Citrus Sinensis ID: 026514

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------
Protein Sequence
MATVTESSEDEKPNVAAASDTVFKSQSLEDGNPWIDNAVQQVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVAASHPFITAGGAIGLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGELPRREASRFRSQVSFLY
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccEEEEcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
matvtessedekpnvaaasdtvfksqsledgnpwiDNAVQQVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHvaashpfitaggaiglgsfllkrprhflYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGELPRREASRFRSQVSFLY
Flexible Loop (DISEMBL)
matvtessedekpnvaaasdtvfksqsledgnpwIDNAVQQVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVAASHPFITAGGAIGLGSFLLKRPRHFLYYNTLRLFASeesllsradtkvKQLRQSIDrlkaeseklekvalvaedelirgrtklrqagkqiqgvinSAYKIERQAAGLkdivgelprreasrfrsqvsfly
Low Complexity Region (SEG)
MATVTESSEDEKPNVAAASDTVFKSQSLEDGNPWIDNAVQQVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVAASHPFITAGGAIGLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGELPRREASRFRSQVSFLY
Disordered region (IsUnstruct)
*******************************NPWIDNAVQQVMIYRKIVEESIDSAI*********TRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVAASHPFITAGGAIGLGSFLLKRPRHFLYYNTLRLFASE******************************VALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIV*******************
Disordered Region (DISOPRED)
*******************************NPWIDNAVQQVMIYRKIVE*************************QQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVAASHPFITAGGAIGLGSFLLKRPRHFLYYNTLRLFASEESL*****************************LVAE*EL*****************************GLKDIVGELPRREASRFRSQVSFL*
Disordered Region (DISEMBL)
****************AASDTVFKSQSLEDGNPWIDNAVQQVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVAASHPFITAGGAIGLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGELPRRE************
Disordered Region (DISPRO)
*************************QSLEDGNPWIDNAVQQVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVAASHPFITAGGAIGLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGELPRREASRFRSQV*FLY
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATVTESSEDEKPNVAAASDTVFKSQSLEDGNPWIDNAVQQVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVAASHPFITAGGAIGLGSFLLKRPRHFLYYNTLRLFASEESLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGELPRREASRFRSQVSFLY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	237
255541158	267	conserved hypothetical protein [Ricinus	0.995	0.883	0.648	4e-81
224067612	270	predicted protein [Populus trichocarpa]	0.995	0.874	0.624	5e-77
225453510	260	PREDICTED: uncharacterized protein LOC10	0.898	0.819	0.672	9e-75
297828223	272	hypothetical protein ARALYDRAFT_903941 [	0.886	0.772	0.619	4e-73
388518061	262	unknown [Lotus japonicus]	0.995	0.900	0.599	5e-73
18406697	272	uncharacterized protein [Arabidopsis tha	0.886	0.772	0.614	9e-73
388502614	262	unknown [Lotus japonicus]	0.995	0.900	0.594	4e-72
388494290	264	unknown [Medicago truncatula]	0.983	0.882	0.596	4e-72
356539160	258	PREDICTED: uncharacterized protein LOC10	0.983	0.903	0.572	2e-69
449445698	284	PREDICTED: uncharacterized protein LOC10	0.894	0.746	0.572	2e-66

>gi|255541158|ref|XP_002511643.1| conserved hypothetical protein [Ricinus communis] gi|223548823|gb|EEF50312.1| conserved hypothetical protein [Ricinus communis]

 Score =  306 bits (785), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 157/242 (64%), Positives = 184/242 (76%), Gaps = 6/242 (2%)

Query: 1   MATVTE--SSEDEKPNVAAASD----TVFKSQSLEDGNPWIDNAVQQVMIYRKIVEESID 54
           M T+ E  S  +EKP+  A S      + K ++LE+  PWID A+QQ + Y+K +EE++D
Sbjct: 1   MTTIAEESSPSEEKPSPPAPSHFPEAEMIKYKTLEEVTPWIDYAIQQALTYQKTIEEAVD 60

Query: 55  SAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVAASHPFIT 114
            A +A RSR S+ R T+S HF QT+D LQDVKSE  AYED   GKVK+G++VAASHP IT
Sbjct: 61  DATKALRSRFSEIRSTSSAHFNQTMDSLQDVKSELGAYEDTLFGKVKDGVNVAASHPLIT 120

Query: 115 AGGAIGLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEK 174
            G A+GLG  L KRPR FLYYNTLRLF SEE+LLS+AD KVK+L+QSI  L+AESEKLEK
Sbjct: 121 GGVAVGLGFVLFKRPRRFLYYNTLRLFVSEEALLSKADAKVKELQQSISLLRAESEKLEK 180

Query: 175 VALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGELPRREASRFRSQVS 234
            A  AE ELIRGRTKLRQAGKQI GVI S YKIERQAAGLKDI+ ELP REASRFRSQVS
Sbjct: 181 RASSAEGELIRGRTKLRQAGKQICGVITSTYKIERQAAGLKDIIRELPSREASRFRSQVS 240

Query: 235 FL 236
            L
Sbjct: 241 SL 242

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067612|ref|XP_002302514.1| predicted protein [Populus trichocarpa] gi|222844240|gb|EEE81787.1| predicted protein [Populus trichocarpa]

 Score =  293 bits (749), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 153/245 (62%), Positives = 186/245 (75%), Gaps = 9/245 (3%)

Query: 1   MATVTES-SEDEKPNV------AAASD--TVFKSQSLEDGNPWIDNAVQQVMIYRKIVEE 51
           M T  ES S +EKP+        A +D  ++ KS++LE+  PWIDNA+QQ +IY+K +++
Sbjct: 1   MPTDAESPSPEEKPSTHLPPRPTAETDLTSILKSKALEETAPWIDNALQQALIYQKTIQD 60

