSSMESPPEGYRRNVGVCLM 72

Query:    79 NSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLT 138
             NSSKK IF A+R+ IP  WQMPQGG DEGED   A +REL+EETGV SAE LAE P+W+T
Sbjct:    73 NSSKK-IFTASRLDIPSAWQMPQGGIDEGEDPRVAVMRELKEETGVHSAEILAEAPHWIT 131

Query:   139 YDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQ 198
             YDFP  V++KL  RWG+++KGQAQKWFL KFTGK+EEINLLGDG+EKPEF EW W  P+Q
Sbjct:   132 YDFPPDVREKLKVRWGSDWKGQAQKWFLLKFTGKDEEINLLGDGTEKPEFGEWSWTSPDQ 191

Query:   199 VLERV---RKP 206
             V+E     +KP
Sbjct:   192 VVENAVEFKKP 202

GO:0004081 "bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0034432 "bis(5'-adenosyl)-pentaphosphatase activity" evidence=IDA

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

GO:0006753 "nucleoside phosphate metabolic process" evidence=IDA

GO:0008893 "guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity" evidence=IDA

TAIR|locus:2202487 NUDX25 "AT1G30110" [Arabidopsis thaliana (taxid:3702)]

 Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 77/142 (54%), Positives = 102/142 (71%)

Query:    63 ETPPDGYRRNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREET 122
             E  P GYR NVG+CLINS    +F A+R+++P  WQMPQGG ++GED  +AA+REL+EET
Sbjct:     2 ENLPPGYRPNVGVCLINSDNL-VFVASRLNVPGAWQMPQGGIEDGEDPKSAAMRELQEET 60

Query:   123 GVTSAEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEE--INLLG 180
             GV SAE ++E P WLTYDFP  VK K+NR WG  + GQAQKW+L +    E+E  INL  
Sbjct:    61 GVVSAEIVSEVPNWLTYDFPPAVKAKVNRLWGGEWHGQAQKWYLVRLRNDEDEKEINLAN 120

Query:   181 DGSEKPEFNEWRWMFPEQVLER 202
             + ++  EF EW+W  PE+V+E+
Sbjct:   121 NEADS-EFAEWKWAKPEEVVEQ 141

GO:0004081 "bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity" evidence=ISS;IDA

GO:0009507 "chloroplast" evidence=ISM

GO:0015967 "diadenosine tetraphosphate catabolic process" evidence=IDA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

GO:0006753 "nucleoside phosphate metabolic process" evidence=IDA

GO:0008893 "guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity" evidence=IDA

TIGR_CMR|SPO_3585 SPO_3585 "hydrolase, NUDIX family, NudH subfamily" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
 Identities = 59/138 (42%), Positives = 84/138 (60%)

Query:    69 YRRNVGICLINSSKKKIFAATRI-HIPYTWQMPQGGADEGEDLINAALRELREETGVTS- 126
             YR  VG+ L+N     +F   R+      WQMPQGG DE ED   AALREL EETGVT+ 
Sbjct:    11 YRPCVGVVLMNGDGF-VFVGQRMDQNTDAWQMPQGGVDEDEDPFEAALRELWEETGVTAD 69

Query:   127 -AEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEK 185
               E +AET  WL YD P  +  ++   W   Y+GQ QKW+LF+F G++++I+L    +  
Sbjct:    70 LVEMVAETDGWLPYDLPHDLVPRI---WKGRYRGQEQKWYLFRFLGRDDQIDL---ETGH 123

Query:   186 PEFNEWRWMFPEQVLERV 203
             PEF+ W+W  P++++  +
Sbjct:   124 PEFSRWKWQDPDRLVAEI 141

GO:0008152 "metabolic process" evidence=ISS

GO:0016787 "hydrolase activity" evidence=ISS

UNIPROTKB|Q47Y27 rppH "RNA pyrophosphohydrolase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 61/159 (38%), Positives = 85/159 (53%)

Query:    67 DGYRRNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTS 126
             +GYR NVGI +IN   + +F A R +  ++WQ PQGG DEGE       REL EE G+  
Sbjct:     5 EGYRANVGIVIINDMGQ-VFWARR-YGQHSWQYPQGGVDEGETAEQTMYRELHEEVGLKP 62

Query:   127 --AEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSE 184
                + +A T +WL Y  P   K+ +         GQ QKWFL K T  E  ++LL   S 
Sbjct:    63 EHVKIVASTKHWLKYKLP---KRYIRHDSKPVCIGQKQKWFLLKLTAAESSVDLLH--SS 117

Query:   185 KPEFNEWRWM---FP-EQVLERVRKPCGLIFRYFSPFCL 219
              PEF++WRW+   +P  QV+   R    ++ + F+ F L
Sbjct:   118 HPEFDDWRWVSYWYPVRQVVSFKRDVYRMVMKEFANFAL 156

GO:0015961 "diadenosine polyphosphate catabolic process" evidence=ISS

GO:0016787 "hydrolase activity" evidence=ISS

TIGR_CMR|CPS_3625 CPS_3625 "(di)nucleoside polyphosphate hydrolase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 61/159 (38%), Positives = 85/159 (53%)

Query:    67 DGYRRNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTS 126
             +GYR NVGI +IN   + +F A R +  ++WQ PQGG DEGE       REL EE G+  
Sbjct:     5 EGYRANVGIVIINDMGQ-VFWARR-YGQHSWQYPQGGVDEGETAEQTMYRELHEEVGLKP 62

Query:   127 --AEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSE 184
                + +A T +WL Y  P   K+ +         GQ QKWFL K T  E  ++LL   S 
Sbjct:    63 EHVKIVASTKHWLKYKLP---KRYIRHDSKPVCIGQKQKWFLLKLTAAESSVDLLH--SS 117

Query:   185 KPEFNEWRWM---FP-EQVLERVRKPCGLIFRYFSPFCL 219
              PEF++WRW+   +P  QV+   R    ++ + F+ F L
Sbjct:   118 HPEFDDWRWVSYWYPVRQVVSFKRDVYRMVMKEFANFAL 156

GO:0015961 "diadenosine polyphosphate catabolic process" evidence=ISS

GO:0016787 "hydrolase activity" evidence=ISS

GO:0016818 "hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides" evidence=ISS

TIGR_CMR|CJE_0684 CJE_0684 "(di)nucleoside polyphosphate hydrolase" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 54/138 (39%), Positives = 81/138 (58%)

Query:    69 YRRNVGICLINSS---KKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVT 125
             YR NV   +++SS   + KIF A R  +   WQ PQGG D+GE + NA  REL+EE G  
Sbjct:     7 YRPNVAAIVLSSSYPFECKIFIAKRSDMDNIWQFPQGGIDKGESVKNALFRELKEEIGTD 66

Query:   126 SAEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEK 185
               E +AE P WL+YDFP K+ +K+       Y GQ QK+FL +       IN+    ++ 
Sbjct:    67 EVEIIAEYPEWLSYDFPSKIVKKMYP-----YDGQIQKYFLVRLK-HGATINI---NTKH 117

Query:   186 PEFNEWRWMFPEQVLERV 203
             PEF++++++  +Q+ E +
Sbjct:   118 PEFDDYQFVSVKQIFEMI 135

GO:0006139 "nucleobase-containing compound metabolic process" evidence=ISS

GO:0016818 "hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides" evidence=ISS

TIGR_CMR|CBU_1551 CBU_1551 "MutT/nudix family protein" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 57/156 (36%), Positives = 87/156 (55%)

Query:    68 GYRRNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSA 127
             G+R  VG+ ++N   + ++   R+  P  WQ PQGG    E L  A  REL EE G++  
Sbjct:    76 GFRLGVGMVIMNRQGELLWGR-RVGNPDAWQFPQGGLLPNETLREALNRELDEEVGLSPH 134

Query:   128 E--FLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEK 185
             +  +L ET  W++Y  P K ++  +R  G    GQ QKWFL +FTGK++ I+L  D   +
Sbjct:   135 DVIYLRETRQWISYRLPKKFRRPEHR--GPVCIGQRQKWFLLQFTGKDDAISL--DHCSQ 190

Query:   186 PEFNEWRWM---FP-EQVLERVRKPCGLIFRYFSPF 217
             PEF++WRW+   +P + V+E  R     +   F+ F
Sbjct:   191 PEFDQWRWVDYWYPVDHVVEFKRDVYQKVLTEFAEF 226

GO:0006139 "nucleobase-containing compound metabolic process" evidence=ISS

GO:0016818 "hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides" evidence=ISS

UNIPROTKB|Q9KU53 rppH "RNA pyrophosphohydrolase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 53/132 (40%), Positives = 74/132 (56%)

Query:    67 DGYRRNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTS 126
             DGYR NVGI + N+  + +F A R +  ++WQ PQGG D+GE    A  REL EE G+T 
Sbjct:     5 DGYRLNVGIVICNNHGQ-VFWAKR-YGQHSWQFPQGGIDDGESPEQAMFRELYEEVGLTK 62

Query:   127 AEF--LAETPYWLTYDFPLKVKQKLNRRWGTNYK--GQAQKWFLFKFTGKEEEINLLGDG 182
              +   +A + +WL Y  P ++      RW +     GQ QKWFL +    E +IN+    
Sbjct:    63 KDVKVIATSRHWLRYKLPKRLV-----RWDSQPVCIGQKQKWFLLRLECDESKINMQRGS 117

Query:   183 SEKPEFNEWRWM 194
             S  PEF+ WRW+
Sbjct:   118 S--PEFDGWRWV 127

GO:0003824 "catalytic activity" evidence=ISS

GO:0006281 "DNA repair" evidence=ISS

TIGR_CMR|VC_0671 VC_0671 "MutT/nudix family protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 53/132 (40%), Positives = 74/132 (56%)

Query:    67 DGYRRNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTS 126
             DGYR NVGI + N+  + +F A R +  ++WQ PQGG D+GE    A  REL EE G+T 
Sbjct:     5 DGYRLNVGIVICNNHGQ-VFWAKR-YGQHSWQFPQGGIDDGESPEQAMFRELYEEVGLTK 62

Query:   127 AEF--LAETPYWLTYDFPLKVKQKLNRRWGTNYK--GQAQKWFLFKFTGKEEEINLLGDG 182
              +   +A + +WL Y  P ++      RW +     GQ QKWFL +    E +IN+    
Sbjct:    63 KDVKVIATSRHWLRYKLPKRLV-----RWDSQPVCIGQKQKWFLLRLECDESKINMQRGS 117

Query:   183 SEKPEFNEWRWM 194
             S  PEF+ WRW+
Sbjct:   118 S--PEFDGWRWV 127

GO:0003824 "catalytic activity" evidence=ISS

GO:0006281 "DNA repair" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FNH4	NUD27_ARATH	3, ., 6, ., 1, ., -	0.5924	0.8158	0.8590	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.1	0.921
3rd Layer	3.6.1.17	0.914
3rd Layer	3.6.1.52	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	239
cd03671	147	cd03671, Ap4A_hydrolase_plant_like, Diadenosine te	3e-61
PRK00714	156	PRK00714, PRK00714, RNA pyrophosphohydrolase; Revi	7e-56
pfam00293	133	pfam00293, NUDIX, NUDIX domain	3e-20
COG0494	161	COG0494, MutT, NTP pyrophosphohydrolases including	4e-19
cd02883	123	cd02883, Nudix_Hydrolase, Nudix hydrolase is a sup	6e-11
cd03424	137	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase	2e-09
cd04664	129	cd04664, Nudix_Hydrolase_7, Members of the Nudix h	5e-09
cd04670	127	cd04670, Nudix_Hydrolase_12, Members of the Nudix	3e-08
cd03428	130	cd03428, Ap4A_hydrolase_human_like, Diadenosine te	9e-08
cd03673	131	cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate	2e-07
cd04685	133	cd04685, Nudix_Hydrolase_26, Members of the Nudix	5e-07
cd04681	130	cd04681, Nudix_Hydrolase_22, Members of the Nudix	6e-06
COG1051	145	COG1051, COG1051, ADP-ribose pyrophosphatase [Nucl	7e-06
PRK10776	129	PRK10776, PRK10776, nucleoside triphosphate pyroph	7e-06
cd04684	128	cd04684, Nudix_Hydrolase_25, Contains a crystal st	8e-06
cd04683	120	cd04683, Nudix_Hydrolase_24, Members of the Nudix	9e-06
cd04680	120	cd04680, Nudix_Hydrolase_21, Members of the Nudix	2e-05
cd03674	138	cd03674, Nudix_Hydrolase_1, Members of the Nudix h	3e-05
cd04676	129	cd04676, Nudix_Hydrolase_17, Members of the Nudix	4e-05
cd04686	131	cd04686, Nudix_Hydrolase_27, Members of the Nudix	5e-05
cd04673	122	cd04673, Nudix_Hydrolase_15, Members of the Nudix	1e-04
cd03675	134	cd03675, Nudix_Hydrolase_2, Contains a crystal str	1e-04
cd04694	143	cd04694, Nudix_Hydrolase_35, Members of the Nudix	2e-04
cd04671	123	cd04671, Nudix_Hydrolase_13, Members of the Nudix	3e-04
PRK09438	148	PRK09438, nudB, dihydroneopterin triphosphate pyro	3e-04
cd04699	129	cd04699, Nudix_Hydrolase_39, Members of the Nudix	4e-04
cd04682	122	cd04682, Nudix_Hydrolase_23, Members of the Nudix	5e-04
cd04690	118	cd04690, Nudix_Hydrolase_31, Members of the Nudix	6e-04
cd04666	122	cd04666, Nudix_Hydrolase_9, Members of the Nudix h	7e-04
cd04665	118	cd04665, Nudix_Hydrolase_8, Members of the Nudix h	8e-04
cd04662	126	cd04662, Nudix_Hydrolase_5, Members of the Nudix h	0.001
cd04691	117	cd04691, Nudix_Hydrolase_32, Members of the Nudix	0.002
cd04667	112	cd04667, Nudix_Hydrolase_10, Members of the Nudix	0.002
cd04669	121	cd04669, Nudix_Hydrolase_11, Members of the Nudix	0.003
cd03426	157	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse)	0.004

>gnl|CDD|239643 cd03671, Ap4A_hydrolase_plant_like, Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

 Score =  188 bits (480), Expect = 3e-61
 Identities = 71/138 (51%), Positives = 87/138 (63%), Gaps = 8/138 (5%)

Query: 68  GYRRNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVT-- 125
            YR NVG+ L N    K+F   RI  P  WQ PQGG DEGED   AALREL EETG+   
Sbjct: 1   PYRPNVGVVLFNE-DGKVFVGRRIDTPGAWQFPQGGIDEGEDPEQAALRELEEETGLDPD 59

Query: 126 SAEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEK 185
           S E +AE P WL YD P ++K K    WG  Y+GQ QKWFLF+FTG + EI+L     E 
Sbjct: 60  SVEIIAEIPDWLRYDLPPELKLK---IWGGRYRGQEQKWFLFRFTGDDSEIDLNAP--EH 114

Query: 186 PEFNEWRWMFPEQVLERV 203
           PEF+EWRW+  E++ + +
Sbjct: 115 PEFDEWRWVPLEELPDLI 132

Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally similar to the other members of the nudix superfamily with some degree of variations. Several regions in the sequences are poorly defined and substrate and metal binding sites are only predicted based on kinetic studies. Length = 147

>gnl|CDD|234820 PRK00714, PRK00714, RNA pyrophosphohydrolase; Reviewed

 Score =  175 bits (446), Expect = 7e-56
 Identities = 64/140 (45%), Positives = 82/140 (58%), Gaps = 9/140 (6%)

Query: 66  PDGYRRNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVT 125
            DGYR NVGI L+N  + ++F   RI   ++WQ PQGG D GE    A  REL EE G+ 
Sbjct: 4   DDGYRPNVGIILLNR-QGQVFWGRRIGQGHSWQFPQGGIDPGETPEQAMYRELYEEVGLR 62

Query: 126 S--AEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGS 183
               E LAET  WL YD P    ++L RR    Y+GQ QKWFL + TG + EINL  + +
Sbjct: 63  PEDVEILAETRDWLRYDLP----KRLVRRSKGVYRGQKQKWFLLRLTGDDSEINL--NTT 116

Query: 184 EKPEFNEWRWMFPEQVLERV 203
             PEF+ WRW+     L++V
Sbjct: 117 SHPEFDAWRWVSYWYPLDQV 136

Length = 156

>gnl|CDD|215841 pfam00293, NUDIX, NUDIX domain

 Score = 82.9 bits (205), Expect = 3e-20
 Identities = 40/141 (28%), Positives = 56/141 (39%), Gaps = 23/141 (16%)

Query: 69  YRRNVGICLINSSKKKIFAATRIHIPY---TWQMPQGGADEGEDLINAALRELREETGVT 125
            RR VG+ L+N    ++    R   P     W++P G  + GE    AA+REL EETG+ 
Sbjct: 1   RRRAVGVVLLNE-DGEVLLVRRSRPPVFPGLWELPGGKVEPGESPEEAAVRELEEETGLR 59

Query: 126 SAEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEK 185
               L      L Y  P                G+    FL +  G E E     D    
Sbjct: 60  VL--LLLLLGVLEYPAP------------GRDGGEHVHVFLAELLGGEPEPQPNED---- 101

Query: 186 PEFNEWRWMFPEQVLERVRKP 206
            E +E RW+  E++LE +   
Sbjct: 102 -EVSEVRWVPLEELLELLLAG 121

Length = 133

>gnl|CDD|223568 COG0494, MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]

 Score = 81.0 bits (199), Expect = 4e-19
 Identities = 28/145 (19%), Positives = 54/145 (37%), Gaps = 11/145 (7%)

Query: 69  YRRNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLIN-AALRELREETGVTSA 127
               V + +      ++  A R      W++P G  + GE+L   AA REL EETG+   
Sbjct: 10  RDVAVAVLVGRDGPGEVLLAQRRDDGGLWELPGGKVEPGEELPEEAAARELEEETGLR-- 67

Query: 128 EFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPE 187
             + +    L  +FP       +   G++  G+  + F          + + G  +   E
Sbjct: 68  --VKDERLELLGEFP------PSPGDGSSVGGREHRVFFVAEVDDSLAVAIEGLSAPSEE 119

Query: 188 FNEWRWMFPEQVLERVRKPCGLIFR 212
             +  W+  +++   V     +   
Sbjct: 120 LEDLEWVPLDELAALVLAEDQVKRD 144

Length = 161

>gnl|CDD|239217 cd02883, Nudix_Hydrolase, Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 57.9 bits (140), Expect = 6e-11
 Identities = 29/137 (21%), Positives = 50/137 (36%), Gaps = 22/137 (16%)

Query: 71  RNVGICLINSSKKKIFAATRIHIPY-TWQMPQGGADEGEDLINAALRELREETGVTSAEF 129
             VG  +++    ++    R   P   W++P GG + GE L  AA+RE+REETG+     
Sbjct: 1   VAVGAVILDE-DGRVLLVRRADSPGGLWELPGGGVEPGETLEEAAIREVREETGLDVDVL 59

Query: 130 LAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFN 189
                     + P + +  +               F+F       E           E +
Sbjct: 60  --RLLGVYEVESPDEGEHAVV--------------FVFLARLVGGEP----TLLPPDEIS 99

Query: 190 EWRWMFPEQVLERVRKP 206
           E RW+  +++      P
Sbjct: 100 EVRWVTLDELPALALSP 116

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzymes. Substrate specificity is used to define child families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. This superfamily consists of at least nine families: IPP (isopentenyl diphosphate) isomerase, ADP ribose pyrophosphatase, mutT pyrophosphohydrolase, coenzyme-A pyrophosphatase, MTH1-7,8-dihydro-8-oxoguanine-triphosphatase, diadenosine tetraphosphate hydrolase, NADH pyrophosphatase, GDP-mannose hydrolase and the c-terminal portion of the mutY adenine glycosylase. Length = 123

>gnl|CDD|239516 cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate

 Score = 54.0 bits (131), Expect = 2e-09
 Identities = 15/36 (41%), Positives = 20/36 (55%)

Query: 94  PYTWQMPQGGADEGEDLINAALRELREETGVTSAEF 129
            +  ++P G  D GED   AA REL EETG  + + 
Sbjct: 28  GWLLELPAGLIDPGEDPEEAARRELEEETGYEAGDL 63

Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirement for metal ions. NUDT5 forms a homodimer. Length = 137

>gnl|CDD|240022 cd04664, Nudix_Hydrolase_7, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 52.7 bits (127), Expect = 5e-09
 Identities = 25/112 (22%), Positives = 37/112 (33%), Gaps = 21/112 (18%)

Query: 97  WQMPQGGADEGEDLINAALRELREETG--VTSAEFLAETPYWLTYDFPLKVKQKLNRRWG 154
           WQ   GG ++GE    AA RE+ EETG        L         +F         R W 
Sbjct: 30  WQSVTGGIEDGESPAEAARREVAEETGLDPERLTLLDRGASIAFVEFTD-----NGRVWT 84

Query: 155 TNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRKP 206
            +        F F     +  + L        E + + W+ PE+    +   
Sbjct: 85  EH-------PFAFHLPS-DAVVTLDW------EHDAFEWVPPEEAAALLLWE 122

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 129

>gnl|CDD|240027 cd04670, Nudix_Hydrolase_12, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 50.4 bits (121), Expect = 3e-08
 Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 1/58 (1%)

Query: 73  VGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFL 130
           VG  ++N   + +    R   P  W++P G  D GED+ + A+RE+ EETG+   EF+
Sbjct: 5   VGGLVLNEKNEVLVVQERNKTPNGWKLPGGLVDPGEDIFDGAVREVLEETGI-DTEFV 61

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 127

>gnl|CDD|239520 cd03428, Ap4A_hydrolase_human_like, Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

 Score = 49.2 bits (118), Expect = 9e-08
 Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 19/115 (16%)

Query: 92  HIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQKLNR 151
                W  P+G  + GED + AALRE  EETG+T+ +      +  T ++ ++ K K   
Sbjct: 24  ASYGHWDFPKGHVEPGEDDLEAALRETEEETGITAEQLFIVLGFKETLNYQVRGKLKTVT 83

Query: 152 RWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRKP 206
                       +FL +    + E+ L        E  ++RW+  E+ L+ +   
Sbjct: 84  ------------YFLAELRP-DVEVKL------SEEHQDYRWLPYEEALKLLTYE 119

Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and catalytic site, and a required divalent cation, Ap4A hydrolase is structurally similar to the other members of the nudix superfamily with some degree of variation. Several regions in the sequences are poorly defined and substrate and metal binding sites are only predicted based on kinetic studies. Length = 130

>gnl|CDD|239645 cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily

 Score = 48.4 bits (116), Expect = 2e-07
 Identities = 28/112 (25%), Positives = 45/112 (40%), Gaps = 22/112 (19%)

Query: 97  WQMPQGGADEGEDLINAALRELREETGVTSA--EFLAETPYWLTYDFPLKVKQKLNRRWG 154
           W +P+G  + GE    AA+RE+ EETG+ +   + L    YW +       K        
Sbjct: 29  WSLPKGKLEPGETPPEAAVREVEEETGIRAEVGDPLGTIRYWFSSSGKRVHKT------- 81

Query: 155 TNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRKP 206
                    W+L +  G E             E +E RW+ P++  +R+  P
Sbjct: 82  -------VHWWLMRALGGEFTPQP------DEEVDEVRWLPPDEARDRLSYP 120

Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Length = 131

>gnl|CDD|240041 cd04685, Nudix_Hydrolase_26, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 47.4 bits (113), Expect = 5e-07
 Identities = 18/32 (56%), Positives = 21/32 (65%)

Query: 97  WQMPQGGADEGEDLINAALRELREETGVTSAE 128
           W  P GG + GE    AA RELREETG+T A+
Sbjct: 30  WFTPGGGVEPGESPEQAARRELREETGITVAD 61

Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 133

>gnl|CDD|240037 cd04681, Nudix_Hydrolase_22, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 43.9 bits (104), Expect = 6e-06
 Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 4/68 (5%)

Query: 76  CLINSSKKKIFAATRIHIPY--TWQMPQGGADEGEDLINAALRELREETG--VTSAEFLA 131
            LI +   ++    R   P   T  +P G  D GE    A +RE+REETG  VT   +L 
Sbjct: 6   VLILNEDGELLVVRRAREPGKGTLDLPGGFVDPGESAEEALIREIREETGLKVTELSYLF 65

Query: 132 ETPYWLTY 139
             P    Y
Sbjct: 66  SLPNTYPY 73

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 130

>gnl|CDD|223979 COG1051, COG1051, ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]

 Score = 44.3 bits (105), Expect = 7e-06
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 73  VGICLINSSKKKIFAATRIHIPY--TWQMPQGGADEGEDLINAALRELREETGV 124
           V +  +     +I    R + P    W +P G  + GE L  AA REL+EETG+
Sbjct: 11  VAVGALIVRNGRILLVRRANEPGAGYWALPGGFVEIGETLEEAARRELKEETGL 64

Length = 145

>gnl|CDD|182721 PRK10776, PRK10776, nucleoside triphosphate pyrophosphohydrolase; Provisional

 Score = 43.8 bits (104), Expect = 7e-06
 Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 9/74 (12%)

Query: 73  VGICLINSSKKKIFAATR---IHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEF 129
           VGI  I +   +IF   R    H+   W+ P G  + GE    A +REL+EE G+T    
Sbjct: 8   VGI--IRNPNNEIFITRRAADAHMAGKWEFPGGKIEAGETPEQALIRELQEEVGITVQHA 65

Query: 130 -LAETPYWLTYDFP 142
            L E    L Y+FP
Sbjct: 66  TLFEK---LEYEFP 76

Length = 129

>gnl|CDD|240040 cd04684, Nudix_Hydrolase_25, Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function

 Score = 43.8 bits (104), Expect = 8e-06
 Identities = 14/32 (43%), Positives = 18/32 (56%)

Query: 94  PYTWQMPQGGADEGEDLINAALRELREETGVT 125
              W +P GG + GE    A  RE+ EETG+T
Sbjct: 24  EGRWDLPGGGIEPGESPEEALHREVLEETGLT 55

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 128

>gnl|CDD|240039 cd04683, Nudix_Hydrolase_24, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 43.5 bits (103), Expect = 9e-06
 Identities = 16/29 (55%), Positives = 21/29 (72%)

Query: 97  WQMPQGGADEGEDLINAALRELREETGVT 125
           W +P G  ++GED + AA+RE REE GVT
Sbjct: 28  WALPAGHLEKGEDAVTAAVREAREEIGVT 56

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 120

>gnl|CDD|240036 cd04680, Nudix_Hydrolase_21, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query: 97  WQMPQGGADEGEDLINAALRELREETGVT 125
           W +P GG + GE    AA REL EE G+ 
Sbjct: 25  WYLPGGGLERGETFAEAARRELLEELGIR 53

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 120

>gnl|CDD|239646 cd03674, Nudix_Hydrolase_1, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 42.0 bits (99), Expect = 3e-05
 Identities = 17/28 (60%), Positives = 19/28 (67%)

Query: 97  WQMPQGGADEGEDLINAALRELREETGV 124
           W  P G  D  E L+ AALRELREETG+
Sbjct: 28  WLQPGGHIDPDESLLEAALRELREETGI 55

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 138

>gnl|CDD|240032 cd04676, Nudix_Hydrolase_17, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 41.5 bits (98), Expect = 4e-05
 Identities = 13/29 (44%), Positives = 19/29 (65%)

Query: 97  WQMPQGGADEGEDLINAALRELREETGVT 125
           W +P G  + GE   + A+RE+REETG+ 
Sbjct: 27  WALPGGAVEPGESPADTAVREVREETGLD 55

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 129

>gnl|CDD|240042 cd04686, Nudix_Hydrolase_27, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 41.6 bits (98), Expect = 5e-05
 Identities = 15/29 (51%), Positives = 20/29 (68%)

Query: 100 PQGGADEGEDLINAALRELREETGVTSAE 128
           P GG ++GED I   +REL+EETG T+  
Sbjct: 27  PGGGVEKGEDHIEGLIRELQEETGATNIR 55

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 131

>gnl|CDD|240030 cd04673, Nudix_Hydrolase_15, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 18/32 (56%), Positives = 19/32 (59%), Gaps = 2/32 (6%)

Query: 94  PYTWQMPQGGADE-GEDLINAALRELREETGV 124
              W  P GG  E GE L  AALREL EETG+
Sbjct: 24  AGLWSFP-GGKVELGETLEQAALRELLEETGL 54

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 122

>gnl|CDD|239647 cd03675, Nudix_Hydrolase_2, Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 14/28 (50%), Positives = 17/28 (60%)

Query: 96  TWQMPQGGADEGEDLINAALRELREETG 123
            +  P G  + GE LI AA+RE  EETG
Sbjct: 25  VFNQPAGHLEPGESLIEAAVRETLEETG 52

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 134

>gnl|CDD|240050 cd04694, Nudix_Hydrolase_35, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 4/53 (7%)

Query: 77  LINSSKKKIFAATRIH----IPYTWQMPQGGADEGEDLINAALRELREETGVT 125
           L+ SS +K+    R       P  W  P G  + GE+L+ A LREL EETG+T
Sbjct: 7   LLQSSDQKLLLTRRASSLRIFPNVWVPPGGHVELGENLLEAGLRELNEETGLT 59

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 143

>gnl|CDD|240028 cd04671, Nudix_Hydrolase_13, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 39.0 bits (91), Expect = 3e-04
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 5/50 (10%)

Query: 97  WQMPQGGADEGEDLINAALRELREETG-----VTSAEFLAETPYWLTYDF 141
           W +P G  + GE +  A  RE++EETG      T      +   W  + F
Sbjct: 28  WYLPAGRMEPGETIEEAVKREVKEETGLDCEPTTLLSVEEQGGSWFRFVF 77

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 123

>gnl|CDD|236516 PRK09438, nudB, dihydroneopterin triphosphate pyrophosphatase; Provisional

 Score = 39.5 bits (93), Expect = 3e-04
 Identities = 13/28 (46%), Positives = 18/28 (64%)

Query: 97  WQMPQGGADEGEDLINAALRELREETGV 124
           WQ   G  +EGE     A+RE++EETG+
Sbjct: 33  WQSVTGSLEEGETPAQTAIREVKEETGI 60

Length = 148

>gnl|CDD|240054 cd04699, Nudix_Hydrolase_39, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 4/61 (6%)

Query: 77  LINSSKKKIFAATR----IHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAE 132
           LI     +I    R       P  W++P G  +EGE    A  RE+ EETG+T   FL  
Sbjct: 7   LIVKDVGRILILKRSKDERTAPGKWELPGGKVEEGETFEEALKREVYEETGLTVTPFLRY 66

Query: 133 T 133
            
Sbjct: 67  P 67

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 129

>gnl|CDD|240038 cd04682, Nudix_Hydrolase_23, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 38.5 bits (90), Expect = 5e-04
 Identities = 31/112 (27%), Positives = 42/112 (37%), Gaps = 24/112 (21%)

Query: 92  HIPY--TWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQKL 149
            IPY   W +P G  + GE  +   LREL EE G+T  E     P++  Y          
Sbjct: 24  GIPYPGHWDLPGGHREGGETPLECVLRELLEEIGLTLPESR--IPWFRVYPS------AS 75

Query: 150 NRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLE 201
                       +  F+   T +E+ I L GD     E    R M  E+ L 
Sbjct: 76  PPG--------TEHVFVVPLTAREDAI-LFGD-----EGQALRLMTVEEFLA 113

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 122

>gnl|CDD|240046 cd04690, Nudix_Hydrolase_31, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 38.0 bits (89), Expect = 6e-04
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 97  WQMPQGGADEGEDLINAALRELREETGVT 125
           + +P G  + GE  + A +REL EE G+ 
Sbjct: 25  FYLPGGKIEAGETPLQALIRELSEELGLD 53

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 118

>gnl|CDD|240024 cd04666, Nudix_Hydrolase_9, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 38.0 bits (89), Expect = 7e-04
 Identities = 27/110 (24%), Positives = 39/110 (35%), Gaps = 36/110 (32%)

Query: 69  YRRNVG---ICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVT 125
           YR   G   + L+ S +              W +P+GG ++ E    AA RE  EE GV 
Sbjct: 8   YRETGGEVEVLLVTSRRTG-----------RWIVPKGGPEKDESPAEAAAREAWEEAGVR 56

Query: 126 ---------SAEF----LAETPYWLTYDFPLKVKQKL---------NRRW 153
                      E+        P      FPL+V ++L          R+W
Sbjct: 57  GKIGKRPLGRFEYRKRSKNRPPRCEVAVFPLEVTEELDEWPEMHQRKRKW 106

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 122

>gnl|CDD|240023 cd04665, Nudix_Hydrolase_8, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 37.7 bits (88), Expect = 8e-04
 Identities = 13/35 (37%), Positives = 17/35 (48%)

Query: 96  TWQMPQGGADEGEDLINAALRELREETGVTSAEFL 130
            W+ P G  + GE +  AA RE+ EETG       
Sbjct: 22  GWEFPGGHVEPGETIEEAARREVWEETGAELGSLT 56

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 118

>gnl|CDD|240020 cd04662, Nudix_Hydrolase_5, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 37.1 bits (86), Expect = 0.001
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 97  WQMPQGGADEGEDLINAALRELREETGVT-SAEFL 130
           W +P+G   EGED + AA RE  EETG      F+
Sbjct: 35  WSIPKGEYTEGEDPLLAAKREFSEETGFCVDGPFI 69

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 126

>gnl|CDD|240047 cd04691, Nudix_Hydrolase_32, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 37.1 bits (86), Expect = 0.002
 Identities = 18/67 (26%), Positives = 23/67 (34%), Gaps = 11/67 (16%)

Query: 77  LINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEF-----LA 131
           L   S  K         P    +P G  + GE    A LRE++EE GV    +     L 
Sbjct: 15  LERRSLTKNAD------PGKLNIPGGHIEAGESQEEALLREVQEELGVDPLSYTYLCSLY 68

Query: 132 ETPYWLT 138
                L 
Sbjct: 69  HPTSELQ 75

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 117

>gnl|CDD|240025 cd04667, Nudix_Hydrolase_10, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 36.9 bits (86), Expect = 0.002
 Identities = 15/34 (44%), Positives = 21/34 (61%)

Query: 97  WQMPQGGADEGEDLINAALRELREETGVTSAEFL 130
           W +P G  + GE  + AA REL+EETG+   + L
Sbjct: 23  WALPGGKIEPGETPLQAARRELQEETGLQGLDLL 56

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 112

>gnl|CDD|240026 cd04669, Nudix_Hydrolase_11, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 36.3 bits (84), Expect = 0.003
 Identities = 13/29 (44%), Positives = 16/29 (55%)

Query: 97  WQMPQGGADEGEDLINAALRELREETGVT 125
           +  P GG +EGE    AA RE  EE G+ 
Sbjct: 27  YVFPGGGIEEGETPEEAAKREALEELGLD 55

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 121

>gnl|CDD|239518 cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes

 Score = 36.4 bits (85), Expect = 0.004
 Identities = 20/63 (31%), Positives = 24/63 (38%), Gaps = 17/63 (26%)

Query: 100 PQGGADEG-EDLINAALRELREETGV--TSAEFLAE------------TPY--WLTYDFP 142
           P G  D G ED +  ALRE  EE G+   S E L              TP    +    P
Sbjct: 37  PGGKVDPGDEDPVATALREAEEEIGLPPDSVEVLGRLPPYYTRSGFVVTPVVGLVPPPLP 96

Query: 143 LKV 145
           L +
Sbjct: 97  LVL 99

The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules. Length = 157

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	239
cd03671	147	Ap4A_hydrolase_plant_like Diadenosine tetraphospha	99.88
PRK00714	156	RNA pyrophosphohydrolase; Reviewed	99.87
PRK09438	148	nudB dihydroneopterin triphosphate pyrophosphatase	99.82
PF00293	134	NUDIX: NUDIX domain; InterPro: IPR000086 The gener	99.78
cd04679	125	Nudix_Hydrolase_20 Members of the Nudix hydrolase	99.77
cd03673	131	Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hy	99.77
cd03672	145	Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalyt	99.77
cd03430	144	GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mann	99.77
cd04696	125	Nudix_Hydrolase_37 Members of the Nudix hydrolase	99.77
cd04670	127	Nudix_Hydrolase_12 Members of the Nudix hydrolase	99.76
cd04700	142	DR1025_like DR1025 from Deinococcus radiodurans, a	99.76
PRK15434	159	GDP-mannose mannosyl hydrolase NudD; Provisional	99.76
PLN02325	144	nudix hydrolase	99.76
cd04681	130	Nudix_Hydrolase_22 Members of the Nudix hydrolase	99.76
cd03424	137	ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase)	99.76
cd04684	128	Nudix_Hydrolase_25 Contains a crystal structure of	99.75
PRK15472	141	nucleoside triphosphatase NudI; Provisional	99.75
PRK00241	256	nudC NADH pyrophosphatase; Reviewed	99.74
cd04669	121	Nudix_Hydrolase_11 Members of the Nudix hydrolase	99.74
cd04680	120	Nudix_Hydrolase_21 Members of the Nudix hydrolase	99.74
cd03675	134	Nudix_Hydrolase_2 Contains a crystal structure of	99.73
cd04678	129	Nudix_Hydrolase_19 Members of the Nudix hydrolase	99.73
cd04682	122	Nudix_Hydrolase_23 Members of the Nudix hydrolase	99.73
cd04664	129	Nudix_Hydrolase_7 Members of the Nudix hydrolase s	99.73
cd04692	144	Nudix_Hydrolase_33 Members of the Nudix hydrolase	99.72
cd03674	138	Nudix_Hydrolase_1 Members of the Nudix hydrolase s	99.72
cd04673	122	Nudix_Hydrolase_15 Members of the Nudix hydrolase	99.72
cd03428	130	Ap4A_hydrolase_human_like Diadenosine tetraphospha	99.72
cd04677	132	Nudix_Hydrolase_18 Members of the Nudix hydrolase	99.72
cd04697	126	Nudix_Hydrolase_38 Members of the Nudix hydrolase	99.72
cd04687	128	Nudix_Hydrolase_28 Members of the Nudix hydrolase	99.71
cd04671	123	Nudix_Hydrolase_13 Members of the Nudix hydrolase	99.71
cd04693	127	Nudix_Hydrolase_34 Members of the Nudix hydrolase	99.71
cd04695	131	Nudix_Hydrolase_36 Members of the Nudix hydrolase	99.71
cd04661	132	MRP_L46 Mitochondrial ribosomal protein L46 (MRP L	99.71
cd04691	117	Nudix_Hydrolase_32 Members of the Nudix hydrolase	99.71
cd04688	126	Nudix_Hydrolase_29 Members of the Nudix hydrolase	99.71
cd03426	157	CoAse Coenzyme A pyrophosphatase (CoAse), a member	99.7
cd03429	131	NADH_pyrophosphatase NADH pyrophosphatase, a membe	99.7
cd02885	165	IPP_Isomerase Isopentenyl diphosphate (IPP) isomer	99.7
cd04676	129	Nudix_Hydrolase_17 Members of the Nudix hydrolase	99.7
cd03427	137	MTH1 MutT homolog-1 (MTH1) is a member of the Nudi	99.7
cd04683	120	Nudix_Hydrolase_24 Members of the Nudix hydrolase	99.7
cd04666	122	Nudix_Hydrolase_9 Members of the Nudix hydrolase s	99.69
PRK03759	184	isopentenyl-diphosphate delta-isomerase; Provision	99.69
PRK15393	180	NUDIX hydrolase YfcD; Provisional	99.68
PRK10546	135	pyrimidine (deoxy)nucleoside triphosphate pyrophos	99.68
cd04694	143	Nudix_Hydrolase_35 Members of the Nudix hydrolase	99.68
cd04686	131	Nudix_Hydrolase_27 Members of the Nudix hydrolase	99.67
cd04689	125	Nudix_Hydrolase_30 Members of the Nudix hydrolase	99.67
PRK10776	129	nucleoside triphosphate pyrophosphohydrolase; Prov	99.67
cd04667	112	Nudix_Hydrolase_10 Members of the Nudix hydrolase	99.67
cd04690	118	Nudix_Hydrolase_31 Members of the Nudix hydrolase	99.67
KOG3084	345	consensus NADH pyrophosphatase I of the Nudix fami	99.67
cd04699	129	Nudix_Hydrolase_39 Members of the Nudix hydrolase	99.66
cd04672	123	Nudix_Hydrolase_14 Members of the Nudix hydrolase	99.66
PRK11762	185	nudE adenosine nucleotide hydrolase NudE; Provisio	99.66
cd04685	133	Nudix_Hydrolase_26 Members of the Nudix hydrolase	99.66
TIGR00052	185	nudix-type nucleoside diphosphatase, YffH/AdpP fam	99.65
COG2816	279	NPY1 NTP pyrophosphohydrolases containing a Zn-fin	99.65
COG1051	145	ADP-ribose pyrophosphatase [Nucleotide transport a	99.65
cd04511	130	Nudix_Hydrolase_4 Members of the Nudix hydrolase s	99.65
PRK10729	202	nudF ADP-ribose pyrophosphatase NudF; Provisional	99.65
TIGR02150	158	IPP_isom_1 isopentenyl-diphosphate delta-isomerase	99.64
TIGR00586	128	mutt mutator mutT protein. All proteins in this fa	99.64
PRK05379	340	bifunctional nicotinamide mononucleotide adenylylt	99.61
cd03425	124	MutT_pyrophosphohydrolase The MutT pyrophosphohydr	99.59
KOG2839	145	consensus Diadenosine and diphosphoinositol polyph	99.57
cd03676	180	Nudix_hydrolase_3 Members of the Nudix hydrolase s	99.57
PRK15009	191	GDP-mannose pyrophosphatase NudK; Provisional	99.56
cd02883	123	Nudix_Hydrolase Nudix hydrolase is a superfamily o	99.56
PRK10707	190	putative NUDIX hydrolase; Provisional	99.54
cd04662	126	Nudix_Hydrolase_5 Members of the Nudix hydrolase s	99.54
PRK08999	312	hypothetical protein; Provisional	99.48
cd04665	118	Nudix_Hydrolase_8 Members of the Nudix hydrolase s	99.47
PLN02709	222	nudix hydrolase	99.47
TIGR02705	156	nudix_YtkD nucleoside triphosphatase YtkD. The fun	99.46
cd04663	126	Nudix_Hydrolase_6 Members of the Nudix hydrolase s	99.44
cd04674	118	Nudix_Hydrolase_16 Members of the Nudix hydrolase	99.44
PLN02552	247	isopentenyl-diphosphate delta-isomerase	99.36
PLN03143	291	nudix hydrolase; Provisional	99.36
KOG3041	225	consensus Nucleoside diphosphate-sugar hydrolase o	99.34
COG0494	161	MutT NTP pyrophosphohydrolases including oxidative	99.32
cd03670	186	ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase)	99.31
PLN02791	770	Nudix hydrolase homolog	99.3
cd03431	118	DNA_Glycosylase_C DNA glycosylase (MutY in bacteri	99.05
KOG3069	246	consensus Peroxisomal NUDIX hydrolase [Replication	99.0
KOG0648	295	consensus Predicted NUDIX hydrolase FGF-2 and rela	98.86
COG4119	161	Predicted NTP pyrophosphohydrolase [DNA replicatio	98.85
COG1443	185	Idi Isopentenyldiphosphate isomerase [Lipid metabo	98.82
PLN02839	372	nudix hydrolase	98.48
PF14815	114	NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3	98.26
PRK10880	350	adenine DNA glycosylase; Provisional	97.9
KOG2937	348	consensus Decapping enzyme complex, predicted pyro	97.81
KOG0142	225	consensus Isopentenyl pyrophosphate:dimethylallyl	97.77
KOG4432	405	consensus Uncharacterized NUDIX family hydrolase [	97.64
COG4112	203	Predicted phosphoesterase (MutT family) [General f	97.51
KOG4195	275	consensus Transient receptor potential-related cha	97.41
PRK13910	289	DNA glycosylase MutY; Provisional	97.18
TIGR01084	275	mutY A/G-specific adenine glycosylase. This equiva	96.68
PF13869	188	NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B	96.38
COG1194	342	MutY A/G-specific DNA glycosylase [DNA replication	96.14
KOG4432	405	consensus Uncharacterized NUDIX family hydrolase [	95.63
KOG4548	263	consensus Mitochondrial ribosomal protein L17 [Tra	95.61
KOG1689	221	consensus mRNA cleavage factor I subunit [RNA proc	94.14
KOG4313	306	consensus Thiamine pyrophosphokinase [Nucleotide t	94.05

>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.88  E-value=1.3e-21  Score=154.06  Aligned_cols=129  Identities=53%  Similarity=1.035  Sum_probs=96.3

Q ss_pred             ceeeEEEEEEeCCCCEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCcc--ceeeeccCceeeecCchhhh
Q 026407           69 YRRNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTS--AEFLAETPYWLTYDFPLKVK  146 (239)
Q Consensus        69 ~~~~v~v~i~~~~~~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~--~~~~~~~~~~~~~~~~~~~~  146 (239)
                      +|.+|++++++.++ ++||++|...++.|.+|||++|+||++.+||.||++||||+++  ..++.....+++|.+++...
T Consensus         2 ~~~~v~~ii~~~~~-~vLL~~r~~~~~~W~~PgG~~e~gE~~~~aA~REv~EEtGl~~~~~~~l~~~~~~~~y~~~~~~~   80 (147)
T cd03671           2 YRPNVGVVLFNEDG-KVFVGRRIDTPGAWQFPQGGIDEGEDPEQAALRELEEETGLDPDSVEIIAEIPDWLRYDLPPELK   80 (147)
T ss_pred             CCceEEEEEEeCCC-EEEEEEEcCCCCCEECCcCCCCCCcCHHHHHHHHHHHHHCCCcCceEEEEEcCCeeEeeChhhhh
Confidence            56789999999887 9999999876689999999999999999999999999999996  34445444556666654321


Q ss_pred             hhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh
Q 026407          147 QKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV  203 (239)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~  203 (239)
                      .   ..+.+.+.++..++|++.+......+....  .+++|+.+++|++++++.++.
T Consensus        81 ~---~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~--~~~~E~~~~~W~~~~el~~~~  132 (147)
T cd03671          81 L---KIWGGRYRGQEQKWFLFRFTGDDSEIDLNA--PEHPEFDEWRWVPLEELPDLI  132 (147)
T ss_pred             c---cccCCcCCCEEEEEEEEEecCCCccccCCC--CCCCCEeeEEeCCHHHHHHhc
Confidence            1   222223456677888888876433333321  135689999999999999987

Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally

>PRK00714 RNA pyrophosphohydrolase; Reviewed

Probab=99.87  E-value=1e-20  Score=150.45  Aligned_cols=143  Identities=43%  Similarity=0.781  Sum_probs=104.9

Q ss_pred             CceeeEEEEEEeCCCCEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccc--eeeeccCceeeecCchhh
Q 026407           68 GYRRNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSA--EFLAETPYWLTYDFPLKV  145 (239)
Q Consensus        68 ~~~~~v~v~i~~~~~~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~--~~~~~~~~~~~~~~~~~~  145 (239)
                      .++.+|++++++.++ ++||++|...++.|.+|||++++||++++||.||++||||+++.  .+......+..|.++...
T Consensus         6 ~~~~~v~~~i~~~~g-~vLL~~r~~~~~~w~~P~G~~~~gE~~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~y~~~~~~   84 (156)
T PRK00714          6 GYRPNVGIILLNRQG-QVFWGRRIGQGHSWQFPQGGIDPGETPEQAMYRELYEEVGLRPEDVEILAETRDWLRYDLPKRL   84 (156)
T ss_pred             CCCCeEEEEEEecCC-EEEEEEEcCCCCeEECCcccCCCCcCHHHHHHHHHHHHhCCCccceEEEEEcCCeEEecCcHHH
Confidence            588899999999988 99999997656999999999999999999999999999999874  334444455666666532


Q ss_pred             hhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh---cchHH-HHHHHhhhh
Q 026407          146 KQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV---RKPCG-LIFRYFSPF  217 (239)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~---~~~~~-~~~~~l~~~  217 (239)
                      ...    ....+.++..++|++........+..+  ..+++|+.+++|++++++.+++   ++.++ ++++.|...
T Consensus        85 ~~~----~~~~~~~~~~~~fl~~~~~~~~~~~l~--~~~~~E~~~~~W~~~del~~~~~~~~r~~~~~~~~~~~~~  154 (156)
T PRK00714         85 VRR----SKGVYRGQKQKWFLLRLTGDDSEINLN--TTSHPEFDAWRWVSYWYPLDQVVPFKRDVYRRVLKEFARL  154 (156)
T ss_pred             hhc----cCCcccCcEEEEEEEEecCCCccccCC--CCCCCCeeeeEeCCHHHHHHhchhhhHHHHHHHHHHHHHh
Confidence            111    133456667888888886543333332  2245699999999999999875   45555 666655443

>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional

Probab=99.82  E-value=4.5e-19  Score=139.55  Aligned_cols=133  Identities=17%  Similarity=0.305  Sum_probs=84.8

Q ss_pred             ceeeEEEEEEeCCCCEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCcc--ceeeecc-CceeeecCchhh
Q 026407           69 YRRNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTS--AEFLAET-PYWLTYDFPLKV  145 (239)
Q Consensus        69 ~~~~v~v~i~~~~~~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~--~~~~~~~-~~~~~~~~~~~~  145 (239)
                      ++.+|++++++.++ ++||++|...++.|++|||++|.|||+++||+||++||||+++  ..+.... .....+.+... 
T Consensus         6 ~~~~v~~vi~~~~~-~vLl~~r~~~~~~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~-   83 (148)
T PRK09438          6 RPVSVLVVIYTPDL-GVLMLQRADDPDFWQSVTGSLEEGETPAQTAIREVKEETGIDVLAEQLTLIDCQRSIEYEIFPH-   83 (148)
T ss_pred             CceEEEEEEEeCCC-eEEEEEecCCCCcEeCCcccCCCCCCHHHHHHHHHHHHhCcCccccceeecccccccccccchh-
Confidence            45688889998887 8999888766689999999999999999999999999999987  3322110 00011111000 


Q ss_pred             hhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhcchHH-HHHHHh
Q 026407          146 KQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRKPCG-LIFRYF  214 (239)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~-~~~~~l  214 (239)
                         ....+.........++|.+..... .  .     ...+|+.+++|++++++.++...+.. .++..+
T Consensus        84 ---~~~~~~~~~~~~~~~~f~~~~~~~-~--~-----~~~~E~~~~~W~~~~e~~~~~~~~~~~~~l~~~  142 (148)
T PRK09438         84 ---WRHRYAPGVTRNTEHWFCLALPHE-R--P-----VVLTEHLAYQWLDAREAAALTKSWSNAEAIEQL  142 (148)
T ss_pred             ---hhhccccccCCceeEEEEEecCCC-C--c-----cccCcccceeeCCHHHHHHHhcChhHHHHHHHH
Confidence               000011111233455666554321 1  1     11238899999999999998765655 555443

>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []

Probab=99.78  E-value=4.4e-18  Score=130.38  Aligned_cols=121  Identities=29%  Similarity=0.506  Sum_probs=85.3

Q ss_pred             ceeeEEEEEEeCCCCEEEEEEecCCC----CcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchh
Q 026407           69 YRRNVGICLINSSKKKIFAATRIHIP----YTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLK  144 (239)
Q Consensus        69 ~~~~v~v~i~~~~~~~vLl~~r~~~~----~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~  144 (239)
                      +|.+|++++++.++ ++||++|...+    +.|.+|||++++|||+.+||+||+.||||+++.......  ...+..+..
T Consensus         1 ~~~~v~~ii~~~~~-~vLl~~r~~~~~~~~~~~~~pgG~i~~~E~~~~aa~REl~EE~g~~~~~~~~~~--~~~~~~~~~   77 (134)
T PF00293_consen    1 WRRAVGVIIFNEDG-KVLLIKRSRSPITFPGYWELPGGGIEPGESPEEAARRELKEETGLDVSPLELLG--LFSYPSPSG   77 (134)
T ss_dssp             EEEEEEEEEEETTT-EEEEEEESTTSSSSTTEEESSEEEECTTSHHHHHHHHHHHHHHSEEEEEEEEEE--EEEEEETTT
T ss_pred             CCCEEEEEEEeCCc-EEEEEEecCCCCCCCCeEecceeeEEcCCchhhhHHhhhhhcccceecccccce--eeeecccCC
Confidence            46789999999998 99999998764    899999999999999999999999999999973222111  112221110


Q ss_pred             hhhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhcchHH
Q 026407          145 VKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRKPCG  208 (239)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~  208 (239)
                      .           ..+....+|.+............     ..|+.+++|++++++.++...+..
T Consensus        78 ~-----------~~~~~~~~~~~~~~~~~~~~~~~-----~~e~~~~~W~~~~el~~~~~~~~~  125 (134)
T PF00293_consen   78 D-----------PEGEIVIFFIAELPSEQSEIQPQ-----DEEISEVKWVPPDELLELLLNGRI  125 (134)
T ss_dssp             E-----------SSEEEEEEEEEEEEEEESECHTT-----TTTEEEEEEEEHHHHHHHHHTTHH
T ss_pred             C-----------cccEEEEEEEEEEeCCccccCCC-----CccEEEEEEEEHHHhhhchhCcch
Confidence            0           01234556666655543333332     228999999999999998755533

The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....

>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.77  E-value=3.7e-18  Score=130.37  Aligned_cols=57  Identities=28%  Similarity=0.514  Sum_probs=50.6

Q ss_pred             eeeEEEEEEeCCCCEEEEEEecCC--CCcEEcCceecCCCCCHHHHHHHHHHHHhCCccc
Q 026407           70 RRNVGICLINSSKKKIFAATRIHI--PYTWQMPQGGADEGEDLINAALRELREETGVTSA  127 (239)
Q Consensus        70 ~~~v~v~i~~~~~~~vLl~~r~~~--~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~  127 (239)
                      |..|+++|++.++ ++||++|...  +|.|.+|||++|+|||+++||+||++||||+++.
T Consensus         2 ~~~~~~~i~~~~~-~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~eaa~RE~~EEtGl~~~   60 (125)
T cd04679           2 RVGCGAAILRDDG-KLLLVKRLRAPEAGHWGIPGGKVDWMEAVEDAVVREIEEETGLSIH   60 (125)
T ss_pred             ceEEEEEEECCCC-EEEEEEecCCCCCCeEeCCeeeccCCCCHHHHHHHHHHHHHCCCcc
Confidence            5678888998877 9999988643  3899999999999999999999999999999874

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.77  E-value=7.7e-18  Score=129.01  Aligned_cols=123  Identities=24%  Similarity=0.425  Sum_probs=80.2

Q ss_pred             eeEEEEEEeCCC--CEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhhh
Q 026407           71 RNVGICLINSSK--KKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQK  148 (239)
Q Consensus        71 ~~v~v~i~~~~~--~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~  148 (239)
                      .++++++++.++  .+|||++|... +.|.||||++++|||+++||.||++||||+++..+.....  ..+.++..    
T Consensus         2 ~~a~~ii~~~~~~~~~vLl~~~~~~-~~w~~PgG~v~~gEs~~~aa~REl~EEtGl~~~~~~~~~~--~~~~~~~~----   74 (131)
T cd03673           2 LAAGGVVFRGSDGGIEVLLIHRPRG-DDWSLPKGKLEPGETPPEAAVREVEEETGIRAEVGDPLGT--IRYWFSSS----   74 (131)
T ss_pred             eeEEEEEEEccCCCeEEEEEEcCCC-CcccCCCCccCCCCCHHHHHHHHHhhhhCCceEecceEEE--EEEeccCC----
Confidence            466777776641  38999998764 8999999999999999999999999999998743321111  12222210    


Q ss_pred             cccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhcchHH-HHHH
Q 026407          149 LNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRKPCG-LIFR  212 (239)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~-~~~~  212 (239)
                            .........+|.+......  ...    ..++|+.++.|++++++.++...+.. .++.
T Consensus        75 ------~~~~~~~~~~~~~~~~~~~--~~~----~~~~E~~~~~W~~~~el~~~~~~~~~~~~l~  127 (131)
T cd03673          75 ------GKRVHKTVHWWLMRALGGE--FTP----QPDEEVDEVRWLPPDEARDRLSYPNDRELLR  127 (131)
T ss_pred             ------CCCcceEEEEEEEEEcCCC--ccc----CCCCcEEEEEEcCHHHHHHHcCCHhHHHHHH
Confidence                  0112233445555444321  111    13458899999999999988755543 4443

Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.

>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex

Probab=99.77  E-value=5.4e-18  Score=133.26  Aligned_cols=111  Identities=18%  Similarity=0.376  Sum_probs=74.4

Q ss_pred             eeEEEEEEeCCCCEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhhhcc
Q 026407           71 RNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQKLN  150 (239)
Q Consensus        71 ~~v~v~i~~~~~~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (239)
                      +.+++++++.++.++||++|... +.|+||||++|.|||+++||+||++||||+++..+.. ...+....          
T Consensus         2 p~~gaii~~~~~~~vLLvr~~~~-~~W~lPGG~ve~gEs~~~AA~REl~EETGl~v~~~~~-~~~~~~~~----------   69 (145)
T cd03672           2 PVYGAIILNEDLDKVLLVKGWKS-KSWSFPKGKINKDEDDHDCAIREVYEETGFDISKYID-KDDYIELI----------   69 (145)
T ss_pred             CeeEEEEEeCCCCEEEEEEecCC-CCEECCCccCCCCcCHHHHHHHHHHHhhCccceeccc-cceeeecc----------
Confidence            46778888876449999988754 5999999999999999999999999999998754321 11111111          


Q ss_pred             cccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh
Q 026407          151 RRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV  203 (239)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~  203 (239)
                            +.+...++|++.......  ..  .....+|+.+++|++++++.++.
T Consensus        70 ------~~~~~~~~f~~~~~~~~~--~~--~~~~~~E~~~~~Wv~~~el~~~~  112 (145)
T cd03672          70 ------IRGQNVKLYIVPGVPEDT--PF--EPKTRKEISKIEWFDIKDLPTKK  112 (145)
T ss_pred             ------cCCcEEEEEEEecCCCCc--cc--CcCChhhhheEEEeeHHHhhhhh
Confidence                  112233444443221111  11  11234589999999999999887

Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).

