Citrus Sinensis ID: 026557

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------
Protein Sequence
MGGKCADGAEINSIEEDSAGGLQKNECHSSVKTDTNTETDFDMSLVKLTRNGLLLLTFPREHSPNTINIVSNIFQSLGSGSLKSPVWCHRIFPIQATCVLKEKELQATVSKLVLQFVNDEQNKLSRPVKFAVGYNRRGFEEKQNKIPKDTKDSDVSALLDRNKCFTIVAAAVKEVVSDSAVDLKSPELSVLVELLPISGLPSELLVVGVSILPQKLVTTKPRLSIRALVSGTNAKNG
Secondary Structure (PSIPRED)
cccccccccccccccHHcccccccccccccccccccccccccccEEEEccccEEEEEccccccccHHHHHHHHHHHHccccccccEEEEEEccccEEccccHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEcccccHHHccccccccccccccccccHHHHHHHHHHHHHHcccccEEEcccccEEEEEEEEEccccccccEEEEEEEEccccccccccccHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccEEEEEEEcccEEEEEEccccccccHHHHHHHHHHHHcccccccccHHHcccccHHcccccHHHHHHHHHHHHHHHHHcccccccccEEEEEEEcccccccccccccccccccccHHHccHHHHHHHHHHHHHHHHHHcEEccccccEEEEEEEccccccccccEEEEEEEccHHHHcccccEEEEEcccccccccc
Coil and Loop (DISEMBL)
mggkcadgaeinsieedsagglqknechssvktdtntetdfdMSLVKLTRNGLllltfprehspntiNIVSNIFQslgsgslkspvwchrifpiqatCVLKEKELQATVSKLVLQFVNDeqnklsrpvkfavgynrrgfeekqnkipkdtkdsdvsalldrnkCFTIVAAAVKEVVsdsavdlkspelSVLVEllpisglpseLLVVGVsilpqklvttkprlSIRALVSGTNAKNG
Flexible Loop (DISEMBL)
mggkcadgaeinsieedsagglqknechssvktdtntetdfdmsLVKLTRNGLLLLTFPREHSPNTINIVSNIFQSLGSGSLKSPVWCHRIFPIQATCVLKEKELQATVSKLVLQFvndeqnklsrpvkfavgynrrgfeekqnkipkdtkdsdvsaLLDRNKCFTIVAAAVKEVVSDSAVDLKSPELSVLVELLPISGLPSELLVVGVSILpqklvttkprlsiralvsgtnakng
Low Complexity Region (SEG)
MGGKCADGAEINSIEEDSAGGLQKNECHSSVKTDTNTETDFDMSLVKLTRNGLLLLTFPREHSPNTINIVSNIFQSLGSGSLKSPVWCHRIFPIQATCVLKEKELQATVSKLVLQFVNDEQNKLSRPVKFAVGYNRRGFEEKQNKIPKDTKDSDVSALLDRNKCFTIVAAAVKEVVSDSAVDLKSPELSVLVELLPISGLPSELLVVGVSILPQKLVTTKPRLSIRALVSGTNAKNG
Disordered region (IsUnstruct)
****************************************FDMSLVKLTRNGLLLLTFPREHSPNTINIVSNIFQSLGSGSLKSPVWCHRIFPIQATCVLKEKELQATVSKLVLQFVNDEQNKLSRPVKFAVGYNR********************ALLDRNKCFTIVAAAVKEVVSDSAVDLKSPELSVLVELLPISGLPSELLVVGVSILPQKLVTTKPRLSIRAL*********
Disordered Region (DISOPRED)
**********************************************KLTRNGLLLLTFPREHSPNTINIVSNIFQS*********VWCHRIFPIQATCVLKEKELQATVSKLVLQFVNDE****SRPVKFAVGYNRRGFEEK********KDSDVSALLDRNKCFTIVAAAVKEVVSDSAVDLKSPELSVLVELLPISGLPSELLVVGVSILPQKLVTTKPR***************
Disordered Region (DISEMBL)
********AEINSIEEDSAGGLQKNECHSSVKTDTNTETDFDMSLVKLTRNGLLLLTFPREHSPNTINIVSNIFQSLGSGSLKSPVWCHRIFPIQATCVLKEKELQATVSKLVLQFVNDEQNKLSRPVKFAVGYNRRGFEEKQNKIPKDTKDSDVSALLDRNKCFTIVAAAVKEVVSDSAVDLKSPELSVLVELLPISGLPSELLVVGVSILPQKLVTTKPRLSIRALVSGTNAKNG
Disordered Region (DISPRO)
***************************************DFDMSLVKLTRNGLLLLTFPREHSPNTINIVSNIFQSLGSGSLKSPVWCHRIFPIQATCVLKEKELQATVSKLVLQFVNDEQNKLSRPVKFAVGYNRRGFEEK*********DSDVSALLDRNKCFTIVAAAVKEVVSDSAVDLKSPELSVLVELLPISGLPSELLVVGVSILPQKLVTTKPRLSIRALVS*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGGKCADGAEINSIEEDSAGGLQKNECHSSVKTDTNTETDFDMSLVKLTRNGLLLLTFPREHSPNTINIVSNIFQSLGSGSLKSPVWCHRIFPIQATCVLKEKELQATVSKLVLQFVNDEQNKLSRPVKFAVGYNRRGFEEKQNKIPKDTKDSDVSALLDRNKCFTIVAAAVKEVVSDSAVDLKSPELSVLVELLPISGLPSELLVVGVSILPQKLVTTKPRLSIRALVSGTNAKNG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	237
255561747	336	conserved hypothetical protein [Ricinus	0.966	0.681	0.634	3e-77
225424542	337	PREDICTED: uncharacterized protein LOC10	0.953	0.670	0.6	5e-71
147775350	371	hypothetical protein VITISV_023512 [Viti	0.962	0.614	0.598	6e-70
42561854	348	uncharacterized protein [Arabidopsis tha	0.852	0.580	0.630	1e-64
24030215	373	unknown protein [Arabidopsis thaliana]	0.852	0.541	0.630	2e-64
297849234	348	hypothetical protein ARALYDRAFT_471019 [	0.852	0.580	0.610	1e-63
356575470	320	PREDICTED: uncharacterized protein LOC10	0.949	0.703	0.575	2e-63
388515009	369	unknown [Lotus japonicus]	0.953	0.612	0.559	5e-63
283132369	336	hypothetical protein [Lotus japonicus]	0.797	0.562	0.635	3e-61
449445272	260	PREDICTED: uncharacterized protein LOC10	0.932	0.85	0.586	8e-60

