Citrus Sinensis ID: 026528

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------
MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADADEDES
ccccEEEEEEEEEEEccccccccccEEEEEEEEccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccEEEccEEEEEEEEEEEEEcccccHHHHHHHHHHHHHHcccccEEEEccccccccccccccccccccccccccccEEEEEEEEccEEEEcccHHHHHccccEEEEEEEccccEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
ccccEEEEEEEEEEccccccccccEEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHccccccccEcHcHEEEEcccEEEEEEEEEEEEcccccHHHHHHHHHHHHHHHcccccEEEEccccEEEEEEEccccccccccccccccEEEEEEEEccEEEEcccHHHHHHcccEEEEEEccccEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
MGSTDVIASVKAelgrpsamqpdkgkvaifvdcsptaeptfegrggeELSAELSSALQHCLlggksgagagidLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALsntgipsvhvaaeaasdeqpevdisdeeflqfdtsgvpvITTLTKVGKHYIVDATLEEESQMSSAVSISINRqghicgmikrggvgldpsVILDMISVANFVSRQLMDKLDSEIaaadadedes
MGSTDVIASVKaelgrpsamqpdkgKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEiaaadadedes
MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLdseiaaadadedes
**************************VAIFVDC**********************ALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHV****************EEFLQFDTSGVPVITTLTKVGKHYIVDATLE*******AVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLM*****************
MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTA**************ELSSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSE***********
MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAA**********DISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEE********SISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEI**********
*GSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADA*****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADADEDES
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query237 2.2.26 [Sep-21-2011]
Q15024291 Exosome complex component yes no 0.919 0.749 0.370 1e-37
Q9D0M0291 Exosome complex exonuclea yes no 0.911 0.742 0.384 2e-37
Q54VM4324 Putative exosome complex yes no 0.936 0.685 0.313 1e-30
O26778271 Probable exosome complex yes no 0.898 0.785 0.333 4e-23
Q8TYC2267 Probable exosome complex yes no 0.818 0.726 0.314 2e-22
Q5JIR7272 Probable exosome complex yes no 0.755 0.658 0.347 3e-22
Q975G9275 Probable exosome complex yes no 0.890 0.767 0.337 6e-22
Q8U0M0277 Probable exosome complex yes no 0.784 0.671 0.319 9e-22
C5A2B8273 Probable exosome complex yes no 0.772 0.670 0.335 1e-21
O59224274 Probable exosome complex yes no 0.772 0.667 0.319 1e-20
>sp|Q15024|EXOS7_HUMAN Exosome complex component RRP42 OS=Homo sapiens GN=EXOSC7 PE=1 SV=3 Back     alignment and function desciption
 Score =  156 bits (394), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 84/227 (37%), Positives = 133/227 (58%), Gaps = 9/227 (3%)

Query: 1   MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
           +G TD++  VKAE+G P   +P++G +  FVDCS +A P FEGRGG++L  E+++ L   
Sbjct: 53  LGHTDILVGVKAEMGTPKLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYR- 111

Query: 61  LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
           +   KS     +DL +L +   + CW LY+D L++   GNL DA+  A+KAAL NT IP 
Sbjct: 112 IFNNKSS----VDLKTLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPR 167

Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSA 178
           V V  +    +  ++++SD+ +  ++     VP I TL K+G  ++VDATL+EE+   ++
Sbjct: 168 VRVLEDEEGSK--DIELSDDPYDCIRLSVENVPCIVTLCKIGYRHVVDATLQEEACSLAS 225

Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
           + +S+  +G +  M K G   LDP  I +M+     V + L   L S
Sbjct: 226 LLVSVTSKGVVTCMRKVGKGSLDPESIFEMMETGKRVGKVLHASLQS 272
Non-catalytic component of the RNA exosome complex which has 3'->5' exoribonuclease activity and participates in a multitude of cellular RNA processing and degradation events. In the nucleus, the RNA exosome complex is involved in proper maturation of stable RNA species such as rRNA, snRNA and snoRNA, in the elimination of RNA processing by-products and non-coding 'pervasive' transcripts, such as antisense RNA species and promoter-upstream transcripts (PROMPTs), and of mRNAs with processing defects, thereby limiting or excluding their export to the cytoplasm. The RNA exosome may be involved in Ig class switch recombination (CSR) and/or Ig variable region somatic hypermutation (SHM) by targeting AICDA deamination activity to transcribed dsDNA substrates. In the cytoplasm, the RNA exosome complex is involved in general mRNA turnover and specifically degrades inherently unstable mRNAs containing AU-rich elements (AREs) within their 3' untranslated regions, and in RNA surveillance pathways, preventing translation of aberrant mRNAs. It seems to be involved in degradation of histone mRNA. The catalytic inactive RNA exosome core complex of 9 subunits (Exo-9) is proposed to play a pivotal role in the binding and presentation of RNA for ribonucleolysis, and to serve as a scaffold for the association with catalytic subunits and accessory proteins or complexes.
Homo sapiens (taxid: 9606)
>sp|Q9D0M0|EXOS7_MOUSE Exosome complex exonuclease RRP42 OS=Mus musculus GN=Exosc7 PE=2 SV=2 Back     alignment and function description
>sp|Q54VM4|EXOS7_DICDI Putative exosome complex exonuclease RRP42 OS=Dictyostelium discoideum GN=exosc7 PE=3 SV=1 Back     alignment and function description
>sp|O26778|ECX2_METTH Probable exosome complex exonuclease 2 OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=MTH_682 PE=1 SV=1 Back     alignment and function description
>sp|Q8TYC2|ECX2_METKA Probable exosome complex exonuclease 2 OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=MK0380 PE=3 SV=1 Back     alignment and function description
>sp|Q5JIR7|ECX2_PYRKO Probable exosome complex exonuclease 2 OS=Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN=TK1633 PE=3 SV=1 Back     alignment and function description
>sp|Q975G9|ECX2_SULTO Probable exosome complex exonuclease 2 OS=Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=STK_04420 PE=3 SV=1 Back     alignment and function description
>sp|Q8U0M0|ECX2_PYRFU Probable exosome complex exonuclease 2 OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=PF1567 PE=3 SV=1 Back     alignment and function description
>sp|C5A2B8|ECX2_THEGJ Probable exosome complex exonuclease 2 OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=TGAM_2035 PE=3 SV=1 Back     alignment and function description
>sp|O59224|ECX2_PYRHO Probable exosome complex exonuclease 2 OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=PH1548 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query237
255578727287 exosome complex exonuclease rrp42, putat 1.0 0.825 0.843 1e-111
224131852287 predicted protein [Populus trichocarpa] 0.995 0.822 0.838 1e-110
449477436286 PREDICTED: exosome complex component RRP 0.995 0.825 0.826 1e-110
356498705286 PREDICTED: exosome complex component RRP 0.991 0.821 0.825 1e-109
297829330287 predicted protein [Arabidopsis lyrata su 1.0 0.825 0.814 1e-108
18398046286 3'-5'-exoribonuclease family protein [Ar 1.0 0.828 0.814 1e-107
356559534286 PREDICTED: exosome complex component RRP 0.945 0.783 0.839 1e-105
357518287286 Exosome complex exonuclease RRP42 [Medic 0.995 0.825 0.805 1e-105
6648187293 putative 3' exoribonuclease [Arabidopsis 1.0 0.808 0.790 1e-105
388522149286 unknown [Lotus japonicus] 0.991 0.821 0.804 1e-105
>gi|255578727|ref|XP_002530222.1| exosome complex exonuclease rrp42, putative [Ricinus communis] gi|223530269|gb|EEF32169.1| exosome complex exonuclease rrp42, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 200/237 (84%), Positives = 217/237 (91%)

