Citrus Sinensis ID: 026435

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------24
Protein Sequence
MDNSADSCDIVDRDGDAAATSSSTTSAPAAGAGGFKLLNRHGTVHQFMGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANFAAFRNKQLESLPELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRIPRTLSKDKVS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccHHHHccccccEEEEEcccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccEccccccccccccccccHHccHHHHHHccccccHHHHcccccHHHEEEEHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
mdnsadscdivdrdgdaaatsssttsapaagaggfkllnrhgtvhqfmgggrTADVLLWKRRRVSFGVIVVATVAWLIFErsglpflsvCSDVLLLLIVLMFFRANFAAFRNKqleslpelevsEEMVNNAAASFRVKINYLLLMAhditvgkdFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVdenvisriprtlskdkvs
Flexible Loop (DISEMBL)
mdnsadscDIVDRDGDAaatsssttsapaagaGGFKLLNRHGTVHQFMGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANFAAFRNKQLESLPELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISqhykvvdenvisriprtlskdkvs
Low Complexity Region (SEG)
MDNSADSCDIVDRDGDaaatsssttsapaagaggFKLLNRHGTVHQFMGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMffranfaafrnKQleslpelevseeMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRIPRTLSKDKVS
Disordered region (IsUnstruct)
********************************GGFKLLNRHGTVHQFMGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANFAAFRNKQLESLPELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRI**********
Disordered Region (DISOPRED)
********************************************HQFMGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANFAAFRNKQLESLPELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDEN***************
Disordered Region (DISEMBL)
MDNSADSCDIVDRDG**************AGAGGFKLLNRHGTVHQFMGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANFAAFRNKQLESLPELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRIPRTLSKDKVS
Disordered Region (DISPRO)
*****************************AGAGGFKLLNRHGTVHQFMGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANFAAFRNKQLESLPELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRIPR********
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDNSADSCDIVDRDGDAAATSSSTTSAPAAGAGGFKLLNRHGTVHQFMGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANFAAFRNKQLESLPELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRIPRTLSKDKVS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	238	2.2.26 [Sep-21-2011]
Q8GYH6	226	Reticulon-like protein B1	yes	no	0.928	0.977	0.629	1e-80
Q9SUT9	271	Reticulon-like protein B2	no	no	0.848	0.745	0.356	2e-35
Q6DBN4	253	Reticulon-like protein B6	no	no	0.962	0.905	0.331	1e-34
Q9SUR3	275	Reticulon-like protein B1	no	no	0.848	0.734	0.346	1e-34
Q9FFS0	257	Reticulon-like protein B4	no	no	0.848	0.785	0.352	3e-33
O82352	255	Reticulon-like protein B5	no	no	0.857	0.8	0.348	2e-32
Q9SH59	255	Reticulon-like protein B3	no	no	0.840	0.784	0.33	5e-32
Q6NPD8	201	Reticulon-like protein B1	no	no	0.781	0.925	0.344	7e-31
Q9LT71	200	Reticulon-like protein B1	no	no	0.773	0.92	0.354	3e-30
Q9LJQ5	225	Reticulon-like protein B9	no	no	0.844	0.893	0.308	4e-28

>sp|Q8GYH6|RTNLP_ARATH Reticulon-like protein B16 OS=Arabidopsis thaliana GN=RTNLB16 PE=2 SV=1

 Score =  299 bits (766), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 143/227 (62%), Positives = 183/227 (80%), Gaps = 6/227 (2%)

Query: 12  DRDGDAAATSSSTTSAPAAGAGGFKLLNRHGTVHQFMGGGRTADVLLWKRRRVSFGVIVV 71
           D DGD    +   +S+       ++LL R  TVHQFMGGG+ AD+LLW+RR +S GVI++
Sbjct: 6   DIDGDFDGRNEGGSSSD------YRLLGRQITVHQFMGGGKAADLLLWRRRHLSLGVIII 59

Query: 72  ATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANFAAFRNKQLESLPELEVSEEMVNNA 131
           +TVAWLIFE SGLPFLSV SDVLL++I++ F  A  +AFRN+QL SLPEL +SEEMVN+A
Sbjct: 60  STVAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARVSAFRNRQLHSLPELVLSEEMVNSA 119

Query: 132 AASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITV 191
           AASFR+K+N+LL+MAHD+TVG DFRLFF+VV  LWLLSAIGSY S  TL YIGT+LS+T+
Sbjct: 120 AASFRIKLNHLLVMAHDVTVGNDFRLFFKVVICLWLLSAIGSYISLCTLLYIGTILSVTI 179

Query: 192 PALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRIPRTLSKDKVS 238
           PALYS+++++VD+ CG IH+ +S HYK+VDENVISR+  +LSKDK S
Sbjct: 180 PALYSKYQSKVDKCCGTIHRRLSHHYKIVDENVISRLSWSLSKDKDS 226

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUT9|RTNLB_ARATH Reticulon-like protein B2 OS=Arabidopsis thaliana GN=RTNLB2 PE=1 SV=1

 Score =  149 bits (376), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/202 (35%), Positives = 117/202 (57%)

Query: 35  FKLLNRHGTVHQFMGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVL 94
           ++L  R   VH+ +GGG+ AD+ +WK +++S GV   ATVAW++FE      L++   V+
Sbjct: 67  YRLFGRERPVHKVLGGGKPADIFMWKDKKMSGGVFGGATVAWVLFELMEYHLLTLLCHVM 126

Query: 95  LLLIVLMFFRANFAAFRNKQLESLPELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKD 154
           ++ + ++F  +N   F +K    +PE+ + EE +   A+  R++IN  +    +I  G+D
Sbjct: 127 IVALAVLFLWSNATMFIHKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLREIASGRD 186

Query: 155 FRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSIS 214
            + F   +A LW+LS +G  +SF TLAYI  +L  TVP  Y ++E +VD Y       + 
Sbjct: 187 IKKFLSAIAGLWVLSILGGCYSFLTLAYIALVLLFTVPLFYDKYEDKVDSYGEKAMAELK 246

Query: 215 QHYKVVDENVISRIPRTLSKDK 236
           + Y V+D  V S+IPR   KDK
Sbjct: 247 KQYAVLDAKVFSKIPRGPLKDK 268

Plays a role in the Agrobacterium-mediated plant transformation via its interaction with VirB2, the major component of the T-pilus.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6DBN4|RTNLF_ARATH Reticulon-like protein B6 OS=Arabidopsis thaliana GN=RTNLB6 PE=1 SV=1

 Score =  146 bits (369), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 76/229 (33%), Positives = 123/229 (53%)

Query: 1   MDNSADSCDIVDRDGDAAATSSSTTSAPAAGAGGFKLLNRHGTVHQFMGGGRTADVLLWK 60
           M+  AD     D    + +      S  A  A  ++L  R   VH+ +GGG  ADV LW+
Sbjct: 16  MEKIADKIHDHDSSSSSDSEHEKPESPSALKAKIYRLFGREKPVHKVLGGGLPADVFLWR 75

Query: 61  RRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANFAAFRNKQLESLPE 120
            +++S  V+ VAT  W++FE     FLS+   +L+  +  +F  +N  AF NK    +PE
Sbjct: 76  DKKLSASVLGVATAIWVLFELVEYHFLSLVCHILIFALAALFLLSNAHAFMNKTPPKIPE 135

Query: 121 LEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTL 180
           + + EE      ++ R ++N   ++   I +G+D + F  VV  LW++S +G++F+F TL
Sbjct: 136 IHIKEEHFLMIVSALRNELNQAFVILRSIALGRDLKKFLMVVFGLWIISVVGNWFNFLTL 195

Query: 181 AYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRIP 229
            YI  ++  TVP LY + E +VD       K + +HY V DE V+S++P
Sbjct: 196 VYICFVVLHTVPMLYEKHEDKVDPVAEKTLKELKKHYMVFDEKVLSKLP 244

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUR3|RTNLA_ARATH Reticulon-like protein B1 OS=Arabidopsis thaliana GN=RTNLB1 PE=1 SV=1

 Score =  146 bits (368), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 70/202 (34%), Positives = 117/202 (57%)

Query: 35  FKLLNRHGTVHQFMGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVL 94
           ++L  R   VH+ +GGG+ AD+ +WK +++S GV+  AT AW++FE      L++   V+
Sbjct: 71  YRLFGREQPVHKVLGGGKPADIFMWKNKKMSGGVLGGATAAWVVFELMEYHLLTLLCHVM 130

Query: 95  LLLIVLMFFRANFAAFRNKQLESLPELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKD 154
           ++++ ++F  +N   F NK    +PE+ + EE +   A+  R++IN       +I  G+D
Sbjct: 131 IVVLAVLFLWSNATMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIASGRD 190