>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily

Probab=99.77  E-value=6e-18  Score=132.83  Aligned_cols=57  Identities=19%  Similarity=0.277  Sum_probs=50.0

Q ss_pred             eeeEEEEEEeCCCCEEEEEEecCC--CCcEEcCceecCCCCCHHHHHHHHHHHHhCCccc
Q 026407           70 RRNVGICLINSSKKKIFAATRIHI--PYTWQMPQGGADEGEDLINAALRELREETGVTSA  127 (239)
Q Consensus        70 ~~~v~v~i~~~~~~~vLl~~r~~~--~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~  127 (239)
                      ...|+++|++.++ ++||++|...  +|.|.+|||++|.|||+++||+||++||||+++.
T Consensus        12 ~v~v~~vI~~~~g-~vLl~~R~~~p~~g~w~lPGG~ve~gEs~~~aa~RE~~EE~Gl~v~   70 (144)
T cd03430          12 LVSIDLIVENEDG-QYLLGKRTNRPAQGYWFVPGGRIRKNETLTEAFERIAKDELGLEFL   70 (144)
T ss_pred             eEEEEEEEEeCCC-eEEEEEccCCCCCCcEECCCceecCCCCHHHHHHHHHHHHHCCCcc
Confidence            3577788888877 9999988653  4899999999999999999999999999999873

This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close

>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.77  E-value=5e-18  Score=129.74  Aligned_cols=56  Identities=30%  Similarity=0.444  Sum_probs=49.4

Q ss_pred             eeEEEEEEeCCCCEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccc
Q 026407           71 RNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSA  127 (239)
Q Consensus        71 ~~v~v~i~~~~~~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~  127 (239)
                      ..|++++++.++ ++||+||...+|.|.+|||+++.|||+++||+||++||||+++.
T Consensus         3 ~~v~~~i~~~~~-~iLL~r~~~~~~~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~   58 (125)
T cd04696           3 VTVGALIYAPDG-RILLVRTTKWRGLWGVPGGKVEWGETLEEALKREFREETGLKLR   58 (125)
T ss_pred             cEEEEEEECCCC-CEEEEEccCCCCcEeCCceeccCCCCHHHHHHHHHHHHhCCccc
Confidence            467778888777 89999886556999999999999999999999999999999874

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.76  E-value=9.4e-18  Score=128.48  Aligned_cols=112  Identities=24%  Similarity=0.450  Sum_probs=74.0

Q ss_pred             eeeEEEEEEeCCCCEEEEEEecCC-CCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhhh
Q 026407           70 RRNVGICLINSSKKKIFAATRIHI-PYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQK  148 (239)
Q Consensus        70 ~~~v~v~i~~~~~~~vLl~~r~~~-~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~  148 (239)
                      +..|+++++++++ ++||++|... ++.|.+|||+++.|||+++||.||++||||+++.... ....  .+..+.     
T Consensus         2 ~~~~~~~v~~~~~-~vLl~~r~~~~~~~w~~PGG~ve~gEt~~~aa~RE~~EE~Gl~~~~~~-~~~~--~~~~~~-----   72 (127)
T cd04670           2 TVGVGGLVLNEKN-EVLVVQERNKTPNGWKLPGGLVDPGEDIFDGAVREVLEETGIDTEFVS-VVGF--RHAHPG-----   72 (127)
T ss_pred             eeEEEEEEEcCCC-eEEEEEccCCCCCcEECCCccCCCCCCHHHHHHHHHHHHHCCCcceeE-EEEE--EecCCC-----
Confidence            4577888898877 8998776543 5999999999999999999999999999999873222 1110  011100     


Q ss_pred             cccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh
Q 026407          149 LNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV  203 (239)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~  203 (239)
                             . .+....+|++.+........     ...+|+.+++|++++++.+..
T Consensus        73 -------~-~~~~~~~~~~~~~~~~~~~~-----~~~~E~~~~~w~~~~el~~~~  114 (127)
T cd04670          73 -------A-FGKSDLYFICRLKPLSFDIN-----FDTSEIAAAKWMPLEEYISQP  114 (127)
T ss_pred             -------C-cCceeEEEEEEEccCcCcCC-----CChhhhheeEEEcHHHHhcch
Confidence                   0 11223445554432221111     234578899999999997654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities

Probab=99.76  E-value=8.9e-18  Score=131.50  Aligned_cols=116  Identities=20%  Similarity=0.196  Sum_probs=77.4

Q ss_pred             ceeeEEEEEEeCCCCEEEEEEecCC--CCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhh
Q 026407           69 YRRNVGICLINSSKKKIFAATRIHI--PYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVK  146 (239)
Q Consensus        69 ~~~~v~v~i~~~~~~~vLl~~r~~~--~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~  146 (239)
                      +..+|++++++.++ ++||++|...  ++.|++|||++++|||+++||+||++||||+++..+.....  ..+.+++.  
T Consensus        12 ~~~av~~vv~~~~~-~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~--~~~~~~~~--   86 (142)
T cd04700          12 EARAAGAVILNERN-DVLLVQEKGGPKKGLWHIPSGAVEDGEFPQDAAVREACEETGLRVRPVKFLGT--YLGRFDDG--   86 (142)
T ss_pred             eeeeEEEEEEeCCC-cEEEEEEcCCCCCCeEECCceecCCCCCHHHHHHHHHHHhhCceeeccEEEEE--EEEEcCCC--
Confidence            45688888898777 7888776543  48999999999999999999999999999998743321111  11112110  


Q ss_pred             hhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhcch
Q 026407          147 QKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRKP  206 (239)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~  206 (239)
                                 .....++|++........      +...+|+.+++|++++++.++..++
T Consensus        87 -----------~~~~~~~f~~~~~~~~~~------~~~~~E~~~~~w~~~~el~~~~~~g  129 (142)
T cd04700          87 -----------VLVLRHVWLAEPEGQTLA------PKFTDEIAEASFFSREDVAQLYAQG  129 (142)
T ss_pred             -----------cEEEEEEEEEEecCCccc------cCCCCCEEEEEEECHHHhhhccccc
Confidence                       011234455544322111      1123589999999999999988554

Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us

>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional

Probab=99.76  E-value=1.4e-17  Score=132.57  Aligned_cols=55  Identities=22%  Similarity=0.253  Sum_probs=48.5

Q ss_pred             eeEEEEEEeCCCCEEEEEEecCC--CCcEEcCceecCCCCCHHHHHHHHHHHHhCCcc
Q 026407           71 RNVGICLINSSKKKIFAATRIHI--PYTWQMPQGGADEGEDLINAALRELREETGVTS  126 (239)
Q Consensus        71 ~~v~v~i~~~~~~~vLl~~r~~~--~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~  126 (239)
                      .+|.++|++.++ +|||+||...  +|.|+||||++|.|||+++||+||++||||+++
T Consensus        18 ~~v~~vI~~~~g-~VLL~kR~~~~~~g~W~lPGG~VE~GEt~~~Aa~REl~EEtGl~v   74 (159)
T PRK15434         18 ISLDFIVENSRG-EFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRL   74 (159)
T ss_pred             EEEEEEEECCCC-EEEEEEccCCCCCCcEECCceecCCCCCHHHHHHHHHHHHHCCcc
Confidence            467778887767 9999998753  389999999999999999999999999999985

>PLN02325 nudix hydrolase

Probab=99.76  E-value=1.8e-17  Score=130.14  Aligned_cols=115  Identities=20%  Similarity=0.282  Sum_probs=71.9

Q ss_pred             ceeeEEEEEEeCCCCEEEEEEecCCC--CcEEcCceecCCCCCHHHHHHHHHHHHhCCccce--eeeccCceeeecCchh
Q 026407           69 YRRNVGICLINSSKKKIFAATRIHIP--YTWQMPQGGADEGEDLINAALRELREETGVTSAE--FLAETPYWLTYDFPLK  144 (239)
Q Consensus        69 ~~~~v~v~i~~~~~~~vLl~~r~~~~--~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~--~~~~~~~~~~~~~~~~  144 (239)
                      .+.++++++++. + +|||++|...+  |.|.+|||++|.|||+++||+||++||||+++..  +++.....+. ..+. 
T Consensus         8 p~~~v~~vi~~~-~-~vLL~rr~~~~~~g~W~lPGG~ve~gEs~~~aa~REv~EEtGl~v~~~~~l~~~~~~~~-~~~~-   83 (144)
T PLN02325          8 PRVAVVVFLLKG-N-SVLLGRRRSSIGDSTFALPGGHLEFGESFEECAAREVKEETGLEIEKIELLTVTNNVFL-EEPK-   83 (144)
T ss_pred             CeEEEEEEEEcC-C-EEEEEEecCCCCCCeEECCceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEecceee-cCCC-
Confidence            345666677764 5 89999987543  8999999999999999999999999999998742  2222221111 0000 


Q ss_pred             hhhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh
Q 026407          145 VKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV  203 (239)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~  203 (239)
                                  ..+....+|.+........    ....+.++..+++|+++++|....
T Consensus        84 ------------~~~~i~~~f~~~~~~~~~~----~~~~e~~e~~~~~W~~~d~Lp~~~  126 (144)
T PLN02325         84 ------------PSHYVTVFMRAVLADPSQV----PQNLEPEKCYGWDWYEWDNLPEPL  126 (144)
T ss_pred             ------------CcEEEEEEEEEEECCCCCC----CCcCCchhcCceEEEChHHCChhh
Confidence                        0111233333333222111    111234467889999999999754

>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.76  E-value=6e-18  Score=129.90  Aligned_cols=109  Identities=25%  Similarity=0.386  Sum_probs=71.2

Q ss_pred             eEEEEEEeCCCCEEEEEEecCC--CCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhhhc
Q 026407           72 NVGICLINSSKKKIFAATRIHI--PYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQKL  149 (239)
Q Consensus        72 ~v~v~i~~~~~~~vLl~~r~~~--~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~  149 (239)
                      +|+++++++++ ++||++|...  +|.|.+|||+++.|||+.+||.||++||||+++..+.........+.+.+      
T Consensus         3 av~~~i~~~~~-~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~------   75 (130)
T cd04681           3 AVGVLILNEDG-ELLVVRRAREPGKGTLDLPGGFVDPGESAEEALIREIREETGLKVTELSYLFSLPNTYPYGG------   75 (130)
T ss_pred             eEEEEEEcCCC-cEEEEEecCCCCCCcEeCCceeecCCCCHHHHHHHHHHHHhCCcccceeEEEeecceeeeCC------
Confidence            57778888877 8999988654  38999999999999999999999999999998753322111100111100      


Q ss_pred             ccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHH
Q 026407          150 NRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVL  200 (239)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~  200 (239)
                            ........+|++.+....  ..     ...+|+.+++|++++++.
T Consensus        76 ------~~~~~~~~~~~~~~~~~~--~~-----~~~~e~~~~~W~~~~el~  113 (130)
T cd04681          76 ------MEYDTLDLFFVCQVDDKP--IV-----KAPDDVAELKWVVPQDIE  113 (130)
T ss_pred             ------ceeEEEEEEEEEEeCCCC--Cc-----CChHHhheeEEecHHHCC
Confidence                  000111224445544321  11     123488999999999985

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate

Probab=99.76  E-value=1.5e-17  Score=128.90  Aligned_cols=112  Identities=22%  Similarity=0.216  Sum_probs=77.0

Q ss_pred             eeeEEEEEEeCCCCEEEEEEecCC---CCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhh
Q 026407           70 RRNVGICLINSSKKKIFAATRIHI---PYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVK  146 (239)
Q Consensus        70 ~~~v~v~i~~~~~~~vLl~~r~~~---~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~  146 (239)
                      +.+|+++++++++ ++||++|...   ++.|.+|||++|.||++++||.||++||||+++..+......    .+..   
T Consensus         2 ~~~v~v~~~~~~~-~iLl~~~~~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~----~~~~---   73 (137)
T cd03424           2 PDAVAVLPYDDDG-KVVLVRQYRPPVGGWLLELPAGLIDPGEDPEEAARRELEEETGYEAGDLEKLGSF----YPSP---   73 (137)
T ss_pred             CCEEEEEEEcCCC-eEEEEEeeecCCCCEEEEeCCccCCCCCCHHHHHHHHHHHHHCCCccceEEEeeE----ecCC---
Confidence            4678889999887 8888765432   379999999999999999999999999999998544322221    1101   


Q ss_pred             hhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh
Q 026407          147 QKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV  203 (239)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~  203 (239)
                               ........+|++..........     ..++|+.+++|++++++.++.
T Consensus        74 ---------~~~~~~~~~~~~~~~~~~~~~~-----~~~~E~~~~~w~~~~el~~~~  116 (137)
T cd03424          74 ---------GFSDERIHLFLAEDLSPGEEGL-----LDEGEDIEVVLVPLDEALELL  116 (137)
T ss_pred             ---------cccCccEEEEEEEcccccccCC-----CCCCCeeEEEEecHHHHHHHH
Confidence                     1112234455554443211111     234589999999999999988

Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem

>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function

Probab=99.75  E-value=2e-17  Score=126.16  Aligned_cols=120  Identities=18%  Similarity=0.156  Sum_probs=75.5

Q ss_pred             eEEEEEEeCCCCEEEEEEecCC--CCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhhhc
Q 026407           72 NVGICLINSSKKKIFAATRIHI--PYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQKL  149 (239)
Q Consensus        72 ~v~v~i~~~~~~~vLl~~r~~~--~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~  149 (239)
                      +|.+++++. + ++||++|...  +|.|.+|||++|.|||+++||+||++||||+++..+.........+..++..    
T Consensus         2 ~~~~ii~~~-~-~vLl~~~~~~~~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~----   75 (128)
T cd04684           2 GAYAVIPRD-G-KLLLIQKNGGPYEGRWDLPGGGIEPGESPEEALHREVLEETGLTVEIGRRLGSASRYFYSPDGD----   75 (128)
T ss_pred             eeEEEEEeC-C-EEEEEEccCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCcEeecceeeeEEEEEEECCCCC----
Confidence            456667765 5 8999998764  4999999999999999999999999999999874322111111111111100    


Q ss_pred             ccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhcchHH
Q 026407          150 NRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRKPCG  208 (239)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~  208 (239)
                            ........+|.+........     .....+|..++.|++++++......+..
T Consensus        76 ------~~~~~~~~~f~~~~~~~~~~-----~~~~~~e~~~~~W~~~~~l~~~~~~~~~  123 (128)
T cd04684          76 ------YDAHHLCVFYDARVVGGALP-----VQEPGEDSHGAAWLPLDEAIERLLSPLV  123 (128)
T ss_pred             ------eeccEEEEEEEEEEecCccc-----cCCCCCCceeeEEECHHHhhccCCCHHH
Confidence                  00122334455444432110     1123457789999999999977655533

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability

>PRK15472 nucleoside triphosphatase NudI; Provisional

Probab=99.75  E-value=3.5e-17  Score=127.72  Aligned_cols=55  Identities=29%  Similarity=0.448  Sum_probs=46.4

Q ss_pred             eeEEEEEEeCCCCEEEEEEecCC----CCcEEcCceecCCCCCHHHHHHHHHHHHhCCcc
Q 026407           71 RNVGICLINSSKKKIFAATRIHI----PYTWQMPQGGADEGEDLINAALRELREETGVTS  126 (239)
Q Consensus        71 ~~v~v~i~~~~~~~vLl~~r~~~----~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~  126 (239)
                      ..+.+.+++.++ ++||+||...    +|.|++|||++|+|||+++||.||++||||+++
T Consensus         4 r~~~~~ii~~~~-~vLl~~R~~~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~   62 (141)
T PRK15472          4 RTIVCPLIQNDG-AYLLCKMADDRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQL   62 (141)
T ss_pred             eeEEEEEEecCC-EEEEEEecccCCCCCCceeCCcccCCCCCCHHHHHHHHHHHHHCCce
Confidence            355556666666 9999988643    399999999999999999999999999999986

>PRK00241 nudC NADH pyrophosphatase; Reviewed

Probab=99.74  E-value=2e-17  Score=141.31  Aligned_cols=109  Identities=17%  Similarity=0.218  Sum_probs=73.2

Q ss_pred             eeEEEEEEeCCCCEEEEEEecCCC-CcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhhhc
Q 026407           71 RNVGICLINSSKKKIFAATRIHIP-YTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQKL  149 (239)
Q Consensus        71 ~~v~v~i~~~~~~~vLl~~r~~~~-~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~  149 (239)
                      ++|.+++.+ ++ ++||++|...+ |.|.+|||++|+|||+++||+||++||||+++..+.....  ..+.+++      
T Consensus       133 paViv~V~~-~~-~iLL~rr~~~~~g~wslPgG~vE~GEs~eeAa~REv~EEtGl~v~~~~~~~s--~~~~~p~------  202 (256)
T PRK00241        133 PCIIVAVRR-GD-EILLARHPRHRNGVYTVLAGFVEVGETLEQCVAREVMEESGIKVKNLRYVGS--QPWPFPH------  202 (256)
T ss_pred             CEEEEEEEe-CC-EEEEEEccCCCCCcEeCcccCCCCCCCHHHHhhhhhhhccCceeeeeEEEEe--EeecCCC------
Confidence            455555544 44 89998887544 8999999999999999999999999999998754432211  1223322      


Q ss_pred             ccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhcch
Q 026407          150 NRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRKP  206 (239)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~  206 (239)
                                .....|......  .++..     .++|+.+++|++++|+..+....
T Consensus       203 ----------~lm~~f~a~~~~--~~~~~-----~~~Ei~~a~W~~~del~~lp~~~  242 (256)
T PRK00241        203 ----------SLMLGFHADYDS--GEIVF-----DPKEIADAQWFRYDELPLLPPSG  242 (256)
T ss_pred             ----------eEEEEEEEEecC--CcccC-----CcccEEEEEEECHHHCcccCCch
Confidence                      122334444332  22222     23488999999999998876433

>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.74  E-value=2.3e-17  Score=125.60  Aligned_cols=111  Identities=23%  Similarity=0.289  Sum_probs=71.6

Q ss_pred             eEEEEEEeCCCCEEEEEEecCCC-CcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhhhcc
Q 026407           72 NVGICLINSSKKKIFAATRIHIP-YTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQKLN  150 (239)
Q Consensus        72 ~v~v~i~~~~~~~vLl~~r~~~~-~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (239)
                      ++++++++.++ ++||++|...+ +.|+||||++|.|||+++||.||++||||+++ .+....   ..+.++        
T Consensus         2 ~~~~ii~~~~~-~vLL~~r~~~~~~~w~lPGG~ve~gEs~~~a~~REl~EEtGl~~-~~~~~~---~~~~~~--------   68 (121)
T cd04669           2 RASIVIINDQG-EILLIRRIKPGKTYYVFPGGGIEEGETPEEAAKREALEELGLDV-RVEEIF---LIVNQN--------   68 (121)
T ss_pred             ceEEEEEeCCC-EEEEEEEecCCCCcEECCceeccCCCCHHHHHHHHHHHhhCeeE-eeeeEE---EEEeeC--------
Confidence            46677777756 89998886543 89999999999999999999999999999997 222111   111111        


Q ss_pred             cccCCcccCceeEEEEEEEccccceecccCC--CCCCCccceeEEeCHhHHHHhh
Q 026407          151 RRWGTNYKGQAQKWFLFKFTGKEEEINLLGD--GSEKPEFNEWRWMFPEQVLERV  203 (239)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~E~~~~~Wv~~eel~~~~  203 (239)
                              +...++|.+..............  ..++.+..++.|++++++..+.
T Consensus        69 --------~~~~~~f~~~~~~g~~~~~~~~e~~~~~~~~~~~~~Wv~~~el~~l~  115 (121)
T cd04669          69 --------GRTEHYFLARVISGKLGLGVGEEFERQSDDNQYHPVWVDLDQLETIP  115 (121)
T ss_pred             --------CcEEEEEEEEEECCeecCCCchhhcccCCCCceEEEEEEHHHcccCC
Confidence                    12244555554432111000000  0113456789999999998764

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.74  E-value=2.3e-17  Score=124.69  Aligned_cols=107  Identities=21%  Similarity=0.322  Sum_probs=72.6

Q ss_pred             eEEEEEEeCCCCEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccc-eeeeccCceeeecCchhhhhhcc
Q 026407           72 NVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSA-EFLAETPYWLTYDFPLKVKQKLN  150 (239)
Q Consensus        72 ~v~v~i~~~~~~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~  150 (239)
                      +|.+++++.++ ++||++|... +.|.+|||+++.|||+++||+||++||||+.+. .+....    .+.+..       
T Consensus         2 ~~~~~i~~~~~-~vLL~~r~~~-~~w~~PgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~~~----~~~~~~-------   68 (120)
T cd04680           2 GARAVVTDADG-RVLLVRHTYG-PGWYLPGGGLERGETFAEAARRELLEELGIRLAVVAELLG----VYYHSA-------   68 (120)
T ss_pred             ceEEEEECCCC-eEEEEEECCC-CcEeCCCCcCCCCCCHHHHHHHHHHHHHCCccccccceEE----EEecCC-------
Confidence            46778888877 8999888764 499999999999999999999999999999875 322111    111111       


Q ss_pred             cccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh
Q 026407          151 RRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV  203 (239)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~  203 (239)
                             .......++|.+.......     ....+|+.+++|++++++.+..
T Consensus        69 -------~~~~~~~~~f~~~~~~~~~-----~~~~~E~~~~~w~~~~~l~~~~  109 (120)
T cd04680          69 -------SGSWDHVIVFRARADTQPV-----IRPSHEISEARFFPPDALPEPT  109 (120)
T ss_pred             -------CCCceEEEEEEecccCCCc-----cCCcccEEEEEEECHHHCcccC
Confidence                   0111223344444332211     2234588999999999998754

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function

Probab=99.73  E-value=6.4e-17  Score=124.91  Aligned_cols=126  Identities=18%  Similarity=0.209  Sum_probs=75.9

Q ss_pred             EEEEEEeCCCCEEEEEEecCCC-CcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhhhccc
Q 026407           73 VGICLINSSKKKIFAATRIHIP-YTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQKLNR  151 (239)
Q Consensus        73 v~v~i~~~~~~~vLl~~r~~~~-~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (239)
                      |++++ ..++ ++||++|...+ +.|.+|||++++|||+.+||.||++||||+++......  ....+..+...      
T Consensus         3 v~~ii-~~~~-~vLlv~r~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~--~~~~~~~~~~~------   72 (134)
T cd03675           3 VAAVV-ERDG-RFLLVEEETDGGLVFNQPAGHLEPGESLIEAAVRETLEETGWHVEPTALL--GIYQWTAPDSD------   72 (134)
T ss_pred             EEEEE-EECC-EEEEEEEccCCCceEECCCccCCCCCCHHHHHHHHHHHHHCcccccceEE--EEEEeecCCCC------
Confidence            33444 4455 89998876544 79999999999999999999999999999987432111  11122221100      


Q ss_pred             ccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhcchHH-HHHHHhhhhhcC
Q 026407          152 RWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRKPCG-LIFRYFSPFCLA  220 (239)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~-~~~~~l~~~~~~  220 (239)
                            .......|.+.......      ....++|+.++.|++++++.++...... .+.+.+..|+..
T Consensus        73 ------~~~~~~~f~~~~~~~~~------~~~~~~e~~~~~w~~~~el~~~~~~~~~~~~~~~i~~~l~~  130 (134)
T cd03675          73 ------TTYLRFAFAAELLEHLP------DQPLDSGIVRAHWLTLEEILALAARLRSPLVLRCIEDYLAG  130 (134)
T ss_pred             ------eeEEEEEEEEEECCCCC------CCCCCCCceeeEEEeHHHHHhhhhhhcCchHHHHHHHHHhc
Confidence                  00112233333332211      1123457889999999999988631111 455555666553

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,

>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.73  E-value=3.9e-17  Score=125.32  Aligned_cols=114  Identities=25%  Similarity=0.314  Sum_probs=75.2

Q ss_pred             eeeEEEEEEeCCCCEEEEEEecC--CCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhh
Q 026407           70 RRNVGICLINSSKKKIFAATRIH--IPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQ  147 (239)
Q Consensus        70 ~~~v~v~i~~~~~~~vLl~~r~~--~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~  147 (239)
                      +.+|.+++++.++ ++||++|..  .++.|.+|||+++.|||+++||.||++||||+++..+....  .....+++    
T Consensus         2 ~~~v~~ii~~~~~-~iLl~~r~~~~~~~~w~~PGG~ve~gEt~~~Aa~REl~EE~Gl~~~~~~~~~--~~~~~~~~----   74 (129)
T cd04678           2 RVGVGVFVLNPKG-KVLLGKRKGSHGAGTWALPGGHLEFGESFEECAAREVLEETGLHIENVQFLT--VTNDVFEE----   74 (129)
T ss_pred             ceEEEEEEECCCC-eEEEEeccCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCcccceEEEE--EEeEEeCC----
Confidence            4678888998877 999999874  34899999999999999999999999999999874332111  11111111    


Q ss_pred             hcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHh
Q 026407          148 KLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLER  202 (239)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~  202 (239)
                              ........+|.+...........    .+.+|+.+++|++++++.++
T Consensus        75 --------~~~~~~~~~~~~~~~~~~~~~~~----~~~~e~~~~~W~~~~~l~~~  117 (129)
T cd04678          75 --------EGKHYVTIFVKAEVDDGEAEPNK----MEPEKCEGWEWFDWEELPSV  117 (129)
T ss_pred             --------CCcEEEEEEEEEEeCCCCcccCC----CCCceeCceEEeCHHHCCCc
Confidence                    00112233444444432111110    13447889999999999975

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.73  E-value=4.6e-17  Score=123.91  Aligned_cols=107  Identities=26%  Similarity=0.356  Sum_probs=69.6

Q ss_pred             EEEEEEeCCCCEEEEEEecCC-----CCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhh
Q 026407           73 VGICLINSSKKKIFAATRIHI-----PYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQ  147 (239)
Q Consensus        73 v~v~i~~~~~~~vLl~~r~~~-----~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~  147 (239)
                      +++++++ ++ ++||++|...     +|.|.||||+++.||++++||.||++||||+++....  ......+.++.    
T Consensus         4 ~~~~~~~-~g-~vLl~~r~~~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~--~~~~~~~~~~~----   75 (122)
T cd04682           4 ALALLIG-DG-RLLLQLRDDKPGIPYPGHWDLPGGHREGGETPLECVLRELLEEIGLTLPESR--IPWFRVYPSAS----   75 (122)
T ss_pred             EEEEEEc-CC-EEEEEEccCCCCCCCCCcEeCCCccccCCCCHHHHHHHHHHHHhCCcccccc--cceeEecccCC----
Confidence            4444444 46 9999998653     3899999999999999999999999999999873211  01111111110    


Q ss_pred             hcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh
Q 026407          148 KLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV  203 (239)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~  203 (239)
                                .....++|++...... ...     ...+|+.+++|++++++.+..
T Consensus        76 ----------~~~~~~~f~~~~~~~~-~~~-----~~~~E~~~~~W~~~~el~~~~  115 (122)
T cd04682          76 ----------PPGTEHVFVVPLTARE-DAI-----LFGDEGQALRLMTVEEFLAHE  115 (122)
T ss_pred             ----------CCceEEEEEEEEecCC-Ccc-----ccCchhheeecccHHHHhhcc
Confidence                      1123444555444322 111     234588999999999998653

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.73  E-value=9.8e-17  Score=123.13  Aligned_cols=116  Identities=22%  Similarity=0.298  Sum_probs=76.1

Q ss_pred             eeEEEEEEeC--CCCEEEEEEecCC-CCcEEcCceecCCCCCHHHHHHHHHHHHhCCcccee--eeccCceeeecCchhh
Q 026407           71 RNVGICLINS--SKKKIFAATRIHI-PYTWQMPQGGADEGEDLINAALRELREETGVTSAEF--LAETPYWLTYDFPLKV  145 (239)
Q Consensus        71 ~~v~v~i~~~--~~~~vLl~~r~~~-~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~--~~~~~~~~~~~~~~~~  145 (239)
                      +.|.+++++.  ++ ++||++|... +|.|.+|||+++.|||+++||.||++||||+++..+  +.....+..+.+.+  
T Consensus         2 ~~~~v~~~~~~~~~-~vLL~~r~~~~~~~w~~PgG~ve~~Es~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~--   78 (129)
T cd04664           2 RSVLVVPYRLTGEG-RVLLLRRSDKYAGFWQSVTGGIEDGESPAEAARREVAEETGLDPERLTLLDRGASIAFVEFTD--   78 (129)
T ss_pred             cEEEEEEEEeCCCC-EEEEEEeCCCCCCcccccCcccCCCCCHHHHHHHHHHHHHCCChhheEEEeecccccccccCC--
Confidence            3567777776  66 9999998764 699999999999999999999999999999987322  22111110111111  


Q ss_pred             hhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhcch
Q 026407          146 KQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRKP  206 (239)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~  206 (239)
                                ........+|++.+.... .      ....+|+.++.|++++++.++...+
T Consensus        79 ----------~~~~~~~~~f~~~~~~~~-~------~~~~~E~~~~~W~~~~e~~~~~~~~  122 (129)
T cd04664          79 ----------NGRVWTEHPFAFHLPSDA-V------VTLDWEHDAFEWVPPEEAAALLLWE  122 (129)
T ss_pred             ----------CceEEEEeEEEEEcCCCC-c------ccCCccccccEecCHHHHHHHHcCh
Confidence                      001123345555544321 1      1123488899999999999876433

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.72  E-value=5.2e-17  Score=127.28  Aligned_cols=117  Identities=17%  Similarity=0.302  Sum_probs=77.1

Q ss_pred             ceeeEEEEEEeCC---CCEEEEEEecCC----CCcEEc-CceecCCCCCHHHHHHHHHHHHhCCccc--eeeeccCceee
Q 026407           69 YRRNVGICLINSS---KKKIFAATRIHI----PYTWQM-PQGGADEGEDLINAALRELREETGVTSA--EFLAETPYWLT  138 (239)
Q Consensus        69 ~~~~v~v~i~~~~---~~~vLl~~r~~~----~~~w~~-PgG~ve~gEs~~~aa~REl~EEtGl~~~--~~~~~~~~~~~  138 (239)
                      ++.+|.+++++.+   + ++|+++|...    +|.|++ |||++++|||+++||+||++||||+++.  .+......  .
T Consensus         1 ~h~~v~~~v~~~~~~~~-~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt~~~aa~REl~EEtGl~~~~~~l~~~~~~--~   77 (144)
T cd04692           1 WHRTFHCWIITKDEGKG-YVLLQKRSANKKTYPGLWDISSAGHILAGETPLEDGIRELEEELGLDVSADDLIPLGTF--K   77 (144)
T ss_pred             CceEEEEEEEEccCCCC-EEEEEecCCCCCCCCCccccccCcccCCCCCHHHHHHHHHHHHhCCCCChHHeEEeeEE--E
Confidence            4678889999887   5 9999999753    489999 5999999999999999999999999752  23211111  1


Q ss_pred             ecCchhhhhhcccccCCcc-cCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh
Q 026407          139 YDFPLKVKQKLNRRWGTNY-KGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV  203 (239)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~  203 (239)
                      +.+..          .+.. ......+|++..........     ..++|+.+++|++++++.+++
T Consensus        78 ~~~~~----------~~~~~~~~~~~~f~~~~~~~~~~~~-----~~~~E~~~~~W~~~~el~~~~  128 (144)
T cd04692          78 IEYDH----------IGKLIDREFHHVYLYELKVPLEEFT-----LQKEEVAGVVLIPLDEFAELL  128 (144)
T ss_pred             Eeccc----------cCCCccceEEEEEEEeccCChhhcC-----CChhHhheEEEECHHHHHHHH
Confidence            11110          0000 11223445554432111111     234588999999999999877

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.72  E-value=2e-16  Score=123.16  Aligned_cols=58  Identities=33%  Similarity=0.513  Sum_probs=49.6

Q ss_pred             eeeEEEEEEeCCCCEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccce
Q 026407           70 RRNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAE  128 (239)
Q Consensus        70 ~~~v~v~i~~~~~~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~  128 (239)
                      +..+++++++.++.++||++|.. .|.|.+|||++|+|||+++||.||++||||+++..
T Consensus         2 ~~~~~~~v~~~~~~~vLLv~r~~-~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~   59 (138)
T cd03674           2 HFTASAFVVNPDRGKVLLTHHRK-LGSWLQPGGHIDPDESLLEAALRELREETGIELLG   59 (138)
T ss_pred             cEEEEEEEEeCCCCeEEEEEEcC-CCcEECCceecCCCCCHHHHHHHHHHHHHCCCccc
Confidence            35678888888723999988865 48999999999999999999999999999998643

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil

>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.72  E-value=9.4e-17  Score=121.55  Aligned_cols=54  Identities=35%  Similarity=0.578  Sum_probs=45.7

Q ss_pred             eEEEEEEeCCCCEEEEEEecCC--CCcEEcCceecCCCCCHHHHHHHHHHHHhCCccc
Q 026407           72 NVGICLINSSKKKIFAATRIHI--PYTWQMPQGGADEGEDLINAALRELREETGVTSA  127 (239)
Q Consensus        72 ~v~v~i~~~~~~~vLl~~r~~~--~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~  127 (239)
                      +|++++++. + ++||++|...  ++.|.+|||+++.|||+++||.||++||||+++.
T Consensus         2 ~v~~ii~~~-~-~vLl~~r~~~~~~~~w~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~   57 (122)
T cd04673           2 AVGAVVFRG-G-RVLLVRRANPPDAGLWSFPGGKVELGETLEQAALRELLEETGLEAE   57 (122)
T ss_pred             cEEEEEEEC-C-EEEEEEEcCCCCCCeEECCCcccCCCCCHHHHHHHHHHHhhCcEee
Confidence            455666764 5 8999888653  3889999999999999999999999999999974

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.72  E-value=1.1e-16  Score=122.73  Aligned_cols=115  Identities=25%  Similarity=0.438  Sum_probs=75.2

Q ss_pred             eeEEEEEEeCCC--CEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhhh
Q 026407           71 RNVGICLINSSK--KKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQK  148 (239)
Q Consensus        71 ~~v~v~i~~~~~--~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~  148 (239)
                      .++++++++.++  .++||.+|..  +.|.+|||++++|||+.+||.||++||||+++..+.........+.+..     
T Consensus         3 ~~~g~vi~~~~~~~~~vLl~~~~~--~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~-----   75 (130)
T cd03428           3 RSAGAIIYRRLNNEIEYLLLQASY--GHWDFPKGHVEPGEDDLEAALRETEEETGITAEQLFIVLGFKETLNYQV-----   75 (130)
T ss_pred             eEEEEEEEEecCCCceEEEEEccC--CcCcCCcCCCCCCCCHHHHHHHHHHHHHCCChhhhhhhccceeEEEccc-----
Confidence            456666665543  3688888886  8999999999999999999999999999999854432211111122110     


Q ss_pred             cccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhcch
Q 026407          149 LNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRKP  206 (239)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~  206 (239)
                             ...+....+|++..... .....      .+|..++.|++++++.++...+
T Consensus        76 -------~~~~~~~~~f~~~~~~~-~~~~~------~~E~~~~~W~~~~e~~~~~~~~  119 (130)
T cd03428          76 -------RGKLKTVTYFLAELRPD-VEVKL------SEEHQDYRWLPYEEALKLLTYE  119 (130)
T ss_pred             -------cCcceEEEEEEEEeCCC-Ccccc------ccceeeEEeecHHHHHHHcCch
Confidence                   00123345555555421 11111      1488999999999999987544

Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and

>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.72  E-value=6.8e-17  Score=124.16  Aligned_cols=58  Identities=33%  Similarity=0.552  Sum_probs=50.8

Q ss_pred             ceeeEEEEEEeCCCCEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccce
Q 026407           69 YRRNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAE  128 (239)
Q Consensus        69 ~~~~v~v~i~~~~~~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~  128 (239)
                      +...+.+++++.++ ++||++|... +.|.||||+++.|||+++||.||++||||+++..
T Consensus         6 ~~~~~~~~v~~~~~-~vLL~~r~~~-~~w~~PgG~v~~gEt~~~aa~REl~EE~Gi~~~~   63 (132)
T cd04677           6 ILVGAGVILLNEQG-EVLLQKRSDT-GDWGLPGGAMELGESLEETARRELKEETGLEVEE   63 (132)
T ss_pred             cccceEEEEEeCCC-CEEEEEecCC-CcEECCeeecCCCCCHHHHHHHHHHHHhCCeeee
Confidence            44677788888877 8999988764 8999999999999999999999999999998743

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.72  E-value=7.5e-17  Score=123.58  Aligned_cols=108  Identities=22%  Similarity=0.344  Sum_probs=73.4

Q ss_pred             eEEEEEEeCCCCEEEEEEecCC----CCcEEc-CceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhh
Q 026407           72 NVGICLINSSKKKIFAATRIHI----PYTWQM-PQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVK  146 (239)
Q Consensus        72 ~v~v~i~~~~~~~vLl~~r~~~----~~~w~~-PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~  146 (239)
                      ++.+++++.++ ++||++|...    +|.|++ |||+++.||++++||+||++||||+++..+.....    +.+.... 
T Consensus         2 ~~~v~i~~~~~-~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~~~~aa~REl~EEtGl~~~~l~~~~~----~~~~~~~-   75 (126)
T cd04697           2 ATYIFVFNSEG-KLCVHKRTLTKDWCPGYWDIAFGGVVQAGESYLQNAQRELEEELGIDGVQLTPLGL----FYYDTDG-   75 (126)
T ss_pred             eEEEEEEcCCC-eEEEEECCCCCCCCCCcccCcCCcccCCCCCHHHHHHHHHHHHHCCCccccEEeeE----EEecCCC-
Confidence            56788899888 9999998642    489999 69999999999999999999999999864432221    2221100 


Q ss_pred             hhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhc
Q 026407          147 QKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVR  204 (239)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~  204 (239)
                                 ......+|.+....   ...     ...+|+.++.|++++++.++..
T Consensus        76 -----------~~~~~~~f~~~~~~---~~~-----~~~~E~~~~~w~~~~el~~~~~  114 (126)
T cd04697          76 -----------NRVWGKVFSCVYDG---PLK-----LQEEEVEEITWLSINEILQFKE  114 (126)
T ss_pred             -----------ceEEEEEEEEEECC---CCC-----CCHhHhhheEEcCHHHHHHHhh
Confidence                       00112233333321   112     2345888999999999998763

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.71  E-value=1.2e-16  Score=122.49  Aligned_cols=56  Identities=30%  Similarity=0.462  Sum_probs=47.2

Q ss_pred             eeeEEEEEEeCCCCEEEEEEecCC-CCcEEcCceecCCCCCHHHHHHHHHHHHhCCccc
Q 026407           70 RRNVGICLINSSKKKIFAATRIHI-PYTWQMPQGGADEGEDLINAALRELREETGVTSA  127 (239)
Q Consensus        70 ~~~v~v~i~~~~~~~vLl~~r~~~-~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~  127 (239)
                      |.+|.+++++. + ++||++|... ++.|.+|||+++.|||+++||.||+.||||+++.
T Consensus         1 r~~a~~iv~~~-~-~vLl~~r~~~~~~~~~lPGG~ve~gEt~~~aa~RE~~EEtGl~v~   57 (128)
T cd04687           1 RNSAKAVIIKN-D-KILLIKHHDDGGVWYILPGGGQEPGETLEDAAHRECKEEIGIDVE   57 (128)
T ss_pred             CcEEEEEEEEC-C-EEEEEEEEcCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCccc
Confidence            35667777764 5 8999888644 3789999999999999999999999999999973

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.71  E-value=1.3e-16  Score=122.04  Aligned_cols=55  Identities=25%  Similarity=0.482  Sum_probs=47.9

Q ss_pred             eEEEEEEeCCCCEEEEEEecCC--CCcEEcCceecCCCCCHHHHHHHHHHHHhCCccc
Q 026407           72 NVGICLINSSKKKIFAATRIHI--PYTWQMPQGGADEGEDLINAALRELREETGVTSA  127 (239)
Q Consensus        72 ~v~v~i~~~~~~~vLl~~r~~~--~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~  127 (239)
                      .|++++++.++ ++||++|...  ++.|.+|||++|.|||+++||.||++||||+++.
T Consensus         2 ~~~~vv~~~~~-~vLl~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtG~~~~   58 (123)
T cd04671           2 IVAAVILNNQG-EVLLIQEAKRSCRGKWYLPAGRMEPGETIEEAVKREVKEETGLDCE   58 (123)
T ss_pred             EEEEEEEcCCC-EEEEEEecCCCCCCeEECceeecCCCCCHHHHHHHHHHHHHCCeee
Confidence            46677788777 9999888643  3899999999999999999999999999999874

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.71  E-value=1e-16  Score=122.76  Aligned_cols=108  Identities=24%  Similarity=0.414  Sum_probs=71.8

Q ss_pred             eEEEEEEeCCCCEEEEEEecCC----CCcEEcC-ceecCCCCCHHHHHHHHHHHHhCCccc--eeeeccCceeeecCchh
Q 026407           72 NVGICLINSSKKKIFAATRIHI----PYTWQMP-QGGADEGEDLINAALRELREETGVTSA--EFLAETPYWLTYDFPLK  144 (239)
Q Consensus        72 ~v~v~i~~~~~~~vLl~~r~~~----~~~w~~P-gG~ve~gEs~~~aa~REl~EEtGl~~~--~~~~~~~~~~~~~~~~~  144 (239)
                      +|.+++++.++ +|||++|...    +|.|++| ||+++.||++ +||+||++||||+++.  .+.    ....+.+.. 
T Consensus         2 ~v~v~~~~~~g-~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~~-~aa~REl~EEtGl~~~~~~~~----~~~~~~~~~-   74 (127)
T cd04693           2 VVHVCIFNSKG-ELLLQKRSPNKDGWPGMWDLSVGGHVQAGETS-TAAEREVKEELGLELDFSELR----PLFRYFFEA-   74 (127)
T ss_pred             eEEEEEEeCCC-eEEEEEccCCCCCCCCcccccCCCcCCCCCCH-HHHHHHHHHHhCCCcChhhcE----EEEEEEeec-
Confidence            56778888877 9999988742    4899998 8999999999 9999999999999863  221    111222111 


Q ss_pred             hhhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhcc
Q 026407          145 VKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRK  205 (239)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~  205 (239)
                                   .+ ...++++..........     ...+|+.+++|++++++.+++.+
T Consensus        75 -------------~~-~~~~~~~~~~~~~~~~~-----~~~~E~~~~~w~~~~el~~~~~~  116 (127)
T cd04693          75 -------------EG-FDDYYLFYADVEIGKLI-----LQKEEVDEVKFVSKDEIDGLIGH  116 (127)
T ss_pred             -------------CC-eEEEEEEEecCcccccc-----cCHHHhhhEEEeCHHHHHHHHhc
Confidence                         01 11222333222111111     23458899999999999988743

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.71  E-value=2.8e-16  Score=121.19  Aligned_cols=107  Identities=26%  Similarity=0.361  Sum_probs=68.0

Q ss_pred             eCCCCEEEEEEecC-CCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhhhcccccCCcc
Q 026407           79 NSSKKKIFAATRIH-IPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQKLNRRWGTNY  157 (239)
Q Consensus        79 ~~~~~~vLl~~r~~-~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (239)
                      +.++ ++||.+|.. .+|.|.+|||++++|||+.+||.||++||||+++..+.........+..++.             
T Consensus        11 ~~~~-~vLl~~r~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~-------------   76 (131)
T cd04695          11 DKET-KVLLLKRVKTLGGFWCHVAGGVEAGETAWQAALRELKEETGISLPELYNADYLEQFYEANDN-------------   76 (131)
T ss_pred             CCCC-EEEEEEecCCCCCcEECCcccccCCCCHHHHHHHHHHHHhCCCccccccccceeeEeecCCc-------------
Confidence            4444 899988875 3599999999999999999999999999999987544211110011111110             


Q ss_pred             cCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhcch
Q 026407          158 KGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRKP  206 (239)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~  206 (239)
                      ......+|++..... ...      ...+|+.+++|++++++.++...+
T Consensus        77 ~~~~~~~f~~~~~~~-~~~------~~~~E~~~~~W~~~~e~~~~~~~~  118 (131)
T cd04695          77 RILMAPVFVGFVPPH-QEV------VLNHEHTEYRWCSFAEALELAPFP  118 (131)
T ss_pred             eEEEEEEEEEEecCC-Ccc------ccCchhcccEecCHHHHHHhcCCh
Confidence            001122334333221 111      123488999999999999987443

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily

Probab=99.71  E-value=2.2e-16  Score=122.14  Aligned_cols=112  Identities=20%  Similarity=0.387  Sum_probs=71.8

Q ss_pred             CCEEEEEEecCC-CCcEEcCceecCCCCCHHHHHHHHHHHHhCCccce-eeecc-CceeeecCchhhhhhcccccCCccc
Q 026407           82 KKKIFAATRIHI-PYTWQMPQGGADEGEDLINAALRELREETGVTSAE-FLAET-PYWLTYDFPLKVKQKLNRRWGTNYK  158 (239)
Q Consensus        82 ~~~vLl~~r~~~-~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  158 (239)
                      +.++||++|... .|.|.||||++|+|||+++||.||++||||+++.. +.+.. .....+.++....       .....
T Consensus        12 ~~~~Llvk~~~~~~g~W~fPgG~ve~gEt~~eaa~REl~EEtGl~v~~~~i~~~~~~~~~~~~~~~~~-------~~~~~   84 (132)
T cd04661          12 DTLVLLVQQKVGSQNHWILPQGKREEGETLRQTAERTLKELCGNNLKAKFYGNAPVGFYKYKYPKAVR-------NEGIV   84 (132)
T ss_pred             CcEEEEEEeecCCCCeeECCcccccCCCCHHHHHHHHHHHhhCCCceEEEEEecCcEEEEEecCcccc-------cccCc
Confidence            338888888653 38999999999999999999999999999997632 22111 1223333332110       00112


Q ss_pred             CceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhcchHH
Q 026407          159 GQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRKPCG  208 (239)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~  208 (239)
                      +....+|.+...+.  +..      ..+|+.++.|++++++.+++....+
T Consensus        85 ~~~~~~f~~~~~~g--~~~------~~~e~~~~~W~~~~el~~~l~~~~~  126 (132)
T cd04661          85 GAKVFFFKARYMSG--QFE------LSQNQVDFKWLAKEELQKYLNPPYL  126 (132)
T ss_pred             ccEEEEEEEEEecC--ccc------cCCCcceeEecCHHHHHhhcCHHHH
Confidence            23445555554332  122      1248899999999999998765544

MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.

>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.71  E-value=1.2e-16  Score=120.88  Aligned_cols=103  Identities=25%  Similarity=0.346  Sum_probs=67.4

Q ss_pred             EEEEEEeCCCCEEEEEEecC----CCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhhh
Q 026407           73 VGICLINSSKKKIFAATRIH----IPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQK  148 (239)
Q Consensus        73 v~v~i~~~~~~~vLl~~r~~----~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~  148 (239)
                      |++++++. + ++||++|..    .+|.|+||||++|+|||+++||.||++||||+++..+...    ..+.++..    
T Consensus         3 v~~vi~~~-~-~vLL~rR~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l----~~~~~~~~----   72 (117)
T cd04691           3 VVGVLFSD-D-KVLLERRSLTKNADPGKLNIPGGHIEAGESQEEALLREVQEELGVDPLSYTYL----CSLYHPTS----   72 (117)
T ss_pred             EEEEEEEC-C-EEEEEEeCCCCCCCCCeEECcceeecCCCCHHHHHHHHHHHHHCCCcccceEE----EEEeccCC----
Confidence            44455554 5 899999864    3489999999999999999999999999999986433211    11221110    


Q ss_pred             cccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh
Q 026407          149 LNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV  203 (239)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~  203 (239)
                               .....++|.+....  ...       ..+|..++.|++++++....
T Consensus        73 ---------~~~~~~~~~~~~~~--~~~-------~~~E~~~~~W~~~~~l~~~~  109 (117)
T cd04691          73 ---------ELQLLHYYVVTFWQ--GEI-------PAQEAAEVHWMTANDIVLAS  109 (117)
T ss_pred             ---------CeEEEEEEEEEEec--CCC-------CcccccccEEcCHHHcchhh
Confidence                     11123333433221  111       12488999999999998754

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.71  E-value=1.5e-16  Score=121.59  Aligned_cols=117  Identities=16%  Similarity=0.179  Sum_probs=72.4

Q ss_pred             eEEEEEEeCCCCEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhhhccc
Q 026407           72 NVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQKLNR  151 (239)
Q Consensus        72 ~v~v~i~~~~~~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (239)
                      +|.+++++. + ++||++|.. .+.|.+|||+++.||++.+||.||++||||+++............+.+..        
T Consensus         3 ~v~~vi~~~-~-~vLl~~~~~-~~~w~lPgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~--------   71 (126)
T cd04688           3 RAAAIIIHN-G-KLLVQKNPD-ETFYRPPGGGIEFGESSEEALIREFKEELGLKIEITRLLGVVENIFTYNG--------   71 (126)
T ss_pred             EEEEEEEEC-C-EEEEEEeCC-CCeEECCCccccCCCCHHHHHHHHHHHHhCCceecceeeEEEEEeeccCC--------
Confidence            455566654 4 899998876 58999999999999999999999999999998733221111101111111        


Q ss_pred             ccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh
Q 026407          152 RWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV  203 (239)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~  203 (239)
                          ........+|.+...+............++.|+.++.|++++++..+.
T Consensus        72 ----~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~  119 (126)
T cd04688          72 ----KPGHEIEFYYLVTLLDESLYQQDIEILEEEGEKIVFRWIPIDELKEIK  119 (126)
T ss_pred             ----cccEEEEEEEEEEeCCCcccccccceeccCCCEEEEEEeeHHHcccCc
Confidence                001223455555555432110000001234588999999999998653

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes

Probab=99.70  E-value=9.9e-17  Score=127.66  Aligned_cols=110  Identities=21%  Similarity=0.167  Sum_probs=72.7

Q ss_pred             eeEEEEEEeCCC-CEEEEEEecCC----CCcEEcCceecCCC-CCHHHHHHHHHHHHhCCccceeeeccCceeeecCchh
Q 026407           71 RNVGICLINSSK-KKIFAATRIHI----PYTWQMPQGGADEG-EDLINAALRELREETGVTSAEFLAETPYWLTYDFPLK  144 (239)
Q Consensus        71 ~~v~v~i~~~~~-~~vLl~~r~~~----~~~w~~PgG~ve~g-Es~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~  144 (239)
                      .+|.+++.+.++ .++||++|...    +|.|++|||++|.| ||+++||+||++||||+++..+.........+..   
T Consensus         3 ~av~v~l~~~~~~~~vLL~~R~~~~~~~~g~w~lPGG~ve~gdEs~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~~---   79 (157)
T cd03426           3 AAVLVLLVEREGELRVLLTKRASHLRSHPGQVAFPGGKVDPGDEDPVATALREAEEEIGLPPDSVEVLGRLPPYYTR---   79 (157)
T ss_pred             eEEEEEEEeCCCceEEEEEEcccccccCCCcEECCCCCcCCCcCCHHHHHHHHHHHHhCCCccceEEEEECCCcccc---
Confidence            355666666652 48999998753    59999999999999 9999999999999999987543211111000000   


Q ss_pred             hhhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHh
Q 026407          145 VKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLER  202 (239)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~  202 (239)
                                   .+...+.|++..... .....     +.+|+.++.|++++++.+.
T Consensus        80 -------------~~~~v~~~~~~~~~~-~~~~~-----~~~E~~~~~W~~~~el~~~  118 (157)
T cd03426          80 -------------SGFVVTPVVGLVPPP-LPLVL-----NPDEVAEVFEVPLSFLLDP  118 (157)
T ss_pred             -------------CCCEEEEEEEEECCC-CCCCC-----CHHHhheeEEEcHHHHhCc
Confidence                         122344455554432 11222     2348999999999999875

The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.

>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP

Probab=99.70  E-value=7.6e-17  Score=124.48  Aligned_cols=105  Identities=23%  Similarity=0.358  Sum_probs=71.7

Q ss_pred             eEEEEEEeCCCCEEEEEEecCC-CCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhhhcc
Q 026407           72 NVGICLINSSKKKIFAATRIHI-PYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQKLN  150 (239)
Q Consensus        72 ~v~v~i~~~~~~~vLl~~r~~~-~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (239)
                      +|.+.+++.++ ++||++|... +|.|.+|||+++.|||+++||.||++||||+++..+.....  ..+.++        
T Consensus         2 ~v~i~l~~~~~-~vLL~~r~~~~~~~w~lPgG~ie~gEt~~~aA~REl~EEtGl~~~~~~~l~~--~~~~~~--------   70 (131)
T cd03429           2 AVIVLVIDGGD-RILLARQPRFPPGMYSLLAGFVEPGESLEEAVRREVKEEVGIRVKNIRYVGS--QPWPFP--------   70 (131)
T ss_pred             eEEEEEEeCCC-EEEEEEecCCCCCcCcCCcccccCCCCHHHHHhhhhhhccCceeeeeEEEee--cCCCCC--------
Confidence            45666677655 9999888755 48999999999999999999999999999999754432211  011111        


Q ss_pred             cccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHh
Q 026407          151 RRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLER  202 (239)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~  202 (239)
                              .....+|++....  ....     ...+|+.++.|++++++.++
T Consensus        71 --------~~~~~~f~~~~~~--~~~~-----~~~~E~~~~~w~~~~el~~~  107 (131)
T cd03429          71 --------SSLMLGFTAEADS--GEIV-----VDDDELEDARWFSRDEVRAA  107 (131)
T ss_pred             --------ceEEEEEEEEEcC--Cccc-----CCchhhhccEeecHHHHhhc
Confidence                    1123344444332  1122     23458889999999999985

Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.

>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway

Probab=99.70  E-value=2.1e-16  Score=126.76  Aligned_cols=117  Identities=25%  Similarity=0.333  Sum_probs=76.7

Q ss_pred             ceeeEEEEEEeCCCCEEEEEEecCC----CCcEEcC-ceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCch
Q 026407           69 YRRNVGICLINSSKKKIFAATRIHI----PYTWQMP-QGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPL  143 (239)
Q Consensus        69 ~~~~v~v~i~~~~~~~vLl~~r~~~----~~~w~~P-gG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~  143 (239)
                      ++.+|+++++++++ ++||++|...    +|.|.+| ||++++|||+++||+||++||||+++..+... .....|..+.
T Consensus        29 ~~~~v~v~i~~~~~-~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt~~eaa~REl~EEtGl~~~~~~~~-~~~~~~~~~~  106 (165)
T cd02885          29 LHRAFSVFLFNSKG-RLLLQRRALSKYTFPGLWTNTCCSHPLPGEGVKDAAQRRLREELGITGDLLELV-LPRFRYRAPD  106 (165)
T ss_pred             ceeEEEEEEEcCCC-cEEEEeccCCCccCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccchhhc-cceEEEEEEc
Confidence            47888899999887 8999998753    4999996 89999999999999999999999997433221 0111111110


Q ss_pred             hhhhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhc
Q 026407          144 KVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVR  204 (239)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~  204 (239)
                      .         ..........+|.+.....   ..     ...+|+.+++|++++++.++..
T Consensus       107 ~---------~~~~~~~i~~~f~~~~~~~---~~-----~~~~Ev~~~~w~~~~el~~~~~  150 (165)
T cd02885         107 D---------GGLVEHEIDHVFFARADVT---LI-----PNPDEVSEYRWVSLEDLKELVA  150 (165)
T ss_pred             C---------CCceeeEEEEEEEEEeCCC---CC-----CCccceeEEEEECHHHHHHHHH
Confidence            0         0000111223343333221   11     1345889999999999998773

Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm

>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.70  E-value=2.3e-16  Score=120.14  Aligned_cols=56  Identities=27%  Similarity=0.478  Sum_probs=49.8

Q ss_pred             eeeEEEEEEeCCCCEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccc
Q 026407           70 RRNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSA  127 (239)
Q Consensus        70 ~~~v~v~i~~~~~~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~  127 (239)
                      ++.|.+++++.++ ++||++|... |.|.+|||+++.||++++||.||++||||+++.
T Consensus         2 ~~~v~~ii~~~~~-~vLl~~r~~~-~~w~lPgG~v~~~E~~~~aa~REl~EE~Gl~~~   57 (129)
T cd04676           2 LPGVTAVVRDDEG-RVLLIRRSDN-GLWALPGGAVEPGESPADTAVREVREETGLDVE   57 (129)
T ss_pred             cceEEEEEECCCC-eEEEEEecCC-CcEECCeeccCCCCCHHHHHHHHHHHHhCceeE
Confidence            4577788888777 9999999875 899999999999999999999999999999863

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily

Probab=99.70  E-value=2.8e-16  Score=121.63  Aligned_cols=108  Identities=23%  Similarity=0.262  Sum_probs=69.4

Q ss_pred             eEEEEEEeCCCCEEEEEEecCC--CCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhhhc
Q 026407           72 NVGICLINSSKKKIFAATRIHI--PYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQKL  149 (239)
Q Consensus        72 ~v~v~i~~~~~~~vLl~~r~~~--~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~  149 (239)
                      +..+++.+. + ++||++|...  ++.|.+|||++|.|||+.+||+||++||||+++..+...  ....+..+.      
T Consensus         3 ~~~~~i~~~-~-~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~--~~~~~~~~~------   72 (137)
T cd03427           3 TTLCFIKDP-D-KVLLLNRKKGPGWGGWNGPGGKVEPGETPEECAIRELKEETGLTIDNLKLV--GIIKFPFPG------   72 (137)
T ss_pred             EEEEEEEEC-C-EEEEEEecCCCCCCeEeCCceeCCCCCCHHHHHHHHHHHhhCeEeecceEE--EEEEEEcCC------
Confidence            344455554 5 8999888764  589999999999999999999999999999987433211  112222211      


Q ss_pred             ccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh
Q 026407          150 NRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV  203 (239)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~  203 (239)
                              .......+++.+........      ...|..+++|++++++.++.
T Consensus        73 --------~~~~~~~~~f~~~~~~~~~~------~~~e~~~~~W~~~~el~~~~  112 (137)
T cd03427          73 --------EEERYGVFVFLATEFEGEPL------KESEEGILDWFDIDDLPLLP  112 (137)
T ss_pred             --------CCcEEEEEEEEECCcccccC------CCCccccceEEcHhhccccc
Confidence                    01123334444433222211      12355689999999998765

MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m

>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.70  E-value=2.2e-16  Score=119.50  Aligned_cols=54  Identities=35%  Similarity=0.572  Sum_probs=45.5

Q ss_pred             eEEEEEEeCCCCEEEEEEecCC---CCcEEcCceecCCCCCHHHHHHHHHHHHhCCccc
Q 026407           72 NVGICLINSSKKKIFAATRIHI---PYTWQMPQGGADEGEDLINAALRELREETGVTSA  127 (239)
Q Consensus        72 ~v~v~i~~~~~~~vLl~~r~~~---~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~  127 (239)
                      +|.+++++. + ++||++|...   +|.|++|||+++.|||+++||.||++||||+++.
T Consensus         2 ~v~~vi~~~-~-~vLL~~r~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~v~   58 (120)
T cd04683           2 AVYVLLRRD-D-EVLLQRRANTGYMDGQWALPAGHLEKGEDAVTAAVREAREEIGVTLD   58 (120)
T ss_pred             cEEEEEEEC-C-EEEEEEccCCCCCCCeEeCCccccCCCCCHHHHHHHHHHHHHCCccC
Confidence            455566654 5 8999998753   4899999999999999999999999999999874

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.69  E-value=4.5e-16  Score=118.84  Aligned_cols=114  Identities=20%  Similarity=0.239  Sum_probs=72.4

Q ss_pred             eEEEEEEeCC--CCEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCcccee-eeccCceeeecCchhhhhh
Q 026407           72 NVGICLINSS--KKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEF-LAETPYWLTYDFPLKVKQK  148 (239)
Q Consensus        72 ~v~v~i~~~~--~~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~-~~~~~~~~~~~~~~~~~~~  148 (239)
                      .+++++++.+  +.++||++|... +.|.+|||++|.|||+++||+||++||||++.... ...  ..+.+..+..    
T Consensus         2 ~~g~v~~~~~~~~~~vLLv~~~~~-~~w~~PgG~ve~~E~~~~aa~RE~~EEtG~~~~~~~~~l--~~~~~~~~~~----   74 (122)
T cd04666           2 QAGAIPYRETGGEVEVLLVTSRRT-GRWIVPKGGPEKDESPAEAAAREAWEEAGVRGKIGKRPL--GRFEYRKRSK----   74 (122)
T ss_pred             EEEEEEEEEcCCceEEEEEEecCC-CeEECCCCCcCCCCCHHHHHHHHHHHHhCCcccccceEE--EEEEeeecCC----
Confidence            3556666543  348999888654 89999999999999999999999999999986322 111  1112222110    


Q ss_pred             cccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhcc
Q 026407          149 LNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRK  205 (239)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~  205 (239)
                            .........+|.+......   .    ..++.+..+++|++++++.+++..
T Consensus        75 ------~~~~~~~~~~f~~~~~~~~---~----~~~~~e~~~~~W~~~~ea~~~~~~  118 (122)
T cd04666          75 ------NRPPRCEVAVFPLEVTEEL---D----EWPEMHQRKRKWFSPEEAALLVEE  118 (122)
T ss_pred             ------CCCceEEEEEEEEEEeccc---c----CCcccCceEEEEecHHHHHHhcCC
Confidence                  0011223455555554321   1    112346779999999999987743

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional

Probab=99.69  E-value=6.8e-16  Score=125.96  Aligned_cols=118  Identities=20%  Similarity=0.341  Sum_probs=77.2

Q ss_pred             CCceeeEEEEEEeCCCCEEEEEEecCC----CCcEEcC-ceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecC
Q 026407           67 DGYRRNVGICLINSSKKKIFAATRIHI----PYTWQMP-QGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDF  141 (239)
Q Consensus        67 ~~~~~~v~v~i~~~~~~~vLl~~r~~~----~~~w~~P-gG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~  141 (239)
                      ..++.++++++++.++ +|||++|...    +|.|.+| ||++++|||+++||+||+.||||+++..+..... .+.+..
T Consensus        31 ~~~h~av~v~i~~~~g-~vLL~rR~~~~~~~PG~w~~~~gG~ve~GEt~~~aa~REl~EEtGl~~~~~~~~~~-~~~~~~  108 (184)
T PRK03759         31 TPLHLAFSCYLFDADG-RLLVTRRALSKKTWPGVWTNSCCGHPQPGESLEDAVIRRCREELGVEITDLELVLP-DFRYRA  108 (184)
T ss_pred             CCeeeEEEEEEEcCCC-eEEEEEccCCCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccccccccc-eEEEEE
Confidence            3477888899999877 9999998532    4788876 8999999999999999999999998854432211 111111


Q ss_pred             chhhhhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh
Q 026407          142 PLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV  203 (239)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~  203 (239)
                      ...         .+........+|+....+   ...     .+.+|+.++.|++++++.+++
T Consensus       109 ~~~---------~~~~~~~~~~vf~~~~~~---~~~-----~~~~Ev~~~~W~~~~el~~~i  153 (184)
T PRK03759        109 TDP---------NGIVENEVCPVFAARVTS---ALQ-----PNPDEVMDYQWVDPADLLRAV  153 (184)
T ss_pred             ecC---------CCceeeEEEEEEEEEECC---CCC-----CChhHeeeEEEECHHHHHHHH
Confidence            100         000011122344443331   112     234588999999999999988

>PRK15393 NUDIX hydrolase YfcD; Provisional

Probab=99.68  E-value=4e-16  Score=126.89  Aligned_cols=125  Identities=20%  Similarity=0.247  Sum_probs=77.7

Q ss_pred             ceeeEEEEEEeCCCCEEEEEEecCC----CCcE-EcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCch
Q 026407           69 YRRNVGICLINSSKKKIFAATRIHI----PYTW-QMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPL  143 (239)
Q Consensus        69 ~~~~v~v~i~~~~~~~vLl~~r~~~----~~~w-~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~  143 (239)
                      .+.++.+++++.++ ++||++|...    +|.| .+|||++++|||+++||+||++||||+++..+.....  +.+....
T Consensus        36 ~h~~~~v~v~~~~g-~iLL~~R~~~~~~~pg~~~~~pGG~ve~GEs~~eAA~REL~EEtGl~~~~~~~~~~--~~~~~~~  112 (180)
T PRK15393         36 RHRATYIVVHDGMG-KILVQRRTETKDFLPGMLDATAGGVVQAGEQLLESARREAEEELGIAGVPFAEHGQ--FYFEDEN  112 (180)
T ss_pred             ceEEEEEEEECCCC-eEEEEEeCCCCCCCCCcccccCCCcCCCCCCHHHHHHHHHHHHHCCCCccceecee--EEecCCC
Confidence            45667777888777 9999998643    3556 5899999999999999999999999998644322111  1111100


Q ss_pred             hhhhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhcchHH-HHHHHhhhhhc
Q 026407          144 KVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRKPCG-LIFRYFSPFCL  219 (239)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~-~~~~~l~~~~~  219 (239)
                                    ......+|.+...   ....     ...+|+.+++|++++++.++.. .+. ..+..+..++.
T Consensus       113 --------------~~~~~~~f~~~~~---~~~~-----~~~~E~~~~~W~~~~el~~~~~-~~~~~~~~~l~~~l~  166 (180)
T PRK15393        113 --------------CRVWGALFSCVSH---GPFA-----LQEEEVSEVCWMTPEEITARCD-EFTPDSLKALALWLT  166 (180)
T ss_pred             --------------ceEEEEEEEEEeC---CCCC-----CChHHeeEEEECCHHHHhhhhh-hcCccHHHHHHHHHH
Confidence                          0001122322221   1111     2345899999999999998741 121 44455555544

>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional

Probab=99.68  E-value=6.3e-16  Score=119.39  Aligned_cols=54  Identities=33%  Similarity=0.502  Sum_probs=44.8

Q ss_pred             EEEEEEeCCCCEEEEEEecCC---CCcEEcCceecCCCCCHHHHHHHHHHHHhCCccc
Q 026407           73 VGICLINSSKKKIFAATRIHI---PYTWQMPQGGADEGEDLINAALRELREETGVTSA  127 (239)
Q Consensus        73 v~v~i~~~~~~~vLl~~r~~~---~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~  127 (239)
                      ++.++++.++ ++||++|...   +|.|+||||++|.||++++|+.||+.||||+++.
T Consensus         6 ~~~~ii~~~~-~vLL~~R~~~~~~~g~w~~PgG~ve~gE~~~~a~~RE~~EE~Gl~~~   62 (135)
T PRK10546          6 VVAAIIERDG-KILLAQRPAHSDQAGLWEFAGGKVEPGESQPQALIRELREELGIEAT   62 (135)
T ss_pred             EEEEEEecCC-EEEEEEccCCCCCCCcEECCcccCCCCCCHHHHHHHHHHHHHCCccc
Confidence            3344445556 8999998654   3899999999999999999999999999999863

>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.68  E-value=1e-15  Score=120.03  Aligned_cols=55  Identities=40%  Similarity=0.674  Sum_probs=48.4

Q ss_pred             eEEEEEEeCCCCEEEEEEecC----CCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccc
Q 026407           72 NVGICLINSSKKKIFAATRIH----IPYTWQMPQGGADEGEDLINAALRELREETGVTSA  127 (239)
Q Consensus        72 ~v~v~i~~~~~~~vLl~~r~~----~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~  127 (239)
                      .|++++++.++ ++||+||..    .+|.|.+|||++++||++++||+||+.||||+.+.
T Consensus         3 ~v~viv~~~~~-~vLl~rr~~~~~~~~g~w~~PgG~v~~~E~~~~aa~RE~~EE~gi~~~   61 (143)
T cd04694           3 GVAVLLQSSDQ-KLLLTRRASSLRIFPNVWVPPGGHVELGENLLEAGLRELNEETGLTLD   61 (143)
T ss_pred             EEEEEEEcCCC-EEEEEEECCCCCCCCCeEECcccccCCCCCHHHHHHHHHHHHHCCCcc
Confidence            46677788877 999999974    34899999999999999999999999999999874

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.67  E-value=6.5e-16  Score=119.23  Aligned_cols=52  Identities=35%  Similarity=0.581  Sum_probs=45.1

Q ss_pred             eEEEEEEeCCCCEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCcc
Q 026407           72 NVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTS  126 (239)
Q Consensus        72 ~v~v~i~~~~~~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~  126 (239)
                      +|.++|++. + +|||+++... +.|.||||++|+||++.+||+||++||||+++
T Consensus         2 ~~~~ii~~~-~-~vLLv~~~~~-~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~   53 (131)
T cd04686           2 AVRAIILQG-D-KILLLYTKRY-GDYKFPGGGVEKGEDHIEGLIRELQEETGATN   53 (131)
T ss_pred             cEEEEEEEC-C-EEEEEEEcCC-CcEECccccCCCCCCHHHHHHHHHHHHHCCcc
Confidence            466777765 4 8999888653 68999999999999999999999999999986

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.67  E-value=9.1e-16  Score=117.10  Aligned_cols=54  Identities=30%  Similarity=0.370  Sum_probs=45.6

Q ss_pred             eeEEEEEEeCCCCEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccc
Q 026407           71 RNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSA  127 (239)
Q Consensus        71 ~~v~v~i~~~~~~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~  127 (239)
                      ..|.+++++ ++ ++||++|.. .+.|.+|||++|.|||+.+||.||++||||+++.
T Consensus         2 ~~~~~vi~~-~~-~vLlv~~~~-~~~~~lPGG~ve~gEt~~~aa~REl~EEtGl~~~   55 (125)
T cd04689           2 LRARAIVRA-GN-KVLLARVIG-QPHYFLPGGHVEPGETAENALRRELQEELGVAVS   55 (125)
T ss_pred             eEEEEEEEe-CC-EEEEEEecC-CCCEECCCCcCCCCCCHHHHHHHHHHHHhCceee
Confidence            355666665 44 899988865 4799999999999999999999999999999874

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp

>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional

Probab=99.67  E-value=1.2e-15  Score=116.34  Aligned_cols=55  Identities=31%  Similarity=0.459  Sum_probs=46.3

Q ss_pred             eEEEEEEeCCCCEEEEEEecCC---CCcEEcCceecCCCCCHHHHHHHHHHHHhCCccc
Q 026407           72 NVGICLINSSKKKIFAATRIHI---PYTWQMPQGGADEGEDLINAALRELREETGVTSA  127 (239)
Q Consensus        72 ~v~v~i~~~~~~~vLl~~r~~~---~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~  127 (239)
                      .+++++.+.++ ++||+||...   +|.|+||||++++||++++||.||+.||||+++.
T Consensus         6 ~~~~ii~~~~~-~vll~rR~~~~~~~g~w~~PgG~~~~gE~~~~a~~Re~~EE~gl~~~   63 (129)
T PRK10776          6 IAVGIIRNPNN-EIFITRRAADAHMAGKWEFPGGKIEAGETPEQALIRELQEEVGITVQ   63 (129)
T ss_pred             EEEEEEECCCC-EEEEEEecCCCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCcee
Confidence            34445566666 9999999764   3899999999999999999999999999999863

>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.67  E-value=7.1e-16  Score=115.60  Aligned_cols=101  Identities=20%  Similarity=0.332  Sum_probs=68.0

Q ss_pred             EEEEEeCCCCEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhhhccccc
Q 026407           74 GICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQKLNRRW  153 (239)
Q Consensus        74 ~v~i~~~~~~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (239)
                      ++++. .++ ++||++|..  |.|.+|||++++||++++||.||++||||+++..+...    ..+...           
T Consensus         4 ~~i~~-~~~-~vLlv~r~~--~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~----~~~~~~-----------   64 (112)
T cd04667           4 TVICR-RGG-RVLLVRKSG--SRWALPGGKIEPGETPLQAARRELQEETGLQGLDLLYL----FHVDGG-----------   64 (112)
T ss_pred             EEEEe-cCC-EEEEEEcCC--CcEeCCCCcCCCCCCHHHHHHHHHHHHhCCcccceEEE----EEEeCC-----------
Confidence            34443 445 899999875  89999999999999999999999999999987543221    111110           


Q ss_pred             CCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhcc
Q 026407          154 GTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRK  205 (239)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~  205 (239)
                           ....++|++.+...  .     .....+|+.+++|++++++.++...
T Consensus        65 -----~~~~~~f~~~~~~~--~-----~~~~~~e~~~~~W~~~~el~~~~~~  104 (112)
T cd04667          65 -----STRHHVFVASVPPS--A-----QPKPSNEIADCRWLSLDALGDLNAS  104 (112)
T ss_pred             -----CEEEEEEEEEcCCc--C-----CCCCchheeEEEEecHHHhhhcccc
Confidence                 11233444433321  1     1123458889999999999987533

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.67  E-value=1e-15  Score=115.44  Aligned_cols=54  Identities=20%  Similarity=0.379  Sum_probs=46.8

Q ss_pred             EEEEEEeCCCCEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccce
Q 026407           73 VGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAE  128 (239)
Q Consensus        73 v~v~i~~~~~~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~  128 (239)
                      +.+++++.++ ++||++|.. .+.|.+|||++++||++++||+||++||||+++..
T Consensus         3 ~~~~v~~~~~-~vLl~~r~~-~~~w~~PgG~ve~~Es~~~aa~REl~EEtGl~~~~   56 (118)
T cd04690           3 AAALILVRDG-RVLLVRKRG-TDVFYLPGGKIEAGETPLQALIRELSEELGLDLDP   56 (118)
T ss_pred             EEEEEEecCC-eEEEEEECC-CCcEECCCCccCCCCCHHHHHHHHHHHHHCCccCh
Confidence            5566777777 899988865 48999999999999999999999999999998743

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]

Probab=99.67  E-value=1.3e-16  Score=135.97  Aligned_cols=146  Identities=17%  Similarity=0.192  Sum_probs=99.5

Q ss_pred             cCCccccccccccccccccCCCCCCCCCCcCCCccccccccCCCCCCCCceeeEEEEEEeCCCCEEEEEEecCCC-CcEE
Q 026407           20 SYPTKLVKFASVPLELQQLPRKPLCCSCDDSSSSLSSFTALSTETPPDGYRRNVGICLINSSKKKIFAATRIHIP-YTWQ   98 (239)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~a~~~~~~~~~~~~~~~~~~~v~v~i~~~~~~~vLl~~r~~~~-~~w~   98 (239)
                      =||.|++....-..+.+..|.+.. |+.       .+...++.+       +.|..+++++++++.||.|...++ |+|.
T Consensus       152 FCp~CG~~tkp~e~g~k~~Cs~~~-C~~-------~n~~yPr~d-------PvVIm~li~~d~~~~LL~R~~r~~~gl~t  216 (345)
T KOG3084|consen  152 FCPGCGSPTKPEEAGTKLQCSDET-CPS-------CNVIYPRTD-------PVVIMLLIDHDGKHALLGRQKRYPPGLWT  216 (345)
T ss_pred             cCcccCCCcccccCCccceeeccc-CCc-------CCeeccCCC-------CeEEEEEEcCCCCEeeeecccCCCCchhh
Confidence            499999998888888776666444 331       222233333       688889999999888887765544 9999


Q ss_pred             cCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeec-CchhhhhhcccccCCcccCceeEEEEEEEccccceec
Q 026407           99 MPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYD-FPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEIN  177 (239)
Q Consensus        99 ~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (239)
                      .++|.+|+|||++|||+||++||+|+++..+......  .|+ +|.+.|.-                 .+.+.....+++
T Consensus       217 ~lAGFlEpGES~eeav~REtwEEtGi~V~~I~~~asQ--PWP~~p~SLMIg-----------------c~ala~~~~~I~  277 (345)
T KOG3084|consen  217 CLAGFLEPGESIEEAVRRETWEETGIEVEVISYVASQ--PWPLMPQSLMIG-----------------CLALAKLNGKIS  277 (345)
T ss_pred             hhhccCCccccHHHHHHHHHHHHhCceeeeEeeeecC--CCCCCchHHHHH-----------------HHHHHhhCCccc
Confidence            9999999999999999999999999999766432221  233 44443331                 000000112233


Q ss_pred             ccCCCCCCCccceeEEeCHhHHHHhh
Q 026407          178 LLGDGSEKPEFNEWRWMFPEQVLERV  203 (239)
Q Consensus       178 ~~~~~~~~~E~~~~~Wv~~eel~~~~  203 (239)
                      .+    .+.|..+++|++-+|+.+.+
T Consensus       278 vd----~dlEleDaqwF~r~ev~~aL  299 (345)
T KOG3084|consen  278 VD----KDLELEDAQWFDREEVKSAL  299 (345)
T ss_pred             cC----cchhhhhcccccHHHHHHHH
Confidence            32    23488999999999999866

>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.66  E-value=1e-15  Score=116.84  Aligned_cols=56  Identities=32%  Similarity=0.544  Sum_probs=47.5