Query: 1   MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
           +G+T+VIASVKAELGRP+A QPDKGKVAIFVDCSP AEPTFE RGGEELSAELS+ALQHC
Sbjct: 51  IGATEVIASVKAELGRPNAFQPDKGKVAIFVDCSPVAEPTFEARGGEELSAELSAALQHC 110

Query: 61  LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
           LLGGKSGAGAGIDLSSLVV EGK+CWDLYIDGLV+S DGNLLDALGAAIKAALSNTGIP 
Sbjct: 111 LLGGKSGAGAGIDLSSLVVAEGKICWDLYIDGLVVSFDGNLLDALGAAIKAALSNTGIPK 170

Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
           VHVAA    DEQPEVDISDEEFLQFDTSGVPVI TLTKVG+HYIVDAT EEES MSSAVS
Sbjct: 171 VHVAAGGLGDEQPEVDISDEEFLQFDTSGVPVIVTLTKVGRHYIVDATSEEESYMSSAVS 230

Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADADEDES 237
           +SINR+GHICG+ KRGG G+DPSVI D+ISVA  +S QL++KLDSEIAAA+A EDES
Sbjct: 231 VSINRKGHICGLTKRGGAGIDPSVISDIISVAQHISEQLINKLDSEIAAAEAGEDES 287

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224131852|ref|XP_002321194.1| predicted protein [Populus trichocarpa] gi|222861967|gb|EEE99509.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449477436|ref|XP_004155022.1| PREDICTED: exosome complex component RRP42-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356498705|ref|XP_003518190.1| PREDICTED: exosome complex component RRP42-like [Glycine max] Back     alignment and taxonomy information
>gi|297829330|ref|XP_002882547.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297328387|gb|EFH58806.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18398046|ref|NP_566318.1| 3'-5'-exoribonuclease family protein [Arabidopsis thaliana] gi|30680427|ref|NP_850537.1| 3'-5'-exoribonuclease family protein [Arabidopsis thaliana] gi|11762184|gb|AAG40370.1|AF325018_1 AT3g07750 [Arabidopsis thaliana] gi|26453010|dbj|BAC43581.1| putative 3' exoribonuclease [Arabidopsis thaliana] gi|56744222|gb|AAW28551.1| At3g07750 [Arabidopsis thaliana] gi|332641077|gb|AEE74598.1| 3'-5'-exoribonuclease family protein [Arabidopsis thaliana] gi|332641078|gb|AEE74599.1| 3'-5'-exoribonuclease family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356559534|ref|XP_003548054.1| PREDICTED: exosome complex component RRP42-like [Glycine max] Back     alignment and taxonomy information
>gi|357518287|ref|XP_003629432.1| Exosome complex exonuclease RRP42 [Medicago truncatula] gi|355523454|gb|AET03908.1| Exosome complex exonuclease RRP42 [Medicago truncatula] Back     alignment and taxonomy information
>gi|6648187|gb|AAF21185.1|AC013483_9 putative 3' exoribonuclease [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|388522149|gb|AFK49136.1| unknown [Lotus japonicus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query237
TAIR|locus:2077522286 AT3G07750 "AT3G07750" [Arabido 0.940 0.779 0.816 4.8e-94
ZFIN|ZDB-GENE-050417-47291 exosc7 "exosome component 7" [ 0.894 0.728 0.416 8.4e-42
UNIPROTKB|Q15024291 EXOSC7 "Exosome complex compon 0.894 0.728 0.371 1e-36
MGI|MGI:1913696291 Exosc7 "exosome component 7" [ 0.894 0.728 0.375 1.7e-36
RGD|1309758257 Exosc7 "exosome component 7" [ 0.894 0.824 0.375 1.7e-36
DICTYBASE|DDB_G0280251324 DDB_G0280251 "putative exosome 0.582 0.425 0.398 7.1e-34
FB|FBgn0034065296 Rrp42 "Rrp42" [Drosophila mela 0.907 0.726 0.337 6.4e-28
UNIPROTKB|Q2KHU3276 EXOSC8 "Exosome complex compon 0.894 0.768 0.328 4.9e-21
TAIR|locus:2089215307 RRP45a "AT3G12990" [Arabidopsi 0.856 0.661 0.315 6.3e-21
UNIPROTKB|Q96B26276 EXOSC8 "Exosome complex compon 0.894 0.768 0.333 1.7e-20
TAIR|locus:2077522 AT3G07750 "AT3G07750" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 936 (334.5 bits), Expect = 4.8e-94, P = 4.8e-94
 Identities = 182/223 (81%), Positives = 201/223 (90%)

Query:     1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
             +G TDVIASVKAE+GRPS++QPDKGKVA+F+DCSPTAEPTF GRGGEELS+EL+ ALQ C
Sbjct:    50 IGGTDVIASVKAEIGRPSSLQPDKGKVAVFIDCSPTAEPTFGGRGGEELSSELALALQRC 109

Query:    61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
             LLGGKSGAGAGI+LSSL++ EGKVCWDLYIDGLVISSDGNLLDALGAAIKAAL+NT IP 
Sbjct:   110 LLGGKSGAGAGINLSSLLIKEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALTNTAIPK 169

Query:   121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
             V+V+AE A DEQPE+DISDEE+LQFDTS VPVI TLTKVG HYIVDAT EEESQMSSAVS
Sbjct:   170 VNVSAEVADDEQPEIDISDEEYLQFDTSSVPVIVTLTKVGTHYIVDATAEEESQMSSAVS 229

Query:   181 ISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKL 223
             IS+NR GHICG+ KR G GLDPSVILDMISVA  V+  LM KL
Sbjct:   230 ISVNRTGHICGLTKRSGSGLDPSVILDMISVAKHVTETLMSKL 272
GO:0000175 "3'-5'-exoribonuclease activity" evidence=ISS
GO:0003723 "RNA binding" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0006396 "RNA processing" evidence=IEA;ISS
GO:0000478 "endonucleolytic cleavage involved in rRNA processing" evidence=RCA
GO:0001510 "RNA methylation" evidence=RCA
GO:0006626 "protein targeting to mitochondrion" evidence=RCA
ZFIN|ZDB-GENE-050417-47 exosc7 "exosome component 7" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q15024 EXOSC7 "Exosome complex component RRP42" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1913696 Exosc7 "exosome component 7" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1309758 Exosc7 "exosome component 7" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0280251 DDB_G0280251 "putative exosome complex exonuclease" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
FB|FBgn0034065 Rrp42 "Rrp42" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q2KHU3 EXOSC8 "Exosome complex component RRP43" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
TAIR|locus:2089215 RRP45a "AT3G12990" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q96B26 EXOSC8 "Exosome complex component RRP43" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pm.C_LG_XIV0472
hypothetical protein (288 aa)
(Populus trichocarpa)
Predicted Functional Partners:
estExt_fgenesh4_pm.C_LG_XIV0164
hypothetical protein (241 aa)
• ••••••0.942
eugene3.00031704
hypothetical protein (320 aa)
• ••••• 0.916
estExt_Genewise1_v1.C_LG_XII0359
SubName- Full=Putative uncharacterized protein; (242 aa)
• ••••• 0.885
grail3.0016041401
SubName- Full=Putative uncharacterized protein; (199 aa)
  ••••• 0.882
estExt_fgenesh4_pg.C_LG_III0702
hypothetical protein (935 aa)
    ••• 0.672
grail3.0001134203
SubName- Full=Putative uncharacterized protein; (257 aa)
• ••••••0.624
gw1.XVIII.1197.1
hypothetical protein (232 aa)
• ••••• 0.623
estExt_fgenesh4_pm.C_660123
hypothetical protein (263 aa)
• ••••••0.597
fgenesh4_pg.C_LG_VI001658
hypothetical protein (243 aa)
  ••••• 0.572