>gi|255561747|ref|XP_002521883.1| conserved hypothetical protein [Ricinus communis] gi|223538921|gb|EEF40519.1| conserved hypothetical protein [Ricinus communis]

 Score =  293 bits (751), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 151/238 (63%), Positives = 178/238 (74%), Gaps = 9/238 (3%)

Query: 1   MGGKCADGAEINSIEEDSAGGLQKNECHSSVKTDTNTETDFDMSLVKLTRNGLLLLTFPR 60
           MGG CA G E   + ED            S +T T  ET F +SLVKLTR+GLLLL F  
Sbjct: 105 MGGTCAQGMESKDVSEDPD--------QVSEETHTVEETGFTLSLVKLTRSGLLLLNFVG 156

Query: 61  EHSPNTINIVSNIFQSLGSGSLKSPVWCHRIFPIQATCVLKEKELQATVSKLVLQFVNDE 120
           E+SP+   IVSNIFQ + SGSLKSP+WCHRIFPIQATC L EKEL+  VSKLVL+F+ND+
Sbjct: 157 ENSPDATEIVSNIFQRIESGSLKSPLWCHRIFPIQATCCLDEKELRTVVSKLVLRFINDK 216

Query: 121 QNKLSRPVKFAVGYNRRGFEEKQNKIPKDT-KDSDVSALLDRNKCFTIVAAAVKEVVSDS 179
            NK  RP+K+AVGYNRRG EE Q K  KDT KDS + +LLDRNKCF +VA+AVK+V+SDS
Sbjct: 217 ANKFERPIKYAVGYNRRGIEETQAKNVKDTSKDSALCSLLDRNKCFDVVASAVKDVISDS 276

Query: 180 AVDLKSPELSVLVELLPISGLPSELLVVGVSILPQKLVTTKPRLSIRALVSGTNAKNG 237
           AVDLKSPELS+LVELLP+SG+P+  LV  VS+LPQ LV+ KPRL I+ LVS  NAK G
Sbjct: 277 AVDLKSPELSILVELLPLSGVPNGSLVAAVSVLPQNLVSVKPRLCIKPLVSDANAKKG 334

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424542|ref|XP_002285300.1| PREDICTED: uncharacterized protein LOC100267955 [Vitis vinifera] gi|296081413|emb|CBI16846.3| unnamed protein product [Vitis vinifera]

 Score =  273 bits (697), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 141/235 (60%), Positives = 173/235 (73%), Gaps = 9/235 (3%)

Query: 11  INSIEEDSA--------GGLQKNECHSSVKTDTNTETDFDMSLVKLTRNGLLLLTFPREH 62
           +NS+E  +A        G L K+   SS   D   E    +SLVKLTR+GLLL  FPR +
Sbjct: 100 VNSVENKTASNNCGEDGGELSKDAGVSSANRDAIVENGHVLSLVKLTRSGLLLFVFPRNN 159

Query: 63  SPNTINIVSNIFQSLGSGSLKSPVWCHRIFPIQATCVLKEKELQATVSKLVLQFVNDEQN 122
           S +T+++VS I +SL SGS+K P+WCHRIFPIQATC L EKEL   V+KLV+QFVN+EQN
Sbjct: 160 SVDTVDVVSQIIRSLQSGSVKPPLWCHRIFPIQATCRLDEKELHEVVTKLVVQFVNNEQN 219

Query: 123 KLSRPVKFAVGYNRRGFEEKQNKIPKDT-KDSDVSALLDRNKCFTIVAAAVKEVVSDSAV 181
           K +RP+KFAVGYNRRG EE + KIPK T +D +  ALLDR KCF++VA AVK  VSDS V
Sbjct: 220 KFARPIKFAVGYNRRGIEETEMKIPKSTPRDCNSHALLDRKKCFSVVATAVKGAVSDSVV 279

Query: 182 DLKSPELSVLVELLPISGLPSELLVVGVSILPQKLVTTKPRLSIRALVSGTNAKN 236
           DLKSPELSVLVELLP+S +P+  +VV VS+LPQ L+TTKPRL I+AL+S T   N
Sbjct: 280 DLKSPELSVLVELLPLSRVPNGSMVVAVSVLPQNLITTKPRLCIKALLSDTKVGN 334

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147775350|emb|CAN65717.1| hypothetical protein VITISV_023512 [Vitis vinifera]

 Score =  269 bits (688), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 137/229 (59%), Positives = 169/229 (73%), Gaps = 1/229 (0%)

Query: 5   CADGAEINSIEEDSAGGLQKNECHSSVKTDTNTETDFDMSLVKLTRNGLLLLTFPREHSP 64
           C +  +I  +     G L K+   SS   D   E    +SLVKLTR+GLLL  FPR +S 
Sbjct: 111 CGEDGDIADLCLVQVGELSKDAGVSSANXDAIVENGHVLSLVKLTRSGLLLFVFPRNNSV 170

Query: 65  NTINIVSNIFQSLGSGSLKSPVWCHRIFPIQATCVLKEKELQATVSKLVLQFVNDEQNKL 124
           +T+++VS I +SL SGS+K P+WCH IFPIQATC L EKEL   V+KLV+QFVN+EQNK 
Sbjct: 171 DTVDVVSQIIRSLQSGSVKPPLWCHXIFPIQATCRLDEKELHEVVTKLVVQFVNNEQNKF 230

Query: 125 SRPVKFAVGYNRRGFEEKQNKIPKDT-KDSDVSALLDRNKCFTIVAAAVKEVVSDSAVDL 183
           +RP+KFAVGYNRRG EE + KIPK T +D +  ALLDR KCF++VA AVK  VSDS VDL
Sbjct: 231 ARPIKFAVGYNRRGIEETEMKIPKSTPRDCNSHALLDRKKCFSVVATAVKGAVSDSVVDL 290