Q ss_pred             eEEEEEEeCCCCEEEEEEecCC----CCcEEcCceecCCCCCHHHHHHHHHHHHhCCccce
Q 026407           72 NVGICLINSSKKKIFAATRIHI----PYTWQMPQGGADEGEDLINAALRELREETGVTSAE  128 (239)
Q Consensus        72 ~v~v~i~~~~~~~vLl~~r~~~----~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~  128 (239)
                      +|.+++++.++ ++||++|...    +|.|++|||++++|||+.+||.||++||||+++..
T Consensus         3 ~v~~vv~~~~~-~iLl~kr~~~~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~   62 (129)
T cd04699           3 AVAALIVKDVG-RILILKRSKDERTAPGKWELPGGKVEEGETFEEALKREVYEETGLTVTP   62 (129)
T ss_pred             eEEEEEECCCC-cEEEEEecCCCCCCCCcCcCCccCccCCCCHHHHHHHHHHHhhCcEEEe
Confidence            45666777656 8999988753    58999999999999999999999999999998743

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.66  E-value=1.1e-15  Score=116.40  Aligned_cols=53  Identities=26%  Similarity=0.438  Sum_probs=46.2

Q ss_pred             eeEEEEEEeCCCCEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCcc
Q 026407           71 RNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTS  126 (239)
Q Consensus        71 ~~v~v~i~~~~~~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~  126 (239)
                      ..|.++++++ + ++||.+|.. .+.|.+|||+++.|||+++||+||++||||+.+
T Consensus         3 ~~v~~~i~~~-~-~vLL~~~~~-~~~w~~PGG~ve~gEs~~~aa~REl~EEtG~~~   55 (123)
T cd04672           3 VDVRAAIFKD-G-KILLVREKS-DGLWSLPGGWADVGLSPAENVVKEVKEETGLDV   55 (123)
T ss_pred             ceEEEEEEEC-C-EEEEEEEcC-CCcEeCCccccCCCCCHHHHHHHHHHHHhCCee
Confidence            4566777776 4 888888865 589999999999999999999999999999986

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional

Probab=99.66  E-value=3.4e-15  Score=121.97  Aligned_cols=110  Identities=22%  Similarity=0.153  Sum_probs=73.3

Q ss_pred             eEEEEEEeCCCCEEEEEEecCCC---CcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhhh
Q 026407           72 NVGICLINSSKKKIFAATRIHIP---YTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQK  148 (239)
Q Consensus        72 ~v~v~i~~~~~~~vLl~~r~~~~---~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~  148 (239)
                      +|.++.+++++ ++||+++...+   +.|+||||.+|+||++++||+||++||||+++..+..........+        
T Consensus        49 ~v~v~~~~~~~-~vlLvrq~r~~~~~~~~elPaG~ve~gE~~~~aA~REl~EEtG~~~~~l~~l~~~~~~~~--------  119 (185)
T PRK11762         49 AVMIVPILDDD-TLLLIREYAAGTERYELGFPKGLIDPGETPLEAANRELKEEVGFGARQLTFLKELSLAPS--------  119 (185)
T ss_pred             EEEEEEEeCCC-EEEEEEeecCCCCCcEEEccceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEEecCCC--------
Confidence            56666677666 88888875432   7899999999999999999999999999999865543322211111        


Q ss_pred             cccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhc
Q 026407          149 LNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVR  204 (239)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~  204 (239)
                              +.....+.|++....  .    .....++.|..++.|++++++.+++.
T Consensus       120 --------~~~~~~~~f~a~~~~--~----~~~~~~e~E~i~~~~~~~~e~~~~~~  161 (185)
T PRK11762        120 --------YFSSKMNIVLAEDLY--P----ERLEGDEPEPLEVVRWPLADLDELLA  161 (185)
T ss_pred             --------ccCcEEEEEEEEccc--c----ccCCCCCCceeEEEEEcHHHHHHHHH
Confidence                    112234444433211  1    11122345777899999999999883

>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.66  E-value=1.1e-15  Score=118.35  Aligned_cols=114  Identities=25%  Similarity=0.397  Sum_probs=75.5

Q ss_pred             eEEEEEEeCCCCEEEEEEecCC----CCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeec---cCceeeecCchh
Q 026407           72 NVGICLINSSKKKIFAATRIHI----PYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAE---TPYWLTYDFPLK  144 (239)
Q Consensus        72 ~v~v~i~~~~~~~vLl~~r~~~----~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~---~~~~~~~~~~~~  144 (239)
                      ++.+++++.++ +|||+++...    ++.|.+|||+++.||++.+||.||++||||+++..+...   ....+.+.  . 
T Consensus         2 ~~~~~i~~~~g-~vLl~r~~~~~~~~~~~w~~PgG~ve~gE~~~~a~~Re~~EE~G~~~~~~~~~~~~~~~~f~~~--~-   77 (133)
T cd04685           2 AARVVLLDPDD-RVLLLRGDDPDSPGPDWWFTPGGGVEPGESPEQAARRELREETGITVADLGPPVWRRDAAFTFL--G-   77 (133)
T ss_pred             eEEEEEEcCCC-eEEEEEEeCCCCCCCCEEECCcCCCCCCCCHHHHHHHHHHHHHCCccccccceEEEEEEEEEec--C-
Confidence            57789999888 8999887642    379999999999999999999999999999987333211   11111111  1 


Q ss_pred             hhhhcccccCCcccCceeEEEEEEEccccce-ecccCCCCCCCccceeEEeCHhHHHHh
Q 026407          145 VKQKLNRRWGTNYKGQAQKWFLFKFTGKEEE-INLLGDGSEKPEFNEWRWMFPEQVLER  202 (239)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~E~~~~~Wv~~eel~~~  202 (239)
                                 ....+...+|++........ ...  ...+..++..++|++++++.+.
T Consensus        78 -----------~~~~~~~~~f~~~~~~~~~~~~~~--~~~E~~~~~~~~W~~~~el~~~  123 (133)
T cd04685          78 -----------VDGRQEERFFLARTPRTEPSPAGW--TALERRSILGWRWWTRAELAAT  123 (133)
T ss_pred             -----------ccceeeEEEEEEEcCCccccCCCC--ChhhhhhcccccCCCHHHHhhC
Confidence                       11123456777766542111 111  1122345678999999999875

Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family

Probab=99.65  E-value=9.9e-16  Score=125.05  Aligned_cols=117  Identities=15%  Similarity=0.236  Sum_probs=78.7

Q ss_pred             eeEEEEEEeCCCCEEEEEEecC--------CCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCc
Q 026407           71 RNVGICLINSSKKKIFAATRIH--------IPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFP  142 (239)
Q Consensus        71 ~~v~v~i~~~~~~~vLl~~r~~--------~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~  142 (239)
                      .+|++++++.+++++||+++..        .+..|++|||++|+||++++||+||++||||+.+..+......+...   
T Consensus        45 ~~v~vl~~~~~~~~vlLvrq~R~~~~~~~~~~~~lelPaG~ve~gE~~~~aA~REl~EEtG~~~~~~~~~~~~~~~~---  121 (185)
T TIGR00052        45 NAAAVLLYDPKKDTVVLIEQFRIAAYVNGEEPWLLELSAGMVEKGESPEDVARREAIEEAGYQVKNLRKLLSFYSSP---  121 (185)
T ss_pred             CeEEEEEEECCCCEEEEEECceeeeeecCCcceEEEECcEecCCCCCHHHHHHHHccccccceecceEEEEEEEcCC---
Confidence            4677777876544899877643        23689999999999999999999999999999986554333221111   


Q ss_pred             hhhhhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhcch
Q 026407          143 LKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRKP  206 (239)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~  206 (239)
                                   .+.....++|+......... ..  ....++|..++.|++++++.+++.++
T Consensus       122 -------------g~~~~~~~~f~a~~~~~~~~-~~--~~~~~~E~ie~~~~~~~e~~~~~~~G  169 (185)
T TIGR00052       122 -------------GGVTELIHLFIAEVDDNQAA-GI--GGGADEEEIEVLHLVFSQALQWIKEG  169 (185)
T ss_pred             -------------CCCcEEEEEEEEEEchhhcC-CC--CCCCCccceEEEEeCHHHHHHHHHcC
Confidence                         12234455666655432111 11  12234566789999999999988444

>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]

Probab=99.65  E-value=4.2e-16  Score=132.23  Aligned_cols=138  Identities=20%  Similarity=0.155  Sum_probs=93.6

Q ss_pred             cCCccccccccccccccccCCCCCCCCCCcCCCccccccccCCCCCCCCceeeEEEEEEeCCCCEEEEEEecCC-CCcEE
Q 026407           20 SYPTKLVKFASVPLELQQLPRKPLCCSCDDSSSSLSSFTALSTETPPDGYRRNVGICLINSSKKKIFAATRIHI-PYTWQ   98 (239)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~a~~~~~~~~~~~~~~~~~~~v~v~i~~~~~~~vLl~~r~~~-~~~w~   98 (239)
                      =|+.|+.+......+..-.|+++.            +..+++.+       ++|.+++++.+  ++||.++..+ +|++.
T Consensus       113 FCg~CG~~~~~~~~g~~~~C~~cg------------~~~fPR~d-------P~vIv~v~~~~--~ilLa~~~~h~~g~yS  171 (279)
T COG2816         113 FCGRCGTKTYPREGGWARVCPKCG------------HEHFPRID-------PCVIVAVIRGD--EILLARHPRHFPGMYS  171 (279)
T ss_pred             CCCCCCCcCccccCceeeeCCCCC------------CccCCCCC-------CeEEEEEecCC--ceeecCCCCCCCccee
Confidence            477777777666666544444322            12233333       57777777765  4666665543 59999


Q ss_pred             cCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhhhcccccCCcccCceeEEEEEEEccccceecc
Q 026407           99 MPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINL  178 (239)
Q Consensus        99 ~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (239)
                      .-+|.||+|||+++|++||++||+|+++.++.....+  .|.+|+++|.                  -|.......++..
T Consensus       172 ~LAGFVE~GETlE~AV~REv~EE~Gi~V~~vrY~~SQ--PWPfP~SLMi------------------gf~aey~sgeI~~  231 (279)
T COG2816         172 LLAGFVEPGETLEQAVAREVFEEVGIKVKNVRYVGSQ--PWPFPHSLML------------------GFMAEYDSGEITP  231 (279)
T ss_pred             eeeecccCCccHHHHHHHHHHHhhCeEEeeeeEEecc--CCCCchhhhh------------------hheeeeccccccC
Confidence            9999999999999999999999999999777544433  4777776644                  2233333333444


Q ss_pred             cCCCCCCCccceeEEeCHhHHHHhh
Q 026407          179 LGDGSEKPEFNEWRWMFPEQVLERV  203 (239)
Q Consensus       179 ~~~~~~~~E~~~~~Wv~~eel~~~~  203 (239)
                      +     ..|+.+++|++.+|+...+
T Consensus       232 d-----~~Eleda~WFs~~evl~~L  251 (279)
T COG2816         232 D-----EGELEDARWFSRDEVLPAL  251 (279)
T ss_pred             C-----cchhhhccccCHhHHhhhc
Confidence            3     2499999999999965544

>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]

Probab=99.65  E-value=1.5e-15  Score=119.32  Aligned_cols=111  Identities=25%  Similarity=0.383  Sum_probs=71.5

Q ss_pred             eeEEEEEEeCCCCEEEEEEecCCC--CcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhhh
Q 026407           71 RNVGICLINSSKKKIFAATRIHIP--YTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQK  148 (239)
Q Consensus        71 ~~v~v~i~~~~~~~vLl~~r~~~~--~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~  148 (239)
                      ..|++++...+  +|||+||...+  |.|.+|||++|.|||+++||+||++||||+++..+.    ....++.+.+.   
T Consensus        11 ~~v~~~i~~~~--~iLLvrR~~~p~~g~WalPGG~ve~GEt~eeaa~REl~EETgL~~~~~~----~~~v~~~~~rd---   81 (145)
T COG1051          11 VAVGALIVRNG--RILLVRRANEPGAGYWALPGGFVEIGETLEEAARRELKEETGLRVRVLE----LLAVFDDPGRD---   81 (145)
T ss_pred             eeeeEEEEeCC--EEEEEEecCCCCCCcEeCCCccCCCCCCHHHHHHHHHHHHhCCccccee----EEEEecCCCCC---
Confidence            45666666554  89999998766  899999999999999999999999999999963221    12234433321   


Q ss_pred             cccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh
Q 026407          149 LNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV  203 (239)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~  203 (239)
                              .++....++.+........     ...+.++...+.|++++++....
T Consensus        82 --------~r~~~v~~~~~~~~~~g~~-----~~~~~~d~~~~~~~~~~~l~~~~  123 (145)
T COG1051          82 --------PRGHHVSFLFFAAEPEGEL-----LAGDGDDAAEVGWFPLDELPELP  123 (145)
T ss_pred             --------CceeEEEEEEEEEecCCCc-----ccCChhhHhhcceecHhHccccc
Confidence                    0112222222222211111     11122367889999999999754

>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.65  E-value=1.9e-15  Score=116.40  Aligned_cols=103  Identities=23%  Similarity=0.292  Sum_probs=69.1

Q ss_pred             eeeEEEEEEeCCCCEEEEEEecCC--CCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhh
Q 026407           70 RRNVGICLINSSKKKIFAATRIHI--PYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQ  147 (239)
Q Consensus        70 ~~~v~v~i~~~~~~~vLl~~r~~~--~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~  147 (239)
                      +..|++++++. + ++||.+|...  .|.|.+|||++|.||++++||.||++||||+++. +...   ...+..+.    
T Consensus        13 ~~~v~~ii~~~-~-~vLL~kr~~~~~~g~w~lPgG~ve~gE~~~~a~~REl~EEtGl~~~-~~~~---~~~~~~~~----   82 (130)
T cd04511          13 KIIVGCVPEWE-G-KVLLCRRAIEPRHGFWTLPAGFMENGETTEQGALRETWEEAGARVE-IDGL---YAVYSVPH----   82 (130)
T ss_pred             cEEEEEEEecC-C-EEEEEEecCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCEEE-eeeE---EEEEecCC----
Confidence            34556666654 5 8999988643  3899999999999999999999999999999863 2211   11122211    


Q ss_pred             hcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHH
Q 026407          148 KLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVL  200 (239)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~  200 (239)
                                ......+|++.....  ...      ...|..+++|+++++|.
T Consensus        83 ----------~~~~~~~f~~~~~~~--~~~------~~~e~~~~~~~~~~~l~  117 (130)
T cd04511          83 ----------ISQVYMFYRARLLDL--DFA------PGPESLEVRLFTEEEIP  117 (130)
T ss_pred             ----------ceEEEEEEEEEEcCC--ccc------CCcchhceEEECHHHCC
Confidence                      112344555555432  111      23477889999999996

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici

>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional

Probab=99.65  E-value=2.4e-15  Score=124.35  Aligned_cols=117  Identities=15%  Similarity=0.170  Sum_probs=78.7

Q ss_pred             eeEEEEEEeCCCCEEEEEEecCCC--------CcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCc
Q 026407           71 RNVGICLINSSKKKIFAATRIHIP--------YTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFP  142 (239)
Q Consensus        71 ~~v~v~i~~~~~~~vLl~~r~~~~--------~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~  142 (239)
                      .+|+++.+++++++++|++...++        -.|++|+|.+|+||++++||+|||.||||+.+..+......+...+  
T Consensus        50 ~~V~il~~~~~~~~vlLvrQyR~~~~~~~~~~~~lE~PAG~vd~gE~p~~aA~REL~EETGy~a~~~~~l~~~~~spg--  127 (202)
T PRK10729         50 HAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVGRTKPVLSYLASPG--  127 (202)
T ss_pred             CeEEEEEEECCCCEEEEEEeeecccccCCCCCeEEEccceEcCCCCCHHHHHHHHHHHHhCceeeEEEEEEEEEcCCC--
Confidence            467777787654488887765443        3699999999999999999999999999999876654333322222  


Q ss_pred             hhhhhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhcc
Q 026407          143 LKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRK  205 (239)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~  205 (239)
                                    +..+..++|+......... . .....++.|..++.|++++++.+++.+
T Consensus       128 --------------~~~e~~~~fla~~~~~~~~-~-~~~~~de~E~i~v~~~~~~e~~~~~~~  174 (202)
T PRK10729        128 --------------GTSERSSIMVGEVDATTAS-G-IHGLADENEDIRVHVVSREQAYQWVEE  174 (202)
T ss_pred             --------------cCceEEEEEEEEEcchhcc-c-CCCCCCCCCceEEEEEcHHHHHHHHHc
Confidence                          2234455555554222110 0 012234567788999999999998843

>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1

Probab=99.64  E-value=3.2e-15  Score=119.15  Aligned_cols=114  Identities=21%  Similarity=0.324  Sum_probs=75.1

Q ss_pred             CCceeeEEEEEEeCCCCEEEEEEecCC----CCcEEcC-ceecCCCCCHHHHHHHHHHHHhCCccceee--eccCceeee
Q 026407           67 DGYRRNVGICLINSSKKKIFAATRIHI----PYTWQMP-QGGADEGEDLINAALRELREETGVTSAEFL--AETPYWLTY  139 (239)
Q Consensus        67 ~~~~~~v~v~i~~~~~~~vLl~~r~~~----~~~w~~P-gG~ve~gEs~~~aa~REl~EEtGl~~~~~~--~~~~~~~~~  139 (239)
                      ..++.++++++++.++ ++||+||...    +|.|++| ||+++.||  .+||+||++||||+++..+.  .........
T Consensus        24 g~~h~~v~v~v~~~~g-~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE--~eaa~REl~EE~Gl~~~~~~l~~~~~~~~~~  100 (158)
T TIGR02150        24 TPLHRAFSVFLFNEEG-QLLLQRRALSKITWPGVWTNSCCSHPLPGE--LEAAIRRLREELGIPADDVPLTVLPRFSYRA  100 (158)
T ss_pred             CCeEEEEEEEEEcCCC-eEEEEeccCCCcCCCCCccccccCCCCccc--HHHHHHHHHHHHCCCccccceEEcceEEEEE
Confidence            4578888899998887 9999999753    4999997 89999999  49999999999999874331  111111111


Q ss_pred             cCchhhhhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhc
Q 026407          140 DFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVR  204 (239)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~  204 (239)
                      .+++            . ......+|.+....   ....     ..+|+.++.|++++++.+++.
T Consensus       101 ~~~~------------g-~~~~~~~f~~~~~~---~~~~-----~~~Ev~~~~W~~~~el~~~~~  144 (158)
T TIGR02150       101 RDAW------------G-EHELCPVFFARAPV---PLNP-----NPEEVAEYRWVSLEELKEILK  144 (158)
T ss_pred             ecCC------------C-cEEEEEEEEEecCC---cccC-----ChhHeeeEEEeCHHHHHHHHh
Confidence            1111            0 01122333333221   1222     245999999999999999873

This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.

>TIGR00586 mutt mutator mutT protein

Probab=99.64  E-value=3.8e-15  Score=113.73  Aligned_cols=55  Identities=25%  Similarity=0.312  Sum_probs=46.6

Q ss_pred             eeEEEEEEeCCCCEEEEEEecCCC---CcEEcCceecCCCCCHHHHHHHHHHHHhCCcc
Q 026407           71 RNVGICLINSSKKKIFAATRIHIP---YTWQMPQGGADEGEDLINAALRELREETGVTS  126 (239)
Q Consensus        71 ~~v~v~i~~~~~~~vLl~~r~~~~---~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~  126 (239)
                      ..+++++++.++ ++|+++|...+   |.|+||||+++.||++++|+.||+.||||+++
T Consensus         5 ~~~~~ii~~~~~-~vLl~~R~~~~~~~g~w~~Pgg~ve~ge~~~~~~~RE~~EE~g~~~   62 (128)
T TIGR00586         5 QIAVGIIRNENG-EIIITRRADGHMFAKLLEFPGGKEEGGETPEQAVVRELEEEIGIPQ   62 (128)
T ss_pred             EEEEEEEECCCC-EEEEEEEeCCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCcc
Confidence            344555567666 89999997543   89999999999999999999999999999986

All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional

Probab=99.61  E-value=1.3e-14  Score=128.99  Aligned_cols=114  Identities=25%  Similarity=0.377  Sum_probs=72.7

Q ss_pred             eEEEEEEeCCCCEEEEEEecCCC--CcEEcCceecCCCCCHHHHHHHHHHHHhCCccc--eeeeccCceeeecCchhhhh
Q 026407           72 NVGICLINSSKKKIFAATRIHIP--YTWQMPQGGADEGEDLINAALRELREETGVTSA--EFLAETPYWLTYDFPLKVKQ  147 (239)
Q Consensus        72 ~v~v~i~~~~~~~vLl~~r~~~~--~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~--~~~~~~~~~~~~~~~~~~~~  147 (239)
                      .|.++++. ++ +|||++|...+  |.|.+|||++|+|||+++||+||++||||+++.  .+.........+.+++..  
T Consensus       205 tv~avv~~-~g-~VLLvrR~~~p~~g~W~lPGG~ve~gEt~~~Aa~REl~EETGl~v~~~~l~~~~~~~~~f~~p~r~--  280 (340)
T PRK05379        205 TVDAVVVQ-SG-HVLLVRRRAEPGKGLWALPGGFLEQDETLLDACLRELREETGLKLPEPVLRGSIRDQQVFDHPGRS--  280 (340)
T ss_pred             EEEEEEEE-CC-EEEEEEecCCCCCCeEECCcccCCCCCCHHHHHHHHHHHHHCCcccccccceeeeeeEEEcCCCCC--
Confidence            44455554 45 89999987543  899999999999999999999999999999863  222222222233343321  


Q ss_pred             hcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHh
Q 026407          148 KLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLER  202 (239)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~  202 (239)
                              .......++|.+.+.... ..    .....+|..+++|++++++..+
T Consensus       281 --------~~~~~i~~~f~~~~~~~~-~~----~~~~~de~~~~~W~~~~el~~~  322 (340)
T PRK05379        281 --------LRGRTITHAFLFEFPAGE-LP----RVKGGDDADKARWVPLAELLAM  322 (340)
T ss_pred             --------CCCcEEEEEEEEEecCCc-cC----ccCCCCceeeEEEEEHHHhhhh
Confidence                    001123445555554321 11    1123347889999999999874

>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)

Probab=99.59  E-value=1.4e-14  Score=109.14  Aligned_cols=105  Identities=27%  Similarity=0.332  Sum_probs=67.9

Q ss_pred             EEEEEEeCCCCEEEEEEecCC---CCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhhhc
Q 026407           73 VGICLINSSKKKIFAATRIHI---PYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQKL  149 (239)
Q Consensus        73 v~v~i~~~~~~~vLl~~r~~~---~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~  149 (239)
                      +.+++++.++ ++||++|...   +|.|.||||+++.+|++++||.||+.||||+++......  ....+.+++      
T Consensus         4 ~~~~i~~~~~-~~Ll~~r~~~~~~~g~w~~p~G~~~~~e~~~~~a~Re~~EE~g~~~~~~~~~--~~~~~~~~~------   74 (124)
T cd03425           4 VAAIIIDDDG-RILIAQRPAGKHLGGLWEFPGGKVEPGETPEQALVRELREELGIEVEVGELL--ATVEHDYPD------   74 (124)
T ss_pred             EEEEEECCCC-EEEEEEeCCCCCCCCeEeCCCcccCCCCCHHHHHHHHHHHhhCcEEeccceE--EEEEeeCCC------
Confidence            4445566656 9999988753   489999999999999999999999999999986432111  112233322      


Q ss_pred             ccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh
Q 026407          150 NRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV  203 (239)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~  203 (239)
                                .....+++.........       ...|..++.|++++++.++.
T Consensus        75 ----------~~~~~~~~~~~~~~~~~-------~~~e~~~~~W~~~~el~~~~  111 (124)
T cd03425          75 ----------KRVTLHVFLVELWSGEP-------QLLEHQELRWVPPEELDDLD  111 (124)
T ss_pred             ----------CeEEEEEEEEeeeCCCc-------ccccCceEEEeeHHHcccCC
Confidence                      12222233222111111       12367889999999998865

This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.

>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]

Probab=99.57  E-value=3.7e-14  Score=108.48  Aligned_cols=134  Identities=24%  Similarity=0.345  Sum_probs=86.6

Q ss_pred             CCCceeeEEEEEEeCCCC--EEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCch
Q 026407           66 PDGYRRNVGICLINSSKK--KIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPL  143 (239)
Q Consensus        66 ~~~~~~~v~v~i~~~~~~--~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~  143 (239)
                      +.++|..++++.+..++.  +|||+.-..++..|-+|+|++|+||+..+||.||++||.|+.. .+......+..+....
T Consensus         5 ~~G~r~vagCi~~r~~~~~ieVLlvsSs~~~~~wi~PKGGwE~dE~~~eAA~REt~EEAGv~G-~l~~~~~g~~~~~~~~   83 (145)
T KOG2839|consen    5 PAGFRLVAGCICYRSDKEKIEVLLVSSSKKPHRWIVPKGGWEPDESVEEAALRETWEEAGVKG-KLGRLLGGFEDFLSKK   83 (145)
T ss_pred             CCCcEEEEEeeeeeecCcceEEEEEecCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHhCcee-eeeccccchhhccChh
Confidence            367889999988877775  8999988887789999999999999999999999999999985 3333222222222111


Q ss_pred             hhhhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhcchHH-HHHHHhhhh
Q 026407          144 KVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRKPCG-LIFRYFSPF  217 (239)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~-~~~~~l~~~  217 (239)
                      .              .....-+++.+... .....  .+....++.+.+|+.++|..+...+.-. .++.++..+
T Consensus        84 ~--------------~~~~k~~~~~l~v~-e~le~--wp~~~~~~r~r~W~~ledA~~~~~~~~m~~al~e~~~~  141 (145)
T KOG2839|consen   84 H--------------RTKPKGVMYVLAVT-EELED--WPESEHEFREREWLKLEDAIELCQHKWMKAALEEFLQF  141 (145)
T ss_pred             h--------------cccccceeehhhhh-hhccc--ChhhhcccceeEEeeHHHHHHHHhhHHHHHHHHHHHHH
Confidence            0              00111122222211 11111  1223346889999999999998865544 555554443

>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.57  E-value=4.4e-14  Score=114.80  Aligned_cols=123  Identities=14%  Similarity=0.167  Sum_probs=76.7

Q ss_pred             CCceeeEEEE--EEeCC-CCEEEEEEecCC----CCcE-EcCceecCCCCCHHHHHHHHHHHHhCCccceeee-ccCcee
Q 026407           67 DGYRRNVGIC--LINSS-KKKIFAATRIHI----PYTW-QMPQGGADEGEDLINAALRELREETGVTSAEFLA-ETPYWL  137 (239)
Q Consensus        67 ~~~~~~v~v~--i~~~~-~~~vLl~~r~~~----~~~w-~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~-~~~~~~  137 (239)
                      .-++.+|.+.  +.|.+ +.+++++||...    ||+| .+|||++++||++++||+||++||||++...+.. ......
T Consensus        29 g~~h~~v~~~~~~~~~~~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE~~~~aA~REl~EE~Gl~~~~~~~l~~~g~~  108 (180)
T cd03676          29 GLVTYGVHLNGYVRDEDGGLRIWIPRRSPTKATWPGMLDNLVAGGLGHGEGPEETLVKECDEEAGLPEDLVRQLKPVGVV  108 (180)
T ss_pred             CceEEEEEEEEEEEcCCCCeEEEEEeccCCCCCCCCceeeecccCCCCCCCHHHHHHHHHHHHhCCCHHHHhhceeccEE
Confidence            3466677754  44554 239999999754    5999 5999999999999999999999999998754321 000111


Q ss_pred             eecCc-hhhhhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhcc
Q 026407          138 TYDFP-LKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRK  205 (239)
Q Consensus       138 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~  205 (239)
                      .+.+. ..          ..+..+..++|.+.+... ....     .+++|+.++.|++++|+.+++..
T Consensus       109 ~~~~~~~~----------~~~~~e~~~~f~~~~~~~-~~~~-----~~~~Ev~~~~~~~~~el~~~l~~  161 (180)
T cd03676         109 SYLREGEA----------GGLQPEVEYVYDLELPPD-FIPA-----PQDGEVESFRLLTIDEVLRALKE  161 (180)
T ss_pred             EEEEEcCC----------CcEeeeEEEEEEEEcCCC-CeeC-----CCCCcEeEEEEECHHHHHHHHHc
Confidence            22211 00          011122233343333221 1111     23468999999999999998843

Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe

>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional

Probab=99.56  E-value=6.3e-14  Score=114.91  Aligned_cols=116  Identities=18%  Similarity=0.164  Sum_probs=78.3

Q ss_pred             eeEEEEEEeCCCCEEEEEEecCCC---------CcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecC
Q 026407           71 RNVGICLINSSKKKIFAATRIHIP---------YTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDF  141 (239)
Q Consensus        71 ~~v~v~i~~~~~~~vLl~~r~~~~---------~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~  141 (239)
                      .+|+|++++.++++++|++....+         -.|++|+|.+|+| ++++||+||+.||||+.+..+......+.+.++
T Consensus        46 ~~v~Vl~~~~~~~~vvLvrQyR~~v~~~~~~~~~~lElPAG~vd~~-~p~~aA~REL~EETGy~a~~~~~l~~~~~spG~  124 (191)
T PRK15009         46 NGATILLYNAKKKTVVLIRQFRVATWVNGNESGQLIETCAGLLDND-EPEVCIRKEAIEETGYEVGEVRKLFELYMSPGG  124 (191)
T ss_pred             CEEEEEEEECCCCEEEEEEcccccccccCCCCceEEEEeccccCCC-CHHHHHHHHHHHhhCCccceEEEeeEEEcCCcc
Confidence            467777787755488887764432         4689999999976 699999999999999998777654443333222


Q ss_pred             chhhhhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhcch
Q 026407          142 PLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRKP  206 (239)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~  206 (239)
                                      ..+..+.|+....... ...  ....+++|..++.|++++++.+++.++
T Consensus       125 ----------------s~e~~~lf~a~~~~~~-~~~--~~~~de~E~iev~~~~~~e~~~~i~~G  170 (191)
T PRK15009        125 ----------------VTELIHFFIAEYSDSQ-RAN--AGGGVEDEDIEVLELPFSQALEMIKTG  170 (191)
T ss_pred             ----------------cCcEEEEEEEEECchh-ccc--CCCCCCCceEEEEEEcHHHHHHHHHcC
Confidence                            3344555555543211 111  112245688899999999999998433

>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.56  E-value=5.4e-14  Score=105.23  Aligned_cols=111  Identities=25%  Similarity=0.387  Sum_probs=70.9

Q ss_pred             eEEEEEEeCCCCEEEEEEecCC-CCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhhhcc
Q 026407           72 NVGICLINSSKKKIFAATRIHI-PYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQKLN  150 (239)
Q Consensus        72 ~v~v~i~~~~~~~vLl~~r~~~-~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (239)
                      ++++++++.++ ++||++|... +|.|.+|||+++.||++.++|+||++||+|+.........  ...+..+.       
T Consensus         2 ~~~~i~~~~~~-~ill~kr~~~~~~~~~~p~G~~~~~e~~~~~a~RE~~EE~Gl~~~~~~~~~--~~~~~~~~-------   71 (123)
T cd02883           2 AVGAVILDEDG-RVLLVRRADSPGGLWELPGGGVEPGETLEEAAIREVREETGLDVDVLRLLG--VYEVESPD-------   71 (123)
T ss_pred             ceEEEEECCCC-CEEEEEEcCCCCCeEeCCcccccCCCCHHHHHHHHHHHhhCccceeeeEEE--EEEeeccC-------
Confidence            45677777765 8999888763 4999999999999999999999999999999864221111  11111110       


Q ss_pred             cccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh
Q 026407          151 RRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV  203 (239)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~  203 (239)
                             .+.....++|.+........    .....|...++|++++++.++.
T Consensus        72 -------~~~~~~~~~~~~~~~~~~~~----~~~~~e~~~~~w~~~~~l~~~~  113 (123)
T cd02883          72 -------EGEHAVVFVFLARLVGGEPT----LLPPDEISEVRWVTLDELPALA  113 (123)
T ss_pred             -------CCceEEEEEEEEEeCCCCcC----CCCCCccceEEEEcHHHCcccc
Confidence                   11223333333332211111    1233477889999999998754

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy

>PRK10707 putative NUDIX hydrolase; Provisional

Probab=99.54  E-value=8.8e-14  Score=113.97  Aligned_cols=113  Identities=16%  Similarity=0.058  Sum_probs=71.4

Q ss_pred             ceeeEEEEEE-eCCCCEEEEEEecC----CCCcEEcCceecCCC-CCHHHHHHHHHHHHhCCccceeeeccCceeeecCc
Q 026407           69 YRRNVGICLI-NSSKKKIFAATRIH----IPYTWQMPQGGADEG-EDLINAALRELREETGVTSAEFLAETPYWLTYDFP  142 (239)
Q Consensus        69 ~~~~v~v~i~-~~~~~~vLl~~r~~----~~~~w~~PgG~ve~g-Es~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~  142 (239)
                      .+.+++++.+ +.++..+|+++|..    +.|.|+||||++|++ |++++||+||++||||++...+.........+.. 
T Consensus        29 ~~~aavvl~l~~~~~~~vLl~~R~~~~r~~~G~~~~PGG~~e~~de~~~~tA~REl~EEtGl~~~~~~~lg~l~~~~~~-  107 (190)
T PRK10707         29 QRQAAVLIPIVRRPQPTLLLTQRSIHLRKHAGQVAFPGGAVDPTDASLIATALREAQEEVAIPPSAVEVIGVLPPVDSS-  107 (190)
T ss_pred             CCCeEEEEEEEECCCCEEEEEEeCCcccCCCCcEEcCCcccCCCcccHHHHHHHHHHHHHCCCccceEEEEEeeeeecc-
Confidence            4455555544 33334888888652    248999999999985 6899999999999999998555332222111111 


Q ss_pred             hhhhhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh
Q 026407          143 LKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV  203 (239)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~  203 (239)
                                     .+.....+++.+.... ..     ..+.+|+.++.|++++++.+..
T Consensus       108 ---------------~~~~~~~~v~~~~~~~-~~-----~~d~~Ev~~v~~vpl~e~~~~~  147 (190)
T PRK10707        108 ---------------TGYQVTPVVGIIPPDL-PY-----RANEDEVAAVFEMPLAEALHLG  147 (190)
T ss_pred             ---------------CCcEEEEEEEEECCCC-CC-----CCChhhhheEEEEeHHHHhCcc
Confidence                           1223333444333221 11     1234589999999999998764

>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.54  E-value=4.8e-14  Score=107.57  Aligned_cols=56  Identities=32%  Similarity=0.470  Sum_probs=43.9

Q ss_pred             eEEEEEEe--CCCCEEEEEEec------CCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccc
Q 026407           72 NVGICLIN--SSKKKIFAATRI------HIPYTWQMPQGGADEGEDLINAALRELREETGVTSA  127 (239)
Q Consensus        72 ~v~v~i~~--~~~~~vLl~~r~------~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~  127 (239)
                      ++++++++  .+..+|||++|.      ...+.|++|||+++.||++++||+||++||||+++.
T Consensus         2 ~~g~v~~~~~~~~~~vlL~~~~~~~~~~~~~~~W~lPgG~ie~~E~~~~aA~REl~EEtGl~~~   65 (126)
T cd04662           2 SAGILLYRFRDGRIEVLLVHPGGPFWANKDLGAWSIPKGEYTEGEDPLLAAKREFSEETGFCVD   65 (126)
T ss_pred             eEEEEEEEEcCCcEEEEEEEccCccccCCCCCEEECCcccCCCCcCHHHHHHHHHHHHhCCcce
Confidence            34555553  333368888752      223899999999999999999999999999999863

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>PRK08999 hypothetical protein; Provisional

Probab=99.48  E-value=4.3e-13  Score=117.93  Aligned_cols=119  Identities=21%  Similarity=0.277  Sum_probs=73.8

Q ss_pred             eeeEEEEEEeCCCCEEEEEEecCC---CCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhh
Q 026407           70 RRNVGICLINSSKKKIFAATRIHI---PYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVK  146 (239)
Q Consensus        70 ~~~v~v~i~~~~~~~vLl~~r~~~---~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~  146 (239)
                      +..+.+++++.++ ++||++|...   +|+|+||||+++.||++.+|+.||++||||+.+......  ....+.+++   
T Consensus         5 ~~~~~~vi~~~~~-~vLL~kR~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~l--~~~~h~~~~---   78 (312)
T PRK08999          5 IHVAAGVIRDADG-RILLARRPEGKHQGGLWEFPGGKVEPGETVEQALARELQEELGIEVTAARPL--ITVRHDYPD---   78 (312)
T ss_pred             eEEEEEEEECCCC-eEEEEEecCCCCCCCeEECCccCCCCCCCHHHHHHHHHHHHhCCceecceeE--EEEEEEcCC---
Confidence            3445555666666 8999998654   389999999999999999999999999999986432111  112233322   


Q ss_pred             hhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhcchHH-HHHHHh
Q 026407          147 QKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRKPCG-LIFRYF  214 (239)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~-~~~~~l  214 (239)
                                   ......++.+......       ....|..+++|++++++.++...+.. ++++.+
T Consensus        79 -------------~~~~i~~y~~~~~~~~-------~~~~e~~~~~Wv~~~el~~~~~~~~~~~i~~~l  127 (312)
T PRK08999         79 -------------KRVRLDVRRVTAWQGE-------PHGREGQPLAWVAPDELAVYPFPPANQPIVRAL  127 (312)
T ss_pred             -------------CeEEEEEEEEEEecCc-------ccCccCCccEEecHHHcccCCCCcchHHHHHHh
Confidence                         1122222222211111       11236678899999999986533333 444443

>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.47  E-value=4.9e-13  Score=101.41  Aligned_cols=55  Identities=25%  Similarity=0.419  Sum_probs=45.2

Q ss_pred             eEEEEEEeCCCCEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceee
Q 026407           72 NVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFL  130 (239)
Q Consensus        72 ~v~v~i~~~~~~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~  130 (239)
                      .|.+++++. + ++||+++..  +.|++|||+++.||++++||+||++||||+.+..+.
T Consensus         2 ~v~vi~~~~-~-~vLl~~~~~--~~w~lPgG~ve~gE~~~~aa~REl~EE~G~~~~~~~   56 (118)
T cd04665           2 SVLVICFYD-D-GLLLVRHKD--RGWEFPGGHVEPGETIEEAARREVWEETGAELGSLT   56 (118)
T ss_pred             EEEEEEEEC-C-EEEEEEeCC--CEEECCccccCCCCCHHHHHHHHHHHHHCCccCceE
Confidence            345555554 4 888888864  789999999999999999999999999999985443

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>PLN02709 nudix hydrolase

Probab=99.47  E-value=6.8e-13  Score=110.34  Aligned_cols=108  Identities=24%  Similarity=0.262  Sum_probs=72.0

Q ss_pred             eEEEEEEeC-----CCCEEEEEEecC----CCCcEEcCceecCCCC-CHHHHHHHHHHHHhCCccc--eeeeccCceeee
Q 026407           72 NVGICLINS-----SKKKIFAATRIH----IPYTWQMPQGGADEGE-DLINAALRELREETGVTSA--EFLAETPYWLTY  139 (239)
Q Consensus        72 ~v~v~i~~~-----~~~~vLl~~r~~----~~~~w~~PgG~ve~gE-s~~~aa~REl~EEtGl~~~--~~~~~~~~~~~~  139 (239)
                      +|.+.++..     ++.++||++|..    ++|.|.||||++|++| ++.+||+||++||+||+..  .+++....+.+ 
T Consensus        35 AVLv~l~~~~~~~~~~~~vLl~~Rs~~l~~h~GqiafPGG~~e~~D~~~~~tAlRE~~EEiGl~~~~v~vlg~L~~~~t-  113 (222)
T PLN02709         35 AVLVCLYQEQREDKNELRVILTKRSSTLSSHPGEVALPGGKRDEEDKDDIATALREAREEIGLDPSLVTIISVLEPFVN-  113 (222)
T ss_pred             EEEEEEeeccCCCCCceEEEEEEcCCCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHHHCCCchheEEeeecCCeEC-
Confidence            444555542     234899999865    4599999999999975 8999999999999999873  44444432211 


Q ss_pred             cCchhhhhhcccccCCcccCceeEEEEEEEccc-cceecccCCCCCCCccceeEEeCHhHHHHh
Q 026407          140 DFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGK-EEEINLLGDGSEKPEFNEWRWMFPEQVLER  202 (239)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~  202 (239)
                                       ..+..++-|+..+... ......     ..+|+.++.|++++.+.+.
T Consensus       114 -----------------~sg~~V~P~V~~~~~~~~~~~~~-----np~EV~~vf~vPL~~ll~~  155 (222)
T PLN02709        114 -----------------KKGMSVAPVIGFLHDKKAFKPLP-----NPAEVEEIFDVPLEMFLKD  155 (222)
T ss_pred             -----------------CCCCEEEEEEEEecCCCCccccC-----ChhhhheeEEecHHHHhCC
Confidence                             0133455555555421 111122     2359999999999999864

>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD

Probab=99.46  E-value=2.1e-12  Score=102.26  Aligned_cols=58  Identities=24%  Similarity=0.274  Sum_probs=46.1

Q ss_pred             eeEEEEEEeCCCCEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeec
Q 026407           71 RNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAE  132 (239)
Q Consensus        71 ~~v~v~i~~~~~~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~  132 (239)
                      ..|.++++.. + ++||.++..  ..|++|||++|+|||+++||.||++||||+.+..+...
T Consensus        25 ~~V~ii~~~~-~-~~LL~~~~~--~~~elPgG~vE~gEt~~eaA~REl~EETG~~~~~~~~l   82 (156)
T TIGR02705        25 NHVLVIPRYK-D-QWLLTEHKR--RGLEFPGGKVEPGETSKEAAIREVMEETGAIVKELHYI   82 (156)
T ss_pred             CEEEEEEEEC-C-EEEEEEEcC--CcEECCceecCCCCCHHHHHHHHHHHHhCcEeeeeEEE
Confidence            3555555554 4 788877765  56999999999999999999999999999988655433

The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.

>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.44  E-value=1.6e-12  Score=99.44  Aligned_cols=52  Identities=29%  Similarity=0.383  Sum_probs=40.7

Q ss_pred             EEEEEEeCCC-CEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCcc
Q 026407           73 VGICLINSSK-KKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTS  126 (239)
Q Consensus        73 v~v~i~~~~~-~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~  126 (239)
                      |.+++.+.++ .+||+.+...  +.|++|||++++||++++||+||++||||+++
T Consensus         3 ~~~~~~~~~~~~~ll~~r~~~--~~~~lPgG~ve~~E~~~~aa~Rel~EEtGl~~   55 (126)
T cd04663           3 CPAVLRRNGEVLELLVFEHPL--AGFQIVKGTVEPGETPEAAALRELQEESGLPS   55 (126)
T ss_pred             EEEEEEeCCceEEEEEEEcCC--CcEECCCccCCCCCCHHHHHHHHHHHHHCCee
Confidence            4444444433 3666665554  56999999999999999999999999999986

Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are

>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.44  E-value=2.2e-12  Score=97.78  Aligned_cols=54  Identities=30%  Similarity=0.238  Sum_probs=40.7

Q ss_pred             eEEEEEEeCCCCEEEEEEecCC--CCcEEcCceecCCCCCHHHHHHHHHHHHhCCccc
Q 026407           72 NVGICLINSSKKKIFAATRIHI--PYTWQMPQGGADEGEDLINAALRELREETGVTSA  127 (239)
Q Consensus        72 ~v~v~i~~~~~~~vLl~~r~~~--~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~  127 (239)
                      .+++++...++  +||.+|...  .|.|+||||++|.||++++||.||+.||||+++.
T Consensus         6 ~av~vl~~~~~--~lL~~r~~~~~~~~w~lPgG~ve~~E~~~~aa~REl~EE~g~~~~   61 (118)
T cd04674           6 VVVALLPVDDG--LLVIRRGIEPGRGKLALPGGFIELGETWQDAVARELLEETGVAVD   61 (118)
T ss_pred             EEEEEEEECCC--EEEEEeecCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCccc
Confidence            34444444443  444455432  3899999999999999999999999999999874

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PLN02552 isopentenyl-diphosphate delta-isomerase

Probab=99.36  E-value=9.4e-12  Score=105.52  Aligned_cols=61  Identities=25%  Similarity=0.357  Sum_probs=47.5

Q ss_pred             CCCceeeEEEEEEeCCCCEEEEEEecCC----CCcEEcC-ceecCCCC-----------------CHHHHHHHHHHHHhC
Q 026407           66 PDGYRRNVGICLINSSKKKIFAATRIHI----PYTWQMP-QGGADEGE-----------------DLINAALRELREETG  123 (239)
Q Consensus        66 ~~~~~~~v~v~i~~~~~~~vLl~~r~~~----~~~w~~P-gG~ve~gE-----------------s~~~aa~REl~EEtG  123 (239)
                      ...+++++.++|+|.++ ++||+||...    ||.|... +|++..||                 +..+||+||+.||||
T Consensus        52 ~gl~Hra~~v~i~n~~g-~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~eAA~REL~EElG  130 (247)
T PLN02552         52 RGLLHRAFSVFLFNSKY-ELLLQQRAATKVTFPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNAAQRKLLHELG  130 (247)
T ss_pred             CCceEEEEEEEEEcCCC-eEEEEEecCCCCCCCcceecccCCccccccccccccccccccccchhhHHHHHHhHHHHHhC
Confidence            34588899999999988 9999999754    4899665 45444432                 168999999999999


Q ss_pred             Cccc
Q 026407          124 VTSA  127 (239)
Q Consensus       124 l~~~  127 (239)
                      |+..
T Consensus       131 I~~~  134 (247)
T PLN02552        131 IPAE  134 (247)
T ss_pred             CCcc
Confidence            9863

>PLN03143 nudix hydrolase; Provisional

Probab=99.36  E-value=1.4e-11  Score=106.57  Aligned_cols=121  Identities=17%  Similarity=0.298  Sum_probs=71.6

Q ss_pred             eEEEEEE-eCCCC-EEEEEEecCCC---CcEEcCceecCC-CCCHHHHHHHHHHHHhCCcc--ceeeeccCce------e
Q 026407           72 NVGICLI-NSSKK-KIFAATRIHIP---YTWQMPQGGADE-GEDLINAALRELREETGVTS--AEFLAETPYW------L  137 (239)
Q Consensus        72 ~v~v~i~-~~~~~-~vLl~~r~~~~---~~w~~PgG~ve~-gEs~~~aa~REl~EEtGl~~--~~~~~~~~~~------~  137 (239)
                      +|+|+++ +.++. +++|+++...+   ..|+||||.+|+ ||++++||+||++||||+.+  ..+.......      .
T Consensus       130 aVaVL~~l~~~ge~~VlLVrQ~R~pvg~~~lE~PAG~lD~~~edp~~aA~REL~EETG~~~~a~~lv~L~~~~~~~~g~~  209 (291)
T PLN03143        130 AVAVLILLESEGETYAVLTEQVRVPVGKFVLELPAGMLDDDKGDFVGTAVREVEEETGIKLKLEDMVDLTAFLDPSTGCR  209 (291)
T ss_pred             eEEEEEEEeCCCCEEEEEEEeEecCCCcEEEEecccccCCCCCCHHHHHHHHHHHHHCCccccceEEEeeeccccCcCce
Confidence            5555544 54442 48887776543   679999999997 48999999999999999975  3444332110      1


Q ss_pred             eecCchhhhhhcccccCCcccCceeEEEEEEEccccceec---cc-CCCCCCCccceeEEeCHhHHHHhhcc
Q 026407          138 TYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEIN---LL-GDGSEKPEFNEWRWMFPEQVLERVRK  205 (239)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~E~~~~~Wv~~eel~~~~~~  205 (239)
                      .+..+             .+..+..+.|++........+.   .. ....++.|..++.|++++++.++..+
T Consensus       210 v~psp-------------G~~dE~i~Lfla~~~v~~~~l~~l~~~~~~l~degE~Iev~~vpl~eiw~~~aD  268 (291)
T PLN03143        210 MFPSP-------------GGCDEEISLFLYRGHVDKETIRQLQGKETGLRDHGELIKVHVVPYRELWRMTAD  268 (291)
T ss_pred             EEecC-------------CccCCeEEEEEEccccchhhhcccccccCCCCCCCcEEEEEEEEHHHHHHHHHh
Confidence            11111             1222334444433332211110   00 11234567789999999999988743

>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]

Probab=99.34  E-value=4.2e-11  Score=96.00  Aligned_cols=116  Identities=25%  Similarity=0.304  Sum_probs=81.0

Q ss_pred             eeEEEE-EEeCCCC-EEEEEEecCCC---CcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccC-ceeeecCchh
Q 026407           71 RNVGIC-LINSSKK-KIFAATRIHIP---YTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETP-YWLTYDFPLK  144 (239)
Q Consensus        71 ~~v~v~-i~~~~~~-~vLl~~r~~~~---~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~-~~~~~~~~~~  144 (239)
                      ..|+++ ++..+|. .++|++....|   -..++|+|.++.||+++.||+|||+||||+. ..+....+ -+...++   
T Consensus        74 dgVaIl~il~~dG~~~ivL~kQfRpP~Gk~ciElPAGLiD~ge~~~~aAiREl~EEtGy~-gkv~~~s~~~f~DPGl---  149 (225)
T KOG3041|consen   74 DGVAILAILESDGKPYIVLVKQFRPPTGKICIELPAGLIDDGEDFEGAAIRELEEETGYK-GKVDMVSPTVFLDPGL---  149 (225)
T ss_pred             CeEEEEEEEecCCcEEEEEEEeecCCCCcEEEEcccccccCCCchHHHHHHHHHHHhCcc-ceeeeccccEEcCCCC---
Confidence            455554 4444553 67777765544   3579999999999999999999999999998 44432222 2333333   


Q ss_pred             hhhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh
Q 026407          145 VKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV  203 (239)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~  203 (239)
                                   .+-..+..++.+.+...+-...-...++.|+.++.-++..+|.+..
T Consensus       150 -------------tn~~~~iv~v~idg~~pEnqrp~q~ledgEfIev~~i~~~~L~~~~  195 (225)
T KOG3041|consen  150 -------------TNCNLCIVVVDIDGDVPENQRPVQQLEDGEFIEVFLIPLSELWREL  195 (225)
T ss_pred             -------------CCCceEEEEEEecCCCccccCccccCCCCceEEEEEeeHHHHHHHH
Confidence                         3345667778887765543333345778899999999999998865

>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]

Probab=99.32  E-value=1.9e-11  Score=93.76  Aligned_cols=56  Identities=32%  Similarity=0.493  Sum_probs=44.3

Q ss_pred             eEEEEEEeCCCCEEEEEEecCCCCcEEcCceecCCCCCHHH-HHHHHHHHHhCCccc
Q 026407           72 NVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLIN-AALRELREETGVTSA  127 (239)
Q Consensus        72 ~v~v~i~~~~~~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~-aa~REl~EEtGl~~~  127 (239)
                      .+.+++......++|+.+|....+.|.||||++|.||++.+ ||+||++||||++..
T Consensus        13 ~~~~~~~~~~~~~vl~~~~~~~~~~~~~PgG~ve~~e~~~~~aa~RE~~EEtGl~~~   69 (161)
T COG0494          13 AVAVLVGRDGPGEVLLAQRRDDGGLWELPGGKVEPGEELPEEAAARELEEETGLRVK   69 (161)
T ss_pred             eEEEEEecCCCCEEeEEEccccCCceecCCcccCCCCchHHHHHHHHHHHHhCCeee
Confidence            34444443331489998888754699999999999998888 999999999999875

>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P

Probab=99.31  E-value=2.2e-11  Score=99.04  Aligned_cols=42  Identities=29%  Similarity=0.415  Sum_probs=37.6

Q ss_pred             EEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCcc
Q 026407           84 KIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTS  126 (239)
Q Consensus        84 ~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~  126 (239)
                      ++|+++|.. .|.|.||||++++||++.+||.||+.||||+..
T Consensus        50 ~vLl~~r~~-~g~walPGG~v~~~E~~~~aa~Rel~EEt~l~l   91 (186)
T cd03670          50 QFVAIKRPD-SGEWAIPGGMVDPGEKISATLKREFGEEALNSL   91 (186)
T ss_pred             EEEEEEeCC-CCcCcCCeeeccCCCCHHHHHHHHHHHHHcccc
Confidence            778888865 489999999999999999999999999997653

Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.

>PLN02791 Nudix hydrolase homolog

Probab=99.30  E-value=3.7e-11  Score=115.61  Aligned_cols=121  Identities=19%  Similarity=0.299  Sum_probs=77.9

Q ss_pred             CCceeeEEEEEEeCCCCEEEEEEecC----CCCcEEc-CceecCCCCCHHHHHHHHHHHHhCCccc--eeeeccCceeee
Q 026407           67 DGYRRNVGICLINSSKKKIFAATRIH----IPYTWQM-PQGGADEGEDLINAALRELREETGVTSA--EFLAETPYWLTY  139 (239)
Q Consensus        67 ~~~~~~v~v~i~~~~~~~vLl~~r~~----~~~~w~~-PgG~ve~gEs~~~aa~REl~EEtGl~~~--~~~~~~~~~~~~  139 (239)
                      ..+|.++.+++++.++.++||+||..    .||.|.+ ||||++.||+..+||+||++||+||++.  .+....  ...+
T Consensus        29 Gl~HrAvhVwIfn~~~gelLLQkRS~~K~~~PG~WDiS~gGHv~aGEs~~eAA~REL~EELGI~l~~~~l~~l~--~~~~  106 (770)
T PLN02791         29 GDYHRAVHVWIYSESTQELLLQRRADCKDSWPGQWDISSAGHISAGDTSLLSAQRELEEELGIILPKDAFELLF--VFLQ  106 (770)
T ss_pred             CCceEEEEEEEEECCCCeEEEEEecCCCCCCCCcccCcCCCCCCCCCCHHHHHHHHHHHHhCCCCChhheeeee--eEEE
Confidence            44888999999997433999999975    3599999 7999999999999999999999999852  111111  1111


Q ss_pred             cCchhhhhhcccccCCccc-CceeEEEEEEEcccc--ceecccCCCCCCCccceeEEeCHhHHHHhh
Q 026407          140 DFPLKVKQKLNRRWGTNYK-GQAQKWFLFKFTGKE--EEINLLGDGSEKPEFNEWRWMFPEQVLERV  203 (239)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~  203 (239)
                      ...         ...+.+. ....+.|++......  ..+.+     ..+|+.+++|++++|+.+++
T Consensus       107 ~~~---------~~~g~~~e~E~~~VYlv~~~~~~p~~~~~l-----q~eEV~~v~wvsl~El~~~l  159 (770)
T PLN02791        107 ECV---------INDGKFINNEYNDVYLVTTLDPIPLEAFTL-----QESEVSAVKYMSIEEYKSAL  159 (770)
T ss_pred             Eee---------ccCCCcceeeEEEEEEEEECCCCCcccCCC-----ChhhhheeEEEcHHHHHHHH
Confidence            100         0001111 122334443322211  11222     34599999999999999876

>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone

Probab=99.05  E-value=5.8e-09  Score=77.95  Aligned_cols=50  Identities=18%  Similarity=0.296  Sum_probs=40.9

Q ss_pred             EEEEEeCCCCEEEEEEecCCC---CcEEcCceecCCCCCHHHHHHHHHHHHhCC
Q 026407           74 GICLINSSKKKIFAATRIHIP---YTWQMPQGGADEGEDLINAALRELREETGV  124 (239)
Q Consensus        74 ~v~i~~~~~~~vLl~~r~~~~---~~w~~PgG~ve~gEs~~~aa~REl~EEtGl  124 (239)
                      .++++..++ ++||.||...+   |+|+||+|.++.+|+.+++..||+.||.++
T Consensus         6 ~~~ii~~~~-~~ll~kR~~~gl~~glwefP~~~~~~~~~~~~~~~~~~~~~~~~   58 (118)
T cd03431           6 AVVVIRNDG-RVLLEKRPEKGLLAGLWEFPSVEWEEEADGEEALLSALKKALRL   58 (118)
T ss_pred             EEEEEecCC-eEEEEECCCCCCCCcceeCCCccccCCcCHHHHHHHHHHHHhCc
Confidence            334444455 89999997654   999999999999999999999999998764

It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to

>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]

Probab=99.00  E-value=3.1e-09  Score=87.75  Aligned_cols=56  Identities=27%  Similarity=0.316  Sum_probs=44.2

Q ss_pred             eEEEEEEeC--CCCEEEEEEecC----CCCcEEcCceecCCCC-CHHHHHHHHHHHHhCCccc
Q 026407           72 NVGICLINS--SKKKIFAATRIH----IPYTWQMPQGGADEGE-DLINAALRELREETGVTSA  127 (239)
Q Consensus        72 ~v~v~i~~~--~~~~vLl~~r~~----~~~~w~~PgG~ve~gE-s~~~aa~REl~EEtGl~~~  127 (239)
                      +|.+.+++.  ++..|||+||..    +.|...||||+.|+.+ +.++||.||..||+|++..
T Consensus        45 aVlI~L~~~~~~~l~vLltkRSr~LrshsGev~fPGG~~d~~D~s~~~tAlREt~EEIGl~~~  107 (246)
T KOG3069|consen   45 AVLIPLVQVGSGELSVLLTKRSRTLRSHSGEVCFPGGRRDPHDKSDIQTALRETEEEIGLDPE  107 (246)
T ss_pred             cEEEEEEEcCCCceEEEEEeccccccccCCceeCCCCcCCccccchHHHHHHHHHHHhCCCHH
Confidence            455555555  224789999864    3599999999999865 8889999999999999973

>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]

Probab=98.86  E-value=2.9e-09  Score=91.25  Aligned_cols=115  Identities=23%  Similarity=0.392  Sum_probs=79.4

Q ss_pred             CceeeEEEEEEeCCCCEEEEEEecCC----CCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCch
Q 026407           68 GYRRNVGICLINSSKKKIFAATRIHI----PYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPL  143 (239)
Q Consensus        68 ~~~~~v~v~i~~~~~~~vLl~~r~~~----~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~  143 (239)
                      ..+..++..++|..+ +||+++-...    .|.|.+|+|.++++|++-++|+||++||||++..... ...+--.+.-  
T Consensus       113 sh~vgvg~~V~n~~~-eVlVv~e~d~~~~~~~~wK~ptG~v~~~e~i~~gavrEvkeetgid~ef~e-Vla~r~~H~~--  188 (295)
T KOG0648|consen  113 SHRVGVGAFVLNKKK-EVLVVQEKDGAVKIRGGWKLPTGRVEEGEDIWHGAVREVKEETGIDTEFVE-VLAFRRAHNA--  188 (295)
T ss_pred             hhheeeeeeEecCCc-eeEEEEecccceeecccccccceEecccccchhhhhhhhHHHhCcchhhhh-HHHHHhhhcc--
Confidence            356688889999985 9999765322    3999999999999999999999999999999753211 1111001110  


Q ss_pred             hhhhhcccccCCcc-cCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh
Q 026407          144 KVKQKLNRRWGTNY-KGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV  203 (239)
Q Consensus       144 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~  203 (239)
                                  .+ ......++++.+.....++..     ...|+.++.|++.++.....
T Consensus       189 ------------~~~~~ksd~f~~c~L~p~s~~i~~-----~~~ei~~~~Wmp~~e~v~qp  232 (295)
T KOG0648|consen  189 ------------TFGLIKSDMFFTCELRPRSLDITK-----CKREIEAAAWMPIEEYVSQP  232 (295)
T ss_pred             ------------hhhcccccceeEEEeeccccccch-----hHHHHHHHhcccHHHhhccc
Confidence                        11 123466788888665444443     34488888999999887655

>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]

Probab=98.85  E-value=3.5e-08  Score=74.00  Aligned_cols=124  Identities=18%  Similarity=0.239  Sum_probs=71.1

Q ss_pred             eeEEEEEEeCCCC--EEEEEEecC------CCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccc-eeeeccCceeeecC
Q 026407           71 RNVGICLINSSKK--KIFAATRIH------IPYTWQMPQGGADEGEDLINAALRELREETGVTSA-EFLAETPYWLTYDF  141 (239)
Q Consensus        71 ~~v~v~i~~~~~~--~vLl~~r~~------~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~  141 (239)
                      ..++++++.....  .|||+.-..      ..|-|.+|.|.+..||++..||+||.-||+||.+. .......    +..
T Consensus         4 ~SAGvLlYR~~aG~v~VLLvHPGGPFWa~kD~GAWSIPKGey~~gEdp~~AArREf~EE~Gi~vdGP~~~lG~----~kQ   79 (161)
T COG4119           4 LSAGVLLYRARAGVVDVLLVHPGGPFWAGKDDGAWSIPKGEYTGGEDPWLAARREFSEEIGICVDGPRIDLGS----LKQ   79 (161)
T ss_pred             ccceeEEEEecCCCEEEEEecCCCCccccCCCCcccccccccCCCcCHHHHHHHHhhhhhceeecCchhhhhh----hcc
Confidence            4556666544322  344433211      12899999999999999999999999999999872 2211111    111


Q ss_pred             chhhhhhcccccCCcccCceeEEEEEEEccccce-------ec---ccCCCCCCCccceeEEeCHhHHHHhh---cchHH
Q 026407          142 PLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEE-------IN---LLGDGSEKPEFNEWRWMFPEQVLERV---RKPCG  208 (239)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~---~~~~~~~~~E~~~~~Wv~~eel~~~~---~~~~~  208 (239)
                      +               -|..+..|-.+.+.+..+       ..   -++....-+|++.+.|+++.+....+   .+++.
T Consensus        80 ~---------------GGKvVta~~veae~Dva~~rSntFe~eWPprSG~M~~FPEVDRagWF~l~eAr~Kil~gQRpfl  144 (161)
T COG4119          80 S---------------GGKVVTAFGVEAELDVADARSNTFELEWPPRSGKMRKFPEVDRAGWFPLAEARTKILKGQRPFL  144 (161)
T ss_pred             C---------------CCcEEEEEeeeeeeehhhhhcceeeeecCCCCCccccCcccccccceecHHHHhHHhhccchHH
Confidence            0               112233333332221111       11   11223345599999999999998755   66655


Q ss_pred             -HHHHH
Q 026407          209 -LIFRY  213 (239)
Q Consensus       209 -~~~~~  213 (239)
                       +++..
T Consensus       145 drL~a~  150 (161)
T COG4119         145 DRLMAH  150 (161)
T ss_pred             HHHHHH
Confidence             54443

>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]

Probab=98.82  E-value=1.2e-08  Score=80.66  Aligned_cols=118  Identities=19%  Similarity=0.249  Sum_probs=78.2

Q ss_pred             ceeeEEEEEEeCCCCEEEEEEecCC----CCcEEc-CceecCCCCCHHHHHHHHHHHHhCCccce--eeeccCceeeecC
Q 026407           69 YRRNVGICLINSSKKKIFAATRIHI----PYTWQM-PQGGADEGEDLINAALRELREETGVTSAE--FLAETPYWLTYDF  141 (239)
Q Consensus        69 ~~~~v~v~i~~~~~~~vLl~~r~~~----~~~w~~-PgG~ve~gEs~~~aa~REl~EEtGl~~~~--~~~~~~~~~~~~~  141 (239)
                      .+.+..++++|.+| ++||+||...    ++.|.- ..||--+||+..+|++|-+.+|+||.+..  .....+   .+.|
T Consensus        32 LHrAFS~~lFne~g-~LLltrRA~~K~twP~vWTNSvCsHP~~~es~~~A~~rRl~~ELGie~~~~d~~~il~---rf~Y  107 (185)
T COG1443          32 LHRAFSSFLFNERG-QLLLTRRALSKKTWPGVWTNSVCSHPLPGESNEDAARRRLAYELGIEPDQYDKLEILP---RFRY  107 (185)
T ss_pred             HHhhhheeEECCCC-ceeeehhhhhcccCcccccccccCCCcCCCchHHHHHHHHHHHhCCCCcccCcccccc---ceEE
Confidence            46788999999999 9999999753    377743 57888899999999999999999999852  222222   2222


Q ss_pred             chhhhhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhcc
Q 026407          142 PLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRK  205 (239)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~  205 (239)
                      ....         ..-.++....+++.+.... .++.+     .+|+.+++|++++++.+++..
T Consensus       108 rA~~---------~~~~~E~Eic~V~~~~~~~-~~~~n-----pdEV~~~~wv~~e~l~~~~~~  156 (185)
T COG1443         108 RAAD---------PDGIVENEICPVLAARLDS-ALDPN-----PDEVMDYRWVSPEDLKEMVDA  156 (185)
T ss_pred             eccC---------CCCcceeeeeeEEEEeecC-CCCCC-----hHHhhheeccCHHHHHHhhcC
Confidence            1100         0011222333344443332 22332     359999999999999998843

>PLN02839 nudix hydrolase

Probab=98.48  E-value=1.4e-06  Score=77.22  Aligned_cols=103  Identities=17%  Similarity=0.179  Sum_probs=67.8

Q ss_pred             CEEEEEEecCC----CCcE-EcCceecCCCCCHHHHHHHHHHHHhCCccc---eeeeccCceeeecCchhhhhhcccccC
Q 026407           83 KKIFAATRIHI----PYTW-QMPQGGADEGEDLINAALRELREETGVTSA---EFLAETPYWLTYDFPLKVKQKLNRRWG  154 (239)
Q Consensus        83 ~~vLl~~r~~~----~~~w-~~PgG~ve~gEs~~~aa~REl~EEtGl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (239)
                      .++.+.||...    ||+| .+.||++..||++.++++||.+||.||...   .+..  .+.++|.+.+..         
T Consensus       218 ~~lWV~RRS~tK~t~PGmLDn~VAGGi~aGesp~etliREa~EEAgLp~~l~~~~~~--~G~VsY~~~~~~---------  286 (372)
T PLN02839        218 KFLWIGKRSLSKSTYPGMLDHLVAGGLPHGISCGENLVKECEEEAGISKAIADRAIA--VGAVSYMDIDQY---------  286 (372)
T ss_pred             eEEEeeccCCCCCCCCChhhhccccCccCCCCHHHHHHHHHHHHcCCCHHHHhcceE--eEEEEEEEEcCC---------
Confidence            37888998643    4999 457999999999999999999999999853   2222  123333321110         


Q ss_pred             CcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh
Q 026407          155 TNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV  203 (239)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~  203 (239)
                       .  -+....|+|.+.-.. ++.+   ...+.|++++.+++++|+.+.+
T Consensus       287 -g--~~~evly~YDLeLP~-df~P---~~qDGEVe~F~Lm~v~EV~~~l  328 (372)
T PLN02839        287 -C--FKRDVLFCYDLELPQ-DFVP---KNQDGEVESFKLIPVAQVANVI  328 (372)
T ss_pred             -c--cccCEEEEeeeecCC-cccc---CCCccceeEEEEecHHHHHHHH
Confidence             1  122334455555322 1211   2346799999999999999876

>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A

Probab=98.26  E-value=3e-06  Score=63.39  Aligned_cols=100  Identities=16%  Similarity=0.186  Sum_probs=51.7

Q ss_pred             EEEEeCCCCEEEEEEecCCC---CcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhhhccc
Q 026407           75 ICLINSSKKKIFAATRIHIP---YTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQKLNR  151 (239)
Q Consensus        75 v~i~~~~~~~vLl~~r~~~~---~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (239)
                      +++++.++ ++||.||...+   |+|+||.-.++...+ .+.+.+.+.+..|+.+....  ....+.+.+++        
T Consensus         2 ~~i~~~~~-~~Ll~kRp~~gll~GLwefP~~e~~~~~~-~~~l~~~~~~~~~~~~~~~~--~~~~v~H~fSH--------   69 (114)
T PF14815_consen    2 LLIIRSQG-RVLLEKRPEKGLLAGLWEFPLIESDEEDD-EEELEEWLEEQLGLSIRSVE--PLGTVKHVFSH--------   69 (114)
T ss_dssp             EEEEETTS-EEEEEE--SSSTTTT-EE--EEE-SSS-C-HHHHHHHTCCSSS-EEEE-S---SEEEEEE-SS--------
T ss_pred             EEEEEeCC-EEEEEECCCCChhhcCcccCEeCccCCCC-HHHHHHHHHHHcCCChhhhe--ecCcEEEEccc--------
Confidence            46677777 99999999876   999999988874334 55555666677777653222  11233444433        