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query237
cd11367272 cd11367, RNase_PH_RRP42, RRP42 subunit of eukaryot 1e-91
PRK04282271 PRK04282, PRK04282, exosome complex RNA-binding pr 3e-42
cd11365256 cd11365, RNase_PH_archRRP42, RRP42 subunit of arch 7e-41
COG2123272 COG2123, COG2123, RNase PH-related exoribonuclease 1e-40
cd11369261 cd11369, RNase_PH_RRP43, RRP43 subunit of eukaryot 2e-36
cd11368259 cd11368, RNase_PH_RRP45, RRP45 subunit of eukaryot 5e-36
cd11358218 cd11358, RNase_PH, RNase PH-like 3'-5' exoribonucl 1e-25
pfam01138129 pfam01138, RNase_PH, 3' exoribonuclease family, do 2e-20
pfam0372568 pfam03725, RNase_PH_C, 3' exoribonuclease family, 5e-07
>gnl|CDD|206772 cd11367, RNase_PH_RRP42, RRP42 subunit of eukaryotic exosome Back     alignment and domain information 
 Score =  270 bits (693), Expect = 1e-91
 Identities = 108/228 (47%), Positives = 147/228 (64%), Gaps = 5/228 (2%)

Query: 2   GSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCL 61
           G+TDV+  VKAE+G P    P+KG++  FVDCSP A P FEGRGGEEL+ ELSSAL+  L
Sbjct: 50  GNTDVLVGVKAEVGSPDPETPNKGRLEFFVDCSPNASPEFEGRGGEELATELSSALERAL 109

Query: 62  LGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSV 121
             G +     IDLS L +V GK CW LY+D LV+ S GNLLDA+  A+KAAL NT IP V
Sbjct: 110 KSGSA-----IDLSKLCIVPGKQCWVLYVDVLVLESGGNLLDAISIAVKAALFNTRIPKV 164

Query: 122 HVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVSI 181
            V+ +    ++ E+     +  + D S VP+I TL+K+G  +IVDAT EEE+  S+ + +
Sbjct: 165 EVSEDDEGTKEIELSDDPYDVKRLDVSNVPLIVTLSKIGNRHIVDATAEEEACSSARLLV 224

Query: 182 SINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAA 229
           ++N +G ICG+ K GG  L+P  I++MI  A  V ++L   LD  +  
Sbjct: 225 AVNAKGRICGVQKSGGGSLEPESIIEMIETAKEVGKKLNAALDKALKE 272

The RRP42 subunit of eukaryotic exosome is a member of the RNase_PH family, named after the bacterial Ribonuclease PH, a 3'-5' exoribonuclease. Structurally all members of this family form hexameric rings (trimers of Rrp41-Rrp45, Rrp46-Rrp43, and Mtr3-Rrp42 dimers). The eukaryotic exosome core is composed of six individually encoded RNase PH-like subunits and three additional proteins (Rrp4, Csl4 and Rrp40) that form a stable cap and contain RNA-binding domains. The RNase PH-like subunits are no longer phosphorolytic enzymes, the exosome directly associates with Rrp44 and Rrp6, hydrolytic exoribonucleases related to bacterial RNase II/R and RNase D. The exosome plays an important role in RNA turnover. It plays a crucial role in the maturation of stable RNA species such as rRNA, snRNA and snoRNA, quality control of mRNA, and the degradation of RNA processing by-products and non-coding transcripts. Length = 272
>gnl|CDD|235268 PRK04282, PRK04282, exosome complex RNA-binding protein Rrp42; Provisional Back     alignment and domain information
>gnl|CDD|206770 cd11365, RNase_PH_archRRP42, RRP42 subunit of archaeal exosome Back     alignment and domain information
>gnl|CDD|225034 COG2123, COG2123, RNase PH-related exoribonuclease [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|206774 cd11369, RNase_PH_RRP43, RRP43 subunit of eukaryotic exosome Back     alignment and domain information
>gnl|CDD|206773 cd11368, RNase_PH_RRP45, RRP45 subunit of eukaryotic exosome Back     alignment and domain information
>gnl|CDD|206766 cd11358, RNase_PH, RNase PH-like 3'-5' exoribonucleases Back     alignment and domain information
>gnl|CDD|216323 pfam01138, RNase_PH, 3' exoribonuclease family, domain 1 Back     alignment and domain information
>gnl|CDD|217696 pfam03725, RNase_PH_C, 3' exoribonuclease family, domain 2 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 237
COG2123272 RNase PH-related exoribonuclease [Translation, rib 100.0
KOG1614291 consensus Exosomal 3'-5' exoribonuclease complex, 100.0
PRK04282271 exosome complex RNA-binding protein Rrp42; Provisi 100.0
KOG1613298 consensus Exosomal 3'-5' exoribonuclease complex, 100.0
KOG1612288 consensus Exosomal 3'-5' exoribonuclease complex, 100.0
PRK00173238 rph ribonuclease PH; Reviewed 100.0
TIGR01966236 RNasePH ribonuclease PH. This bacterial enzyme, ri 100.0
PRK03983244 exosome complex exonuclease Rrp41; Provisional 100.0
TIGR02065230 ECX1 archaeal exosome-like complex exonuclease 1. 100.0
TIGR03591 684 polynuc_phos polyribonucleotide nucleotidyltransfe 99.94
PRK11824 693 polynucleotide phosphorylase/polyadenylase; Provis 99.94
COG0689230 Rph RNase PH [Translation, ribosomal structure and 99.94
PRK11824 693 polynucleotide phosphorylase/polyadenylase; Provis 99.92
TIGR03591 684 polynuc_phos polyribonucleotide nucleotidyltransfe 99.92
KOG1068245 consensus Exosomal 3'-5' exoribonuclease complex, 99.91
PF01138132 RNase_PH: 3' exoribonuclease family, domain 1 This 99.87
KOG1069217 consensus Exosomal 3'-5' exoribonuclease complex, 99.85
PLN00207 891 polyribonucleotide nucleotidyltransferase; Provisi 99.81
TIGR02696 719 pppGpp_PNP guanosine pentaphosphate synthetase I/p 99.76
PLN00207 891 polyribonucleotide nucleotidyltransferase; Provisi 99.68
PF0372568 RNase_PH_C: 3' exoribonuclease family, domain 2 Th 99.54
TIGR02696 719 pppGpp_PNP guanosine pentaphosphate synthetase I/p 99.23
COG1185 692 Pnp Polyribonucleotide nucleotidyltransferase (pol 98.75
KOG1067 760 consensus Predicted RNA-binding polyribonucleotide 98.36
KOG1067 760 consensus Predicted RNA-binding polyribonucleotide 98.07
COG1185 692 Pnp Polyribonucleotide nucleotidyltransferase (pol 96.34
>COG2123 RNase PH-related exoribonuclease [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=1.9e-52  Score=350.08  Aligned_cols=218  Identities=33%  Similarity=0.508  Sum_probs=205.0

Q ss_pred             CCCcEEEEEEEEEeeCCCCCCCCCceEEEEEeeCCCCCCCcCCCCCchhHHHHHHHHHHHHhcCCCCCCCCCCCCceeEE
Q 026528            1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLVVV   80 (237)
Q Consensus         1 lG~T~Vi~~V~~ei~~p~~~~p~~G~i~~~v~~~~~~~~~~~~~~~~~~~~~ls~~L~~~l~~~~~~~~~~id~e~L~I~   80 (237)
                      +|+|+|+|+||.++++|++++|++|.+.+|+|++|.++|.|+.+++++.+.+++|.++|.++.++.     +|+++|||.
T Consensus        54 lG~Tqvv~gvK~eig~Pf~DtP~eG~~~~n~El~Plas~~fE~Gppde~aielsrvvdr~lr~s~a-----iDlekL~I~  128 (272)
T COG2123          54 LGNTQVVVGVKAEIGEPFPDTPNEGVLVVNVELSPLASPSFEPGPPDELAIELSRVVDRGLRESKA-----IDLEKLCIE  128 (272)
T ss_pred             ecCeEEEEEEEcccCCCCCCCCCCceEEeeeeeeccccccccCCCCchhHHHHHHHHHHHHHhccC-----cchhheeEe
Confidence            699999999999999999999999999999999999999999999999999999999999999976     999999999