Query: 155 FRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSIS 214
            + F   +A LW+LS +G  F+F TLAYI  +L  TVP  Y ++E +VD         + 
Sbjct: 191 LKKFLIAIAGLWVLSILGGCFNFLTLAYIALVLLFTVPLAYDKYEDKVDPLGEKAMIELK 250

Query: 215 QHYKVVDENVISRIPRTLSKDK 236
           + Y V+DE V+S+IP    K+K
Sbjct: 251 KQYAVLDEKVLSKIPLGPLKNK 272

Plays a role in the Agrobacterium-mediated plant transformation via its interaction with VirB2, the major component of the T-pilus.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FFS0|RTNLD_ARATH Reticulon-like protein B4 OS=Arabidopsis thaliana GN=RTNLB4 PE=1 SV=1

 Score =  141 bits (356), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 73/207 (35%), Positives = 117/207 (56%), Gaps = 5/207 (2%)

Query: 35  FKLLNRHGTVHQFMGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVL 94
           ++L  R   VH+ +GGG+ AD+ LW+ ++VS GV+   T +W++FE      L+      
Sbjct: 50  YRLFGREKPVHKVLGGGKPADIFLWRNKKVSGGVLGAVTASWVLFELFEYHLLAFLCHFA 109

Query: 95  LLLIVLMFFRANFAAFRNKQLESLPELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKD 154
           +  +  +F  +N   F +K    +PE+ + E+ +    +  R++IN  L +  +I  GKD
Sbjct: 110 IFALAALFLWSNACTFIHKSTPHIPEVHIPEDPILQLVSGLRIEINRGLTLLRNIASGKD 169

Query: 155 FRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSIS 214
            + F  V+A LW+LS IGS ++F TL Y  T+L  T+P LY ++E +VD Y     + I 
Sbjct: 170 VKKFILVIAGLWVLSIIGSCYNFLTLFYTATVLLFTIPVLYEKYEDKVDAYGEKAMREIK 229

Query: 215 QHYKVVDE----NVISRIPR-TLSKDK 236
           + Y V+DE     VIS+IPR  L+K K
Sbjct: 230 KQYAVLDEKVLRKVISKIPRGALNKKK 256

Plays a role in the Agrobacterium-mediated plant transformation via its interaction with VirB2, the major component of the T-pilus.

Arabidopsis thaliana (taxid: 3702)

>sp|O82352|RTNLE_ARATH Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1 SV=1

 Score =  139 bits (349), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 71/204 (34%), Positives = 114/204 (55%)

Query: 26  SAPAAGAGGFKLLNRHGTVHQFMGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLP 85
           S  A  A  +++  R   VH+ +GGG+ ADV LW+ +++S  V+ VAT  W++FE     
Sbjct: 41  SPSAVKAKIYRMFGREKPVHKVLGGGKPADVFLWRDKKLSGAVLGVATAIWVLFELVEYH 100

Query: 86  FLSVCSDVLLLLIVLMFFRANFAAFRNKQLESLPELEVSEEMVNNAAASFRVKINYLLLM 145
            LS+   + +L +  +F  +N     NK    +PE+ V EE     A+S R ++N   ++
Sbjct: 101 LLSLLCHISILALGGLFLWSNAHTLINKTSPQIPEIHVPEEAFLVVASSLRNELNQAFVI 160

Query: 146 AHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRY 205
              I +G+D + F  VV  LW++S +G++F+F TL YI  ++  TVP LY + E +VD  
Sbjct: 161 LRSIALGRDLKKFLMVVVGLWIISVVGNWFNFLTLVYICFVILHTVPMLYEKHEDKVDPL 220

Query: 206 CGMIHKSISQHYKVVDENVISRIP 229
                K + + Y V DE V+S+IP
Sbjct: 221 AEKAMKELQKQYVVFDEKVLSKIP 244

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SH59|RTNLC_ARATH Reticulon-like protein B3 OS=Arabidopsis thaliana GN=RTNLB3 PE=1 SV=1

 Score =  137 bits (346), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 66/200 (33%), Positives = 117/200 (58%)

Query: 35  FKLLNRHGTVHQFMGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVL 94
           ++L  R   +H+  GGG+ AD+ LW+ ++VS GV+  ATV+W++FE      L++   + 
Sbjct: 46  YRLFGREQPLHKLFGGGKPADIFLWRNKKVSGGVLGAATVSWILFELLEYNLLTLFGHIS 105

Query: 95  LLLIVLMFFRANFAAFRNKQLESLPELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKD 154
           +L + ++F  ++ + F +K    +PE+ + E++V   A+  R++IN    +  DI  G+D
Sbjct: 106 ILALAVLFLWSSASTFIHKSPLHIPEVHIPEDVVLQLASGLRIEINRGFTVLRDIASGRD 165

Query: 155 FRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSIS 214
            + F  V+A LW+LS +GS  +F TL YI T+L  T+P LY ++E +VD +     + I 
Sbjct: 166 LKKFLLVIAGLWVLSKVGSSCNFLTLIYIATVLLFTIPVLYEKYEDKVDDFGEKAMREIK 225

Query: 215 QHYKVVDENVISRIPRTLSK 234
           + Y   D  V+S++   + K
Sbjct: 226 KQYVEFDVKVLSKVMSKIPK 245

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NPD8|RTNLJ_ARATH Reticulon-like protein B10 OS=Arabidopsis thaliana GN=RTNLB10 PE=2 SV=1

 Score =  134 bits (336), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 64/186 (34%), Positives = 110/186 (59%)

Query: 43  TVHQFMGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMF 102
           +VHQ +  G  AD+++WK RR  F ++   T+ W +FE+ G  F     +  LL +V++F
Sbjct: 4   SVHQSIRFGSVADLIMWKNRRGGFLLLGSTTLLWFLFEKCGYSFFPFVVNTQLLSVVILF 63

Query: 103 FRANFAAFRNKQLESLPELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVV 162
             A  A   N+ +  LP LE++EE V   A + RV IN +L +A +I VG++ +  F+V 
Sbjct: 64  LWAKSAILFNRPMPQLPNLEITEEFVFMVADAIRVWINTVLAVAREIYVGRNAKQLFRVS 123

Query: 163 AYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDE 222
             LW +S +G++ +F T+ Y+G +LS+ +P LY R++  +D    + H+ I   Y+ +DE
Sbjct: 124 VVLWTVSFVGNFLNFLTILYLGVVLSLLIPFLYERYQDLIDEKLSLTHRVIQTQYRKIDE 183

Query: 223 NVISRI 228
            ++ +I
Sbjct: 184 RLLQKI 189

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LT71|RTNLK_ARATH Reticulon-like protein B11 OS=Arabidopsis thaliana GN=RTNLB11 PE=2 SV=1

 Score =  132 bits (331), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 68/192 (35%), Positives = 107/192 (55%), Gaps = 8/192 (4%)

Query: 45  HQFMGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFR 104
           HQ +G G  AD+LLW+ R  +  +++ +T  W +FER+G   LS  S+VLLLL+ + F  
Sbjct: 14  HQSLGAGSVADLLLWRNRTGAVILLISSTGFWFLFERAGYNLLSFVSNVLLLLVAIFFLW 73

Query: 105 ANFAAFRNKQLESLPELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAY 164
           A  A   N+ L  +P +E+ EE  N AA   RV INY+L +A DIT+ ++     QV   
Sbjct: 74  AKSATVLNRPLPPVPNMEIPEEFANKAADDLRVWINYVLSIASDITIARNPIRLLQVSLV 133

Query: 165 LWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENV 224
           LW +S +G+  +  TL YIG LLS++ P +Y +++  +D       K +         N+
Sbjct: 134 LWAISYVGTLINSLTLVYIGVLLSLSFPIVYEKYQDHIDEKVNSTSKFV--------RNI 185

Query: 225 ISRIPRTLSKDK 236
             + P  ++K+K
Sbjct: 186 SRKFPLPINKEK 197

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LJQ5|RTNLI_ARATH Reticulon-like protein B9 OS=Arabidopsis thaliana GN=RTNLB9 PE=2 SV=1

 Score =  124 bits (312), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 62/201 (30%), Positives = 109/201 (54%)

Query: 36  KLLNRHGTVHQFMGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLL 95
           KL  R  ++H   GGG+ AD+LLW+  +++  +++  ++ W + E     F+++     +
Sbjct: 22  KLFTRQRSIHSIFGGGKVADILLWREPKIAATLVIGVSILWFLMEVVEYNFITLICHASM 81

Query: 96  LLIVLMFFRANFAAFRNKQLESLPELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDF 155
             ++  F  +  + F N +   +PE+ + E      A SF V+ N +L    D+  G+D 
Sbjct: 82  TSMLFFFIWSTASDFLNWERPLIPEVVLDESSFKQLARSFHVRFNQILTKLLDVACGRDP 141