Query: 184 KSPELSVLVELLPISGLPSELLVVGVSILPQKLVTTKPRLSIRALVSGT 232
           KSPELSVLVELLP+S +P+  +VV VS+LPQ L+TTKPRL I+AL+S T
Sbjct: 291 KSPELSVLVELLPLSRVPNGSMVVAVSVLPQNLITTKPRLCIKALLSDT 339

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42561854|ref|NP_172400.2| uncharacterized protein [Arabidopsis thaliana] gi|14334964|gb|AAK59659.1| unknown protein [Arabidopsis thaliana] gi|332190304|gb|AEE28425.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  252 bits (643), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 128/203 (63%), Positives = 153/203 (75%), Gaps = 1/203 (0%)

Query: 36  NTETDFDMSLVKLTRNGLLLLTFPREHSPNTINIVSNIFQSLGSGSLKSPVWCHRIFPIQ 95
           N E +  MSLVKLT++GLLL TFP E+SPNT NIVS +FQS+ SG+LK+P+WCHRIFP+Q
Sbjct: 144 NEEHNSLMSLVKLTKSGLLLFTFPVENSPNTTNIVSRVFQSMESGALKAPIWCHRIFPVQ 203

Query: 96  ATCVLKEKELQATVSKLVLQFVNDEQNKLSRPVKFAVGYNRRGFEEKQNKIPKDTKDSDV 155
           ATC L EKEL+ TVSKLV +FVND+ N LS+PVKFA GY RRG EE + KI KD  D  V
Sbjct: 204 ATCGLTEKELRETVSKLVQRFVNDKDNTLSKPVKFAAGYQRRGAEETKGKIRKDASDVLV 263

Query: 156 SA-LLDRNKCFTIVAAAVKEVVSDSAVDLKSPELSVLVELLPISGLPSELLVVGVSILPQ 214
              LLDR KCF  VAA VK++V DS VDLKSPEL VLVELLP+S + S   V  VS+LP 
Sbjct: 264 QCPLLDRIKCFETVAAGVKDIVPDSVVDLKSPELCVLVELLPLSRISSGSFVAAVSVLPH 323

Query: 215 KLVTTKPRLSIRALVSGTNAKNG 237
           +LV+TKP+L I+ LV  +  K G
Sbjct: 324 RLVSTKPKLCIKPLVPESKHKKG 346

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24030215|gb|AAN41286.1| unknown protein [Arabidopsis thaliana]

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 128/203 (63%), Positives = 153/203 (75%), Gaps = 1/203 (0%)

Query: 36  NTETDFDMSLVKLTRNGLLLLTFPREHSPNTINIVSNIFQSLGSGSLKSPVWCHRIFPIQ 95
           N E +  MSLVKLT++GLLL TFP E+SPNT NIVS +FQS+ SG+LK+P+WCHRIFP+Q
Sbjct: 169 NEEHNSLMSLVKLTKSGLLLFTFPVENSPNTTNIVSRVFQSMESGALKAPIWCHRIFPVQ 228

Query: 96  ATCVLKEKELQATVSKLVLQFVNDEQNKLSRPVKFAVGYNRRGFEEKQNKIPKDTKDSDV 155
           ATC L EKEL+ TVSKLV +FVND+ N LS+PVKFA GY RRG EE + KI KD  D  V
Sbjct: 229 ATCGLTEKELRETVSKLVQRFVNDKDNTLSKPVKFAAGYQRRGAEETKGKIRKDASDVLV 288

Query: 156 SA-LLDRNKCFTIVAAAVKEVVSDSAVDLKSPELSVLVELLPISGLPSELLVVGVSILPQ 214
              LLDR KCF  VAA VK++V DS VDLKSPEL VLVELLP+S + S   V  VS+LP 
Sbjct: 289 QCPLLDRIKCFETVAAGVKDIVPDSVVDLKSPELCVLVELLPLSRISSGSFVAAVSVLPH 348

Query: 215 KLVTTKPRLSIRALVSGTNAKNG 237
           +LV+TKP+L I+ LV  +  K G
Sbjct: 349 RLVSTKPKLCIKPLVPESKHKKG 371

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297849234|ref|XP_002892498.1| hypothetical protein ARALYDRAFT_471019 [Arabidopsis lyrata subsp. lyrata] gi|297338340|gb|EFH68757.1| hypothetical protein ARALYDRAFT_471019 [Arabidopsis lyrata subsp. lyrata]

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 124/203 (61%), Positives = 154/203 (75%), Gaps = 1/203 (0%)

Query: 36  NTETDFDMSLVKLTRNGLLLLTFPREHSPNTINIVSNIFQSLGSGSLKSPVWCHRIFPIQ 95
           N E +  MSLVKLT++GLLL TFP E+SP+T NIVS +FQS+ SG+LK+P+WCHRIFP+Q
Sbjct: 144 NEEHNSLMSLVKLTKSGLLLFTFPIENSPDTTNIVSRVFQSMESGALKAPIWCHRIFPVQ 203

Query: 96  ATCVLKEKELQATVSKLVLQFVNDEQNKLSRPVKFAVGYNRRGFEEKQNKIPKDTKDS-D 154
           ATC L EKEL+ TVSKLV +FV+++ N LS+PVKFA GY RRG EE + KI K+  +  D
Sbjct: 204 ATCGLTEKELRETVSKLVQRFVDNKDNTLSKPVKFAAGYQRRGVEETKGKIQKEASEVLD 263

Query: 155 VSALLDRNKCFTIVAAAVKEVVSDSAVDLKSPELSVLVELLPISGLPSELLVVGVSILPQ 214
              LLDR KCF  VAA VK++V DS VDLKSPEL VLVELLP+S +PS   V  VS+LP 
Sbjct: 264 QCPLLDRIKCFETVAAGVKDIVPDSVVDLKSPELCVLVELLPLSRIPSGSFVAAVSVLPH 323

Query: 215 KLVTTKPRLSIRALVSGTNAKNG 237
           +LV+TKP+L I+ LV  +  K G
Sbjct: 324 RLVSTKPKLCIKPLVPESKHKKG 346

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575470|ref|XP_003555863.1| PREDICTED: uncharacterized protein LOC100797260 [Glycine max]

 Score =  248 bits (633), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 130/226 (57%), Positives = 162/226 (71%), Gaps = 1/226 (0%)