Q ss_pred             cCeEEEEEEEEEEEEcCCCCHHHHHHHHHHHHHhcCCCceEEEccCcCCCCCceEecCCccccccccCCCceEEEEEEeC
Q 026528           81 EGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVG  160 (237)
Q Consensus        81 ~g~~~w~l~idv~VL~~dGnl~da~~~A~~~AL~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Pi~vT~~~~~  160 (237)
                      +|+++|.+++|++||++|||++||+++|+++||++|++|++....++     ......+.++.||.+.+.|+++||+++|
T Consensus       129 ~g~kvwvv~vDv~vld~DGnl~Da~~lA~~aAL~~t~vP~~~~~~~~-----~~v~~~~~~~~pl~~~~~pi~vt~a~ig  203 (272)
T COG2123         129 EGKKVWVVFVDVHVLDYDGNLIDAASLAAVAALLNTRVPKAVEVGDG-----EIVIEVEEEPVPLPVSNPPISVTFAKIG  203 (272)
T ss_pred             cCCEEEEEEEEEEEEcCCCCHHHHHHHHHHHHHHhcCCCceeecCCc-----ceeecccCCCcccccCCCceEEEEEEEC
Confidence            99999999999999999999999999999999999999987776543     2223333467789999999999999999


Q ss_pred             cEEEEcCChHHHhcCCCeEEEEEcCCCcEEEEEecCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026528          161 KHYIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIA  228 (237)
Q Consensus       161 ~~~l~Dpt~~EE~~~~~~l~i~~~~~g~i~~i~~~G~~~i~~~~l~~~i~~a~~~~~~l~~~l~~~l~  228 (237)
                      +.+++|||.+||..++++++|.++++|+|++++|.|++.++.+.+.+|++.|.+.+.++.+.+.++|+
T Consensus       204 ~~lvvDPsleEe~v~d~~ltit~~~~~~Iv~iqK~g~~~~~~~~~~~~~~~A~~~~~kl~~~~~~~L~  271 (272)
T COG2123         204 NVLVVDPSLEEELVADGRLTITVNEDGEIVAIQKVGGGSITESDLEKALKTALSKAEKLREALKEALK  271 (272)
T ss_pred             CEEEeCCCcchhhhcCceEEEEECCCCcEEEEEEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999885

>KOG1614 consensus Exosomal 3'-5' exoribonuclease complex, subunit Rrp45 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK04282 exosome complex RNA-binding protein Rrp42; Provisional Back     alignment and domain information
>KOG1613 consensus Exosomal 3'-5' exoribonuclease complex, subunit Rrp43 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1612 consensus Exosomal 3'-5' exoribonuclease complex, subunit Rrp42 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK00173 rph ribonuclease PH; Reviewed Back     alignment and domain information
>TIGR01966 RNasePH ribonuclease PH Back     alignment and domain information
>PRK03983 exosome complex exonuclease Rrp41; Provisional Back     alignment and domain information
>TIGR02065 ECX1 archaeal exosome-like complex exonuclease 1 Back     alignment and domain information
>TIGR03591 polynuc_phos polyribonucleotide nucleotidyltransferase Back     alignment and domain information
>PRK11824 polynucleotide phosphorylase/polyadenylase; Provisional Back     alignment and domain information
>COG0689 Rph RNase PH [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK11824 polynucleotide phosphorylase/polyadenylase; Provisional Back     alignment and domain information
>TIGR03591 polynuc_phos polyribonucleotide nucleotidyltransferase Back     alignment and domain information
>KOG1068 consensus Exosomal 3'-5' exoribonuclease complex, subunit Rrp41 and related exoribonucleases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF01138 RNase_PH: 3' exoribonuclease family, domain 1 This Prosite family only includes Ribonuclease PH; InterPro: IPR001247 The PH (phosphorolytic) domain is responsible for 3'-5' exoribonuclease activity, although in some proteins this domain has lost its catalytic function Back     alignment and domain information
>KOG1069 consensus Exosomal 3'-5' exoribonuclease complex, subunit Rrp46 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN00207 polyribonucleotide nucleotidyltransferase; Provisional Back     alignment and domain information
>TIGR02696 pppGpp_PNP guanosine pentaphosphate synthetase I/polynucleotide phosphorylase Back     alignment and domain information
>PLN00207 polyribonucleotide nucleotidyltransferase; Provisional Back     alignment and domain information
>PF03725 RNase_PH_C: 3' exoribonuclease family, domain 2 This Prosite family only includes Ribonuclease PH; InterPro: IPR015847 The PH (phosphorolytic) domain is responsible for 3'-5' exoribonuclease activity, although in some proteins this domain has lost its catalytic function Back     alignment and domain information
>TIGR02696 pppGpp_PNP guanosine pentaphosphate synthetase I/polynucleotide phosphorylase Back     alignment and domain information
>COG1185 Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1067 consensus Predicted RNA-binding polyribonucleotide nucleotidyltransferase [General function prediction only] Back     alignment and domain information
>KOG1067 consensus Predicted RNA-binding polyribonucleotide nucleotidyltransferase [General function prediction only] Back     alignment and domain information
>COG1185 Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query237
2nn6_E305 Structure Of The Human Rna Exosome Composed Of Rrp4 4e-38
2wnr_A271 The Structure Of Methanothermobacter Thermautotroph 1e-23
2nn6_C278 Structure Of The Human Rna Exosome Composed Of Rrp4 5e-20
2pnz_B277 Crystal Structure Of The P. Abyssi Exosome Rnase Ph 3e-18
3l7z_A271 Crystal Structure Of The S. Solfataricus Archaeal E 3e-18
2br2_A275 Rnase Ph Core Of The Archaeal Exosome Length = 275 4e-18
2je6_A277 Structure Of A 9-Subunit Archaeal Exosome Length = 4e-18
3m85_G259 Archaeoglobus Fulgidus Exosome Y70a With Rna Bound 6e-18
2ba0_I259 Archaeal Exosome Core Length = 259 1e-17
2nn6_A358 Structure Of The Human Rna Exosome Composed Of Rrp4 2e-12
2wp8_A305 Yeast Rrp44 Nuclease Length = 305 8e-09
4ifd_A304 Crystal Structure Of An 11-subunit Eukaryotic Exoso 8e-09
>pdb|2NN6|E Chain E, Structure Of The Human Rna Exosome Composed Of Rrp41, Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40 Length = 305 Back     alignment and structure 
Iteration: 1