Query: 156 RLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQ 215
            LFF     L+++S IG+YF+F  L +IG +   T+P +Y  +E  VD   G + + + +
Sbjct: 142 PLFFLTTISLYIVSIIGTYFNFVNLLFIGFVSMQTLPVMYEMYEDDVDTAAGKLMRKMKK 201

Query: 216 HYKVVDENVISRIPRTLSKDK 236
            YK VD NV+S+IPR   K+K
Sbjct: 202 LYKKVDTNVLSKIPRGTVKNK 222

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	238
224144977	244	predicted protein [Populus trichocarpa]	1.0	0.975	0.688	1e-83
359486460	227	PREDICTED: reticulon-like protein B16-li	0.945	0.991	0.690	3e-83
42572359	226	reticulon-like protein B16 [Arabidopsis	0.928	0.977	0.629	6e-79
145332022	227	reticulon-like protein B16 [Arabidopsis	0.928	0.973	0.631	4e-78
238479721	249	reticulon-like protein B16 [Arabidopsis	0.928	0.887	0.576	1e-73
297833878	224	predicted protein [Arabidopsis lyrata su	0.915	0.973	0.609	2e-73
334185244	194	reticulon-like protein B16 [Arabidopsis	0.768	0.943	0.683	3e-70
145362438	193	reticulon-like protein B16 [Arabidopsis	0.768	0.948	0.683	4e-70
226496479	228	seed maturation protein [Zea mays] gi|19	0.907	0.947	0.571	3e-69
449441250	224	PREDICTED: reticulon-like protein B16-li	0.899	0.955	0.619	4e-69

>gi|224144977|ref|XP_002325482.1| predicted protein [Populus trichocarpa] gi|222862357|gb|EEE99863.1| predicted protein [Populus trichocarpa]

 Score =  315 bits (807), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 168/244 (68%), Positives = 203/244 (83%), Gaps = 6/244 (2%)

Query: 1   MDNSADSCDIVDRDG------DAAATSSSTTSAPAAGAGGFKLLNRHGTVHQFMGGGRTA 54
           MDNS+D  D V  +G      DAAA++SS  S+P A   G++L +R  ++HQ MG G+ A
Sbjct: 1   MDNSSDVIDTVSGNGGGDSRNDAAASTSSAPSSPRAITSGYRLFDRQDSLHQLMGAGKAA 60

Query: 55  DVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANFAAFRNKQ 114
           DVLLWK   VSFGVI+VATV+W IFERSGLPFL++CSDVLL+LIVL+F RAN A   NKQ
Sbjct: 61  DVLLWKWWHVSFGVIMVATVSWFIFERSGLPFLTICSDVLLILIVLLFVRANIADMINKQ 120

Query: 115 LESLPELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSY 174
           L+SLPEL +SEEMVN+AAASFRVKIN +LLMAHDIT+GKDFRLFF+VV +LWLLS +GSY
Sbjct: 121 LQSLPELVLSEEMVNSAAASFRVKINNVLLMAHDITLGKDFRLFFKVVVFLWLLSTVGSY 180

Query: 175 FSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRIPRTLSK 234
           FSFFTLAYIGT+LSIT+PALYSR+E RVDR CG+IH+ +S HYK+VDE+VISRIP++LSK
Sbjct: 181 FSFFTLAYIGTILSITIPALYSRYEERVDRCCGIIHRKLSHHYKIVDESVISRIPQSLSK 240

Query: 235 DKVS 238
           DK S
Sbjct: 241 DKDS 244

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486460|ref|XP_002275157.2| PREDICTED: reticulon-like protein B16-like [Vitis vinifera] gi|297736488|emb|CBI25359.3| unnamed protein product [Vitis vinifera]

 Score =  314 bits (804), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 163/236 (69%), Positives = 194/236 (82%), Gaps = 11/236 (4%)

Query: 1   MDNSADSCDIVDRDGDAAATSSSTTSAPAAGAGGFKLLNRHGTVHQFMGGGRTADVLLWK 60
           MD+S D  +    DGDA     ST+  P     G++L +R  ++HQ MGGG+ ADVLLWK
Sbjct: 1   MDSSEDPSNAC-VDGDA-----STSGGP-----GYRLFDRRSSIHQIMGGGKAADVLLWK 49

Query: 61  RRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANFAAFRNKQLESLPE 120
           RRRVS G IVVATVAW++FERSGL FLS+CSDVLL+LIV++F RAN+AAFRNKQL+SLPE
Sbjct: 50  RRRVSCGTIVVATVAWILFERSGLSFLSICSDVLLILIVVLFLRANYAAFRNKQLKSLPE 109

Query: 121 LEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTL 180
           LE+SEEMVN+ A SFRVKINYLLLMAHDIT+GKDFRLFF+VV  LWLLS +GS FSFFTL
Sbjct: 110 LELSEEMVNSVAGSFRVKINYLLLMAHDITLGKDFRLFFKVVLGLWLLSVVGSSFSFFTL 169

Query: 181 AYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRIPRTLSKDK 236
           AYIGT++SITVPALYS++E  VD+Y G+IH+  S+HYK+VDENVI RIP  LSKDK
Sbjct: 170 AYIGTIISITVPALYSKYEEHVDKYFGIIHRKFSKHYKLVDENVIRRIPPGLSKDK 225

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42572359|ref|NP_974275.1| reticulon-like protein B16 [Arabidopsis thaliana] gi|75151434|sp|Q8GYH6.1|RTNLP_ARATH RecName: Full=Reticulon-like protein B16; Short=AtRTNLB16 gi|26450318|dbj|BAC42275.1| unknown protein [Arabidopsis thaliana] gi|28827594|gb|AAO50641.1| unknown protein [Arabidopsis thaliana] gi|332641451|gb|AEE74972.1| reticulon-like protein B16 [Arabidopsis thaliana]

 Score =  299 bits (766), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 143/227 (62%), Positives = 183/227 (80%), Gaps = 6/227 (2%)

Query: 12  DRDGDAAATSSSTTSAPAAGAGGFKLLNRHGTVHQFMGGGRTADVLLWKRRRVSFGVIVV 71
           D DGD    +   +S+       ++LL R  TVHQFMGGG+ AD+LLW+RR +S GVI++
Sbjct: 6   DIDGDFDGRNEGGSSSD------YRLLGRQITVHQFMGGGKAADLLLWRRRHLSLGVIII 59

Query: 72  ATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANFAAFRNKQLESLPELEVSEEMVNNA 131
           +TVAWLIFE SGLPFLSV SDVLL++I++ F  A  +AFRN+QL SLPEL +SEEMVN+A
Sbjct: 60  STVAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARVSAFRNRQLHSLPELVLSEEMVNSA 119

Query: 132 AASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITV 191
           AASFR+K+N+LL+MAHD+TVG DFRLFF+VV  LWLLSAIGSY S  TL YIGT+LS+T+
Sbjct: 120 AASFRIKLNHLLVMAHDVTVGNDFRLFFKVVICLWLLSAIGSYISLCTLLYIGTILSVTI 179

Query: 192 PALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRIPRTLSKDKVS 238
           PALYS+++++VD+ CG IH+ +S HYK+VDENVISR+  +LSKDK S
Sbjct: 180 PALYSKYQSKVDKCCGTIHRRLSHHYKIVDENVISRLSWSLSKDKDS 226

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145332022|ref|NP_001078133.1| reticulon-like protein B16 [Arabidopsis thaliana] gi|332641453|gb|AEE74974.1| reticulon-like protein B16 [Arabidopsis thaliana]

 Score =  296 bits (759), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 144/228 (63%), Positives = 183/228 (80%), Gaps = 7/228 (3%)

Query: 12  DRDGDAAATSSSTTSAPAAGAGGFKLLNRHGTVHQFMGGGRTADVLLWKRRRVSFGVIVV 71
           D DGD    +   +S+       ++LL R  TVHQFMGGG+ AD+LLW+RR +S GVI++
Sbjct: 6   DIDGDFDGRNEGGSSSD------YRLLGRQITVHQFMGGGKAADLLLWRRRHLSLGVIII 59

Query: 72  ATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANFAAFRNKQLESLPELEVSEEMVNNA 131
           +TVAWLIFE SGLPFLSV SDVLL++I++ F  A  +AFRN+QL SLPEL +SEEMVN+A
Sbjct: 60  STVAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARVSAFRNRQLHSLPELVLSEEMVNSA 119

Query: 132 AASFRVKINYLLLMAHDITVGKDFRLFF-QVVAYLWLLSAIGSYFSFFTLAYIGTLLSIT 190
           AASFR+K+N+LL+MAHD+TVG DFRLFF QVV  LWLLSAIGSY S  TL YIGT+LS+T
Sbjct: 120 AASFRIKLNHLLVMAHDVTVGNDFRLFFKQVVICLWLLSAIGSYISLCTLLYIGTILSVT 179