Query: 7   DGAEINSIEEDSAGGLQKNECHSSVKTDTNTETDFDMSLVKLTRNGLLLLTFPREHSPNT 66
           D AE    E  +A      +  S VK +   +   ++SLVKLTRNGLLLLTFP    P+T
Sbjct: 89  DAAEECFDESPTANSGADGKLSSPVKAEAEKDGIANLSLVKLTRNGLLLLTFPINTHPDT 148

Query: 67  INIVSNIFQSLGSGSLKSPVWCHRIFPIQATCVLKEKELQATVSKLVLQFVNDEQNKLSR 126
           + IVSNI Q+L SG++  PVWCHRIFPIQATC L EKELQ  VS LV +F+ D+Q+KL R
Sbjct: 149 VTIVSNIIQALESGTVSLPVWCHRIFPIQATCNLNEKELQEVVSMLVKKFLADKQDKLER 208

Query: 127 PVKFAVGYNRRGFEEKQNKIPKDTKDSDVSALLDRNKCFTIVAAAVKEVVSDSAVDLKSP 186
           P+KFAVG+NRRG EE      +++ DS   +LLDRNKCF +VA+AV  VV DS VDL+SP
Sbjct: 209 PLKFAVGFNRRGIEE-TTLAKENSNDSKAFSLLDRNKCFGVVASAVNHVVEDSVVDLRSP 267

Query: 187 ELSVLVELLPISGLPSELLVVGVSILPQKLVTTKPRLSIRALVSGT 232
           ELSVLVELLP+SG+P   ++V VS+LP+ LV+TKPRL I+AL S T
Sbjct: 268 ELSVLVELLPLSGVPDASIIVAVSVLPRNLVSTKPRLCIKALNSNT 313

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388515009|gb|AFK45566.1| unknown [Lotus japonicus]

 Score =  246 bits (628), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 131/234 (55%), Positives = 165/234 (70%), Gaps = 8/234 (3%)

Query: 1   MGGKCADGAEINSIEEDSAGGLQKNECHSSVKTDTNTETDF-DMSLVKLTRNGLLLLTFP 59
           +GG+C D  E  S+ ++S  G    +  S  K +   +    D+SLVKLTRNGLLL  +P
Sbjct: 135 IGGECLDVKETESVTDNSGDG----KVLSPAKAEAEDKDGVTDLSLVKLTRNGLLLFIYP 190

Query: 60  REHSPNTINIVSNIFQSLGSGSLKSPVWCHRIFPIQATCVLKEKELQATVSKLVLQFVND 119
               P+T+NIVSNI QSL SGS   PVWCHRIFPIQATC L EKE Q  VS LV +F+  
Sbjct: 191 NNMFPDTVNIVSNIIQSLESGSTSLPVWCHRIFPIQATCRLNEKEFQEVVSMLVKKFLAS 250

Query: 120 EQNKLSRPVKFAVGYNRRGFEEKQNKIPKDTKD-SDVSALLDRNKCFTIVAAAVKEVVSD 178
           +Q KL RP+KFAVGYNRRG E+   K  K+  + S+  +LLDRNKCF++VA+AV +VV D
Sbjct: 251 KQGKLERPLKFAVGYNRRGIED--TKFAKENSNGSNAFSLLDRNKCFSVVASAVNDVVED 308

Query: 179 SAVDLKSPELSVLVELLPISGLPSELLVVGVSILPQKLVTTKPRLSIRALVSGT 232
           S VDL+SPELS+LVELLP+S +P+  LVV VS LP+ LV+TKPRL ++AL S T
Sbjct: 309 SVVDLRSPELSILVELLPLSRVPNGSLVVAVSALPRNLVSTKPRLCVKALTSNT 362

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|283132369|dbj|BAI63590.1| hypothetical protein [Lotus japonicus]

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 122/192 (63%), Positives = 148/192 (77%), Gaps = 3/192 (1%)

Query: 42  DMSLVKLTRNGLLLLTFPREHSPNTINIVSNIFQSLGSGSLKSPVWCHRIFPIQATCVLK 101
           D+SLVKLTRNGLLL  +P    P+T+NIVSNI QSL SGS   PVWCHRIFPIQATC L 
Sbjct: 140 DLSLVKLTRNGLLLFIYPNNMFPDTVNIVSNIIQSLESGSTSLPVWCHRIFPIQATCRLN 199

Query: 102 EKELQATVSKLVLQFVNDEQNKLSRPVKFAVGYNRRGFEEKQNKIPKDTKD-SDVSALLD 160
           EKELQ  VS LV +F+  +Q KL RP+KFAVGYNRRG E+   K  K+  + S+  +LLD
Sbjct: 200 EKELQEVVSMLVKKFLASKQGKLERPLKFAVGYNRRGIED--TKFAKENSNGSNAFSLLD 257

Query: 161 RNKCFTIVAAAVKEVVSDSAVDLKSPELSVLVELLPISGLPSELLVVGVSILPQKLVTTK 220
           RNKCF++VA+AV +VV DS VDL+SPELS+LVELLP+S +P+  LVV VS LP+ LV+TK
Sbjct: 258 RNKCFSVVASAVNDVVEDSVVDLRSPELSILVELLPLSRVPNGSLVVAVSALPRNLVSTK 317

Query: 221 PRLSIRALVSGT 232
           PRL ++AL S T
Sbjct: 318 PRLCVKALTSNT 329

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445272|ref|XP_004140397.1| PREDICTED: uncharacterized protein LOC101219243 [Cucumis sativus]

 Score =  236 bits (601), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 135/230 (58%), Positives = 165/230 (71%), Gaps = 9/230 (3%)

Query: 14  IEEDSAGGLQKNECHS------SVKTDTNTETDFDMSLVKLTRNGLLLLTFPREHSPNTI 67
           ++  S GG    + H+      S K++   E    +SLVKLTR+GLLL TF ++ SP+T+
Sbjct: 33  VDHRSVGGESSTDEHAKETSLISTKSEAKVEKCSPISLVKLTRSGLLLFTFTKDISPDTV 92

