Citrus Sinensis ID: 026455

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------24
Protein Sequence
MTSSENLPSVDAWSFRAAFADSWLSEAYARDTETLTKALQKTFSNNNNNNNNSNDITYSVTETLACDFTPPFVAPETPTVSNVSGSDPETLPKRQRTAAVGGPNSGKITKRKARASKKTQTTFITADPANFRQMVQQVTGVRFGSAQVAMAPVLKPEPQRPGGRLHGIGGGSLPTLDTSAFLLDHHQQLGQAPGAGVGSVLGSGHFDFQTSLVCDGASTGLEFDALSNFPTLESWKVM
Secondary Structure (PSIPRED)
cccccccccccccccccccHHHHHHHHHHccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccEEEEcccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHcccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccEEEEccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mtssenlpsvdawSFRAAFADSWLSEAYARDTETLTKALQKTFSnnnnnnnnsndiTYSVTEtlacdftppfvapetptvsnvsgsdpetlpkrqrtaavggpnsgkitKRKARASKktqttfitadpaNFRQMVQQVTGVRFGSaqvamapvlkpepqrpggrlhgigggslptldtSAFLLDHHQqlgqapgagvgsvlgsghfdfqtslvcdgastglefdalsnfptleswkvm
Flexible Loop (DISEMBL)
mtssenlpsvdAWSFRAAFADSWLSEAYARDTETLTKALQKTfsnnnnnnnnsNDITYSVTETLACDFTPPFVAPETPtvsnvsgsdpetlpkrqrtaavggpnsgkitkrkaraskktqttfitadpanfRQMVQQVTGVRFGSAQVAMAPVLKPEPQRPGGRLHGIGGGSLPTLDTSAFLLDHHQQLGQAPGAGVGSVLGSGHFDFQTSLVCDGASTGLEfdalsnfptleswkvm
Low Complexity Region (SEG)
MTSSENLPSVDAWSFRAAFADSWLSEAYARDTETLTKALQKTFsnnnnnnnnsnDITYSVTETLACDFTPPFVAPETPTVSNVSGSDPETLPKRQRTAAVGGPNSGKITKRKARASKKTQTTFITADPANFRQMVQQVTGVRFGSAQVAMAPVLKPEPQRPggrlhgigggSLPTLDTSAFLLDHHQQLGQAPGAGVGSVLGSGHFDFQTSLVCDGASTGLEFDALSNFPTLESWKVM
Disordered region (IsUnstruct)
**********DAWSFRAAFADSWLSEAYAR**************************TYSVTETLACDFTPPFV*************************************************FITADPANFRQMVQQVTGVRFGSAQVAM*****************IGGGSLPTLDTSAFLLDHHQQLGQAPGAGVGSVLGSGHFDFQTSLVCDGASTGLEFDALSNFPTL******
Disordered Region (DISOPRED)
*********VDAWSFRAAFADSWLSEAYARDTETLTKALQ**********************************************************************************FITADPANFRQMVQQVTGVRF**************************GGSLPTLDTSAFLLD***************************************DALSNFPTLESWKVM
Disordered Region (DISEMBL)
********SVDAWSFRAAFADSWLSEAYARDTETLTKALQKTFSNNNNNNNNSNDITYSVTETLACDFTPPFVAPET******************************************QTTFITADPANFRQMVQQVTGVRFGSAQVAMAPVLKPEPQRPGGRLHGIGGGSLPTLDTSAFLLDHHQQLGQAPGAGVGSVLGSGHFDFQTSLVCDGASTGLEFDALSNFPTLESWKVM
Disordered Region (DISPRO)
********SVDAWSFRAAFADSWLSEAYARDTETLTKALQKTFS***************************************************************************QTTFITADPANFRQMVQQVTGVRFGSAQVAMAPVLKPEPQRPGGRLHGIGGGSLPTLDTSAFLLDHHQ************************************DALSNFPTLESWK**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTSSENLPSVDAWSFRAAFADSWLSEAYARDTETLTKALQKTFSNNNNNNNNSNDITYSVTETLACDFTPPFVAPETPTVSNVSGSDPETLPKRQRTAAVGGPNSGKITKRKARASKKTQTTFITADPANFRQMVQQVTGVRFGSAQVAMAPVLKPEPQRPGGRLHGIGGGSLPTLDTSAFLLDHHQQLGQAPGAGVGSVLGSGHFDFQTSLVCDGASTGLEFDALSNFPTLESWKVM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	238
147789492	219	hypothetical protein VITISV_034276 [Viti	0.890	0.968	0.583	5e-66
225440213	219	PREDICTED: uncharacterized protein LOC10	0.890	0.968	0.583	6e-66
224137606	255	predicted protein [Populus trichocarpa]	0.987	0.921	0.554	4e-59
224086753	260	predicted protein [Populus trichocarpa]	0.987	0.903	0.558	2e-56
255560030	250	conserved hypothetical protein [Ricinus	0.907	0.864	0.5	7e-54
356571872	232	PREDICTED: uncharacterized protein LOC10	0.928	0.952	0.518	1e-48
356503344	229	PREDICTED: uncharacterized protein LOC10	0.806	0.838	0.524	1e-43
449437978	240	PREDICTED: uncharacterized protein LOC10	0.941	0.933	0.446	5e-42
15230149	245	VQ motif-containing protein [Arabidopsis	0.928	0.902	0.458	2e-40
297817002	242	VQ motif-containing protein [Arabidopsis	0.957	0.942	0.456	3e-40