Query: 52  SIDSAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVAASHP 111
           S+D AIE+S+SR S+   T+  HF QT+D LQ   SE   YED   GK KEGI+VAASHP
Sbjct: 61  SLDIAIESSKSRFSEIITTSQAHFSQTIDSLQYFTSEIGVYEDKLFGKAKEGINVAASHP 120

Query: 112 FITAGGAIGLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEK 171
            IT+  A+GLG  +LKRPR  LYY TLRLF SEE+LLS+AD KVK+LRQSI  LKAESEK
Sbjct: 121 LITSAVAVGLGFVVLKRPRRILYYKTLRLFTSEEALLSQADAKVKELRQSISLLKAESEK 180

Query: 172 LEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGELPRREASRFRS 231
           LE+ A +AE+ELIRGRTKLRQAGKQIQGVI SAYKIERQA GL+DI+ ELPR EAS+FRS
Sbjct: 181 LERRASLAEEELIRGRTKLRQAGKQIQGVIRSAYKIERQATGLRDILRELPRAEASKFRS 240

Query: 232 QVSFL 236
           QVS L
Sbjct: 241 QVSSL 245

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453510|ref|XP_002277999.1| PREDICTED: uncharacterized protein LOC100266783 [Vitis vinifera] gi|297734546|emb|CBI16597.3| unnamed protein product [Vitis vinifera]

 Score =  285 bits (730), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 144/214 (67%), Positives = 170/214 (79%), Gaps = 1/214 (0%)

Query: 24  KSQSLEDG-NPWIDNAVQQVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYL 82
           K +SLE+  + WI+  V Q  +  K ++++++S IEAS SR SQ   T+S H QQT++ L
Sbjct: 22  KPKSLEEAASSWIEYGVNQAQLLHKTLDDTVNSFIEASGSRFSQILSTSSAHLQQTIESL 81

Query: 83  QDVKSEYAAYEDAAVGKVKEGIHVAASHPFITAGGAIGLGSFLLKRPRHFLYYNTLRLFA 142
           +DVKSEY  YED AVGK+KEGI VAAS+P IT+G  +GLG  LLKRPRHFLYYNTLRL  
Sbjct: 82  KDVKSEYDVYEDLAVGKIKEGILVAASNPLITSGVCVGLGCLLLKRPRHFLYYNTLRLLV 141

Query: 143 SEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVIN 202
           SEES+++RAD KV +LR+SID LKAESEKLEK AL AEDE+ RGRTKLRQAG QIQ VI 
Sbjct: 142 SEESMVARADAKVNELRKSIDLLKAESEKLEKRALQAEDEMKRGRTKLRQAGNQIQSVIR 201

Query: 203 SAYKIERQAAGLKDIVGELPRREASRFRSQVSFL 236
           SAYKIERQA GLKDI+GELP REASRFRSQVS L
Sbjct: 202 SAYKIERQARGLKDILGELPSREASRFRSQVSKL 235

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297828223|ref|XP_002881994.1| hypothetical protein ARALYDRAFT_903941 [Arabidopsis lyrata subsp. lyrata] gi|297327833|gb|EFH58253.1| hypothetical protein ARALYDRAFT_903941 [Arabidopsis lyrata subsp. lyrata]

 Score =  280 bits (716), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 130/210 (61%), Positives = 172/210 (81%)

Query: 25  SQSLEDGNPWIDNAVQQVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQD 84
           + ++E+   WID+A++Q ++Y+K + E++DS I+AS++RLSQ R T+  H  QT+D L+D
Sbjct: 36  TTTVENAASWIDDALRQALVYQKTISETVDSTIDASKARLSQIRDTSVAHTSQTIDSLRD 95

Query: 85  VKSEYAAYEDAAVGKVKEGIHVAASHPFITAGGAIGLGSFLLKRPRHFLYYNTLRLFASE 144
           + SEY  YE    GK+K+G++VAASHP I+   A G+G F LK+ R F+YYNT+R+F SE
Sbjct: 96  IASEYNVYEQMVFGKIKDGVNVAASHPLISGTLAFGVGIFALKKTRKFVYYNTVRMFVSE 155

Query: 145 ESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSA 204
           E+LLSRAD KVK+LRQS+DRLKAESEKLE+VA VAE+ELIRGR KLRQAGKQI+G I+SA
Sbjct: 156 EALLSRADLKVKELRQSMDRLKAESEKLERVATVAEEELIRGRMKLRQAGKQIRGAISSA 215

Query: 205 YKIERQAAGLKDIVGELPRREASRFRSQVS 234
           YKIE+QAAGLKD++ ELP REASRFR+Q+S
Sbjct: 216 YKIEKQAAGLKDVLKELPTREASRFRTQIS 245

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388518061|gb|AFK47092.1| unknown [Lotus japonicus]

 Score =  280 bits (715), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 142/237 (59%), Positives = 176/237 (74%), Gaps = 1/237 (0%)

Query: 1   MATVTESSEDEKPNVAAAS-DTVFKSQSLEDGNPWIDNAVQQVMIYRKIVEESIDSAIEA 59
           MATV ESSE + P  A  +  T     +L+   P+ID AV Q ++Y+K   ++++SAI+A
Sbjct: 1   MATVVESSESDTPPPAPGNHSTTSNRPTLDPTTPFIDYAVGQALLYQKAFNDAVESAIDA 60