Query: 68  NIVSNIFQSLGSGSLKSPVWCHRIFPIQATCVLKEKELQATVSKLVLQFVNDEQNKLSRP 127
            IV +I QSL + +LKS  WCHRIFPIQATC L E +LQ  VSKLVL F+ND+ N LS P
Sbjct: 93  YIVKDIMQSLEARTLKSLAWCHRIFPIQATCSLNENDLQGVVSKLVLHFMNDKGNILSHP 152

Query: 128 VKFAVGYNRRGFEEKQNKIPKDTKDSD-VSALLDRNKCFTIVAAAVKEVVSDSAVDLKSP 186
           VKFA+GYNRRG EE + K  K  +DS  V+ +L R+KCF+IVAAAVK VVSD+ VDLKSP
Sbjct: 153 VKFAIGYNRRGIEETEMK--KTFEDSSGVNVILGRDKCFSIVAAAVKGVVSDAIVDLKSP 210

Query: 187 ELSVLVELLPISGLPSELLVVGVSILPQKLVTTKPRLSIRALVSGTNAKN 236
           EL VLVELLP+SGLPS   VVGVS+L   LVTTKPRL I+AL S T AK+
Sbjct: 211 ELCVLVELLPVSGLPSGSSVVGVSVLSNNLVTTKPRLCIKALTSDTKAKS 260

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	237
TAIR|locus:2203033	348	AT1G09290 "AT1G09290" [Arabido	0.966	0.658	0.575	2.1e-61

TAIR|locus:2203033 AT1G09290 "AT1G09290" [Arabidopsis thaliana (taxid:3702)]

 Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
 Identities = 133/231 (57%), Positives = 163/231 (70%)

Query:     8 GAEINSIEEDSAGGLQKNECHSSVKTDTNTETDFDMSLVKLTRNGLLLLTFPREHSPNTI 67
             G +   +E D+     +N     +K   N E +  MSLVKLT++GLLL TFP E+SPNT 
Sbjct:   117 GEKTVPLENDALQETGENPNVEDLKL-ANEEHNSLMSLVKLTKSGLLLFTFPVENSPNTT 175

Query:    68 NIVSNIFQSLGSGSLKSPVWCHRIFPIQATCVLKEKELQATVSKLVLQFVNDEQNKLSRP 127
             NIVS +FQS+ SG+LK+P+WCHRIFP+QATC L EKEL+ TVSKLV +FVND+ N LS+P
Sbjct:   176 NIVSRVFQSMESGALKAPIWCHRIFPVQATCGLTEKELRETVSKLVQRFVNDKDNTLSKP 235

Query:   128 VKFAVGYNRRGFEEKQNKIPKDTKDSDVSA-LLDRNKCFTIVAAAVKEVVSDSAVDLKSP 186
             VKFA GY RRG EE + KI KD  D  V   LLDR KCF  VAA VK++V DS VDLKSP
Sbjct:   236 VKFAAGYQRRGAEETKGKIRKDASDVLVQCPLLDRIKCFETVAAGVKDIVPDSVVDLKSP 295

Query:   187 ELSVLVELLPISGLPSELLVVGVSILPQKLVTTKPRLSIRALVSGTNAKNG 237
             EL VLVELLP+S + S   V  VS+LP +LV+TKP+L I+ LV  +  K G
Sbjct:   296 ELCVLVELLPLSRISSGSFVAAVSVLPHRLVSTKPKLCIKPLVPESKHKKG 346


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.131   0.366    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      237       237   0.00090  113 3  11 23  0.47    33
                                                     32  0.43    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  579 (62 KB)
  Total size of DFA:  155 KB (2093 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.52u 0.08s 21.60t   Elapsed:  00:00:01
  Total cpu time:  21.52u 0.08s 21.60t   Elapsed:  00:00:01
  Start:  Fri May 10 19:25:53 2013   End:  Fri May 10 19:25:54 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00030689001 SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (329 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	237
cd11717	158	cd11717, THUMP_THUMPD1_like, THUMP domain-containi	2e-13
COG1818	175	COG1818, COG1818, Predicted RNA-binding protein, c	0.001

>gnl|CDD|212586 cd11717, THUMP_THUMPD1_like, THUMP domain-containing protein 1-like

 Score = 65.3 bits (160), Expect = 2e-13
 Identities = 35/168 (20%), Positives = 64/168 (38%), Gaps = 34/168 (20%)

Query: 46  VKLTRNGLLLLTFPREHSPNTINIVSNIFQSLGSGSLKSPVWCHRIFPIQATCVLKEKEL 105
           V+     ++ +       P  + +V  IF+   S   K   +  R+ PI  TC    +E+
Sbjct: 25  VETGVKNVVFIKTRPPVDP--VELVEKIFEDAASTKKKRTRFIQRLIPIDVTCKASLEEI 82

Query: 106 QATVSKLVLQFVNDEQNKLSRPVKFAVGYNRRGFEEKQNKIPKDTKDSDVSALLDRNKCF 165
           +    +L+ +     +     P  FAV    R      NK+ +D                
Sbjct: 83  EKLAKELLKKHFPTAE----PPKTFAVECKSRNN----NKLSRD---------------- 118

Query: 166 TIVAAAVKEVVSDSAVDLKSPELSVLVELLPISGLPSELLVVGVSILP 213
            ++ A  + V     VDLK+P+  +LVE++          V G+S++ 
Sbjct: 119 EVIKAVAELVPEIHKVDLKNPDKVILVEVIK--------NVCGISVVK 158

This family contains THUMP domain-only proteins including THUMP domain-containing protein 1 and Saccharomyces cerevisiae Tan1. Tan1 is non essential and has been shown to be required for the formation of the modified nucleoside N(4)-acetylcytidine (ac(4)C) in tRNA. To date, there is no functional information available about THUMPD1. The THUMP domain is named after thiouridine synthases, methylases and PSUSs. The domain consists of about 110 amino acid residues. It is predicted to be an RNA-binding domain and probably functions by delivering a variety of RNA modification enzymes to their targets. Length = 158

>gnl|CDD|224731 COG1818, COG1818, Predicted RNA-binding protein, contains THUMP domain [General function prediction only]

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 31/127 (24%), Positives = 47/127 (37%), Gaps = 29/127 (22%)