>gi|147789492|emb|CAN76136.1| hypothetical protein VITISV_034276 [Vitis vinifera]

 Score =  256 bits (654), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 143/245 (58%), Positives = 167/245 (68%), Gaps = 33/245 (13%)

Query: 1   MTSSENLPSVDAWSFRAAFADSWLSEAYARDTETLTKALQKTFSNNNNNNNNSNDITYSV 60
           M SS+NL SVD W FR  FADSW+SEA+ARDTETLTKALQK+ SN+ +N           
Sbjct: 1   MASSDNLASVDPWVFRHTFADSWISEAFARDTETLTKALQKSISNHPDN----------- 49

Query: 61  TETLACDFTPPFV----APET---PTVSNVSGSDPETLPKRQRTAAVGGPNSGKITKRKA 113
              +ACD   PF+     PET   P+VS VSGSD ET PKR+   A+ G   GKITKRK+
Sbjct: 50  ---VACDTISPFLNDLLKPETAQTPSVSGVSGSDHETAPKRR--TAIPGAAGGKITKRKS 104

Query: 114 RASKKTQTTFITADPANFRQMVQQVTGVRFGSAQVAMAPVLKPEPQRPGGRLHGIGGGSL 173
           RASK++QTTFITADPANFRQMVQQVTGVRFG++Q+ + P+LKPEP+RPG RL G     L
Sbjct: 105 RASKRSQTTFITADPANFRQMVQQVTGVRFGNSQLPVNPILKPEPKRPGNRLLGC----L 160

Query: 174 PTLDTSAFLLDHHQQLGQAPGAGVGSVLGSGHFDFQTSLVCDGASTGLEFDALSNFPTLE 233
           PTLDTS FLLDHH Q    P          G   FQ  +V DG +TGLEF+   +FPTLE
Sbjct: 161 PTLDTSEFLLDHHHQQVMGPATAT-----QGAMTFQ-PVVADGGATGLEFETFPSFPTLE 214

Query: 234 SWKVM 238
           SWKVM
Sbjct: 215 SWKVM 219

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440213|ref|XP_002283659.1| PREDICTED: uncharacterized protein LOC100255095 [Vitis vinifera]

 Score =  256 bits (653), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 143/245 (58%), Positives = 167/245 (68%), Gaps = 33/245 (13%)

Query: 1   MTSSENLPSVDAWSFRAAFADSWLSEAYARDTETLTKALQKTFSNNNNNNNNSNDITYSV 60
           M SS+NL SVD W FR  FADSW+SEA+ARDTETLTKALQK+ SN+ +N           
Sbjct: 1   MASSDNLASVDPWVFRHTFADSWISEAFARDTETLTKALQKSISNHPDN----------- 49

Query: 61  TETLACDFTPPFV----APET---PTVSNVSGSDPETLPKRQRTAAVGGPNSGKITKRKA 113
              +ACD   PF+     PET   P+VS VSGSD ET PKR+   A+ G   GKITKRK+
Sbjct: 50  ---VACDTISPFLNDLLKPETAQTPSVSGVSGSDHETAPKRR--TAIPGAVGGKITKRKS 104

Query: 114 RASKKTQTTFITADPANFRQMVQQVTGVRFGSAQVAMAPVLKPEPQRPGGRLHGIGGGSL 173
           RASK++QTTFITADPANFRQMVQQVTGVRFG++Q+ + P+LKPEP+RPG RL G     L
Sbjct: 105 RASKRSQTTFITADPANFRQMVQQVTGVRFGNSQLPVNPILKPEPKRPGNRLLGC----L 160