Q ss_pred             ccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh
Q 026407          152 RWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV  203 (239)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~  203 (239)
                              ...+..++.+.......         .+..+.+|++++++.++.
T Consensus        70 --------~~~~~~~~~~~~~~~~~---------~~~~~~~W~~~~~l~~~~  104 (114)
T PF14815_consen   70 --------RRWTIHVYEVEVSADPP---------AEPEEGQWVSLEELDQYP  104 (114)
T ss_dssp             --------EEEEEEEEEEEEE-SS-------------TTEEEEEGGGGGGS-
T ss_pred             --------eEEEEEEEEEEecCCCC---------CCCCCcEEEEHHHHhhCC
Confidence                    23333333333221100         034689999999999764

>PRK10880 adenine DNA glycosylase; Provisional

Probab=97.90  E-value=0.00012  Score=65.40  Aligned_cols=79  Identities=15%  Similarity=0.222  Sum_probs=45.9

Q ss_pred             CCCCCCCCCcCCCccccc--cccCCCCCCCC-ceeeEEEEEEeCCCCEEEEEEecCCC---CcEEcCceecCCCCCHHHH
Q 026407           40 RKPLCCSCDDSSSSLSSF--TALSTETPPDG-YRRNVGICLINSSKKKIFAATRIHIP---YTWQMPQGGADEGEDLINA  113 (239)
Q Consensus        40 ~~~~~c~~~~~~~a~~~~--~~~~~~~~~~~-~~~~v~v~i~~~~~~~vLl~~r~~~~---~~w~~PgG~ve~gEs~~~a  113 (239)
                      |+|..||+...|.+....  ...|....+.. ......++++..++ ++||.+|...+   |+|+||+.  +..+     
T Consensus       197 P~C~~Cpl~~~C~~~~~~~~~~~P~k~~k~~~~~~~~~~~~~~~~~-~~~l~~r~~~gl~~gl~~fP~~--~~~~-----  268 (350)
T PRK10880        197 PKCELCPLQNGCIAYANHSWALYPGKKPKQTLPERTGYFLLLQHGD-EVWLEQRPPSGLWGGLFCFPQF--ADEE-----  268 (350)
T ss_pred             CCCCCCccHhhhHHHHcCCHhhCCCCCCCCCCCeEEEEEEEEEECC-EEEEEECCccChhhccccCCCC--cchh-----
Confidence            344449999988875532  22333333222 22233334444445 89999998765   99999963  2111     


Q ss_pred             HHHHHHHHhCCcc
Q 026407          114 ALRELREETGVTS  126 (239)
Q Consensus       114 a~REl~EEtGl~~  126 (239)
                      ..++..|+.|+..
T Consensus       269 ~~~~~~~~~~~~~  281 (350)
T PRK10880        269 ELRQWLAQRGIAA  281 (350)
T ss_pred             hHHHHHHhcCCch
Confidence            2455667888753

>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]

Probab=97.81  E-value=4.7e-06  Score=72.22  Aligned_cols=107  Identities=21%  Similarity=0.378  Sum_probs=75.1

Q ss_pred             eEEEEEEeCCCCEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhhhccc
Q 026407           72 NVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQKLNR  151 (239)
Q Consensus        72 ~v~v~i~~~~~~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (239)
                      ..+.+++|....++||++.... ..|.||.|++..+|+..+||.||+.||||.+....+..-.      +-..       
T Consensus        84 v~ga~ild~~~sr~llv~g~qa-~sw~fprgK~~kdesd~~caiReV~eetgfD~skql~~~e------~Ie~-------  149 (348)
T KOG2937|consen   84 VRGAIILDEKRSRCLLVKGWQA-SSWSFPRGKISKDESDSDCAIREVTEETGFDYSKQLQDNE------GIET-------  149 (348)
T ss_pred             CchHhhhhhhhhhhheeeceec-ccccccCccccccchhhhcchhcccchhhcCHHHHhcccc------Cccc-------
Confidence            4456788887778898887654 4599999999999999999999999999999854322111      1110       


Q ss_pred             ccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHH
Q 026407          152 RWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVL  200 (239)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~  200 (239)
                          .+.+  +.+.+|...+...++++.+  ....|++...|..++++.
T Consensus       150 ----nI~d--q~~~~fIi~gvs~d~~f~~--~v~~eis~ihW~~l~~l~  190 (348)
T KOG2937|consen  150 ----NIRD--QLVRLFIINGVSEDTNFNP--RVRKEISKIHWHYLDHLV  190 (348)
T ss_pred             ----chhh--ceeeeeeeccceeeeecch--hhhccccceeeeehhhhc
Confidence                1122  3344555666555555533  345688999999999994

>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.77  E-value=4.2e-05  Score=62.02  Aligned_cols=121  Identities=21%  Similarity=0.338  Sum_probs=73.2

Q ss_pred             CceeeEEEEEEeCCCCEEEEEEecCCC----CcEEc-----C---ceecCC--CCCHHHHHHHHHHHHhCCccceeee-c
Q 026407           68 GYRRNVGICLINSSKKKIFAATRIHIP----YTWQM-----P---QGGADE--GEDLINAALRELREETGVTSAEFLA-E  132 (239)
Q Consensus        68 ~~~~~v~v~i~~~~~~~vLl~~r~~~~----~~w~~-----P---gG~ve~--gEs~~~aa~REl~EEtGl~~~~~~~-~  132 (239)
                      ..+++..|++++.++ ++||++|+...    +.|.-     |   .|..+.  +.....||.|-|.-|+||....+.. .
T Consensus        50 lLHRaFSVFlFns~~-~lLlQqRS~~KitFP~~~TNtccSHPL~~~~el~~~d~lGVr~AAqRkL~~ELGIp~e~v~pee  128 (225)
T KOG0142|consen   50 LLHRAFSVFLFNSKN-ELLLQQRSDEKITFPGLWTNTCCSHPLYNPGELEENDALGVRRAAQRKLKAELGIPLEEVPPEE  128 (225)
T ss_pred             hhhheeeEEEecCcc-hHHHhhhccccccccchhhhhhhcCcCCChhhhccCchHHHHHHHHHHHHHhhCCCccccCHHH
Confidence            467788999999988 99999998642    44421     1   122222  2367889999999999998754421 1


Q ss_pred             cCceeeecCchhhhhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhc
Q 026407          133 TPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVR  204 (239)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~  204 (239)
                      ..+.-.+.|....    ...|     |+....|++.+...   +.+++   ..+|+.+++|++.+|+.+++.
T Consensus       129 ~~~ltrihYkA~s----dg~w-----GEhEiDYiL~~~~~---~~~nP---npnEv~e~ryvs~eelkel~~  185 (225)
T KOG0142|consen  129 FNFLTRIHYKAPS----DGIW-----GEHEIDYILFLVKD---VTLNP---NPNEVSEIRYVSREELKELVA  185 (225)
T ss_pred             cccceeeeeecCC----CCCc-----ccceeeEEEEEecc---CCCCC---ChhhhhHhheecHHHHHHHHh
Confidence            1111122222211    1223     34444444444442   23322   234999999999999999883

>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]

Probab=97.64  E-value=0.00033  Score=60.11  Aligned_cols=121  Identities=22%  Similarity=0.198  Sum_probs=80.0

Q ss_pred             CceeeEEEEEEeCCCCEEEEEEecCC---------------------------C---CcEEcCceecCCCCCHHHHHHHH
Q 026407           68 GYRRNVGICLINSSKKKIFAATRIHI---------------------------P---YTWQMPQGGADEGEDLINAALRE  117 (239)
Q Consensus        68 ~~~~~v~v~i~~~~~~~vLl~~r~~~---------------------------~---~~w~~PgG~ve~gEs~~~aa~RE  117 (239)
                      ..+..|+++++|..+++++|++....                           |   -..++.+|.|+..-+..+-|.||
T Consensus       227 k~hdSvt~iL~n~srk~LVlvqqfRpaVy~G~~~~~~~g~~~~vDe~~~~e~~PaigvTlELcag~Vd~p~s~~e~a~~e  306 (405)
T KOG4432|consen  227 KCHDSVTCILVNMSRKELVLVQQFRPAVYVGKNRFLKEGIGKPVDEIDFSESDPAIGVTLELCAGRVDDPFSDPEKAARE  306 (405)
T ss_pred             hCCCceEEEEEeccchheehhhhcCcceeecceeecccCCCCcccccccccCCccceeeeeeecccCCCCcccHHHHHHH
Confidence            35668899999887656555442110                           0   12567789999888999999999


Q ss_pred             HHHHhCCcc--ceeeeccCceeeecCchhhhhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeC
Q 026407          118 LREETGVTS--AEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMF  195 (239)
Q Consensus       118 l~EEtGl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~  195 (239)
                      ..||+|++.  ..+......+..                -+..|..+++|.+.++... .-...+...+++|..++--++
T Consensus       307 ~veecGYdlp~~~~k~va~y~sG----------------VG~SG~~QTmfy~eVTdA~-rsgpGgg~~ee~E~IEvv~ls  369 (405)
T KOG4432|consen  307 SVEECGYDLPEDSFKLVAKYISG----------------VGQSGDTQTMFYVEVTDAR-RSGPGGGEKEEDEDIEVVRLS  369 (405)
T ss_pred             HHHHhCCCCCHHHHhhhheeecc----------------cCCcCCeeEEEEEEeehhh-ccCCCCCcccccceeeEEEec
Confidence            999999987  222222211111                1335677888888887532 111222345666888999999


Q ss_pred             HhHHHHhhcc
Q 026407          196 PEQVLERVRK  205 (239)
Q Consensus       196 ~eel~~~~~~  205 (239)
                      ++++..+..+
T Consensus       370 le~a~~~~~q  379 (405)
T KOG4432|consen  370 LEDAPSLYRQ  379 (405)
T ss_pred             hhhhhHHHhc
Confidence            9999998743

>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]

Probab=97.51  E-value=0.0014  Score=51.47  Aligned_cols=114  Identities=19%  Similarity=0.299  Sum_probs=63.6

Q ss_pred             ceeeEEEEEEeCCCCEEEEEEecCCC------CcEEc-CceecCCCC---CHHHH----HHHHHHHHhCCccceeeeccC
Q 026407           69 YRRNVGICLINSSKKKIFAATRIHIP------YTWQM-PQGGADEGE---DLINA----ALRELREETGVTSAEFLAETP  134 (239)
Q Consensus        69 ~~~~v~v~i~~~~~~~vLl~~r~~~~------~~w~~-PgG~ve~gE---s~~~a----a~REl~EEtGl~~~~~~~~~~  134 (239)
                      ++.....+++-..+ +||+..|..++      +++++ -|||+..++   +..+.    +.||+.||.++...+.... .
T Consensus        59 ~KQ~IpYvvi~~ed-evliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~s~~evLk~n~~REleEEv~vseqd~q~~-e  136 (203)
T COG4112          59 TKQVIPYVVIMDED-EVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGATSREEVLKGNLERELEEEVDVSEQDLQEL-E  136 (203)
T ss_pred             ccccccEEEEecCC-EEEEEEeccCcchhhhccccccccccccccCCCcccHHHHHccchHHHHHHHhCcCHHHhhhh-e
Confidence            34444334443334 89998886543      67777 599998765   33433    6699999999985222110 0


Q ss_pred             ceeeecCchhhhhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHH
Q 026407          135 YWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLE  201 (239)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~  201 (239)
                         ..++-+..         ..-.|....-.++...+...++..     .+.+..+++|+..++|..
T Consensus       137 ---~lGlINdd---------~neVgkVHiG~lf~~~~k~ndvev-----KEkd~~~~kwik~~ele~  186 (203)
T COG4112         137 ---FLGLINDD---------TNEVGKVHIGALFLGRGKFNDVEV-----KEKDLFEWKWIKLEELEK  186 (203)
T ss_pred             ---eeeeecCC---------CcccceEEEEEEEEeeccccceee-----eecceeeeeeeeHHHHHH
Confidence               01111100         011223333344544444333332     344778999999999997

>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]

Probab=97.41  E-value=0.00017  Score=59.36  Aligned_cols=39  Identities=31%  Similarity=0.448  Sum_probs=33.5

Q ss_pred             EEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhC
Q 026407           84 KIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETG  123 (239)
Q Consensus        84 ~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtG  123 (239)
                      +++.++|... |.|.+|||.+|+||.+..+++||+.||.=
T Consensus       140 e~vavkr~d~-~~WAiPGGmvdpGE~vs~tLkRef~eEa~  178 (275)
T KOG4195|consen  140 EFVAVKRPDN-GEWAIPGGMVDPGEKVSATLKREFGEEAM  178 (275)
T ss_pred             EEEEEecCCC-CcccCCCCcCCchhhhhHHHHHHHHHHHH
Confidence            3445777663 89999999999999999999999999974

>PRK13910 DNA glycosylase MutY; Provisional

Probab=97.18  E-value=0.0035  Score=54.67  Aligned_cols=60  Identities=8%  Similarity=-0.048  Sum_probs=34.1

Q ss_pred             CCCCCCCCcCCCccccccccCCCCCCCC-ceeeEEEEEEeCCCCEEEEEEecCC--CCcEEcCce
Q 026407           41 KPLCCSCDDSSSSLSSFTALSTETPPDG-YRRNVGICLINSSKKKIFAATRIHI--PYTWQMPQG  102 (239)
Q Consensus        41 ~~~~c~~~~~~~a~~~~~~~~~~~~~~~-~~~~v~v~i~~~~~~~vLl~~r~~~--~~~w~~PgG  102 (239)
                      .|..||+...|.+..+.........+.. .+....++++ .++ ++||.||..+  +|+|+||+.
T Consensus       156 ~C~~CPl~~~C~~~~~~~~~~~~~kk~~~~~~~~~~~~~-~~~-~~ll~kr~~~l~~gl~~fP~~  218 (289)
T PRK13910        156 KCAICPLNPYCLGKNNPEKHTLKKKQEIVQEERYLGVVI-QNN-QIALEKIEQKLYLGMHHFPNL  218 (289)
T ss_pred             CCCCCcChhhhhhhhcCCccccCCCCCCCceEEEEEEEE-ECC-EEEEEECCCchhcccccCCCC
Confidence            3344999999987664333222222222 2222333444 345 8999998531  299999963

>TIGR01084 mutY A/G-specific adenine glycosylase

Probab=96.68  E-value=0.0062  Score=52.81  Aligned_cols=62  Identities=16%  Similarity=0.109  Sum_probs=36.5

Q ss_pred             CCCCCCCCCcCCCccccc--cccCCCCCCCC-ceeeEEE-EEEeCCCCEEEEEEecCCC---CcEEcCce
Q 026407           40 RKPLCCSCDDSSSSLSSF--TALSTETPPDG-YRRNVGI-CLINSSKKKIFAATRIHIP---YTWQMPQG  102 (239)
Q Consensus        40 ~~~~~c~~~~~~~a~~~~--~~~~~~~~~~~-~~~~v~v-~i~~~~~~~vLl~~r~~~~---~~w~~PgG  102 (239)
                      |.|..||+...|.+....  ...+...++.. ......+ ++.+.++ ++|+++|...+   |+|+||+.
T Consensus       193 P~C~~Cpl~~~C~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~r~~~~~~~gl~~~p~~  261 (275)
T TIGR01084       193 PKCDLCPLQDFCLAYQQGTWEEYPVKKPKAAPPERTTYFLVLQNYDG-EVLLEQRPEKGLWGGLYCFPQF  261 (275)
T ss_pred             CCCCCCCChhhCHHHHcCCHhhcCCCCCCCCCCeEEEEEEEEEeCCC-eEEEEeCCCCchhhccccCCCC
Confidence            344449999998865532  22233322221 2223333 4445555 89999997764   99999974

This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.

>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A

Probab=96.38  E-value=0.016  Score=47.12  Aligned_cols=58  Identities=24%  Similarity=0.393  Sum_probs=39.5

Q ss_pred             CCceeeEE-EEEEeCCC-CEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCcc
Q 026407           67 DGYRRNVG-ICLINSSK-KKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTS  126 (239)
Q Consensus        67 ~~~~~~v~-v~i~~~~~-~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~  126 (239)
                      .+.|..|. |++++..+ .+|||.+...  ..|.+|||.+.+||+.++++.|.+.+-.|...
T Consensus        40 ~GmRrsVe~Vllvh~h~~PHvLLLq~~~--~~fkLPGg~l~~gE~e~~gLkrkL~~~l~~~~   99 (188)
T PF13869_consen   40 EGMRRSVEGVLLVHEHGHPHVLLLQIGN--TFFKLPGGRLRPGEDEIEGLKRKLTEKLSPED   99 (188)
T ss_dssp             HSSEEEEEEEEEEEETTEEEEEEEEETT--TEEE-SEEE--TT--HHHHHHHHHHHHHB-SS
T ss_pred             hCCceEEEEEEEEecCCCcEEEEEeccC--ccccCCccEeCCCCChhHHHHHHHHHHcCCCc
Confidence            34566664 45555444 3788877655  59999999999999999999999999999763

...

>COG1194 MutY A/G-specific DNA glycosylase [DNA replication, recombination, and repair]

Probab=96.14  E-value=0.0097  Score=52.66  Aligned_cols=66  Identities=18%  Similarity=0.241  Sum_probs=44.2

Q ss_pred             CCCCCCCCCcCCCccccccc--cCCCCCCC-CceeeEEEEEEeCCCCEEEEEEecCCC---CcEEcCceecCC
Q 026407           40 RKPLCCSCDDSSSSLSSFTA--LSTETPPD-GYRRNVGICLINSSKKKIFAATRIHIP---YTWQMPQGGADE  106 (239)
Q Consensus        40 ~~~~~c~~~~~~~a~~~~~~--~~~~~~~~-~~~~~v~v~i~~~~~~~vLl~~r~~~~---~~w~~PgG~ve~  106 (239)
                      |.|.-||+...|.+..+...  .+.+..+. ..+..++.++.+.++ +++|.+|...+   |+|+||....+.
T Consensus       202 P~C~~CPl~~~c~a~~~g~~~~~P~k~~k~~~~~~~~~~~~~~~~~-~~~l~kr~~~gl~~gl~~fP~~e~~~  273 (342)
T COG1194         202 PKCSLCPLRDNCAAYRNGTPEKYPVKKPKKKLPRRFAAFLILNRDG-EVLLEKRPEKGLLGGLWCFPQFEDEA  273 (342)
T ss_pred             CCCCcCcchHHHHHHHcCCcccCCCcCcccccchheeeEEEEccCc-chhhhhCcccCceecccccccccccc
Confidence            55555999988887664433  23222222 224456667777777 89999998765   999999987655

>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]

Probab=95.63  E-value=0.029  Score=48.51  Aligned_cols=56  Identities=23%  Similarity=0.297  Sum_probs=44.4

Q ss_pred             eeEEEEEEeCCCCEEEEEEecCC--------C--------------------CcEEcCceecCCCCCHHHHHHHHHHHHh
Q 026407           71 RNVGICLINSSKKKIFAATRIHI--------P--------------------YTWQMPQGGADEGEDLINAALRELREET  122 (239)
Q Consensus        71 ~~v~v~i~~~~~~~vLl~~r~~~--------~--------------------~~w~~PgG~ve~gEs~~~aa~REl~EEt  122 (239)
                      ..|.+++++.+..++|++|....        +                    -..++.||.++.+-|+.+-|..|+.||+
T Consensus        27 ~~v~ill~~r~~eq~l~vrqfr~ai~~~~~s~~~~~~~~~~~d~~~~~~e~g~tielc~g~idke~s~~eia~eev~eec  106 (405)
T KOG4432|consen   27 SSVSILLFHRDLEQFLLVRQFRPAIFTASNSPENHGKEFDKIDWSSYDSETGYTIELCAGLIDKELSPREIASEEVAEEC  106 (405)
T ss_pred             cceEEEEEccchhhhehhhhhchhheecccCCCCCCcccccccHhhCCCccceeeeeeccccccccCHHHHhHHHHHHHh
Confidence            36788888888777887664210        0                    1257789999999999999999999999


Q ss_pred             CCcc
Q 026407          123 GVTS  126 (239)
Q Consensus       123 Gl~~  126 (239)
                      |+++
T Consensus       107 gy~v  110 (405)
T KOG4432|consen  107 GYRV  110 (405)
T ss_pred             CCcC
Confidence            9987

>KOG4548 consensus Mitochondrial ribosomal protein L17 [Translation, ribosomal structure and biogenesis]

Probab=95.61  E-value=0.099  Score=44.17  Aligned_cols=43  Identities=19%  Similarity=0.248  Sum_probs=36.6

Q ss_pred             EEEEEEec-CCCCcEEcCceec-CCCCCHHHHHHHHHHHHhCCcc
Q 026407           84 KIFAATRI-HIPYTWQMPQGGA-DEGEDLINAALRELREETGVTS  126 (239)
Q Consensus        84 ~vLl~~r~-~~~~~w~~PgG~v-e~gEs~~~aa~REl~EEtGl~~  126 (239)
                      -+||++|. +..+.|.||.+.+ ++++++..+|.|+|.+-.|-..
T Consensus       140 LyLLV~~k~g~~s~w~fP~~~~s~~~~~lr~~ae~~Lk~~~ge~~  184 (263)
T KOG4548|consen  140 LYLLVKRKFGKSSVWIFPNRQFSSSEKTLRGHAERDLKVLSGENK  184 (263)
T ss_pred             EEEEEeeccCccceeeCCCcccCCccchHHHHHHHHHHHHhcchh
Confidence            67777765 3348999999999 8999999999999999999654

>KOG1689 consensus mRNA cleavage factor I subunit [RNA processing and modification]

Probab=94.14  E-value=0.13  Score=40.84  Aligned_cols=58  Identities=24%  Similarity=0.411  Sum_probs=42.5

Q ss_pred             CCCceeeE-EEEEEeCC-CCEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCc
Q 026407           66 PDGYRRNV-GICLINSS-KKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVT  125 (239)
Q Consensus        66 ~~~~~~~v-~v~i~~~~-~~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~  125 (239)
                      +.+.|..| +++++.+. -.+|||.+-..  -.+.+|||.+++||+-.+.+.|-+-|-+|-.
T Consensus        65 k~gmRrsvegvlivheH~lPHvLLLQig~--tf~KLPGG~L~pGE~e~~Gl~r~l~~~Lgr~  124 (221)
T KOG1689|consen   65 KEGMRRSVEGVLIVHEHNLPHVLLLQIGN--TFFKLPGGRLRPGEDEADGLKRLLTESLGRS  124 (221)
T ss_pred             hhhhhheeeeeEEEeecCCCeEEEEeeCC--EEEecCCCccCCCcchhHHHHHHHHHHhccc
Confidence            44566666 44555443 24677654433  5899999999999999999999999999943

>KOG4313 consensus Thiamine pyrophosphokinase [Nucleotide transport and metabolism]

Probab=94.05  E-value=0.26  Score=41.62  Aligned_cols=103  Identities=17%  Similarity=0.254  Sum_probs=63.5

Q ss_pred             EEEEEEecCC----CCcE-EcCceecCCCCCHHHHHHHHHHHHhCCcc---ceeeeccCceeeecCchhhhhhcccccCC
Q 026407           84 KIFAATRIHI----PYTW-QMPQGGADEGEDLINAALRELREETGVTS---AEFLAETPYWLTYDFPLKVKQKLNRRWGT  155 (239)
Q Consensus        84 ~vLl~~r~~~----~~~w-~~PgG~ve~gEs~~~aa~REl~EEtGl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (239)
                      .+.+.||++.    ||.| ...||++.-|-.+.++|+.|..||..++.   ..+..  .+-++|-+..      +++|  
T Consensus       149 ~iWvprRS~TKqTWP~~lDN~vaGGl~~g~gI~eT~iKE~~EEAnl~~~~~~Nlv~--~G~VSy~~~e------sr~~--  218 (306)
T KOG4313|consen  149 CIWVPRRSNTKQTWPGKLDNMVAGGLSVGFGIKETAIKEAAEEANLPSDLVKNLVS--AGCVSYYKFE------SRQG--  218 (306)
T ss_pred             EEEecccCCccccCcchhhhhhccccccCchHHHHHHHHHHHhcCCchhhHhccee--cceeEEEeee------hhhc--
Confidence            4566777654    3777 45799999999999999999999999986   12222  1222222100      1111  


Q ss_pred             cccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh
Q 026407          156 NYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV  203 (239)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~  203 (239)
                       +  +...-|+|.+.-... +-.   ...+.|++.+.-+++.+..+.+
T Consensus       219 -~--~pe~qYVfDL~l~~d-~iP---~~nDGEV~~F~Lltl~~~v~~l  259 (306)
T KOG4313|consen  219 -L--FPETQYVFDLELPLD-FIP---QNNDGEVQAFELLTLKDCVERL  259 (306)
T ss_pred             -c--CccceEEEeccCchh-hcC---CCCCCceeeEeeecHHHHHHHH
Confidence             1  113334555543221 111   1235699999999999998866

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	239
1f3y_A	165	Solution Structure Of The Nudix Enzyme Diadenosine		2e-59
2kdv_A	164	Solution Structure Of Rna Pyrophosphohydrolase Rpph		2e-17
2kdw_A	164	Solution Structure Of Rpph Mutant E53a From Escheri		9e-17

>pdb|1F3Y|A Chain A, Solution Structure Of The Nudix Enzyme Diadenosine Tetraphosphate Hydrolase From Lupinus Angustifolius L. Length = 165

Iteration: 1
 Score =  224 bits (572), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 103/141 (73%), Positives = 125/141 (88%), Gaps = 1/141 (0%)
Query: 61  STETPPDGYRRNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELRE 120
           S ++PP+GYRRNVGICL+N+ KK IFAA+R+ IP  WQMPQGG DEGED  NAA+RELRE
Sbjct: 5   SMDSPPEGYRRNVGICLMNNDKK-IFAASRLDIPDAWQMPQGGIDEGEDPRNAAIRELRE 63
Query: 121 ETGVTSAEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLG 180
           ETGVTSAE +AE PYWLTYDFP KV++KLN +WG+++KGQAQKWFLFKFTG+++EINLLG
Sbjct: 64  ETGVTSAEVIAEVPYWLTYDFPPKVREKLNIQWGSDWKGQAQKWFLFKFTGQDQEINLLG 123
Query: 181 DGSEKPEFNEWRWMFPEQVLE 201
           DGSEKPEF EW W+ PEQ+++
Sbjct: 124 DGSEKPEFGEWSWVTPEQLID 144

>pdb|2KDV|A Chain A, Solution Structure Of Rna Pyrophosphohydrolase Rpph From Escherichia Coli Length = 164

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/132 (40%), Positives = 70/132 (53%), Gaps = 13/132 (9%)
Query: 67  DGYRRNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTS 126
           DGYR NVGI + N   + ++A  R    ++WQ PQGG + GE    A  REL EE G++ 
Sbjct: 5   DGYRPNVGIVICNRQGQVMWA--RRFGQHSWQFPQGGINPGESAEQAMYRELFEEVGLSR 62
Query: 127 AE--FLAETPYWLTYDFPLKVKQKLNRRWGTN--YKGQAQKWFLFKFTGKEEEINLLGDG 182
            +   LA T  WL Y  P ++      RW T     GQ QKWFL +    + EIN+    
Sbjct: 63  KDVRILASTRNWLRYKLPKRLV-----RWDTKPVCIGQKQKWFLLQLVSGDAEINM--QT 115
Query: 183 SEKPEFNEWRWM 194
           S  PEF+ WRW+
Sbjct: 116 SSTPEFDGWRWV 127

>pdb|2KDW|A Chain A, Solution Structure Of Rpph Mutant E53a From Escherichia Coli Length = 164

Iteration: 1
 Score = 83.6 bits (205), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 52/132 (39%), Positives = 69/132 (52%), Gaps = 13/132 (9%)
Query: 67  DGYRRNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTS 126
           DGYR NVGI + N   + ++A  R    ++WQ PQGG + GE    A  R L EE G++ 
Sbjct: 5   DGYRPNVGIVICNRQGQVMWA--RRFGQHSWQFPQGGINPGESAEQAMYRALFEEVGLSR 62
Query: 127 AE--FLAETPYWLTYDFPLKVKQKLNRRWGTN--YKGQAQKWFLFKFTGKEEEINLLGDG 182
            +   LA T  WL Y  P ++      RW T     GQ QKWFL +    + EIN+    
Sbjct: 63  KDVRILASTRNWLRYKLPKRLV-----RWDTKPVCIGQKQKWFLLQLVSGDAEINM--QT 115
Query: 183 SEKPEFNEWRWM 194
           S  PEF+ WRW+
Sbjct: 116 SSTPEFDGWRWV 127

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	239
1f3y_A	165	Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase	9e-73
2kdv_A	164	RNA pyrophosphohydrolase; nudix family, magnesium,	1e-62
2o1c_A	150	DATP pyrophosphohydrolase; nudix NTP hydrolase NTP	3e-36
1ktg_A	138	Diadenosine tetraphosphate hydrolase; nudix, AMP,	2e-26
1xsa_A	153	BIS(5'-nucleosyl)-tetraphosphatase; nudix enzyme,	9e-26
3son_A	149	Hypothetical nudix hydrolase; structural genomics,	2e-20
3h95_A	199	Nucleoside diphosphate-linked moiety X motif 6; NU	7e-15
2a6t_A	271	SPAC19A8.12; alpha/beta/alpha, RNA binding protein	4e-14
2jvb_A	146	Protein PSU1, mRNA-decapping enzyme subunit 2; DCP	3e-13
1rya_A	160	GDP-mannose mannosyl hydrolase; GDP-glucose, nudix	1e-11
3fjy_A	364	Probable MUTT1 protein; dimer, protein structure i	1e-11
2fvv_A	194	Diphosphoinositol polyphosphate phosphohydrolase 1	4e-11
1k2e_A	156	Nudix homolog; nudix/MUTT-like fold, mixed alpha/b	3e-10
2pbt_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	4e-10
3f6a_A	159	Hydrolase, nudix family; protein structure initiat	5e-10
1vcd_A	126	NDX1; nudix protein, diadenosine polyphosphate, AP	6e-10
3fcm_A	197	Hydrolase, nudix family; protein structure initiat	4e-09
2azw_A	148	MUTT/nudix family protein; MUTT/nudix ,enterococcu	6e-09
2w4e_A	145	MUTT/nudix family protein; ADP-ribose pyrophosphat	2e-08
3id9_A	171	MUTT/nudix family protein; hydrolase, protein stru	4e-08
1v8y_A	170	ADP-ribose pyrophosphatase; nudix motif, loop-heli	4e-08
1sjy_A	159	MUTT/nudix family protein; nudix fold, alpha-beta-	5e-08
1vhz_A	198	ADP compounds hydrolase NUDE; structural genomics;	6e-08
2fkb_A	180	Putative nudix hydrolase YFCD; putative protein, M	1e-07
2yvp_A	182	NDX2, MUTT/nudix family protein; nudix protein, AD	1e-07
3shd_A	153	Phosphatase NUDJ; nudix fold, nudix motif, hydrola	2e-07
2b0v_A	153	Nudix hydrolase; structural genomics, PSI, protein	2e-07
3oga_A	165	Nucleoside triphosphatase NUDI; salmonella enteric	3e-07
2yyh_A	139	MUTT domain, 8-OXO-DGTPase domain; nudix family pr	4e-07
1mk1_A	207	ADPR pyrophosphatase; nudix hydrolase, adprase, ad	7e-07
3grn_A	153	MUTT related protein; structural genomics, hydrola	1e-06
2dsc_A	212	ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP	2e-06
3f13_A	163	Putative nudix hydrolase family member; structural	2e-06
3gg6_A	156	Nudix motif 18, nucleoside diphosphate-linked moie	2e-06
4dyw_A	157	MUTT/nudix family protein; structural genomics, ni	3e-06
2pqv_A	154	MUTT/nudix family protein; structu genomics, PSI-2	4e-06
2qjt_B	352	Nicotinamide-nucleotide adenylyltransferase; two i	4e-06
1hzt_A	190	Isopentenyl diphosphate delta-isomerase; dimethyla	4e-06
3eds_A	153	MUTT/nudix family protein; MUT/nudix protein, prot	5e-06
1q27_A	171	Putative nudix hydrolase DR0079; radiation resista	6e-06
3i9x_A	187	MUTT/nudix family protein; structural genomics, hy	1e-05
3q1p_A	205	Phosphohydrolase (MUTT/nudix family protein); asym	1e-05
1g0s_A	209	Hypothetical 23.7 kDa protein in ICC-TOLC intergen	2e-05
1mut_A	129	MUTT, nucleoside triphosphate pyrophosphohydrolase	3e-05
3hhj_A	158	Mutator MUTT protein; niaid, ssgcid, decode, UW, S	5e-05
3cng_A	189	Nudix hydrolase; structural genomics, APC7497, PSI	5e-05
3exq_A	161	Nudix family hydrolase; protein structure initiati	5e-05
3o8s_A	206	Nudix hydrolase, ADP-ribose pyrophosphatase; struc	6e-05
3fk9_A	188	Mutator MUTT protein; structural genomics, hydrola	7e-05
3r03_A	144	Nudix hydrolase; structural genomics, PSI2, protei	1e-04
1q33_A	292	Pyrophosphatase, ADP-ribose pyrophosphatase; nudix	1e-04
2fml_A	273	MUTT/nudix family protein; structural genomics, PS	1e-04
2b06_A	155	MUTT/nudix family protein; structural genomics, P	1e-04
2rrk_A	140	ORF135, CTP pyrophosphohydrolase; NMR {Escherichia	2e-04
1nqz_A	194	COA pyrophosphatase (MUTT/nudix family protein); D	2e-04
3gwy_A	140	Putative CTP pyrophosphohydrolase; structural geno	4e-04
2qjo_A	341	Bifunctional NMN adenylyltransferase/nudix hydrol;	6e-04
3ees_A	153	Probable pyrophosphohydrolase; nudix, RNA pyrophos	8e-04

>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A* Length = 165

 Score =  217 bits (556), Expect = 9e-73
 Identities = 104/163 (63%), Positives = 130/163 (79%), Gaps = 13/163 (7%)

Query: 63  ETPPDGYRRNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREET 122
           ++PP+GYRRNVGICL+N+  KKIFAA+R+ IP  WQMPQGG DEGED  NAA+RELREET
Sbjct: 7   DSPPEGYRRNVGICLMNN-DKKIFAASRLDIPDAWQMPQGGIDEGEDPRNAAIRELREET 65

Query: 123 GVTSAEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDG 182
           GVTSAE +AE PYWLTYDFP KV++KLN +WG+++KGQAQKWFLFKFTG+++EINLLGDG
Sbjct: 66  GVTSAEVIAEVPYWLTYDFPPKVREKLNIQWGSDWKGQAQKWFLFKFTGQDQEINLLGDG 125

Query: 183 SEKPEFNEWRWMFPEQVLERV--------RKPCGLIFRYFSPF 217
           SEKPEF EW W+ PEQ+++          ++    +   F+P 
Sbjct: 126 SEKPEFGEWSWVTPEQLIDLTVEFKKPVYKE----VLSVFAPH 164

>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A Length = 164

 Score =  192 bits (490), Expect = 1e-62
 Identities = 52/140 (37%), Positives = 70/140 (50%), Gaps = 9/140 (6%)

Query: 66  PDGYRRNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVT 125
            DGYR NVGI + N  + ++  A R    ++WQ PQGG + GE    A  REL EE G++
Sbjct: 4   DDGYRPNVGIVICNR-QGQVMWARRFG-QHSWQFPQGGINPGESAEQAMYRELFEEVGLS 61

Query: 126 --SAEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGS 183
                 LA T  WL Y  P   K+ +         GQ QKWFL +    + EIN+    S
Sbjct: 62  RKDVRILASTRNWLRYKLP---KRLVRWDTKPVCIGQKQKWFLLQLVSGDAEINM--QTS 116

Query: 184 EKPEFNEWRWMFPEQVLERV 203
             PEF+ WRW+     + +V
Sbjct: 117 STPEFDGWRWVSYWYPVRQV 136

>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A Length = 150

 Score =  124 bits (313), Expect = 3e-36
 Identities = 28/144 (19%), Positives = 49/144 (34%), Gaps = 17/144 (11%)

Query: 68  GYRRNVGICLI--NSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVT 125
            Y+R V I ++      K++    R   P  WQ   G  +EGE    AA+RE++EE  + 
Sbjct: 5   VYKRPVSILVVIYAQDTKRVLMLQRRDDPDFWQSVTGSVEEGETAPQAAMREVKEEVTID 64

Query: 126 SAE---FLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDG 182
                  L +    + ++        L  R+        + WF       E +I      
Sbjct: 65  VVAEQLTLIDCQRTVEFEIF----SHLRHRYAPGVTRNTESWFCLAL-PHERQIVF---- 115

Query: 183 SEKPEFNEWRWMFPEQVLERVRKP 206
               E   ++W+         +  
Sbjct: 116 ---TEHLAYKWLDAPAAAALTKSW 136

>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A* Length = 138

 Score = 98.8 bits (247), Expect = 2e-26
 Identities = 30/135 (22%), Positives = 50/135 (37%), Gaps = 25/135 (18%)

Query: 73  VGICLINSSKKKI-FAATRIHIPY-TWQMPQGGADEGEDLINAALRELREETGVTSAEF- 129
            G+ +      KI F   +   P   W  P+G  D GED   AA+RE +EE  +T  +  
Sbjct: 6   AGLVIYRKLAGKIEFLLLQASYPPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLT 65

Query: 130 -LAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEF 188
              +    L Y+                 K ++ K++L K     +++ L        E 
Sbjct: 66  IHEDCHETLFYE--------------AKGKPKSVKYWLAKLNN-PDDVQL------SHEH 104

Query: 189 NEWRWMFPEQVLERV 203
             W+W   E  ++  
Sbjct: 105 QNWKWCELEDAIKIA 119

>1xsa_A BIS(5'-nucleosyl)-tetraphosphatase; nudix enzyme, human AP4A hydrolase, alpha-beta; NMR {Homo sapiens} SCOP: d.113.1.1 PDB: 1xsb_A 1xsc_A* Length = 153

 Score = 97.5 bits (243), Expect = 9e-26
 Identities = 27/137 (19%), Positives = 48/137 (35%), Gaps = 23/137 (16%)

Query: 69  YRRNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSA- 127
           +RR +   + N+   +          + W  P+G  + GED +  ALR  +EE G+ +  
Sbjct: 16  FRRCLIPKVDNN-AIEFLLLQASDGIHHWTPPKGHVEPGEDDLETALRATQEEAGIEAGQ 74

Query: 128 -EFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKP 186
              +      L Y    K K                 ++L +    + EI L        
Sbjct: 75  LTIIEGFKRELNYVARNKPKT--------------VIYWLAEVKDYDVEIRL------SH 114

Query: 187 EFNEWRWMFPEQVLERV 203
           E   +RW+  E+  +  
Sbjct: 115 EHQAYRWLGLEEACQLA 131

>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes} Length = 149

 Score = 83.5 bits (206), Expect = 2e-20
 Identities = 21/131 (16%), Positives = 37/131 (28%), Gaps = 15/131 (11%)

Query: 73  VGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAE 132
           V   +   +  +     R      WQ   GG ++ E +   A RE  EE  +     +  
Sbjct: 10  VIPFIKTEANYQFGVLHRTD-ADVWQFVAGGGEDEEAISETAKRESIEELNLDVDVKMYS 68

Query: 133 TPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWR 192
                    P                   +  F    T    ++ L        E +E R
Sbjct: 69  LDSH--ASIPNF------HFSFNKPYVVPEYCFAIDLTSCSYQVTLS------LEHSELR 114

Query: 193 WMFPEQVLERV 203
           W+  E  ++ +
Sbjct: 115 WVSYESAIQLL 125

>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens} Length = 199

 Score = 69.6 bits (170), Expect = 7e-15
 Identities = 26/138 (18%), Positives = 53/138 (38%), Gaps = 20/138 (14%)

Query: 65  PPDGYRRNVGICLINSSKKKIFAATRIHIPY-TWQMPQGGADEGEDLINAALRELREETG 123
               ++  V   + + S +KI      +     W+ P G ++  ED+ + A+RE+ EETG
Sbjct: 21  QSMSHQVGVAGAVFDESTRKILVVQDRNKLKNMWKFPGGLSEPEEDIGDTAVREVFEETG 80

Query: 124 VTSAEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGS 183
           +  +EF +           L ++Q+          G++  + + +       IN   +  
Sbjct: 81  IK-SEFRS----------VLSIRQQHTNPGA---FGKSDMYIICRLKPYSFTINFCQE-- 124

Query: 184 EKPEFNEWRWMFPEQVLE 201
              E     WM    + +
Sbjct: 125 ---ECLRCEWMDLNDLAK 139

>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B* Length = 271

 Score = 68.9 bits (168), Expect = 4e-14
 Identities = 24/163 (14%), Positives = 55/163 (33%), Gaps = 26/163 (15%)

Query: 69  YRRNV---GICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVT 125
           Y+  +   G  +++ S ++            W  P+G  D+ E  ++ A+RE+ EETG  
Sbjct: 97  YKTRIPVRGAIMLDMSMQQCVLVKGWKASSGWGFPKGKIDKDESDVDCAIREVYEETGFD 156

Query: 126 SAEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEK 185
            +  +    +                      +GQ  + ++      +           +
Sbjct: 157 CSSRINPNEF-----------------IDMTIRGQNVRLYIIPGISLDTRFE----SRTR 195

Query: 186 PEFNEWRWMFPEQVLERVRKPCGLIFRYFSPFCLAPFMIYLKE 228
            E ++  W     +    +     +   F  + + PF+  LK+
Sbjct: 196 KEISKIEWHNLMDLPTFKKNKPQTMKNKF--YMVIPFLAPLKK 236

>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae} Length = 146

 Score = 64.1 bits (156), Expect = 3e-13
 Identities = 24/156 (15%), Positives = 56/156 (35%), Gaps = 24/156 (15%)

Query: 73  VGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAE 132
            G  + N +  KI          +W  P+G   + E+ I+  +RE++EE G    +++ +
Sbjct: 7   RGAAIFNENLSKILLVQGTESD-SWSFPRGKISKDENDIDCCIREVKEEIGFDLTDYIDD 65

Query: 133 TPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWR 192
             +                    N +G+  K FL     +              E ++  
Sbjct: 66  NQF-----------------IERNIQGKNYKIFLISGVSEVFNFKPQVRN----EIDKIE 104

Query: 193 WMFPEQVLERVRKPCGLIFRYFSPFCLAPFMIYLKE 228
           W   +++ + + K   + +   +   + P  ++L+ 
Sbjct: 105 WFDFKKISKTMYKS-NIKYYLINSM-MRPLSMWLRH 138

>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A* Length = 160

 Score = 60.3 bits (146), Expect = 1e-11
 Identities = 24/131 (18%), Positives = 47/131 (35%), Gaps = 16/131 (12%)

Query: 73  VGICLINSSKKKIFAATRIHIPY--TWQMPQGGADEGEDLINAALRELREETGVTSAEFL 130
           +   + NS + +     R + P    W +P G   + E L  A  R    E G+      
Sbjct: 21  LDFIVENS-RGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITA 79

Query: 131 AETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNE 190
            +      + +           + T+Y         F+F   EEE+ L  +     + ++
Sbjct: 80  GQFYGVWQHFYD---DNFSGTDFTTHY-----VVLGFRFRVSEEELLLPDE-----QHDD 126

Query: 191 WRWMFPEQVLE 201
           +RW+  + +L 
Sbjct: 127 YRWLTSDALLA 137

>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID} Length = 364

 Score = 62.6 bits (151), Expect = 1e-11
 Identities = 22/142 (15%), Positives = 49/142 (34%), Gaps = 17/142 (11%)

Query: 97  WQMPQGGADEGEDLINAALRELREETGVTSA--EFLAETPYWLTYDFPLKVKQKLNRRWG 154
           W  P+G  ++ E   +AA+RE+ EETG       +L E  Y L+ +      +K      
Sbjct: 51  WSWPKGKLEQNETHRHAAVREIGEETGSPVKLGPYLCEVEYPLSEE-----GKKTRHSHD 105

Query: 155 TNYKGQAQKWFLFKFTGKEEEINLLGDGSEK-----PEFNEWRWMFPEQVLERV-----R 204
                +   +++ +    ++  +LL            E N+  W+   +  + +     +
Sbjct: 106 CTADTKHTLYWMAQPISADDAEHLLDAFGPVHRADVGEINDIVWVSVREARKILSHSTDK 165

Query: 205 KPCGLIFRYFSPFCLAPFMIYL 226
               +              + +
Sbjct: 166 DTLAVFVDRVQEGAATAQNLLI 187

>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A* Length = 194

 Score = 59.7 bits (144), Expect = 4e-11
 Identities = 30/131 (22%), Positives = 57/131 (43%), Gaps = 13/131 (9%)

Query: 48  DDSSSSLSSFTALSTET------PPDGYRRNVG-ICLINSSKKKIFAATRIHIPYTWQMP 100
           D  + +L   + +  ++        DGY++    +C  + S++++   +    P  W +P
Sbjct: 12  DLGTENLYFQSMMKLKSNQTRTYDGDGYKKRAACLCFRSESEEEVLLVSSSRHPDRWIVP 71

Query: 101 QGGADEGEDLINAALRELREETGVT------SAEFLAETPYWLTYDFPLKVKQKLNRRWG 154
            GG +  E+   AA+RE+ EE GV          F  +     TY + L V + L     
Sbjct: 72  GGGMEPEEEPSVAAVREVCEEAGVKGTLGRLVGIFENQERKHRTYVYVLIVTEVLEDWED 131

Query: 155 TNYKGQAQKWF 165
           +   G+ ++WF
Sbjct: 132 SVNIGRKREWF 142

>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A Length = 156

 Score = 56.4 bits (136), Expect = 3e-10
 Identities = 17/105 (16%), Positives = 31/105 (29%), Gaps = 11/105 (10%)

Query: 97  WQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQKLNRRWGTN 156
           +  P G  +  E  I A  RE  EETG+   E +  T   +  +   +    +       
Sbjct: 25  YIYPGGHVEHNETPIEAVKREFEEETGIV-VEPIGFTYGIIDENAVERPMPLVILEEVVK 83

Query: 157 YKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLE 201
           Y  +    F   +  K              +     W+   ++  
Sbjct: 84  YPEETHIHFDLIYLVKRVG----------GDLKNGEWIDVREIDR 118

>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124} Length = 159

 Score = 55.8 bits (134), Expect = 5e-10
 Identities = 18/109 (16%), Positives = 28/109 (25%), Gaps = 10/109 (9%)

Query: 97  WQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPL-KVKQKLNRRWGT 155
                G  +  E    A +RE +EE G+            L     L   K  +N     
Sbjct: 30  MLPLGGHIEVNELPEEACIREAKEEAGLN-VTLYNPIDINLKKSCDLSGEKLLINPIHTI 88

Query: 156 NYKGQAQKW---FLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLE 201
                       F++  T    E +         E    +W   E +  
Sbjct: 89  LGDVSPNHSHIDFVYYATTTSFETSPEIG-----ESKILKWYSKEDLKN 132

>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A* Length = 126

 Score = 54.6 bits (132), Expect = 6e-10
 Identities = 28/107 (26%), Positives = 38/107 (35%), Gaps = 24/107 (22%)

Query: 97  WQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQKLNRRWGTN 156
           W  P+G  + GE L  AA+RE+ EETGV  AE L        Y  P K  ++        
Sbjct: 26  WVFPKGHPEPGESLEEAAVREVWEETGV-RAEVLLPLY-PTRYVNP-KGVEREVH----- 77

Query: 157 YKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV 203
                  WFL +  G             +       W  PE+    +
Sbjct: 78  -------WFLMRGEGAPR---------LEEGMTGAGWFSPEEARALL 108

>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124} Length = 197

 Score = 53.9 bits (129), Expect = 4e-09
 Identities = 21/112 (18%), Positives = 44/112 (39%), Gaps = 11/112 (9%)

Query: 96  TWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLT-YDFPLKVKQKLNRRWG 154
           +W    G +D  +D +  A++EL+EETGV +   L +  + L        +K+       
Sbjct: 70  SWAWTGGHSDNEKDQLKVAIKELKEETGVKNPTPLLDKAFALDVLTVNGHIKRGKYVSSH 129

Query: 155 TNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRKP 206
            +          +     E+E  +L +     E +   W+   ++ +   +P
Sbjct: 130 LHL------NLTYLIECSEDETLMLKED----ENSGVMWIPFNEISKYCSEP 171

>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1 Length = 148

 Score = 52.5 bits (126), Expect = 6e-09
 Identities = 19/139 (13%), Positives = 39/139 (28%), Gaps = 24/139 (17%)

Query: 70  RRNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETG--VTSA 127
           R    I +       +      +    + +P G  +  E    A  RE+ EE G  V   
Sbjct: 18  RYAAYIIVSKPENNTMVLVQAPNGA--YFLPGGEIEGTETKEEAIHREVLEELGISVEIG 75

Query: 128 EFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPE 187
            +L E   +   +                        + +      +      +  E   
Sbjct: 76  CYLGEADEYFYSNHRQTAYYNPG--------------YFYVANTWRQL----SEPLE--R 115

Query: 188 FNEWRWMFPEQVLERVRKP 206
            N   W+ PE+ +  +++ 
Sbjct: 116 TNTLHWVAPEEAVRLLKRG 134

>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans} Length = 145

 Score = 50.6 bits (122), Expect = 2e-08
 Identities = 15/35 (42%), Positives = 22/35 (62%)

Query: 95  YTWQMPQGGADEGEDLINAALRELREETGVTSAEF 129
              ++  GG ++GEDL  AA REL EE G  ++E+
Sbjct: 32  TITEIVAGGVEKGEDLGAAAARELLEEVGGAASEW 66

>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str} Length = 171

 Score = 50.5 bits (121), Expect = 4e-08
 Identities = 29/146 (19%), Positives = 45/146 (30%), Gaps = 24/146 (16%)

Query: 53  SLSSFTALSTETPPDGYRR--NVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDL 110
           SL  F                 V +  I    +K+    +      W +P G  + GE L
Sbjct: 2   SLEGFICKFNRKRRLYIENIMQVRVTGILIEDEKVLLVKQKVANRDWSLPGGRVENGETL 61

Query: 111 INAALRELREETG--VTSAEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFK 168
             A +RE+REETG  V   + L         D P                  +     F 
Sbjct: 62  EEAMIREMREETGLEVKIKKLLY------VCDKP--------------DASPSLLHITFL 101

Query: 169 FTGKEEEINLLGDGSEKPEFNEWRWM 194
               E EI L  +  +    ++ + +
Sbjct: 102 LERIEGEITLPSNEFDHNPIHDVQMV 127

>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A Length = 170

 Score = 50.3 bits (121), Expect = 4e-08
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 95  YTWQMPQGGADEGEDLINAALRELREETGVT 125
              ++P G  + GED + AA REL E+TG++
Sbjct: 60  APLEIPAGLIEPGEDPLEAARRELAEQTGLS 90

>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A* Length = 159

 Score = 50.2 bits (120), Expect = 5e-08
 Identities = 24/135 (17%), Positives = 44/135 (32%), Gaps = 27/135 (20%)

Query: 73  VGICLINSSKKKIFAATRIHIPYT------WQMPQGGADEGEDLINAALRELREETGVTS 126
            G+ L+N  +  I       IP        W +P G  ++GE+  +AA+RE  EETG+  
Sbjct: 16  AGVVLLNE-RGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLR- 73

Query: 127 AEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKP 186
              +    +   Y                +     +  +L +    +       D     
Sbjct: 74  ---VRPVKFLGAYLGRF-----------PDGVLILRHVWLAEPEPGQTLAPAFTDEIA-- 117

Query: 187 EFNEWRWMFPEQVLE 201
              E  ++  E   +
Sbjct: 118 ---EASFVSREDFAQ 129

>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A* Length = 198

 Score = 50.3 bits (121), Expect = 6e-08
 Identities = 13/35 (37%), Positives = 18/35 (51%)

Query: 95  YTWQMPQGGADEGEDLINAALRELREETGVTSAEF 129
           Y     +G  D GE +  AA REL+EE G  + + 
Sbjct: 75  YELGFSKGLIDPGESVYEAANRELKEEVGFGANDL 109

>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2 Length = 180

 Score = 49.3 bits (118), Expect = 1e-07
 Identities = 32/165 (19%), Positives = 51/165 (30%), Gaps = 38/165 (23%)

Query: 69  YRRNVGICLINSSKKKIF----AATRIHIPYTWQMPQGGA-DEGEDLINAALRELREETG 123
             R   I + +    KI       T+  +P       GG     E L+ +A RE  EE G
Sbjct: 36  RHRATYIVVHDG-MGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELG 94

Query: 124 VTSAEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGS 183
           +                     + K  R WG  +   +                L  D  
Sbjct: 95  IAGVP--------FAEHGQFYFEDKNCRVWGALFSCVS-----------HGPFALQED-- 133

Query: 184 EKPEFNEWRWMFPEQVLERVRKPCGLIFRYFSPFCLAPFMIYLKE 228
              E +E  W+ PE++  R  +        F+P  L    +++K 
Sbjct: 134 ---EVSEVCWLTPEEITARCDE--------FTPDSLKALALWMKR 167

>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A* Length = 182

 Score = 49.1 bits (118), Expect = 1e-07
 Identities = 15/35 (42%), Positives = 19/35 (54%)

Query: 95  YTWQMPQGGADEGEDLINAALRELREETGVTSAEF 129
           +  ++P G  DEGE    AA RELREE G  +   
Sbjct: 68  FLLEVPAGKVDEGETPEAAARRELREEVGAEAETL 102

>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A Length = 153

 Score = 48.2 bits (115), Expect = 2e-07
 Identities = 26/113 (23%), Positives = 45/113 (39%), Gaps = 23/113 (20%)

Query: 96  TWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQKLNRRWGT 155
            W  P G  +  E L+ AA REL EETG+++       P        +++ Q +      
Sbjct: 30  LWNQPAGHLEADETLVEAAARELWEETGISA------QPQHF-----IRMHQWIAPDKTP 78

Query: 156 NYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLE--RVRKP 206
                   +  F F  + E+I          + +  RW+  E++L+   +R P
Sbjct: 79  --------FLRFLFAIELEQI--CPTQPHDSDIDCCRWVSAEEILQASNLRSP 121

>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1 Length = 153

 Score = 47.9 bits (114), Expect = 2e-07
 Identities = 18/107 (16%), Positives = 28/107 (26%), Gaps = 20/107 (18%)

Query: 96  TWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQKLNRRWGT 155
               P G  + GE +I A  RE+ EETG +                           W  
Sbjct: 34  KLNQPAGHLEPGESIIQACSREVLEETGHS-----FLPEVLTGIY-----------HWTC 77

Query: 156 NYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLER 202
              G     F F       + +   D           W   +++  +
Sbjct: 78  ASNGTTYLRFTFSGQVVSFDPDRKLD----TGIVRAAWFSIDEIRAK 120

>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A Length = 165

 Score = 47.9 bits (114), Expect = 3e-07
 Identities = 23/141 (16%), Positives = 48/141 (34%), Gaps = 17/141 (12%)

Query: 65  PPDGYRRNVGICLINSSKKKIFAATR----IHIPYTWQMPQGGADEGEDLINAALRELRE 120
             +  R+   +C +  +                P  W +  GG + GE +  A  RE+RE
Sbjct: 21  QSNAMRQRTIVCPLIQNDGCYLLCKMADNRGVFPGQWALSGGGVEPGERIEEALRREIRE 80

Query: 121 ETGVTSAEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLG 180
           E G              T+   +++K   + R     +     + +F       +I +  
Sbjct: 81  ELGEQLILSDITP---WTFRDDIRIKTYADGR----QEEIYMIYLIFDCVSANRDICIND 133

Query: 181 DGSEKPEFNEWRWMFPEQVLE 201
           +        ++ W+ PE++  
Sbjct: 134 EFQ------DYAWVKPEELAL 148

>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus} Length = 139

 Score = 47.3 bits (113), Expect = 4e-07
 Identities = 15/36 (41%), Positives = 21/36 (58%)

Query: 90  RIHIPYTWQMPQGGADEGEDLINAALRELREETGVT 125
           R + P    +P G  + GE +  AA RE+REETG+ 
Sbjct: 32  RKYPPVGLALPGGFVEVGERVEEAAAREMREETGLE 67

>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A* Length = 207

 Score = 47.3 bits (113), Expect = 7e-07
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 95  YTWQMPQGGAD-EGEDLINAALRELREETGVTSAEF 129
             W++P G  D  GE     A RELREE G+ ++ +
Sbjct: 70  RLWELPAGLLDVAGEPPHLTAARELREEVGLQASTW 105

>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei} Length = 153

 Score = 45.8 bits (109), Expect = 1e-06
 Identities = 25/135 (18%), Positives = 39/135 (28%), Gaps = 32/135 (23%)

Query: 73  VGICLINSSKKKIFAATR----IHIPYTWQMPQGGADEGEDLINAALRELREETG--VTS 126
               LI + K +     R          W +P G  +  E L     RE+ EETG  +  
Sbjct: 10  SVYALIRNEKGEFLLLRRSENSRTNAGKWDLPGGKVNPDESLKEGVAREVWEETGITMVP 69

Query: 127 AEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKP 186
            +   +      ++   K                  K     F G         D     
Sbjct: 70  GDIAGQV----NFELTEK------------------KVIAIVFDGGYVV----ADVKLSY 103

Query: 187 EFNEWRWMFPEQVLE 201
           E  E+ W+  E++L 
Sbjct: 104 EHIEYSWVSLEKILG 118

>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A* Length = 212

 Score = 46.3 bits (110), Expect = 2e-06
 Identities = 16/29 (55%), Positives = 18/29 (62%)

Query: 95  YTWQMPQGGADEGEDLINAALRELREETG 123
           Y  + P G  D+GE    AALREL EETG
Sbjct: 92  YCIEFPAGLIDDGETPEAAALRELEEETG 120

>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum} Length = 163

 Score = 45.6 bits (108), Expect = 2e-06
 Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 8/73 (10%)

Query: 97  WQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQKLNRRWGTN 156
           + +P G A+ GE    A +RE+REETG+     +    Y   +  P    +         
Sbjct: 39  YNLPGGKANRGELRSQALIREIREETGLR----INSMLYLFDHITPFNAHKVYLCIAQGQ 94

Query: 157 YKG----QAQKWF 165
            K     +     
Sbjct: 95  PKPQNEIERIALV 107

>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens} Length = 156

 Score = 45.1 bits (107), Expect = 2e-06
 Identities = 11/30 (36%), Positives = 19/30 (63%)

Query: 96  TWQMPQGGADEGEDLINAALRELREETGVT 125
           +W +P G  + GE ++ A  RE++EE G+ 
Sbjct: 47  SWYLPAGRMEPGETIVEALQREVKEEAGLH 76

>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei} Length = 157

 Score = 44.7 bits (106), Expect = 3e-06
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 96  TWQMPQGGADEGEDLINAALRELREETGVT 125
            W +P G  D  E +  A  RE+ EE G+ 
Sbjct: 55  CWGLPGGKVDWLEPVERAVCREIEEELGIA 84

>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae} Length = 154

 Score = 44.7 bits (106), Expect = 4e-06
 Identities = 9/47 (19%), Positives = 16/47 (34%), Gaps = 2/47 (4%)

Query: 96  TWQMPQGGADEGEDLINAALRELREETG--VTSAEFLAETPYWLTYD 140
            +    G     E   +A +RE++EE G    + +           D
Sbjct: 40  KYYTIGGAIQVNESTEDAVVREVKEELGVKAQAGQLAFVVENRFEVD 86

>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B Length = 352

 Score = 46.1 bits (109), Expect = 4e-06
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 96  TWQMPQGGADEGEDLINAALRELREETG--VTSAEFLAETPYWLTYDFP 142
            W +P G  +  E +  A +REL EET   +T  +          +D+P
Sbjct: 234 LWALPGGFLECDETIAQAIIRELFEETNINLTHEQLAIAKRCEKVFDYP 282

>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A* Length = 190

 Score = 45.1 bits (107), Expect = 4e-06
 Identities = 25/174 (14%), Positives = 45/174 (25%), Gaps = 48/174 (27%)

Query: 69  YRRNVGICLINSSKKKIF----AATRIHIPYTWQMPQGG-ADEGEDLINAALRELREETG 123
                   L N+ K ++     A ++   P  W     G    GE   +A +R  R E G
Sbjct: 31  LHLAFSSWLFNA-KGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELG 89

Query: 124 VTSAEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEIN--LLGD 181
           V      +  P    Y                                 E E+       
Sbjct: 90  VEITPPESIYPD-FRYRAT------DPSGIV------------------ENEVCPVFAAR 124

Query: 182 GSEKPEFN-----EWRWMFPEQVLERVRKPCGLIFRYFSPFCLAP-FMIYLKEL 229
            +   + N     +++W     VL  +           +P+  +P  ++     
Sbjct: 125 TTSALQINDDEVMDYQWCDLADVLHGIDA---------TPWAFSPWMVMQATNR 169

>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A Length = 171

 Score = 44.3 bits (105), Expect = 6e-06
 Identities = 30/172 (17%), Positives = 46/172 (26%), Gaps = 47/172 (27%)

Query: 69  YRRNVGICLINSSKKKIF----AATRIHIPYTWQMPQGGA-DEGEDLINAALRELREETG 123
             R V   L NS + +++    + ++   P    +  GGA   GE    A  RE REE  
Sbjct: 33  RVRVVNAFLRNS-QGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELN 91

Query: 124 VTSAEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGS 183
           V        +   L    P                        F+ T             
Sbjct: 92  VEIDA---LSWRPLASFSP------------------------FQTTLSSFMCVYELRSD 124

Query: 184 EKPEFN-----EWRWMFPEQVLERVRKPCGLIFRYFSPFCLAPFMIYLKELF 230
             P FN        W+ PE +L R+                      ++  +
Sbjct: 125 ATPIFNPNDISGGEWLTPEHLLARIAAG---------EAAKGDLAELVRRCY 167

>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua} Length = 187

 Score = 43.6 bits (103), Expect = 1e-05
 Identities = 15/30 (50%), Positives = 17/30 (56%)

Query: 96  TWQMPQGGADEGEDLINAALRELREETGVT 125
            W +P G  DE E    AA REL EET +T
Sbjct: 68  KWAVPGGFVDENESAEQAAERELEEETSLT 97

>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A Length = 205

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 12/30 (40%), Positives = 15/30 (50%)

Query: 96  TWQMPQGGADEGEDLINAALRELREETGVT 125
            W +P G AD G      A +E+ EETG  
Sbjct: 91  KWALPGGWADVGYTPTEVAAKEVFEETGYE 120

>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A Length = 209

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 8/65 (12%)

Query: 73  VGICLINSSKKKIF--------AATRIHIPYTWQMPQGGADEGEDLINAALRELREETGV 124
             +   +  + ++         A      P+  +M  G  +EGE + + A RE  EE G+
Sbjct: 60  AVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGL 119

Query: 125 TSAEF 129
                
Sbjct: 120 IVKRT 124

>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A* Length = 129

 Score = 41.4 bits (98), Expect = 3e-05
 Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 70  RRNVGICLINSSKKKIFAATR---IHIPYTWQMPQGGADEGEDLINAALRELREETG--V 124
           +  + + +I +   +IF   R    H+    + P G  + GE    A +REL+EE G   
Sbjct: 3   KLQIAVGIIRNENNEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITP 62

Query: 125 TSAEFLAETPY 135
                  +  Y
Sbjct: 63  QHFSLFEKLEY 73

>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae} Length = 158

 Score = 41.6 bits (98), Expect = 5e-05
 Identities = 18/95 (18%), Positives = 33/95 (34%), Gaps = 3/95 (3%)

Query: 51  SSSLSSFTALSTETPPDGYRRNVGICLINSSKKKIFAATR---IHIPYTWQMPQGGADEG 107
             +L + T      P       V  C +     ++    R     +   W+ P G  ++G
Sbjct: 9   MGTLEAQTQGPGSMPIKSSLLIVVACALLDQDNRVLLTQRPEGKSLAGLWEFPGGKVEQG 68

Query: 108 EDLINAALRELREETGVTSAEFLAETPYWLTYDFP 142
           E    + +REL EE GV           + ++ + 
Sbjct: 69  ETPEASLIRELEEELGVHVQADNLFPLTFASHGYE 103

>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718} Length = 189

 Score = 42.0 bits (99), Expect = 5e-05
 Identities = 15/69 (21%), Positives = 22/69 (31%), Gaps = 5/69 (7%)

Query: 75  ICLINSSKKKIFAATRIHIPY-TWQMPQGGADEGEDLINAALRELREETGVTSAEFLAET 133
            C+     K +     I      W +P G  +  E L+  A RE  EE        +   
Sbjct: 44  GCIPEWENKVLLCKRAIAPYRGKWTLPAGFMENNETLVQGAARETLEEANAR----VEIR 99

Query: 134 PYWLTYDFP 142
             +  Y  P
Sbjct: 100 ELYAVYSLP 108

>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367} Length = 161

 Score = 41.5 bits (98), Expect = 5e-05
 Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 73  VGICLI-NSSKKKIFAATRIHIPYT--WQMPQGGADEGEDLINAALRELREETGVT 125
           V + ++ +   +++    ++++P+      P G  + GE    AA+RE+ EETG+ 
Sbjct: 12  VTMVMVTDPETQRVLVEDKVNVPWKAGHSFPGGHVEVGEPCATAAIREVFEETGLR 67

>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis} Length = 206

 Score = 41.7 bits (98), Expect = 6e-05
 Identities = 8/30 (26%), Positives = 17/30 (56%)

Query: 96  TWQMPQGGADEGEDLINAALRELREETGVT 125
            W +P G  D  + + +  ++E++EE G+ 
Sbjct: 92  LWSLPGGWCDVDQSVKDNVVKEVKEEAGLD 121

>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans} Length = 188

 Score = 41.2 bits (97), Expect = 7e-05
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 97  WQMPQGGADEGEDLINAALRELREETGVT 125
           W  P G  + GE ++    RE  EETG+T
Sbjct: 28  WVAPGGKMEAGESILETVKREYWEETGIT 56

>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} Length = 144

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 16/76 (21%), Positives = 28/76 (36%), Gaps = 3/76 (3%)

Query: 70  RRNVGICLINSSKKKIFAATR---IHIPYTWQMPQGGADEGEDLINAALRELREETGVTS 126
              V    +     ++  A R     +   W+ P G  + GE    A +REL EE GV +
Sbjct: 7   ILLVTAAALIDPDGRVLLAQRPPGKSLAGLWEFPGGKLEPGETPEAALVRELAEELGVDT 66

Query: 127 AEFLAETPYWLTYDFP 142
                    + ++ + 
Sbjct: 67  RASCLAPLAFASHSYD 82

>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A* Length = 292

 Score = 41.4 bits (96), Expect = 1e-04
 Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 2/61 (3%)

Query: 74  GICLINSSKKKI--FAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLA 131
              +   S K I  F A +      W +P G  D GE +     RE  EE   +  +  A
Sbjct: 127 NKIMHPVSGKHILQFVAIKRKDCGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKTSA 186

Query: 132 E 132
           E
Sbjct: 187 E 187

>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6 Length = 273

 Score = 41.2 bits (96), Expect = 1e-04
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)

Query: 90  RIHIPY--TWQMPQGGADEGEDLINAALRELREETGVT 125
           R   P+  +W +P G  +  E   ++ LRE +EETGV 
Sbjct: 63  RKGHPFRNSWALPGGFVNRNESTEDSVLRETKEETGVV 100