Query: 82  LKSPVWCHRIFPIQATCVLKEKELQATVSKLVLQFVNDEQNKLSRPVKFAVGYNRRGFEE 141
           LK      R+ P++        E++   ++L        + K+     FAV   RRG   
Sbjct: 55  LKEVPEVERVIPVEIEVETDLDEIEEAAAELA-------EEKIKEGKTFAVRTKRRG--- 104

Query: 142 KQNKIPKDTKDSDVSALLDRNKCFTIVAAAVKEVVSDSAVDLKSPELSVLVELL----PI 197
                       D ++         +V  AVK+      VDL+ P+  V VE+L     I
Sbjct: 105 ----------KHDFTSR----DVEVVVGEAVKKATGAE-VDLEDPDKVVWVEVLGDRAGI 149

Query: 198 SGLPSEL 204
           S LP E 
Sbjct: 150 SVLPGEK 156

Length = 175

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	237
KOG3943	291	consensus THUMP domain-containing proteins [Genera	100.0
PF02926	144	THUMP: THUMP domain; InterPro: IPR004114 The THUMP	99.68
COG1818	175	Predicted RNA-binding protein, contains THUMP doma	99.21
PRK01565	394	thiamine biosynthesis protein ThiI; Provisional	98.64
PRK01269	482	tRNA s(4)U8 sulfurtransferase; Provisional	98.44
PRK08384	381	thiamine biosynthesis protein ThiI; Provisional	98.21
TIGR00342	371	thiazole biosynthesis/tRNA modification protein Th	98.08
COG0301	383	ThiI Thiamine biosynthesis ATP pyrophosphatase [Co	97.8
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	93.35
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	83.97
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	81.68

>KOG3943 consensus THUMP domain-containing proteins [General function prediction only]

Probab=100.00  E-value=1.7e-40  Score=293.33  Aligned_cols=189  Identities=17%  Similarity=0.239  Sum_probs=167.9

Q ss_pred             cccccCChHHHHHhhhhhhccccCccccCC--CCcccCceeeecCCCeEEEEEeCCCCCCChHHHHHHHHHHhhcC--CC
Q 026557            7 DGAEINSIEEDSAGGLQKNECHSSVKTDTN--TETDFDMSLVKLTRNGLLLLTFPREHSPNTINIVSNIFQSLGSG--SL   82 (237)
Q Consensus         7 ~~~~~~sie~~i~~el~~~~~~~~~~~~~~--~~~~~~f~~Vkl~~~g~vFi~t~~~~~~dP~~lV~~I~~D~~~~--~~   82 (237)
                      .++..+++|+++..++++++++...++-+.  ++++..|++|+++|+|+.|+++..+.  .|.++|+.|++|+.+.  +.
T Consensus        82 ~E~ap~gsE~~~~~aeaElkdEe~gddLk~~~~~~~~P~~Fv~~~~~Cv~f~~t~Kni--Vpe~~v~~i~~dm~elk~k~  159 (291)
T KOG3943|consen   82 KEQAPSGSEGEDDDAEAELKDEEVGDDLKASTEMRLRPFQFVESGANCVVFIRTLKNI--VPEKLVHHILQDMYELKTKK  159 (291)
T ss_pred             cccCCCCCcCCCChHHHhhhhhhhHHHHhhhhhhhcCchhhhhccCceEEeecccCcc--CchHHHHHHHHHHHhhhccc
Confidence            445578999999999999988754432222  44667799999999999999998765  8999999999999885  47


Q ss_pred             CCCceeEeecccceeeecCHHHHHHHHHHHHHhhcccccccCCCCeeeEEEeeccCchhhccCCCCCCCCCccccCCChH
Q 026557           83 KSPVWCHRIFPIQATCVLKEKELQATVSKLVLQFVNDEQNKLSRPVKFAVGYNRRGFEEKQNKIPKDTKDSDVSALLDRN  162 (237)
Q Consensus        83 k~tRfi~RL~PI~~TC~A~~~eI~~~a~~ll~~~f~~~~~~~~~p~kFAI~~~~Rn~e~~~~~~~~~~~~~~~n~~L~R~  162 (237)
                      +++||+|||+||++||.|.+++|.+++..++.+||+....  .+-.||+|+|++||                 |+++.|+
T Consensus       160 kRtR~~Qr~~Pi~~tc~a~le~m~k~a~~VI~p~fkap~t--gK~~tf~VE~k~RN-----------------n~~v~r~  220 (291)
T KOG3943|consen  160 KRTRVIQRMLPISGTCKAFLEDMKKYAETVIEPWFKAPNT--GKKGTFQVEYKSRN-----------------NSHVNRE  220 (291)
T ss_pred             hhhhhhhhhccccchHHhhHHHHHHHHHHhhcccccCCCC--CcCceEEEEEEecc-----------------ccchhHH
Confidence            8899999999999999999999999999999999975432  25669999999999                 9999999


Q ss_pred             HHHHHHHHHhhhcCCCCeeeCCCCCeEEEEEEeecCCCCCcccEEEEEeeCCccccccccee
Q 026557          163 KCFTIVAAAVKEVVSDSAVDLKSPELSVLVELLPISGLPSELLVVGVSILPQKLVTTKPRLS  224 (237)
Q Consensus       163 ~vI~~VA~~V~~~~~~hkVDLknPd~~IlVEV~k~~g~~~~~~vcgvSVv~~y~~~~K~~l~  224 (237)
                      +||++|+.+|...++..+|||+|||++|+|||++        ++.||||+++|+.++||+|.
T Consensus       221 ~vi~~V~~~Vc~l~se~~VdL~n~D~t~~Ve~~k--------s~I~~~Vv~dy~~~RKYnlq  274 (291)
T KOG3943|consen  221 EVIREVAGIVCTLNSENKVDLTNPDYTVVVEIIK--------AVICLSVVKDYMLFRKYNLQ  274 (291)
T ss_pred             HHHHHHHHHHHhcCccceeeccCCCeEEEEEeee--------ceeeeeehHHHHHHHHhhHH
Confidence            9999999999999999999999999999999997        78999999999999999985

>PF02926 THUMP: THUMP domain; InterPro: IPR004114 The THUMP domain is shared by 4-thiouridine, pseudouridine synthases and RNA methylases[] and is probably an RNA-binding domain that adopts an alpha/beta fold similar to that found in the C-terminal domain of translation initiation factor 3 and ribosomal protein S8