 Score =  154 bits (389), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 82/221 (37%), Positives = 131/221 (59%), Gaps = 9/221 (4%)
Query: 1   MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
           +G TD++  VKAE+G P   +P++G +  FVDCS +A P FEGRGG++L  E+++ L   
Sbjct: 67  LGHTDILVGVKAEMGTPKLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYR- 125
Query: 61  LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
           +   KS     +DL +L +   + CW LY+D L++   GNL DA+  A+KAAL NT IP 
Sbjct: 126 IFNNKSS----VDLKTLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPR 181
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSA 178
           V V  +    +  ++++SD+ +  ++     VP I TL K+G  ++VDATL+EE+   ++
Sbjct: 182 VRVLEDEEGSK--DIELSDDPYDCIRLSVENVPCIVTLCKIGYRHVVDATLQEEACSLAS 239
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQL 219
           + +S+  +G +  M K G   LDP  I +M+     V + L
Sbjct: 240 LLVSVTSKGVVTCMRKVGKGSLDPESIFEMMETGKRVGKVL 280
>pdb|2WNR|A Chain A, The Structure Of Methanothermobacter Thermautotrophicus Exosome Core Assembly Length = 271 Back     alignment and structure
>pdb|2NN6|C Chain C, Structure Of The Human Rna Exosome Composed Of Rrp41, Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40 Length = 278 Back     alignment and structure
>pdb|2PNZ|B Chain B, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring Complexed With Udp And Gmp Length = 277 Back     alignment and structure
>pdb|3L7Z|A Chain A, Crystal Structure Of The S. Solfataricus Archaeal Exosome Length = 271 Back     alignment and structure
>pdb|2BR2|A Chain A, Rnase Ph Core Of The Archaeal Exosome Length = 275 Back     alignment and structure
>pdb|2JE6|A Chain A, Structure Of A 9-Subunit Archaeal Exosome Length = 277 Back     alignment and structure
>pdb|3M85|G Chain G, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The Active Site Length = 259 Back     alignment and structure
>pdb|2BA0|I Chain I, Archaeal Exosome Core Length = 259 Back     alignment and structure
>pdb|2NN6|A Chain A, Structure Of The Human Rna Exosome Composed Of Rrp41, Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40 Length = 358 Back     alignment and structure
>pdb|2WP8|A Chain A, Yeast Rrp44 Nuclease Length = 305 Back     alignment and structure
>pdb|4IFD|A Chain A, Crystal Structure Of An 11-subunit Eukaryotic Exosome Complex Bound To Rna Length = 304 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query237
2wnr_A271 Probable exosome complex exonuclease 2; phosphate 3e-64
2je6_A277 RRP42, exosome complex exonuclease 2; nuclease, hy 2e-62
3m7n_G259 Probable exosome complex exonuclease 2; exosome, R 2e-61
2po1_B277 Probable exosome complex exonuclease 2; RNAse PH, 3e-61
2nn6_E305 Exosome complex exonuclease RRP42; RNA, exosome, P 5e-61
2nn6_A358 Polymyositis/scleroderma autoantigen 1; RNA, exoso 1e-59
2nn6_C278 Exosome complex exonuclease RRP43; RNA, exosome, P 2e-53
2wp8_A305 Exosome complex component RRP45; nucleus, hydrolas 8e-50
3b4t_A262 Ribonuclease PH; RNAse, tRNA nucleotidyltransferas 2e-05
>2wnr_A Probable exosome complex exonuclease 2; phosphate binding, 3'-5' exoribonuclease, hydrolase; 2.65A {Methanothermobacter thermautotrophicusorganism_taxid} Length = 271 Back     alignment and structure
 Score =  199 bits (509), Expect = 3e-64
 Identities = 73/228 (32%), Positives = 113/228 (49%), Gaps = 12/228 (5%)

Query: 1   MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
           +G+T +I  VK ++G P    P+ G +    +  P A PTFE    +E S ELS  +  C
Sbjct: 55  LGNTQIIVGVKPQIGEPFPDTPEMGVILTNSELLPMASPTFEPGPPDERSVELSRVVDRC 114

Query: 61  LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
           +   +      IDL  L ++EG   W L++D  +I  DGNL DA   A  AAL +T IP+
Sbjct: 115 IRESRM-----IDLEKLCIIEGSKVWMLFLDLHIIDYDGNLFDAAVLATVAALLDTRIPA 169

Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
             V          EV I+ E+      +   ++ T  K+G   ++D +LEEE  +++ +S
Sbjct: 170 AEVEDG-------EVVINREKMQPLPVNRKALMCTFAKIGNEIVLDPSLEEEDILTARIS 222

Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIA 228
           I +  +G IC M K G   L    +L  +S+A     QL++ LD  + 
Sbjct: 223 IGVTEEGSICAMQKGGEGPLTRDDVLKAVSIAVEKVPQLIEYLDKSMT 270
>2je6_A RRP42, exosome complex exonuclease 2; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: d.14.1.4 d.101.1.1 PDB: 2jea_A* 2jeb_A* 2br2_A 2c37_A* 2c38_A* 2c39_A* 3l7z_A Length = 277 Back     alignment and structure
>3m7n_G Probable exosome complex exonuclease 2; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_H 2ba0_I 3m85_G Length = 259 Back     alignment and structure
>2po1_B Probable exosome complex exonuclease 2; RNAse PH, hydrolase/hydrolase/RNA complex; 1.94A {Pyrococcus abyssi} PDB: 2po0_B* 2pnz_B 2po2_B* Length = 277 Back     alignment and structure
>2nn6_E Exosome complex exonuclease RRP42; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1 Length = 305 Back     alignment and structure
>2nn6_A Polymyositis/scleroderma autoantigen 1; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1 Length = 358 Back     alignment and structure
>2nn6_C Exosome complex exonuclease RRP43; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1 Length = 278 Back     alignment and structure
>2wp8_A Exosome complex component RRP45; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae} Length = 305 Back     alignment and structure
>3b4t_A Ribonuclease PH; RNAse, tRNA nucleotidyltransferase, RPHA, STRU genomics, TBSGC; 2.10A {Mycobacterium tuberculosis} Length = 262 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query237
2po1_B277 Probable exosome complex exonuclease 2; RNAse PH, 100.0
2nn6_E305 Exosome complex exonuclease RRP42; RNA, exosome, P 100.0
2wp8_A305 Exosome complex component RRP45; nucleus, hydrolas 100.0
2wnr_A271 Probable exosome complex exonuclease 2; phosphate 100.0
2je6_A277 RRP42, exosome complex exonuclease 2; nuclease, hy 100.0
3m7n_G259 Probable exosome complex exonuclease 2; exosome, R 100.0
2nn6_C278 Exosome complex exonuclease RRP43; RNA, exosome, P 100.0
2nn6_A358 Polymyositis/scleroderma autoantigen 1; RNA, exoso 100.0
2wnr_B240 Probable exosome complex exonuclease 1; phosphate 100.0
2nn6_B249 Exosome complex exonuclease RRP41; RNA, exosome, P 100.0
2po1_A249 Probable exosome complex exonuclease 1; RNAse PH, 100.0
3b4t_A262 Ribonuclease PH; RNAse, tRNA nucleotidyltransferas 100.0
1r6l_A239 Ribonuclease PH; beta-alpha-beta-alpha fold, hexam 100.0
3dd6_A255 Ribonuclease PH; exoribonuclease, tRNA maturation, 100.0
1udn_A255 Ribonuclease PH, RNAse PH; transferase, riken stru 100.0
2je6_B250 RRP41, exosome complex exonuclease 1; nuclease, hy 100.0
1oys_A245 Ribonuclease PH; transferase, tRNA processing; 2.4 100.0
3m7n_D258 Probable exosome complex exonuclease 1; exosome, R 100.0
2wp8_B246 Exosome complex component SKI6; nucleus, hydrolase 100.0
2nn6_D237 Exosome complex exonuclease RRP46; RNA, exosome, P 100.0
2nn6_F272 MTR3, exosome component 6; RNA, exosome, PM/SCL, p 100.0
3hkm_A246 OS03G0854200 protein; RNAse PH domain, phosphoryla 99.97
3cdi_A 723 Polynucleotide phosphorylase; mRNA turnover, RNAse 99.95
3krn_A222 Protein C14A4.5, confirmed by transcript evidence; 99.95
3u1k_A630 Polyribonucleotide nucleotidyltransferase 1, MITO; 99.95
1e3p_A 757 Guanosine pentaphosphate synthetase; polyribonucle 99.94
3gme_A549 Polyribonucleotide nucleotidyltransferase; protein 99.94
4aid_A 726 Polyribonucleotide nucleotidyltransferase; transfe 99.93
3u1k_A 630 Polyribonucleotide nucleotidyltransferase 1, MITO; 99.9
3cdi_A 723 Polynucleotide phosphorylase; mRNA turnover, RNAse 99.87
4aid_A 726 Polyribonucleotide nucleotidyltransferase; transfe 99.83
3gme_A 549 Polyribonucleotide nucleotidyltransferase; protein 99.8
1e3p_A 757 Guanosine pentaphosphate synthetase; polyribonucle 99.73
>2po1_B Probable exosome complex exonuclease 2; RNAse PH, hydrolase/hydrolase/RNA complex; 1.94A {Pyrococcus abyssi} PDB: 2po0_B* 2pnz_B 2po2_B* Back     alignment and structure
Probab=100.00  E-value=3.2e-46  Score=322.18  Aligned_cols=219  Identities=29%  Similarity=0.462  Sum_probs=203.7