Query: 174 PTLDTSAFLLDHHQQLGQAPGAGVGSVLGSGHFDFQTSLVCDGASTGLEFDALSNFPTLE 233
           PTLDTS FLLDHH Q    P          G   FQ  +V DG +TGLEF+   +FPTLE
Sbjct: 161 PTLDTSEFLLDHHHQQVMGPATAT-----QGAMTFQ-PVVADGGATGLEFETFPSFPTLE 214

Query: 234 SWKVM 238
           SWKVM
Sbjct: 215 SWKVM 219

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137606|ref|XP_002322599.1| predicted protein [Populus trichocarpa] gi|222867229|gb|EEF04360.1| predicted protein [Populus trichocarpa]

 Score =  233 bits (595), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 143/258 (55%), Positives = 179/258 (69%), Gaps = 23/258 (8%)

Query: 1   MTSSENLPSVDAWS--FRAAFADSWLSEAYARDTETLTKALQKTFSNNNNNNN------- 51
           M SSENL S++ W+  FR + +D W+SEAYARDTETLTKALQK+  NN ++ +       
Sbjct: 1   MASSENLASLEPWNMMFRPSLSDCWISEAYARDTETLTKALQKSLFNNIDDIDIPINTNT 60

Query: 52  -NSNDITYSVTETLACDFTPPFV-----APETPTVSNVSGSDPET--LPKRQRTAAVGGP 103
            +++  ++S+TET + +   PF      AP TPT SNVSGSDPET  + KR R    G  
Sbjct: 61  NDNSSNSFSITETFSSNSINPFTGLIETAPPTPTPSNVSGSDPETAGVTKRHRNPVPGA- 119

Query: 104 NSGKITKRKARASKKTQTTFITADPANFRQMVQQVTGVRFGSAQVAMAPVLKPEPQRPGG 163
            +GK++KRK+RASK++QTTFITADPANFRQMVQQVTGVRF ++QV+M PVLKPEPQR GG
Sbjct: 120 -TGKVSKRKSRASKRSQTTFITADPANFRQMVQQVTGVRFNNSQVSMVPVLKPEPQRLGG 178

Query: 164 RLHGIGGGSLPTLDTSAFLLDHH-QQLGQAPGAGVGSVLGSGHFDFQTSL--VCDGASTG 220
           R  G G G LPTLDTSAFLLDHH QQ+     +G     G   F  Q  +  V  G+S G
Sbjct: 179 RFQG-GSGCLPTLDTSAFLLDHHQQQVVMGSASGSSPGSGPVSFTQQPMMGDVGVGSSGG 237

Query: 221 LEFDALSNFPTLESWKVM 238
           ++FD  S+FPTLESWKV+
Sbjct: 238 IDFDTFSSFPTLESWKVV 255

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224086753|ref|XP_002307950.1| predicted protein [Populus trichocarpa] gi|222853926|gb|EEE91473.1| predicted protein [Populus trichocarpa]

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 147/263 (55%), Positives = 177/263 (67%), Gaps = 28/263 (10%)

Query: 1   MTSSENLPSVDAWS--FRAAFADSWLSEAYARDTETLTKALQKTFSNN------NNNNNN 52
           M SSENL S++ W+  FR  F D WL EAYARDTETLTKALQK+  NN      + N ++
Sbjct: 1   MASSENLASLEPWNMMFRPNFPDFWLPEAYARDTETLTKALQKSLFNNIDDTPTDTNTDD 60

Query: 53  SNDITYSVTETLACDFTPPFV-----APETPTVSNVSGSDPETL--PKRQRTAAVGGPNS 105
           ++  ++S+ ET + +   PF      AP TPT SNVSGSDPET    KRQR    G   +
Sbjct: 61  NSTNSFSMNETFSSNSFNPFTSLIETAPPTPTASNVSGSDPETAGATKRQRNLVPGA--T 118

Query: 106 GKITKRKARASKKTQTTFITADPANFRQMVQQVTGVRFGSAQVAMAPVLKPEPQRPGGRL 165
           GK++KRK RASK++QTTFITADPANFRQMVQQVTGVRFG++QV+M PVLKPEPQRPGGRL
Sbjct: 119 GKVSKRKTRASKRSQTTFITADPANFRQMVQQVTGVRFGNSQVSMVPVLKPEPQRPGGRL 178

Query: 166 HGIGGGSLPTLDTSAFLLDHHQQLGQAPGAGVGSV-------LGSGHFDFQTSLVCD--- 215
             +G G LPTLDTSAFLLDHHQQ  Q       +         G G   F   +V D   
Sbjct: 179 L-VGSGYLPTLDTSAFLLDHHQQQLQHHVVTGSTSGSSTGPDFGPGPNLFTQPMVGDVGV 237