Probab=99.68  E-value=2.1e-16  Score=126.66  Aligned_cols=129  Identities=23%  Similarity=0.272  Sum_probs=101.6

Q ss_pred             eeeecCCCeEEEEEeCCCCCCChHHHHHHHHHHhhcCCCCCCceeEeecccceeeecCHHHHHHHHHHHHHhhccccccc
Q 026557           44 SLVKLTRNGLLLLTFPREHSPNTINIVSNIFQSLGSGSLKSPVWCHRIFPIQATCVLKEKELQATVSKLVLQFVNDEQNK  123 (237)
Q Consensus        44 ~~Vkl~~~g~vFi~t~~~~~~dP~~lV~~I~~D~~~~~~k~tRfi~RL~PI~~TC~A~~~eI~~~a~~ll~~~f~~~~~~  123 (237)
                      ..+..+.. .+++......+....+.+.+.+.        ..+|++|+.|++..|.+++++|.+.|..++..++....  
T Consensus        15 ~~~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~--------~~~~~~ri~p~~~~~~~~~~~i~~~~~~~~~~~~~~~~--   83 (144)
T PF02926_consen   15 EVIESGRG-RILIDVGGEDPEGDSEEIYRALE--------KLRGISRIIPICRFCEADLEEIKEKAKELLWEKFIKED--   83 (144)
T ss_dssp             CEECCTTC-EEEEETTEEEEEEHHHHHHHHHH--------HSSSESEEEEEEEEEESSHHHHHHHHHCSHGGGHSHTT--
T ss_pred             EEEEccCC-EEEEEeCCccccCCHHHHHHHHh--------cccceeEEEEEEEEcCCCHHHHHHHHHHHHHHHhCCCC--
Confidence            33344444 45565533222335666666666        34599999999999999999999999999998875432  


Q ss_pred             CCCCeeeEEEeeccCchhhccCCCCCCCCCcccc-CCChHHHHHHHHHHhhhcCCCCeeeCCCCCeEEEEEEeecCCCCC
Q 026557          124 LSRPVKFAVGYNRRGFEEKQNKIPKDTKDSDVSA-LLDRNKCFTIVAAAVKEVVSDSAVDLKSPELSVLVELLPISGLPS  202 (237)
Q Consensus       124 ~~~p~kFAI~~~~Rn~e~~~~~~~~~~~~~~~n~-~L~R~~vI~~VA~~V~~~~~~hkVDLknPd~~IlVEV~k~~g~~~  202 (237)
                          .+|||.+++|+                 +. .+.++++.+.|+++|....+ ++|||+|||++|.||+++      
T Consensus        84 ----~tF~V~~~r~~-----------------~~~~~~s~ei~~~vg~~i~~~~~-~~Vdl~~Pd~~i~Vev~~------  135 (144)
T PF02926_consen   84 ----KTFAVRCRRRG-----------------KHFPFTSMEIEREVGDAIKEKGG-PKVDLKNPDVVIHVEVRK------  135 (144)
T ss_dssp             ----SEEEEEEEEES-----------------SSSSSCHHHHHHHHHHHHHHHHH-TEE-SSSSSEEEEEEEET------
T ss_pred             ----CEEEEEEEEcC-----------------CccccCHHHHHHHHHHHHHHHhC-CCccCcCcCEEEEEEEEC------
Confidence                29999999999                 77 89999999999999997654 899999999999999997      


Q ss_pred             cccEEEEEeeC
Q 026557          203 ELLVVGVSILP  213 (237)
Q Consensus       203 ~~~vcgvSVv~  213 (237)
                        ..|+||+.|
T Consensus       136 --~~~~i~i~~  144 (144)
T PF02926_consen  136 --DKCYISIDT  144 (144)
T ss_dssp             --TEEEEEEES
T ss_pred             --CEEEEEEeC
Confidence              789999975

The THUMP domain probably functions by delivering a variety of RNA modification enzymes to their targets []. This domain is found in the thiamine biosynthesis proteins (ThiI) (see IPR003720 from INTERPRO).; PDB: 3TLJ_A 3TM5_B 3TM4_A 2DIR_A 3TMA_A 1VBK_B 3K0B_A 2C5S_A 3LDU_A 3V8V_B ....

>COG1818 Predicted RNA-binding protein, contains THUMP domain [General function prediction only]

Probab=99.21  E-value=4.4e-11  Score=102.67  Aligned_cols=135  Identities=24%  Similarity=0.322  Sum_probs=98.8

Q ss_pred             ceeeecCCCeEEEEEeCCCCCCChHHHHHHHHHHhhcCCCCCCceeEeecccceeeecCHHHHHHHHHHHHHhhcccccc
Q 026557           43 MSLVKLTRNGLLLLTFPREHSPNTINIVSNIFQSLGSGSLKSPVWCHRIFPIQATCVLKEKELQATVSKLVLQFVNDEQN  122 (237)
Q Consensus        43 f~~Vkl~~~g~vFi~t~~~~~~dP~~lV~~I~~D~~~~~~k~tRfi~RL~PI~~TC~A~~~eI~~~a~~ll~~~f~~~~~  122 (237)
                      ..+.-++..|++.+..-  .  |+..    ++.     ..+..-++.|++|+...|.+++++|.+.|..++..+..    
T Consensus        29 ~~~~~~g~~gvliv~~~--~--d~~~----~~~-----~~~~~~~~~rv~pv~~~~~~dldeI~~~~~~l~~~~i~----   91 (175)
T COG1818          29 AEPRPTGFPGVLIVESE--L--DEEE----ALE-----KLKEVPEVERVIPVEIEVETDLDEIEEAAAELAEEKIK----   91 (175)
T ss_pred             ccccccCCceEEEEEcc--C--cHHH----HHH-----HhcCCCceeeEEEEEeeccCCHHHHHHHHHHHHhcccC----
Confidence            34556788899999872  2  3222    122     13467788999999999999999999999999998764    