Q ss_pred             CCCcEEEEEEEEEeeCCCCCCCCCceEEEEEeeCCCCCCCcCCCCCchhHHHHHHHHHHHHhcCCCCCCCCCCCCceeEE
Q 026528            1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLVVV   80 (237)
Q Consensus         1 lG~T~Vi~~V~~ei~~p~~~~p~~G~i~~~v~~~~~~~~~~~~~~~~~~~~~ls~~L~~~l~~~~~~~~~~id~e~L~I~   80 (237)
                      +|+|+|+|+|++++.+|..++|++|++.++++++|+++|.|+.+++++.+++++++|+++|+++++     +|+++|||.
T Consensus        57 ~G~T~Vl~~V~~~~~~p~~~~~~~g~l~~~~~~~p~a~~~~~~g~~~~~~~~l~~li~r~l~~s~~-----idl~~L~i~  131 (277)
T 2po1_B           57 LGSTQVLVGIKTSLGEPFPDTPNMGVMTTNVELVPLASPTFEPGPPDERAIELARVIDRGIRESKA-----LNLEKMVIV  131 (277)
T ss_dssp             ETTEEEEEEEEEEEECCCTTCTTSCEEEEEEEECGGGCTTCCSSSCCHHHHHHHHHHHHHHHTTTS-----BCGGGGEEE
T ss_pred             ECCeEEEEEEEecccCCCCCCCCceEEEEEEEeCCCccccccCCCCChHHHHHHHHHHHHHhhccc-----ccHHHcccc
Confidence            599999999999998898889999999999999999999988778889999999999999999876     999999999


Q ss_pred             cCeEEEEEEEEEEEEcCCCCHHHHHHHHHHHHHhcCCCceEEEccCcCCCCCceEecCCccccccccCCCceEEEEEEeC
Q 026528           81 EGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVG  160 (237)
Q Consensus        81 ~g~~~w~l~idv~VL~~dGnl~da~~~A~~~AL~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Pi~vT~~~~~  160 (237)
                      ||+++|.|+||++||++|||++||+++|+++||+|+++|.+.+.+++    ...+  +..+..++.++++|+++|||+++
T Consensus       132 pg~~~w~i~id~~VL~~dG~~~~a~i~aa~~AL~da~~p~~~~~~~~----~~~~--~~~~~~~ipl~~~~~avs~g~~~  205 (277)
T 2po1_B          132 PGKIVRVVFIDVHVLDHDGNLMDAIGIAAIAALLNARVPKVRYNEET----GEVE--TLDETEPLPVEKIPVPVTFAKIG  205 (277)
T ss_dssp             TTTEEEEEEEEEEEEECSSCHHHHHHHHHHHHHHHCEEEEEEECTTT----CCEE--EEEEEEECCBCCCCEEEEEEEET
T ss_pred             CCcEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHhcCCCcEEEeCCC----ceee--cccccccccccCceEEEEEEEEC
Confidence            99999999999999999999999999999999999999999997643    1223  23556778889999999999999