Query: 60  SRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVAASHPFITAGGAI 119
           S+SR SQ R T+S HFQQTL  L D KS+Y AYED   GK+KEG+ VA+SHP IT G A 
Sbjct: 61  SKSRFSQIRSTSSAHFQQTLYALDDFKSQYNAYEDLLFGKIKEGVLVASSHPVITCGAAA 120

Query: 120 GLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVA 179
             G  + KRPR  LYYNT+RLF +EE+L+SRA  +VK+LR+SID LKAE EK EK AL A
Sbjct: 121 ATGLMVFKRPRRILYYNTMRLFLNEETLISRASAEVKELRKSIDLLKAEGEKWEKSALHA 180

Query: 180 EDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGELPRREASRFRSQVSFL 236
           E++ + GRTKLRQAGKQI+ VI+SAYKIER+A GLKDI+GELPRREAS FRSQVS L
Sbjct: 181 EEQFLHGRTKLRQAGKQIRNVIDSAYKIERRAGGLKDILGELPRREASHFRSQVSKL 237

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18406697|ref|NP_566034.1| uncharacterized protein [Arabidopsis thaliana] gi|15010568|gb|AAK73943.1| At2g45060/T14P1.13 [Arabidopsis thaliana] gi|21553572|gb|AAM62665.1| unknown [Arabidopsis thaliana] gi|23505975|gb|AAN28847.1| At2g45060/T14P1.13 [Arabidopsis thaliana] gi|330255407|gb|AEC10501.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  278 bits (712), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 129/210 (61%), Positives = 171/210 (81%)

Query: 25  SQSLEDGNPWIDNAVQQVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQD 84
           + ++E+   WID+A++Q ++Y+K + E++DS I+AS++RLSQ R T+  H  QT+D L+D
Sbjct: 36  TTTVENAASWIDDALRQALVYQKTITETVDSTIDASKARLSQIRDTSVAHTSQTIDSLRD 95

Query: 85  VKSEYAAYEDAAVGKVKEGIHVAASHPFITAGGAIGLGSFLLKRPRHFLYYNTLRLFASE 144
           + SEY  YE    GK+K+G++VAASHP I+   A G+G F LK+ R F+YYNT+R+F SE
Sbjct: 96  IASEYNVYEQMVFGKIKDGVNVAASHPLISGTLAFGVGIFALKKTRRFVYYNTVRMFVSE 155

Query: 145 ESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSA 204
           E+LLSRAD KVK+LRQS+DRLKAESEKLE+VA VAE+E IRGR KLRQAGKQI+G I+SA
Sbjct: 156 EALLSRADLKVKELRQSMDRLKAESEKLERVATVAEEEFIRGRMKLRQAGKQIRGAISSA 215

Query: 205 YKIERQAAGLKDIVGELPRREASRFRSQVS 234
           YKIE+QAAGLKD++ ELP REASRFR+Q+S
Sbjct: 216 YKIEKQAAGLKDVLKELPTREASRFRTQIS 245

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388502614|gb|AFK39373.1| unknown [Lotus japonicus]

 Score =  276 bits (707), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 141/237 (59%), Positives = 175/237 (73%), Gaps = 1/237 (0%)

Query: 1   MATVTESSEDEKPNVAAAS-DTVFKSQSLEDGNPWIDNAVQQVMIYRKIVEESIDSAIEA 59
           MATV ESSE + P  A  +  T     +L+   P+ID AV Q ++Y+K   ++++SAI+A
Sbjct: 1   MATVVESSESDTPPPAPGNHSTTSNRPTLDPTTPFIDYAVGQALLYQKAFNDAVESAIDA 60

Query: 60  SRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVAASHPFITAGGAI 119
           S+SR SQ R T+S HFQQTL  L D KS+Y AYED   GK+KEG+ VA+SHP IT G A 
Sbjct: 61  SKSRFSQIRSTSSAHFQQTLYALDDFKSQYNAYEDLLFGKIKEGVLVASSHPVITCGAAA 120

Query: 120 GLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVA 179
             G  + KRPR  LYYNT+RLF +EE+L+SRA  +VK+LR+SID LKAE EK EK AL A
Sbjct: 121 ATGLMVFKRPRRILYYNTMRLFLNEETLISRASAEVKELRKSIDLLKAEGEKWEKSALHA 180

Query: 180 EDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGELPRREASRFRSQVSFL 236
           E++ + GRTKL QAGKQI+ VI+SAYKIER+A GLKDI+GELPRREAS FRSQVS L
Sbjct: 181 EEQFLHGRTKLGQAGKQIRNVIDSAYKIERRAGGLKDILGELPRREASHFRSQVSKL 237

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388494290|gb|AFK35211.1| unknown [Medicago truncatula]

 Score =  276 bits (707), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 142/238 (59%), Positives = 174/238 (73%), Gaps = 5/238 (2%)

Query: 1   MATVTESSEDEKPNVAAAS----DTVFKSQSLEDGNPWIDNAVQQVMIYRKIVEESIDSA 56
           MATV ESSE E P    A      T    Q+L D  P+ID AV  V+ Y+K   +++DSA
Sbjct: 1   MATVAESSEPEAPPSTPAPTVNQSTTTNPQTL-DVKPFIDYAVGHVLYYQKTFNDAVDSA 59

Query: 57  IEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVAASHPFITAG 116
           I+AS SR SQ R T+S HF Q+LDYL D KS+Y AYE+   GK+KEG+ VAASHP IT+G
Sbjct: 60  IDASTSRFSQIRSTSSAHFHQSLDYLDDFKSQYNAYEELLFGKIKEGVLVAASHPVITSG 119