>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1 Length = 155

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 4/57 (7%)

Query: 73  VGICLI-NSSKKKIFAATRIHIPYT---WQMPQGGADEGEDLINAALRELREETGVT 125
             ICLI +   +++    R         +  P G  +  E    + +RE+ EETG+T
Sbjct: 10  TNICLIEDLETQRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEETGLT 66

>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli} Length = 140

 Score = 39.5 bits (93), Expect = 2e-04
 Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 6/69 (8%)

Query: 72  NVGICLINSSKKKIFAATR---IHIPYTWQMPQGGADEGEDLINAALRELREETG--VTS 126
            V   +I     KI  A R         W+   G  +  E    A +RELREE G   T 
Sbjct: 10  EVVAAIIER-DGKILLAQRPAQSDQAGLWEFAGGKVEPDESQRQALVRELREELGIEATV 68

Query: 127 AEFLAETPY 135
            E++A    
Sbjct: 69  GEYVASHQR 77

>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A Length = 194

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 2/41 (4%)

Query: 100 PQGGADEGEDLINAALRELREETGVTSA--EFLAETPYWLT 138
           P G  D GE    AALRE +EE  +  A    L E     T
Sbjct: 69  PGGSLDAGETPTQAALREAQEEVALDPAAVTLLGELDDVFT 109

>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} Length = 140

 Score = 38.3 bits (90), Expect = 4e-04
 Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 8/71 (11%)

Query: 72  NVGICLINSSKKKIFAATR-----IHIPYTWQMPQGGADEGEDLINAALRELREETG--V 124
            V   +I    +K     R      +  + ++ P G  +EGE L  A  RE+ EE    +
Sbjct: 7   EVVAAVIRL-GEKYLCVQRGQTKFSYTSFRYEFPGGKVEEGESLQEALQREIMEEMDYVI 65

Query: 125 TSAEFLAETPY 135
              E L    +
Sbjct: 66  EVGEKLLTVHH 76

>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP} Length = 341

 Score = 39.2 bits (91), Expect = 6e-04
 Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 2/49 (4%)

Query: 96  TWQMPQGGADEGEDLINAALRELREETGVT--SAEFLAETPYWLTYDFP 142
              +P G   + E L+   LREL+EET +                +D P
Sbjct: 229 LIALPGGFIKQNETLVEGMLRELKEETRLKVPLPVLRGSIVDSHVFDAP 277

>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A* Length = 153

 Score = 38.0 bits (89), Expect = 8e-04
 Identities = 17/69 (24%), Positives = 22/69 (31%), Gaps = 6/69 (8%)

Query: 72  NVGICLINSSKKKIFAATR---IHIPYTWQMPQGGADEGEDLINAALRELREETG--VTS 126
            V    +     KI    R     +   W+ P G  + GE    A  REL EE G     
Sbjct: 23  PVVAGFLRK-DGKILVGQRPENNSLAGQWEFPGGKIENGETPEEALARELNEELGIEAEV 81

Query: 127 AEFLAETPY 135
            E      +
Sbjct: 82  GELKLACTH 90

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	239
1f3y_A	165	Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase	99.93
3u53_A	155	BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical];	99.85
2kdv_A	164	RNA pyrophosphohydrolase; nudix family, magnesium,	99.85
3i7u_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	99.85
1ktg_A	138	Diadenosine tetraphosphate hydrolase; nudix, AMP,	99.82
3son_A	149	Hypothetical nudix hydrolase; structural genomics,	99.8
3grn_A	153	MUTT related protein; structural genomics, hydrola	99.79
1vcd_A	126	NDX1; nudix protein, diadenosine polyphosphate, AP	99.78
1sjy_A	159	MUTT/nudix family protein; nudix fold, alpha-beta-	99.78
2o1c_A	150	DATP pyrophosphohydrolase; nudix NTP hydrolase NTP	99.78
3hhj_A	158	Mutator MUTT protein; niaid, ssgcid, decode, UW, S	99.78
2pbt_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	99.78
3fcm_A	197	Hydrolase, nudix family; protein structure initiat	99.77
3gg6_A	156	Nudix motif 18, nucleoside diphosphate-linked moie	99.77
3h95_A	199	Nucleoside diphosphate-linked moiety X motif 6; NU	99.77
3r03_A	144	Nudix hydrolase; structural genomics, PSI2, protei	99.77
2w4e_A	145	MUTT/nudix family protein; ADP-ribose pyrophosphat	99.77
2jvb_A	146	Protein PSU1, mRNA-decapping enzyme subunit 2; DCP	99.76
3gwy_A	140	Putative CTP pyrophosphohydrolase; structural geno	99.76
3cng_A	189	Nudix hydrolase; structural genomics, APC7497, PSI	99.76
4dyw_A	157	MUTT/nudix family protein; structural genomics, ni	99.75
3ees_A	153	Probable pyrophosphohydrolase; nudix, RNA pyrophos	99.75
3id9_A	171	MUTT/nudix family protein; hydrolase, protein stru	99.75
3oga_A	165	Nucleoside triphosphatase NUDI; salmonella enteric	99.75
3exq_A	161	Nudix family hydrolase; protein structure initiati	99.74
2yvp_A	182	NDX2, MUTT/nudix family protein; nudix protein, AD	99.74
2azw_A	148	MUTT/nudix family protein; MUTT/nudix ,enterococcu	99.74
2fkb_A	180	Putative nudix hydrolase YFCD; putative protein, M	99.74
1hzt_A	190	Isopentenyl diphosphate delta-isomerase; dimethyla	99.74
1rya_A	160	GDP-mannose mannosyl hydrolase; GDP-glucose, nudix	99.74
3f6a_A	159	Hydrolase, nudix family; protein structure initiat	99.74
3eds_A	153	MUTT/nudix family protein; MUT/nudix protein, prot	99.73
3shd_A	153	Phosphatase NUDJ; nudix fold, nudix motif, hydrola	99.73
3q93_A	176	7,8-dihydro-8-oxoguanine triphosphatase; structura	99.73
2b0v_A	153	Nudix hydrolase; structural genomics, PSI, protein	99.73
1vk6_A	269	NADH pyrophosphatase; 1790429, structural genomics	99.73
2rrk_A	140	ORF135, CTP pyrophosphohydrolase; NMR {Escherichia	99.72
2yyh_A	139	MUTT domain, 8-OXO-DGTPase domain; nudix family pr	99.72
1v8y_A	170	ADP-ribose pyrophosphatase; nudix motif, loop-heli	99.72
3i9x_A	187	MUTT/nudix family protein; structural genomics, hy	99.72
2fvv_A	194	Diphosphoinositol polyphosphate phosphohydrolase 1	99.71
1q27_A	171	Putative nudix hydrolase DR0079; radiation resista	99.71
1g0s_A	209	Hypothetical 23.7 kDa protein in ICC-TOLC intergen	99.7
3o6z_A	191	GDP-mannose pyrophosphatase NUDK; nudix, hydrolase	99.7
1k2e_A	156	Nudix homolog; nudix/MUTT-like fold, mixed alpha/b	99.7
3q1p_A	205	Phosphohydrolase (MUTT/nudix family protein); asym	99.7
1nqz_A	194	COA pyrophosphatase (MUTT/nudix family protein); D	99.69
3fsp_A	369	A/G-specific adenine glycosylase; protein-DNA comp	99.69
2a6t_A	271	SPAC19A8.12; alpha/beta/alpha, RNA binding protein	99.69
2pqv_A	154	MUTT/nudix family protein; structu genomics, PSI-2	99.68
2dsc_A	212	ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP	99.68
3fk9_A	188	Mutator MUTT protein; structural genomics, hydrola	99.67
1vhz_A	198	ADP compounds hydrolase NUDE; structural genomics;	99.67
3o8s_A	206	Nudix hydrolase, ADP-ribose pyrophosphatase; struc	99.67
3q91_A	218	Uridine diphosphate glucose pyrophosphatase; struc	99.67
2fb1_A	226	Conserved hypothetical protein; structural genomic	99.67
1x51_A	155	A/G-specific adenine DNA glycosylase; nudix domain	99.67
1mut_A	129	MUTT, nucleoside triphosphate pyrophosphohydrolase	99.67
2b06_A	155	MUTT/nudix family protein; structural genomics, P	99.66
1mk1_A	207	ADPR pyrophosphatase; nudix hydrolase, adprase, ad	99.66
3gz5_A	240	MUTT/nudix family protein; DNA binding protein, nu	99.65
3e57_A	211	Uncharacterized protein TM1382; structural genomic	99.65
2qjo_A	341	Bifunctional NMN adenylyltransferase/nudix hydrol;	99.65
3f13_A	163	Putative nudix hydrolase family member; structural	99.64
3fjy_A	364	Probable MUTT1 protein; dimer, protein structure i	99.64
2qjt_B	352	Nicotinamide-nucleotide adenylyltransferase; two i	99.63
2fml_A	273	MUTT/nudix family protein; structural genomics, PS	99.57
2dho_A	235	Isopentenyl-diphosphate delta-isomerase 1; alpha/b	99.54
2pny_A	246	Isopentenyl-diphosphate delta-isomerase 2; caroten	99.52
1u20_A	212	U8 snoRNA-binding protein X29; modified nudix hydr	99.49
1q33_A	292	Pyrophosphatase, ADP-ribose pyrophosphatase; nudix	99.46
3qsj_A	232	Nudix hydrolase; structural genomics, PSI-biology,	99.44
3dup_A	300	MUTT/nudix family protein; nudix superfamily hydro	99.4
2xsq_A	217	U8 snoRNA-decapping enzyme; hydrolase, mRNA decapp	99.32
3kvh_A	214	Protein syndesmos; NUDT16-like, NUDT16L1, nudix, R	99.0
3rh7_A	321	Hypothetical oxidoreductase; FMN-binding split bar	99.0
3bho_A	208	Cleavage and polyadenylation specificity factor su	98.98

>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A*

Probab=99.93  E-value=1.6e-24  Score=170.67  Aligned_cols=155  Identities=68%  Similarity=1.261  Sum_probs=118.0

Q ss_pred             CCCCCCCceeeEEEEEEeCCCCEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecC
Q 026407           62 TETPPDGYRRNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDF  141 (239)
Q Consensus        62 ~~~~~~~~~~~v~v~i~~~~~~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~  141 (239)
                      |...+..++..|++++++.++ ++||++|...+|.|++|||++|+|||+++||+||++||||+++..+......+..+.+
T Consensus         6 ~~~~~~~~~~~v~~~i~~~~~-~vLl~~r~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~   84 (165)
T 1f3y_A            6 MDSPPEGYRRNVGICLMNNDK-KIFAASRLDIPDAWQMPQGGIDEGEDPRNAAIRELREETGVTSAEVIAEVPYWLTYDF   84 (165)
T ss_dssp             CSSCCSSCCCEEEEEEECTTS-CEEEEEETTEEEEEECCEEECCTTCCHHHHHHHHHHHHHCCCSEEEEEECSSCCBCCC
T ss_pred             ccCCccceeeeEEEEEECCCC-cEEEEecCCCCCcEECCeeccCCCCCHHHHHHHHHHHhhCCChhhhhcccccceeeec
Confidence            444556688999999998887 8999999865699999999999999999999999999999998666555555566777


Q ss_pred             chhhhhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh---cchHH-HHHHHhhhh
Q 026407          142 PLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV---RKPCG-LIFRYFSPF  217 (239)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~---~~~~~-~~~~~l~~~  217 (239)
                      ++.....+...|...+.++...+|++.+......+...++..+.+|+.+++|++++++.++.   ..+.+ ++++.+..+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~~~~~l~~~  164 (165)
T 1f3y_A           85 PPKVREKLNIQWGSDWKGQAQKWFLFKFTGQDQEINLLGDGSEKPEFGEWSWVTPEQLIDLTVEFKKPVYKEVLSVFAPH  164 (165)
T ss_dssp             CHHHHHHHGGGSCSSCCSCBEEEEEEEECSCGGGCCCCCCSSSCCSEEEEEEECHHHHHHHBCGGGHHHHHHHHHHHGGG
T ss_pred             CccccccccccccccccCceEEEEEEEecCCcccccccCCCCCCChhheeEEecHHHHHHHhhhhhHHHHHHHHHHhhhc
Confidence            77655445555555556667788888887654444443333456689999999999999987   44666 777766654

>3u53_A BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical]; hydrolase; 2.71A {Homo sapiens} PDB: 1xsa_A 1xsb_A 1xsc_A*

Probab=99.85  E-value=1.4e-20  Score=147.59  Aligned_cols=130  Identities=18%  Similarity=0.274  Sum_probs=84.8

Q ss_pred             eEEEEEEe--------CCCCEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCch
Q 026407           72 NVGICLIN--------SSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPL  143 (239)
Q Consensus        72 ~v~v~i~~--------~~~~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~  143 (239)
                      +++++++.        .++.++||++|...++.|.||||++|+|||+.+||+||++||||+++..............+..
T Consensus         5 a~G~iifr~~~~~~~~n~~~e~LL~~r~~~~~~W~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~   84 (155)
T 3u53_A            5 ACGLIIFRRCLIPKVDNNAIEFLLLQASDGIHHWTPPKGHVEPGEDDLETALRETQEEAGIEAGQLTIIEGFKRELNYVA   84 (155)
T ss_dssp             EEEEEEEEECCCSSSSSCSEEEEEEEESSSSCCEECSEEECCSSCCHHHHHHHHHHHHHCCCGGGEEEEEEEEEEEEEEE
T ss_pred             EeEEEEEccccccceeCCCcEEEEEEecCCCCCEECCeeeccCCCCHHHHHHHHHHHHHCCccccceeeeeEeeeeecCC
Confidence            56777763        3444899999987779999999999999999999999999999999743322111111111111


Q ss_pred             hhhhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhcchHH-HHHHHhhhhhc
Q 026407          144 KVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRKPCG-LIFRYFSPFCL  219 (239)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~-~~~~~l~~~~~  219 (239)
                                  ........+|++........+      ..++|+.+++|++++|+.+++..+-. .++.....++.
T Consensus        85 ------------~~~~~~~~~~~~~~~~~~~~~------~~~~E~~~~~W~~~~ea~~~~~~~~~~~~L~~a~~~L~  143 (155)
T 3u53_A           85 ------------RNKPKTVIYWLAEVKDYDVEI------RLSHEHQAYRWLGLEEACQLAQFKEMKAALQEGHQFLC  143 (155)
T ss_dssp             ------------TTEEEEEEEEEEEESCTTCCC------CCCTTEEEEEEECHHHHHHHHCSHHHHHHHHHHHHHHH
T ss_pred             ------------CcceeEEEEEEEEEeccCCcc------CCCcceeEEEEeEHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence                        001122344454444332222      23458999999999999998755544 56666555554

>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A

Probab=99.85  E-value=3.6e-20  Score=146.98  Aligned_cols=145  Identities=36%  Similarity=0.658  Sum_probs=102.7

Q ss_pred             CCceeeEEEEEEeCCCCEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccc--eeeeccCceeeecCchh
Q 026407           67 DGYRRNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSA--EFLAETPYWLTYDFPLK  144 (239)
Q Consensus        67 ~~~~~~v~v~i~~~~~~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~--~~~~~~~~~~~~~~~~~  144 (239)
                      ..++.+|++++++.++ ++||++|.. +|.|.+|||++|+|||+++||.||++||||+++.  .+++....++.|.+++.
T Consensus         5 ~~~~~~v~~~i~~~~~-~vLl~~r~~-~~~w~~p~G~~e~gE~~~~aa~RE~~EE~G~~~~~~~~~~~~~~~~~~~~~~~   82 (164)
T 2kdv_A            5 DGYRPNVGIVICNRQG-QVMWARRFG-QHSWQFPQGGINPGESAEQAMYRELFEEVGLSRKDVRILASTRNWLRYKLPKR   82 (164)
T ss_dssp             SSEEEEEEEEEECTTS-EEEEEEETT-CCCEECCEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEECSSCEEEECCTT
T ss_pred             CCCCcEEEEEEEccCC-EEEEEEEcC-CCeEECCeeecCCCCCHHHHHHHHHHHHHCCCccceEEEEEecceeEEecCcc
Confidence            3578889999998877 999999876 5899999999999999999999999999999874  33444444555666553


Q ss_pred             hhhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh---cchHH-HHHHHhhhhh
Q 026407          145 VKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV---RKPCG-LIFRYFSPFC  218 (239)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~---~~~~~-~~~~~l~~~~  218 (239)
                      ..   .......+.++...+|++.+......+..+  ..+..|+.+++|++++++.+.+   .++++ .++..+...+
T Consensus        83 ~~---~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~--~~~~~E~~~~~W~~~~e~~~~l~~~~~~~~~~~l~~l~~~l  155 (164)
T 2kdv_A           83 LV---RWDTKPVCIGQKQKWFLLQLVSGDAEINMQ--TSSTPEFDGWRWVSYWYPVRQVVSFKRDVYRRVMKEFASVV  155 (164)
T ss_dssp             TC---CTTSSSCCCEEEEEEEEEEESSCGGGCCSC--SSSSCSEEEEEEEETTTGGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred             ee---eeccCcccccceeEEEEEEecCCccccccC--CCCCchhceEEEecHHHhhhhhhhhhHHHHHHHHHHHHHHH
Confidence            21   011122234456678888776554333332  2234589999999999987653   56777 7777776554

>3i7u_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, S genomics, NPPSFA, national project on protein structural AN functional analyses; HET: PGE PG4; 1.80A {Aquifex aeolicus} PDB: 3i7v_A*

Probab=99.85  E-value=2.1e-20  Score=143.74  Aligned_cols=113  Identities=20%  Similarity=0.307  Sum_probs=73.6

Q ss_pred             eeeEEEEEEeCCCCEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhhhc
Q 026407           70 RRNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQKL  149 (239)
Q Consensus        70 ~~~v~v~i~~~~~~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~  149 (239)
                      +.+++++|++. + +|||++|..  |.|.||||++|+|||+++||+||++||||+++..+.....  ..+.++..     
T Consensus         4 ~~aag~vv~~~-~-~vLL~~r~~--g~W~~PgG~ve~gEt~~~aa~RE~~EEtGl~~~~~~~l~~--~~~~~~~~-----   72 (134)
T 3i7u_A            4 EFSAGGVLFKD-G-EVLLIKTPS--NVWSFPKGNIEPGEKPEETAVREVWEETGVKGEILDYIGE--IHYWYTLK-----   72 (134)
T ss_dssp             EEEEEEEEEET-T-EEEEEECTT--SCEECCEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEE--EEEEEEET-----
T ss_pred             EEEEEEEEEEC-C-EEEEEEeCC--CcEECCeeEecCCCCHHHHHHHHHHHhcCceEEEeeeeee--eeEEecCC-----
Confidence            34666677764 5 899998865  8999999999999999999999999999998743221111  11111110     


Q ss_pred             ccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhcch
Q 026407          150 NRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRKP  206 (239)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~  206 (239)
                           +.......++|++.....  ..      ...+|+.+++|++++++.+++..+
T Consensus        73 -----~~~~~~~~~~f~~~~~~~--~~------~~~~E~~~~~W~~~~e~~~~l~~~  116 (134)
T 3i7u_A           73 -----GERIFKTVKYYLMKYKEG--EP------RPSWEVKDAKFFPIKEAKKLLKYK  116 (134)
T ss_dssp             -----TEEEEEEEEEEEEEEEEE--CC------CCCTTSSEEEEEEHHHHHHHBCSH
T ss_pred             -----CceEEEEEEEEEEEEcCC--cC------cCChhheEEEEEEHHHHhhhcCCh
Confidence                 000111234455444322  11      223588999999999999987433

>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A*

Probab=99.82  E-value=4.9e-19  Score=135.40  Aligned_cols=129  Identities=25%  Similarity=0.389  Sum_probs=84.8

Q ss_pred             eeeEEEEEEeCC--CCEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeec--cCceeeecCchhh
Q 026407           70 RRNVGICLINSS--KKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAE--TPYWLTYDFPLKV  145 (239)
Q Consensus        70 ~~~v~v~i~~~~--~~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~--~~~~~~~~~~~~~  145 (239)
                      +.++++++++.+  +.++||++|...+|.|.||||++|+|||+++||+||++||||+.+..+...  ......+.+++  
T Consensus         3 ~~~~~~vi~~~~~~~~~vLl~~r~~~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~--   80 (138)
T 1ktg_A            3 VKAAGLVIYRKLAGKIEFLLLQASYPPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTIHEDCHETLFYEAKG--   80 (138)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEESSTTCCEESSEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEEEEEEEEEEETT--
T ss_pred             eEEEEEEEEEecCCCcEEEEEEccCCCCcEeCCccccCCCCCHHHHHHHHHHHHHCCCccceEEeccccceEEEEeCC--
Confidence            356677777652  238999998765689999999999999999999999999999975333211  11122222211  


Q ss_pred             hhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhcchHH-HHHHHhhhhhc
Q 026407          146 KQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRKPCG-LIFRYFSPFCL  219 (239)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~-~~~~~l~~~~~  219 (239)
                                  ......+|++..... .      .....+|+.+++|++++++.++...+.. .++..+..+++
T Consensus        81 ------------~~~~~~~f~~~~~~~-~------~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~l~  136 (138)
T 1ktg_A           81 ------------KPKSVKYWLAKLNNP-D------DVQLSHEHQNWKWCELEDAIKIADYAEMGSLLRKFSAFLA  136 (138)
T ss_dssp             ------------EEEEEEEEEEEECSC-C------CCCCCTTEEEEEEECHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred             ------------CceEEEEEEEEecCC-c------ccCCCchhcEeEeccHHHHHHhhccchHHHHHHHHHHHhh
Confidence                        112344555554432 1      1123458899999999999998755544 66666666553

>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes}

Probab=99.80  E-value=1.3e-18  Score=135.10  Aligned_cols=135  Identities=16%  Similarity=0.157  Sum_probs=84.6

Q ss_pred             eeEEEEEE--eCCCCEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhhh
Q 026407           71 RNVGICLI--NSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQK  148 (239)
Q Consensus        71 ~~v~v~i~--~~~~~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~  148 (239)
                      .+|.++++  +.++.++||++|... |.|.||||++|+|||+++||+||++||||+++..........  +..+.     
T Consensus         6 ~~v~vvi~~~~~~~~~vLl~~r~~~-g~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~--~~~~~-----   77 (149)
T 3son_A            6 FQVLVIPFIKTEANYQFGVLHRTDA-DVWQFVAGGGEDEEAISETAKRESIEELNLDVDVKMYSLDSH--ASIPN-----   77 (149)
T ss_dssp             CEEEEEEEEECSSSEEEEEEEESSS-SCEECEEEECCTTCCHHHHHHHHHHHHHTCCSCCCEEEEEEE--EEEEG-----
T ss_pred             eEEEEEEEEecCCCeEEEEEEEcCC-CCEeCCccccCCCCCHHHHHHHHHHHHhCCCcccceEEEEee--ecccc-----
Confidence            34555554  233348999999874 999999999999999999999999999999874321111111  11111     


Q ss_pred             cccccC-CcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhcchHH-HHHHHhhhhhcCC
Q 026407          149 LNRRWG-TNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRKPCG-LIFRYFSPFCLAP  221 (239)
Q Consensus       149 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~-~~~~~l~~~~~~~  221 (239)
                        ..|. ........++|.+........+..      .+|+.+++|++++++.++...+.. .++..+..++...
T Consensus        78 --~~~~~~~~~~~~~~~f~~~~~~~~~~~~~------~~E~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~l~~~  144 (149)
T 3son_A           78 --FHFSFNKPYVVPEYCFAIDLTSCSYQVTL------SLEHSELRWVSYESAIQLLEWDSNKTALYELNERLKNN  144 (149)
T ss_dssp             --GGTCSSSCSEEEEEEEEEECTTTGGGCCC------CTTEEEEEEECHHHHHHHCCCHHHHHHHHHHHHHHHTT
T ss_pred             --eeeccCCceEeEEEEEEEEcCCCCCcccC------CCceeeEEEeCHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence              0010 000111233444444421222222      258899999999999998866666 7777777776654

>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei}

Probab=99.79  E-value=2.7e-18  Score=133.92  Aligned_cols=125  Identities=19%  Similarity=0.202  Sum_probs=83.9

Q ss_pred             CceeeEEEEEEeCCCCEEEEEEecCC----CCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCch
Q 026407           68 GYRRNVGICLINSSKKKIFAATRIHI----PYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPL  143 (239)
Q Consensus        68 ~~~~~v~v~i~~~~~~~vLl~~r~~~----~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~  143 (239)
                      .++..|++++++.++ ++||++|...    +|.|.||||++|.|||+++||+||++||||+++......  ....+.+++
T Consensus         6 ~~~~~v~~vi~~~~~-~vLL~~r~~~~~~~~g~w~~PgG~ve~gE~~~~aa~REl~EE~Gl~~~~~~~~--~~~~~~~~~   82 (153)
T 3grn_A            6 PYIISVYALIRNEKG-EFLLLRRSENSRTNAGKWDLPGGKVNPDESLKEGVAREVWEETGITMVPGDIA--GQVNFELTE   82 (153)
T ss_dssp             CEEEEEEEEEECTTC-CEEEEEECTTCSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCCCCCCSEE--EEEEEECSS
T ss_pred             ceEEEEEEEEEcCCC-cEEEEEEcCCCCCCCCeEECceeecCCCCCHHHHHHhhhhhhhCcEeecceEE--EEEEEecCC
Confidence            366778888888777 8999888753    399999999999999999999999999999987432211  111222222


Q ss_pred             hhhhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh-cchHH-HHHHHhhhh
Q 026407          144 KVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV-RKPCG-LIFRYFSPF  217 (239)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~-~~~~~-~~~~~l~~~  217 (239)
                                      .....++|.+.......      ...+|..+++|++++++.++. ..+.. .+++.+...
T Consensus        83 ----------------~~~~~~~~~~~~~~~~~------~~~~e~~~~~W~~~~el~~~~~~~~~~~~~l~~l~~~  136 (153)
T 3grn_A           83 ----------------KKVIAIVFDGGYVVADV------KLSYEHIEYSWVSLEKILGMETLPAYFRDFFERFDRE  136 (153)
T ss_dssp             ----------------CEEEEEEEEEEECCCCC------CCCTTEEEEEEECHHHHTTCSSSCHHHHHHHHHHHHH
T ss_pred             ----------------ceEEEEEEEEEecCCcE------ecCCCcceEEEEEHHHhhhcccchHHHHHHHHHHhcc
Confidence                            12223333333222211      123588899999999999986 55544 666655443

>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A*

Probab=99.78  E-value=4.5e-18  Score=128.01  Aligned_cols=120  Identities=20%  Similarity=0.247  Sum_probs=81.0

Q ss_pred             eeEEEEEEeCCCCEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhhhcc
Q 026407           71 RNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQKLN  150 (239)
Q Consensus        71 ~~v~v~i~~~~~~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (239)
                      .++++++++.++ ++||++|..  |.|.||||++++|||+++||.||++||||+++.......  ...+.++.       
T Consensus         3 ~~~~~vi~~~~~-~vLl~~r~~--g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~--~~~~~~~~-------   70 (126)
T 1vcd_A            3 LGAGGVVFNAKR-EVLLLRDRM--GFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPLY--PTRYVNPK-------   70 (126)
T ss_dssp             EEEEEEEECTTS-CEEEEECTT--SCEECCEECCCTTCCHHHHHHHHHHHHHCCEEEEEEEEE--EEEEECTT-------
T ss_pred             eEEEEEEEcCCC-EEEEEEECC--CCccCCcCcCCCCCCHHHHHHHHHHHhhCcEeeeccEEe--EEEEecCC-------
Confidence            467778888777 899999976  899999999999999999999999999999874332111  11222211       


Q ss_pred             cccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhcchHH-HHHHHhhhh
Q 026407          151 RRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRKPCG-LIFRYFSPF  217 (239)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~-~~~~~l~~~  217 (239)
                             ......+|.+.....  .      ...+.|+.+++|++++++.++...+.. .++..+..+
T Consensus        71 -------~~~~~~~~~~~~~~~--~------~~~~~e~~~~~w~~~~el~~~~~~~~~~~~l~~~~~~  123 (126)
T 1vcd_A           71 -------GVEREVHWFLMRGEG--A------PRLEEGMTGAGWFSPEEARALLAFPEDLGLLEVALER  123 (126)
T ss_dssp             -------SCEEEEEEEEEEEES--C------CCCCTTCCEEEEECHHHHHHHBCSHHHHHHHHHHHHH
T ss_pred             -------ceEEEEEEEEEEcCC--C------CCCCcceeeeEEcCHHHHHHhhcChhHHHHHHHHHHh
Confidence                   111233444433322  1      123458889999999999998755544 555554433

>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A*

Probab=99.78  E-value=2.8e-18  Score=134.18  Aligned_cols=114  Identities=21%  Similarity=0.230  Sum_probs=76.8

Q ss_pred             ceeeEEEEEEeCCCCEEEEEEecC------CCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCc
Q 026407           69 YRRNVGICLINSSKKKIFAATRIH------IPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFP  142 (239)
Q Consensus        69 ~~~~v~v~i~~~~~~~vLl~~r~~------~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~  142 (239)
                      .+..+++++++.++ ++||++|..      .+|.|+||||++|.|||+++||+||++||||+++..+....  ...+.++
T Consensus        12 ~~~~~~~vi~~~~~-~vLl~~r~~~~~~~~~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~l~--~~~~~~~   88 (159)
T 1sjy_A           12 ELRAAGVVLLNERG-DILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVRPVKFLG--AYLGRFP   88 (159)
T ss_dssp             CEEEEEEEEBCTTC-CEEEEEESCC----CCCCCEECSEEECCTTSCHHHHHHHHHHHHHSCCEEEEEEEE--EEEEECT
T ss_pred             EEEeEEEEEEeCCC-CEEEEEecccCcCCCCCCeEECCccccCCCCCHHHHHHHHHHHHHCccceeeEEEE--EEecccC
Confidence            45677778887776 899988875      34899999999999999999999999999999975332111  1122222


Q ss_pred             hhhhhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh
Q 026407          143 LKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV  203 (239)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~  203 (239)
                      +.             ......+|.+...... ....    ...+|+.++.|++++++.++.
T Consensus        89 ~~-------------~~~~~~~f~~~~~~~~-~~~~----~~~~E~~~~~W~~~~el~~~~  131 (159)
T 1sjy_A           89 DG-------------VLILRHVWLAEPEPGQ-TLAP----AFTDEIAEASFVSREDFAQLY  131 (159)
T ss_dssp             TS-------------CEEEEEEEEEEECSSC-CCCC----CCCSSEEEEEEECHHHHHHHH
T ss_pred             CC-------------ceEEEEEEEEEccCCC-cccc----CCCCceeEEEEecHHHHHHhh
Confidence            20             0112334444443221 0111    134588999999999999987

>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A

Probab=99.78  E-value=8.4e-18  Score=129.85  Aligned_cols=132  Identities=17%  Similarity=0.321  Sum_probs=81.5

Q ss_pred             eeEEEEEEeCCCCEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccce----eeeccCceeeecCchhhh
Q 026407           71 RNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAE----FLAETPYWLTYDFPLKVK  146 (239)
Q Consensus        71 ~~v~v~i~~~~~~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~----~~~~~~~~~~~~~~~~~~  146 (239)
                      .+|++++++.+++++||++|...+|.|.||||++|+|||+++||+||++||||+++..    +.+.. ....|.+...  
T Consensus        10 ~~v~~~i~~~~~~~vLl~~r~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~-~~~~~~~~~~--   86 (150)
T 2o1c_A           10 VSILVVIYAQDTKRVLMLQRRDDPDFWQSVTGSVEEGETAPQAAMREVKEEVTIDVVAEQLTLIDCQ-RTVEFEIFSH--   86 (150)
T ss_dssp             EEEEEEEEETTTCEEEEEECSSSTTCEESEEEECCTTCCHHHHHHHHHHHHHCCCHHHHTCCEEEEE-EEEEEECCGG--
T ss_pred             eEEEEEEEeCCCCEEEEEEecCCCCceECCccccCCCCCHHHHHHHHHHHHhCCCccccceeEEeee-ceeeeeeecc--
Confidence            4677788887533999999877579999999999999999999999999999998743    11111 0111110000  


Q ss_pred             hhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhcchHH-HHHHHhh
Q 026407          147 QKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRKPCG-LIFRYFS  215 (239)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~-~~~~~l~  215 (239)
                        ....+..........+|.+......  .      ....|+.+++|++++++.++...+.. .++..+.
T Consensus        87 --~~~~~~~~~~~~~~~~f~~~~~~~~--~------~~~~E~~~~~W~~~~el~~~~~~~~~~~~l~~~~  146 (150)
T 2o1c_A           87 --LRHRYAPGVTRNTESWFCLALPHER--Q------IVFTEHLAYKWLDAPAAAALTKSWSNRQAIEQFV  146 (150)
T ss_dssp             --GGGGBCTTCCEEEEEEEEEEESSCC--C------CCCSSSSCEEEEEHHHHHHHCSCHHHHHHHHHHT
T ss_pred             --cccccCCCCcceEEEEEEEEcCCCC--C------cChhHhhccEeecHHHHHhhhcCHHHHHHHHHHH
Confidence              0000100001122344444443221  1      11258889999999999998755544 5555544

>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae}

Probab=99.78  E-value=1.2e-18  Score=136.57  Aligned_cols=124  Identities=15%  Similarity=0.204  Sum_probs=80.8

Q ss_pred             ceeeEEEEEEeCCCCEEEEEEecCC---CCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhh
Q 026407           69 YRRNVGICLINSSKKKIFAATRIHI---PYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKV  145 (239)
Q Consensus        69 ~~~~v~v~i~~~~~~~vLl~~r~~~---~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~  145 (239)
                      ....+++++++.++ ++||++|...   +|.|.||||++|+||++++||+||+.||||+++............+.+++  
T Consensus        28 ~~~~~~~~i~~~~~-~vLL~~r~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~--  104 (158)
T 3hhj_A           28 LLIVVACALLDQDN-RVLLTQRPEGKSLAGLWEFPGGKVEQGETPEASLIRELEEELGVHVQADNLFPLTFASHGYET--  104 (158)
T ss_dssp             EEEEEEEEEBCTTS-EEEEEECCCTTSCCCCCBCCEEECCTTCCHHHHHHHHHHHHHCCBCCGGGCEEEEEEEEECSS--
T ss_pred             eEEEEEEEEEeCCC-EEEEEEeCCCCCCCCEEECCceeecCCCCHHHHHHHHHHHHhCcEeecceEEEEEEEeeccCC--
Confidence            44455666777776 9999998754   38999999999999999999999999999998743211111112233222  


Q ss_pred             hhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhcchHH-HHHHHhhh
Q 026407          146 KQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRKPCG-LIFRYFSP  216 (239)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~-~~~~~l~~  216 (239)
                                    .....++|.+......       ....|..+++|++++++.++...+.. .++..+..
T Consensus       105 --------------~~~~~~~~~~~~~~~~-------~~~~e~~~~~W~~~~el~~~~~~~~~~~il~~~~~  155 (158)
T 3hhj_A          105 --------------FHLLMPLYFCSHYKGV-------AQGREGQNLKWIFINDLDKYPMPEADKPLVQVLKN  155 (158)
T ss_dssp             --------------CEEEEEEEEESCCBSC-------CCCTTSCEEEEEEGGGGGGSCCCTTTHHHHHHHHH
T ss_pred             --------------cEEEEEEEEEEECCCc-------cCCccccceEEEcHHHHhhCCCCcchHHHHHHHHH
Confidence                          2333344444432221       12347789999999999987643333 55555543

>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124}

Probab=99.77  E-value=3.9e-18  Score=138.96  Aligned_cols=140  Identities=16%  Similarity=0.228  Sum_probs=82.3

Q ss_pred             CCceeeEEEEEEeCCCCEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceee-ecCchhh
Q 026407           67 DGYRRNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLT-YDFPLKV  145 (239)
Q Consensus        67 ~~~~~~v~v~i~~~~~~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~-~~~~~~~  145 (239)
                      ...+..+++++++.++.+|||++|.. .|.|.+|||++|+|||+++||+||++||||++...+......... +..+...
T Consensus        42 ~~~h~~~~~vv~~~~~~~vLL~~r~~-~g~w~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~  120 (197)
T 3fcm_A           42 TIAHLTSSAFAVNKERNKFLMIHHNI-YNSWAWTGGHSDNEKDQLKVAIKELKEETGVKNPTPLLDKAFALDVLTVNGHI  120 (197)
T ss_dssp             SSEEEEEEEEEECTTSCEEEEEEETT-TTEEECEEEECTTCCBHHHHHHHHHHHHHCCSSCEESCSSCSEEEEEEECCEE
T ss_pred             CCccEEEEEEEEECCCCEEEEEEecC-CCCEECCccccCCCCCHHHHHHHHHHHHHCCCcccccCCCceEEEEeeecCcc
Confidence            34667888888888766999998875 489999999999999999999999999999983222211111111 1111100


Q ss_pred             hhhcccccCCcccCce---eEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhcchHH-HHHHHhhhhhcC
Q 026407          146 KQKLNRRWGTNYKGQA---QKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRKPCG-LIFRYFSPFCLA  220 (239)
Q Consensus       146 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~-~~~~~l~~~~~~  220 (239)
                             ..+.+....   ...|++..... ..+.     .+.+|+.+++|++++++.++...+-. .++..+..++..
T Consensus       121 -------~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~E~~~~~W~~~~el~~~~~~~~~~~il~~~~~~l~~  186 (197)
T 3fcm_A          121 -------KRGKYVSSHLHLNLTYLIECSED-ETLM-----LKEDENSGVMWIPFNEISKYCSEPHMIPIYEKLINKLKT  186 (197)
T ss_dssp             -------ETTEEECCEEEEEEEEEEECCTT-SCCC-----CCC----CEEEEEGGGHHHHCCCGGGHHHHHHHHHHHHC
T ss_pred             -------ccCcccCCceeEEEEEEEEeCCC-cccC-----CCcccccceEEccHHHHHhhcCCHHHHHHHHHHHHHHHh
Confidence                   000000001   12333332221 1111     23458899999999999998844444 555555555553

>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens}

Probab=99.77  E-value=8.3e-19  Score=137.19  Aligned_cols=128  Identities=15%  Similarity=0.169  Sum_probs=85.9

Q ss_pred             ceeeEEEEEEeCCCCEEEEEEecCC--CCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhh
Q 026407           69 YRRNVGICLINSSKKKIFAATRIHI--PYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVK  146 (239)
Q Consensus        69 ~~~~v~v~i~~~~~~~vLl~~r~~~--~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~  146 (239)
                      ....+++++++.++ ++||++|...  +|.|.||||++|.|||+++||+||++||||+++.......    .+...    
T Consensus        19 ~~~~v~~~i~~~~~-~vLl~~r~~~~~~~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~----~~~~~----   89 (156)
T 3gg6_A           19 VCYVVLAVFLSEQD-EVLLIQEAKRECRGSWYLPAGRMEPGETIVEALQREVKEEAGLHCEPETLLS----VEERG----   89 (156)
T ss_dssp             CEEEEEEECBCTTS-EEEEEECCCTTSTTCEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEEEE----EEESS----
T ss_pred             eEEEEEEEEEeCCC-EEEEEEecCCCCCCEEECCeeeccCCCCHHHHHHHHHHHhhCceeEeeeEEE----EEcCC----
Confidence            44566667777777 9999998764  4899999999999999999999999999999874332111    11110    


Q ss_pred             hhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhcchHH-HHHHHhhhhhcC
Q 026407          147 QKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRKPCG-LIFRYFSPFCLA  220 (239)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~-~~~~~l~~~~~~  220 (239)
                                 .+....+|++..........    ..+++|+.+++|++++++.+....+.. .++.....++..
T Consensus        90 -----------~~~~~~~f~~~~~~~~~~~~----~~~~~E~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~~~~  149 (156)
T 3gg6_A           90 -----------PSWVRFVFLARPTGGILKTS----KEADAESLQAAWYPRTSLPTPLRAHDILHLVELAAQYRQQ  149 (156)
T ss_dssp             -----------TTEEEEEEEEEEEEECCCCG----GGCSSSCSEEEEEETTSCCSSBSCTHHHHHHHHHHHHHHH
T ss_pred             -----------CCEEEEEEEEEeeCCeeccC----CCCCcceeeeEEEcHHHCcccccchhHHHHHHHHHHHhhc
Confidence                       11223344544433211111    123458899999999999988766655 666666666543

>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens}

Probab=99.77  E-value=2.7e-18  Score=140.21  Aligned_cols=116  Identities=21%  Similarity=0.267  Sum_probs=75.4

Q ss_pred             ceeeEEEEEEeCCCCEEEEEEecCC-CCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhh
Q 026407           69 YRRNVGICLINSSKKKIFAATRIHI-PYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQ  147 (239)
Q Consensus        69 ~~~~v~v~i~~~~~~~vLl~~r~~~-~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~  147 (239)
                      .+..|++++++.++.+|||++|... +|.|.||||++|+|||+++||+||++||||+++... ........+.++..   
T Consensus        25 ~~v~v~~~v~~~~~~~vLL~~r~~~~~g~w~lPGG~ve~gEs~~~aA~REl~EEtGl~~~~~-~l~~~~~~~~~~~~---  100 (199)
T 3h95_A           25 HQVGVAGAVFDESTRKILVVQDRNKLKNMWKFPGGLSEPEEDIGDTAVREVFEETGIKSEFR-SVLSIRQQHTNPGA---  100 (199)
T ss_dssp             -CCEEEEEEEETTTTEEEEEEESSSSTTSBBCCEEECCTTCCHHHHHHHHHHHHHCCCEEEE-EEEEEEECC--------
T ss_pred             ccceEEEEEEeCCCCEEEEEEEcCCCCCCEECCccccCCCCCHHHHHHHHHHHHhCCccccc-eEEEEEeeecCCCC---
Confidence            4557777777776559999888653 499999999999999999999999999999997421 11111111222211   


Q ss_pred             hcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh
Q 026407          148 KLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV  203 (239)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~  203 (239)
                                ......++++..........     .+++|+.+++|++++++.++.
T Consensus       101 ----------~~~~~~~~~~~~~~~~~~~~-----~~~~E~~~~~W~~~~el~~~~  141 (199)
T 3h95_A          101 ----------FGKSDMYIICRLKPYSFTIN-----FCQEECLRCEWMDLNDLAKTE  141 (199)
T ss_dssp             --------------CEEEEEEEEESCCCCC-----CCTTTEEEEEEEEHHHHHHCS
T ss_pred             ----------ceeEEEEEEEEEcCCCcccC-----CCccceeeeEEEeHHHHhhhh
Confidence                      11223455555543322222     235589999999999999876

>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} SCOP: d.113.1.0

Probab=99.77  E-value=2.7e-18  Score=132.13  Aligned_cols=123  Identities=19%  Similarity=0.234  Sum_probs=81.9

Q ss_pred             ceeeEEEEEEeCCCCEEEEEEecCC---CCcEEcCceecCCCCCHHHHHHHHHHHHhCCcccee--eeccCceeeecCch
Q 026407           69 YRRNVGICLINSSKKKIFAATRIHI---PYTWQMPQGGADEGEDLINAALRELREETGVTSAEF--LAETPYWLTYDFPL  143 (239)
Q Consensus        69 ~~~~v~v~i~~~~~~~vLl~~r~~~---~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~--~~~~~~~~~~~~~~  143 (239)
                      ....+++++++.++ ++||++|...   +|.|.||||++|.||++.+||+||++||||+++...  ...  ....+.++ 
T Consensus         7 ~~~~~~~vi~~~~~-~vLl~~r~~~~~~~g~w~lPgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~--~~~~~~~~-   82 (144)
T 3r03_A            7 ILLVTAAALIDPDG-RVLLAQRPPGKSLAGLWEFPGGKLEPGETPEAALVRELAEELGVDTRASCLAPL--AFASHSYD-   82 (144)
T ss_dssp             EEEEEEEEEBCTTS-CEEEEECCTTSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCBCCGGGCEEE--EEEEEECS-
T ss_pred             eeEEEEEEEEcCCC-EEEEEEeCCCCCCCCcEECCCcEecCCCCHHHHHHHHHHHHhCceeeccceEEE--EeeeccCC-
Confidence            44556667777776 8999998754   389999999999999999999999999999987433  211  12223321 


Q ss_pred             hhhhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhcchHH-HHHHHhhhh
Q 026407          144 KVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRKPCG-LIFRYFSPF  217 (239)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~-~~~~~l~~~  217 (239)
                                     +.....++|.+......       ....|..+++|++++++.++...+.. .+++.+.+.
T Consensus        83 ---------------~~~~~~~~~~~~~~~~~-------~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~  135 (144)
T 3r03_A           83 ---------------TFHLLMPLYACRSWRGR-------ATAREGQTLAWVRAERLREYPMPPADLPLIPILQDW  135 (144)
T ss_dssp             ---------------SSEEEEEEEEECCCBSC-------CCCCSSCEEEEECGGGGGGSCCCTTTTTHHHHHHHH
T ss_pred             ---------------CeEEEEEEEEEEecCCc-------cCCCCcceEEEEeHHHhccCCCCcchHHHHHHHhCc
Confidence                           22333444444432221       12347789999999999997744434 555555443

>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans}

Probab=99.77  E-value=3.8e-18  Score=132.31  Aligned_cols=111  Identities=23%  Similarity=0.204  Sum_probs=70.4

Q ss_pred             eeeEEEEEEeCCCCEEEEEEecCC---CCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhh
Q 026407           70 RRNVGICLINSSKKKIFAATRIHI---PYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVK  146 (239)
Q Consensus        70 ~~~v~v~i~~~~~~~vLl~~r~~~---~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~  146 (239)
                      +.+|++++++.++ ++||+++...   ++.|+||||++|+|||+++||+||++||||+++..+......   +..+.   
T Consensus         5 ~~~v~vi~~~~~~-~vLLv~~~r~~~~~~~w~~PgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~l~~~---~~~~~---   77 (145)
T 2w4e_A            5 PRAVFILPVTAQG-EAVLIRQFRYPLRATITEIVAGGVEKGEDLGAAAARELLEEVGGAASEWVPLPGF---YPQPS---   77 (145)
T ss_dssp             CEEEEEEEEETTS-EEEEEEEEETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHCEECSEEEECCCB---BSCTT---
T ss_pred             CCEEEEEEEcCCC-EEEEEEEEecCCCCCEEEeCCccCCCCCCHHHHHHHHHHHhhCCccCeEEEEecC---cCCCC---
Confidence            4578888888887 7877554322   258999999999999999999999999999987544322221   11111   


Q ss_pred             hhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh
Q 026407          147 QKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV  203 (239)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~  203 (239)
                                ......++|++..... ...     ..+++|+.+++|++++++.++.
T Consensus        78 ----------~~~~~~~~f~~~~~~~-~~~-----~~~~~E~~~~~w~~~~el~~~~  118 (145)
T 2w4e_A           78 ----------ISGVVFYPLLALGVTL-GAA-----QLEDTETIERVVLPLAEVYRML  118 (145)
T ss_dssp             ----------TCCCEEEEEEEEEEEE-C-------------CEEEEEEEHHHHHHHH
T ss_pred             ----------ccCceEEEEEEEeccc-CCC-----CCCCCCeEEEEEEeHHHHHHHH
Confidence                      1122334444432111 111     1234588899999999999987

>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae}

Probab=99.76  E-value=6e-18  Score=130.73  Aligned_cols=111  Identities=18%  Similarity=0.379  Sum_probs=74.3

Q ss_pred             eeEEEEEEeCCCCEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhhhcc
Q 026407           71 RNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQKLN  150 (239)
Q Consensus        71 ~~v~v~i~~~~~~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (239)
                      +.+++++++.++.++||++|.. +|.|.||||++++|||+++||+||++||||+++..+..... +.....         
T Consensus         5 ~~~~~~i~~~~~~~vLl~~r~~-~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~-~~~~~~---------   73 (146)
T 2jvb_A            5 PVRGAAIFNENLSKILLVQGTE-SDSWSFPRGKISKDENDIDCCIREVKEEIGFDLTDYIDDNQ-FIERNI---------   73 (146)
T ss_dssp             CCEEEEEBCTTSSEEEEECCSS-SSCCBCCEECCCSSSCHHHHHHHHHHHHTSCCCSSSSCSSC-EEEEEE---------
T ss_pred             EEEEEEEEeCCCCEEEEEEEcC-CCcEECCcccCCCCCCHHHHHHHHHHHHHCCCchHhccccc-cccccc---------
Confidence            4566777777634999999875 48999999999999999999999999999998764432221 111111         


Q ss_pred             cccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh
Q 026407          151 RRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV  203 (239)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~  203 (239)
                             .+...++|++.......    .......+|+.++.|++++++.++.
T Consensus        74 -------~~~~~~~~~~~~~~~~~----~~~~~~~~E~~~~~W~~~~el~~~~  115 (146)
T 2jvb_A           74 -------QGKNYKIFLISGVSEVF----NFKPQVRNEIDKIEWFDFKKISKTM  115 (146)
T ss_dssp             -------TTEEEEEEEECCCCSSS----CCCCCCSSSCCCEEEEEHHHHHTGG
T ss_pred             -------CCceEEEEEEEeccccc----cCCcCCcchhheeEEeEHHHHHhhh
Confidence                   11222333332222111    1112235688999999999999977

>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} SCOP: d.113.1.0

Probab=99.76  E-value=9.5e-18  Score=128.92  Aligned_cols=119  Identities=19%  Similarity=0.186  Sum_probs=75.0

Q ss_pred             eeeEEEEEEeCCCCEEEEEEecC-----CCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchh
Q 026407           70 RRNVGICLINSSKKKIFAATRIH-----IPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLK  144 (239)
Q Consensus        70 ~~~v~v~i~~~~~~~vLl~~r~~-----~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~  144 (239)
                      ...+++++.+ ++ ++||++|..     .+|.|.||||++|+||++++||.||++||||+++.......  ...+.+++ 
T Consensus         6 ~~~v~~vi~~-~~-~vLL~~r~~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EE~Gl~~~~~~~~~--~~~~~~~~-   80 (140)
T 3gwy_A            6 IEVVAAVIRL-GE-KYLCVQRGQTKFSYTSFRYEFPGGKVEEGESLQEALQREIMEEMDYVIEVGEKLL--TVHHTYPD-   80 (140)
T ss_dssp             EEEEEEEEEE-TT-EEEEEEC---------CCEECSEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEE--EEECCCSS-
T ss_pred             EEEEEEEEEe-CC-EEEEEEecCCCCCCCCCeEECCCccCCCCCCHHHHHHHHHHHhhCcEEEeceEEE--EEEEEeCC-
Confidence            3455556666 55 999999875     34899999999999999999999999999999874332111  11222221 


Q ss_pred             hhhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhcchHH-HHHHHhh
Q 026407          145 VKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRKPCG-LIFRYFS  215 (239)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~-~~~~~l~  215 (239)
                                   ......+|.+.....  ..       ...|..+++|++++++.++...+.. .+++.+.
T Consensus        81 -------------~~~~~~~f~~~~~~~--~~-------~~~E~~~~~W~~~~el~~~~~~~~~~~il~~~~  130 (140)
T 3gwy_A           81 -------------FEITMHAFLCHPVGQ--RY-------VLKEHIAAQWLSTREMAILDWAEADKPIVRKIS  130 (140)
T ss_dssp             -------------CCEEEEEEEEEECCS--CC-------CCCSSCEEEEECHHHHTTSCBCGGGHHHHHHHH
T ss_pred             -------------ceEEEEEEEEEecCC--cc-------cccccceeEeccHHHHhhCCCCcccHHHHHHHH
Confidence                         111233444433322  11       1247889999999999987644433 4554443

>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}

Probab=99.76  E-value=1.1e-17  Score=135.49  Aligned_cols=131  Identities=19%  Similarity=0.136  Sum_probs=81.9

Q ss_pred             eeeEEEEEEeCCCCEEEEEEecCC--CCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhh
Q 026407           70 RRNVGICLINSSKKKIFAATRIHI--PYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQ  147 (239)
Q Consensus        70 ~~~v~v~i~~~~~~~vLl~~r~~~--~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~  147 (239)
                      +.+|++++++ ++ +|||++|...  .|.|+||||++|+|||+++||+||++||||+++.... ..   ..+.+++    
T Consensus        40 ~~~v~~ii~~-~~-~vLL~~r~~~~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~-~~---~~~~~~~----  109 (189)
T 3cng_A           40 KVIVGCIPEW-EN-KVLLCKRAIAPYRGKWTLPAGFMENNETLVQGAARETLEEANARVEIRE-LY---AVYSLPH----  109 (189)
T ss_dssp             EEEEEEEEEE-TT-EEEEEEESSSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCCEEEEE-EE---EEEEEGG----
T ss_pred             ceEEEEEEEe-CC-EEEEEEccCCCCCCeEECceeeccCCCCHHHHHHHHHHHHHCCccccce-eE---EEEecCC----
Confidence            3466666666 55 9999998753  4899999999999999999999999999999874221 11   1122222    


Q ss_pred             hcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHH-HhhcchHH--HHHHHhhhhhcCCCcc
Q 026407          148 KLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVL-ERVRKPCG--LIFRYFSPFCLAPFMI  224 (239)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~-~~~~~~~~--~~~~~l~~~~~~~~~~  224 (239)
                                ......+|.+.....  ..      ...+|..+++|++++++. ..+..+..  .+...+.......+..
T Consensus       110 ----------~~~~~~~f~~~~~~~--~~------~~~~E~~~~~W~~~~el~~~~l~~~~~~~~l~~~l~~~~~~~~~~  171 (189)
T 3cng_A          110 ----------ISQVYMLFRAKLLDL--DF------FPGIESLEVRLFGEQEIPWNDIAFRVIHDPLKRYMEERHHGQPAF  171 (189)
T ss_dssp             ----------GTEEEEEEEEEECCS--CC------CCCTTEEEEEEECTTTCCGGGBSCHHHHHHHHHHHHHHHHSSCCC
T ss_pred             ----------CcEEEEEEEEEeCCC--cc------CCCccceeEEEECHHHcCcccccChHHHHHHHHHHHhccCCCcce
Confidence                      112233444443322  11      124588899999999998 22233333  3333333343456666


Q ss_pred             cccc
Q 026407          225 YLKE  228 (239)
Q Consensus       225 ~l~~  228 (239)
                      |+.+
T Consensus       172 y~g~  175 (189)
T 3cng_A          172 HLGI  175 (189)
T ss_dssp             EEEE
T ss_pred             Eeee
Confidence            6654

>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei}

Probab=99.75  E-value=1e-17  Score=131.53  Aligned_cols=125  Identities=15%  Similarity=0.168  Sum_probs=78.9

Q ss_pred             CceeeEEEEEEeCCCCEEEEEEecCC--CCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhh
Q 026407           68 GYRRNVGICLINSSKKKIFAATRIHI--PYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKV  145 (239)
Q Consensus        68 ~~~~~v~v~i~~~~~~~vLl~~r~~~--~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~  145 (239)
                      ..+..|++++++ ++ +|||++|...  +|.|.||||++|.|||+++||+||++||||+++.......  ...+.+++  
T Consensus        27 ~~~~~v~~vi~~-~~-~vLL~~r~~~~~~~~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~--~~~~~~~~--  100 (157)
T 4dyw_A           27 QPRVGCGAAIVR-DG-RILLIKRKRAPEAGCWGLPGGKVDWLEPVERAVCREIEEELGIALERATLLC--VVDHIDAA--  100 (157)
T ss_dssp             CCEEEEEEEEEE-TT-EEEEEEECSSSSTTCEECCEEECCTTCCHHHHHHHHHHHHHSCEEESCEEEE--EEEEEETT--
T ss_pred             CceeEEEEEEEE-CC-EEEEEEecCCCCCCEEECCcccCCCCCCHHHHHHHHHHHHHCcccccCcEEE--EEEeeccC--
Confidence            356677777777 45 9999998753  4999999999999999999999999999999874332111  11111111  


Q ss_pred             hhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhcchHH-HHHHHhh
Q 026407          146 KQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRKPCG-LIFRYFS  215 (239)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~-~~~~~l~  215 (239)
                                  .+.....++|.+.......    ...+.+|+.+++|++++++.+.+ .+.. .+++.+.
T Consensus       101 ------------~~~~~~~~~f~~~~~~~~~----~~~~~~E~~~~~W~~~~el~~~l-~~~~~~~l~~l~  154 (157)
T 4dyw_A          101 ------------NGEHWVAPVYLAHAFSGEP----RVVEPDRHEALGWFALDDLPQPL-THATRIALEQVT  154 (157)
T ss_dssp             ------------TTEEEEEEEEEESEEESCC----CCSCTTTEEEEEEEETTSCCSSB-CHHHHHHHHHHC
T ss_pred             ------------CCcEEEEEEEEEEEcCCCc----ccCCCCcEeEEEEECHHHccccc-CHHHHHHHHHHH
Confidence                        0111222333333221111    11234588999999999998843 3333 5555543

>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A*

Probab=99.75  E-value=1.2e-17  Score=129.46  Aligned_cols=123  Identities=19%  Similarity=0.201  Sum_probs=81.2

Q ss_pred             eeEEEEEEeCCCCEEEEEEecCC---CCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhh
Q 026407           71 RNVGICLINSSKKKIFAATRIHI---PYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQ  147 (239)
Q Consensus        71 ~~v~v~i~~~~~~~vLl~~r~~~---~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~  147 (239)
                      ..+++++++.++ ++||++|...   +|.|.||||++|.||++++||.||+.||||+++.......  ...+.+++    
T Consensus        22 ~~~~~~i~~~~~-~vLl~~r~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~--~~~~~~~~----   94 (153)
T 3ees_A           22 IPVVAGFLRKDG-KILVGQRPENNSLAGQWEFPGGKIENGETPEEALARELNEELGIEAEVGELKL--ACTHSYGD----   94 (153)
T ss_dssp             EEEEEEEEEETT-EEEEEECCTTSTTTTCEECSEEECCTTCCHHHHHHHHHHHHHSCEEECCCEEE--EEEEEETT----
T ss_pred             EEEEEEEEEECC-EEEEEEeCCCCCCCCeEECCceeeCCCCCHHHHHHHHHHHHHCCccccCceEE--EEEEecCC----
Confidence            355556666666 9999998764   3999999999999999999999999999999874332111  12233222    


Q ss_pred             hcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhcchHH-HHHHHhhhhhc
Q 026407          148 KLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRKPCG-LIFRYFSPFCL  219 (239)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~-~~~~~l~~~~~  219 (239)
                                  .....++|.+......       ....|..++.|++++++.++...+.. .+++.+..++.
T Consensus        95 ------------~~~~~~~~~~~~~~~~-------~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~~~  148 (153)
T 3ees_A           95 ------------VGILILFYEILYWKGE-------PRAKHHMMLEWIHPEELKHRNIPEANRKILHKIYKALG  148 (153)
T ss_dssp             ------------EEEEEEEEEECEEESC-------CCCSSSSEEEEECGGGGGGSCCCHHHHTTHHHHHHHTT
T ss_pred             ------------CeEEEEEEEEEECCCC-------cCCCccceEEEecHHHhhhCCCCcchHHHHHHHHHhhc
Confidence                        2223334444322111       12347889999999999987644444 55665555543

>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str}

Probab=99.75  E-value=1.2e-17  Score=132.52  Aligned_cols=118  Identities=20%  Similarity=0.210  Sum_probs=72.9

Q ss_pred             ceeeEEEEEEeCCCCEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhhh
Q 026407           69 YRRNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQK  148 (239)
Q Consensus        69 ~~~~v~v~i~~~~~~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~  148 (239)
                      ++..|++++++. + ++||++|...+|.|+||||++|+|||+++||+||++||||+++.... .. ....+....     
T Consensus        22 ~~~~v~~ii~~~-~-~vLL~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~-~~-~~~~~~~~~-----   92 (171)
T 3id9_A           22 MQVRVTGILIED-E-KVLLVKQKVANRDWSLPGGRVENGETLEEAMIREMREETGLEVKIKK-LL-YVCDKPDAS-----   92 (171)
T ss_dssp             CEEEEEEEEEET-T-EEEEEECSSTTCCEECCEEECCTTCCHHHHHHHHHHHHHCCCEEEEE-EE-EEEEETTSS-----
T ss_pred             eEEEEEEEEEEC-C-EEEEEEEECCCCeEECCCccCCCCCCHHHHHHHHHHHHHCCccccce-EE-EEEcccCCC-----
Confidence            556677777764 5 99999998767999999999999999999999999999999973221 11 111111111     


Q ss_pred             cccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhcch
Q 026407          149 LNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRKP  206 (239)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~  206 (239)
                               ......+|.+.....  .........+.+|+.+++|++++++.++...+
T Consensus        93 ---------~~~~~~~~~~~~~~~--~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~  139 (171)
T 3id9_A           93 ---------PSLLHITFLLERIEG--EITLPSNEFDHNPIHDVQMVPINELSYYGFSE  139 (171)
T ss_dssp             ---------SCEEEEEEEEEEC---------------CCCCCEEEEETGGGGGGTCCT
T ss_pred             ---------CcEEEEEEEEEEcCC--cccCCccCCCcCeeeeEEEEeHHHHhhCCCCH
Confidence                     111222333333222  22221112244588999999999999886333

>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A

Probab=99.75  E-value=2.2e-17  Score=130.27  Aligned_cols=119  Identities=19%  Similarity=0.253  Sum_probs=72.4

Q ss_pred             eeeEEEEEEeCCCCEEEEEEecCC----CCcEEcCceecCCCCCHHHHHHHHHHHHhCCcccee--eecc--CceeeecC
Q 026407           70 RRNVGICLINSSKKKIFAATRIHI----PYTWQMPQGGADEGEDLINAALRELREETGVTSAEF--LAET--PYWLTYDF  141 (239)
Q Consensus        70 ~~~v~v~i~~~~~~~vLl~~r~~~----~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~--~~~~--~~~~~~~~  141 (239)
                      +..+++++++.++ ++||++|...    +|.|+||||++|+||++++||+||++||||+++...  ....  .....+.+
T Consensus        27 ~~~~~~~ii~~~~-~vLL~~r~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~  105 (165)
T 3oga_A           27 QRTIVCPLIQNDG-CYLLCKMADNRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLILSDITPWTFRDDIRIKTY  105 (165)
T ss_dssp             EEEEEEEEEEETT-EEEEEEECC------CCEECCCEECCTTCCHHHHHHHHHHHHHCSSCCEEEEEEEEEEEEEEEEEC
T ss_pred             eEEEEEEEEeCCC-EEEEEEecCCCCCCCCeEECCccccCCCCCHHHHHHHHHHHHhCCCccccceeeeeeecceeeEec
Confidence            3445555666666 9999988743    389999999999999999999999999999987322  1110  00112333


Q ss_pred             chhhhhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhcch
Q 026407          142 PLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRKP  206 (239)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~  206 (239)
                      ++..           .......++++........      ....+|+.+++|++++++.++...+
T Consensus       106 ~~~~-----------~~~~~~~~~~~~~~~~~~~------~~~~~E~~~~~W~~~~el~~~~~~~  153 (165)
T 3oga_A          106 ADGR-----------QEEIYMIYLIFDCVSANRD------ICINDEFQDYAWVKPEELALYDLNV  153 (165)
T ss_dssp             --CC-----------EEEEEEEEEEEEEEESCCC------CCCCTTEEEEEEECGGGGGGSCBCH
T ss_pred             CCCC-----------ceeEEEEEEEEEeeccCCC------ccCCchheeeEEccHHHHhhCCCCH
Confidence            3311           0001122233333322211      1223588999999999999876444

>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367}

Probab=99.74  E-value=8.9e-18  Score=132.44  Aligned_cols=125  Identities=13%  Similarity=0.193  Sum_probs=80.9

Q ss_pred             ceeeEEEEEEeCCCCEEEEEEecCCC--CcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhh
Q 026407           69 YRRNVGICLINSSKKKIFAATRIHIP--YTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVK  146 (239)
Q Consensus        69 ~~~~v~v~i~~~~~~~vLl~~r~~~~--~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~  146 (239)
                      .+.++.+++++.++.+|||++|...+  |.|+||||++|+|||+++||+||++||||+++..+....  ...+.++.   
T Consensus         9 ~~~~v~~vi~~~~~~~vLL~~r~~~~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~--~~~~~~~~---   83 (161)
T 3exq_A            9 VELVTMVMVTDPETQRVLVEDKVNVPWKAGHSFPGGHVEVGEPCATAAIREVFEETGLRLSGVTFCG--TCEWFDDD---   83 (161)
T ss_dssp             EEEEEEEEEBCTTTCCEEEECCCCCTTTCSBBCCCCBCCTTSCHHHHHHHHHHHHHCCEESCCEEEE--EEEEECSS---
T ss_pred             ceEEEEEEEEeCCCCEEEEEEccCCCCCCCEEccceecCCCCCHHHHHHHHHHHhhCcEecCCcEEE--EEecccCC---
Confidence            45566677777763489999987543  789999999999999999999999999999874332111  11222211   


Q ss_pred             hhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhcchHH-HHHHHhhh
Q 026407          147 QKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRKPCG-LIFRYFSP  216 (239)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~-~~~~~l~~  216 (239)
                                 .+.....+++.+.......       ...|..+++|++++++.++...+.. +++..+..
T Consensus        84 -----------~~~~~~~~~~~~~~~~~~~-------~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~  136 (161)
T 3exq_A           84 -----------RQHRKLGLLYRASNFTGTL-------KASAEGQLSWLPITALTRENSAASLPEFLQVFTG  136 (161)
T ss_dssp             -----------CSSEEEEEEEEECCEESCC-------CGGGTTTEEEECGGGCCTTTBCTTHHHHHHHHTT
T ss_pred             -----------CCeEEEEEEEEEeccCCcc-------CCCccceEEEeeHHHhhhCccChHHHHHHHHHhh
Confidence                       1123334455444332221       1336778999999999987644433 55554433

>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A*

Probab=99.74  E-value=1e-17  Score=134.57  Aligned_cols=111  Identities=20%  Similarity=0.193  Sum_probs=74.2

Q ss_pred             eeEEEEEEeCCCCEEEEEEecCC---CCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhh
Q 026407           71 RNVGICLINSSKKKIFAATRIHI---PYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQ  147 (239)
Q Consensus        71 ~~v~v~i~~~~~~~vLl~~r~~~---~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~  147 (239)
                      .+|++++++.++ ++||++|...   +|.|+||||++|+|||+++||+||++||||+++..+.......   ..+     
T Consensus        42 ~~v~v~i~~~~~-~vLL~~r~~~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~---~~~-----  112 (182)
T 2yvp_A           42 AASFVLPVTERG-TALLVRQYRHPTGKFLLEVPAGKVDEGETPEAAARRELREEVGAEAETLIPLPSFH---PQP-----  112 (182)
T ss_dssp             EEEEEEEBCTTS-EEEEEEEEEGGGTEEEEECCEEECCTTCCHHHHHHHHHHHHHCEECSCEEECCCBC---SCT-----
T ss_pred             CEEEEEEEcCCC-EEEEEEeccCCCCCcEEEeccccCCCCcCHHHHHHHHHHHHhCCCcccEEEEEEEe---CCC-----
Confidence            577778888877 8999887642   3899999999999999999999999999999875443222210   000     


Q ss_pred             hcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh
Q 026407          148 KLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV  203 (239)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~  203 (239)
                              .......++|.+.........     ..+.+|+.++.|++++++.++.
T Consensus       113 --------~~~~~~~~~f~~~~~~~~~~~-----~~~~~E~~~~~W~~~~el~~~~  155 (182)
T 2yvp_A          113 --------SFTAVVFHPFLALKARVVTPP-----TLEEGELLESLELPLTEVYALL  155 (182)
T ss_dssp             --------TTBCCEEEEEEECSCEECSCC-----CCCTTCCEEEEEEEHHHHHHHH
T ss_pred             --------CccccEEEEEEEeccccCCCC-----CCCCCceEEEEEEEHHHHHHHH
Confidence                    111222333333211111111     1245588999999999999987