Q ss_pred             cEEEEcCChHHHhcCCCeEEEEEcCCCcEEEEEecCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026528          161 KHYIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAA  230 (237)
Q Consensus       161 ~~~l~Dpt~~EE~~~~~~l~i~~~~~g~i~~i~~~G~~~i~~~~l~~~i~~a~~~~~~l~~~l~~~l~~~  230 (237)
                      +.+++|||.+||..+++.++|+++++|+|+.+++.|+++++.++|.+|+++|.+++++++++++++|++.
T Consensus       206 ~~~l~Dp~~~Ee~~~~~~~~v~~~~~g~i~~lq~~g~~~~~~~~l~~~l~~A~~~~~~l~~~~~~~l~~~  275 (277)
T 2po1_B          206 NILVVDPSLDEELVMDGKITITTDETGHISAVQKSEGGAFKLEEVMYAVETAFKKAEEIRKLILEAVEKA  275 (277)
T ss_dssp             TEEEESCCHHHHHHCSEEEEEEECTTSCEEEEEEESSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEeCCCHHHHhhCCCcEEEEEcCCCCEEEEEccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            9999999999999999999999999999999999998889999999999999999999999999999874
>2nn6_E Exosome complex exonuclease RRP42; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1 Back     alignment and structure
>2wp8_A Exosome complex component RRP45; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae} Back     alignment and structure
>2wnr_A Probable exosome complex exonuclease 2; phosphate binding, 3'-5' exoribonuclease, hydrolase; 2.65A {Methanothermobacter thermautotrophicusorganism_taxid} Back     alignment and structure
>2je6_A RRP42, exosome complex exonuclease 2; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: d.14.1.4 d.101.1.1 PDB: 2jea_A* 2jeb_A* 2br2_A 2c37_A* 2c38_A* 2c39_A* 3l7z_A Back     alignment and structure
>3m7n_G Probable exosome complex exonuclease 2; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_H 2ba0_I 3m85_G Back     alignment and structure
>2nn6_C Exosome complex exonuclease RRP43; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1 Back     alignment and structure
>2nn6_A Polymyositis/scleroderma autoantigen 1; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1 Back     alignment and structure
>2wnr_B Probable exosome complex exonuclease 1; phosphate binding, 3'-5' exoribonuclease, hydrolase; 2.65A {Methanothermobacter thermautotrophicusorganism_taxid} Back     alignment and structure
>2nn6_B Exosome complex exonuclease RRP41; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1 Back     alignment and structure
>2po1_A Probable exosome complex exonuclease 1; RNAse PH, hydrolase/hydrolase/RNA complex; 1.94A {Pyrococcus abyssi} PDB: 2po0_A* 2pnz_A 2po2_A* Back     alignment and structure
>3b4t_A Ribonuclease PH; RNAse, tRNA nucleotidyltransferase, RPHA, STRU genomics, TBSGC; 2.10A {Mycobacterium tuberculosis} Back     alignment and structure
>1r6l_A Ribonuclease PH; beta-alpha-beta-alpha fold, hexamer, phosphate bound, transf; HET: NHE; 1.90A {Pseudomonas aeruginosa} SCOP: d.14.1.4 d.101.1.1 PDB: 1r6m_A Back     alignment and structure
>3dd6_A Ribonuclease PH; exoribonuclease, tRNA maturation, RNAse PH., transferase; 1.70A {Bacillus anthracis} Back     alignment and structure
>1udn_A Ribonuclease PH, RNAse PH; transferase, riken structural genomics/proteomics initiative structural genomics; 2.30A {Aquifex aeolicus} SCOP: d.14.1.4 d.101.1.1 PDB: 1udq_A 1uds_A 1udo_A Back     alignment and structure
>2je6_B RRP41, exosome complex exonuclease 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: d.14.1.4 d.101.1.1 PDB: 2jea_B* 2jeb_B* 2br2_B 2c37_B* 2c38_B* 2c39_B* 3l7z_B Back     alignment and structure
>1oys_A Ribonuclease PH; transferase, tRNA processing; 2.40A {Bacillus subtilis} SCOP: d.14.1.4 d.101.1.1 PDB: 1oyp_A 1oyr_A Back     alignment and structure
>3m7n_D Probable exosome complex exonuclease 1; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 3m85_D 2ba0_F 2ba1_E Back     alignment and structure
>2wp8_B Exosome complex component SKI6; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae} Back     alignment and structure
>2nn6_D Exosome complex exonuclease RRP46; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1 Back     alignment and structure
>2nn6_F MTR3, exosome component 6; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1 Back     alignment and structure
>3hkm_A OS03G0854200 protein; RNAse PH domain, phosphorylase, hydrolase; 1.98A {Oryza sativa japonica group} Back     alignment and structure
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A Back     alignment and structure
>3krn_A Protein C14A4.5, confirmed by transcript evidence; RNAse PH domain, homodimer, exosome, cell-death-related DNAS hydrolase; 3.92A {Caenorhabditis elegans} Back     alignment and structure
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens} Back     alignment and structure
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A Back     alignment and structure
>3gme_A Polyribonucleotide nucleotidyltransferase; protein-RNA complex, cytoplasm, nucleotidyltransferase, RNA- binding, transferase, hydrolase; 2.40A {Escherichia coli E24377A} PDB: 3gll_A 3gcm_A 3h1c_A 3cdj_A Back     alignment and structure
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A Back     alignment and structure
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens} Back     alignment and structure
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A Back     alignment and structure
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A Back     alignment and structure
>3gme_A Polyribonucleotide nucleotidyltransferase; protein-RNA complex, cytoplasm, nucleotidyltransferase, RNA- binding, transferase, hydrolase; 2.40A {Escherichia coli E24377A} PDB: 3gll_A 3gcm_A 3h1c_A 3cdj_A Back     alignment and structure
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 237
d2nn6e1187 d.14.1.4 (E:5-191) Exosome complex exonuclease RRP 3e-24
d2nn6c1181 d.14.1.4 (C:7-187) Exosome complex exonuclease RRP 8e-22
d2ba0g1176 d.14.1.4 (G:3-178) Exosome complex exonuclease 2,E 5e-20
d2nn6a1184 d.14.1.4 (A:1-184) Exosome complex exonuclease RRP 7e-19
d2je6a1191 d.14.1.4 (A:1-191) Exosome complex exonuclease 2,E 3e-15
d2nn6e294 d.101.1.1 (E:192-285) Exosome complex exonuclease 2e-13
d2ba0g279 d.101.1.1 (G:179-257) Exosome complex exonuclease 3e-13
d2nn6a2118 d.101.1.1 (A:185-302) Exosome complex exonuclease 9e-12
d2nn6c289 d.101.1.1 (C:188-276) Exosome complex exonuclease 3e-10
d2je6a284 d.101.1.1 (A:192-275) Exosome complex exonuclease 8e-08
d1e3ha3137 d.14.1.4 (A:346-482) Polynucleotide phosphorylase/ 3e-06
d2ba0d1144 d.14.1.4 (D:10-153) Exosome complex exonuclease 1, 9e-04
d1r6la1151 d.14.1.4 (A:1-151) Ribonuclease PH, domain 1 {Pseu 0.001
>d2nn6e1 d.14.1.4 (E:5-191) Exosome complex exonuclease RRP42 {Human (Homo sapiens) [TaxId: 9606]} Length = 187 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: Ribonuclease PH domain 1-like
domain: Exosome complex exonuclease RRP42
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.2 bits (231), Expect = 3e-24
 Identities = 54/142 (38%), Positives = 86/142 (60%), Gaps = 7/142 (4%)

Query: 1   MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
           +G TD++  VKAE+G P   +P++G +  FVDCS +A P FEGRGG++L  E+++ L   
Sbjct: 49  LGHTDILVGVKAEMGTPKLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYRI 108

Query: 61  LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
                    + +DL +L +   + CW LY+D L++   GNL DA+  A+KAAL NT IP 
Sbjct: 109 F-----NNKSSVDLKTLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPR 163

Query: 121 VHVAAEAASDEQPEVDISDEEF 142
           V V  +   +   ++++SD+ +
Sbjct: 164 VRVLED--EEGSKDIELSDDPY 183
>d2nn6c1 d.14.1.4 (C:7-187) Exosome complex exonuclease RRP43 {Human (Homo sapiens) [TaxId: 9606]} Length = 181 Back     information, alignment and structure
>d2ba0g1 d.14.1.4 (G:3-178) Exosome complex exonuclease 2,ECX2 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 176 Back     information, alignment and structure
>d2nn6a1 d.14.1.4 (A:1-184) Exosome complex exonuclease RRP45 {Human (Homo sapiens) [TaxId: 9606]} Length = 184 Back     information, alignment and structure
>d2je6a1 d.14.1.4 (A:1-191) Exosome complex exonuclease 2,ECX2 {Sulfolobus solfataricus [TaxId: 2287]} Length = 191 Back     information, alignment and structure
>d2nn6e2 d.101.1.1 (E:192-285) Exosome complex exonuclease RRP42 {Human (Homo sapiens) [TaxId: 9606]} Length = 94 Back     information, alignment and structure
>d2ba0g2 d.101.1.1 (G:179-257) Exosome complex exonuclease 2, ECX2 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 79 Back     information, alignment and structure
>d2nn6a2 d.101.1.1 (A:185-302) Exosome complex exonuclease RRP45 {Human (Homo sapiens) [TaxId: 9606]} Length = 118 Back     information, alignment and structure
>d2nn6c2 d.101.1.1 (C:188-276) Exosome complex exonuclease RRP43 {Human (Homo sapiens) [TaxId: 9606]} Length = 89 Back     information, alignment and structure
>d2je6a2 d.101.1.1 (A:192-275) Exosome complex exonuclease 2, ECX2 {Sulfolobus solfataricus [TaxId: 2287]} Length = 84 Back     information, alignment and structure
>d1e3ha3 d.14.1.4 (A:346-482) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4 {Streptomyces antibioticus [TaxId: 1890]} Length = 137 Back     information, alignment and structure
>d2ba0d1 d.14.1.4 (D:10-153) Exosome complex exonuclease 1, ECX1 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 144 Back     information, alignment and structure
>d1r6la1 d.14.1.4 (A:1-151) Ribonuclease PH, domain 1 {Pseudomonas aeruginosa [TaxId: 287]} Length = 151 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query237
d2nn6e1187 Exosome complex exonuclease RRP42 {Human (Homo sap 99.96
d2ba0g1176 Exosome complex exonuclease 2,ECX2 {Archaeoglobus 99.95
d2nn6a1184 Exosome complex exonuclease RRP45 {Human (Homo sap 99.95
d2je6a1191 Exosome complex exonuclease 2,ECX2 {Sulfolobus sol 99.94
d2nn6c1181 Exosome complex exonuclease RRP43 {Human (Homo sap 99.92
d2nn6e294 Exosome complex exonuclease RRP42 {Human (Homo sap 99.86
d2nn6c289 Exosome complex exonuclease RRP43 {Human (Homo sap 99.85
d2nn6a2118 Exosome complex exonuclease RRP45 {Human (Homo sap 99.84
d2ba0g279 Exosome complex exonuclease 2, ECX2 {Archaeoglobus 99.83
d2je6a284 Exosome complex exonuclease 2, ECX2 {Sulfolobus so 99.83
d1udsa1149 Ribonuclease PH, domain 1 {Aquifex aeolicus [TaxId 99.82
d2ba0d1144 Exosome complex exonuclease 1, ECX1 {Archaeoglobus 99.81
d2je6b1148 Exosome complex exonuclease 1, ECX1 {Sulfolobus so 99.8
d1r6la1151 Ribonuclease PH, domain 1 {Pseudomonas aeruginosa 99.79
d2nn6b1145 Exosome complex exonuclease RRP41 {Human (Homo sap 99.78
d2nn6f1147 Exosome complex exonuclease MTR3 {Human (Homo sapi 99.75
d1oysa1151 Ribonuclease PH, domain 1 {Bacillus subtilis [TaxI 99.74
d1e3ha3137 Polynucleotide phosphorylase/guanosine pentaphosph 99.7
d2nn6d1122 Exosome complex exonuclease RRP46 {Human (Homo sap 99.65
d2nn6d289 Exosome complex exonuclease RRP46 {Human (Homo sap 99.48
d2nn6b290 Exosome complex exonuclease RRP41 {Human (Homo sap 99.48
d2je6b286 Exosome complex exonuclease 1, ECX1 {Sulfolobus so 99.45
d1r6la288 Ribonuclease PH, domain 2 {Pseudomonas aeruginosa 99.34
d2ba0d299 Exosome complex exonuclease 1, ECX1 {Archaeoglobus 99.16
d1oysa286 Ribonuclease PH, domain 2 {Bacillus subtilis [TaxI 99.14
d2nn6f295 Exosome complex exonuclease MTR3 {Human (Homo sapi 99.11
d1udsa2105 Ribonuclease PH, domain 2 {Aquifex aeolicus [TaxId 99.09
d1e3ha2149 Polynucleotide phosphorylase/guanosine pentaphosph 99.02
d1e3ha5111 Polynucleotide phosphorylase/guanosine pentaphosph 96.65
d1e3ha696 Polynucleotide phosphorylase/guanosine pentaphosph 94.76
>d2nn6e1 d.14.1.4 (E:5-191) Exosome complex exonuclease RRP42 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: Ribonuclease PH domain 1-like
domain: Exosome complex exonuclease RRP42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=8.5e-30  Score=205.53  Aligned_cols=135  Identities=40%  Similarity=0.734  Sum_probs=120.6