Query: 191 VPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRIPRTLSKDKVS 238
           +PALYS+++++VD+ CG IH+ +S HYK+VDENVISR+  +LSKDK S
Sbjct: 180 IPALYSKYQSKVDKCCGTIHRRLSHHYKIVDENVISRLSWSLSKDKDS 227

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238479721|ref|NP_001154603.1| reticulon-like protein B16 [Arabidopsis thaliana] gi|332641454|gb|AEE74975.1| reticulon-like protein B16 [Arabidopsis thaliana]

 Score =  282 bits (721), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 144/250 (57%), Positives = 183/250 (73%), Gaps = 29/250 (11%)

Query: 12  DRDGDAAATSSSTTSAPAAGAGGFKLLNRHGTVHQFMGGGR------------------- 52
           D DGD    +   +S+       ++LL R  TVHQFMGGG+                   
Sbjct: 6   DIDGDFDGRNEGGSSSD------YRLLGRQITVHQFMGGGKGEFFFPEFHFGYSRKWKTW 59

Query: 53  ---TADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANFAA 109
               AD+LLW+RR +S GVI+++TVAWLIFE SGLPFLSV SDVLL++I++ F  A  +A
Sbjct: 60  QFIAADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARVSA 119

Query: 110 FRNKQLESLPELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFF-QVVAYLWLL 168
           FRN+QL SLPEL +SEEMVN+AAASFR+K+N+LL+MAHD+TVG DFRLFF QVV  LWLL
Sbjct: 120 FRNRQLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFKQVVICLWLL 179

Query: 169 SAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRI 228
           SAIGSY S  TL YIGT+LS+T+PALYS+++++VD+ CG IH+ +S HYK+VDENVISR+
Sbjct: 180 SAIGSYISLCTLLYIGTILSVTIPALYSKYQSKVDKCCGTIHRRLSHHYKIVDENVISRL 239

Query: 229 PRTLSKDKVS 238
             +LSKDK S
Sbjct: 240 SWSLSKDKDS 249

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297833878|ref|XP_002884821.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297330661|gb|EFH61080.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  281 bits (718), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 139/228 (60%), Positives = 177/228 (77%), Gaps = 10/228 (4%)

Query: 12  DRDGDAAATSSSTTSAPAAGAGGFKLLNRHGTVHQFMGGGRTADVLLWKRRRVSFGVIVV 71
           D DGD    +   +S+       ++LL R  TVHQFMG    AD+LLW+RR +S GVI++
Sbjct: 6   DIDGDCDGRNEGGSSSD------YRLLGRQVTVHQFMGA---ADLLLWRRRHLSLGVIII 56

Query: 72  ATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANFAAFRNKQLESLPELEVSEEMVNNA 131
           +TVAWLIFE SGLPFLSV SDVLL+ I++ F  A  +AFR +QL SLPEL +SEEMVN+A
Sbjct: 57  STVAWLIFEFSGLPFLSVSSDVLLIGIIISFVHARVSAFRKRQLHSLPELVLSEEMVNSA 116

Query: 132 AASFRVKINYLLLMAHDITVGKDFRLFF-QVVAYLWLLSAIGSYFSFFTLAYIGTLLSIT 190
           AASFR+K+N+LL+MAHD+TVG DFRLFF QVV  LWLLSAIGSY S  TL YIGT+LS+T
Sbjct: 117 AASFRIKLNHLLVMAHDVTVGNDFRLFFKQVVICLWLLSAIGSYISLCTLVYIGTILSVT 176

Query: 191 VPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRIPRTLSKDKVS 238
           +PALYS+++++VD+ CG IH+ +S HYK+VDENVISR+  +L+ DK S
Sbjct: 177 IPALYSKYQSKVDKCCGTIHRRLSHHYKIVDENVISRLSWSLTNDKDS 224

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334185244|ref|NP_001189857.1| reticulon-like protein B16 [Arabidopsis thaliana] gi|332641455|gb|AEE74976.1| reticulon-like protein B16 [Arabidopsis thaliana]

 Score =  270 bits (690), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 125/183 (68%), Positives = 159/183 (86%)

Query: 54  ADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANFAAFRNK 113
           AD+LLW+RR +S GVI+++TVAWLIFE SGLPFLSV SDVLL++I++ F  A  +AFRN+
Sbjct: 10  ADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARVSAFRNR 69

Query: 114 QLESLPELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGS 173
           QL SLPEL +SEEMVN+AAASFR+K+N+LL+MAHD+TVG DFRLFF+VV  LWLLSAIGS
Sbjct: 70  QLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFKVVICLWLLSAIGS 129

Query: 174 YFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRIPRTLS 233
           Y S  TL YIGT+LS+T+PALYS+++++VD+ CG IH+ +S HYK+VDENVISR+  +LS
Sbjct: 130 YISLCTLLYIGTILSVTIPALYSKYQSKVDKCCGTIHRRLSHHYKIVDENVISRLSWSLS 189

Query: 234 KDK 236
           KDK
Sbjct: 190 KDK 192

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145362438|ref|NP_974276.3| reticulon-like protein B16 [Arabidopsis thaliana] gi|110743729|dbj|BAE99701.1| hypothetical protein [Arabidopsis thaliana] gi|332641452|gb|AEE74973.1| reticulon-like protein B16 [Arabidopsis thaliana]

 Score =  270 bits (689), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 125/183 (68%), Positives = 159/183 (86%)

Query: 54  ADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANFAAFRNK 113
           AD+LLW+RR +S GVI+++TVAWLIFE SGLPFLSV SDVLL++I++ F  A  +AFRN+
Sbjct: 9   ADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARVSAFRNR 68

Query: 114 QLESLPELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGS 173
           QL SLPEL +SEEMVN+AAASFR+K+N+LL+MAHD+TVG DFRLFF+VV  LWLLSAIGS
Sbjct: 69  QLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFKVVICLWLLSAIGS 128

Query: 174 YFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRIPRTLS 233
           Y S  TL YIGT+LS+T+PALYS+++++VD+ CG IH+ +S HYK+VDENVISR+  +LS
Sbjct: 129 YISLCTLLYIGTILSVTIPALYSKYQSKVDKCCGTIHRRLSHHYKIVDENVISRLSWSLS 188

Query: 234 KDK 236
           KDK
Sbjct: 189 KDK 191

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226496479|ref|NP_001149392.1| seed maturation protein [Zea mays] gi|195626916|gb|ACG35288.1| seed maturation protein [Zea mays] gi|223947427|gb|ACN27797.1| unknown [Zea mays] gi|413955798|gb|AFW88447.1| Seed maturation protein isoform 1 [Zea mays] gi|413955799|gb|AFW88448.1| Seed maturation protein isoform 2 [Zea mays]

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 128/224 (57%), Positives = 171/224 (76%), Gaps = 8/224 (3%)

Query: 16  DAAATSSSTTSA---PAAGAGGFKLLNRHGTVHQFMGGGRTADVLLWKRRRVSFGVIVVA 72
           +AAA      SA    + GAGG++      +VHQ  GGG+ AD++LW+R RV+FGVI  A
Sbjct: 8   EAAANGGIEGSADPCSSGGAGGYRR-----SVHQIAGGGKAADIILWRRARVTFGVIFGA 62

Query: 73  TVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANFAAFRNKQLESLPELEVSEEMVNNAA 132
           T+AW +FE+SGL  L++CSD+LL+LIVL F R   A   ++Q   LPEL +SEEMV+NAA
Sbjct: 63  TLAWWLFEKSGLSLLTICSDILLILIVLQFIRVKIAGLLDRQPRPLPELVLSEEMVSNAA 122

Query: 133 ASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVP 192
           ASFRVK+N +L++AHDIT+GKDFRLFFQVV  LWLLS IG++ S  TLAYIGT+  +T+P
Sbjct: 123 ASFRVKVNSMLMIAHDITLGKDFRLFFQVVIVLWLLSVIGNFCSSITLAYIGTVALVTMP 182

Query: 193 ALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRIPRTLSKDK 236
           ALY++++  VDRY GM++++IS+HYK+VDENVISR+PR   +DK
Sbjct: 183 ALYNKYQRPVDRYAGMVYRNISRHYKIVDENVISRLPRRFIRDK 226

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441250|ref|XP_004138395.1| PREDICTED: reticulon-like protein B16-like [Cucumis sativus] gi|449514721|ref|XP_004164461.1| PREDICTED: reticulon-like protein B16-like [Cucumis sativus]

 Score =  267 bits (682), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 135/218 (61%), Positives = 171/218 (78%), Gaps = 4/218 (1%)

Query: 23  STTSAPAAGAGGFKL----LNRHGTVHQFMGGGRTADVLLWKRRRVSFGVIVVATVAWLI 78
           S T+A +A A G  +     +R   +HQ MGGG+ AD+LLWK+  VS GV+VV+TV WL+
Sbjct: 5   SETAAGSAEADGKDIPCTSCDRQTLLHQSMGGGKAADILLWKQWHVSIGVLVVSTVFWLL 64