>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1

Probab=99.74  E-value=2.9e-17  Score=126.76  Aligned_cols=126  Identities=13%  Similarity=0.106  Sum_probs=76.2

Q ss_pred             ceeeEEEEEEeCCCCEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhhh
Q 026407           69 YRRNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQK  148 (239)
Q Consensus        69 ~~~~v~v~i~~~~~~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~  148 (239)
                      .+..+++++++.+++++||++|..  |.|.||||++|+||++++||+||+.||||+++........ +..+.++...   
T Consensus        17 ~~~~~~~vi~~~~~~~vLl~~r~~--g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~-~~~~~~~~~~---   90 (148)
T 2azw_A           17 TRYAAYIIVSKPENNTMVLVQAPN--GAYFLPGGEIEGTETKEEAIHREVLEELGISVEIGCYLGE-ADEYFYSNHR---   90 (148)
T ss_dssp             ECCEEEEECEEGGGTEEEEEECTT--SCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEE-EEEEEEETTT---
T ss_pred             eeeEEEEEEECCCCCeEEEEEcCC--CCEeCCCcccCCCCCHHHHHHHHHHHHhCCeeEeeeEEEE-EEEEEcCCCC---
Confidence            345666777776333999999853  8999999999999999999999999999998743321111 1111111100   


Q ss_pred             cccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhcchHH-HHHHHh
Q 026407          149 LNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRKPCG-LIFRYF  214 (239)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~-~~~~~l  214 (239)
                            .........+|.+.....  ..      ...+|+.++.|++++++.++...+.. .++..+
T Consensus        91 ------~~~~~~~~~~~~~~~~~~--~~------~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~  143 (148)
T 2azw_A           91 ------QTAYYNPGYFYVANTWRQ--LS------EPLERTNTLHWVAPEEAVRLLKRGSHRWAVEKW  143 (148)
T ss_dssp             ------TEEEEEEEEEEEEEEEEE--CS------SCC-CCSEEEEECHHHHHHHBSCHHHHHHHHHH
T ss_pred             ------CcceEEEEEEEEEEcCcC--Cc------CCCCceeeEEEeeHHHHHhhhcchhHHHHHHHH
Confidence                  000011122333332211  11      12346779999999999998755544 444433

>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2

Probab=99.74  E-value=5.1e-17  Score=129.98  Aligned_cols=110  Identities=21%  Similarity=0.293  Sum_probs=74.0

Q ss_pred             ceeeEEEEEEeCCCCEEEEEEecCC----CCcEEc-CceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCch
Q 026407           69 YRRNVGICLINSSKKKIFAATRIHI----PYTWQM-PQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPL  143 (239)
Q Consensus        69 ~~~~v~v~i~~~~~~~vLl~~r~~~----~~~w~~-PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~  143 (239)
                      .+.++++++++.++ ++||++|...    +|.|+| |||++|.|||+++||+||++||||+++..+......  .+....
T Consensus        36 ~~~~~~v~i~~~~~-~vLl~~R~~~~~~~~g~w~l~pGG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~--~~~~~~  112 (180)
T 2fkb_A           36 RHRATYIVVHDGMG-KILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFAEHGQF--YFEDKN  112 (180)
T ss_dssp             CEEEEEEEEECSSS-CEEEEEECSSCSSSTTCEESSBCCBCBTTCCHHHHHHHHHHHHHCCBSCCCEEEEEE--EEEETT
T ss_pred             eeeEEEEEEECCCC-EEEEEECCCCCccCCCcEEeecCCCCCCCCCHHHHHHHHHHHHHCCCccceEEEEEE--EecCCC
Confidence            45577778888777 8999988653    488999 999999999999999999999999987543322111  111110


Q ss_pred             hhhhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh
Q 026407          144 KVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV  203 (239)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~  203 (239)
                                    ......+|.+.  . .....     .+.+|+.++.|++++++.++.
T Consensus       113 --------------~~~~~~~f~~~--~-~~~~~-----~~~~E~~~~~W~~~~el~~~~  150 (180)
T 2fkb_A          113 --------------CRVWGALFSCV--S-HGPFA-----LQEDEVSEVCWLTPEEITARC  150 (180)
T ss_dssp             --------------EEEEEEEEEEE--C-CCCCC-----CCTTTEEEEEEECHHHHHTTG
T ss_pred             --------------ceEEEEEEEEe--c-CCCcC-----CChhHhheEEEecHHHHHHHH
Confidence                          01122333333  1 11111     234588999999999999974

>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*

Probab=99.74  E-value=4.2e-17  Score=131.95  Aligned_cols=115  Identities=18%  Similarity=0.237  Sum_probs=77.0

Q ss_pred             ceeeEEEEEEeCCCCEEEEEEecCC----CCcEEc-CceecCCCCCHHHHHHHHHHHHhCCcccee-eeccCceeeecCc
Q 026407           69 YRRNVGICLINSSKKKIFAATRIHI----PYTWQM-PQGGADEGEDLINAALRELREETGVTSAEF-LAETPYWLTYDFP  142 (239)
Q Consensus        69 ~~~~v~v~i~~~~~~~vLl~~r~~~----~~~w~~-PgG~ve~gEs~~~aa~REl~EEtGl~~~~~-~~~~~~~~~~~~~  142 (239)
                      ++.+|++++++.++ ++||++|...    +|.|++ |||++|+|||+++||+||++||||+++..+ ...........++
T Consensus        31 ~~~~v~~~i~~~~g-~vLl~~R~~~~~~~~g~w~~~PgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~  109 (190)
T 1hzt_A           31 LHLAFSSWLFNAKG-QLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPPESIYPDFRYRATDP  109 (190)
T ss_dssp             CEECEEEEEECTTC-CEEEEEECTTCSSSTTCEEESEEECCCTTCCHHHHHHHHHHHHHCCCBSCCEEEETTCEEEEECT
T ss_pred             eEEEEEEEEEcCCC-EEEEEEeCCCCCCCCCcccCcccccCCCCCCHHHHHHHHHHHHHCCCchhhheeeeeEEEEeeCC
Confidence            55678888888777 8999998643    499999 999999999999999999999999998544 2222221111222


Q ss_pred             hhhhhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh
Q 026407          143 LKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV  203 (239)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~  203 (239)
                      +.           ........+|.+...+   ....     ..+|+.+++|++++++.++.
T Consensus       110 ~~-----------~~~~~~~~~f~~~~~~---~~~~-----~~~E~~~~~W~~~~el~~~~  151 (190)
T 1hzt_A          110 SG-----------IVENEVCPVFAARTTS---ALQI-----NDDEVMDYQWCDLADVLHGI  151 (190)
T ss_dssp             TS-----------CEEEEECCEEEEEBCS---CCCC-----CTTTEEEEEEECHHHHHHHH
T ss_pred             CC-----------CcceEEEEEEEEecCC---CCcC-----CccceeeEEEecHHHHHHHH
Confidence            10           0001122344444322   1221     34588999999999999876

>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A*

Probab=99.74  E-value=3.5e-17  Score=128.07  Aligned_cols=56  Identities=21%  Similarity=0.238  Sum_probs=48.8

Q ss_pred             eeeEEEEEEeCCCCEEEEEEecCC--CCcEEcCceecCCCCCHHHHHHHHHHHHhCCcc
Q 026407           70 RRNVGICLINSSKKKIFAATRIHI--PYTWQMPQGGADEGEDLINAALRELREETGVTS  126 (239)
Q Consensus        70 ~~~v~v~i~~~~~~~vLl~~r~~~--~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~  126 (239)
                      +.+|++++++.++ ++||++|...  +|.|.||||++|+|||+++||+||++||||+++
T Consensus        18 ~~~v~~vi~~~~~-~vLl~~r~~~~~~g~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~   75 (160)
T 1rya_A           18 LVSLDFIVENSRG-EFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRL   75 (160)
T ss_dssp             EEEEEEEEECTTS-CEEEEEECSSSSTTSEECCEEECCTTCCHHHHHHHHHHHHHSSCC
T ss_pred             EEEEEEEEEcCCC-EEEEEeccCCCCCCEEECCccccCCCCCHHHHHHHHHHHHHCCCC
Confidence            4577778887666 8999888754  389999999999999999999999999999985

>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124}

Probab=99.74  E-value=3.6e-17  Score=128.41  Aligned_cols=56  Identities=18%  Similarity=0.204  Sum_probs=48.6

Q ss_pred             ceeeEEEEEEeCCCCEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccc
Q 026407           69 YRRNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSA  127 (239)
Q Consensus        69 ~~~~v~v~i~~~~~~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~  127 (239)
                      .+.+|++++++ ++ +|||++|.. +|.|.||||++|+|||+++||+||++||||+++.
T Consensus         5 ~~~~v~~vi~~-~~-~vLL~~r~~-~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~   60 (159)
T 3f6a_A            5 RHFTVSVFIVC-KD-KVLLHLHKK-AKKMLPLGGHIEVNELPEEACIREAKEEAGLNVT   60 (159)
T ss_dssp             SCEEEEEEEEE-TT-EEEEEECSS-SCCEECEEEECCTTCCHHHHHHHHHHHHHCCCCE
T ss_pred             ceEEEEEEEEE-CC-EEEEEEcCC-CCeEECCccCccCCCCHHHHHHHHHHHHhCCCce
Confidence            34566777777 45 999999876 5899999999999999999999999999999874

>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A

Probab=99.73  E-value=3.7e-17  Score=127.26  Aligned_cols=103  Identities=22%  Similarity=0.355  Sum_probs=66.8

Q ss_pred             EEEeCCCCEEEEEEecCC-CCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhhhcccccC
Q 026407           76 CLINSSKKKIFAATRIHI-PYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQKLNRRWG  154 (239)
Q Consensus        76 ~i~~~~~~~vLl~~r~~~-~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (239)
                      ++++.++ ++||++|... +|.|.||||++|.|||+++||+||++||||+++......  ....+.+++.          
T Consensus        10 ~ii~~~~-~vLl~~r~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~--~~~~~~~~~~----------   76 (153)
T 3shd_A           10 CVVHAEG-KFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHFI--RMHQWIAPDK----------   76 (153)
T ss_dssp             EEEEETT-EEEEEEEEETTEEEEECSEEECCTTCCHHHHHHHHHHHHHCCCCCCCEEE--EEEEECCTTS----------
T ss_pred             EEEEeCC-EEEEEEecCCCCCCEECCeEEeCCCCCHHHHHHHHHHHHHCcccccCcEE--EEEEEecCCC----------
Confidence            4444555 9999888632 388999999999999999999999999999997432211  1122333221          


Q ss_pred             CcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHH
Q 026407          155 TNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVL  200 (239)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~  200 (239)
                         ......+|.+.......      ....+.|+.+++|++++++.
T Consensus        77 ---~~~~~~~f~~~~~~~~~------~~~~~~E~~~~~W~~~~el~  113 (153)
T 3shd_A           77 ---TPFLRFLFAIELEQICP------TQPHDSDIDCCRWVSAEEIL  113 (153)
T ss_dssp             ---CCEEEEEEEEECSSCCC------CCCCSTTCCEEEEECHHHHH
T ss_pred             ---ceEEEEEEEEEccccCc------CCCCcccceeeEEecHHHhh
Confidence               11122344444333211      12235588999999999994

>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A

Probab=99.73  E-value=4.1e-17  Score=130.76  Aligned_cols=113  Identities=18%  Similarity=0.237  Sum_probs=72.3

Q ss_pred             eeeEEEEEEeCCCCEEEEEEecCC--CCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhh
Q 026407           70 RRNVGICLINSSKKKIFAATRIHI--PYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQ  147 (239)
Q Consensus        70 ~~~v~v~i~~~~~~~vLl~~r~~~--~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~  147 (239)
                      +..+++++++.++ ++||++|...  +|.|.||||++|+|||+++||+||++||||+++..+.....  ..+.++.    
T Consensus        24 ~~~~~~~vi~~~~-~vLL~~r~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~--~~~~~~~----   96 (176)
T 3q93_A           24 SRLYTLVLVLQPQ-RVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALHKVGQ--IVFEFVG----   96 (176)
T ss_dssp             EEEEEEEEEECSS-EEEEEEECSSTTTTSEECEEEECCTTSCHHHHHHHHHHHHHSCEESCCEEEEE--EEEEETT----
T ss_pred             CcEEEEEEEEeCC-EEEEEEEcCCCCCCeEECceecCCCCCCHHHHHHHHHHHHHCCcceeeEEEEE--EEEEcCC----
Confidence            3445556666666 9999888653  49999999999999999999999999999999753322211  1222211    


Q ss_pred             hcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhcch
Q 026407          148 KLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRKP  206 (239)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~  206 (239)
                                .......++|.+.......       ...|..+++|++++++.++...+
T Consensus        97 ----------~~~~~~~~~f~~~~~~~~~-------~~~e~~~~~W~~~~el~~~~~~~  138 (176)
T 3q93_A           97 ----------EPELMDVHVFCTDSIQGTP-------VESDEMRPCWFQLDQIPFKDMWP  138 (176)
T ss_dssp             ----------CSCEEEEEEEEESCEESCC-------CCCSSEEEEEEETTCCCGGGBCT
T ss_pred             ----------CCcEEEEEEEEEECCCCCc-------CCCcceeeEEeeHHHccccccCc
Confidence                      0112223444443322111       12356678999999999775333

>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1

Probab=99.73  E-value=3.4e-17  Score=127.18  Aligned_cols=122  Identities=17%  Similarity=0.229  Sum_probs=74.4

Q ss_pred             EEEeCCCCEEEEEEecCC--CCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhhhccccc
Q 026407           76 CLINSSKKKIFAATRIHI--PYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQKLNRRW  153 (239)
Q Consensus        76 ~i~~~~~~~vLl~~r~~~--~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (239)
                      ++++.++ ++||++|...  ++.|.||||++|+|||+++||+||++||||+++.......  ...+.++...        
T Consensus        13 ~ii~~~~-~vLl~~r~~~~~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~--~~~~~~~~~~--------   81 (153)
T 2b0v_A           13 AVIEQDD-KYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPEVLTG--IYHWTCASNG--------   81 (153)
T ss_dssp             EECEETT-EEEEEEECSSSSCCEEECSEEECCTTSCHHHHHHHHHHHHHSEEEEEEEEEE--EEEEEETTTT--------
T ss_pred             EEEeeCC-EEEEEEEcCCCCCCeEECCCcCcCCCCCHHHHHHHHHHHhhCcEeccceEEE--EEEEeCCCCC--------
Confidence            3344555 8999888654  4799999999999999999999999999999874322111  1122222100        


Q ss_pred             CCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh---cchHHHHHHHhhhhhcC
Q 026407          154 GTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV---RKPCGLIFRYFSPFCLA  220 (239)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~---~~~~~~~~~~l~~~~~~  220 (239)
                          ......+|.+.....  ..    ....++|+.+++|++++++.++.   ..+  .+.+.+..++..
T Consensus        82 ----~~~~~~~f~~~~~~~--~~----~~~~~~e~~~~~W~~~~el~~~~~~~~~~--~~~~~l~~~~~~  139 (153)
T 2b0v_A           82 ----TTYLRFTFSGQVVSF--DP----DRKLDTGIVRAAWFSIDEIRAKQAMHRTP--LVMQCIEDYHAG  139 (153)
T ss_dssp             ----EEEEEEEEEEEEEEE--CT----TSCCCTTEEEEEEEEHHHHHHTGGGBSST--HHHHHHHHHHTT
T ss_pred             ----cEEEEEEEEEEeCCC--CC----CCCCCCCeeeEEEecHHHHhhhhcccCcH--HHHHHHHHHHhC
Confidence                001122233333221  10    11234588899999999999963   333  344444555554

>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A

Probab=99.73  E-value=1.2e-17  Score=142.64  Aligned_cols=115  Identities=18%  Similarity=0.226  Sum_probs=75.9

Q ss_pred             EEEeCCCCEEEEEEecCCC-CcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhhhcccccC
Q 026407           76 CLINSSKKKIFAATRIHIP-YTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQKLNRRWG  154 (239)
Q Consensus        76 ~i~~~~~~~vLl~~r~~~~-~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (239)
                      ++++.++ +|||++|...+ |.|.+|||++|+|||+++||+||++||||+++..+.....  ..+.+++           
T Consensus       145 v~v~~~~-~vLL~rr~~~~~g~w~lPgG~vE~GEt~eeAa~REv~EEtGl~v~~~~~~~~--~~~~~~~-----------  210 (269)
T 1vk6_A          145 VAIRRDD-SILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRYVTS--QPWPFPQ-----------  210 (269)
T ss_dssp             EEEEETT-EEEEEEETTTCSSCCBCEEEECCTTCCHHHHHHHHHHHHHCCEEEEEEEEEE--EEEETTE-----------
T ss_pred             EEEEeCC-EEEEEEecCCCCCcEECCcCcCCCCCCHHHHHHHHHHHHhCceeeeEEEEEE--EecCCCC-----------
Confidence            3444455 99999987654 9999999999999999999999999999999854432211  1233322           


Q ss_pred             CcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh-cchHH-HHHHHhhh
Q 026407          155 TNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV-RKPCG-LIFRYFSP  216 (239)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~-~~~~~-~~~~~l~~  216 (239)
                           .....|.+....  .++..     +.+|..+++|++++++..+. ...+. .+++.+..
T Consensus       211 -----~~~~~f~a~~~~--~~~~~-----~~~E~~~~~W~~~~el~~l~~~~si~~~li~~~l~  262 (269)
T 1vk6_A          211 -----SLMTAFMAEYDS--GDIVI-----DPKELLEANWYRYDDLPLLPPPGTVARRLIEDTVA  262 (269)
T ss_dssp             -----EEEEEEEEEEEE--CCCCC-----CTTTEEEEEEEETTSCCSCCCTTSHHHHHHHHHHH
T ss_pred             -----EEEEEEEEEECC--CCcCC-----CCcceEEEEEEEHHHhhhcccCcHHHHHHHHHHHH
Confidence                 223344444332  22222     24588999999999998876 33333 45544433

>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli}

Probab=99.72  E-value=8.6e-17  Score=122.94  Aligned_cols=117  Identities=21%  Similarity=0.276  Sum_probs=73.5

Q ss_pred             eEEEEEEeCCCCEEEEEEecCC---CCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhhh
Q 026407           72 NVGICLINSSKKKIFAATRIHI---PYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQK  148 (239)
Q Consensus        72 ~v~v~i~~~~~~~vLl~~r~~~---~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~  148 (239)
                      .+++++++.++ ++||++|...   +|.|+||||+++.||++++||.||+.||||+++..+....  ...+.+++     
T Consensus        10 ~~~~~ii~~~~-~vLl~~r~~~~~~~g~w~lPgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~--~~~~~~~~-----   81 (140)
T 2rrk_A           10 EVVAAIIERDG-KILLAQRPAQSDQAGLWEFAGGKVEPDESQRQALVRELREELGIEATVGEYVA--SHQREVSG-----   81 (140)
T ss_dssp             EEEEEEEEETT-EEEEEECCSSCSCCCCEECCEEECCTTSCHHHHHHHHHHHHSCEEEECCEEEE--EEEEEETT-----
T ss_pred             eEEEEEEEcCC-EEEEEEcCCCCCCCCEEECCceecCCCCCHHHHHHHHHHHHHCCeeecccEEE--EEEEecCC-----
Confidence            34444456666 9999998654   3999999999999999999999999999999874322111  11222221     


Q ss_pred             cccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhcchHH-HHHHHh
Q 026407          149 LNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRKPCG-LIFRYF  214 (239)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~-~~~~~l  214 (239)
                                 .....++|.+......  .     ...|+.++.|++++++.++...+.. .+++.+
T Consensus        82 -----------~~~~~~~~~~~~~~~~--~-----~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~  130 (140)
T 2rrk_A           82 -----------RIIHLHAWHVPDFHGT--L-----QAHEHQALVWCSPEEALQYPLAPADIPLLEAF  130 (140)
T ss_dssp             -----------EEEEEEEEEESEEEEC--C-----CCSSCSCEEEECHHHHTTSCCCTTHHHHHHHH
T ss_pred             -----------cEEEEEEEEEEeeCCC--c-----CCCccceeEEeCHHHHhhCCCChhHHHHHHHH
Confidence                       1122223333322111  1     1247788999999999987633333 444443

>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus}

Probab=99.72  E-value=4.6e-17  Score=124.78  Aligned_cols=107  Identities=20%  Similarity=0.152  Sum_probs=70.6

Q ss_pred             eeeEEEEEEe--CCCCE--EEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhh
Q 026407           70 RRNVGICLIN--SSKKK--IFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKV  145 (239)
Q Consensus        70 ~~~v~v~i~~--~~~~~--vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~  145 (239)
                      +..|++++++  .++ +  +||++|...++.|+||||++|+|||+++||+||++||||+++.....    ...+..+...
T Consensus         9 ~~~v~~vi~~~~~~~-~~~vLl~~r~~~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~----~~~~~~~~~~   83 (139)
T 2yyh_A            9 LLATDVIIRLWDGEN-FKGIVLIERKYPPVGLALPGGFVEVGERVEEAAAREMREETGLEVRLHKL----MGVYSDPERD   83 (139)
T ss_dssp             EEEEEEEEEEEETTE-EEEEEEEEECSSSCSEECCEEECCTTCCHHHHHHHHHHHHHCCCCEEEEE----EEEECCTTSC
T ss_pred             eEEEEEEEEEEcCCC-cEEEEEEEecCCCCcEECccccCCCCCCHHHHHHHHHHHHHCCCcccceE----EEEECCCCcC
Confidence            4566666665  555 6  99999987666699999999999999999999999999998743211    1112221100


Q ss_pred             hhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHH
Q 026407          146 KQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVL  200 (239)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~  200 (239)
                                ........+|.+...+   ..      ...+|+.+++|++++++.
T Consensus        84 ----------~~~~~~~~~f~~~~~~---~~------~~~~e~~~~~W~~~~el~  119 (139)
T 2yyh_A           84 ----------PRAHVVSVVWIGDAQG---EP------KAGSDAKKVKVYRLEEIP  119 (139)
T ss_dssp             ----------TTSCEEEEEEEEEEES---CC------CCCTTEEEEEEECTTSCC
T ss_pred             ----------CCceEEEEEEEEecCC---cc------CCCCCcceEEEEEHHHCC
Confidence                      0011123344444421   11      134588899999999999

>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A

Probab=99.72  E-value=6.3e-17  Score=128.56  Aligned_cols=109  Identities=27%  Similarity=0.402  Sum_probs=69.5

Q ss_pred             eeeEEEEEEeCCCCEEEEEEecCC---CCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhh
Q 026407           70 RRNVGICLINSSKKKIFAATRIHI---PYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVK  146 (239)
Q Consensus        70 ~~~v~v~i~~~~~~~vLl~~r~~~---~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~  146 (239)
                      +.+|++++++ ++ ++||++|...   +|.|+||||++|+|||+++||+||++||||+ +..+......   +..+.   
T Consensus        34 ~~~v~vii~~-~~-~vLL~~~~r~~~~~~~w~lPgG~ve~gEs~~~aa~REl~EEtGl-~~~~~~l~~~---~~~~~---  104 (170)
T 1v8y_A           34 KPAVAVIALR-EG-RMLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTGL-SGDLTYLFSY---FVSPG---  104 (170)
T ss_dssp             CCEEEEEEEE-TT-EEEEEECCBTTTTBCCBBCSEEECCTTCCHHHHHHHHHHHHHSE-EEEEEEEEEE---ESCTT---
T ss_pred             CCeEEEEEEE-CC-EEEEEEEEeCCCCCCEEECCccccCCCCCHHHHHHHHHHHHHCC-CcCceeeEEE---ecCCC---
Confidence            3477788888 66 8999887532   4899999999999999999999999999999 6444322111   11111   


Q ss_pred             hhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh
Q 026407          147 QKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV  203 (239)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~  203 (239)
                                .......+|.+..... ...     ..+++|+.++.|++++++.++.
T Consensus       105 ----------~~~~~~~~f~~~~~~~-~~~-----~~~~~E~~~~~W~~~~el~~~~  145 (170)
T 1v8y_A          105 ----------FTDEKTHVFLAENLKE-VEA-----HPDEDEAIEVVWMRPEEALERH  145 (170)
T ss_dssp             ----------TBCCEEEEEEEEEEEE-CC-------------CEEEEECHHHHHHHH
T ss_pred             ----------ccccEEEEEEEEeccc-cCC-----CCCCCceEEEEEEEHHHHHHHH
Confidence                      1122344444443221 111     1234588999999999999987

>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua}

Probab=99.72  E-value=1.9e-17  Score=133.69  Aligned_cols=129  Identities=22%  Similarity=0.163  Sum_probs=77.3

Q ss_pred             eeEEEEEE--eCC----CCEEEEEEec---------CCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCc
Q 026407           71 RNVGICLI--NSS----KKKIFAATRI---------HIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPY  135 (239)
Q Consensus        71 ~~v~v~i~--~~~----~~~vLl~~r~---------~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~  135 (239)
                      .+|.++++  +.+    +.+|||++|.         ..+|.|.+|||++|+|||+++||+||++||||+++..+...   
T Consensus        28 ~~v~~vv~~~~~~~~~~~~~vLL~~r~~~~~~g~~~~~~g~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l---  104 (187)
T 3i9x_A           28 YTSDMILTTVKELNGKPTLHILLIKRSLTNAEGKPNMEGGKWAVPGGFVDENESAEQAAERELEEETSLTDIPLIPF---  104 (187)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEEEEECCSBCTTSSBCTTTTCEECSEEECCTTSCHHHHHHHHHHHHHCCCSCCCEEE---
T ss_pred             ceEEEEEEEEcCCCCCCCCEEEEEEEccccccccCCCCCCEEECCceeCCCCCCHHHHHHHHHHHHHCCCCcceEEE---
Confidence            45555444  333    2389999993         33599999999999999999999999999999987433211   


Q ss_pred             eeeecCchhhhhhcccccCCcccCc-eeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh----cchHH-H
Q 026407          136 WLTYDFPLKVKQKLNRRWGTNYKGQ-AQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV----RKPCG-L  209 (239)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~----~~~~~-~  209 (239)
                       ..+..+...           ..+. ....|.+.+.........     ..+|+.+++|++++++.++.    .+.++ .
T Consensus       105 -~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~-----~~~E~~~~~W~~~~el~~~~l~~~~~~il~~  167 (187)
T 3i9x_A          105 -GVFDKPGRD-----------PRGWIISRAFYAIVPPEALEKRA-----AGDDAAEIGLFPMTEALELPLAFDHLDMLKK  167 (187)
T ss_dssp             -EEECCTTSS-----------TTSSEEEEEEEEECCHHHHHHHH-----HSTTTTTEEEEEHHHHTTSCBSTTHHHHHHH
T ss_pred             -EEEcCCccC-----------CCCCEEEEEEEEEEcCcccCCcC-----CCCceeEEEEEeHHHcccCCCCccHHHHHHH
Confidence             112222110           0111 123333333322111111     13478899999999999753    33444 5


Q ss_pred             HHHHhhhhhc
Q 026407          210 IFRYFSPFCL  219 (239)
Q Consensus       210 ~~~~l~~~~~  219 (239)
                      +++.++....
T Consensus       168 a~~~l~~~~~  177 (187)
T 3i9x_A          168 AFSAITEEFL  177 (187)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHhhhh
Confidence            5555555443

>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A*

Probab=99.71  E-value=1.9e-17  Score=134.92  Aligned_cols=62  Identities=29%  Similarity=0.542  Sum_probs=51.0

Q ss_pred             CCceeeEEEEEE-eCCCCEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccce
Q 026407           67 DGYRRNVGICLI-NSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAE  128 (239)
Q Consensus        67 ~~~~~~v~v~i~-~~~~~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~  128 (239)
                      ..++..++++++ +.++.+|||++|...+|.|+||||++|+|||+++||+||++||||+++..
T Consensus        37 ~~~~~~~~~vi~~~~~~~~vLLv~r~~~~g~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~   99 (194)
T 2fvv_A           37 DGYKKRAACLCFRSESEEEVLLVSSSRHPDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGTL   99 (194)
T ss_dssp             TSCEEEEEEEEESSTTCCEEEEEECSSCTTSEECSEEECCTTCCHHHHHHHHHHHHHCEEEEE
T ss_pred             CCccccEEEEEEEECCCCEEEEEEEeCCCCcEECCCCcCCCCcCHHHHHHHHHHHHhCCcccc
Confidence            346666776666 33334999999887679999999999999999999999999999998743

>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A

Probab=99.71  E-value=4.4e-17  Score=129.29  Aligned_cols=108  Identities=21%  Similarity=0.302  Sum_probs=73.6

Q ss_pred             eeeEEEEEEeCCCCEEEEEEecCC----CCcEE-cCceecCCCCCHHHHHHHHHHHHhCCccce--eeeccCceeeec-C
Q 026407           70 RRNVGICLINSSKKKIFAATRIHI----PYTWQ-MPQGGADEGEDLINAALRELREETGVTSAE--FLAETPYWLTYD-F  141 (239)
Q Consensus        70 ~~~v~v~i~~~~~~~vLl~~r~~~----~~~w~-~PgG~ve~gEs~~~aa~REl~EEtGl~~~~--~~~~~~~~~~~~-~  141 (239)
                      +.++++++++.++ ++||++|...    +|.|+ +|||++++|||+.+||+||++||||+++..  +...    ..+. +
T Consensus        34 ~~~v~v~i~~~~~-~vLl~~r~~~~~~~~g~w~~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~l~~~----~~~~~~  108 (171)
T 1q27_A           34 VRVVNAFLRNSQG-QLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEIDALSWRPL----ASFSPF  108 (171)
T ss_dssp             CEEEEEEEEETTT-EEEECCSCCSSSCCCCSCCCSEEEECSSSSCHHHHHHHHHHHHHSCTTSSSCEEEE----EEECSS
T ss_pred             ceEEEEEEECCCC-eEEEEEecCCCCCCCCccccccCccccCCCCHHHHHHHHHHHHHCCcccccceEEE----EEEecc
Confidence            5677788888887 9999988542    48998 999999999999999999999999999743  2211    1111 1


Q ss_pred             chhhhhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh
Q 026407          142 PLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV  203 (239)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~  203 (239)
                      ...             ......+|.+..   ......     ...|+.+++|++++++.++.
T Consensus       109 ~~~-------------~~~~~~~f~~~~---~~~~~~-----~~~E~~~~~W~~~~el~~~~  149 (171)
T 1q27_A          109 QTT-------------LSSFMCVYELRS---DATPIF-----NPNDISGGEWLTPEHLLARI  149 (171)
T ss_dssp             SSC-------------CSSEEEEEEEEC---CCCCCS-----CTTTCSCCEEECHHHHHHHH
T ss_pred             CCC-------------CccEEEEEEEEE---CCcccc-----CchhhheEEEecHHHHHHHH
Confidence            110             011233333333   112222     23588899999999999764

>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A

Probab=99.70  E-value=5.9e-17  Score=133.49  Aligned_cols=115  Identities=17%  Similarity=0.174  Sum_probs=72.7

Q ss_pred             eeEEEEEEeCCCCEEEEEEecCC--------CCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCc
Q 026407           71 RNVGICLINSSKKKIFAATRIHI--------PYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFP  142 (239)
Q Consensus        71 ~~v~v~i~~~~~~~vLl~~r~~~--------~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~  142 (239)
                      .+|++++++++++++||+++...        ++.|+||||++|+||++++||+||++||||+++..+......   +..+
T Consensus        58 ~av~vl~~~~~~~~vLLvrq~R~~~~~~~~~~~~welPgG~ve~gE~~~~aA~REl~EEtGl~~~~~~~l~~~---~~~~  134 (209)
T 1g0s_A           58 HAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVKRTKPVLSF---LASP  134 (209)
T ss_dssp             CEEEEEEEETTTTEEEEEEEECGGGGGGSSCSEEEECEEEECCTTCCHHHHHHHHHHHHHCCCCCCEEEEEEE---ESCT
T ss_pred             CEEEEEEEECCCCEEEEEEeecccCCCCCCCCeEEEeCcccCCCCcCHHHHHHHHHHHHcCcccCcEEEeEEE---ecCC
Confidence            47777888854348888654322        367999999999999999999999999999998544332221   2221


Q ss_pred             hhhhhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh
Q 026407          143 LKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV  203 (239)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~  203 (239)
                      .             +.....++|++......  ........+++|..++.|++++++.+++
T Consensus       135 g-------------~~~~~~~~f~a~~~~~~--~~~~~~~~~e~E~~~~~w~~~~el~~~i  180 (209)
T 1g0s_A          135 G-------------GTSERSSIMVGEVDATT--ASGIHGLADENEDIRVHVVSREQAYQWV  180 (209)
T ss_dssp             T-------------TBCCEEEEEEEECCGGG--CC--------CCSCEEEEEEHHHHHHHH
T ss_pred             C-------------ccCcEEEEEEEEEcccc--ccCCCCCCCCCcEEEEEEEEHHHHHHHH
Confidence            1             12233445544432211  0000012345578899999999999987

>3o6z_A GDP-mannose pyrophosphatase NUDK; nudix, hydrolase, biofilm; 2.05A {Escherichia coli} SCOP: d.113.1.1 PDB: 3o52_A* 1viu_A 3o69_A 3o61_A

Probab=99.70  E-value=6.2e-17  Score=131.44  Aligned_cols=113  Identities=20%  Similarity=0.170  Sum_probs=72.9

Q ss_pred             eeEEEEEEeCCCCEEEEEEecC---------CCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecC
Q 026407           71 RNVGICLINSSKKKIFAATRIH---------IPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDF  141 (239)
Q Consensus        71 ~~v~v~i~~~~~~~vLl~~r~~---------~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~  141 (239)
                      .+|++++++.+++++||+++..         .++.|+||||++| |||+++||+||++||||+++..+......   +..
T Consensus        46 ~av~v~~~~~~~~~vlLv~~~r~~~~~~~~~~~~~w~lPgG~ve-gE~~~~aa~REl~EEtG~~~~~~~~l~~~---~~~  121 (191)
T 3o6z_A           46 NGATILLYNTKKKTVVLIRQFRVATWVNGNESGQLIESCAGLLD-NDEPEVCIRKEAIEETGYEVGEVRKLFEL---YMS  121 (191)
T ss_dssp             CEEEEEEEETTTTEEEEEEEECHHHHTTTCTTCEEEECEEEECC-SSCHHHHHHHHHHHHC-CCCSCEEEEEEE---ESC
T ss_pred             CEEEEEEEECCCCEEEEEEcCCccccccCCCCCeEEEecceEeC-CCCHHHHHHHHHHHHhCCccCcEEEEEEE---EeC
Confidence            4777888886544899877653         4589999999999 99999999999999999998544322221   111


Q ss_pred             chhhhhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh
Q 026407          142 PLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV  203 (239)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~  203 (239)
                      +             .+.....++|+....... ....  ....++|+.++.|++++++.+++
T Consensus       122 ~-------------~~~~~~~~~f~~~~~~~~-~~~~--~~~~~~E~~~~~w~~~~el~~~~  167 (191)
T 3o6z_A          122 P-------------GGVTELIHFFIAEYSDNQ-RANA--GGGVEDEAIEVLELPFSQALEMI  167 (191)
T ss_dssp             T-------------TTBCCEEEEEEEECCTTC-C----------CCSSEEEEEEHHHHHHHH
T ss_pred             C-------------CccCcEEEEEEEEEcccc-cccC--CCCCCCcEEEEEEEEHHHHHHHH
Confidence            1             112233445555443211 1111  01115588999999999999987

>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A

Probab=99.70  E-value=7.7e-17  Score=126.30  Aligned_cols=53  Identities=25%  Similarity=0.345  Sum_probs=46.6

Q ss_pred             eEEEEEEeCCCCEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccc
Q 026407           72 NVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSA  127 (239)
Q Consensus        72 ~v~v~i~~~~~~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~  127 (239)
                      .+++++++ ++ ++||++|.. +|.|.||||++|+|||+++||.||++||||+++.
T Consensus         3 ~~~~vi~~-~~-~vLL~~r~~-~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~   55 (156)
T 1k2e_A            3 VTSGVLVE-NG-KVLLVKHKR-LGVYIYPGGHVEHNETPIEAVKREFEEETGIVVE   55 (156)
T ss_dssp             EEEEECEE-TT-EEEEEECTT-TCSEECSEEECCTTCCHHHHHHHHHHHHHSEEEE
T ss_pred             EEEEEEEE-CC-EEEEEEEcC-CCcEECCeeecCCCCCHHHHHHHHHHHHHCCcce
Confidence            55667777 55 999999876 5899999999999999999999999999999874

>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A

Probab=99.70  E-value=6e-17  Score=132.97  Aligned_cols=112  Identities=17%  Similarity=0.202  Sum_probs=70.3

Q ss_pred             eeeEEEEEEeCCCCEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhhhc
Q 026407           70 RRNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQKL  149 (239)
Q Consensus        70 ~~~v~v~i~~~~~~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~  149 (239)
                      +..|+++|++ ++ +|||++|.. +|.|.||||++|+|||+.+||+||++||||+++.......    .+.....     
T Consensus        68 ~~~v~~vv~~-~~-~vLLv~r~~-~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~v~~~~~l~----~~~~~~~-----  135 (205)
T 3q1p_A           68 KVDIRAVVFQ-NE-KLLFVKEKS-DGKWALPGGWADVGYTPTEVAAKEVFEETGYEVDHFKLLA----IFDKEKH-----  135 (205)
T ss_dssp             EEEEEEEEEE-TT-EEEEEEC----CCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEE----EEEHHHH-----
T ss_pred             cceEEEEEEE-CC-EEEEEEEcC-CCcEECCcCccCCCCCHHHHHHHHHHHHHCCccccceEEE----EEecccc-----
Confidence            3566667776 45 999999874 5899999999999999999999999999999874221111    1110000     


Q ss_pred             ccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh
Q 026407          150 NRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV  203 (239)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~  203 (239)
                        .......+....+|.+.....  ...      .+.|+.+++|++++++.++.
T Consensus       136 --~~~~~~~~~~~~~~~~~~~~~--~~~------~~~E~~~~~w~~~~el~~l~  179 (205)
T 3q1p_A          136 --QPSPSATHVYKIFIGCEIIGG--EKK------TSIETEEVEFFGENELPNLS  179 (205)
T ss_dssp             --SCCCCSSCEEEEEEEEEEEEE--CCC------CCTTSCCEEEECTTSCCCBC
T ss_pred             --CCCCCCceEEEEEEEEEecCC--ccC------CCCcceEEEEEeHHHhhhcC
Confidence              000000111233444444322  111      23588999999999999877

>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A

Probab=99.69  E-value=1.7e-16  Score=128.69  Aligned_cols=113  Identities=19%  Similarity=0.188  Sum_probs=73.4

Q ss_pred             CceeeEEEEEEeCCCC-EEEEEEecC----CCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceee--eccCceeeec
Q 026407           68 GYRRNVGICLINSSKK-KIFAATRIH----IPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFL--AETPYWLTYD  140 (239)
Q Consensus        68 ~~~~~v~v~i~~~~~~-~vLl~~r~~----~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~--~~~~~~~~~~  140 (239)
                      ..+.++++++++.++. ++||++|..    .+|.|+||||++|+|||+++||+||++||||+++..+.  +.....  +.
T Consensus        32 ~~~~~~~~v~i~~~~~~~vLL~~r~~~~~~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~--~~  109 (194)
T 1nqz_A           32 HYRRAAVLVALTREADPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPTQAALREAQEEVALDPAAVTLLGELDDV--FT  109 (194)
T ss_dssp             -CEEEEEEEEEESSSSCBBCEEEEC------CCCEECSEEECCTTCCHHHHHHHHHHHHHCCCGGGCEEEEECCCE--EE
T ss_pred             CCceEEEEEEEecCCCeEEEEEEecCCCCCCCCeEECCcccCCCCCCHHHHHHHHHHHHHCCCccceEEEEEccCc--cC
Confidence            3556666666665543 788888864    35999999999999999999999999999999875332  222111  11


Q ss_pred             CchhhhhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHH-HHhh
Q 026407          141 FPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQV-LERV  203 (239)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel-~~~~  203 (239)
                      .                .+...++|++..........     ...+|+.++.|++++++ .+..
T Consensus       110 ~----------------~~~~~~~f~~~~~~~~~~~~-----~~~~E~~~~~W~~~~el~~~~~  152 (194)
T 1nqz_A          110 P----------------VGFHVTPVLGRIAPEALDTL-----RVTPEVAQIITPTLAELRAVPL  152 (194)
T ss_dssp             T----------------TTEEEEEEEEEECGGGGGGC-----CCCTTEEEEECCBHHHHHHSCC
T ss_pred             C----------------CCeEEEEEEEEecCCccccC-----CCccceeEEEEEEHHHhccCCC
Confidence            0                12234455555442211011     23458899999999999 7644

>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*

Probab=99.69  E-value=1.3e-16  Score=142.11  Aligned_cols=151  Identities=11%  Similarity=0.090  Sum_probs=96.3

Q ss_pred             CCCCCCCCCcCCCcccc--ccccCCCCCCCC--ceeeEEEEEEeCCCCEEEEEEecCC---CCcEEcCceecCCCCCHHH
Q 026407           40 RKPLCCSCDDSSSSLSS--FTALSTETPPDG--YRRNVGICLINSSKKKIFAATRIHI---PYTWQMPQGGADEGEDLIN  112 (239)
Q Consensus        40 ~~~~~c~~~~~~~a~~~--~~~~~~~~~~~~--~~~~v~v~i~~~~~~~vLl~~r~~~---~~~w~~PgG~ve~gEs~~~  112 (239)
                      |.|..||+...|.+...  ....|.+.++..  .+..+++++.+.++ +|||++|...   +|+|+||||++|.| |+++
T Consensus       206 P~C~~Cpl~~~C~~~~~~~~~~~PvK~~kk~~~~~~~~~~vi~~~~g-~vLL~rR~~~g~~~GlWefPGG~ve~g-t~~~  283 (369)
T 3fsp_A          206 PSCLLCPVQAYCQAFAEGVAEELPVKMKKTAVKQVPLAVAVLADDEG-RVLIRKRDSTGLLANLWEFPSCETDGA-DGKE  283 (369)
T ss_dssp             CCTTTCTTGGGCHHHHHTCGGGCSCCCCCCCCEEEEEEEEEEECSSS-EEEEEECCSSSTTTTCEECCEEECSSS-CTHH
T ss_pred             CCCCCCCChhhhHHHhcCCcccCCccccccCcceEEEEEEEEEeCCC-EEEEEECCCCCCcCCcccCCCcccCCC-CcHH
Confidence            34444999999987553  233344433332  33344555666666 9999999764   39999999999999 9999


Q ss_pred             HHHHHHHHHhCCccceeeeccCceeeecCchhhhhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeE
Q 026407          113 AALRELREETGVTSAEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWR  192 (239)
Q Consensus       113 aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~  192 (239)
                      |+.||+.||||+++......  ....+.+++.              .....+|.+.....            ..|..++.
T Consensus       284 al~REl~EE~Gl~v~~~~~l--~~~~h~~~h~--------------~~~~~~~~~~~~~~------------~~e~~~~~  335 (369)
T 3fsp_A          284 KLEQMVGEQYGLQVELTEPI--VSFEHAFSHL--------------VWQLTVFPGRLVHG------------GPVEEPYR  335 (369)
T ss_dssp             HHHHHHTTSSSCCEEECCCC--CEEEEECSSE--------------EEEEEEEEEEECCS------------SCCCTTEE
T ss_pred             HHHHHHHHHhCCceeeeccc--ccEEEEcceE--------------EEEEEEEEEEEcCC------------CCCccccE
Confidence            99999999999987433211  1233444331              01122333332221            23678899


Q ss_pred             EeCHhHHHHhhcchHH-HHHHHhhhhhcC
Q 026407          193 WMFPEQVLERVRKPCG-LIFRYFSPFCLA  220 (239)
Q Consensus       193 Wv~~eel~~~~~~~~~-~~~~~l~~~~~~  220 (239)
                      |++++++.++...+.. .+++.+..++..
T Consensus       336 Wv~~~el~~~~l~~~~~~il~~l~~~~~~  364 (369)
T 3fsp_A          336 LAPEDELKAYAFPVSHQRVWREYKEWASG  364 (369)
T ss_dssp             EEEGGGGGGSCCCHHHHHHHHHHHHHTC-
T ss_pred             EeeHHHhhhCCCCHHHHHHHHHHHHHhcC
Confidence            9999999987644555 677766665543

>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B*

Probab=99.69  E-value=5e-17  Score=139.09  Aligned_cols=112  Identities=16%  Similarity=0.317  Sum_probs=72.7

Q ss_pred             eeEEEEEEeCCCCEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhhhcc
Q 026407           71 RNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQKLN  150 (239)
Q Consensus        71 ~~v~v~i~~~~~~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (239)
                      .++++++++.+++++||++|...+|.|++|||++|+|||+++||+||++||||+++..+.... .+....+         
T Consensus       102 ~~v~avv~~~~~~~vLLv~r~~~~g~W~lPgG~ve~gEs~~eAA~REl~EEtGl~~~~l~~~~-~~~~~~~---------  171 (271)
T 2a6t_A          102 PVRGAIMLDMSMQQCVLVKGWKASSGWGFPKGKIDKDESDVDCAIREVYEETGFDCSSRINPN-EFIDMTI---------  171 (271)
T ss_dssp             CEEEEEEBCSSSSEEEEEEESSTTCCCBCSEEECCTTCCHHHHHHHHHHHHHCCCCTTTCCTT-CEEEEEE---------
T ss_pred             CeEEEEEEECCCCEEEEEEEeCCCCeEECCcccCCCCcCHHHHHHHHHHHHhCCCceeeeeee-eeccCCc---------
Confidence            356777777653499999998767999999999999999999999999999999986543222 1111111         


Q ss_pred             cccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh
Q 026407          151 RRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV  203 (239)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~  203 (239)
                             .++..++|++.........    .....+|+.+++|++++++.++.
T Consensus       172 -------~~~~~~~f~~~~~~~~~~~----~~~~~~E~~~~~W~~~~el~~~~  213 (271)
T 2a6t_A          172 -------RGQNVRLYIIPGISLDTRF----ESRTRKEISKIEWHNLMDLPTFK  213 (271)
T ss_dssp             -------TTEEEEEEEECCCCTTCCC----C------EEEEEEEEGGGSTTCC
T ss_pred             -------CCceEEEEEEEEecCcccC----CCCCccceeEEEEEEHHHHHHHH
Confidence                   1222333443322211111    11245689999999999998765

>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae}

Probab=99.68  E-value=9.7e-17  Score=125.08  Aligned_cols=113  Identities=12%  Similarity=0.158  Sum_probs=71.5

Q ss_pred             ceeeEEEEEEeCCCCEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhhh
Q 026407           69 YRRNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQK  148 (239)
Q Consensus        69 ~~~~v~v~i~~~~~~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~  148 (239)
                      ++.++++++++ ++ ++||++|   +|.|.||||++++||++++||+||++||||+++.......  ...+.++..    
T Consensus        18 ~~~~~~~ii~~-~~-~vLl~~r---~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~--~~~~~~~~~----   86 (154)
T 2pqv_A           18 FGVRATALIVQ-NH-KLLVTKD---KGKYYTIGGAIQVNESTEDAVVREVKEELGVKAQAGQLAF--VVENRFEVD----   86 (154)
T ss_dssp             EEEEEEECCEE-TT-EEEEEEE---TTEEECEEEECBTTCCHHHHHHHHHHHHHCCCEEEEEEEE--EEEEEEEET----
T ss_pred             EeEEEEEEEEE-CC-EEEEEec---CCeEECcccCcCCCCCHHHHHHHHHHHHhCCeeeeceEEE--EEeeeecCC----
Confidence            55666666776 45 8999999   5899999999999999999999999999999874321111  111111110    


Q ss_pred             cccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh
Q 026407          149 LNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV  203 (239)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~  203 (239)
                            +........+|.+..........     .+++|..+++|++++++.++.
T Consensus        87 ------~~~~~~~~~~f~~~~~~~~~~~~-----~~~~e~~~~~W~~~~el~~~~  130 (154)
T 2pqv_A           87 ------GVSYHNIEFHYLVDLLEDAPLTM-----QEDEKRQPCEWIDLDKLQNIQ  130 (154)
T ss_dssp             ------TEEEEEEEEEEEEEESSCCCSEE-----EETTEEEEEEEEEGGGGGGSC
T ss_pred             ------CCcceEEEEEEEEEecCCCCccc-----CCCCceeeEEEeEHHHHhhcC
Confidence                  00001122344444433211100     123478899999999999865

>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A*

Probab=99.68  E-value=3.1e-16  Score=129.26  Aligned_cols=116  Identities=23%  Similarity=0.244  Sum_probs=72.3

Q ss_pred             eeEEEEEEeCC---CCEEEEEEecCC---CCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchh
Q 026407           71 RNVGICLINSS---KKKIFAATRIHI---PYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLK  144 (239)
Q Consensus        71 ~~v~v~i~~~~---~~~vLl~~r~~~---~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~  144 (239)
                      .+|+++.+..+   +.++||+++...   ++.|+||||++|+||++++||+||++||||+++..+......   +..+  
T Consensus        62 ~av~v~~v~~~~~~~~~vlLv~q~R~~~~~~~welPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~---~~~~--  136 (212)
T 2dsc_A           62 DGVAVIPVLQRTLHYECIVLVKQFRPPMGGYCIEFPAGLIDDGETPEAAALRELEEETGYKGDIAECSPAV---CMDP--  136 (212)
T ss_dssp             SEEEEEEEEECTTSCCEEEEEEEEEGGGTEEEEECCEEECCTTCCHHHHHHHHHHHHHCCCCEEEEECCCE---ESCT--
T ss_pred             CEEEEEEEEeCCCCCcEEEEEEeecCCCCCcEEECCccccCCCCCHHHHHHHHHHHHhCCCccceEEeccE---EcCC--
Confidence            45655444322   237888664322   368999999999999999999999999999997533222111   1111  


Q ss_pred             hhhhcccccCCcccCceeEEEEEEEccccceecc-cCCCCCCCccceeEEeCHhHHHHhh
Q 026407          145 VKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINL-LGDGSEKPEFNEWRWMFPEQVLERV  203 (239)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~E~~~~~Wv~~eel~~~~  203 (239)
                                 .+.....++|++.+...... .. .....+++|+.++.|++++++.+++
T Consensus       137 -----------~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~E~~~~~w~~~~el~~~~  184 (212)
T 2dsc_A          137 -----------GLSNCTIHIVTVTINGDDAE-NARPKPKPGDGEFVEVISLPKNDLLQRL  184 (212)
T ss_dssp             -----------TTBCCEEEEEEEEEETTSGG-GSSCCCCCCTTCCCEEEEEEGGGHHHHH
T ss_pred             -----------CccCceEEEEEEEEeCcccc-ccCCCCCCCCCceEEEEEEEHHHHHHHH
Confidence                       12233455555554432111 00 0112345688999999999999876

>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans}

Probab=99.67  E-value=3.6e-16  Score=126.62  Aligned_cols=122  Identities=20%  Similarity=0.271  Sum_probs=73.1

Q ss_pred             eeEEEEEEeCCCCEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhhhcc
Q 026407           71 RNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQKLN  150 (239)
Q Consensus        71 ~~v~v~i~~~~~~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (239)
                      ..+++++.+ ++ +|||++|.. +|.|.+|||++|+|||+++||+||++||||+++.......  ...+.+++.      
T Consensus         5 ~v~~~vi~~-~~-~vLL~~r~~-~g~W~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~--~~~~~~~~~------   73 (188)
T 3fk9_A            5 RVTNCIVVD-HD-QVLLLQKPR-RGWWVAPGGKMEAGESILETVKREYWEETGITVKNPELKG--IFSMVIFDE------   73 (188)
T ss_dssp             EEEEEEEEE-TT-EEEEEECTT-TCCEECCEEECCTTCCHHHHHHHHHHHHHSCEESSCEEEE--EEEEEEEET------
T ss_pred             EEEEEEEEE-CC-EEEEEEeCC-CCeEECCeecccCCCCHHHHHHHHHHHHHCCCCCCceEEE--EEEEEecCC------
Confidence            344445554 55 999999865 5999999999999999999999999999999874322111  111221110      


Q ss_pred             cccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhcchHH-HHHHHh
Q 026407          151 RRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRKPCG-LIFRYF  214 (239)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~-~~~~~l  214 (239)
                           .........++|.+.......      ....+..+++|++++++.++...+.. .++..+
T Consensus        74 -----~~~~~~~~~~~f~a~~~~~~~------~~~~e~~~~~W~~~~el~~~~l~~~~~~~l~~~  127 (188)
T 3fk9_A           74 -----GKIVSEWMLFTFKATEHEGEM------LKQSPEGKLEWKKKDEVLELPMAAGDKWIFKHV  127 (188)
T ss_dssp             -----TEEEEEEEEEEEEESCEESCC------CSEETTEEEEEEEGGGGGGSCCCHHHHHHHHHH
T ss_pred             -----CcceEEEEEEEEEEECCCCCC------cCCCCCEeEEEEEHHHhhhCCCCHHHHHHHHHH
Confidence                 000001133444444322211      12234468999999999886533433 444433

>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A*

Probab=99.67  E-value=1.4e-16  Score=130.15  Aligned_cols=110  Identities=19%  Similarity=0.185  Sum_probs=72.4

Q ss_pred             eeEEEEEEeCCCCEEEEEEecCC---CCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhh
Q 026407           71 RNVGICLINSSKKKIFAATRIHI---PYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQ  147 (239)
Q Consensus        71 ~~v~v~i~~~~~~~vLl~~r~~~---~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~  147 (239)
                      .+|++++++.+  ++||++|...   ++.|+||||++|+||++++||+||++||||+++..+.......   ..+     
T Consensus        50 ~av~vl~~~~~--~vLLvrq~r~~~~~~~welPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~---~~~-----  119 (198)
T 1vhz_A           50 EAVMIVPIVDD--HLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGFGANDLTFLKKLS---MAP-----  119 (198)
T ss_dssp             CEEEEEEEETT--EEEEEEEEETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEE---CCT-----
T ss_pred             CEEEEEEEECC--EEEEEEcccCCCCCcEEEeCcccCCCCcCHHHHHHHHHHHHHCCCcCceEEEEEEe---CCC-----
Confidence            36666667765  8888776433   2789999999999999999999999999999875443222111   111     


Q ss_pred             hcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhc
Q 026407          148 KLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVR  204 (239)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~  204 (239)
                              .+.....++|++...... .     ...+++|..++.|++++++.+++.
T Consensus       120 --------~~~~~~~~~f~a~~~~~~-~-----~~~~~~E~~~~~w~~~~el~~~~~  162 (198)
T 1vhz_A          120 --------SYFSSKMNIVVAQDLYPE-S-----LEGDEPEPLPQVRWPLAHMMDLLE  162 (198)
T ss_dssp             --------TTCCCEEEEEEEEEEEEC-C-----CCCCCSSCCCEEEEEGGGGGGGGG
T ss_pred             --------CccCcEEEEEEEEeCCcc-c-----CCCCCCceEEEEEEEHHHHHHHHH
Confidence                    112233444444332211 1     112355888999999999999883

>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis}

Probab=99.67  E-value=1.4e-16  Score=130.81  Aligned_cols=125  Identities=12%  Similarity=0.127  Sum_probs=78.1

Q ss_pred             eeEEEEEEeCCCCEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceee--eccCceeeecCchhhhhh
Q 026407           71 RNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFL--AETPYWLTYDFPLKVKQK  148 (239)
Q Consensus        71 ~~v~v~i~~~~~~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~--~~~~~~~~~~~~~~~~~~  148 (239)
                      ..|.++|++. + +|||++|.  .|.|.||||++|+|||+.+||.||++||||+++....  ..... ..+.++.     
T Consensus        71 ~~v~~vv~~~-~-~vLLvrr~--~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~-~~~~~~~-----  140 (206)
T 3o8s_A           71 LDTRAAIFQE-D-KILLVQEN--DGLWSLPGGWCDVDQSVKDNVVKEVKEEAGLDVEAQRVVAILDK-HKNNPAK-----  140 (206)
T ss_dssp             EEEEEEEEET-T-EEEEEECT--TSCEECSEEECCTTSCHHHHHHHHHHHHHCEEEEEEEEEEEEEH-HHHCC-------
T ss_pred             ccEEEEEEEC-C-EEEEEEec--CCeEECCeeccCCCCCHHHHHHHHHHHHHCCcceeeeEEEEEec-cccCCCC-----
Confidence            4566677764 5 99999998  5999999999999999999999999999999874322  11110 0011110     


Q ss_pred             cccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhcchHH-HHHHHhhhhhcC
Q 026407          149 LNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRKPCG-LIFRYFSPFCLA  220 (239)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~-~~~~~l~~~~~~  220 (239)
                             ...+....+|.+.....  ...      .+.|+.+++|++++++.++...+.. +.+..+..+...
T Consensus       141 -------~~~~~~~~~~~~~~~~~--~~~------~~~E~~~~~w~~~~el~~l~~~~~~~~~l~~~~~~~~~  198 (206)
T 3o8s_A          141 -------SAHRVTKVFILCRLLGG--EFQ------PNSETVASGFFSLDDLPPLYLGKNTAEQLALCLEASRS  198 (206)
T ss_dssp             ----------CEEEEEEEEEEEEE--CCC------CCSSCSEEEEECTTSCCCBCTTTCCHHHHHHHHHHHHC
T ss_pred             -------CCceEEEEEEEEEecCC--eec------CCCCceEEEEEeHHHhhhccCCCchHHHHHHHHHHHHC
Confidence                   00111233344443322  111      2358899999999999988743333 445555444443

>3q91_A Uridine diphosphate glucose pyrophosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 2.70A {Homo sapiens}

Probab=99.67  E-value=1.5e-16  Score=132.03  Aligned_cols=118  Identities=22%  Similarity=0.239  Sum_probs=75.6

Q ss_pred             eeeEEEEEEeCCCCEEEEEEecCC----------------------------------CCcEEcCceecCC-CCCHHHHH
Q 026407           70 RRNVGICLINSSKKKIFAATRIHI----------------------------------PYTWQMPQGGADE-GEDLINAA  114 (239)
Q Consensus        70 ~~~v~v~i~~~~~~~vLl~~r~~~----------------------------------~~~w~~PgG~ve~-gEs~~~aa  114 (239)
                      +.+|++++++.+++++||+++...                                  ++.|+||||++|+ |||+++||
T Consensus        36 ~~aV~vl~~~~~~~~vlLvrQ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~welPgG~ve~~gEs~~eaA  115 (218)
T 3q91_A           36 HDSVTVLLFNSSRRSLVLVKQFRPAVYAGEVERRFPGSLAAVDQDGPRELQPALPGSAGVTVELCAGLVDQPGLSLEEVA  115 (218)
T ss_dssp             CCEEEEEEEEGGGTEEEEEEEECHHHHHHHTC-------------------------CCEEEECEEEECCSSSCCHHHHH
T ss_pred             CCeEEEEEEECCCCEEEEEEccccccccccccccccccccccccccccccccccccCCCeEEECCcceeCCCCCCHHHHH
Confidence            468888888864448888765321                                  4789999999999 99999999


Q ss_pred             HHHHHHHhCCcc--ceeeeccCceeeecCchhhhhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeE
Q 026407          115 LRELREETGVTS--AEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWR  192 (239)
Q Consensus       115 ~REl~EEtGl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~  192 (239)
                      +||++||||+++  ..+......+...+                +.+...++|++...... .........+++|+.++.
T Consensus       116 ~REl~EEtGl~~~~~~l~~l~~~~~~~g----------------~~~~~~~~f~a~~~~~~-~~~~~~~~~d~~E~~ev~  178 (218)
T 3q91_A          116 CKEAWEECGYHLAPSDLRRVATYWSGVG----------------LTGSRQTMFYTEVTDAQ-RSGPGGGLVEEGELIEVV  178 (218)
T ss_dssp             HHHHHHHHCBCCCGGGCEEEEEEEEC-------------------CCEEEEEEEEEECGGG-BCC---------CCEEEE
T ss_pred             HHHHHHHhCCccccCceEEEEEEecCCC----------------ccceEEEEEEEEECCcc-cccCCCCCCCCCcEEEEE
Confidence            999999999997  44443332211111                12334555665554321 111111233456899999


Q ss_pred             EeCHhHHHHhhc
Q 026407          193 WMFPEQVLERVR  204 (239)
Q Consensus       193 Wv~~eel~~~~~  204 (239)
                      |++++++.+++.
T Consensus       179 wv~l~el~~~i~  190 (218)
T 3q91_A          179 HLPLEGAQAFAD  190 (218)
T ss_dssp             EEEGGGHHHHHH
T ss_pred             EEEHHHHHHHHH
Confidence            999999999883

>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6

Probab=99.67  E-value=5.1e-17  Score=135.51  Aligned_cols=127  Identities=12%  Similarity=0.065  Sum_probs=79.4

Q ss_pred             ceeeEEEEEE--eCCCCEEEEEEecCC--CCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchh
Q 026407           69 YRRNVGICLI--NSSKKKIFAATRIHI--PYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLK  144 (239)
Q Consensus        69 ~~~~v~v~i~--~~~~~~vLl~~r~~~--~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~  144 (239)
                      .+.+|+++|+  +.++.+|||++|...  +|.|.+|||++|+|||+++||+||++||||+++..+..    ...+..+..
T Consensus        12 p~v~v~~vi~~~~~~~~~vLLv~r~~~~~~g~w~lPGG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~----l~~~~~~~r   87 (226)
T 2fb1_A           12 FYLGIDCIIFGFNEGEISLLLLKRNFEPAMGEWSLMGGFVQKDESVDDAAKRVLAELTGLENVYMEQ----VGAFGAIDR   87 (226)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEEECSSSSSTTCEECEEEECCTTSCHHHHHHHHHHHHHCCCSCEEEE----EEEECCTTS
T ss_pred             CeEEEEEEEEEEeCCCCEEEEEECcCCCCCCCEECCeeccCCCCCHHHHHHHHHHHHHCCCCCceEE----EEEeCCCCc
Confidence            3456666666  233349999999754  38999999999999999999999999999999753321    122222221


Q ss_pred             hhhhcccccCCcccCce-eEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh--cchHH-HHHHHhhhh
Q 026407          145 VKQKLNRRWGTNYKGQA-QKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV--RKPCG-LIFRYFSPF  217 (239)
Q Consensus       145 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~--~~~~~-~~~~~l~~~  217 (239)
                      .           ..+.. ...|.+.....  ...     ...+|..+++|++++++.++.  ...+. .++..++..
T Consensus        88 ~-----------~~~~~v~~~y~a~~~~~--~~~-----~~~~e~~~~~W~~~~el~~l~~dh~~il~~a~~rlr~~  146 (226)
T 2fb1_A           88 D-----------PGERVVSIAYYALININ--EYD-----RELVQKHNAYWVNINELPALIFDHPEMVDKAREMMKQK  146 (226)
T ss_dssp             S-----------SSSCEEEEEEEEECCTT--SSC-----HHHHHHTTEEEEETTSCCCBSTTHHHHHHHHHHHHHHH
T ss_pred             C-----------CCceEEEEEEEEEecCc--ccc-----cCCccccceEEEEHHHhhhccCCHHHHHHHHHHHHHhh
Confidence            0           00111 22333333321  111     123478899999999998765  33444 565666543

>1x51_A A/G-specific adenine DNA glycosylase; nudix domain, DNA repair, alpha-3 isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.113.1.3

Probab=99.67  E-value=1.3e-15  Score=118.94  Aligned_cols=121  Identities=15%  Similarity=0.203  Sum_probs=73.4

Q ss_pred             ceeeEEEEEEeCC--CCEEEEEEecCC---CCcEEcCceecCCCCCHH-HHHHHHHHHHhC-CccceeeeccCceeeecC
Q 026407           69 YRRNVGICLINSS--KKKIFAATRIHI---PYTWQMPQGGADEGEDLI-NAALRELREETG-VTSAEFLAETPYWLTYDF  141 (239)
Q Consensus        69 ~~~~v~v~i~~~~--~~~vLl~~r~~~---~~~w~~PgG~ve~gEs~~-~aa~REl~EEtG-l~~~~~~~~~~~~~~~~~  141 (239)
                      .+..+.++|.+.+  ++++||++|...   +|+|+||||++|.||+++ +||.||+.|||| +++..+.....  ..+.+
T Consensus        18 ~~~~~~~vi~~~~~~~~~vLl~~R~~~~~~~g~w~~PgG~~e~gE~~~~~a~~REl~EE~g~l~~~~~~~l~~--~~~~~   95 (155)
T 1x51_A           18 EESSATCVLEQPGALGAQILLVQRPNSGLLAGLWEFPSVTWEPSEQLQRKALLQELQRWAGPLPATHLRHLGE--VVHTF   95 (155)
T ss_dssp             EEEEEEEEEEEECSSSEEEEEEECCCCSTTCSCEECCEEECCSSHHHHHHHHHHHHHHHSCCCCSTTCEECCC--BCCBC
T ss_pred             eEEEEEEEEEecCCCCCEEEEEECCCCCCCCceecCCccccCCCCCHHHHHHHHHHHHHhCCcceeeeeecce--EEEec
Confidence            3444445555542  238999999754   389999999999999996 999999999999 77632221111  12222


Q ss_pred             chhhhhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhcchHH-HHHHHh
Q 026407          142 PLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRKPCG-LIFRYF  214 (239)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~-~~~~~l  214 (239)
                      ++                .....++|.+.......       ...|..++.|++++++.++...+.. +++..+
T Consensus        96 ~~----------------~~~~~~~~~~~~~~~~~-------~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~  146 (155)
T 1x51_A           96 SH----------------IKLTYQVYGLALEGQTP-------VTTVPPGARWLTQEEFHTAAVSTAMKKVFRVY  146 (155)
T ss_dssp             SS----------------CEEEEEEEEEECSSCCC-------CCCCCTTEEEEEHHHHHHSCCCHHHHHHHHHH
T ss_pred             CC----------------ccEEEEEEEEEEcCCCC-------CCCCCCccEEccHHHhhhcCCCHHHHHHHHHH
Confidence            22                12222233332221111       1235678999999999987644433 555444

>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A*

Probab=99.67  E-value=3.3e-17  Score=123.47  Aligned_cols=114  Identities=24%  Similarity=0.270  Sum_probs=72.8

Q ss_pred             EEEEEeCCCCEEEEEEecCC---CCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhhhcc
Q 026407           74 GICLINSSKKKIFAATRIHI---PYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQKLN  150 (239)
Q Consensus        74 ~v~i~~~~~~~vLl~~r~~~---~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (239)
                      ++++++.++ ++||++|...   +|.|+||||++++|||+.+||.||++||||+++..+.....  ..+.+++.      
T Consensus         8 ~~ii~~~~~-~vLl~~r~~~~~~~g~w~~PgG~~e~gE~~~~aa~RE~~EE~G~~~~~~~~~~~--~~~~~~~~------   78 (129)
T 1mut_A            8 VGIIRNENN-EIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQHFSLFEK--LEYEFPDR------   78 (129)
T ss_dssp             CEECEETTT-EEEEEECSSCCSSSCCEECCCCCSSSCSSTTHHHHHHHHTTTCCSSCEECCCCC--CBCCCSSC------
T ss_pred             EEEEEecCC-EEEEEEeCCCCCCCCeEECCccCcCCCCCHHHHHHHHHHHHhCCccccceEEEE--EEEecCCc------
Confidence            344567766 9999998764   39999999999999999999999999999998753321111  12222220      