Q ss_pred             CCCcEEEEEEEEEeeCCCCCCCCCceEEEEEeeCCCCCCCcCCCCCchhHHHHHHHHHHHHhcCCCCCCCCCCCCceeEE
Q 026528            1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLVVV   80 (237)
Q Consensus         1 lG~T~Vi~~V~~ei~~p~~~~p~~G~i~~~v~~~~~~~~~~~~~~~~~~~~~ls~~L~~~l~~~~~~~~~~id~e~L~I~   80 (237)
                      +|+|+|+|+|++++..|...+|++|.+.++|+++|++++.|.++++++....+++++++.|.++..     +|+++|||.
T Consensus        49 ~G~T~V~~~V~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~ls~~l~~~l~~~~~-----~d~~~L~i~  123 (187)
T d2nn6e1          49 LGHTDILVGVKAEMGTPKLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYRIFNNKSS-----VDLKTLCIS  123 (187)
T ss_dssp             ETTEEEEEECCCCCSCCCSSSCSSCCEEEECCCCTTTCSSCCTTSTHHHHHHHHHHHHHHHHHSCC-----SCSSSSCSS
T ss_pred             eCCceEEEEEEeccccccccccccceeeeeeeeccccccCcCCCCcchHHHHHHHHHHHHhccccc-----cchhhheec
Confidence            599999999999999999999999999999999999999988888889999999999999999876     999999999


Q ss_pred             cCeEEEEEEEEEEEEcCCCCHHHHHHHHHHHHHhcCCCceEEEccCcCCCCCceEecCCc
Q 026528           81 EGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDE  140 (237)
Q Consensus        81 ~g~~~w~l~idv~VL~~dGnl~da~~~A~~~AL~~~~iP~v~~~~~~~~~~~~~~~~~~~  140 (237)
                      +|+++|.|+|+|+||++|||++||+++|+.+||+|++||++.+..++.+..+++++++|.
T Consensus       124 ~~~~~w~i~v~v~vL~~DG~~~da~~~A~~~AL~d~~iP~v~v~~~~~~~~~~~~~~~p~  183 (187)
T d2nn6e1         124 PREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGSKDIELSDDPY  183 (187)
T ss_dssp             TTTCCCCEEEEEEECCCCSSHHHHHHHHHHHTTTTCCCCEEEEECC------EEEEESSC
T ss_pred             CCCccEEEEEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEecCCCCccccccCCCch
Confidence            999999999999999999999999999999999999999999987665555666655544
>d2ba0g1 d.14.1.4 (G:3-178) Exosome complex exonuclease 2,ECX2 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2nn6a1 d.14.1.4 (A:1-184) Exosome complex exonuclease RRP45 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2je6a1 d.14.1.4 (A:1-191) Exosome complex exonuclease 2,ECX2 {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d2nn6c1 d.14.1.4 (C:7-187) Exosome complex exonuclease RRP43 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2nn6e2 d.101.1.1 (E:192-285) Exosome complex exonuclease RRP42 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2nn6c2 d.101.1.1 (C:188-276) Exosome complex exonuclease RRP43 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2nn6a2 d.101.1.1 (A:185-302) Exosome complex exonuclease RRP45 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ba0g2 d.101.1.1 (G:179-257) Exosome complex exonuclease 2, ECX2 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2je6a2 d.101.1.1 (A:192-275) Exosome complex exonuclease 2, ECX2 {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1udsa1 d.14.1.4 (A:2-150) Ribonuclease PH, domain 1 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d2ba0d1 d.14.1.4 (D:10-153) Exosome complex exonuclease 1, ECX1 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2je6b1 d.14.1.4 (B:8-155) Exosome complex exonuclease 1, ECX1 {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1r6la1 d.14.1.4 (A:1-151) Ribonuclease PH, domain 1 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2nn6b1 d.14.1.4 (B:6-150) Exosome complex exonuclease RRP41 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2nn6f1 d.14.1.4 (F:29-175) Exosome complex exonuclease MTR3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oysa1 d.14.1.4 (A:1-151) Ribonuclease PH, domain 1 {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1e3ha3 d.14.1.4 (A:346-482) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4 {Streptomyces antibioticus [TaxId: 1890]} Back     information, alignment and structure
>d2nn6d1 d.14.1.4 (D:25-146) Exosome complex exonuclease RRP46 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2nn6d2 d.101.1.1 (D:147-235) Exosome complex exonuclease RRP46 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2nn6b2 d.101.1.1 (B:151-240) Exosome complex exonuclease RRP41 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2je6b2 d.101.1.1 (B:156-241) Exosome complex exonuclease 1, ECX1 {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1r6la2 d.101.1.1 (A:152-239) Ribonuclease PH, domain 2 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2ba0d2 d.101.1.1 (D:154-252) Exosome complex exonuclease 1, ECX1 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1oysa2 d.101.1.1 (A:152-237) Ribonuclease PH, domain 2 {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2nn6f2 d.101.1.1 (F:176-270) Exosome complex exonuclease MTR3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1udsa2 d.101.1.1 (A:151-255) Ribonuclease PH, domain 2 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1e3ha2 d.14.1.4 (A:3-151) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4 {Streptomyces antibioticus [TaxId: 1890]} Back     information, alignment and structure
>d1e3ha5 d.101.1.1 (A:152-262) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5 {Streptomyces antibioticus [TaxId: 1890]} Back     information, alignment and structure
>d1e3ha6 d.101.1.1 (A:483-578) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5 {Streptomyces antibioticus [TaxId: 1890]} Back     information, alignment and structure