Query: 117 GAIGLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVA 176
               +G  +LKRPR FLYYN  RLF SEESL+S+A  +VK+LRQSID LK+E E++EK A
Sbjct: 120 ATASMGLLVLKRPRRFLYYNMQRLFVSEESLVSKASEEVKELRQSIDLLKSEVERMEKSA 179

Query: 177 LVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGELPRREASRFRSQVS 234
           L AE++ + G+TKLRQAGKQI+ VI SAYKIER+A GLKDI+GELP+ EAS FRSQVS
Sbjct: 180 LHAEEQFLHGKTKLRQAGKQIRNVIQSAYKIERRAGGLKDILGELPKSEASHFRSQVS 237

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539160|ref|XP_003538068.1| PREDICTED: uncharacterized protein LOC100804339 [Glycine max]

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 135/236 (57%), Positives = 170/236 (72%), Gaps = 3/236 (1%)

Query: 1   MATVTESSEDEKPNVAAASDTVFKSQSLEDGNPWIDNAVQQVMIYRKIVEESIDSAIEAS 60
           MA V ES E +  N ++ ++     Q+L +  P++D A+ Q  +Y K   +++DS I+ +
Sbjct: 1   MAMVAESPESDSDNNSSKTNN---PQTLNETAPFLDYALAQAQLYHKAFNDAVDSTIDTA 57

Query: 61  RSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVAASHPFITAGGAIG 120
           +SR SQ R T+S HF QTLD L D+KS+Y AYE    GK+KEG+ VAASHP IT G    
Sbjct: 58  KSRFSQIRSTSSAHFHQTLDSLDDLKSQYTAYEGLLFGKIKEGVVVAASHPVITCGATAS 117

Query: 121 LGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAE 180
           LG  +LKRPR  LYYNTLRLF SEES++SRA  +VK+LRQSI+ LKAE EKLEK AL AE
Sbjct: 118 LGLLVLKRPRRVLYYNTLRLFVSEESMISRAHAEVKELRQSIELLKAEGEKLEKSALHAE 177

Query: 181 DELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGELPRREASRFRSQVSFL 236
           ++ + GRTKLR AGKQI+ VI SAYKIE +A GLKDI+GELP+RE S FRSQVS L
Sbjct: 178 EQFLHGRTKLRHAGKQIRNVIQSAYKIEIRAGGLKDILGELPKRETSLFRSQVSKL 233

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445698|ref|XP_004140609.1| PREDICTED: uncharacterized protein LOC101214960 [Cucumis sativus]

 Score =  258 bits (659), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 134/234 (57%), Positives = 169/234 (72%), Gaps = 22/234 (9%)

Query: 24  KSQSLED-GNPWIDNAVQQVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYL 82
           K QSLED   PW + A QQ ++Y++ ++ S++SAIE S+SRLSQ R T+  HFQ+ +D  
Sbjct: 27  KPQSLEDLAKPWAEYAAQQALLYQRAIDHSLESAIEVSKSRLSQIRSTSFPHFQKAVDSF 86

Query: 83  QDVKSEYAAYEDAAVGKVKEGIH--------------------VAASHPFITAGGAIGLG 122
            + KSE AAYE+   GK++ G+                     VAASHP I+ G A G+G
Sbjct: 87  WEAKSELAAYENLVFGKIR-GLFLIYHCDGKLTLPSFVFSFSFVAASHPLISCGVATGMG 145

Query: 123 SFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDE 182
             + K+PR+FLYY T+RLF +EESLLS+AD KVK+LRQSIDR+K ESE+LEK  L AEDE
Sbjct: 146 FLVFKKPRNFLYYKTIRLFVNEESLLSKADAKVKELRQSIDRIKVESERLEKRTLQAEDE 205

Query: 183 LIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGELPRREASRFRSQVSFL 236
           LIRGRTKLRQAGKQI+GVI SA+KIER+A GLKDI+ +LP REASRFR+QVS L
Sbjct: 206 LIRGRTKLRQAGKQIEGVIQSAHKIERKARGLKDILADLPTREASRFRTQVSNL 259

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	237
TAIR|locus:2055578	272	AT2G45060 "AT2G45060" [Arabido	0.877	0.764	0.620	1.7e-66
TAIR|locus:2131473	263	AT4G26410 "AT4G26410" [Arabido	0.822	0.741	0.333	4.2e-24

TAIR|locus:2055578 AT2G45060 "AT2G45060" [Arabidopsis thaliana (taxid:3702)]

 Score = 676 (243.0 bits), Expect = 1.7e-66, P = 1.7e-66
 Identities = 129/208 (62%), Positives = 170/208 (81%)

Query:    27 SLEDGNPWIDNAVQQVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQDVK 86
             ++E+   WID+A++Q ++Y+K + E++DS I+AS++RLSQ R T+  H  QT+D L+D+ 
Sbjct:    38 TVENAASWIDDALRQALVYQKTITETVDSTIDASKARLSQIRDTSVAHTSQTIDSLRDIA 97

Query:    87 SEYAAYEDAAVGKVKEGIHVAASHPFITAGGAIGLGSFLLKRPRHFLYYNTLRLFASEES 146
             SEY  YE    GK+K+G++VAASHP I+   A G+G F LK+ R F+YYNT+R+F SEE+
Sbjct:    98 SEYNVYEQMVFGKIKDGVNVAASHPLISGTLAFGVGIFALKKTRRFVYYNTVRMFVSEEA 157

Query:   147 LLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYK 206
             LLSRAD KVK+LRQS+DRLKAESEKLE+VA VAE+E IRGR KLRQAGKQI+G I+SAYK
Sbjct:   158 LLSRADLKVKELRQSMDRLKAESEKLERVATVAEEEFIRGRMKLRQAGKQIRGAISSAYK 217