Query: 216 GASTGLEFDALSNFPTLESWKVM 238
            +S+GL+F   S+FPTLESWKV+
Sbjct: 238 HSSSGLDFGTFSSFPTLESWKVV 260

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560030|ref|XP_002521033.1| conserved hypothetical protein [Ricinus communis] gi|223539736|gb|EEF41317.1| conserved hypothetical protein [Ricinus communis]

 Score =  216 bits (550), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 136/272 (50%), Positives = 162/272 (59%), Gaps = 56/272 (20%)

Query: 1   MTSSENLPSVDAWSFRAAFADSWLSEAYARDTETLTKALQKT------------------ 42
           M SSENL S + + FR  F DSW+SEAYARDT+ LTKALQK+                  
Sbjct: 1   MASSENLASFEPFFFRHTFPDSWISEAYARDTDALTKALQKSLSNNNNNNNNSLLEVLTS 60

Query: 43  ------FSNNNNNNNNSNDITYSVTETLACDFTPPFVAPETPTVSNVSGSDPETL----P 92
                 F N +N+ +N++ IT                   TPT SNVSGS+PET     P
Sbjct: 61  DSLINPFLNLSNSESNASPIT-------------------TPTASNVSGSEPETPSAPPP 101

Query: 93  KRQRTAAVGGPNSGKITKRKARASKKTQTTFITADPANFRQMVQQVTGVRFGSAQVAMAP 152
           KRQR        +GK +KRK+RASK++QTTFI+ADPANFRQMVQQVTGVR  ++Q  + P
Sbjct: 102 KRQRNGIPAA--TGKFSKRKSRASKRSQTTFISADPANFRQMVQQVTGVRLDNSQFPVVP 159

Query: 153 VLKPEPQRPGGRLHGIGGGSLPTLDTSAFLLDHHQQLGQAPGAG-----VGSVLGSGHFD 207
           VLKPEPQRPG RL G  GG LPTLDTSAFLLDHH    Q    G      G ++G     
Sbjct: 160 VLKPEPQRPGSRLRGAPGG-LPTLDTSAFLLDHHHHQQQQQMVGGATSSSGPIVGRDPVS 218

Query: 208 FQTSLVCDGA-STGLEFDALSNFPTLESWKVM 238
           F  +++ DG  S GLEFD  S+FPTLES KVM
Sbjct: 219 FSQAVLADGGPSAGLEFDTFSSFPTLESGKVM 250

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356571872|ref|XP_003554095.1| PREDICTED: uncharacterized protein LOC100790912 [Glycine max]

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 129/249 (51%), Positives = 156/249 (62%), Gaps = 28/249 (11%)

Query: 1   MTSSENLPSVDAWSFRAAFADSWLSEAYARDTETLTKALQKTFSNNNNNNNNSNDITYSV 60
           M SS+N+ S++ W  R    DSWL+E +ARD +TLT+ALQK+ S      +N        
Sbjct: 1   MASSQNVASIEPWMLRPPVTDSWLAEFFARDADTLTRALQKSLSGAVLPQDNH------- 53

Query: 61  TETLACDFTPPFVAPETPTVSNVSGSDPETLPKRQRTAAVGGPNSGKITKRKARASKKTQ 120
              L+     P  A  TPTVS++SGSD E+ P+R+         SGKI+KRK+RASK++Q
Sbjct: 54  ---LSPFLHQPAAAAATPTVSSLSGSDQESAPRRRAAPP----PSGKISKRKSRASKRSQ 106

Query: 121 TTFITADPANFRQMVQQVTGVRFGSAQVAMAPVLKPEPQRPGGRLHGIGG-GSLPTLDTS 179
           TTFITADPANFRQMVQQVTGVRFG A +A A V+KPEPQR  G      G G LPTLDTS
Sbjct: 107 TTFITADPANFRQMVQQVTGVRFGGAPIAPAAVVKPEPQRASGLARFPAGVGCLPTLDTS 166

Query: 180 AFLLDHHQQ------LGQAPGAGVGSVLGSGHFDFQTSLV----CDGASTGLEFDALSNF 229
           AFLLDHHQQ      +   PG G+    G G   F   L+       AS+GL+FD  SNF
Sbjct: 167 AFLLDHHQQQVVPASVNSGPGTGLS---GPGPLPFAQPLLDAHAASFASSGLDFDTFSNF 223