Query: 79  FERSGLPFLSVCSDVLLLLIVLMFFRANFAAFRNKQLESLPELEVSEEMVNNAAASFRVK 138
            E SGLP L+ CSDVLL+L+VL+F RANFAAFRNKQL++LP+L +SEE VNN AAS R K
Sbjct: 65  IEHSGLPLLTTCSDVLLILVVLLFLRANFAAFRNKQLQTLPQLVLSEEFVNNVAASLRAK 124

Query: 139 INYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRF 198
           IN  LLMAHDITVG DF+LFF++V  LWLLS +GSY SFFT AY+GT++SIT+PALYS++
Sbjct: 125 INNTLLMAHDITVGNDFKLFFRMVIGLWLLSVVGSYVSFFTFAYVGTIISITIPALYSKY 184

Query: 199 EARVDRYCGMIHKSISQHYKVVDENVISRIPRTLSKDK 236
           +  VDRYCGMI +   +HY+V+DE+V SR+P  LSKDK
Sbjct: 185 DKHVDRYCGMIRQQFRKHYRVMDESVFSRLPGGLSKDK 222

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	238
TAIR|locus:1005716554	249	AT3G10915 [Arabidopsis thalian	0.777	0.742	0.602	2e-61
TAIR|locus:2128238	271	BTI2 "VIRB2-interacting protei	0.848	0.745	0.321	6.4e-28
TAIR|locus:2160447	257	BTI3 "VIRB2-interacting protei	0.957	0.887	0.305	1.7e-27
TAIR|locus:2128494	275	BTI1 "VIRB2-interacting protei	0.983	0.850	0.285	1.9e-26
TAIR|locus:2080315	203	AT3G54120 "AT3G54120" [Arabido	0.689	0.807	0.347	1.1e-25
TAIR|locus:2062882	255	AT2G46170 [Arabidopsis thalian	0.848	0.792	0.306	5.9e-25
TAIR|locus:2049077	201	AT2G15280 "AT2G15280" [Arabido	0.781	0.925	0.290	6.8e-24
TAIR|locus:2089663	225	AT3G18260 "AT3G18260" [Arabido	0.844	0.893	0.278	8.7e-24
TAIR|locus:2082772	264	AT3G61560 [Arabidopsis thalian	0.277	0.25	0.402	1.8e-13
TAIR|locus:2046783	206	RTNLB13 "AT2G23640" [Arabidops	0.718	0.830	0.187	6.4e-12

TAIR|locus:1005716554 AT3G10915 [Arabidopsis thaliana (taxid:3702)]

 Score = 579 (208.9 bits), Expect = 2.0e-61, Sum P(2) = 2.0e-61
 Identities = 112/186 (60%), Positives = 143/186 (76%)

Query:    54 ADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMXXXXXXXXXXXK 113
             AD+LLW+RR +S GVI+++TVAWLIFE SGLPFLSV SDVLL++I++            +
Sbjct:    64 ADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARVSAFRNR 123

Query:   114 QXXXXXXXXXXXXMVNNAAASFRVKINYLLLMAHDITVGKDFRLFF-QVVAYLWLLSAIG 172
             Q            MVN+AAASFR+K+N+LL+MAHD+TVG DFRLFF QVV  LWLLSAIG
Sbjct:   124 QLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFKQVVICLWLLSAIG 183

Query:   173 SYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRIPRTL 232
             SY S  TL YIGT+LS+T+PALYS+++++VD+ CG IH+ +S HYK+VDENVISR+  +L
Sbjct:   184 SYISLCTLLYIGTILSVTIPALYSKYQSKVDKCCGTIHRRLSHHYKIVDENVISRLSWSL 243

Query:   233 SKDKVS 238
             SKDK S
Sbjct:   244 SKDKDS 249

GO:0005634 "nucleus" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2128238 BTI2 "VIRB2-interacting protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 65/202 (32%), Positives = 105/202 (51%)

Query:    35 FKLLNRHGTVHQFMGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVL 94
             ++L  R   VH+ +GGG+ AD+ +WK +++S GV   ATVAW++FE      L++   V+
Sbjct:    67 YRLFGRERPVHKVLGGGKPADIFMWKDKKMSGGVFGGATVAWVLFELMEYHLLTLLCHVM 126

Query:    95 LLLIVLMXXXXXXXXXXXKQXXXXXXXXXXXXMVNNAAASFRVKINYLLLMAHDITVGKD 154
             ++ + ++           K              +   A+  R++IN  +    +I  G+D
Sbjct:   127 IVALAVLFLWSNATMFIHKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLREIASGRD 186

Query:   155 FRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSIS 214
              + F   +A LW+LS +G  +SF TLAYI  +L  TVP  Y ++E +VD Y       + 
Sbjct:   187 IKKFLSAIAGLWVLSILGGCYSFLTLAYIALVLLFTVPLFYDKYEDKVDSYGEKAMAELK 246

Query:   215 QHYKVVDENVISRIPRTLSKDK 236
             + Y V+D  V S+IPR   KDK
Sbjct:   247 KQYAVLDAKVFSKIPRGPLKDK 268

GO:0005634 "nucleus" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0071458 "integral to cytosolic side of endoplasmic reticulum membrane" evidence=IDA

GO:0071782 "endoplasmic reticulum tubular network" evidence=IDA

GO:0071786 "endoplasmic reticulum tubular network organization" evidence=IMP

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0010286 "heat acclimation" evidence=RCA

TAIR|locus:2160447 BTI3 "VIRB2-interacting protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 72/236 (30%), Positives = 111/236 (47%)

Query:     6 DSCDIVDRDGDXXXXXXXXXXXXXXXXXXFKLLNRHGTVHQFMGGGRTADVLLWKRRRVS 65
             DS  + D D D                  ++L  R   VH+ +GGG+ AD+ LW+ ++VS
Sbjct:    24 DSSSLSDSDDDKKSTSSSSSSFKSKI---YRLFGREKPVHKVLGGGKPADIFLWRNKKVS 80

Query:    66 FGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMXXXXXXXXXXXKQXXXXXXXXXXX 125
              GV+   T +W++FE      L+      +  +  +           K            
Sbjct:    81 GGVLGAVTASWVLFELFEYHLLAFLCHFAIFALAALFLWSNACTFIHKSTPHIPEVHIPE 140

Query:   126 XMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGT 185
               +    +  R++IN  L +  +I  GKD + F  V+A LW+LS IGS ++F TL Y  T
Sbjct:   141 DPILQLVSGLRIEINRGLTLLRNIASGKDVKKFILVIAGLWVLSIIGSCYNFLTLFYTAT 200

Query:   186 LLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENV----ISRIPR-TLSKDK 236
             +L  T+P LY ++E +VD Y     + I + Y V+DE V    IS+IPR  L+K K
Sbjct:   201 VLLFTIPVLYEKYEDKVDAYGEKAMREIKKQYAVLDEKVLRKVISKIPRGALNKKK 256

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0071458 "integral to cytosolic side of endoplasmic reticulum membrane" evidence=IDA

GO:0071782 "endoplasmic reticulum tubular network" evidence=IDA

GO:0071786 "endoplasmic reticulum tubular network organization" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2128494 BTI1 "VIRB2-interacting protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 67/235 (28%), Positives = 113/235 (48%)

Query:     2 DNSADSCDIVDRDGDXXXXXXXXXXXXXXXXXXFKLLNRHGTVHQFMGGGRTADVLLWKR 61
             D+S+ S    D D +                  ++L  R   VH+ +GGG+ AD+ +WK 
Sbjct:    39 DSSSSSSSSDDED-EKKKTKKPSSPSSSMKSKVYRLFGREQPVHKVLGGGKPADIFMWKN 97

Query:    62 RRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMXXXXXXXXXXXKQXXXXXXX 121
             +++S GV+  AT AW++FE      L++   V+++++ ++           K        
Sbjct:    98 KKMSGGVLGGATAAWVVFELMEYHLLTLLCHVMIVVLAVLFLWSNATMFINKSPPKIPEV 157

Query:   122 XXXXXMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLA 181
                   +   A+  R++IN       +I  G+D + F   +A LW+LS +G  F+F TLA
Sbjct:   158 HIPEEPILQLASGLRIEINRGFSSLREIASGRDLKKFLIAIAGLWVLSILGGCFNFLTLA 217

Query:   182 YIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRIPRTLSKDK 236
             YI  +L  TVP  Y ++E +VD         + + Y V+DE V+S+IP    K+K
Sbjct:   218 YIALVLLFTVPLAYDKYEDKVDPLGEKAMIELKKQYAVLDEKVLSKIPLGPLKNK 272

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0071458 "integral to cytosolic side of endoplasmic reticulum membrane" evidence=IDA