Q ss_pred             cccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhcchHH-HHHHH
Q 026407          151 RRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRKPCG-LIFRY  213 (239)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~-~~~~~  213 (239)
                              .....+|.+.....  .       ...+|..++.|++++++.++...+.. ++++.
T Consensus        79 --------~~~~~~~~~~~~~~--~-------~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~  125 (129)
T 1mut_A           79 --------HITLWFWLVERWEG--E-------PWGKEGQPGEWMSLVGLNADDFPPANEPVIAK  125 (129)
T ss_dssp             --------EEECCCEEEEECSS--C-------CCCCSSCCCEEEESSSCCTTTSCTTCHHHHHH
T ss_pred             --------eEEEEEEEEEccCC--c-------cCCcccceeEEeCHHHcccccCCchhHHHHHH
Confidence                    01122333333221  1       12347788999999999887533322 44443

>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1

Probab=99.66  E-value=4.9e-16  Score=121.09  Aligned_cols=122  Identities=15%  Similarity=0.113  Sum_probs=71.5

Q ss_pred             ceeeEEEEEEeCCCCE--EEEEEecCCC-CcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhh
Q 026407           69 YRRNVGICLINSSKKK--IFAATRIHIP-YTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKV  145 (239)
Q Consensus        69 ~~~~v~v~i~~~~~~~--vLl~~r~~~~-~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~  145 (239)
                      .+..+++++.+.++.+  +|+++|...+ ..|.||||++|+|||+++||+||++||||+++......  ....+.+++  
T Consensus         7 ~~~~~~~ii~~~~~~~~~vLl~~r~~~~~~gw~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~--~~~~~~~~~--   82 (155)
T 2b06_A            7 TILTNICLIEDLETQRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEETGLTIQNPQLV--GIKNWPLDT--   82 (155)
T ss_dssp             EEEEEEEEEEETTTTEEEEEEEC-----CCEEECCCCBCCTTSCHHHHHHHHHHHHHSEEEESCEEE--EEEEEECTT--
T ss_pred             cEEEEEEEEEECCCCeEEEEEEECCCCCCCCEeccceecCCCCCHHHHHHHHHHHHhCccccCCcEE--EEEeeccCC--
Confidence            4456666777643222  8888887543 23899999999999999999999999999987432211  111111111  


Q ss_pred             hhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhcchHH-HHHHHh
Q 026407          146 KQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRKPCG-LIFRYF  214 (239)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~-~~~~~l  214 (239)
                                   +.....+++.+......  .     ...|..+++|++++++.++...+.. .++..+
T Consensus        83 -------------~~~~~~~~~~~~~~~~~--~-----~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~  132 (155)
T 2b06_A           83 -------------GGRYIVICYKATEFSGT--L-----QSSEEGEVSWVQKDQIPNLNLAYDMLPLMEMM  132 (155)
T ss_dssp             -------------SCEEEEEEEEECEEEEC--C-----CCBTTBEEEEEEGGGGGGSCBCTTHHHHHHHH
T ss_pred             -------------CceEEEEEEEEEecCCC--C-----CCCcceeeEEeeHHHhhhCCCChhHHHHHHHH
Confidence                         11223333333322111  1     1247789999999999987644433 444433

>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A*

Probab=99.66  E-value=2e-16  Score=129.99  Aligned_cols=112  Identities=20%  Similarity=0.256  Sum_probs=70.3

Q ss_pred             eeEEEEEEeCCCCEEEEEEecCC---CCcEEcCceecC-CCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhh
Q 026407           71 RNVGICLINSSKKKIFAATRIHI---PYTWQMPQGGAD-EGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVK  146 (239)
Q Consensus        71 ~~v~v~i~~~~~~~vLl~~r~~~---~~~w~~PgG~ve-~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~  146 (239)
                      .+|++++++.++ ++||++|...   ++.|+||||++| +|||+++||+||++||||+++..+......   +.++.   
T Consensus        44 ~av~v~i~~~~~-~vLLvrr~r~~~~~~~w~lPgG~ve~~gEs~~~aa~REl~EEtGl~~~~~~~l~~~---~~~~~---  116 (207)
T 1mk1_A           44 GAVAIVAMDDNG-NIPMVYQYRHTYGRRLWELPAGLLDVAGEPPHLTAARELREEVGLQASTWQVLVDL---DTAPG---  116 (207)
T ss_dssp             CEEEEEECCTTS-EEEEEEEEETTTTEEEEECCEEECCSTTCCHHHHHHHHHHHHHCEEEEEEEEEEEE---CSCTT---
T ss_pred             CEEEEEEEcCCC-EEEEEEeecCCCCCcEEEeCCccccCCCCCHHHHHHHHHHHHHCCcccccEEEEEE---EcCCC---
Confidence            467777787776 8999877543   379999999999 999999999999999999987544222111   22221   


Q ss_pred             hhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh
Q 026407          147 QKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV  203 (239)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~  203 (239)
                                +.....++|++.........    ...+++|+.++.|++++++.++.
T Consensus       117 ----------~~~~~~~~f~~~~~~~~~~~----~~~~~~E~~~~~Wv~~~el~~~~  159 (207)
T 1mk1_A          117 ----------FSDESVRVYLATGLREVGRP----EAHHEEADMTMGWYPIAEAARRV  159 (207)
T ss_dssp             ----------TBCCCEEEEEEEEEEECCC--------------CEEEEEHHHHHHHH
T ss_pred             ----------ccccEEEEEEEEccccCCCC----CCCCCCceEEEEEEEHHHHHHHH
Confidence                      11223444544432211110    01234588999999999999987

>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A*

Probab=99.65  E-value=4.7e-16  Score=130.76  Aligned_cols=126  Identities=17%  Similarity=0.187  Sum_probs=77.4

Q ss_pred             eeEEEEEE--eCCCCEEEEEEecCC--CCcEEcCceecCC--CCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchh
Q 026407           71 RNVGICLI--NSSKKKIFAATRIHI--PYTWQMPQGGADE--GEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLK  144 (239)
Q Consensus        71 ~~v~v~i~--~~~~~~vLl~~r~~~--~~~w~~PgG~ve~--gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~  144 (239)
                      .+|.++|+  +.++.+|||++|...  +|.|.+|||++|+  |||+++||+||++||||+++..+...    ..+..+..
T Consensus        23 v~v~~vi~~~~~~~~~vLLv~R~~~~~~g~W~lPGG~ve~~~gEs~~~AA~REl~EEtGl~~~~~~~l----~~~~~~~r   98 (240)
T 3gz5_A           23 LTVDAVLFTYHDQQLKVLLVQRSNHPFLGLWGLPGGFIDETCDESLEQTVLRKLAEKTAVVPPYIEQL----CTVGNNSR   98 (240)
T ss_dssp             EEEEEEEEEEETTEEEEEEEECCSSSSTTCEECSEEECCTTTCSBHHHHHHHHHHHHHSSCCSEEEEE----EEEEESSS
T ss_pred             cEEEEEEEEEeCCCcEEEEEECcCCCCCCCEECCccccCCCCCcCHHHHHHHHHHHHHCCCCCceeeE----EEeCCCcc
Confidence            45555555  444448999998754  3899999999999  99999999999999999987543321    12222221


Q ss_pred             hhhhcccccCCcccCc-eeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHh--h--cchHH-HHHHHhhhhh
Q 026407          145 VKQKLNRRWGTNYKGQ-AQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLER--V--RKPCG-LIFRYFSPFC  218 (239)
Q Consensus       145 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~--~--~~~~~-~~~~~l~~~~  218 (239)
                      .          . .+. ....|.+.+...  ....     ..+|+.++.|++++++...  .  .+.+. .++..++..+
T Consensus        99 ~----------~-~~~~~~~~y~a~~~~~--~~~~-----~~~e~~~~~W~~~~el~~~~l~~dh~~il~~a~~rlr~kl  160 (240)
T 3gz5_A           99 D----------A-RGWSVTVCYTALMSYQ--ACQI-----QIASVSDVKWWPLADVLQMPLAFDHLQLIEQARERLTQKA  160 (240)
T ss_dssp             S----------T-TSCEEEEEEEEECCHH--HHHH-----HHTTCTTEEEEEHHHHTTSCCSTTHHHHHHHHHHHHHHHH
T ss_pred             C----------C-CceEEEEEEEEEeccc--ccCC-----CCCcccceEEecHHHcccCCcchhHHHHHHHHHHHHHHhc
Confidence            0          0 011 122333333322  1111     1237789999999999742  2  34444 5666665543

>3e57_A Uncharacterized protein TM1382; structural genomics, nudix hydrolase, PSI-2, protein structure initiative; 1.89A {Thermotoga maritima}

Probab=99.65  E-value=4e-16  Score=128.42  Aligned_cols=130  Identities=15%  Similarity=0.166  Sum_probs=77.4

Q ss_pred             CCCceeeEEEEEEeCCCCEEEEEEecCCC------CcEEc-CceecCCCCC------HHHHHHHHHHHHhCCccceeeec
Q 026407           66 PDGYRRNVGICLINSSKKKIFAATRIHIP------YTWQM-PQGGADEGED------LINAALRELREETGVTSAEFLAE  132 (239)
Q Consensus        66 ~~~~~~~v~v~i~~~~~~~vLl~~r~~~~------~~w~~-PgG~ve~gEs------~~~aa~REl~EEtGl~~~~~~~~  132 (239)
                      ...++..+..+++..++ ++|+.+|...+      |.|.+ |||++|+|||      +++||+||++||||+++..+...
T Consensus        63 d~~~~q~i~~~II~~~g-rvLl~~R~~~~~e~~~~g~w~~gPGGhVE~GEs~~p~EtleeAa~REl~EEtGl~v~~~~~i  141 (211)
T 3e57_A           63 DETTKQVIPYVVIMDGD-RVLITKRTTKQSEKRLHNLYSLGIGGHVREGDGATPREAFLKGLEREVNEEVDVSLRELEFL  141 (211)
T ss_dssp             CTTEEEEEEEEEEEETT-EEEEEEC------------CBSSEECCCBGGGCSSHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCcccceEEEEEEEECC-EEEEEEECCCCCcccccCCcccccceEEeCCCCCCchhhHHHHHHHHHHHHhCCeeeccEEE
Confidence            34577777777777766 99999997543      68999 9999999998      49999999999999986433211


Q ss_pred             cCceeeecCchhhhhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh-cch-HH-H
Q 026407          133 TPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV-RKP-CG-L  209 (239)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~-~~~-~~-~  209 (239)
                        ....+.....              +.....++|.+.....  ..     .+.|..+++|+++++|.++. .-+ -- .
T Consensus       142 --g~~~~~~~~~--------------~~~~l~~~f~~~~~~g--~~-----~~~E~~~~~W~~~~eL~~~~~~le~wS~l  198 (211)
T 3e57_A          142 --GLINSSTTEV--------------SRVHLGALFLGRGKFF--SV-----KEKDLFEWELIKLEELEKFSGVMEGWSKI  198 (211)
T ss_dssp             --EEEECCSSHH--------------HHTEEEEEEEEEEEEE--EE-----SCTTTCEEEEEEHHHHHHHGGGCCHHHHH
T ss_pred             --EEEeccCCCC--------------CeEEEEEEEEEEeCCc--ee-----CCCCeEEEEEEEHHHHHHhHhhccchhHH
Confidence              1222211110              0011112222222111  12     12367899999999999984 211 12 5


Q ss_pred             HHHHhhhhhc
Q 026407          210 IFRYFSPFCL  219 (239)
Q Consensus       210 ~~~~l~~~~~  219 (239)
                      +++.+.+|+.
T Consensus       199 vl~~l~~~~~  208 (211)
T 3e57_A          199 SAAVLLNLFL  208 (211)
T ss_dssp             HHHHHHHHC-
T ss_pred             HHHHHHHHHh
Confidence            6667766654

>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}

Probab=99.65  E-value=1.1e-15  Score=133.93  Aligned_cols=116  Identities=16%  Similarity=0.222  Sum_probs=71.0

Q ss_pred             ceeeEEEEEEeCCCCEEEEEEecCC--CCcEEcCceecCCCCCHHHHHHHHHHHHhCCcccee--eeccCceeeecCchh
Q 026407           69 YRRNVGICLINSSKKKIFAATRIHI--PYTWQMPQGGADEGEDLINAALRELREETGVTSAEF--LAETPYWLTYDFPLK  144 (239)
Q Consensus        69 ~~~~v~v~i~~~~~~~vLl~~r~~~--~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~--~~~~~~~~~~~~~~~  144 (239)
                      .+.+|++++++ ++ ++||++|...  +|.|++|||++|+|||+++||+||++||||+++...  .+.......+.+++.
T Consensus       202 ~~~~v~~vi~~-~~-~vLL~~r~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~  279 (341)
T 2qjo_A          202 TFITTDAVVVQ-AG-HVLMVRRQAKPGLGLIALPGGFIKQNETLVEGMLRELKEETRLKVPLPVLRGSIVDSHVFDAPGR  279 (341)
T ss_dssp             CEEEEEEEEEE-TT-EEEEEECCSSSSTTCEECSEEECCTTSCHHHHHHHHHHHHHCCSSCHHHHHHTEEEEEEECCTTS
T ss_pred             CceEEEEEEEe-CC-EEEEEEecCCCCCCeEECCCCcCCCCCCHHHHHHHHHhhhhCCccccccccccccceEEEeCCCC
Confidence            34566666664 45 8999998754  389999999999999999999999999999987422  211111223443331


Q ss_pred             hhhhcccccCCcccC-ceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHh
Q 026407          145 VKQKLNRRWGTNYKG-QAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLER  202 (239)
Q Consensus       145 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~  202 (239)
                      .           ..+ ....+|++......  ..   ...+++|+.+++|++++++.++
T Consensus       280 ~-----------~~~~~~~~~f~~~~~~~~--~~---~~~~~~e~~~~~W~~~~el~~~  322 (341)
T 2qjo_A          280 S-----------LRGRTITHAYFIQLPGGE--LP---AVKGGDDAQKAWWMSLADLYAQ  322 (341)
T ss_dssp             C-----------TTSCEEEEEEEEECCSSS--CC---CCC------CEEEEEHHHHHHT
T ss_pred             C-----------CCCcEEEEEEEEEecCCC--cC---ccCCCCceeeEEEeeHHHHhhh
Confidence            1           011 12344555443221  10   1123458899999999999986

>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum}

Probab=99.64  E-value=1.5e-15  Score=120.35  Aligned_cols=55  Identities=25%  Similarity=0.413  Sum_probs=43.0

Q ss_pred             eEEEEEEeCCCCEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCcccee
Q 026407           72 NVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEF  129 (239)
Q Consensus        72 ~v~v~i~~~~~~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~  129 (239)
                      .+++++++.++ ++||++|..  |.|.+|||++|+|||+++||+||++||||+++..+
T Consensus        17 ~~~~~ii~~~~-~vLL~~r~~--g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~   71 (163)
T 3f13_A           17 RRATAIIEMPD-GVLVTASRG--GRYNLPGGKANRGELRSQALIREIREETGLRINSM   71 (163)
T ss_dssp             EEEEEECEETT-EEEEEECC-----BBCSEEECCTTCCHHHHHHHHHHHHHCCCCCEE
T ss_pred             EEEEEEEEeCC-EEEEEEECC--CeEECCceeCCCCCCHHHHHHHHHHHHHCccccee
Confidence            33444445555 899888864  89999999999999999999999999999997543

>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}

Probab=99.64  E-value=3e-15  Score=132.99  Aligned_cols=137  Identities=15%  Similarity=0.156  Sum_probs=80.4

Q ss_pred             CCCCEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhhhcccccCCcccC
Q 026407           80 SSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKG  159 (239)
Q Consensus        80 ~~~~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (239)
                      .++.+|||++|.. .|.|+||||++|+|||+++||+||++||||+++......  ....+.+++... .....+......
T Consensus        35 ~~~~~vLLv~r~~-~g~W~lPgG~ve~gEs~~~AA~REl~EEtGl~~~~~~~l--~~~~~~~~~~g~-~~~~~~~~~~~~  110 (364)
T 3fjy_A           35 LDSIEVCIVHRPK-YDDWSWPKGKLEQNETHRHAAVREIGEETGSPVKLGPYL--CEVEYPLSEEGK-KTRHSHDCTADT  110 (364)
T ss_dssp             HTTEEEEEEEETT-TTEEECCEEECCTTCCHHHHHHHHHHHHHSCCEEEEEEE--EEEC---------------------
T ss_pred             CCceEEEEEEcCC-CCCEECCcCCCCCCCCHHHHHHHHHHHHhCCeeeecccc--ceEEEeccCCCc-ccccccccccCc
Confidence            3444899999865 389999999999999999999999999999987432211  112222221100 000000000112


Q ss_pred             ceeEEEEEEEccccceec----ccCC-CCCCCccceeEEeCHhHHHHhhcchHH-HHHHHhhhhhcC
Q 026407          160 QAQKWFLFKFTGKEEEIN----LLGD-GSEKPEFNEWRWMFPEQVLERVRKPCG-LIFRYFSPFCLA  220 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~----~~~~-~~~~~E~~~~~Wv~~eel~~~~~~~~~-~~~~~l~~~~~~  220 (239)
                      ....+|++........+.    +.+. ..+.+|+.+++|++++++.++...+.. .+++.+..++..
T Consensus       111 ~~~~~f~~~~~~~~~~~~l~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~r~il~~~~~~l~~  177 (364)
T 3fjy_A          111 KHTLYWMAQPISADDAEHLLDAFGPVHRADVGEINDIVWVSVREARKILSHSTDKDTLAVFVDRVQE  177 (364)
T ss_dssp             -CEEEEEEEECCHHHHHTTHHHHCCCCCCCTTTCCEEEEEEHHHHHHHCSCHHHHHHHHHHHHHHHT
T ss_pred             eEEEEEEEEecCCccccccccccCccccCCccceeeeecCcHHHHHHHhcchhhHHHHHHHHHHhcc
Confidence            345666666554321000    1111 234568999999999999998855555 677777666654

>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B

Probab=99.63  E-value=2.7e-15  Score=132.17  Aligned_cols=117  Identities=19%  Similarity=0.241  Sum_probs=75.0

Q ss_pred             ceeeEEEEEEeCCCCEEEEEEecCC--CCcEEcCceecCCCCCHHHHHHHHHHHHhCCcccee--eeccCceeeecCchh
Q 026407           69 YRRNVGICLINSSKKKIFAATRIHI--PYTWQMPQGGADEGEDLINAALRELREETGVTSAEF--LAETPYWLTYDFPLK  144 (239)
Q Consensus        69 ~~~~v~v~i~~~~~~~vLl~~r~~~--~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~--~~~~~~~~~~~~~~~  144 (239)
                      .+.+|++++++ ++ ++||++|...  +|.|++|||++|+|||+++||+||++||||+++...  .+.......+.+++.
T Consensus       207 ~~~~v~~vv~~-~~-~vLL~~r~~~~~~g~w~lPgG~ve~gEt~~~aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~~  284 (352)
T 2qjt_B          207 NFVTVDALVIV-ND-HILMVQRKAHPGKDLWALPGGFLECDETIAQAIIRELFEETNINLTHEQLAIAKRCEKVFDYPDR  284 (352)
T ss_dssp             EEEEEEEEEEE-TT-EEEEEEESSSSSTTCEECSEEECCTTSCHHHHHHHHHHHHHCCSCCHHHHHHHEEEEEEECCTTS
T ss_pred             CceEEEEEEEE-CC-EEEEEEEcCCCCCCeEECCCCcCCCCCCHHHHHHHHHHHhhCCCcccchhcceeeeeEEecCCCC
Confidence            34556666664 45 8999988754  389999999999999999999999999999987421  111111223444331


Q ss_pred             hhhhcccccCCcccC-ceeEEEEEEEccccceecccCCCCCCCccceeEEeCH-hHHHHh
Q 026407          145 VKQKLNRRWGTNYKG-QAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFP-EQVLER  202 (239)
Q Consensus       145 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~-eel~~~  202 (239)
                      .           ..+ .....|++.+.......    ...+.+|+.+++|+++ +++.++
T Consensus       285 ~-----------~~~~~~~~~f~~~~~~~~~~~----~~~~~~E~~~~~W~~~~~el~~~  329 (352)
T 2qjt_B          285 S-----------VRGRTISHVGLFVFDQWPSLP----EINAADDAKDVKWISLGSNIKNI  329 (352)
T ss_dssp             C-----------TTSEEEEEEEEEEECSCSSCC----CCCCCTTEEEEEEEESSHHHHHT
T ss_pred             C-----------CCccEEEEEEEEEEeCCCCCC----ccCCCccceEEEEecHHHHHHhh
Confidence            1           001 12334555543321001    1123468899999999 999986

>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6

Probab=99.57  E-value=1.5e-14  Score=123.82  Aligned_cols=108  Identities=21%  Similarity=0.295  Sum_probs=68.6

Q ss_pred             eeeEEEEEEe--CC--CCEEEEEEecCCC--CcEEcCceecCCCCCHHHHHHHHHHHHhCCccc--eeeeccCceeeecC
Q 026407           70 RRNVGICLIN--SS--KKKIFAATRIHIP--YTWQMPQGGADEGEDLINAALRELREETGVTSA--EFLAETPYWLTYDF  141 (239)
Q Consensus        70 ~~~v~v~i~~--~~--~~~vLl~~r~~~~--~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~--~~~~~~~~~~~~~~  141 (239)
                      ..+|.++|+.  .+  +.+|||++|...+  |.|.+|||++|+|||+++||+||++||||+++.  .+.    ....+..
T Consensus        39 ~v~v~~vv~~~~~~~~~~~VLLv~R~~~p~~g~W~lPGG~ve~gEs~~~AA~REl~EEtGl~v~~~~l~----~l~~~~~  114 (273)
T 2fml_A           39 SLTVDMVLLCYNKEADQLKVLLIQRKGHPFRNSWALPGGFVNRNESTEDSVLRETKEETGVVISQENIE----QLHSFSR  114 (273)
T ss_dssp             EEEEEEEEEEEETTTTEEEEEEEEECSSSSTTCEECCEEECCTTSCHHHHHHHHHHHHHCCCCCGGGEE----EEEEECC
T ss_pred             ceEEEEEEEEEcCCCCCcEEEEEEccCCCCCCcEECCccCCCCCcCHHHHHHHHHHHHHCCCCCcCcEE----EEEEEcC
Confidence            3456555553  32  3389999987643  899999999999999999999999999997652  232    1223333


Q ss_pred             chhhhhhcccccCCcccC-ceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHH
Q 026407          142 PLKVKQKLNRRWGTNYKG-QAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVL  200 (239)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~  200 (239)
                      +...           ..+ .....|++.+....        ....+|..++.|++++++.
T Consensus       115 ~~r~-----------~~~~~~~~~y~a~~~~~~--------~~~~~E~~~~~W~~~~e~~  155 (273)
T 2fml_A          115 PDRD-----------PRGWVVTVSYLAFIGEEP--------LIAGDDAKEVHWFNLERHG  155 (273)
T ss_dssp             TTSS-----------TTSSEEEEEEEEECCCCC--------CCCCTTEEEEEEEEEEEET
T ss_pred             CCCC-----------CCceEEEEEEEEEeCCCC--------CCCCcceeeEEEEEhhHhh
Confidence            3211           001 12334444333221        1234588899999999753

>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A*

Probab=99.54  E-value=9.4e-14  Score=116.37  Aligned_cols=116  Identities=19%  Similarity=0.266  Sum_probs=74.7

Q ss_pred             CceeeEEEEEEeCCCCEEEEEEecCC----CCcEEcC-ceecCCC------CC---HHHHHHHHHHHHhCCcccee----
Q 026407           68 GYRRNVGICLINSSKKKIFAATRIHI----PYTWQMP-QGGADEG------ED---LINAALRELREETGVTSAEF----  129 (239)
Q Consensus        68 ~~~~~v~v~i~~~~~~~vLl~~r~~~----~~~w~~P-gG~ve~g------Es---~~~aa~REl~EEtGl~~~~~----  129 (239)
                      .++.++.+++++.++ ++||++|...    +|.|.+| ||+++.|      |+   +++||+||++||||+++..+    
T Consensus        57 ~~h~av~v~v~~~~g-~lLLq~R~~~k~~~pg~W~~p~gG~v~~Ge~E~~~E~~~~~~~Aa~REl~EElGi~~~~v~~~~  135 (235)
T 2dho_A           57 LLHRAFSVFLFNTEN-KLLLQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDALGVRRAAQRRLKAELGIPLEEVPPEE  135 (235)
T ss_dssp             CCEEEEEEEEECTTC-CEEEEEECTTCSSSTTCEESSEEECCBSSHHHHCCGGGHHHHHHHHHHHHHHHCCCGGGSCGGG
T ss_pred             ceEEEEEEEEEcCCC-EEEEEEecCcCCCCCCcEEeccCceecCCCcccccccchhHHHHHHHHHHHHHCCCccccChhh
Confidence            367788888998877 8999999643    4899999 5999999      87   59999999999999986422    


Q ss_pred             -eeccCceeeecCchhhhhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh
Q 026407          130 -LAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV  203 (239)
Q Consensus       130 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~  203 (239)
                       ....  .+.|..+..      ..|   ......++|.+..  . ..+..     ..+|+.+++|++++++.+++
T Consensus       136 l~~l~--~~~y~~~~~------~~~---~~~e~~~vf~~~~--~-~~~~~-----~~~Ev~~~~wv~~~el~~~l  191 (235)
T 2dho_A          136 INYLT--RIHYKAQSD------GIW---GEHEIDYILLVRM--N-VTLNP-----DPNEIKSYCYVSKEELKELL  191 (235)
T ss_dssp             SEEEE--EEEEEEECS------SSB---EEEEEEEEEEEEC--C-CCCCC-----CTTTEEEEEEECHHHHHHHH
T ss_pred             cEEEE--EEEEeccCC------Ccc---ceeEEEEEEEEEE--C-CCCcC-----ChHHEEEEEEEcHHHHHHHH
Confidence             1111  111221110      000   0011123333332  1 12222     34599999999999999876

>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens}

Probab=99.52  E-value=1.1e-13  Score=116.72  Aligned_cols=116  Identities=17%  Similarity=0.217  Sum_probs=74.9

Q ss_pred             CceeeEEEEEEeCCCCEEEEEEecCC----CCcEEcCc-eecCCC------CCH---HHHHHHHHHHHhCCcccee----
Q 026407           68 GYRRNVGICLINSSKKKIFAATRIHI----PYTWQMPQ-GGADEG------EDL---INAALRELREETGVTSAEF----  129 (239)
Q Consensus        68 ~~~~~v~v~i~~~~~~~vLl~~r~~~----~~~w~~Pg-G~ve~g------Es~---~~aa~REl~EEtGl~~~~~----  129 (239)
                      .++.++.+++++.++ ++||++|...    +|.|.+|+ |++++|      |++   ++||+||++||||+++..+    
T Consensus        68 ~~h~av~v~v~~~~g-~lLLqrRs~~K~~~pG~W~~p~gG~v~~G~~E~~~Et~~~~~eAA~REl~EElGi~~~~v~~~~  146 (246)
T 2pny_A           68 LLHRAFSVVLFNTKN-RILIQQRSDTKVTFPGYFTDSCSSHPLYNPAELEEKDAIGVRRAAQRRLQAELGIPGEQISPED  146 (246)
T ss_dssp             CCEEEEEEEEECTTC-CEEEEEECTTCSSSTTCBCCSEEECCBSSHHHHCCGGGHHHHHHHHHHHHHHHCCCTTTCCGGG
T ss_pred             cEEEEEEEEEEeCCC-EEEEEEecCCCCCCCCceEeccCceeccCCcccccccchhHHHHHHHHHHHHHCCCccccCccc
Confidence            467788888898877 8999999643    58999995 999999      886   9999999999999986422    


Q ss_pred             -eeccCceeeecCchhhhhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh
Q 026407          130 -LAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV  203 (239)
Q Consensus       130 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~  203 (239)
                       ....  .+.|..+..          ..+ +.....++|.+... ..+..     ..+|+.+++|++++++.+++
T Consensus       147 l~~l~--~~~y~~~~~----------~~~-~~~e~~~vf~~~~~-~~~~~-----~~~Ev~~~~wv~~eel~~~l  202 (246)
T 2pny_A          147 IVFMT--IYHHKAKSD----------RIW-GEHEICYLLLVRKN-VTLNP-----DPSETKSILYLSQEELWELL  202 (246)
T ss_dssp             SEEEE--EEEEEEESS----------SSB-EEEEEEEEEEEECC-CCCCC-----CTTTEEEEEEECHHHHHHHH
T ss_pred             cEEEE--EEEEEecCC----------Cce-eeeEEEEEEEEEEC-CCCCC-----ChHHeeEEEEEeHHHHHHHH
Confidence             1111  111221110          000 11112223333321 12222     34599999999999999876

>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold, hydrolase; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB: 2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A*

Probab=99.49  E-value=1.7e-14  Score=119.03  Aligned_cols=48  Identities=25%  Similarity=0.302  Sum_probs=42.1

Q ss_pred             EeCCCCEEEEEEecCCCCcEEcCceecCCCC-CHHHHHHHHHHHHhCCccce
Q 026407           78 INSSKKKIFAATRIHIPYTWQMPQGGADEGE-DLINAALRELREETGVTSAE  128 (239)
Q Consensus        78 ~~~~~~~vLl~~r~~~~~~w~~PgG~ve~gE-s~~~aa~REl~EEtGl~~~~  128 (239)
                      ++.++ ++||++|.  +|.|+||||++|+|| |+++||+||++||||+++..
T Consensus        52 ~~~~~-~vLl~~r~--~g~w~~PGG~ve~gE~t~~~aa~REl~EEtGl~~~~  100 (212)
T 1u20_A           52 VPIRR-VLLMMMRF--DGRLGFPGGFVDTRDISLEEGLKRELEEELGPALAT  100 (212)
T ss_dssp             EECCE-EEEEEEET--TSCEECSEEEECTTTSCHHHHHHHHHHHHHCGGGGG
T ss_pred             EecCC-EEEEEEeC--CCeEECCCcccCCCCCCHHHHHHHHHHHHHCCCccc
Confidence            45555 89999984  599999999999999 99999999999999998753

>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A*

Probab=99.46  E-value=2.4e-13  Score=117.35  Aligned_cols=41  Identities=29%  Similarity=0.434  Sum_probs=38.5

Q ss_pred             EEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCc
Q 026407           84 KIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVT  125 (239)
Q Consensus        84 ~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~  125 (239)
                      ++||++|... |.|.+|||++|+||++++||+||++||||+.
T Consensus       140 ~vLl~~r~~~-g~W~lPGG~Ve~GEs~~eAA~REl~EETGl~  180 (292)
T 1q33_A          140 QFVAIKRKDC-GEWAIPGGMVDPGEKISATLKREFGEEALNS  180 (292)
T ss_dssp             EEEEEECTTT-CSEECCCEECCTTCCHHHHHHHHHHHHHSCG
T ss_pred             EEEEEEecCC-CcEeCCCcccCCCCCHHHHHHHHHHHHhCCc
Confidence            6999998764 8999999999999999999999999999998

>3qsj_A Nudix hydrolase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Alicyclobacillus acidocaldarius subsp}

Probab=99.44  E-value=9.6e-13  Score=109.92  Aligned_cols=58  Identities=29%  Similarity=0.412  Sum_probs=48.2

Q ss_pred             ceeeEEEEEEeCC--C-CEEEEEEecCC----CCcEEcCceecCCCCC--------------------HHHHHHHHHHHH
Q 026407           69 YRRNVGICLINSS--K-KKIFAATRIHI----PYTWQMPQGGADEGED--------------------LINAALRELREE  121 (239)
Q Consensus        69 ~~~~v~v~i~~~~--~-~~vLl~~r~~~----~~~w~~PgG~ve~gEs--------------------~~~aa~REl~EE  121 (239)
                      .|+++++++++.+  + .+|||.+|...    +|.|.||||++|++|+                    +.+||+||++||
T Consensus         7 ~r~aA~lill~~~~~g~~~vLl~~R~~~~~~~~g~~~fPGG~vd~~d~~~~~~~~g~~~~~~~~~~~a~~~aAiRE~~EE   86 (232)
T 3qsj_A            7 IRKAATLVVIRDGANKDIEVLVVRRAKTMRFLPGFVAFPGGAADPSDAEMAKRAFGRPVCAEDDDDPALAVTALRETAEE   86 (232)
T ss_dssp             EEEEEEEEEEEECGGGCEEEEEEEECTTCSSSTTCEECSEEECCHHHHHHHHTCBSCCBTCCSTTHHHHHHHHHHHHHHH
T ss_pred             CcceEEEEEEEcCCCCCeEEEEEEccCCCCCCCCcEECCceeEecCCCCchhhhcccccccccchhhHHHHHHHHHHHHH
Confidence            6777777776543  2 48999999754    4899999999999986                    599999999999


Q ss_pred             hCCcc
Q 026407          122 TGVTS  126 (239)
Q Consensus       122 tGl~~  126 (239)
                      ||+..
T Consensus        87 ~Gl~l   91 (232)
T 3qsj_A           87 IGWLL   91 (232)
T ss_dssp             HSCCC
T ss_pred             hCcee
Confidence            99986

>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170}

Probab=99.40  E-value=2.3e-12  Score=111.31  Aligned_cols=121  Identities=17%  Similarity=0.173  Sum_probs=77.5

Q ss_pred             ceeeEEEEEEeCCC--CEEEEEEecCC----CCcE-EcCceecCCCCCHHHHHHHHHHHHhCCccceeee-ccCceeeec
Q 026407           69 YRRNVGICLINSSK--KKIFAATRIHI----PYTW-QMPQGGADEGEDLINAALRELREETGVTSAEFLA-ETPYWLTYD  140 (239)
Q Consensus        69 ~~~~v~v~i~~~~~--~~vLl~~r~~~----~~~w-~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~-~~~~~~~~~  140 (239)
                      .+..|-+.+++.++  .++||+||...    ||+| .+++|++++||++++||+||+.||+|++...+.. .....++|.
T Consensus       117 ~~~~vh~~~~~~~~~~~~lll~rRs~~K~~~PG~wd~svaG~i~~GEs~~eaA~REl~EElGI~~~~~~~l~~~g~i~y~  196 (300)
T 3dup_A          117 RAYGVHLNGYVGAGADLHLWIGRRSPDKSVAPGKLDNMVAGGQPADLSLRQNLIKECAEEADLPEALARQAIPVGAITYC  196 (300)
T ss_dssp             CEEEEEEEEEESCGGGCEEEEEEECTTCSSSTTCEEESEEEECCTTSCHHHHHHHHHHHHHCCCHHHHTTCEEEEEEEEE
T ss_pred             EEEEEEEEEEEecCCeeEEEEEeCCCcccCCCCccccccccCCCCCCCHHHHHHHHHHHHhCCChhhhhhccccceEEEE
Confidence            55677777777654  38999999643    5999 6999999999999999999999999998632210 001122332


Q ss_pred             CchhhhhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhcc
Q 026407          141 FPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRK  205 (239)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~  205 (239)
                      +...          .++  +....++|.+.... +..+   ...++|+.+++|++++|+.+++..
T Consensus       197 ~~~~----------~G~--~~E~~~vy~~~l~~-~~~p---~~~~~EV~~~~~v~~~El~~~l~~  245 (300)
T 3dup_A          197 MESP----------AGI--KPDTLFLYDLALPE-DFRP---HNTDGEMADFMLWPAAKVVEAVRT  245 (300)
T ss_dssp             EEET----------TEE--EEEEEEEEEEECCT-TCCC---CCTTSSEEEEEEEEHHHHHHHHHH
T ss_pred             EecC----------CCe--EEEEEEEEEEEecC-CCcC---CCCchHhheEEEECHHHHHHHHhc
Confidence            2110          011  12233444333221 1111   124569999999999999998744

>2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA turnover, structural genomic consortium, SGC; HET: IMP; 1.72A {Homo sapiens} PDB: 3cou_A 3mgm_A

Probab=99.32  E-value=1.6e-12  Score=107.52  Aligned_cols=101  Identities=20%  Similarity=0.143  Sum_probs=61.1

Q ss_pred             EEEEEEecCCCCcEEcCceecCCCC-CHHHHHHHHHHHHhCCcccee-eeccCceeeecCchhhhhhcccccCCcccCce
Q 026407           84 KIFAATRIHIPYTWQMPQGGADEGE-DLINAALRELREETGVTSAEF-LAETPYWLTYDFPLKVKQKLNRRWGTNYKGQA  161 (239)
Q Consensus        84 ~vLl~~r~~~~~~w~~PgG~ve~gE-s~~~aa~REl~EEtGl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (239)
                      ++|++.|.  +|.|+||||++|+|| |+++||+||++||||+++... +.....+..+..              ......
T Consensus        66 ~~ll~~r~--~g~w~lPGG~ve~gE~t~~eaa~REl~EEtGl~~~~~~l~~l~~~~~~~~--------------~~~~~~  129 (217)
T 2xsq_A           66 AILMQMRF--DGRLGFPGGFVDTQDRSLEDGLNRELREELGEAAAAFRVERTDYRSSHVG--------------SGPRVV  129 (217)
T ss_dssp             EEEEEEET--TSCEECSEEECCTTCSSHHHHHHHHHHHHHCGGGGGCCCCGGGEEEEEEC--------------SSSSEE
T ss_pred             cEEEEEcc--CCeEECCceecCCCCCCHHHHHHHHHHHHHCCCCccceeEEEEEEeecCC--------------CCCeEE
Confidence            46666665  489999999999999 999999999999999987521 111111222111              001223


Q ss_pred             eEEEEEEEccccce-ec--ccCCCCCCCccceeEEeCHhHHH
Q 026407          162 QKWFLFKFTGKEEE-IN--LLGDGSEKPEFNEWRWMFPEQVL  200 (239)
Q Consensus       162 ~~~~~~~~~~~~~~-~~--~~~~~~~~~E~~~~~Wv~~eel~  200 (239)
                      ..+|...+...... ..  ........+|..++.|++++++.
T Consensus       130 ~~~f~~~l~~~~~~~~e~~~~~~~~~~~E~~~v~~vPl~~l~  171 (217)
T 2xsq_A          130 AHFYAKRLTLEELLAVEAGATRAKDHGLEVLGLVRVPLYTLR  171 (217)
T ss_dssp             EEEEEEECCHHHHHHHHHHGGGSTTBTTTEEEEEECCCSBCT
T ss_pred             EEEEEEEeccccceecccccccccccCCceeeEEEEEHHHhh
Confidence            44555554432110 00  00011224588999999999987

>3kvh_A Protein syndesmos; NUDT16-like, NUDT16L1, nudix, RNA regulation, RNA structural genomics consortium, SGC, RNA degradation, RNA B protein; 1.70A {Homo sapiens}

Probab=99.00  E-value=1.3e-10  Score=93.17  Aligned_cols=56  Identities=18%  Similarity=0.192  Sum_probs=44.9

Q ss_pred             CCceeeEEEEEEeCCCC----------EEEEEEecCCCCcEEcCceecCCCC-CHHHHHHHHHHHHhCC
Q 026407           67 DGYRRNVGICLINSSKK----------KIFAATRIHIPYTWQMPQGGADEGE-DLINAALRELREETGV  124 (239)
Q Consensus        67 ~~~~~~v~v~i~~~~~~----------~vLl~~r~~~~~~w~~PgG~ve~gE-s~~~aa~REl~EEtGl  124 (239)
                      .+++.++-+++..++..          .+|++.|.+  |.|+||||+||+|| |+++|+.||+.||+|+
T Consensus        18 ~~~~hach~mlya~~~~~lfg~~p~r~~iLmQ~R~~--G~weFPGGkVe~gE~t~e~aL~REl~EElg~   84 (214)
T 3kvh_A           18 PGWSHSCHAMLYAANPGQLFGRIPMRFSVLMQMRFD--GLLGFPGGFVDRRFWSLEDGLNRVLGLGLGC   84 (214)
T ss_dssp             TTCEEEEEEEEEEEEEEEETTTEEEEEEEEEEEETT--SCEECSEEEECTTTCCHHHHHHHSCCSCC--
T ss_pred             cCccEeeEEEEEcCCccccccccchhheEEEeeeeC--CEEeCCCccCCCCCCCHHHHHHHHHHHhhCC
Confidence            45778887777655421          367788876  99999999999999 9999999999999997

>3rh7_A Hypothetical oxidoreductase; FMN-binding split barrel, nudix, structural genomics, joint for structural genomics, JCSG; HET: FMN; 3.00A {Sinorhizobium meliloti}

Probab=99.00  E-value=1.8e-09  Score=94.08  Aligned_cols=117  Identities=15%  Similarity=0.189  Sum_probs=63.6

Q ss_pred             eEEEEEEeCCCCEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHh-CCccceeeeccCceeeecCchhhhhhcc
Q 026407           72 NVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREET-GVTSAEFLAETPYWLTYDFPLKVKQKLN  150 (239)
Q Consensus        72 ~v~v~i~~~~~~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEt-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (239)
                      .|++++.+ ++ +|||+  . ..| |.+|||.++.+++  ++|+||++||| |+++. +....   --|..+.       
T Consensus       185 ~vgaii~~-~g-~vLL~--~-~~G-W~LPG~~~~~~~~--~~a~RE~~EEttGl~v~-~~~L~---~v~~~~~-------  245 (321)
T 3rh7_A          185 RLGAVLEQ-QG-AVFLA--G-NET-LSLPNCTVEGGDP--ARTLAAYLEQLTGLNVT-IGFLY---SVYEDKS-------  245 (321)
T ss_dssp             EEEEEEES-SS-CEEEB--C-SSE-EBCCEEEESSSCH--HHHHHHHHHHHHSSCEE-EEEEE---EEEECTT-------
T ss_pred             eEEEEEEE-CC-EEEEe--e-CCC-ccCCcccCCCChh--HHHHHHHHHHhcCCEEe-eceEE---EEEEcCC-------
Confidence            44445554 55 88888  2 237 9999886654444  59999999997 99973 11111   1122211       


Q ss_pred             cccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh-cchHH-HHHHHh-hhhhcCCCccccc
Q 026407          151 RRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV-RKPCG-LIFRYF-SPFCLAPFMIYLK  227 (239)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~-~~~~~-~~~~~l-~~~~~~~~~~~l~  227 (239)
                             .++...+|.+...+.              +..+++|+++++|+... ..+.. .+++.+ ++.-...|..|..
T Consensus       246 -------~~~~~i~f~~~~~~g--------------~~~e~~~f~~~elp~~~~~~~~~~~~L~~y~~e~~~g~f~i~~g  304 (321)
T 3rh7_A          246 -------DGRQNIVYHALASDG--------------APRQGRFLRPAELAAAKFSSSATADIINRFVLESSIGNFGIYFG  304 (321)
T ss_dssp             -------TCCEEEEEEEEECSS--------------CCSSSEEECHHHHTTCEESSHHHHHHHHHHHHTTSCSSCC----
T ss_pred             -------CceEEEEEEEEeCCC--------------CeeeeEEECHHHCCCcccCCHHHHHHHHHHHHHhhcCCCCceec
Confidence                   122333455544332              12679999999999865 34544 333333 3333334444544


Q ss_pred             c
Q 026407          228 E  228 (239)
Q Consensus       228 ~  228 (239)
                      +
T Consensus       305 ~  305 (321)
T 3rh7_A          305 D  305 (321)
T ss_dssp             -
T ss_pred             C
Confidence            3

>3bho_A Cleavage and polyadenylation specificity factor subunit 5; CPSF5, RNA processing, cleavage factor, diadenosine tetraphosphate, mRNA processing; HET: B4P; 1.80A {Homo sapiens} PDB: 3bap_A 3mdg_A 3mdi_A 2cl3_A 3n9u_A 3q2s_A 3q2t_A 2j8q_A 3p5t_A 3p6y_A

Probab=98.98  E-value=1.1e-09  Score=88.58  Aligned_cols=55  Identities=22%  Similarity=0.356  Sum_probs=43.7

Q ss_pred             CceeeEEEE-EEeCCC-CEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCC
Q 026407           68 GYRRNVGIC-LINSSK-KKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGV  124 (239)
Q Consensus        68 ~~~~~v~v~-i~~~~~-~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl  124 (239)
                      +.|..|.++ +++..+ .+|||.++..  +.|.+|||++|+||+.++|+.||+.||+|+
T Consensus        56 g~R~sV~avil~~~~~~phVLLlq~~~--~~f~LPGGkle~gE~~~eaL~REL~EELg~  112 (208)
T 3bho_A           56 GMRRTVEGVLIVHEHRLPHVLLLQLGT--TFFKLPGGELNPGEDEVEGLKRLMTEILGR  112 (208)
T ss_dssp             CSEEEEEEEEEEEETTEEEEEEEEEET--TEEECSEEECCTTCCHHHHHHHHHHHHHCC
T ss_pred             CCceEEEEEEEEcCCCCcEEEEEEcCC--CcEECCCcccCCCCCHHHHHHHHHHHHhCC
Confidence            345555544 444433 3799988854  799999999999999999999999999995

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	239
d1jkna_	165	d.113.1.1 (A:) Diadenosine tetraphosphate hydrolas	1e-36
d1xsba_	153	d.113.1.1 (A:) Diadenosine tetraphosphate hydrolas	6e-13
d2fvva1	135	d.113.1.1 (A:8-142) Diphosphoinositol polyphosphat	1e-12
d2a6ta2	151	d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p c	2e-12
d1ryaa_	160	d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD	3e-10
d1sjya_	158	d.113.1.1 (A:) Hypothetical protein DR1025 {Deinoc	1e-09
d1vcda1	126	d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus t	2e-08
d1k2ea_	152	d.113.1.1 (A:) Hypothetical protein PAE3301 {Archa	2e-08
d1q33a_	292	d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyr	3e-08
d2azwa1	147	d.113.1.1 (A:2-148) Hypothetical protein EF1141 {E	6e-08
d2fkba1	161	d.113.1.2 (A:8-168) Hypothetical protein YfcD {Esc	8e-07
d1u20a1	196	d.113.1.1 (A:14-209) U8 snorna-binding protein x29	3e-06
d1irya_	156	d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphospha	5e-06
d1ktga_	137	d.113.1.1 (A:) Diadenosine tetraphosphate hydrolas	1e-05
d2b0va1	146	d.113.1.1 (A:4-149) Hypothetical protein NE0184 {N	2e-05
d1hzta_	153	d.113.1.2 (A:) Isopentenyl diphosphate isomerase {	3e-05
d1vk6a2	131	d.113.1.4 (A:126-256) NADH pyrophosphatase {Escher	3e-05
d2o5fa1	162	d.113.1.2 (A:7-168) Hypothetical protein DR0079 {D	7e-05
d1g0sa_	209	d.113.1.1 (A:) ADP-ribose pyrophosphatase {Escheri	5e-04
d1vhza_	186	d.113.1.1 (A:) ADP compounds hydrolase NudE {Esche	5e-04
d2b06a1	155	d.113.1.1 (A:1-155) Hypothetical protein SP1235 (s	0.003

>d1jkna_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]} Length = 165

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]

 Score =  124 bits (313), Expect = 1e-36
 Identities = 105/161 (65%), Positives = 130/161 (80%), Gaps = 5/161 (3%)

Query: 61  STETPPDGYRRNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELRE 120
           S ++PP+GYRRNVGICL+N+  KKIFAA+R+ IP  WQMPQGG DEGED  NAA+RELRE
Sbjct: 5   SMDSPPEGYRRNVGICLMNN-DKKIFAASRLDIPDAWQMPQGGIDEGEDPRNAAIRELRE 63

Query: 121 ETGVTSAEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLG 180
           ETGVTSAE +AE PYWLTYDFP KV++KLN +WG+++KGQAQKWFLFKFTG+++EINLLG
Sbjct: 64  ETGVTSAEVIAEVPYWLTYDFPPKVREKLNIQWGSDWKGQAQKWFLFKFTGQDQEINLLG 123

Query: 181 DGSEKPEFNEWRWMFPEQVLERV----RKPCGLIFRYFSPF 217
           DGSEKPEF EW W+ PEQ+++      +     +   F+P 
Sbjct: 124 DGSEKPEFGEWSWVTPEQLIDLTVEFKKPVYKEVLSVFAPH 164

>d1xsba_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Human (Homo sapiens) [TaxId: 9606]} Length = 153

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.1 bits (150), Expect = 6e-13
 Identities = 24/138 (17%), Positives = 51/138 (36%), Gaps = 19/138 (13%)

Query: 69  YRRNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAE 128
           +RR + I  ++++  +          + W  P+G  + GED +  ALR  +EE G+ + +
Sbjct: 16  FRRCL-IPKVDNNAIEFLLLQASDGIHHWTPPKGHVEPGEDDLETALRATQEEAGIEAGQ 74

Query: 129 FLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEF 188
                 +                 +    K +   ++L +    + EI L        E 
Sbjct: 75  LTIIEGFKREL------------NYVARNKPKTVIYWLAEVKDYDVEIRL------SHEH 116

Query: 189 NEWRWMFPEQVLERVRKP 206
             +RW+  E+  +  +  
Sbjct: 117 QAYRWLGLEEACQLAQFK 134

>d2fvva1 d.113.1.1 (A:8-142) Diphosphoinositol polyphosphate phosphohydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 135

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diphosphoinositol polyphosphate phosphohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.9 bits (147), Expect = 1e-12
 Identities = 24/140 (17%), Positives = 50/140 (35%), Gaps = 24/140 (17%)

Query: 66  PDGYRRNVG-ICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGV 124
            DGY++    +C  + S++++   +    P  W +P GG +  E+   AA+RE+ EE GV
Sbjct: 7   GDGYKKRAACLCFRSESEEEVLLVSSSRHPDRWIVPGGGMEPEEEPSVAAVREVCEEAGV 66

Query: 125 TSAEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSE 184
                                  +L   +    +      ++   T   E+     +   
Sbjct: 67  KGTL------------------GRLVGIFENQERKHRTYVYVLIVTEVLEDWEDSVN--- 105

Query: 185 KPEFNEWRWMFPEQVLERVR 204
                +  W   E  ++ ++
Sbjct: 106 --IGRKREWFKIEDAIKVLQ 123

>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic domain {Schizosaccharomyces pombe [TaxId: 4896]} Length = 151

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: mRNA decapping enzyme-like
domain: mRNA decapping enzyme Dcp2p catalytic domain
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 60.9 bits (147), Expect = 2e-12
 Identities = 24/156 (15%), Positives = 51/156 (32%), Gaps = 23/156 (14%)

Query: 73  VGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAE 132
            G  +++ S ++            W  P+G  D+ E  ++ A+RE+ EETG         
Sbjct: 5   RGAIMLDMSMQQCVLVKGWKASSGWGFPKGKIDKDESDVDCAIREVYEETGFD------- 57

Query: 133 TPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWR 192
                        +   N       +GQ  + ++      +           + E ++  
Sbjct: 58  ----------CSSRINPNEFIDMTIRGQNVRLYIIPGISLDTRFESR----TRKEISKIE 103

Query: 193 WMFPEQVLERVRKPCGLIFRYFSPFCLAPFMIYLKE 228
           W     +    +     +   F  + + PF+  LK+
Sbjct: 104 WHNLMDLPTFKKNKPQTMKNKF--YMVIPFLAPLKK 137

>d1ryaa_ d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD {Escherichia coli [TaxId: 562]} Length = 160

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: GDP-mannose mannosyl hydrolase NudD
domain: GDP-mannose mannosyl hydrolase NudD
species: Escherichia coli [TaxId: 562]

 Score = 55.2 bits (132), Expect = 3e-10
 Identities = 22/131 (16%), Positives = 44/131 (33%), Gaps = 16/131 (12%)

Query: 73  VGICLINSSKKKIFAATRIHIPY--TWQMPQGGADEGEDLINAALRELREETGVTSAEFL 130
           +   + NS + +     R + P    W +P G   + E L  A  R    E G+      
Sbjct: 21  LDFIVENS-RGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITA 79

Query: 131 AETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNE 190
            +      + +           +             F+F   EEE+ L  +     + ++
Sbjct: 80  GQFYGVWQHFYD--------DNFSGTDFTTHYVVLGFRFRVSEEELLLPDE-----QHDD 126

Query: 191 WRWMFPEQVLE 201
           +RW+  + +L 
Sbjct: 127 YRWLTSDALLA 137

>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus radiodurans [TaxId: 1299]} Length = 158

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein DR1025
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 53.3 bits (127), Expect = 1e-09
 Identities = 32/159 (20%), Positives = 50/159 (31%), Gaps = 33/159 (20%)

Query: 70  RRNVGICLINSSKKKIFAATRIHIPY------TWQMPQGGADEGEDLINAALRELREETG 123
            R  G+ L+N  +  I       IP        W +P G  ++GE+  +AA+RE  EETG
Sbjct: 12  LRAAGVVLLNE-RGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETG 70

Query: 124 --VTSAEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGD 181
             V   +FL            +                     +L +    +       D
Sbjct: 71  LRVRPVKFLGAYLGRFPDGVLILR-----------------HVWLAEPEPGQTLAPAFTD 113

Query: 182 GSEKPEFNEWRWMFPEQVLERVRKPCGLIFRYFSPFCLA 220
                E  E  ++  E   +      G I  Y +    A
Sbjct: 114 -----EIAEASFVSREDFAQLYAA--GQIRMYQTKLFYA 145

>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId: 274]} Length = 126

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: AP6A hydrolase Ndx1
species: Thermus thermophilus [TaxId: 274]

 Score = 49.6 bits (118), Expect = 2e-08
 Identities = 30/134 (22%), Positives = 44/134 (32%), Gaps = 27/134 (20%)

Query: 73  VGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAE 132
            G  + N+ ++ +    R      W  P+G  + GE L  AA+RE+ EETGV  AE L  
Sbjct: 5   AGGVVFNAKREVLLLRDR---MGFWVFPKGHPEPGESLEEAAVREVWEETGVR-AEVLLP 60

Query: 133 TPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWR 192
                             R        +   WFL +  G             +       
Sbjct: 61  LYPT--------------RYVNPKGVEREVHWFLMRGEGAPR---------LEEGMTGAG 97

Query: 193 WMFPEQVLERVRKP 206
           W  PE+    +  P
Sbjct: 98  WFSPEEARALLAFP 111

>d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 152

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein PAE3301
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 49.9 bits (118), Expect = 2e-08
 Identities = 18/112 (16%), Positives = 30/112 (26%), Gaps = 15/112 (13%)

Query: 97  WQMPQGGADEGEDLINAALRELREETGVT--SAEFLAETPYWLTYDFPLKVKQKLNRRWG 154
           +  P G  +  E  I A  RE  EETG+      F          + P+ +         
Sbjct: 25  YIYPGGHVEHNETPIEAVKREFEEETGIVVEPIGFTYGIIDENAVERPMPLVI---LEEV 81

Query: 155 TNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRKP 206
             Y  +    F   +  K              +     W+   ++      P
Sbjct: 82  VKYPEETHIHFDLIYLVKRVG----------GDLKNGEWIDVREIDRIETFP 123

>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: NUDT9 (mitochondrial ADP-ribose pyrophosphatase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (120), Expect = 3e-08
 Identities = 15/110 (13%), Positives = 32/110 (29%), Gaps = 5/110 (4%)

Query: 97  WQMPQGGADEGEDLINAALRELREETGVT--SAEFLAETPYWLTYDFPLKVKQKLNRRWG 154
           W +P G  D GE +     RE  EE   +               +    +    + + + 
Sbjct: 152 WAIPGGMVDPGEKISATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVIYKGYV 211

Query: 155 TNYKGQAQKWFL---FKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLE 201
            + +     W       +  +  EI          +  + +W+     L+
Sbjct: 212 DDPRNTDNAWMETEAVNYHDETGEIMDNLMLEAGDDAGKVKWVDINDKLK 261

>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141 {Enterococcus faecalis [TaxId: 1351]} Length = 147

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein EF1141
species: Enterococcus faecalis [TaxId: 1351]

 Score = 48.3 bits (114), Expect = 6e-08
 Identities = 20/139 (14%), Positives = 41/139 (29%), Gaps = 24/139 (17%)

Query: 70  RRNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETG--VTSA 127
           R    I +       +      +    + +P G  +  E    A  RE+ EE G  V   
Sbjct: 17  RYAAYIIVSKPENNTMVLVQAPN--GAYFLPGGEIEGTETKEEAIHREVLEELGISVEIG 74

Query: 128 EFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPE 187
            +L E   +                + +N++  A     + +                  
Sbjct: 75  CYLGEADEY----------------FYSNHRQTAYYNPGYFYVANTWR----QLSEPLER 114

Query: 188 FNEWRWMFPEQVLERVRKP 206
            N   W+ PE+ +  +++ 
Sbjct: 115 TNTLHWVAPEEAVRLLKRG 133

>d2fkba1 d.113.1.2 (A:8-168) Hypothetical protein YfcD {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein YfcD
species: Escherichia coli [TaxId: 562]

 Score = 45.6 bits (107), Expect = 8e-07
 Identities = 28/170 (16%), Positives = 49/170 (28%), Gaps = 37/170 (21%)

Query: 63  ETPPDGYRRNVGICLINSSKKKIFAATRIHIPYTWQM-----PQGGADEGEDLINAALRE 117
           +      R      +++    KI    R                G     E L+ +A RE
Sbjct: 22  QMRAQCLRHRATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARRE 81

Query: 118 LREETGVTSAEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEIN 177
             EE G+                     + K  R WG  +   +                
Sbjct: 82  AEEELGIAGVP--------FAEHGQFYFEDKNCRVWGALFSCVS-----------HGPFA 122

Query: 178 LLGDGSEKPEFNEWRWMFPEQVLERVRKPCGLIFRYFSPFCLAPFMIYLK 227
           L     ++ E +E  W+ PE++  R  +        F+P  L    +++K
Sbjct: 123 L-----QEDEVSEVCWLTPEEITARCDE--------FTPDSLKALALWMK 159

>d1u20a1 d.113.1.1 (A:14-209) U8 snorna-binding protein x29 {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 196

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: U8 snorna-binding protein x29
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 44.3 bits (104), Expect = 3e-06
 Identities = 21/87 (24%), Positives = 28/87 (32%), Gaps = 14/87 (16%)

Query: 68  GYRRNVGICLINSSKKKIFAATRIHIPY----------TWQMPQGGADEGED-LINAALR 116
           GY+      L   S+ K+F   R+ I                P G  D  +  L     R
Sbjct: 18  GYKHACHALLHAPSQAKLFD--RVPIRRVLLMMMRFDGRLGFPGGFVDTRDISLEEGLKR 75

Query: 117 ELREETGVTSAEF-LAETPYWLTYDFP 142
           EL EE G   A   + E  Y  +    
Sbjct: 76  ELEEELGPALATVEVTEDDYRSSQVRE 102

>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: 7,8-dihydro-8-oxoguanine triphosphatase Hmth1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (101), Expect = 5e-06
 Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 5/74 (6%)

Query: 71  RNVGICLINSSKKKIFAATRIHIPYT--WQMPQGGADEGEDLINAALRELREETGVTSAE 128
           R   + L+    +++    +        W    G   EGE + + A REL+EE+G+T   
Sbjct: 5   RLYTLVLVLQ-PQRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDA 63

Query: 129 FLAETPYWLTYDFP 142
                   + ++F 
Sbjct: 64  L--HKVGQIVFEFV 75

>d1ktga_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Caenorhabditis elegans [TaxId: 6239]} Length = 137

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 41.4 bits (96), Expect = 1e-05
 Identities = 26/138 (18%), Positives = 48/138 (34%), Gaps = 21/138 (15%)

Query: 71  RNVGICLIN--SSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAE 128
           +  G+ +    + K +       + P+ W  P+G  D GED   AA+RE +EE  +T  +
Sbjct: 3   KAAGLVIYRKLAGKIEFLLLQASYPPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQ 62

Query: 129 FLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEF 188
                    T              +    K ++ K++L K    ++            E 
Sbjct: 63  LTIHEDCHETL------------FYEAKGKPKSVKYWLAKLNNPDDVQ-------LSHEH 103

Query: 189 NEWRWMFPEQVLERVRKP 206
             W+W   E  ++     
Sbjct: 104 QNWKWCELEDAIKIADYA 121

>d2b0va1 d.113.1.1 (A:4-149) Hypothetical protein NE0184 {Nitrosomonas europaea [TaxId: 915]} Length = 146

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein NE0184
species: Nitrosomonas europaea [TaxId: 915]

 Score = 41.3 bits (96), Expect = 2e-05
 Identities = 24/135 (17%), Positives = 38/135 (28%), Gaps = 22/135 (16%)

Query: 70  RRNVGICLINSSKKKIFAATRIHIPY--TWQMPQGGADEGEDLINAALRELREETGVTSA 127
           + NV +  +     K      I          P G  + GE +I A  RE+ EET     
Sbjct: 1   KPNVTVAAVIEQDDKYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEET----- 55

Query: 128 EFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPE 187
              +  P  LT  +           W     G     F F       + +   D      
Sbjct: 56  -GHSFLPEVLTGIYH----------WTCASNGTTYLRFTFSGQVVSFDPDRKLD----TG 100

Query: 188 FNEWRWMFPEQVLER 202
                W   +++  +
Sbjct: 101 IVRAAWFSIDEIRAK 115

>d1hzta_ d.113.1.2 (A:) Isopentenyl diphosphate isomerase {Escherichia coli [TaxId: 562]} Length = 153

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Isopentenyl diphosphate isomerase
species: Escherichia coli [TaxId: 562]

 Score = 41.0 bits (95), Expect = 3e-05
 Identities = 24/141 (17%), Positives = 41/141 (29%), Gaps = 24/141 (17%)

Query: 71  RNVGICLINSSKKKIF----AATRIHIP-YTWQMPQGGADEGEDLINAALRELREETGVT 125
                 L N+ K ++     A ++   P        G    GE   +A +R  R E GV 
Sbjct: 3   LAFSSWLFNA-KGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVE 61

Query: 126 SAEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEK 185
                +  P +              R   T+  G  +      F  +      + D    
Sbjct: 62  ITPPESIYPDF--------------RYRATDPSGIVENEVCPVFAARTTSALQINDD--- 104

Query: 186 PEFNEWRWMFPEQVLERVRKP 206
            E  +++W     VL  +   
Sbjct: 105 -EVMDYQWCDLADVLHGIDAT 124

>d1vk6a2 d.113.1.4 (A:126-256) NADH pyrophosphatase {Escherichia coli [TaxId: 562]} Length = 131

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: NADH pyrophosphatase
domain: NADH pyrophosphatase
species: Escherichia coli [TaxId: 562]

 Score = 40.5 bits (94), Expect = 3e-05
 Identities = 22/127 (17%), Positives = 32/127 (25%), Gaps = 25/127 (19%)

Query: 75  ICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETP 134
           I  I      + A    H      +  G  + GE L  A  RE+ EE+G+          
Sbjct: 7   IVAIRRDDSILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREVMEESGIK------VKN 60

Query: 135 YWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWM 194
                  P    Q L                 F       +I +        E  E  W 
Sbjct: 61  LRYVTSQPWPFPQSL--------------MTAFMAEYDSGDIVIDPK-----ELLEANWY 101

Query: 195 FPEQVLE 201
             + +  
Sbjct: 102 RYDDLPL 108

>d2o5fa1 d.113.1.2 (A:7-168) Hypothetical protein DR0079 {Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]} Length = 162

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein DR0079
species: Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]

 Score = 39.8 bits (92), Expect = 7e-05
 Identities = 21/142 (14%), Positives = 38/142 (26%), Gaps = 28/142 (19%)

Query: 69  YRRNVGICLINSSKKKIFAATRIHIPYTWQM-----PQGGADEGEDLINAALRELREETG 123
             R V   L NS + +++   R      +         G    GE    A  RE REE  
Sbjct: 27  RVRVVNAFLRNS-QGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELN 85

Query: 124 VTSAEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGS 183
           V                  +           + ++     +        +       +  
Sbjct: 86  V-----------------EIDALSWRPLASFSPFQTTLSSFMCVYELRSDATPIFNPN-- 126

Query: 184 EKPEFNEWRWMFPEQVLERVRK 205
              + +   W+ PE +L R+  
Sbjct: 127 ---DISGGEWLTPEHLLARIAA 145

>d1g0sa_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Escherichia coli [TaxId: 562]} Length = 209

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Escherichia coli [TaxId: 562]

 Score = 37.8 bits (87), Expect = 5e-04
 Identities = 20/141 (14%), Positives = 40/141 (28%), Gaps = 26/141 (18%)

Query: 73  VGICLINSSKKKIFAATRIHIP--------YTWQMPQGGADEGEDLINAALRELREETGV 124
             +   +  + ++    +I I         +  +M  G  +EGE + + A RE  EE G+
Sbjct: 60  AVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGL 119

Query: 125 TSAEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSE 184
                     +  +                +   G+          G  +E         
Sbjct: 120 IVKRTKPVLSFLASPGG--------TSERSSIMVGEVDATTASGIHGLADE--------- 162

Query: 185 KPEFNEWRWMFPEQVLERVRK 205
             E      +  EQ  + V +
Sbjct: 163 -NEDIRVHVVSREQAYQWVEE 182

>d1vhza_ d.113.1.1 (A:) ADP compounds hydrolase NudE {Escherichia coli [TaxId: 562]} Length = 186

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP compounds hydrolase NudE
species: Escherichia coli [TaxId: 562]

 Score = 37.8 bits (87), Expect = 5e-04
 Identities = 20/113 (17%), Positives = 36/113 (31%), Gaps = 22/113 (19%)

Query: 94  PYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQKLNRRW 153
            Y     +G  D GE +  AA REL+EE G  + +    T        P     K+N   
Sbjct: 73  SYELGFSKGLIDPGESVYEAANRELKEEVGFGANDL---TFLKKLSMAPSYFSSKMNIVV 129

Query: 154 GTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRKP 206
             +   ++ +                    ++PE           +++ +  P
Sbjct: 130 AQDLYPESLEG-------------------DEPEPLPQVRWPLAHMMDLLEDP 163

>d2b06a1 d.113.1.1 (A:1-155) Hypothetical protein SP1235 (spr1115) {Streptococcus pneumoniae [TaxId: 1313]} Length = 155

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein SP1235 (spr1115)
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 35.1 bits (80), Expect = 0.003
 Identities = 21/135 (15%), Positives = 41/135 (30%), Gaps = 32/135 (23%)

Query: 73  VGICLI-NSSKKKIFAATRIHIPY---TWQMPQGGADEGEDLINAALRELREETG--VTS 126
             ICLI +   +++    R         +  P G  +  E    + +RE+ EETG  + +
Sbjct: 10  TNICLIEDLETQRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEETGLTIQN 69

Query: 127 AEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKP 186
            + +    + L                          + +  +   E    L        
Sbjct: 70  PQLVGIKNWPLDTGGR---------------------YIVICYKATEFSGTLQSS----- 103