Query: 230 PTLESWKVM 238
           PTLESWKVM
Sbjct: 224 PTLESWKVM 232

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356503344|ref|XP_003520470.1| PREDICTED: uncharacterized protein LOC100782392 [Glycine max]

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 118/225 (52%), Positives = 138/225 (61%), Gaps = 33/225 (14%)

Query: 28  YARDTETLTKALQKTFSNNNNNNNNSNDITYSVTETLACDFTP---PFVAPETPTVSNVS 84
           +ARD + LTKALQK+ S     +           E     F P   P VA  TPTVS++S
Sbjct: 24  FARDADALTKALQKSLSGTVLPDE----------ENYFSPFLPKSDPAVA--TPTVSSLS 71

Query: 85  GSDPETLPKRQRTAAVGGPNSGKITKRKARASKKTQTTFITADPANFRQMVQQVTGVRFG 144
           GSD ++ P+R+       P SGKI+KRK+RASK++QTTFITADPANFRQMVQQVTGVRFG
Sbjct: 72  GSDQDSAPRRRAPL----PPSGKISKRKSRASKRSQTTFITADPANFRQMVQQVTGVRFG 127

Query: 145 SAQVAMAP---VLKPEPQRPGGRLH-GIGGGSLPTLDTSAFLLDHHQQ------LGQAPG 194
            A   +AP   V+KPEPQR  G      G G LPTLDTSAFLLDHHQQ      +   P 
Sbjct: 128 GAGQPIAPAAGVVKPEPQRASGLARFPAGAGCLPTLDTSAFLLDHHQQVVGPSSVNSGPA 187

Query: 195 AGVGSVLGSGHFDF-QTSLVCDGASTGLEFDALSNFPTLESWKVM 238
            G+    G G   F Q  L    AS GL+FD  S+FPTLESWKVM
Sbjct: 188 TGLS---GPGPLPFAQPLLDASFASAGLDFDTFSSFPTLESWKVM 229

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437978|ref|XP_004136767.1| PREDICTED: uncharacterized protein LOC101211486 [Cucumis sativus] gi|449525975|ref|XP_004169991.1| PREDICTED: uncharacterized LOC101211486 [Cucumis sativus]

 Score =  176 bits (447), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 113/253 (44%), Positives = 149/253 (58%), Gaps = 29/253 (11%)

Query: 1   MTSSENLPS-VDAWSFRAAFADSWLSEAYARDTETLTKALQKTFSNNNNNNNNSNDITYS 59
           M SS+N PS ++ WSFR+ F D WLS+ ++R+T++LT+ALQ +   +++  ++S      
Sbjct: 1   MASSDNFPSFLNTWSFRSTFQDPWLSDPFSRETQSLTRALQSSLLPSSDTPHSS------ 54

Query: 60  VTETLACDFTPPFVAPETPTVSNVS-GSDPE-------TLPKRQRTAAVGGPNSGKITKR 111
                  D   P     TPTVS +S G+ PE          KR R+     P  GK++KR
Sbjct: 55  -----FLDLISPDSNDPTPTVSGISAGAAPELDTPPPPPSSKRHRSTI--PPTGGKVSKR 107

Query: 112 KARASKKTQTTFITADPANFRQMVQQVTGVRFGSAQVAMAPVLKPEPQRPGGRLHGIGGG 171
           K+RASK   TTFITADPANFRQMVQQVTGVRFG++Q+ + P+LKPEPQR   R    GG 
Sbjct: 108 KSRASKN-HTTFITADPANFRQMVQQVTGVRFGNSQIQIPPILKPEPQRVSARFSVCGGD 166

Query: 172 SLPTLDTSAFLLD---HHQQLGQAPGAGVGSVLGSGHFDFQTSL---VCDGASTGLEFDA 225
            LPTLDTSAFLL+   H QQ  Q        +   G   F + L   + +    G +FD 
Sbjct: 167 GLPTLDTSAFLLNNTHHQQQQQQQSSGSGSEITQPGPVSFGSELELELPNHGPIGSDFDT 226

Query: 226 LSNFPTLESWKVM 238
            S+FPTLESWK +
Sbjct: 227 FSSFPTLESWKAV 239

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15230149|ref|NP_191247.1| VQ motif-containing protein [Arabidopsis thaliana] gi|9663007|emb|CAC00751.1| putative protein [Arabidopsis thaliana] gi|15028355|gb|AAK76654.1| unknown protein [Arabidopsis thaliana] gi|24030447|gb|AAN41377.1| unknown protein [Arabidopsis thaliana] gi|332646060|gb|AEE79581.1| VQ motif-containing protein [Arabidopsis thaliana]