GO:0071782 "endoplasmic reticulum tubular network" evidence=IDA

GO:0071786 "endoplasmic reticulum tubular network organization" evidence=IMP

TAIR|locus:2080315 AT3G54120 "AT3G54120" [Arabidopsis thaliana (taxid:3702)]

 Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
 Identities = 57/164 (34%), Positives = 89/164 (54%)

Query:    36 KLLNRHGTVHQFMGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLL 95
             KL NR  T+H+ +GGG  ADV+LW+++ VS G++ V   +W++FE       ++ S VLL
Sbjct:     7 KLFNRDRTIHEILGGGIVADVMLWRKKNVSVGIVTVTIASWMVFEAFAYTIFTLISSVLL 66

Query:    96 LLIVLMXXXXXXXXXXXKQXXXXXXXXXXXXMVNNAAASFRVKINYLLLMAHDITVGKDF 155
             LL+ ++           +             M   A+   R+ +N LL ++HDI + +D 
Sbjct:    67 LLLSILFLWSKSASILNRPSPPLPEFQISEAMAEEASIWLRIHVNKLLQVSHDIAMARDS 126

Query:   156 RLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFE 199
              L+ +V   L+LLS IGS   F TL +   L+ +TVPA Y R+E
Sbjct:   127 ELYTKVAVSLFLLSLIGSLMDFQTLCHTSVLVVMTVPAFYERYE 170

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2062882 AT2G46170 [Arabidopsis thaliana (taxid:3702)]

 Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 62/202 (30%), Positives = 102/202 (50%)

Query:    35 FKLLNRHGTVHQFMGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVL 94
             +++  R   VH+ +GGG+ ADV LW+ +++S  V+ VAT  W++FE      LS+   + 
Sbjct:    50 YRMFGREKPVHKVLGGGKPADVFLWRDKKLSGAVLGVATAIWVLFELVEYHLLSLLCHIS 109

Query:    95 LLLIVLMXXXXXXXXXXXKQXXXXXXXXXXXXMVNNAAASFRVKINYLLLMAHDITVGKD 154
             +L +  +           K                  A+S R ++N   ++   I +G+D
Sbjct:   110 ILALGGLFLWSNAHTLINKTSPQIPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRD 169

Query:   155 FRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSIS 214
              + F  VV  LW++S +G++F+F TL YI  ++  TVP LY + E +VD       K + 
Sbjct:   170 LKKFLMVVVGLWIISVVGNWFNFLTLVYICFVILHTVPMLYEKHEDKVDPLAEKAMKELQ 229

Query:   215 QHYKVVDENVISRIPRTLSKDK 236
             + Y V DE V+S+IP    K K
Sbjct:   230 KQYVVFDEKVLSKIPIASLKAK 251

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0080167 "response to karrikin" evidence=IEP

GO:0006007 "glucose catabolic process" evidence=RCA

TAIR|locus:2049077 AT2G15280 "AT2G15280" [Arabidopsis thaliana (taxid:3702)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 54/186 (29%), Positives = 97/186 (52%)

Query:    43 TVHQFMGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMX 102
             +VHQ +  G  AD+++WK RR  F ++   T+ W +FE+ G  F     +  LL +V++ 
Sbjct:     4 SVHQSIRFGSVADLIMWKNRRGGFLLLGSTTLLWFLFEKCGYSFFPFVVNTQLLSVVILF 63

Query:   103 XXXXXXXXXXKQXXXXXXXXXXXXMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVV 162
                       +              V   A + RV IN +L +A +I VG++ +  F+V 
Sbjct:    64 LWAKSAILFNRPMPQLPNLEITEEFVFMVADAIRVWINTVLAVAREIYVGRNAKQLFRVS 123

Query:   163 AYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDE 222
               LW +S +G++ +F T+ Y+G +LS+ +P LY R++  +D    + H+ I   Y+ +DE
Sbjct:   124 VVLWTVSFVGNFLNFLTILYLGVVLSLLIPFLYERYQDLIDEKLSLTHRVIQTQYRKIDE 183

Query:   223 NVISRI 228
              ++ +I
Sbjct:   184 RLLQKI 189

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2089663 AT3G18260 "AT3G18260" [Arabidopsis thaliana (taxid:3702)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 56/201 (27%), Positives = 98/201 (48%)

Query:    36 KLLNRHGTVHQFMGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLL 95
             KL  R  ++H   GGG+ AD+LLW+  +++  +++  ++ W + E     F+++     +
Sbjct:    22 KLFTRQRSIHSIFGGGKVADILLWREPKIAATLVIGVSILWFLMEVVEYNFITLICHASM 81

Query:    96 LLIVLMXXXXXXXXXXXKQXXXXXXXXXXXXMVNNAAASFRVKINYLLLMAHDITVGKDF 155
               ++              +                 A SF V+ N +L    D+  G+D 
Sbjct:    82 TSMLFFFIWSTASDFLNWERPLIPEVVLDESSFKQLARSFHVRFNQILTKLLDVACGRDP 141

Query:   156 RLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQ 215
              LFF     L+++S IG+YF+F  L +IG +   T+P +Y  +E  VD   G + + + +
Sbjct:   142 PLFFLTTISLYIVSIIGTYFNFVNLLFIGFVSMQTLPVMYEMYEDDVDTAAGKLMRKMKK 201

Query:   216 HYKVVDENVISRIPRTLSKDK 236
              YK VD NV+S+IPR   K+K
Sbjct:   202 LYKKVDTNVLSKIPRGTVKNK 222

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2082772 AT3G61560 [Arabidopsis thaliana (taxid:3702)]

 Score = 130 (50.8 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
 Identities = 27/67 (40%), Positives = 40/67 (59%)

Query:    35 FKLLNRHGTVHQFMGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLS-VCSDV 93
             ++L  R   VH+ +GGG  ADV LW+ +++S  V+ VAT  W++FE     FLS VC  +
Sbjct:    50 YRLFGREKPVHKVLGGGLPADVFLWRDKKLSASVLGVATAIWVLFELVEYHFLSLVCHIL 109

Query:    94 LLLLIVL 100
             +  L  L
Sbjct:   110 IFALAAL 116

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2046783 RTNLB13 "AT2G23640" [Arabidopsis thaliana (taxid:3702)]

 Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
 Identities = 32/171 (18%), Positives = 76/171 (44%)

Query:    55 DVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMXXXXXXXXXXXKQ 114
             D+ LW+R++++F  ++V+T  W++    G   +++ S + + ++ ++           K 
Sbjct:    18 DIYLWRRKKLAFSTLLVSTSTWILLSFYGFTTITIVSWIGIAVVSMIFLWGSLLRLLSKV 77

Query:   115 XXXXXXXXXXXXMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSY 174
                          V     S R+ +  ++     +    ++ +F + V   W+LS IG+ 
Sbjct:    78 EPELSGLEVSEEFVVETVRSCRMLMEEMVRWMFRVGAESEWFVFARTVLGFWILSRIGNL 137

Query:   175 FSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVI 225
               F T  +IG ++ +TVP L+  +  ++ ++ G +       Y    E ++
Sbjct:   138 LDFHTCLFIGLVMGLTVPKLWEEYGDQIQKHLGSLKDKSKGAYNTTHEKIL 188

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0071458 "integral to cytosolic side of endoplasmic reticulum membrane" evidence=IDA

GO:0071782 "endoplasmic reticulum tubular network" evidence=IDA

GO:0071786 "endoplasmic reticulum tubular network organization" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8GYH6	RTNLP_ARATH	No assigned EC number	0.6299	0.9285	0.9778	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	238
pfam02453	164	pfam02453, Reticulon, Reticulon	1e-43

>gnl|CDD|217046 pfam02453, Reticulon, Reticulon

 Score =  144 bits (366), Expect = 1e-43
 Identities = 61/164 (37%), Positives = 84/164 (51%), Gaps = 1/164 (0%)

Query: 53  TADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANFAAFRN 112
            AD+LLW+  + S  V     V WL+F  SG   LSV S +LLLL+ + F         N
Sbjct: 1   VADLLLWRDPKKSGVVFGSLLVIWLLFSLSGYSLLSVLSYLLLLLLAVTFLWRLAKKLLN 60

Query: 113 KQLESL-PELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAI 171
              E L P++ +SEE V   A S RV IN  L     + +G+D     +    LWLLS +
Sbjct: 61  AVPEPLDPDVTLSEETVEEIADSLRVLINKALKELRRLFLGEDLVDSLKAAVGLWLLSYL 120

Query: 172 GSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQ 215
           GS FS  TL YIG +L+ TVP LY +++  +D Y       + +
Sbjct: 121 GSLFSGLTLLYIGVILAFTVPLLYEKYQDEIDAYVEKAKAKVKK 164

Reticulon, also know as neuroendocrine-specific protein (NSP), is a protein of unknown function which associates with the endoplasmic reticulum. This family represents the C-terminal domain of the three reticulon isoforms and their homologues. Length = 164