Query:   207 IERQAAGLKDIVGELPRREASRFRSQVS 234
             IE+QAAGLKD++ ELP REASRFR+Q+S
Sbjct:   218 IEKQAAGLKDVLKELPTREASRFRTQIS 245

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0006007 "glucose catabolic process" evidence=RCA

TAIR|locus:2131473 AT4G26410 "AT4G26410" [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
 Identities = 67/201 (33%), Positives = 114/201 (56%)

Query:    35 IDNAVQQVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYED 94
             I+ A + V   ++ V+ES D+A+ ++RS     R  ++  F+   D++    ++Y  YE+
Sbjct:    41 IEGAEKWVGDLQRTVKESKDTAMRSARS----LRENSTSQFRSIQDFIPHALTQYKTYEN 96

Query:    95 AAVGKVKEGIHVAASHPFITAGGAIGLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTK 154
             A   KV + +  A  HP    G  +     L++ PR FL+ NTL  F SEE+   +A+  
Sbjct:    97 AFFSKVTDELIYAKEHPAAAIGIGVAASLVLMRGPRRFLFRNTLGRFQSEEAQFLKAEKH 156

Query:   155 VKQLRQSIDRLKAESEKL-EKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAG 213
             V++L  S+D +K ES KL E+ AL AE ++ RG ++L  +G  I  +  S +K E +AA 
Sbjct:   157 VQELNMSVDLMKKESRKLLERTAL-AEKDMKRGLSELMNSGNDIHRLAKSVHKAECEAAD 215

Query:   214 LKDIVGELPRREASRFRSQVS 234
             L D + ++P R+A + R++V+
Sbjct:   216 LMDGLRQIPGRDAIKLRAEVA 236


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.129   0.343    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      237       237   0.00090  113 3  10 23  0.44    33
                                                     32  0.43    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  591 (63 KB)
  Total size of DFA:  200 KB (2114 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  35.51u 0.19s 35.70t   Elapsed:  00:00:01
  Total cpu time:  35.51u 0.19s 35.70t   Elapsed:  00:00:01
  Start:  Fri May 10 17:12:43 2013   End:  Fri May 10 17:12:44 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00021319 hypothetical protein (270 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	237
PF05957	94	DUF883: Bacterial protein of unknown function (DUF	97.76
PRK10404	101	hypothetical protein; Provisional	96.71
PRK10132	108	hypothetical protein; Provisional	95.56
COG4575	104	ElaB Uncharacterized conserved protein [Function u	94.46
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	92.69
PF06008	264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	91.19
PRK11637	428	AmiB activator; Provisional	91.07
PRK09039	343	hypothetical protein; Validated	87.22
PF09769	158	ApoO: Apolipoprotein O; InterPro: IPR019166 Apolip	85.98
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	85.14
PRK10132	108	hypothetical protein; Provisional	84.72
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	81.92
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	80.56

>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD

Probab=97.76  E-value=0.0006  Score=51.96  Aligned_cols=83  Identities=18%  Similarity=0.231  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhChhhHHHHHH
Q 026514           40 QQVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVAASHPFITAGGAI  119 (237)
Q Consensus        40 ~qa~~~qk~~~es~d~ai~aa~s~~s~~~~~ss~h~~~~~d~l~~~~sey~~yEd~~f~kiKegv~~A~shP~~a~g~a~  119 (237)
                      ++..-+..-+.+-++++-+.+.....++++.-..++.++.+.+.++..+.+.--....   ...-..+++||+-+.|+|+
T Consensus         5 ~~l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~~~~V~e~P~~svgiAa   81 (94)
T PF05957_consen    5 AELEQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAEDAADQAREQAREAA---EQTEDYVRENPWQSVGIAA   81 (94)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHChHHHHHHHH
Confidence            3444566677777777777777888888888888888777777766555433322222   2234567899999999999


Q ss_pred             HHHHhh
Q 026514          120 GLGSFL  125 (237)
Q Consensus       120 ~aglll  125 (237)
                      ++|||+
T Consensus        82 gvG~ll   87 (94)
T PF05957_consen   82 GVGFLL   87 (94)
T ss_pred             HHHHHH
Confidence            999986

>PRK10404 hypothetical protein; Provisional

Probab=96.71  E-value=0.031  Score=44.51  Aligned_cols=81  Identities=12%  Similarity=0.201  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHhHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhhHHHhhhChhhHHHHHH
Q 026514           41 QVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAA-YEDAAVGKVKEGIHVAASHPFITAGGAI  119 (237)
Q Consensus        41 qa~~~qk~~~es~d~ai~aa~s~~s~~~~~ss~h~~~~~d~l~~~~sey~~-yEd~~f~kiKegv~~A~shP~~a~g~a~  119 (237)
                      .-..+-.++.+-..++-+.+.....++|+....++..+++.|.++...+.. +.+    .+...-.++++||+-++|+++
T Consensus        13 dl~~L~~dle~Ll~~~~~~a~e~~~~lR~r~~~~L~~ar~~l~~~~~~~~~~~k~----aa~~td~yV~e~Pw~avGiaa   88 (101)
T PRK10404         13 DLTLLSETLEEVLRSSGDPADQKYVELKARAEKALDDVKKRVSQASDSYYYRAKQ----AVYRADDYVHEKPWQGIGVGA   88 (101)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH----HHHHHHHHHHhCcHHHHHHHH
Confidence            334455555555555666677777778888888888888777766554322 111    122234667889999999999