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 120/262 (45%), Positives = 156/262 (59%), Gaps = 41/262 (15%)

Query: 1   MTSSENLPSVDAWSFRAAF-ADSWL-SEAYARDTETLTKALQKTFSNNNNNNNNSNDITY 58
           M SSE L SVD WSFR  F  DSWL S++++ D++ L KAL ++ S +  ++  S    +
Sbjct: 1   MASSEGLASVDPWSFRQNFNIDSWLLSDSFSHDSDILAKALHRSISTSTESSPLSPSSFF 60

Query: 59  SVTETLACDFTPPFVAPETPTVSNVS-GSDPET-------LPKRQRTAAVGGPNSGKITK 110
             + T A DF+PP       T+SNVS GSDPE        L KR+R   V G   GK TK
Sbjct: 61  D-SSTAAVDFSPP------QTLSNVSFGSDPEIPAASALGLGKRKRGPGVSG---GKQTK 110

Query: 111 RKARAS-KKTQTTFITADPANFRQMVQQVTGVRF-GSAQVAMAPVLKPEPQRPGGRLHGI 168
           R++R S KK+QTTFITAD ANFRQMVQQVTG +F GS+    AP++KPEP R   RL   
Sbjct: 111 RRSRVSNKKSQTTFITADAANFRQMVQQVTGAKFLGSSNSIFAPIVKPEPHRLASRLPPS 170

Query: 169 GG-----GSLPTLDTSAFLLDHHQQLGQAPGAGVGSVLG--SGHFDFQ-----TSLVCDG 216
            G      ++PTLDTS+FL +HHQ+        + + LG  +G F  Q     T+    G
Sbjct: 171 CGNLDRSSAVPTLDTSSFLSNHHQE-------NIITDLGAPTGSFHHQSSAGTTTANVGG 223

Query: 217 ASTGLEFDALSNFPTLESWKVM 238
            S+ +E D+  +FPTLESWKVM
Sbjct: 224 GSSAVELDSYPSFPTLESWKVM 245

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297817002|ref|XP_002876384.1| VQ motif-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297322222|gb|EFH52643.1| VQ motif-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  171 bits (432), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 115/252 (45%), Positives = 149/252 (59%), Gaps = 24/252 (9%)

Query: 1   MTSSENLPSVDAWSFRAAF-ADSWL-SEAYARDTETLTKALQKTFSNNNNNNNNSNDITY 58
           M SSE L SVD WSFR  F  DSWL S++++ D++ L KAL ++ S +  ++  S    +
Sbjct: 1   MASSEGLASVDPWSFRQNFNIDSWLISDSFSHDSDLLAKALHRSISTSTESSPLSPSSFF 60

Query: 59  --SVTETLACDFTPPFVAPETPTVSNVS-GSDPETLPKRQRTAAVGGPNSGKITKRKARA 115
             S    L  D +P        T+SNVS GSDPE   KR+R   V G   GK TKR++R 
Sbjct: 61  DSSTAAVLVSDLSPQ-------TLSNVSFGSDPEIPAKRKRGPGVSG---GKPTKRRSRV 110

Query: 116 S-KKTQTTFITADPANFRQMVQQVTGVRF-GSAQVAMAPVLKPEPQRPGGRLHGIGG--- 170
           S KK+QTTFITAD ANFRQMVQQVTG +F GS+    AP++KPEP R   RL    G   
Sbjct: 111 SNKKSQTTFITADAANFRQMVQQVTGAKFLGSSNSIFAPIVKPEPHRLASRLPPSCGNLD 170

Query: 171 --GSLPTLDTSAFLLDHHQQLGQAPGAGVGSVLGSGHFDFQ--TSLVCDGASTGLEFDAL 226
              ++PTLDTS+FL +HHQ+        V + +GS H      T+    G  + +E D+ 
Sbjct: 171 RSSAVPTLDTSSFLSNHHQENIITDLGSVSAPIGSFHHQSSAATTTANVGGGSAVELDSY 230

Query: 227 SNFPTLESWKVM 238
            +FPTLESWKVM
Sbjct: 231 PSFPTLESWKVM 242

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	238
TAIR|locus:2103590	245	AT3G56880 "AT3G56880" [Arabido	0.953	0.926	0.453	2.8e-41
TAIR|locus:2063265	238	CAMBP25 "AT2G41010" [Arabidops	0.924	0.924	0.414	7.4e-34
TAIR|locus:2129700	193	AT4G15120 "AT4G15120" [Arabido	0.260	0.321	0.405	5.8e-05
TAIR|locus:2090389	192	AT3G22160 "AT3G22160" [Arabido	0.205	0.255	0.446	7.8e-05