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	238
KOG1792	230	consensus Reticulon [Intracellular trafficking, se	100.0
PF02453	169	Reticulon: Reticulon; InterPro: IPR003388 Eukaryot	100.0
PF04842	683	DUF639: Plant protein of unknown function (DUF639)	97.23
KOG1792	230	consensus Reticulon [Intracellular trafficking, se	93.85
PF08372	156	PRT_C: Plant phosphoribosyltransferase C-terminal;	92.79
PF06398	359	Pex24p: Integral peroxisomal membrane peroxin; Int	92.37
PF08372	156	PRT_C: Plant phosphoribosyltransferase C-terminal;	87.42

>KOG1792 consensus Reticulon [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9.1e-53  Score=367.62  Aligned_cols=206  Identities=39%  Similarity=0.705  Sum_probs=200.3

Q ss_pred             ccCCCccCCCCCCccccccCCCcccceeecccccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 026435           30 AGAGGFKLLNRHGTVHQFMGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANFAA  109 (238)
Q Consensus        30 ~~~~~~~~~~r~~~v~~~lggg~vaDlLlWrd~~~S~~vf~~~t~~~~L~~~~~~sliSvv~~i~l~~l~~lFl~~~~~~  109 (238)
                      ..++.+|+|+|++|+|+++|||+++|+++|||++.||++|++++++|++|+..+|+.++++|+++++.+.+.|.|.+...
T Consensus        20 ~~~~~~rlf~~~~~v~~~lg~~~vaDlllWrdkk~s~~vl~~~~~~w~lf~~~~~~~vt~~~~i~ll~~~i~F~w~~~~~   99 (230)
T KOG1792|consen   20 AIEKSSRLFGREGPVHKVLGGGKVADLLLWRDKKKSGTVLGVATALWLLFEFFSYNSVTLLCHILLLALAILFLWSKAVT   99 (230)
T ss_pred             ccchhccccCCCccccccCCCCchhheeeeeccccceeehHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67889999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             Hhcc-CCC--CCC-ceeecHHHHHHHHHHHHHHHHHHHHHHchhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 026435          110 FRNK-QLE--SLP-ELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGT  185 (238)
Q Consensus       110 ~~~r-~~~--~~p-~~~isee~v~~~a~~v~~~iN~~l~~lr~l~~g~d~~~~lkv~~~L~~ls~vG~~~s~~tLl~ig~  185 (238)
                      +++| ++|  ..| ++++|||.+++.+..++.++|+.+.++|++++|+|+++++|++++||++|++|+|||++|++|+|+
T Consensus       100 ~~~k~~~~~~~lp~~i~ipee~~~~~a~~~~~~in~~l~~l~~ia~~~d~~~~lk~~v~lw~lS~vGs~fn~lTll~ig~  179 (230)
T KOG1792|consen  100 FLNKKSEPGAYLPVEITIPEEFVLALASSLRVEINQALSELRDIALGRDLKDFLKVAVGLWILSYVGSLFNFLTLLYIGL  179 (230)
T ss_pred             HHhcCCCccccCCceeecCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            8888 556  688 999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcc
Q 026435          186 LLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRIPRTLSKD  235 (238)
Q Consensus       186 v~~FTvP~lYe~yq~~ID~~v~~~~~~~~~~y~~~~~kv~~kip~~~~~~  235 (238)
                      +++||+|.+||+|||+||++++++.++.+++|+++|+|+++|||+++.++
T Consensus       180 v~~~TvP~~YEky~d~ID~~~~~~~~~~k~~~~~~~~k~l~kip~~~~~~  229 (230)
T KOG1792|consen  180 VLLFTVPVLYEKYEDQIDPYLGKVMEELKKHYRKFDEKVLSKIPAGPRKK  229 (230)
T ss_pred             HHHhcccchhHHhHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCccccC
Confidence            99999999999999999999999999999999999999999999988764

>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER)

Probab=100.00  E-value=2.1e-37  Score=256.12  Aligned_cols=163  Identities=31%  Similarity=0.515  Sum_probs=47.8

Q ss_pred             ccceeecccccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccCC------CCCCceeecHH
Q 026435           53 TADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANFAAFRNKQL------ESLPELEVSEE  126 (238)
Q Consensus        53 vaDlLlWrd~~~S~~vf~~~t~~~~L~~~~~~sliSvv~~i~l~~l~~lFl~~~~~~~~~r~~------~~~p~~~isee  126 (238)
                      |+|+|+||||+.||.+|++++++|++++++++|++|++|+++++.+++.+++......+++.+      ++.++.+++||
T Consensus         1 V~dll~W~~~~~S~~v~~~~~~~~~l~~~~~~s~is~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (169)
T PF02453_consen    1 VADLLLWRDPKKSGIVFGAILLFWLLFWLFNYSLISLVSYILLLLLAISFLYRLLSKVLSRSPKGPFKEPLDYDLEISEE   80 (169)
T ss_dssp             ----------------------------------------------------THCCCTCCHHHHCTTHHHHCHHHHHCCH
T ss_pred             CceeeEecCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCccCCccccccccHH
Confidence            689999999999999999999999999999999999999999999999998888777777654      33447899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHchhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHhhchhHHHHHH
Q 026435          127 MVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYC  206 (238)
Q Consensus       127 ~v~~~a~~v~~~iN~~l~~lr~l~~g~d~~~~lkv~~~L~~ls~vG~~~s~~tLl~ig~v~~FTvP~lYe~yq~~ID~~v  206 (238)
                      .++++++.+.+.+|..++.+|+++.++|+..+++++++||+++++|+++|++||++++++++||+|.+||+||++||+++
T Consensus        81 ~~~~~~~~~~~~~n~~~~~~~~l~~~~~~~~~l~~~~~l~~l~~lg~~~s~~~L~~l~~~~~f~~P~ly~~~~~~Id~~~  160 (169)
T PF02453_consen   81 RVERLADSVAEWINSVLSWLRRLVFGEDPKKSLKVFVVLYILSFLGSWFSFLTLLYLGVLGAFTVPKLYEKYQEEIDQYV  160 (169)
T ss_dssp             HHHHHHHHCCCCCCHHHHHHHCCCHCT-TTGGG-----------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 026435          207 GMIHKSISQ  215 (238)
Q Consensus       207 ~~~~~~~~~  215 (238)
                      +++++++||
T Consensus       161 ~~~~~~~~k  169 (169)
T PF02453_consen  161 AKVKEKVKK  169 (169)
T ss_dssp             ---------
T ss_pred             HHHHHHhcC
Confidence            999998875

Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.

>PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function

Probab=97.23  E-value=0.0042  Score=62.11  Aligned_cols=162  Identities=13%  Similarity=0.135  Sum_probs=102.5

Q ss_pred             cccceeecccccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcc---------CCCCCC-ce
Q 026435           52 RTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANFAAFRNK---------QLESLP-EL  121 (238)
Q Consensus        52 ~vaDlLlWrd~~~S~~vf~~~t~~~~L~~~~~~sliSvv~~i~l~~l~~lFl~~~~~~~~~r---------~~~~~p-~~  121 (238)
                      .+-++..|+||.+|...++....  .++    ...+.-+.-..++.+++..+|....+..++         +|+++. +-
T Consensus       505 ~~~~l~~We~P~kt~~Fl~~~~~--iI~----r~wl~Y~~p~~Ll~~a~~Ml~~r~~~~~g~~~~~v~V~~pP~~nTvEq  578 (683)
T PF04842_consen  505 WLQKLASWEEPLKTLVFLALFLY--IIY----RGWLGYIFPAFLLFSAVFMLWLRYQGRLGKSFGEVTVRDPPPKNTVEQ  578 (683)
T ss_pred             HHHHHhhccCcchhHHHHHHHHH--HHH----HHHHHHHHHHHHHHHHHHHHHHHhhhccCCccceEEecCCCCccHHHH
Confidence            34588999999999555444333  222    111222222233333344466444322222         222221 22


Q ss_pred             eecHHHHHHHHHHHHHHHHHHHHHHchhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHhhchhH
Q 026435          122 EVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEAR  201 (238)
Q Consensus       122 ~isee~v~~~a~~v~~~iN~~l~~lr~l~~g~d~~~~lkv~~~L~~ls~vG~~~s~~tLl~ig~v~~FTvP~lYe~yq~~  201 (238)
                      .+.-.....-++......|=++-++|.|++...+..+-++++.|..++.+-.++.+--++.+.++-.||-..=+.+    
T Consensus       579 ilalQ~Ais~~E~~iQ~~NI~LLKiRsllls~~PqaT~~Va~~Ll~~A~~LavvP~kyil~~v~l~~FTre~~~Rr----  654 (683)
T PF04842_consen  579 ILALQEAISQLEEYIQAANIVLLKIRSLLLSKFPQATNKVALALLGLAAVLAVVPFKYILLFVFLEVFTRESPFRR----  654 (683)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCch----
Confidence            3444444455667777889999999999999999999999999999999999999999999999999986433211    