Q ss_pred             HHHHhh
Q 026514          120 GLGSFL  125 (237)
Q Consensus       120 ~aglll  125 (237)
                      ++|||+
T Consensus        89 gvGlll   94 (101)
T PRK10404         89 AVGLVL   94 (101)
T ss_pred             HHHHHH
Confidence            999875

>PRK10132 hypothetical protein; Provisional

Probab=95.56  E-value=0.27  Score=39.76  Aligned_cols=61  Identities=13%  Similarity=0.228  Sum_probs=36.3

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh----HHHhhhChhhHHHHHHHHHHhh
Q 026514           57 IEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEG----IHVAASHPFITAGGAIGLGSFL  125 (237)
Q Consensus        57 i~aa~s~~s~~~~~ss~h~~~~~d~l~~~~sey~~yEd~~f~kiKeg----v~~A~shP~~a~g~a~~aglll  125 (237)
                      -+.+.....++|+.-...+..+.+.|.+...-        ..+.|+.    -..+++||.-++|+++++|||+
T Consensus        36 ~~~~~~~~~~lR~r~~~~L~~ar~~l~~~~~~--------~~~~~~a~~~~~~~V~~~Pw~svgiaagvG~ll  100 (108)
T PRK10132         36 GSDAKGEAEAARRKAQALLKETRARMHGRTRV--------QQAARDAVGCADTFVRERPWCSVGTAAAVGIFI  100 (108)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHH--------HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            33444444556666666666666555543321        1222333    3456789999999999988875

>COG4575 ElaB Uncharacterized conserved protein [Function unknown]

Probab=94.46  E-value=0.53  Score=38.50  Aligned_cols=83  Identities=22%  Similarity=0.282  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH----HhhhCh
Q 026514           36 DNAVQQVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIH----VAASHP  111 (237)
Q Consensus        36 ~~a~~qa~~~qk~~~es~d~ai~aa~s~~s~~~~~ss~h~~~~~d~l~~~~sey~~yEd~~f~kiKegv~----~A~shP  111 (237)
                      +..+.--+.|--++++-.++.=..|.-...+||..--+-+..+++-+.+..       |.+....|+.+.    ++.+||
T Consensus        11 ~~l~~el~~L~d~lEevL~ssg~~a~~e~~~lR~r~~~~Lk~~r~rl~~~~-------d~v~~~sk~a~~~tD~yV~e~P   83 (104)
T COG4575          11 DQLLAELQELLDTLEEVLKSSGSLAGDEAEELRSKAESALKEARDRLGDTG-------DAVVQRSKAAADATDDYVRENP   83 (104)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHhhh-------hHHHHHHHHHHHHHHHHHHcCC
Confidence            444444444445555555555555666666787776666666666665554       555556666654    568899


Q ss_pred             hhHHHHHHHHHHhh
Q 026514          112 FITAGGAIGLGSFL  125 (237)
Q Consensus       112 ~~a~g~a~~aglll  125 (237)
                      .=++|+++++|||+
T Consensus        84 Wq~VGvaAaVGlll   97 (104)
T COG4575          84 WQGVGVAAAVGLLL   97 (104)
T ss_pred             chHHHHHHHHHHHH
Confidence            99999999999875

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=92.69  E-value=5.2  Score=33.33  Aligned_cols=105  Identities=20%  Similarity=0.271  Sum_probs=54.2

Q ss_pred             hhhHHHHHHHHHHhhccCchhHHHHHhhh-hhcCh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026514          111 PFITAGGAIGLGSFLLKRPRHFLYYNTLR-LFASE-------ESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDE  182 (237)
Q Consensus       111 P~~a~g~a~~aglllLr~PRRfLyr~Tlg-rF~SE-------Eall~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E  182 (237)
                      +.+.+++.+++|++++-.-=.++...... ..+.+       +.-+...+....++...++.+.+....+......-+++
T Consensus        38 s~~lg~~~lAlg~vL~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~  117 (191)
T PF04156_consen   38 SFILGIALLALGVVLLSLGLLCLLSKRPVQSVRPQQIEEPRLQGELSELQQQLQQLQEELDQLQERIQELESELEKLKED  117 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccccccchHHHHHhhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445555555666665554444333221 11111       11344444445555555555555555544444444555


Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 026514          183 LIRGRTKLRQAGKQIQGVINSAYKIERQAAGLK  215 (237)
Q Consensus       183 ~~RGrtkLr~ag~qIq~l~~s~yk~E~~A~gL~  215 (237)
                      +...+..++.....++.+-.....+++....|.
T Consensus       118 ~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~  150 (191)
T PF04156_consen  118 LQELRELLKSVEERLDSLDESIKELEKEIRELQ  150 (191)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555556666666666666666666666666665

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells

Probab=91.19  E-value=5.7  Score=35.23  Aligned_cols=111  Identities=14%  Similarity=0.208  Sum_probs=83.9

Q ss_pred             hhccCchhHHH---------HHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 026514          124 FLLKRPRHFLY---------YNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAG  194 (237)
Q Consensus       124 llLr~PRRfLy---------r~TlgrF~SEEall~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag  194 (237)
                      ..+|.|.+++|         +.-.+.+..-...+...+.++..|...++.+.....+....+.....+..+-+..-..-.
T Consensus        14 ~~~~~~~~l~~~~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~   93 (264)
T PF06008_consen   14 GAWPAPYKLLSSIEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLE   93 (264)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35689999998         223334444555788888888888888888888888877777777777777666777777


Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHhhCcCCchhHHHHHhhhh
Q 026514          195 KQIQGVINSAYKIERQAAGLKDIVGELPRREASRFRSQVS  234 (237)
Q Consensus       195 ~qIq~l~~s~yk~E~~A~gL~d~LrelP~reA~~lRseVa  234 (237)
                      ..|+.+...|-.+-.++.+|=.....+|+.+-.+...|+-
T Consensus        94 ~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~  133 (264)
T PF06008_consen   94 QFIQNLQDNIQELIEQVESLNENGDQLPSEDLQRALAEAQ  133 (264)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHH
Confidence            8888888888888888888877777788877776666654

Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex

>PRK11637 AmiB activator; Provisional

Probab=91.07  E-value=4.8  Score=38.05  Aligned_cols=60  Identities=8%  Similarity=0.187  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 026514          148 LSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKI  207 (237)
Q Consensus       148 l~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~qIq~l~~s~yk~  207 (237)
                      ++..++++..+...++.+..++..+.+.....++++..=..+|...-.++...++.+|+-
T Consensus        77 l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~~  136 (428)
T PRK11637         77 LKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFRQ  136 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            333444444444455555555555555555555555555556666666666666666663

>PRK09039 hypothetical protein; Validated

Probab=87.22  E-value=26  Score=32.93  Aligned_cols=154  Identities=16%  Similarity=0.182  Sum_probs=103.0

Q ss_pred             HHHHHHHHHhHHHHHHHHhhhhhhhh---hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH--HhhhChhhHHHH
Q 026514           43 MIYRKIVEESIDSAIEASRSRLSQTR---LTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIH--VAASHPFITAGG  117 (237)
Q Consensus        43 ~~~qk~~~es~d~ai~aa~s~~s~~~---~~ss~h~~~~~d~l~~~~sey~~yEd~~f~kiKegv~--~A~shP~~a~g~  117 (237)
                      |++=.--.+..|..++...++++++-   +---..-..+++-+..+..+|...|..== .++.-..  ....+|.-    
T Consensus        41 q~fLs~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~-~Le~~~~~~~~~~~~~~----  115 (343)
T PRK09039         41 QFFLSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERS-RLQALLAELAGAGAAAE----  115 (343)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhhcchHH----
Confidence            33333334566777777776665543   33445566777788888888886554211 1111000  00011211    


Q ss_pred             HHHHHHhhccCchhHHHHHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 026514          118 AIGLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQI  197 (237)
Q Consensus       118 a~~aglllLr~PRRfLyr~TlgrF~SEEall~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~qI  197 (237)
                       ..++-+             -..+..+.+.++.+...|.-|++-|+.+++.+..|+.....+|.+-.-=+.++..-+..|
T Consensus       116 -~~~~~l-------------~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L  181 (343)
T PRK09039        116 -GRAGEL-------------AQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRL  181 (343)
T ss_pred             -HHHHHH-------------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             111111             277889999999999999999999999999999999999999999988889999999999


Q ss_pred             HHHHHH-HHHHHHHHhhhH
Q 026514          198 QGVINS-AYKIERQAAGLK  215 (237)
Q Consensus       198 q~l~~s-~yk~E~~A~gL~  215 (237)
                      +..+-. +=.+++-...+.
T Consensus       182 ~~a~~~~~~~l~~~~~~~~  200 (343)
T PRK09039        182 NVALAQRVQELNRYRSEFF  200 (343)
T ss_pred             HHHHHHHHHHHHHhHHHHH
Confidence            988744 555555555553

>PF09769 ApoO: Apolipoprotein O; InterPro: IPR019166 Apolipoproteins are proteins that binds to lipids

Probab=85.98  E-value=1.8  Score=35.81  Aligned_cols=73  Identities=25%  Similarity=0.272  Sum_probs=52.1

Q ss_pred             hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhCh------hhHHHHHHHHHHhhccC---chhHH
Q 026514           63 RLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVAASHP------FITAGGAIGLGSFLLKR---PRHFL  133 (237)
Q Consensus        63 ~~s~~~~~ss~h~~~~~d~l~~~~sey~~yEd~~f~kiKegv~~A~shP------~~a~g~a~~aglllLr~---PRRfL  133 (237)
                      .++.+|..-..++..+++.++.+++.|...|+.+=+.++.    .+..|      .+.+|+++.+|++|-|+   ++||+
T Consensus        46 ~i~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----L~~~~~~llP~~~~I~vaglaGsIlar~r~~~~R~~  121 (158)
T PF09769_consen   46 QIRKAREFLQPYYSWAQDELNTVKSKYYNAERSVTSTIAS----LHPPPEELLPGLGYIGVAGLAGSILARRRGIFKRFL  121 (158)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hcCCCcccCcceeeeehhhhheeeeeccCcchhhhH
Confidence            3445677778889999999999999999999876666643    33333      34567778888888873   56666


Q ss_pred             HHHhhh
Q 026514          134 YYNTLR  139 (237)
Q Consensus       134 yr~Tlg  139 (237)
                      |=-.+|
T Consensus       122 ~P~~~g  127 (158)
T PF09769_consen  122 YPLAFG  127 (158)
T ss_pred             HHHHHH
Confidence            655554

Members of this family promote cholesterol efflux from macrophage cells. They are present in various lipoprotein complexes, including HDL, LDL and VLDL. Apolipoprotein O is a 198 amino acids protein that contains a 23 amino acids long signal peptide. The apoprotein is secreted by a microsomal triglyceride transfer protein (MTTP)-dependent mechanism, probably as a VLDL-associated protein that is subsequently transferred to HDL. Apolipoprotein O is the first chondroitine sulphate chain containing apolipoprotein [].