Query: 187 EFNEWRWMFPEQVLE 201
           E  E  W+  +Q+  
Sbjct: 104 EEGEVSWVQKDQIPN 118

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	239
d1jkna_	165	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.96
d1vcda1	126	AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId:	99.85
d1ktga_	137	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.83
d1vk6a2	131	NADH pyrophosphatase {Escherichia coli [TaxId: 562	99.82
d2b0va1	146	Hypothetical protein NE0184 {Nitrosomonas europaea	99.82
d1xsba_	153	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.81
d1sjya_	158	Hypothetical protein DR1025 {Deinococcus radiodura	99.81
d2a6ta2	151	mRNA decapping enzyme Dcp2p catalytic domain {Schi	99.81
d1ryaa_	160	GDP-mannose mannosyl hydrolase NudD {Escherichia c	99.8
d2fvva1	135	Diphosphoinositol polyphosphate phosphohydrolase {	99.79
d2fkba1	161	Hypothetical protein YfcD {Escherichia coli [TaxId	99.78
d1hzta_	153	Isopentenyl diphosphate isomerase {Escherichia col	99.78
d2azwa1	147	Hypothetical protein EF1141 {Enterococcus faecalis	99.77
d2fb1a2	147	Hypothetical protein BT0354, N-terminal domain {Ba	99.77
d1puna_	129	Nucleoside triphosphate pyrophosphorylase (MutT) {	99.77
d2b06a1	155	Hypothetical protein SP1235 (spr1115) {Streptococc	99.76
d1irya_	156	7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Hum	99.73
d1v8ya_	158	ADP-ribose pyrophosphatase {Thermus thermophilus [	99.73
d2o5fa1	162	Hypothetical protein DR0079 {Deinococcus radiodura	99.73
d1k2ea_	152	Hypothetical protein PAE3301 {Archaeon Pyrobaculum	99.71
d1nqza_	187	Coenzyme A pyrophosphatase {Deinococcus radioduran	99.71
d1mqea_	202	ADP-ribose pyrophosphatase {Mycobacterium tubercul	99.7
d1vhza_	186	ADP compounds hydrolase NudE {Escherichia coli [Ta	99.68
d1g0sa_	209	ADP-ribose pyrophosphatase {Escherichia coli [TaxI	99.67
d2fmla2	202	Hypothetical protein EF2700, N-terminal domain {En	99.67
d1rrqa2	127	Adenine glycosylase MutY, C-terminal domain {Bacil	99.58
d1viua_	189	ADP-ribose pyrophosphatase homologue YffH {Escheri	99.52
d1q33a_	292	NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {	99.42
d1u20a1	196	U8 snorna-binding protein x29 {African clawed frog	99.42
d1x51a1	142	A/G-specific adenine DNA glycosylase {Human (Homo	99.38

>d1jkna_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]

Probab=99.96  E-value=3.2e-28  Score=192.16  Aligned_cols=158  Identities=68%  Similarity=1.230  Sum_probs=123.7

Q ss_pred             cCCCCCCCCceeeEEEEEEeCCCCEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeee
Q 026407           60 LSTETPPDGYRRNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTY  139 (239)
Q Consensus        60 ~~~~~~~~~~~~~v~v~i~~~~~~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~  139 (239)
                      .+|..++.+||+.|+++|+|+++ +|||++|...+|.|.+|||+||.|||+++||.||++||||+++..+..........
T Consensus         4 ~~~~~~~~~yR~~Vg~vI~n~~~-~vLL~kR~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGl~~~~~~~~~~~~~~~   82 (165)
T d1jkna_           4 GSMDSPPEGYRRNVGICLMNNDK-KIFAASRLDIPDAWQMPQGGIDEGEDPRNAAIRELREETGVTSAEVIAEVPYWLTY   82 (165)
T ss_dssp             CCCSSCCSSEEEEEEEEEECTTS-CEEEEEESSSTTCEECCEECCCTTCCHHHHHHHHHHHHTCCCSEEEEEECSSCEEE
T ss_pred             CccCCCCCCccccEEEEEEeCCC-EEEEEEEcCCCCcccCccceEcCCCChhHHHHHHHHHhhccccccccccccccccc
Confidence            35666777899999999999888 99999998878999999999999999999999999999999985544333344444


Q ss_pred             cCchhhhhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh---cchHH-HHHHHhh
Q 026407          140 DFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV---RKPCG-LIFRYFS  215 (239)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~---~~~~~-~~~~~l~  215 (239)
                      .++..........+...+..+...+|.+.+.+...++++..+..+..|+.+++|++++++.+..   ++++| ++++++.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~E~~~~~W~~~~el~~~i~~fk~~v~~~~l~~f~  162 (165)
T d1jkna_          83 DFPPKVREKLNIQWGSDWKGQAQKWFLFKFTGQDQEINLLGDGSEKPEFGEWSWVTPEQLIDLTVEFKKPVYKEVLSVFA  162 (165)
T ss_dssp             ECCHHHHHHHHHHTCCCCSEEEECCEEEEECSCTTTCCSSCSSSSCCCEEEEEEECTTHHHHHSCGGGHHHHHHHHHHTG
T ss_pred             cccceeeceeeeeecCCccceeeEEEEEEEeCCCceeecCCCCCCCCeeEEeEECCHHHHHHhcchhhHHHHHHHHHHHH
Confidence            4555444444455555556666778888888776666665555566799999999999999876   67888 8998887


Q ss_pred             hhh
Q 026407          216 PFC  218 (239)
Q Consensus       216 ~~~  218 (239)
                      +|+
T Consensus       163 p~~  165 (165)
T d1jkna_         163 PHL  165 (165)
T ss_dssp             GGC
T ss_pred             hhC
Confidence            764

>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: AP6A hydrolase Ndx1
species: Thermus thermophilus [TaxId: 274]

Probab=99.85  E-value=1.2e-20  Score=141.69  Aligned_cols=119  Identities=24%  Similarity=0.384  Sum_probs=80.9

Q ss_pred             eeeEEEEEEeCCCCEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhhhc
Q 026407           70 RRNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQKL  149 (239)
Q Consensus        70 ~~~v~v~i~~~~~~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~  149 (239)
                      +..|++++++.++ ++|+++|..  |.|.||||++|.|||+.+||.||++||||+++..+.....  ..+.++..     
T Consensus         2 ~v~agavv~~~~~-~vLl~~~~~--g~w~~PgG~ve~gEt~~~aa~RE~~EEtGi~~~~~~~~~~--~~~~~~~~-----   71 (126)
T d1vcda1           2 ELGAGGVVFNAKR-EVLLLRDRM--GFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPLYP--TRYVNPKG-----   71 (126)
T ss_dssp             EEEEEEEEECTTS-CEEEEECTT--SCEECCEECCCTTCCHHHHHHHHHHHHHCCEEEEEEEEEE--EEEECTTS-----
T ss_pred             EEEEEEEEEECCC-EEEEEEcCC--CCEECCccccCCCCCHHHHHHHHHHHHcCCeeEEEEEEee--eeeccCCC-----
Confidence            4578889998887 899988765  8999999999999999999999999999999754322211  12222210     


Q ss_pred             ccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhcchHH-HHHHHhh
Q 026407          150 NRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRKPCG-LIFRYFS  215 (239)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~-~~~~~l~  215 (239)
                              .....++|++...+.         ...++|+.+++|++++++.++...+.. .+++.+.
T Consensus        72 --------~~~~~~~~~~~~~~~---------~~~~~e~~~~~W~~~~e~~~~~~~~~~~~il~~~~  121 (126)
T d1vcda1          72 --------VEREVHWFLMRGEGA---------PRLEEGMTGAGWFSPEEARALLAFPEDLGLLEVAL  121 (126)
T ss_dssp             --------CEEEEEEEEEEEESC---------CCCCTTCCEEEEECHHHHHHHBCSHHHHHHHHHHH
T ss_pred             --------eEEEEEEEEEEEcCC---------CCCCccceEEEEEEHHHHhhccCChHHHHHHHHHH
Confidence                    111233444443322         122447889999999999998754544 4554443

>d1ktga_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.83  E-value=5.9e-20  Score=139.02  Aligned_cols=130  Identities=23%  Similarity=0.385  Sum_probs=85.5

Q ss_pred             eeEEEEEEe--CCCCEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhhh
Q 026407           71 RNVGICLIN--SSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQK  148 (239)
Q Consensus        71 ~~v~v~i~~--~~~~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~  148 (239)
                      +++++++++  .++.++||.+|...+|.|.+|||++|.|||+.+||+||++||||+++..+...........+..     
T Consensus         3 raag~vv~~~~~~~~~~Ll~~r~~~~g~W~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~-----   77 (137)
T d1ktga_           3 KAAGLVIYRKLAGKIEFLLLQASYPPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTIHEDCHETLFYEA-----   77 (137)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEESSTTCCEESSEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEEEEEEEEEEE-----
T ss_pred             EEEEEEEEEEcCCCEEEEEEEEcCCCCcEeCcccccccCCCHHHHHHHHHHHHhCCcceeeeeeeeeeeeeecCC-----
Confidence            456666654  3333688888877679999999999999999999999999999999753322211111111111     


Q ss_pred             cccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhcchHH-HHHHHhhhhhc
Q 026407          149 LNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRKPCG-LIFRYFSPFCL  219 (239)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~-~~~~~l~~~~~  219 (239)
                             ........+|++...... .      ....+|+.+++|++++++.++...+-. .+++.+.++++
T Consensus        78 -------~~~~~~~~~~~~~~~~~~-~------~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~l~~~~~~L~  135 (137)
T d1ktga_          78 -------KGKPKSVKYWLAKLNNPD-D------VQLSHEHQNWKWCELEDAIKIADYAEMGSLLRKFSAFLA  135 (137)
T ss_dssp             -------TTEEEEEEEEEEEECSCC-C------CCCCTTEEEEEEECHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred             -------CcceEEEEEEEEEecCCC-C------cCCCcceEEEEEEEHHHHHHhcCCHHHHHHHHHHHHHhc
Confidence                   111222344444443321 1      123348899999999999988755555 78888877775

>d1vk6a2 d.113.1.4 (A:126-256) NADH pyrophosphatase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: NADH pyrophosphatase
domain: NADH pyrophosphatase
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=2.1e-20  Score=141.46  Aligned_cols=108  Identities=18%  Similarity=0.220  Sum_probs=72.7

Q ss_pred             ceeeEEEEEEeCCCCEEEEEEecCCC-CcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhh
Q 026407           69 YRRNVGICLINSSKKKIFAATRIHIP-YTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQ  147 (239)
Q Consensus        69 ~~~~v~v~i~~~~~~~vLl~~r~~~~-~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~  147 (239)
                      ..++|.+++.+. + ++||++|...+ |.|.+|||++|+|||+++||.||++||||+++........  ..+..      
T Consensus         2 i~paViv~i~~~-~-~vLL~~~~~~~~g~w~lpGG~ve~GEt~~~aa~REl~EEtG~~~~~~~~~~~--~~~~~------   71 (131)
T d1vk6a2           2 IAPCIIVAIRRD-D-SILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRYVTS--QPWPF------   71 (131)
T ss_dssp             CEEEEEEEEEET-T-EEEEEEETTTCSSCCBCEEEECCTTCCHHHHHHHHHHHHHCCEEEEEEEEEE--EEEET------
T ss_pred             cccEEEEEEEeC-C-EEEEEEeccCCCCCEecccCCCcCCCcHHHHHHHHHHHHhCCcccceeEEEE--eccCc------
Confidence            346776666654 4 88888876544 8999999999999999999999999999998754321111  11111      


Q ss_pred             hcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh
Q 026407          148 KLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV  203 (239)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~  203 (239)
                                ......+|++....  .++..     +..|+.+++|++++++..+.
T Consensus        72 ----------~~~~~~~f~~~~~~--~~~~~-----~~~E~~~~~W~~~~el~~l~  110 (131)
T d1vk6a2          72 ----------PQSLMTAFMAEYDS--GDIVI-----DPKELLEANWYRYDDLPLLP  110 (131)
T ss_dssp             ----------TEEEEEEEEEEEEE--CCCCC-----CTTTEEEEEEEETTSCCSCC
T ss_pred             ----------CceEEEEEEEEEcC--CcccC-----CCccEEEEEEEcHHHHhhCC
Confidence                      11223344444332  22232     23589999999999998776

>d2b0va1 d.113.1.1 (A:4-149) Hypothetical protein NE0184 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein NE0184
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.82  E-value=8.6e-20  Score=139.77  Aligned_cols=125  Identities=18%  Similarity=0.239  Sum_probs=78.5

Q ss_pred             eEEEEEEeCCCCEEEEEEecCCC--CcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhhhc
Q 026407           72 NVGICLINSSKKKIFAATRIHIP--YTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQKL  149 (239)
Q Consensus        72 ~v~v~i~~~~~~~vLl~~r~~~~--~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~  149 (239)
                      +|++++ ..++ ++||++|...+  |.|.||||++|.|||+++||+||++||||+++......  ....+.++.      
T Consensus         5 ~va~ii-~~~~-k~Llv~r~~~~~~~~w~~PgG~ve~gEt~~~aa~RE~~EEtGl~~~~~~~~--~~~~~~~~~------   74 (146)
T d2b0va1           5 TVAAVI-EQDD-KYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPEVLT--GIYHWTCAS------   74 (146)
T ss_dssp             EEEEEC-EETT-EEEEEEECSSSSCCEEECSEEECCTTSCHHHHHHHHHHHHHSEEEEEEEEE--EEEEEEETT------
T ss_pred             EEEEEE-EeCC-EEEEEEEecCCCCCEEECCeeeECCCCCHHHHHHHHHHHhheeecccceEE--EEEEEecCC------
Confidence            444444 4456 99999887654  78999999999999999999999999999987433211  111222211      


Q ss_pred             ccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhc---chHHHHHHHhhhhhcC
Q 026407          150 NRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVR---KPCGLIFRYFSPFCLA  220 (239)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~---~~~~~~~~~l~~~~~~  220 (239)
                              .+.....+++.+......    .....++|..+++|++++++.+...   .+  .+++.+.+|++.
T Consensus        75 --------~~~~~~~~~~~~~~~~~~----~~~~~~~E~~~~~W~~~~el~~~~~~~~~~--~v~~~l~~y~~~  134 (146)
T d2b0va1          75 --------NGTTYLRFTFSGQVVSFD----PDRKLDTGIVRAAWFSIDEIRAKQAMHRTP--LVMQCIEDYHAG  134 (146)
T ss_dssp             --------TTEEEEEEEEEEEEEEEC----TTSCCCTTEEEEEEEEHHHHHHTGGGBSST--HHHHHHHHHHTT
T ss_pred             --------CCeEEEEEEEEEEeecCC----CCCCCCcceeEEEEeeHHHHhhCccccCCH--HHHHHHHHHHhC
Confidence                    111122222222221111    1223455889999999999988763   34  556666777664

>d1xsba_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=4.2e-19  Score=137.14  Aligned_cols=132  Identities=17%  Similarity=0.277  Sum_probs=90.9

Q ss_pred             eeEEEEEEe--------CCCCEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCc
Q 026407           71 RNVGICLIN--------SSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFP  142 (239)
Q Consensus        71 ~~v~v~i~~--------~~~~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~  142 (239)
                      ++++++++.        .++.++||.+|....+.|.+|||+++.|||+.+||+||++||||++...+...........+.
T Consensus         9 ~~~g~i~f~~~~~~~~~~~~~~~LL~~~~~~~~~W~lPgG~ie~gEt~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~~~   88 (153)
T d1xsba_           9 RACGLIIFRRCLIPKVDNNAIEFLLLQASDGIHHWTPPKGHVEPGEDDLETALRATQEEAGIEAGQLTIIEGFKRELNYV   88 (153)
T ss_dssp             EEEEEEEEEECSSCSSSSTTEEEEEEEESSTTCCEECCEEECCSSSCHHHHHHHHHHHTTSCCTTTEEECSSCCEEEEEE
T ss_pred             heeEEEEEeccccccccCCCCEEEEEEecCCCCcEECCeeecCCCCCHHHHHHHHHHHHhCCccceeeeeccceeeeccc
Confidence            567877774        344599999988766789999999999999999999999999999985433222221111111


Q ss_pred             hhhhhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhcchHH-HHHHHhhhhhcC
Q 026407          143 LKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRKPCG-LIFRYFSPFCLA  220 (239)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~-~~~~~l~~~~~~  220 (239)
                      .            ........+|.+..........      ..+|+.+++|++++++.+++..+-. .++..+.+++.+
T Consensus        89 ~------------~~~~~~~~~~~~~~~~~~~~~~------~~~E~~~~~W~~~~e~~~~~~~~~~~~iL~~~~~~L~~  149 (153)
T d1xsba_          89 A------------RNKPKTVIYWLAEVKDYDVEIR------LSHEHQAYRWLGLEEACQLAQFKEMKAALQEGHQFLCS  149 (153)
T ss_dssp             S------------SSCEEEEEEEEEEESCTTCCCC------CCTTEEEEEEECHHHHHHHTCSHHHHHHHHHHHHHHTT
T ss_pred             c------------cCceeEEEEEEEEEeecccccC------CCcceeEEEEEEHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence            1            1112234445555444333222      3458999999999999999866666 788888888775

>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein DR1025
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.81  E-value=1.1e-19  Score=141.10  Aligned_cols=113  Identities=23%  Similarity=0.250  Sum_probs=75.8

Q ss_pred             eeeEEEEEEeCCCCEEEEEEecCC------CCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCch
Q 026407           70 RRNVGICLINSSKKKIFAATRIHI------PYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPL  143 (239)
Q Consensus        70 ~~~v~v~i~~~~~~~vLl~~r~~~------~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~  143 (239)
                      ..++++++++.++ ++||++|...      +|.|+||||++|+|||+.+||+||++||||+++..+...  ....+.+++
T Consensus        12 ~~a~~~vi~~~~g-~iLl~~r~~~~~~~~~~g~W~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~i--~~~~~~~~~   88 (158)
T d1sjya_          12 LRAAGVVLLNERG-DILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVRPVKFL--GAYLGRFPD   88 (158)
T ss_dssp             EEEEEEEEBCTTC-CEEEEEESCC----CCCCCEECSEEECCTTSCHHHHHHHHHHHHHSCCEEEEEEE--EEEEEECTT
T ss_pred             eeEEEEEEEeCCC-EEEEEEEecCCCCCCCCCcEECCceecCCCCCHHHHHHHHHHHHhCccceeeEEE--EEEEEECCC
Confidence            3467777888777 8999888642      378999999999999999999999999999997543221  122233332


Q ss_pred             hhhhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh
Q 026407          144 KVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV  203 (239)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~  203 (239)
                      ..             ....++|++........     ....++|+.+++|++++++.++.
T Consensus        89 ~~-------------~~~~~~~~~~~~~~~~~-----~~~~~~E~~~~~w~~~~el~~l~  130 (158)
T d1sjya_          89 GV-------------LILRHVWLAEPEPGQTL-----APAFTDEIAEASFVSREDFAQLY  130 (158)
T ss_dssp             SC-------------EEEEEEEEEEECSSCCC-----CCCCCSSEEEEEEECHHHHHHHH
T ss_pred             CC-------------EEEEEEEEEEEcCCccc-----CCCCCcceEEEEEEEHHHHhhhh
Confidence            11             11223333333332111     12234589999999999999876

>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic domain {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: mRNA decapping enzyme-like
domain: mRNA decapping enzyme Dcp2p catalytic domain
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.81  E-value=3.4e-20  Score=143.40  Aligned_cols=112  Identities=16%  Similarity=0.324  Sum_probs=72.8

Q ss_pred             eeEEEEEEeCCCCEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhhhcc
Q 026407           71 RNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQKLN  150 (239)
Q Consensus        71 ~~v~v~i~~~~~~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (239)
                      +.+++++++.++.++||++|...++.|.||||++|.|||+.+||+||++||||+++..+..... +.....         
T Consensus         3 ~v~Gaii~~~~~~kvLLvk~~~~~~~W~lPgG~ie~gEs~~~aa~RE~~EEtGi~~~~~~~~~~-~~~~~~---------   72 (151)
T d2a6ta2           3 PVRGAIMLDMSMQQCVLVKGWKASSGWGFPKGKIDKDESDVDCAIREVYEETGFDCSSRINPNE-FIDMTI---------   72 (151)
T ss_dssp             CEEEEEEBCSSSSEEEEEEESSTTCCCBCSEEECCTTCCHHHHHHHHHHHHHCCCCTTTCCTTC-EEEEEE---------
T ss_pred             cEEEEEEEECCCCEEEEEEEeCCCCCEECCcccccCCCCHHHHHHHHHHHHhCCCceeeeecce-EEeecc---------
Confidence            3568889998766999999876678999999999999999999999999999998743321111 111111         


Q ss_pred             cccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh
Q 026407          151 RRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV  203 (239)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~  203 (239)
                             .+....+|++......  ...  .....+|+.+++|+++++|..+.
T Consensus        73 -------~~~~~~~~~~~~~~~~--~~~--~~~~~~Ei~~~~W~~~~el~~~~  114 (151)
T d2a6ta2          73 -------RGQNVRLYIIPGISLD--TRF--ESRTRKEISKIEWHNLMDLPTFK  114 (151)
T ss_dssp             -------TTEEEEEEEECCCCTT--CCC--C------EEEEEEEEGGGSTTCC
T ss_pred             -------cCceEEEEEEEEeccC--Ccc--cccCCCccceEEEEEHHHhhhhh
Confidence                   1122333333222211  111  12345689999999999998754

>d1ryaa_ d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: GDP-mannose mannosyl hydrolase NudD
domain: GDP-mannose mannosyl hydrolase NudD
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=3.7e-19  Score=138.47  Aligned_cols=117  Identities=18%  Similarity=0.207  Sum_probs=74.1

Q ss_pred             eeEEEEEEeCCCCEEEEEEecCCC--CcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhhh
Q 026407           71 RNVGICLINSSKKKIFAATRIHIP--YTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQK  148 (239)
Q Consensus        71 ~~v~v~i~~~~~~~vLl~~r~~~~--~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~  148 (239)
                      .+|+++|.+.++ +|||++|...+  |.|.+|||+++.|||+++||+||++||||+++............+.++...   
T Consensus        19 ~~v~~vi~~~~~-~vLL~kR~~~~~~g~W~lPGG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~---   94 (160)
T d1ryaa_          19 VSLDFIVENSRG-EFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDNF---   94 (160)
T ss_dssp             EEEEEEEECTTS-CEEEEEECSSSSTTSEECCEEECCTTCCHHHHHHHHHHHHHSSCCCGGGSEEEEEEEEEESSBT---
T ss_pred             EEEEEEEEeCCC-eEEEEEeCCCCCCCcEecccccccCCCcHHHHHHHHHHHHhCceEeeeeeeEEEEEEEeccccc---
Confidence            466778888877 89999987654  899999999999999999999999999999863211111111122221110   


Q ss_pred             cccccCCcccCcee--EEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh
Q 026407          149 LNRRWGTNYKGQAQ--KWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV  203 (239)
Q Consensus       149 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~  203 (239)
                             .......  ..+.+.........     ...++|+.+++|++++++.+..
T Consensus        95 -------~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~E~~e~~W~~~~el~~~~  139 (160)
T d1ryaa_          95 -------SGTDFTTHYVVLGFRFRVSEEEL-----LLPDEQHDDYRWLTSDALLASD  139 (160)
T ss_dssp             -------TBSSSCEEEEEEEEEEECCGGGC-----CCCSSSEEEEEEECHHHHHHCT
T ss_pred             -------cCCCcceEEEEEEEEEEecCCCc-----cCCCcceEEEEEEEHHHhhcCc
Confidence                   0011111  22233333222221     2235589999999999998764

>d2fvva1 d.113.1.1 (A:8-142) Diphosphoinositol polyphosphate phosphohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diphosphoinositol polyphosphate phosphohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.8e-19  Score=136.51  Aligned_cols=116  Identities=19%  Similarity=0.269  Sum_probs=75.9

Q ss_pred             CCCCceeeEEEEEEeCCC-CEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCch
Q 026407           65 PPDGYRRNVGICLINSSK-KKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPL  143 (239)
Q Consensus        65 ~~~~~~~~v~v~i~~~~~-~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~  143 (239)
                      +..+++.++++++++.++ ..+||.+|...+|.|.||||++++|||+++||+||++||||+++.......  ...+..+ 
T Consensus         6 ~~~~~r~~a~~vv~~~~~~~~~lL~~~~~~~~~W~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~--~~~~~~~-   82 (135)
T d2fvva1           6 DGDGYKKRAACLCFRSESEEEVLLVSSSRHPDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGTLGRLVG--IFENQER-   82 (135)
T ss_dssp             CTTSCEEEEEEEEESSTTCCEEEEEECSSCTTSEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEEEE--EEEETTT-
T ss_pred             CCCCCceEEEEEEEEecCCCEEEEEEEeCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEEEE--EEeeccC-
Confidence            345688889888886543 366777777667999999999999999999999999999999874322111  1111111 


Q ss_pred             hhhhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh
Q 026407          144 KVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV  203 (239)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~  203 (239)
                                     .....++.+.+........     ...+|+.+++|++++++.+++
T Consensus        83 ---------------~~~~~~~~~~~~~~~~~~~-----~~~~e~~~~~W~~~~e~~~~l  122 (135)
T d2fvva1          83 ---------------KHRTYVYVLIVTEVLEDWE-----DSVNIGRKREWFKIEDAIKVL  122 (135)
T ss_dssp             ---------------TEEEEEEEEEEEEECSSCH-----HHHHHCCCEEEEEHHHHHHHH
T ss_pred             ---------------CccEEEEEEEEEeecCCCC-----CCCCceeEEEEEEHHHHHHHH
Confidence                           1122223333222111111     123477899999999999987

>d2fkba1 d.113.1.2 (A:8-168) Hypothetical protein YfcD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein YfcD
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=2.2e-18  Score=134.62  Aligned_cols=124  Identities=23%  Similarity=0.318  Sum_probs=81.7

Q ss_pred             ceeeEEEEEEeCCCCEEEEEEecCC----CCcEEcC-ceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCch
Q 026407           69 YRRNVGICLINSSKKKIFAATRIHI----PYTWQMP-QGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPL  143 (239)
Q Consensus        69 ~~~~v~v~i~~~~~~~vLl~~r~~~----~~~w~~P-gG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~  143 (239)
                      .+.+|.++++|.++ ++||++|...    +|.|++| ||++++|||+++||+||++||||++...+.....    +.+.+
T Consensus        29 ~h~~v~v~v~~~~g-~vLl~rR~~~~~~~pg~w~~~~GG~ie~gEs~~~aa~REl~EE~Gi~~~~~~~~~~----~~~~~  103 (161)
T d2fkba1          29 RHRATYIVVHDGMG-KILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFAEHGQ----FYFED  103 (161)
T ss_dssp             CEEEEEEEEECSSS-CEEEEEECSSCSSSTTCEESSBCCBCBTTCCHHHHHHHHHHHHHCCBSCCCEEEEE----EEEEE
T ss_pred             cEeEEEEEEEeCCC-CEEEEEecCccccccccccccccccccccCcHHHHHHHHHHHHhCCccceeEEEEE----EEeec
Confidence            45688888899888 8999999643    4999887 8999999999999999999999998754432222    11111


Q ss_pred             hhhhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhc--chHHHHHHHhhhhhc
Q 026407          144 KVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVR--KPCGLIFRYFSPFCL  219 (239)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~--~~~~~~~~~l~~~~~  219 (239)
                      .              ......+++.... ...+.+     ..+|+.+++|++++++.+...  .|  ..+..+..|++
T Consensus       104 ~--------------~~~~~~~~~~~~~-~~~~~~-----~~~Ev~~~~w~~~~el~~~~~~~~P--~~~~al~~~~~  159 (161)
T d2fkba1         104 K--------------NCRVWGALFSCVS-HGPFAL-----QEDEVSEVCWLTPEEITARCDEFTP--DSLKALALWMK  159 (161)
T ss_dssp             T--------------TEEEEEEEEEEEC-CCCCCC-----CTTTEEEEEEECHHHHHTTGGGBCH--HHHHHHHHHHH
T ss_pred             C--------------CcEEEEEEEEEEE-CCCCcC-----ChhHeeEEEEEeHHHHhhhhhccCC--cHHHHHHHHHh
Confidence            0              0111222222222 122232     245899999999999998753  23  44555555543

>d1hzta_ d.113.1.2 (A:) Isopentenyl diphosphate isomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Isopentenyl diphosphate isomerase
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=1.2e-18  Score=135.05  Aligned_cols=114  Identities=18%  Similarity=0.244  Sum_probs=74.9

Q ss_pred             eeeEEEEEEeCCCCEEEEEEecCC----CCcEEc-CceecCCCCCHHHHHHHHHHHHhCCccceeeeccC-ceeeecCch
Q 026407           70 RRNVGICLINSSKKKIFAATRIHI----PYTWQM-PQGGADEGEDLINAALRELREETGVTSAEFLAETP-YWLTYDFPL  143 (239)
Q Consensus        70 ~~~v~v~i~~~~~~~vLl~~r~~~----~~~w~~-PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~-~~~~~~~~~  143 (239)
                      +.++.|+|+|++| ++||+||...    +|.|.+ |||++++|||+++||+||+.||||+++..+..... ..+...+++
T Consensus         2 Hra~~v~i~n~~g-~vLl~kRs~~k~~~pg~w~~~pgG~ve~gEt~~eaa~RE~~EE~Gi~~~~~~~~~~~~~y~~~~~~   80 (153)
T d1hzta_           2 HLAFSSWLFNAKG-QLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPPESIYPDFRYRATDPS   80 (153)
T ss_dssp             EECEEEEEECTTC-CEEEEEECTTCSSSTTCEEESEEECCCTTCCHHHHHHHHHHHHHCCCBSCCEEEETTCEEEEECTT
T ss_pred             ceEEEEEEEECCC-EEEEEEeCCCCCCCCCceecccCceeecCCcHHHHHHHHHHHHcCceeecccceeccccccccccc
Confidence            5688899999988 8999999643    589987 99999999999999999999999998743321111 111111111


Q ss_pred             hhhhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh
Q 026407          144 KVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV  203 (239)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~  203 (239)
                      .            . .....++++... ....+.++     .+|+.+++|+++++|.+..
T Consensus        81 ~------------~-~~~~~~~~~~~~-~~~~~~~~-----~~Ev~~~~W~~~~el~~~i  121 (153)
T d1hzta_          81 G------------I-VENEVCPVFAAR-TTSALQIN-----DDEVMDYQWCDLADVLHGI  121 (153)
T ss_dssp             S------------C-EEEEECCEEEEE-BCSCCCCC-----TTTEEEEEEECHHHHHHHH
T ss_pred             c------------c-cceeEEEEEEEe-eCCCccCC-----hhheeEEEEeeHHHHHHHH
Confidence            0            0 011111122222 12223332     3489999999999998865

>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein EF1141
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.77  E-value=1.2e-18  Score=133.47  Aligned_cols=117  Identities=14%  Similarity=0.145  Sum_probs=72.0

Q ss_pred             eeeEEEEEEeCCCCEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhhhc
Q 026407           70 RRNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQKL  149 (239)
Q Consensus        70 ~~~v~v~i~~~~~~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~  149 (239)
                      |.+++++|++.++..+|++++..  |.|.||||++|+|||+++||+||++||||+++......... ..+.+...     
T Consensus        17 r~~~~~vi~~~~~~~lll~~~~~--~~w~lPgG~ie~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~-~~~~~~~~-----   88 (147)
T d2azwa1          17 RYAAYIIVSKPENNTMVLVQAPN--GAYFLPGGEIEGTETKEEAIHREVLEELGISVEIGCYLGEA-DEYFYSNH-----   88 (147)
T ss_dssp             CCEEEEECEEGGGTEEEEEECTT--SCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEE-EEEEEETT-----
T ss_pred             CCeEEEEEEECCCCEEEEEEcCC--CeEECcEeEeCCCCCHHHHHHHHHHhhhceeeeeeeEEEEE-EEEeeecc-----
Confidence            45677778888776777777654  89999999999999999999999999999986432211111 11111000     


Q ss_pred             ccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhcch
Q 026407          150 NRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRKP  206 (239)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~  206 (239)
                            .........+++.......      .....+|..+++|++++++.+.+.++
T Consensus        89 ------~~~~~~~~~~~~~~~~~~~------~~~~~~e~~~~~W~~~~e~~~~l~~~  133 (147)
T d2azwa1          89 ------RQTAYYNPGYFYVANTWRQ------LSEPLERTNTLHWVAPEEAVRLLKRG  133 (147)
T ss_dssp             ------TTEEEEEEEEEEEEEEEEE------CSSCC-CCSEEEEECHHHHHHHBSCH
T ss_pred             ------CCceEEEEEEEEEEEeccc------cCCCCccceEEEEEEHHHHHHHcCCh
Confidence                  0000111222222221111      12233478899999999999877555

>d2fb1a2 d.113.1.6 (A:3-149) Hypothetical protein BT0354, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein BT0354, N-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.77  E-value=2.4e-19  Score=138.19  Aligned_cols=127  Identities=13%  Similarity=0.089  Sum_probs=79.6

Q ss_pred             ceeeEEEEEE--eCCCCEEEEEEecCCC--CcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchh
Q 026407           69 YRRNVGICLI--NSSKKKIFAATRIHIP--YTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLK  144 (239)
Q Consensus        69 ~~~~v~v~i~--~~~~~~vLl~~r~~~~--~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~  144 (239)
                      +..+|.++|+  ++++.+|||++|...+  |.|.+|||+++.|||+++||.||++||||+++..+...    ..+..+.+
T Consensus         9 ~~v~Vd~Vi~~~~~~~~~vLLv~R~~~p~~g~W~lPGG~ie~~Es~~~aa~REl~EEtGl~~~~~~~~----~~~~~~~~   84 (147)
T d2fb1a2           9 FYLGIDCIIFGFNEGEISLLLLKRNFEPAMGEWSLMGGFVQKDESVDDAAKRVLAELTGLENVYMEQV----GAFGAIDR   84 (147)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEEECSSSSSTTCEECEEEECCTTSCHHHHHHHHHHHHHCCCSCEEEEE----EEECCTTS
T ss_pred             cceEEEEEEEEEeCCcCEEEEEEccCCCCCCcEeCcEeeecCCCCHHHHHHHHHHHHhCCcccceeee----eEecCCcc
Confidence            4455655554  5444479999997654  89999999999999999999999999999987543221    12222221


Q ss_pred             hhhhcccccCCcccCce-eEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh--cchHH-HHHHHhhhh
Q 026407          145 VKQKLNRRWGTNYKGQA-QKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV--RKPCG-LIFRYFSPF  217 (239)
Q Consensus       145 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~--~~~~~-~~~~~l~~~  217 (239)
                      .           ..+.. ...|++.+......       ...+|..+++|+++++++++.  +..+. .+++.++..
T Consensus        85 ~-----------~~~~~v~~~~~~~~~~~~~~-------~~~~e~~~~~W~~~~~lp~lafDH~~ii~~a~~~lr~k  143 (147)
T d2fb1a2          85 D-----------PGERVVSIAYYALININEYD-------RELVQKHNAYWVNINELPALIFDHPEMVDKAREMMKQK  143 (147)
T ss_dssp             S-----------SSSCEEEEEEEEECCTTSSC-------HHHHHHTTEEEEETTSCCCBSTTHHHHHHHHHHHHHHH
T ss_pred             c-----------CCCceEEEEEEEEecCCccc-------CCCcchhheEEecHHhchhcccCHHHHHHHHHHHHHHH
Confidence            1           01111 22334433332211       123377889999999998765  33444 556555543

>d1puna_ d.113.1.1 (A:) Nucleoside triphosphate pyrophosphorylase (MutT) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Nucleoside triphosphate pyrophosphorylase (MutT)
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=3.1e-19  Score=134.12  Aligned_cols=103  Identities=25%  Similarity=0.285  Sum_probs=68.9

Q ss_pred             EEEEeCCCCEEEEEEecCC---CCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhhhccc
Q 026407           75 ICLINSSKKKIFAATRIHI---PYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQKLNR  151 (239)
Q Consensus        75 v~i~~~~~~~vLl~~r~~~---~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (239)
                      +++++.++ ++||++|...   +|.|+||||++|.|||+++||.||++||||+++.....  .....+.+++        
T Consensus         9 ~ii~~~~~-~vLl~~R~~~~~~~g~W~~PgG~ve~gEs~~~a~~RE~~EE~gl~~~~~~~--~~~~~~~~~~--------   77 (129)
T d1puna_           9 GIIRNENN-EIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQHFSL--FEKLEYEFPD--------   77 (129)
T ss_dssp             EECBCTTS-CEEEBCCCSSCSCTTCCBCSCCSCTTTSCTTHHHHHHHHHTTCSCCCCCCC--SEEEEEECSS--------
T ss_pred             EEEEECCC-EEEEEEecCCCCCCCcEECCcceecCCCchhHHHHHHHHHHhCCcccccee--eeEEeecccc--------
Confidence            34556666 9999998654   38999999999999999999999999999998754321  1223333322        


Q ss_pred             ccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh
Q 026407          152 RWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV  203 (239)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~  203 (239)
                              .....+++.+.......       ...|+.+++|++++++.++.
T Consensus        78 --------~~~~~~~~~~~~~~~~~-------~~~E~~~~~W~~~~el~~~~  114 (129)
T d1puna_          78 --------RHITLWFWLVERWEGEP-------WGKEGQPGEWMSLVGLNADD  114 (129)
T ss_dssp             --------EEEEEEEEECCCCSSCC-------CTTSSSCCEEECGGGCCTTT
T ss_pred             --------cceeEEEEEEeeccCcC-------CCCccceEEEEEHHHcccCC
Confidence                    11222333333221111       23477899999999997754

>d2b06a1 d.113.1.1 (A:1-155) Hypothetical protein SP1235 (spr1115) {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein SP1235 (spr1115)
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.76  E-value=2.1e-18  Score=133.75  Aligned_cols=106  Identities=17%  Similarity=0.203  Sum_probs=67.7

Q ss_pred             EEEEEeCCCCEEEEEEecCCC---CcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhhhcc
Q 026407           74 GICLINSSKKKIFAATRIHIP---YTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQKLN  150 (239)
Q Consensus        74 ~v~i~~~~~~~vLl~~r~~~~---~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (239)
                      .++|++.++.++||++|....   +.|.||||++|+|||+++||.||++||||+++......  ....+.+..       
T Consensus        12 ~~~i~~~~~~~lLl~~R~~~~~~~~~w~~PGG~ve~gEs~~~aa~RE~~EEtGl~v~~~~~~--~~~~~~~~~-------   82 (155)
T d2b06a1          12 ICLIEDLETQRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEETGLTIQNPQLV--GIKNWPLDT-------   82 (155)
T ss_dssp             EEEEEETTTTEEEEEEEC-----CCEEECCCCBCCTTSCHHHHHHHHHHHHHSEEEESCEEE--EEEEEECTT-------
T ss_pred             EEEEEECCCCEEEEEEECCCCCCCCcEECceeEEcCCCCHHHHHHHHHHHhcCeeEeeeEEE--EEEEeecCC-------
Confidence            345667777699999886443   77999999999999999999999999999987432111  111222211       


Q ss_pred             cccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh
Q 026407          151 RRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV  203 (239)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~  203 (239)
                              +.....+++.+......+       ...|..+++|++++++.++.
T Consensus        83 --------~~~~~~~~~~~~~~~~~~-------~~~e~~~~~W~~~~el~~l~  120 (155)
T d2b06a1          83 --------GGRYIVICYKATEFSGTL-------QSSEEGEVSWVQKDQIPNLN  120 (155)
T ss_dssp             --------SCEEEEEEEEECEEEECC-------CCBTTBEEEEEEGGGGGGSC
T ss_pred             --------CCeEEEEEEEEEecCCcc-------CCCchheEEEEEHHHhccCC
Confidence                    111222333332211111       23377899999999998875

>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: 7,8-dihydro-8-oxoguanine triphosphatase Hmth1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=5.4e-18  Score=131.57  Aligned_cols=57  Identities=25%  Similarity=0.370  Sum_probs=47.0

Q ss_pred             eEEEEEEeCCCCEEEEEEecCCC--CcEEcCceecCCCCCHHHHHHHHHHHHhCCcccee
Q 026407           72 NVGICLINSSKKKIFAATRIHIP--YTWQMPQGGADEGEDLINAALRELREETGVTSAEF  129 (239)
Q Consensus        72 ~v~v~i~~~~~~~vLl~~r~~~~--~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~  129 (239)
                      .++++++..++ +|||++|...+  |.|.+|||++|.|||+++||+||++||||+++..+
T Consensus         6 ~~~~v~i~~~~-~vLL~~r~~~~~~g~W~lPGG~ve~gEt~~~aa~RE~~EEtGl~~~~~   64 (156)
T d1irya_           6 LYTLVLVLQPQ-RVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDAL   64 (156)
T ss_dssp             EEEEECEECSS-EEEEEEESSSSSBTCEECBCCBCCTTCCHHHHHHHHHHHHHSCCBSCC
T ss_pred             EEEEEEEEECC-EEEEEEecCCCCCCEEECcEeEecCCCCHHHHHHHHHHHHHCCcccce
Confidence            34445555566 99999887543  89999999999999999999999999999987533

>d1v8ya_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Thermus thermophilus [TaxId: 274]

Probab=99.73  E-value=1.3e-17  Score=129.92  Aligned_cols=108  Identities=25%  Similarity=0.391  Sum_probs=67.6

Q ss_pred             eeEEEEEEeCCCCEEEEEEecCCC---CcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhh
Q 026407           71 RNVGICLINSSKKKIFAATRIHIP---YTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQ  147 (239)
Q Consensus        71 ~~v~v~i~~~~~~~vLl~~r~~~~---~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~  147 (239)
                      .+|++++++ ++ ++||+++...+   ..|+||||++|+|||+++||+||+.||||+.+ .+......   +..+.    
T Consensus        25 ~aV~vl~~~-~~-~vlLv~q~R~~~~~~~~elP~G~ve~gE~~~~aA~REl~EEtG~~~-~~~~l~~~---~~~~g----   94 (158)
T d1v8ya_          25 PAVAVIALR-EG-RMLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTGLSG-DLTYLFSY---FVSPG----   94 (158)
T ss_dssp             CEEEEEEEE-TT-EEEEEECCBTTTTBCCBBCSEEECCTTCCHHHHHHHHHHHHHSEEE-EEEEEEEE---ESCTT----
T ss_pred             CEEEEEEEE-CC-EEEEEEeeecCCCCceEecchhhccccCCHHHHHHHHHHhhcCCcc-eeeeecce---ecCCC----
Confidence            467777776 45 88887764332   78999999999999999999999999999975 33222221   11111    


Q ss_pred             hcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh
Q 026407          148 KLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV  203 (239)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~  203 (239)
                               +..+..++|+...... .     ....+++|..++.|++++|+.+++
T Consensus        95 ---------~~~~~~~~f~a~~~~~-~-----~~~~d~~E~~ev~w~~~~e~~~~i  135 (158)
T d1v8ya_          95 ---------FTDEKTHVFLAENLKE-V-----EAHPDEDEAIEVVWMRPEEALERH  135 (158)
T ss_dssp             ---------TBCCEEEEEEEEEEEE-C-----C--------CEEEEECHHHHHHHH
T ss_pred             ---------cceEEEEEEEEccccc-c-----ccCCCCCeeEEEEEEEHHHHHHHH
Confidence                     1223344444332211 1     122334588899999999999987

>d2o5fa1 d.113.1.2 (A:7-168) Hypothetical protein DR0079 {Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein DR0079
species: Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]

Probab=99.73  E-value=1.1e-17  Score=130.67  Aligned_cols=112  Identities=20%  Similarity=0.271  Sum_probs=74.9

Q ss_pred             ceeeEEEEEEeCCCCEEEEEEecC----CCCcEEcC-ceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCch
Q 026407           69 YRRNVGICLINSSKKKIFAATRIH----IPYTWQMP-QGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPL  143 (239)
Q Consensus        69 ~~~~v~v~i~~~~~~~vLl~~r~~----~~~~w~~P-gG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~  143 (239)
                      ++.+|.++++|++| ++||++|..    .+|.|.+| ||+++.|||+.+||+||++||||+++......  ....+....
T Consensus        27 ~~~~v~~~v~~~~g-~~Ll~rR~~~k~~~pg~w~~~~GG~ve~gEs~~eaa~REl~EE~Gl~~~~~~~~--~~~~~~~~~  103 (162)
T d2o5fa1          27 RVRVVNAFLRNSQG-QLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEIDALSWR--PLASFSPFQ  103 (162)
T ss_dssp             GSEEEEEEEECTTS-CEEEEEC-------CCSBCCSEEEECBTTCCHHHHHHHHHHHHHCCCGGGSEEE--EEEEECTTT
T ss_pred             eEEEEEEEEEcCCC-CEEEEEeccCccccccccccccCCcccCCCChhhhhhhhhhheeCcceeeEEEE--EEEEecccc
Confidence            55688888999888 899999853    34999887 99999999999999999999999987433211  111221111


Q ss_pred             hhhhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh
Q 026407          144 KVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV  203 (239)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~  203 (239)
                                    .+....++++.+... ..+.+     +.+|+.+++|++++++.+..
T Consensus       104 --------------~~~~~~~~~~~~~~~-~~~~~-----~~~Ev~~~~W~~~eel~~~~  143 (162)
T d2o5fa1         104 --------------TTLSSFMCVYELRSD-ATPIF-----NPNDISGGEWLTPEHLLARI  143 (162)
T ss_dssp             --------------SSCSSEEEEEEEECS-SCCCC-----CTTTCSEEEEECHHHHHHHH
T ss_pred             --------------ccceEEEEEEEEecC-CCccC-----ChhHeeEEEEeeHHHHHHHH
Confidence                          111222334433332 12222     24588999999999999877

>d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein PAE3301
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.71  E-value=1.1e-17  Score=128.26  Aligned_cols=51  Identities=25%  Similarity=0.373  Sum_probs=43.5

Q ss_pred             EEEEEeCCCCEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccc
Q 026407           74 GICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSA  127 (239)
Q Consensus        74 ~v~i~~~~~~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~  127 (239)
                      +++|++ ++ +|||++|.. .|.|.||||++|.|||+.+||.||++||||+++.
T Consensus         5 ~~vi~~-d~-kvLl~~r~~-~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~   55 (152)
T d1k2ea_           5 SGVLVE-NG-KVLLVKHKR-LGVYIYPGGHVEHNETPIEAVKREFEEETGIVVE   55 (152)
T ss_dssp             EEECEE-TT-EEEEEECTT-TCSEECSEEECCTTCCHHHHHHHHHHHHHSEEEE
T ss_pred             EEEEEE-CC-EEEEEEEcC-CCeEECCeeEEeCCccHHHHHHHHHHHHHCCcee
Confidence            344444 45 899999865 4899999999999999999999999999999874

>d1nqza_ d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Coenzyme A pyrophosphatase
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.71  E-value=4.5e-17  Score=130.17  Aligned_cols=112  Identities=23%  Similarity=0.224  Sum_probs=73.9

Q ss_pred             ceee-EEEEEEeCCCCEEEEEEecC----CCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccc--eeeeccCceeeecC
Q 026407           69 YRRN-VGICLINSSKKKIFAATRIH----IPYTWQMPQGGADEGEDLINAALRELREETGVTSA--EFLAETPYWLTYDF  141 (239)
Q Consensus        69 ~~~~-v~v~i~~~~~~~vLl~~r~~----~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~--~~~~~~~~~~~~~~  141 (239)
                      +|.+ |.+++++.++.+||+++|..    ++|.|.||||++|.|||+.+||+||++||||++..  .+++......+   
T Consensus        30 ~r~aaVlv~~~~~~~~~vll~kR~~~l~~h~G~~~fPGG~~e~~E~~~~aAlRE~~EE~Gl~~~~~~~lg~l~~~~~---  106 (187)
T d1nqza_          30 YRRAAVLVALTREADPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPTQAALREAQEEVALDPAAVTLLGELDDVFT---  106 (187)
T ss_dssp             CEEEEEEEEEESSSSCBBCEEEEC------CCCEECSEEECCTTCCHHHHHHHHHHHHHCCCGGGCEEEEECCCEEE---
T ss_pred             CCccEEEEEEEECCCCEEEEEEcCCCCCCCCCeEeCCccccccCCchhHHHHHHHHHhhccccceeEEeecccceee---
Confidence            4444 44455544445899999974    36999999999999999999999999999999874  33333332211   


Q ss_pred             chhhhhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh
Q 026407          142 PLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV  203 (239)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~  203 (239)
                       .              .+...+.|++.+........     ...+|+.++.|++++++.+..
T Consensus       107 -~--------------~~~~V~p~v~~l~~~~~~~~-----~~~~EV~~v~~vpl~~L~~~~  148 (187)
T d1nqza_         107 -P--------------VGFHVTPVLGRIAPEALDTL-----RVTPEVAQIITPTLAELRAVP  148 (187)
T ss_dssp             -T--------------TTEEEEEEEEEECGGGGGGC-----CCCTTEEEEECCBHHHHHHSC
T ss_pred             -c--------------cccEEEEEEEEECCcccccc-----ccCCcceEEEeccHHHHhcCc
Confidence             0              12234445555543322111     224589999999999998753

>d1mqea_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.70  E-value=5.5e-17  Score=131.12  Aligned_cols=113  Identities=19%  Similarity=0.231  Sum_probs=70.4

Q ss_pred             eeEEEEEEeCCCCEEEEEEecCCC---CcEEcCceecC-CCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhh
Q 026407           71 RNVGICLINSSKKKIFAATRIHIP---YTWQMPQGGAD-EGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVK  146 (239)
Q Consensus        71 ~~v~v~i~~~~~~~vLl~~r~~~~---~~w~~PgG~ve-~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~  146 (239)
                      .+|++++++.++ ++||+++...+   ..|+||+|++| +||++++||+||+.||||+.+..+..........       
T Consensus        39 ~~V~vl~~~~~~-~ilLvrq~R~~~~~~~welPaG~ie~~gE~~~~aA~REl~EETG~~~~~~~~l~~~~~~~-------  110 (202)
T d1mqea_          39 GAVAIVAMDDNG-NIPMVYQYRHTYGRRLWELPAGLLDVAGEPPHLTAARELREEVGLQASTWQVLVDLDTAP-------  110 (202)
T ss_dssp             CEEEEEECCTTS-EEEEEEEEETTTTEEEEECCEEECCSTTCCHHHHHHHHHHHHHCEEEEEEEEEEEECSCT-------
T ss_pred             CeEEEEEECCCC-EEEEEEecccccCceEEeccccccccCCCCHHHHHHHHHhhccccccccceEeeeeeccC-------
Confidence            467777788877 88888764433   47999999999 7999999999999999999876553322211111       


Q ss_pred             hhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhc
Q 026407          147 QKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVR  204 (239)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~  204 (239)
                               .+..+..++|++.........    ...+++|..++.|++++|+.+++.
T Consensus       111 ---------g~~~~~~~~fla~~~~~~~~~----~~~~eee~i~v~w~~~~e~~~~i~  155 (202)
T d1mqea_         111 ---------GFSDESVRVYLATGLREVGRP----EAHHEEADMTMGWYPIAEAARRVL  155 (202)
T ss_dssp             ---------TTBCCCEEEEEEEEEEECCC--------------CEEEEEHHHHHHHHT
T ss_pred             ---------ccCCcEEEEEEEEeccccCCC----CCCCccceEEEEEEEHHHHHHHHH
Confidence                     122333444444322211111    112334566899999999999883

>d1vhza_ d.113.1.1 (A:) ADP compounds hydrolase NudE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP compounds hydrolase NudE
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=7.4e-17  Score=128.78  Aligned_cols=111  Identities=18%  Similarity=0.189  Sum_probs=70.5

Q ss_pred             eEEEEEEeCCCCEEEEEEecCCC---CcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhhh
Q 026407           72 NVGICLINSSKKKIFAATRIHIP---YTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQK  148 (239)
Q Consensus        72 ~v~v~i~~~~~~~vLl~~r~~~~---~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~  148 (239)
                      +|.++... ++ ++||+++...+   ..|+||||++|+|||+++||+||++||||+++..+......+...+        
T Consensus        50 ~v~vi~~~-~~-~vlLvrq~R~~~~~~~~elP~G~ie~gE~p~~aA~REl~EEtG~~~~~~~~l~~~~~~~g--------  119 (186)
T d1vhza_          50 AVMIVPIV-DD-HLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGFGANDLTFLKKLSMAPS--------  119 (186)
T ss_dssp             EEEEEEEE-TT-EEEEEEEEETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEECCTT--------
T ss_pred             EEEEEEcc-CC-EEEEEEeeecCCCceEeecccccCCCCcCHHHHHHHHHHHHhccccccceecceeecccc--------
Confidence            33344344 44 78887754333   6799999999999999999999999999998865543322211111        


Q ss_pred             cccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhcch
Q 026407          149 LNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRKP  206 (239)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~  206 (239)
                              +.....++|+..  ..    .......+++|..++.|++++++.+++.++
T Consensus       120 --------~~~~~~~~~~a~--~~----~~~~~~~de~E~~~~~~~~~~e~~~~i~~g  163 (186)
T d1vhza_         120 --------YFSSKMNIVVAQ--DL----YPESLEGDEPEPLPQVRWPLAHMMDLLEDP  163 (186)
T ss_dssp             --------TCCCEEEEEEEE--EE----EECCCCCCCSSCCCEEEEEGGGGGGGGGCT
T ss_pred             --------ccceEEEEEEEE--ec----ccccCCCCCCcEEEEEEEeHHHHHHHHHcC
Confidence                    122233333332  11    111122345688899999999999988433

>d1g0sa_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Escherichia coli [TaxId: 562]

Probab=99.67  E-value=1.4e-16  Score=129.22  Aligned_cols=116  Identities=16%  Similarity=0.189  Sum_probs=77.0

Q ss_pred             eeEEEEEEeCCCCEEEEEEecCCC--------CcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCc
Q 026407           71 RNVGICLINSSKKKIFAATRIHIP--------YTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFP  142 (239)
Q Consensus        71 ~~v~v~i~~~~~~~vLl~~r~~~~--------~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~  142 (239)
                      .+|++++++.++++++|++....+        ..|++|+|.+|+|||+++||+||+.||||+.+..+......+..   |
T Consensus        58 ~~v~vl~~~~~~~~vlLvrQ~R~~~~~~~~~~~~lElPAG~id~gE~p~~aA~REL~EEtG~~~~~l~~l~~~~~s---p  134 (209)
T d1g0sa_          58 HAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVKRTKPVLSFLAS---P  134 (209)
T ss_dssp             CEEEEEEEETTTTEEEEEEEECGGGGGGSSCSEEEECEEEECCTTCCHHHHHHHHHHHHHCCCCCCEEEEEEEESC---T
T ss_pred             CEEEEEEEEecCCeEEEEEEEeccccccCCCceEEeeceeecCCCcCHHHHHHHHHHhhhcccccceeeccccccC---C
Confidence            467777887765588887764422        36899999999999999999999999999998666544332222   1


Q ss_pred             hhhhhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhc
Q 026407          143 LKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVR  204 (239)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~  204 (239)
                                   .+..+..+.|++........ . .....+++|..++.|++++|+.+++.
T Consensus       135 -------------g~~~e~~~~f~a~~~~~~~~-~-~~~~~de~E~iev~~v~~~e~~~~i~  181 (209)
T d1g0sa_         135 -------------GGTSERSSIMVGEVDATTAS-G-IHGLADENEDIRVHVVSREQAYQWVE  181 (209)
T ss_dssp             -------------TTBCCEEEEEEEECCGGGCC----------CCSCEEEEEEHHHHHHHHH
T ss_pred             -------------cccCCceEEEEEEEeccccc-C-CCCCCCCCceeEEEEEeHHHHHHHHH
Confidence                         12334455566554432211 1 11223455778999999999999883

>d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700, N-terminal domain {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein EF2700, N-terminal domain
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.67  E-value=2.4e-16  Score=127.32  Aligned_cols=110  Identities=22%  Similarity=0.285  Sum_probs=69.7

Q ss_pred             eEEEEE--EeCCC--CEEEEEEecCCC--CcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhh
Q 026407           72 NVGICL--INSSK--KKIFAATRIHIP--YTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKV  145 (239)
Q Consensus        72 ~v~v~i--~~~~~--~~vLl~~r~~~~--~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~  145 (239)
                      +|.++|  ++.++  .+|||++|...+  |.|.+|||++|.|||+++||.||++||||+++....  ......+..+.+.
T Consensus        39 ~vd~vi~~~~~~~~~l~VLLv~R~~~p~~g~W~lPGG~ve~gEs~~eaa~REl~EEtGl~~~~~~--l~~~~~~~~~~r~  116 (202)
T d2fmla2          39 TVDMVLLCYNKEADQLKVLLIQRKGHPFRNSWALPGGFVNRNESTEDSVLRETKEETGVVISQEN--IEQLHSFSRPDRD  116 (202)
T ss_dssp             EEEEEEEEEETTTTEEEEEEEEECSSSSTTCEECCEEECCTTSCHHHHHHHHHHHHHCCCCCGGG--EEEEEEECCTTSS
T ss_pred             EEEEEEEEEecCCCeeEEEEEEecCCCCCCcEECCEEeecCCCCHHHHhhhhhHhhcCeeeecce--eeeeeecccCCcc
Confidence            444444  45443  379999998755  999999999999999999999999999999863221  1122334433321


Q ss_pred             hhhcccccCCcccCceeE-EEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHh
Q 026407          146 KQKLNRRWGTNYKGQAQK-WFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLER  202 (239)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~  202 (239)
                                 ..+.... .|+..+...  .      ....+|..+++|++++++...
T Consensus       117 -----------~~~~~i~~~~~~~~~~~--~------~~~~~e~~~~~Wf~ld~l~~~  155 (202)
T d2fmla2         117 -----------PRGWVVTVSYLAFIGEE--P------LIAGDDAKEVHWFNLERHGQH  155 (202)
T ss_dssp             -----------TTSSEEEEEEEEECCCC--C------CCCCTTEEEEEEEEEEEETTE
T ss_pred             -----------ccceEEEEEEEEEeCCC--C------cCCCcceeeEEEEeHHHCcch
Confidence                       0122222 223222221  1      123458899999999998763

>d1rrqa2 d.113.1.3 (A:234-360) Adenine glycosylase MutY, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutY C-terminal domain-like
domain: Adenine glycosylase MutY, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.58  E-value=3.5e-15  Score=111.63  Aligned_cols=116  Identities=10%  Similarity=0.103  Sum_probs=72.0

Q ss_pred             EEEEEEeCCCCEEEEEEecCCC---CcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhhhc
Q 026407           73 VGICLINSSKKKIFAATRIHIP---YTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQKL  149 (239)
Q Consensus        73 v~v~i~~~~~~~vLl~~r~~~~---~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~  149 (239)
                      ++++|++.+| ++||+||...+   |+|+||||.+|.+|+ .+++.||++||+|+++......  ..+.+.|++      
T Consensus         7 ~~~vi~~~~g-~iLl~kR~~~~~~~GlWefP~g~~e~~~~-~e~l~rel~ee~gi~v~~~~~l--~~~~H~fsh------   76 (127)
T d1rrqa2           7 AVAVLADDEG-RVLIRKRDSTGLLANLWEFPSCETDGADG-KEKLEQMVGEQYGLQVELTEPI--VSFEHAFSH------   76 (127)
T ss_dssp             EEEEEEESSS-EEEEEECCSSSTTTTCEECCEEECTTTCC-HHHHHHTTC----CEEEECSCC--EEEEEECSS------
T ss_pred             EEEEEEECCC-EEEEEECCCCCCCCCceecccccccCCCC-HHHHHHHhhhhcceEEEecccc--ccceEecCC------
Confidence            3445567777 99999997654   999999999997777 7899999999999987422111  123344433      


Q ss_pred             ccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhcchHH-HHHHHhhhhh
Q 026407          150 NRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRKPCG-LIFRYFSPFC  218 (239)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~-~~~~~l~~~~  218 (239)
                                ......++.......          ..+..+++|++++++.++.-.... ++++.+.+|.
T Consensus        77 ----------~~~~~~~~~~~~~~~----------~~~~~~~~Wv~~~el~~~~~p~~~~Ki~~~~~~~~  126 (127)
T d1rrqa2          77 ----------LVWQLTVFPGRLVHG----------GPVEEPYRLAPEDELKAYAFPVSHQRVWREYKEWA  126 (127)
T ss_dssp             ----------EEEEEEEEEEEEECC----------SCCCTTEEEEEGGGGGGSCCCHHHHHHHHHHHHHC
T ss_pred             ----------eEEEEEEEEEEECCC----------CccccceEEeeHHHHhHCCCChHHHHHHHHHHHhc
Confidence                      122222333222110          114457899999999987654445 7777777663

>d1viua_ d.113.1.1 (A:) ADP-ribose pyrophosphatase homologue YffH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase homologue YffH
species: Escherichia coli [TaxId: 562]

Probab=99.52  E-value=3.3e-14  Score=113.36  Aligned_cols=115  Identities=17%  Similarity=0.154  Sum_probs=71.9

Q ss_pred             eeEEEEEEeCCCCEEEEEEecCC---------CCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecC
Q 026407           71 RNVGICLINSSKKKIFAATRIHI---------PYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDF  141 (239)
Q Consensus        71 ~~v~v~i~~~~~~~vLl~~r~~~---------~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~  141 (239)
                      .+|+|++++.++++++|++....         .-.|++|||.+| ||++++||+||+.||||+.+..+......+...+ 
T Consensus        44 ~aV~Vl~~~~~~~~vllvrQ~R~~v~~~~~~~~~~~e~paG~~d-~e~p~~aA~REL~EEtG~~~~~~~~lg~~~~spG-  121 (189)
T d1viua_          44 NGATILLYNTKKKTVVLIRQFRVATWVNGNESGQLIESCAGLLD-NDEPEVCIRKEAIEETGYEVGEVRKLFELYMSPG-  121 (189)
T ss_dssp             CEEEEEEEETTTTEEEEEEEECHHHHTTTCSSCEEEECEEEECT-TSCHHHHHHHHHHHHHSCCCCCCEEEEEEESCTT-
T ss_pred             CEEEEEEEEcCCCEEEEEEeeccceeeccCCCcceecCcEEecC-CCCHHHHHHHHHHHhhCCcceEEEEcceeecCcc-
Confidence            47888888876558888665321         146789999988 6668999999999999999866654433222211 


Q ss_pred             chhhhhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhcc
Q 026407          142 PLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRK  205 (239)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~  205 (239)
                                     +..+..+.|+.......   .......+++|..++.|++++|+.+++.+
T Consensus       122 ---------------~~~e~~~~f~a~~~~~~---~~~~~~~~e~E~i~v~~~~~~e~~~~i~~  167 (189)
T d1viua_         122 ---------------GVTELIHFFIAEYSDNQ---RANAGGGVEDEDIEVLELPFSQALEMIKT  167 (189)
T ss_dssp             ---------------TBCCEEEEEEEECCTTC---C---------CCEEEEEEEHHHHHHHHHH
T ss_pred             ---------------ccCceEEEEEEEECCcc---cccCCCCCCCccEEEEEEEHHHHHHHHHc
Confidence                           22334455554433221   11112234568889999999999998833

>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: NUDT9 (mitochondrial ADP-ribose pyrophosphatase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=2.1e-13  Score=115.51  Aligned_cols=43  Identities=28%  Similarity=0.381  Sum_probs=39.2

Q ss_pred             EEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccc
Q 026407           84 KIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSA  127 (239)
Q Consensus        84 ~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~  127 (239)
                      ++|+++|.. .|.|.||||++|+||++.+||+||+.||||+...
T Consensus       140 qvLlIkR~d-~g~WaLPGG~Vd~GEs~~~Aa~REl~EETGl~~~  182 (292)
T d1q33a_         140 QFVAIKRKD-CGEWAIPGGMVDPGEKISATLKREFGEEALNSLQ  182 (292)
T ss_dssp             EEEEEECTT-TCSEECCCEECCTTCCHHHHHHHHHHHHHSCGGG
T ss_pred             EEEEEEecC-CCcEeCCcccCCCCCCHHHHHHHHHHHHhCcccc
Confidence            588888876 3899999999999999999999999999999864

>d1u20a1 d.113.1.1 (A:14-209) U8 snorna-binding protein x29 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: U8 snorna-binding protein x29
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.42  E-value=2.3e-13  Score=108.80  Aligned_cols=60  Identities=27%  Similarity=0.328  Sum_probs=48.5

Q ss_pred             CCceeeEEEEEEeCCCC----------EEEEEEecCCCCcEEcCceecCCCCC-HHHHHHHHHHHHhCCccce
Q 026407           67 DGYRRNVGICLINSSKK----------KIFAATRIHIPYTWQMPQGGADEGED-LINAALRELREETGVTSAE  128 (239)
Q Consensus        67 ~~~~~~v~v~i~~~~~~----------~vLl~~r~~~~~~w~~PgG~ve~gEs-~~~aa~REl~EEtGl~~~~  128 (239)
                      .++|.++.++++.++..          .+|+++|.+  |.|.||||++|.||+ +++||.||+.||||+++..
T Consensus        17 ~g~r~a~~~~~~~~~~~~~~~~~~~~~~vl~~~r~~--g~~~~pgg~~~~~e~~~~~~~~re~~ee~g~~~~~   87 (196)
T d1u20a1          17 EGYKHACHALLHAPSQAKLFDRVPIRRVLLMMMRFD--GRLGFPGGFVDTRDISLEEGLKRELEEELGPALAT   87 (196)
T ss_dssp             SSCEEEEEEEEEEECCCEETTTEECCEEEEEEEETT--SCEECSEEEECTTTSCHHHHHHHHHHHHHCGGGGG
T ss_pred             CCcceEEEEEEEcCCCceEEEEecCCcEEEEEEecC--CcEECCccccCCCCCcHHHHHHHHHHHHhCcccee
Confidence            45888888777655432          467788865  899999999999995 7899999999999998743

>d1x51a1 d.113.1.3 (A:8-149) A/G-specific adenine DNA glycosylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutY C-terminal domain-like
domain: A/G-specific adenine DNA glycosylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=4.2e-12  Score=95.93  Aligned_cols=121  Identities=12%  Similarity=0.105  Sum_probs=71.3

Q ss_pred             ceeeEEEEEEeC--CCCEEEEEEecCCC---CcEEcCceecCCCCCHHHHHHHHHHHHhCCcc--ceeeeccCceeeecC
Q 026407           69 YRRNVGICLINS--SKKKIFAATRIHIP---YTWQMPQGGADEGEDLINAALRELREETGVTS--AEFLAETPYWLTYDF  141 (239)
Q Consensus        69 ~~~~v~v~i~~~--~~~~vLl~~r~~~~---~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~--~~~~~~~~~~~~~~~  141 (239)
                      .+..+++++.+.  .+++|||.+|...+   |+|+||+|.++.||+..+++.||..+|.+...  ......  ....+.|
T Consensus        11 ~~~~~~~vv~~~~~~~~~iLl~kR~~~g~l~GlWefP~~~~~~~e~~~~~~~~~~~~e~~~~~~~~~~~~~--~~v~H~f   88 (142)
T d1x51a1          11 EESSATCVLEQPGALGAQILLVQRPNSGLLAGLWEFPSVTWEPSEQLQRKALLQELQRWAGPLPATHLRHL--GEVVHTF   88 (142)
T ss_dssp             EEEEEEEEEEEECSSSEEEEEEECCCCSTTCSCEECCEEECCSSHHHHHHHHHHHHHHHSCCCCSTTCEEC--CCBCCBC
T ss_pred             EEEEEEEEEEecCCCCCEEEEEECCCCCCCCcceeeeEeeccCCcchhHHHHHHHHHHhccCcceeeeeee--ccceecc
Confidence            334444555543  13399999997665   99999999999999998888776655555433  111111  1122333


Q ss_pred             chhhhhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhcchHH-HHHHHh
Q 026407          142 PLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRKPCG-LIFRYF  214 (239)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~-~~~~~l  214 (239)
                      +                +....+.++.+......       ....+..+++|++++++.++.-.... ++++.+
T Consensus        89 s----------------H~~~~~~v~~~~~~~~~-------~~~~~~~~~~W~~~~el~~~~lp~~~~Kil~~~  139 (142)
T d1x51a1          89 S----------------HIKLTYQVYGLALEGQT-------PVTTVPPGARWLTQEEFHTAAVSTAMKKVFRVY  139 (142)
T ss_dssp             S----------------SCEEEEEEEEEECSSCC-------CCCCCCTTEEEEEHHHHHHSCCCHHHHHHHHHH
T ss_pred             C----------------CcceEEEEEEEEEeCCC-------cccccCccCEEeeHHHccccCCCHHHHHHHHHH
Confidence            2                23333444444332111       11236678999999999987643334 555544