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q 026435          202 VDRYCGMIHKSISQHYKVVDENVISRIPRTLS  233 (238)
Q Consensus       202 ID~~v~~~~~~~~~~y~~~~~kv~~kip~~~~  233 (238)
                        .-.++..+++++.|        ..||-+|.
T Consensus       655 --~s~er~~RRlrEWW--------~sIPAaPV  676 (683)
T PF04842_consen  655 --ESSERFNRRLREWW--------DSIPAAPV  676 (683)
T ss_pred             --hhHHHHHHHHHHHH--------hhCCccce
Confidence              12345555566655        35777765

>KOG1792 consensus Reticulon [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.85  E-value=0.26  Score=43.71  Aligned_cols=79  Identities=15%  Similarity=0.147  Sum_probs=66.7

Q ss_pred             HHchhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHhhc-----------------------hhH
Q 026435          145 MAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRF-----------------------EAR  201 (238)
Q Consensus       145 ~lr~l~~g~d~~~~lkv~~~L~~ls~vG~~~s~~tLl~ig~v~~FTvP~lYe~y-----------------------q~~  201 (238)
                      ...++++|||.+.++.++++..++-.+-.+++..++...+.+++++++.+|.++                       |+.
T Consensus        42 ~vaDlllWrdkk~s~~vl~~~~~~w~lf~~~~~~~vt~~~~i~ll~~~i~F~w~~~~~~~~k~~~~~~~lp~~i~ipee~  121 (230)
T KOG1792|consen   42 KVADLLLWRDKKKSGTVLGVATALWLLFEFFSYNSVTLLCHILLLALAILFLWSKAVTFLNKKSEPGAYLPVEITIPEEF  121 (230)
T ss_pred             chhheeeeeccccceeehHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCceeecCHHH
Confidence            578999999999999999999988888888898888888888888888777665                       567


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 026435          202 VDRYCGMIHKSISQHYKVVDEN  223 (238)
Q Consensus       202 ID~~v~~~~~~~~~~y~~~~~k  223 (238)
                      ++++...+..++|....++++-
T Consensus       122 ~~~~a~~~~~~in~~l~~l~~i  143 (230)
T KOG1792|consen  122 VLALASSLRVEINQALSELRDI  143 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            7788888888888887777654

>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins

Probab=92.79  E-value=0.83  Score=38.20  Aligned_cols=66  Identities=12%  Similarity=0.077  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHHHchhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHhhc
Q 026435          133 ASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRF  198 (238)
Q Consensus       133 ~~v~~~iN~~l~~lr~l~~g~d~~~~lkv~~~L~~ls~vG~~~s~~tLl~ig~v~~FTvP~lYe~y  198 (238)
                      +.+...+....+.++.++.++|+..|..+++++++++++-.+..+..++++..+-.++=|++=..+
T Consensus        72 Q~vlgd~At~gERl~allsWrdP~aT~lf~~~clv~avvly~vP~r~l~l~~gly~~r~P~~R~~~  137 (156)
T PF08372_consen   72 QNVLGDVATQGERLQALLSWRDPRATALFVVFCLVAAVVLYFVPFRVLVLIWGLYKLRHPRFRNPL  137 (156)
T ss_pred             HHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCccccCCC
Confidence            334445566678999999999999999999999999988888888888888888888888776543

It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).

>PF06398 Pex24p: Integral peroxisomal membrane peroxin; InterPro: IPR010482 Peroxisomes play diverse roles in the cell, compartmentalising many activities related to lipid metabolism and functioning in the decomposition of toxic hydrogen peroxide

Probab=92.37  E-value=1.6  Score=40.51  Aligned_cols=22  Identities=18%  Similarity=0.486  Sum_probs=16.2

Q ss_pred             cccceeecccccchhHHHHHHH
Q 026435           52 RTADVLLWKRRRVSFGVIVVAT   73 (238)
Q Consensus        52 ~vaDlLlWrd~~~S~~vf~~~t   73 (238)
                      .+.++++|+|+..+-..+...+
T Consensus        31 ~vl~il~W~~p~~t~~~L~l~t   52 (359)
T PF06398_consen   31 RVLRILTWTNPDYTLSFLLLYT   52 (359)
T ss_pred             HHHHeEEeCCCCcchHHHHHHH
Confidence            4588999999998855544444

Sequence similarity was identified between two hypothetical proteins and the peroxin integral membrane protein Pex24p [].

>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins

Probab=87.42  E-value=0.081  Score=44.22  Aligned_cols=63  Identities=22%  Similarity=0.329  Sum_probs=43.1

Q ss_pred             cccccCCCcccccccccCCccccCCCccCCCCCCccccccC-----CCcccceeecccccchhHHHHHHHH
Q 026435            9 DIVDRDGDAAATSSSTTSAPAAGAGGFKLLNRHGTVHQFMG-----GGRTADVLLWKRRRVSFGVIVVATV   74 (238)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~lg-----gg~vaDlLlWrd~~~S~~vf~~~t~   74 (238)
                      |..|.+-|--.|   +-++.+...+..|+..--..+..++|     |.++..++.||||..|+....+..+
T Consensus        39 deldEEfD~~ps---~~~~~~lr~Rydrlr~va~rvQ~vlgd~At~gERl~allsWrdP~aT~lf~~~clv  106 (156)
T PF08372_consen   39 DELDEEFDTFPS---SRPPDSLRMRYDRLRSVAGRVQNVLGDVATQGERLQALLSWRDPRATALFVVFCLV  106 (156)
T ss_pred             chhhhhhccccc---ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHH
Confidence            444554454443   33555666676777766667777787     6799999999999999776554443

It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	238
2ko2_A	79	Reticulon-4; NOGO, membrane protein, peripheral, D	98.3
2g31_A	60	Reticulon-4; NOGO, helix, signaling protein; NMR {	97.66

>2ko2_A Reticulon-4; NOGO, membrane protein, peripheral, DPC micelle, myelin INHI endoplasmic reticulum, membrane, phosphoprotein, transmembr; NMR {Mus musculus}

Probab=98.30  E-value=8e-08  Score=70.23  Aligned_cols=60  Identities=18%  Similarity=0.131  Sum_probs=55.5

Q ss_pred             HH-HHHHHHHHhccCCCCCC-------ceeecHHHHHHHHHHHHHHHHHHHHHHchhhcccchHHHHH
Q 026435          101 MF-FRANFAAFRNKQLESLP-------ELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQ  160 (238)
Q Consensus       101 lF-l~~~~~~~~~r~~~~~p-------~~~isee~v~~~a~~v~~~iN~~l~~lr~l~~g~d~~~~lk  160 (238)
                      .| +|..+.+.++|+...+|       |+.+|+|++++.++.+...+|.++.++|++|++||+.+|+|
T Consensus        12 sfRiYk~vlqavqKtd~~hPFk~YLd~Di~ls~E~~~~~~~~~v~~in~~l~~LRrLfLVedlvDSLK   79 (79)
T 2ko2_A           12 GMRIYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNSTIKELRRLFLVDDLVDSLK   79 (79)
T ss_dssp             -CTHHHHTHHHHHCTTTTCCSHHHHHHHHHHTTCHHHHHHHCTTTHHHHHHHHHHHHHHHTCTTGGGC
T ss_pred             HHHHHHHHHHHHHhCCCCCCccccccccccCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcccHHHhcC
Confidence            44 88999999999998899       88999999999999999999999999999999999998875

>2g31_A Reticulon-4; NOGO, helix, signaling protein; NMR {Homo sapiens} PDB: 2jv5_A

Probab=97.66  E-value=8.6e-07  Score=61.58  Aligned_cols=50  Identities=22%  Similarity=0.206  Sum_probs=43.2

Q ss_pred             HHHHHHhccCCCCCC-------ceeecHHHHHHHHHHHHHHHHHHHHHHchhhcccc
Q 026435          105 ANFAAFRNKQLESLP-------ELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKD  154 (238)
Q Consensus       105 ~~~~~~~~r~~~~~p-------~~~isee~v~~~a~~v~~~iN~~l~~lr~l~~g~d  154 (238)
                      ..+.+.++++...+|       |+.+|+|.+++.++.+..++|.++..+|++|++||
T Consensus         4 k~vlqavqKt~~~hPFk~yLd~di~ls~e~~~~~~~~~v~~in~~l~~lrrLfLVed   60 (60)
T 2g31_A            4 KGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDD   60 (60)
T ss_dssp             CTTTTHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHGGGTCHHHHHHHHTSSCTTC
T ss_pred             HHHHHHHHhCCCCCCchhccccCcCCCHHHHHHHHHHHHHHHHHHHHHHhHhhccCC
Confidence            334455667666777       88999999999999999999999999999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00