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=85.14  E-value=8.8  Score=35.17  Aligned_cols=85  Identities=15%  Similarity=0.228  Sum_probs=49.9

Q ss_pred             HHHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 026514          134 YYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQA--GKQIQGVINSAYKIERQA  211 (237)
Q Consensus       134 yr~TlgrF~SEEall~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~a--g~qIq~l~~s~yk~E~~A  211 (237)
                      ++..+...++   .+.++-+.+..+...++.++++...++....-.++.+.+++.+|.+.  -+++..|-..++.+..+.
T Consensus        29 ~~~~l~k~~~---e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~  105 (239)
T COG1579          29 IRKALKKAKA---ELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERI  105 (239)
T ss_pred             hHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence            4444444444   45556666666666666666666666666666666666666666321  345555666666666666


Q ss_pred             hhhHHhhCcC
Q 026514          212 AGLKDIVGEL  221 (237)
Q Consensus       212 ~gL~d~Lrel  221 (237)
                      ..|.|-|.++
T Consensus       106 ~~le~el~~l  115 (239)
T COG1579         106 NSLEDELAEL  115 (239)
T ss_pred             HHHHHHHHHH
Confidence            6655555443

>PRK10132 hypothetical protein; Provisional

Probab=84.72  E-value=11  Score=30.57  Aligned_cols=65  Identities=14%  Similarity=0.078  Sum_probs=50.4

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhChhhHHHHHHHHHHhhccC
Q 026514           57 IEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVAASHPFITAGGAIGLGSFLLKR  128 (237)
Q Consensus        57 i~aa~s~~s~~~~~ss~h~~~~~d~l~~~~sey~~yEd~~f~kiKegv~~A~shP~~a~g~a~~aglllLr~  128 (237)
                      ++.+|.+.......+...+..+.+..+..+.-....++.+=.++=.+|       +|++|+++.+|+|+-||
T Consensus        43 ~~~lR~r~~~~L~~ar~~l~~~~~~~~~~~~a~~~~~~~V~~~Pw~sv-------giaagvG~llG~Ll~RR  107 (108)
T PRK10132         43 AEAARRKAQALLKETRARMHGRTRVQQAARDAVGCADTFVRERPWCSV-------GTAAAVGIFIGALLSLR  107 (108)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCcHHHH-------HHHHHHHHHHHHHHhcc
Confidence            588888888888888888888777666667767777777767774444       47899999999998764

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=81.92  E-value=16  Score=32.20  Aligned_cols=62  Identities=21%  Similarity=0.284  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 026514          146 SLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKI  207 (237)
Q Consensus       146 all~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~qIq~l~~s~yk~  207 (237)
                      ..+..++.++.+....+..+..++.+.++|+..+|.....=...|+..|..|+++--+.-+.
T Consensus       106 ~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~  167 (237)
T PF00261_consen  106 RRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKA  167 (237)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence            34556666666666666667777777777777777766666666666666666665544333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=80.56  E-value=30  Score=28.20  Aligned_cols=52  Identities=31%  Similarity=0.422  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 026514          153 TKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSA  204 (237)
Q Consensus       153 ~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~qIq~l~~s~  204 (237)
                      .++..+...++.+.+..++|.+.....|.++.--..+.++..++++.+....
T Consensus        59 ~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~  110 (151)
T PF11559_consen   59 DKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKL  110 (151)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444445555555555544445444444444444444444444433

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	237
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.5 bits (91), Expect = 7e-04
 Identities = 26/201 (12%), Positives = 67/201 (33%), Gaps = 35/201 (17%)

Query: 22  VFKSQSLED--GNPWIDNAV---------QQVMIYRKIVEESIDS----AIEASRSRLSQ 66
           +   + ++    +    +           +Q  + +K VEE +       +   ++   Q
Sbjct: 45  ILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ 104

Query: 67  TRLTASVHFQQTLDYLQDVKSEYAAYE---DAAVGKVKEGIHVAASHPFITAGGAIGLG- 122
             +  +  + +  D L +    +A Y         K+++ +        +   G +G G 
Sbjct: 105 PSMM-TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK 163

Query: 123 SFL-------LKRPRHF---LYYNTLRLFASEESLLSRADTKVKQLRQSIDR-LKAESEK 171
           +++        K        +++  L+   S E++L      +++L   ID    + S+ 
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL----EMLQKLLYQIDPNWTSRSDH 219

Query: 172 LEKVALVAEDELIRGRTKLRQ 192
              + L         R  L+ 
Sbjct: 220 SSNIKLRIHSIQAELRRLLKS 240

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	237
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	81.97
2b9c_A	147	Striated-muscle alpha tropomyosin; alpha-helix, co	80.17

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=81.97  E-value=20  Score=29.65  Aligned_cols=70  Identities=19%  Similarity=0.321  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 026514          146 SLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLK  215 (237)
Q Consensus       146 all~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~qIq~l~~s~yk~E~~A~gL~  215 (237)
                      ..+..|+.+.+.---+|.-+-+++.+|++........++.=.-.|.++-.+|.++..-.|.+++..+.|+
T Consensus        84 ~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~~~~  153 (155)
T 2efr_A           84 DKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVARLK  153 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence            4677888888888888888888888899998888888998999999999999999999999999988876

>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1

Probab=80.17  E-value=17  Score=29.62  Aligned_cols=62  Identities=13%  Similarity=0.240  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 026514          146 SLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKI  207 (237)
Q Consensus       146 all~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~qIq~l~~s~yk~  207 (237)
                      .+...|++++.+....+..+-.++.+.++|+-.||.....=-..|+..|..|++|--+--|.
T Consensus        66 ~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~eeka  127 (147)
T 2b9c_A           66 HIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVEEL  127 (147)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTH
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHH
Confidence            34568899999999999999999999999999999999999999999999999987554333

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00