TAIR|locus:2103590 AT3G56880 "AT3G56880" [Arabidopsis thaliana (taxid:3702)]

 Score = 438 (159.2 bits), Expect = 2.8e-41, P = 2.8e-41
 Identities = 116/256 (45%), Positives = 147/256 (57%)

Query:     1 MTSSENLPSVDAWSFRAAF-ADSWL-SEAYARDTETLTKALQKTFXXXXXXXXXXXDITY 58
             M SSE L SVD WSFR  F  DSWL S++++ D++ L KAL ++               +
Sbjct:     1 MASSEGLASVDPWSFRQNFNIDSWLLSDSFSHDSDILAKALHRSISTSTESSPLSPSSFF 60

Query:    59 SVTETLACDFTPPFVAPETPTVSNVS-GSDPET-------LPKRQRTAAVGGPNSGKITK 110
               + T A DF+PP       T+SNVS GSDPE        L KR+R   V G   GK TK
Sbjct:    61 D-SSTAAVDFSPP------QTLSNVSFGSDPEIPAASALGLGKRKRGPGVSG---GKQTK 110

Query:   111 RKARAS-KKTQTTFITADPANFRQMVQQVTGVRF-GSAQVAMAPVLKPEPQR-----PXX 163
             R++R S KK+QTTFITAD ANFRQMVQQVTG +F GS+    AP++KPEP R     P  
Sbjct:   111 RRSRVSNKKSQTTFITADAANFRQMVQQVTGAKFLGSSNSIFAPIVKPEPHRLASRLPPS 170

Query:   164 XXXXXXXXSLPTLDTSAFLLDHHQQ-LGQAPGAGVGSVLGSGHFDFQTSLVCDGASTGLE 222
                     ++PTLDTS+FL +HHQ+ +    GA  GS          T+ V  G S+ +E
Sbjct:   171 CGNLDRSSAVPTLDTSSFLSNHHQENIITDLGAPTGSFHHQSSAGTTTANV-GGGSSAVE 229

Query:   223 FDALSNFPTLESWKVM 238
              D+  +FPTLESWKVM
Sbjct:   230 LDSYPSFPTLESWKVM 245

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2063265 CAMBP25 "AT2G41010" [Arabidopsis thaliana (taxid:3702)]

 Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
 Identities = 106/256 (41%), Positives = 140/256 (54%)

Query:     1 MTSSENLPSVDAWSFRAAF-ADSWL-SEAYARDTETLTKALQKTFXXXXXXXXXXXDITY 58
             M +SE L SVD+W +R  F  DSWL S+ ++ D + L +AL  T               +
Sbjct:     1 MVTSEGLASVDSWLYRQGFNVDSWLLSDTFSHDNDLLARALHTTVTA-----------PH 49

Query:    59 SVTETLACDFTPPFVAPE-TPTVSN-VSG-SDPETL---PKRQRTAAVGGPNSGKITKRK 112
             ++T + A   +     P  T T+S+ VSG SDPE +    KR+R   +     GK  KR+
Sbjct:    50 TLTPSSAFFDSSAVSHPSSTNTLSSTVSGASDPEIIGGGAKRKRNCLL---TDGKAAKRR 106

Query:   113 ARASKKTQTTFITADPANFRQMVQQVTGVRF---GSAQVAMAPVLKPEPQR---PXXXXX 166
             ARASKK+QTTFITADP+NFRQMVQQVTG ++    S+     P++KPEP R         
Sbjct:   107 ARASKKSQTTFITADPSNFRQMVQQVTGAKYIDDSSSFGIFDPIVKPEPLRFVNKLPCGP 166

Query:   167 XXXXXSLPTLDTSAFLLDHHQQ---LGQAPGAGVGSV-LGSGHFDFQTSLVCDGASTGLE 222
                  ++P LDTSAFL +HHQ+   +G A      SV L SG    + S   D   + +E
Sbjct:   167 SDRSTAVPMLDTSAFLSNHHQENLAVGNAFSGNSSSVGLPSG----KPSATADPGGSAVE 222

Query:   223 FDALSNFPTLESWKVM 238
             FD    FPTLESWKVM
Sbjct:   223 FDNYPTFPTLESWKVM 238

GO:0005516 "calmodulin binding" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009651 "response to salt stress" evidence=IMP

GO:0010337 "regulation of salicylic acid metabolic process" evidence=IMP

TAIR|locus:2129700 AT4G15120 "AT4G15120" [Arabidopsis thaliana (taxid:3702)]

 Score = 113 (44.8 bits), Expect = 5.8e-05, P = 5.8e-05
 Identities = 30/74 (40%), Positives = 40/74 (54%)

Query:    77 TPTVSNVSGSDPETLPKRQRTAAVGGPNSGKITKRKARASKKTQTTFITADPANFRQMVQ 136
             T T +  + +D    P  +R A        K T+R++RAS++T TT    D ANFR MVQ
Sbjct:    26 TTTTTTATSADSPLSPDNRRVA--------KPTRRRSRASRRTPTTLFNTDTANFRAMVQ 77

Query:   137 QVTG----VRFGSA 146
             Q TG    V FGS+
Sbjct:    78 QFTGGPSAVAFGSS 91

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2090389 AT3G22160 "AT3G22160" [Arabidopsis thaliana (taxid:3702)]

 Score = 112 (44.5 bits), Expect = 7.8e-05, P = 7.8e-05
 Identities = 25/56 (44%), Positives = 35/56 (62%)

Query:   103 PNSGKITK---RKARASKKTQTTFITADPANFRQMVQQVTG----VRFGSAQVAMA 151
             P +G++TK   R++RAS++T TT +  D +NFR MVQQ TG    + FGS     A
Sbjct:    45 PETGRVTKPTRRRSRASRRTPTTLLNTDTSNFRAMVQQYTGGPSAMAFGSGNTTSA 100


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.127   0.375    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      238       217   0.00090  112 3  11 23  0.41    33
                                                     32  0.39    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  598 (64 KB)
  Total size of DFA:  169 KB (2099 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.60u 0.11s 19.71t   Elapsed:  00:00:01
  Total cpu time:  19.61u 0.11s 19.72t   Elapsed:  00:00:01
  Start:  Fri May 10 14:27:09 2013   End:  Fri May 10 14:27:10 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0051707 "response to other organism" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00023331001 SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (219 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	238
pfam05678	31	pfam05678, VQ, VQ motif	2e-07

>gnl|CDD|114404 pfam05678, VQ, VQ motif

 Score = 45.5 bits (109), Expect = 2e-07
 Identities = 13/30 (43%), Positives = 17/30 (56%)

Query: 117 KKTQTTFITADPANFRQMVQQVTGVRFGSA 146
            +   T I  DPANFR +VQ++TG     A
Sbjct: 1   YRAPPTVIHTDPANFRALVQRLTGAPAAPA 30

This short motif is found in a variety of plant proteins. These proteins vary greatly in length and are mostly composed of low complexity regions. They all conserve a short motif FXhVQChTG, where X is any amino acid and h is a hydrophobic amino acid. The function of this motif is uncertain, however one protein in this family has been found to bind the SigA sigma factor. It would seem plausible that this motif is needed for this activity and that this whole family might be involved in modulating plastid sigma factors (Bateman A pers. obs.). Length = 31

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	238
PF05678	31	VQ: VQ motif; InterPro: IPR008889 This short motif	99.01

>PF05678 VQ: VQ motif; InterPro: IPR008889 This short motif is found in a variety of plant proteins

Probab=99.01  E-value=2.9e-10  Score=74.03  Aligned_cols=29  Identities=38%  Similarity=0.646  Sum_probs=26.5

Q ss_pred             CCCCceEeecCchHHHHHHHHHhcCCCCC
Q 026455          117 KKTQTTFITADPANFRQMVQQVTGVRFGS  145 (238)
Q Consensus       117 rR~ptT~i~ad~anFRaMVQq~TG~p~~~  145 (238)
                      ++.+++||.+|++|||+||||+||.+..+
T Consensus         1 ~~~~p~vi~~d~~~Fr~lVQ~LTG~~~~~   29 (31)
T PF05678_consen    1 YRSPPTVIHTDPSNFRALVQRLTGAPSAP   29 (31)
T ss_pred             CCCCCEEEEeCHHHHHHHHHHhHCcCCCC
Confidence            46899999999999999999999999754

These proteins vary greatly in length and are mostly composed of low complexity regions. They all conserve a short motif FXhVQChTG, where X is any amino acid and h is a hydrophobic amino acid. The function of this motif is uncertain, however one protein in this family has been found to bind the SigA sigma factor Q9LDH1 from SWISSPROT. It would seem plausible that this motif is needed for this activity and that this whole family might be involved in modulating plastid sigma factors.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00