Q ss_pred             cCCCCeeeEEEeeccCchhhccCCCCCCCCCccccCCChHHHHHHHHHHhhhcCCCCeeeCCCCCeEEEEEEeecCCCCC
Q 026557          123 KLSRPVKFAVGYNRRGFEEKQNKIPKDTKDSDVSALLDRNKCFTIVAAAVKEVVSDSAVDLKSPELSVLVELLPISGLPS  202 (237)
Q Consensus       123 ~~~~p~kFAI~~~~Rn~e~~~~~~~~~~~~~~~n~~L~R~~vI~~VA~~V~~~~~~hkVDLknPd~~IlVEV~k~~g~~~  202 (237)
                         ...+|||+-++|+                 .-.+.--++=-.+.++|+. ..+..|||+|||++|-|||++      
T Consensus        92 ---~~~tFaVr~~rRG-----------------~~~f~s~~~~v~vg~~v~~-~tg~~VdL~~Pd~vv~Vevl~------  144 (175)
T COG1818          92 ---EGKTFAVRTKRRG-----------------KHDFTSRDVEVVVGEAVKK-ATGAEVDLEDPDKVVWVEVLG------  144 (175)
T ss_pred             ---CCCeEEEEEeecC-----------------CCCccccceeehhHHHHHH-HhCCcccCCCCCEEEEEEEec------
Confidence               3449999999999                 2222222222223334443 247899999999999999997      


Q ss_pred             cccEEEEEeeCCcccccccce
Q 026557          203 ELLVVGVSILPQKLVTTKPRL  223 (237)
Q Consensus       203 ~~~vcgvSVv~~y~~~~K~~l  223 (237)
                        ..+||||+|+.+...|+++
T Consensus       145 --~~a~Isv~~~~~e~~k~~~  163 (175)
T COG1818         145 --DRAGISVLPGEKEEKKIKL  163 (175)
T ss_pred             --CcceEEEeCchhhhhhccc
Confidence              6799999998877777644

>PRK01565 thiamine biosynthesis protein ThiI; Provisional

Probab=98.64  E-value=2.3e-07  Score=88.06  Aligned_cols=111  Identities=14%  Similarity=0.183  Sum_probs=84.7

Q ss_pred             CeEEEEEeCCCCCCChHHHHHHHHHHhhcCCCCCCceeEeecccceeeecCHHHHHHHHHHHHHhhcccccccCCCCeee
Q 026557           51 NGLLLLTFPREHSPNTINIVSNIFQSLGSGSLKSPVWCHRIFPIQATCVLKEKELQATVSKLVLQFVNDEQNKLSRPVKF  130 (237)
Q Consensus        51 ~g~vFi~t~~~~~~dP~~lV~~I~~D~~~~~~k~tRfi~RL~PI~~TC~A~~~eI~~~a~~ll~~~f~~~~~~~~~p~kF  130 (237)
                      .+-+|+.+. +.  ++.++.. .+.        +.==|+.+.|+.. |..++++|.+.+..++..+..       +..+|
T Consensus        46 ~~r~~v~~~-~~--~~~~~~~-~l~--------~vfGI~~~s~~~~-~~~~~e~I~~~~~~~~~~~~~-------~~~tF  105 (394)
T PRK01565         46 RDRMYIELN-GE--DYEEVIE-RLK--------KVFGIQSFSPVYK-VEKDLEAIKEAALELLKEVYK-------EGKTF  105 (394)
T ss_pred             CCEEEEEeC-Cc--CHHHHHH-HHh--------hCCCcceEEEEEE-ECCCHHHHHHHHHHHHHhhcc-------CCCcE
Confidence            467888863 22  5554433 222        2333667778874 789999999999998887642       22489


Q ss_pred             EEEeeccCchhhccCCCCCCCCCcccc-CCChHHHHHHHHHHhhhcCCCCeeeCCCCCeEEEEEEeecC
Q 026557          131 AVGYNRRGFEEKQNKIPKDTKDSDVSA-LLDRNKCFTIVAAAVKEVVSDSAVDLKSPELSVLVELLPIS  198 (237)
Q Consensus       131 AI~~~~Rn~e~~~~~~~~~~~~~~~n~-~L~R~~vI~~VA~~V~~~~~~hkVDLknPd~~IlVEV~k~~  198 (237)
                      ||+.+|++                 +. .++.+++-..|++.|....++.+|||+|||+.|.|||.+..
T Consensus       106 ~Vr~rR~~-----------------k~f~~tS~ei~r~vG~~I~~~~~~~~VdL~nPd~~i~vei~~~~  157 (394)
T PRK01565        106 KVEARRSD-----------------KSFPLDSMELNRELGAYILENFPNLKVDVKNPDVTLRVEVRKEA  157 (394)
T ss_pred             EEEEEECC-----------------CCCCCChHHHHHHHHHHHHhhCCCCcccccCCCeEEEEEEEcCe
Confidence            99999999                 67 89999999999999987655689999999999999998763

>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional

Probab=98.44  E-value=1.9e-06  Score=83.75  Aligned_cols=124  Identities=15%  Similarity=0.180  Sum_probs=93.7

Q ss_pred             CceeEeecccceeeecCHHHHHHHHHHHHHhhcccccccCCCCeeeEEEeeccCchhhccCCCCCCCCCccccCCChHHH
Q 026557           85 PVWCHRIFPIQATCVLKEKELQATVSKLVLQFVNDEQNKLSRPVKFAVGYNRRGFEEKQNKIPKDTKDSDVSALLDRNKC  164 (237)
Q Consensus        85 tRfi~RL~PI~~TC~A~~~eI~~~a~~ll~~~f~~~~~~~~~p~kFAI~~~~Rn~e~~~~~~~~~~~~~~~n~~L~R~~v  164 (237)
                      .==++++.|+..++..++++|.+.+..++..++.        ..+|||+.++++                 ...++-+++
T Consensus        70 vfGi~~~~~v~~~~~~~~e~I~~~a~~~~~~~~~--------~~tF~VrarR~~-----------------k~~~~S~ei  124 (482)
T PRK01269         70 IPGIHHFLEVEEYPFTDLHDIFEKALALYREQLE--------GKTFCVRVKRRG-----------------KHDFTSIDV  124 (482)
T ss_pred             CCCceEEEEEEEECCCCHHHHHHHHHHHHHHhcC--------CCeEEEEEEeCC-----------------CCCCChHHH
Confidence            3346788999998889999999999998888763        128999999998                 558889999


Q ss_pred             HHHHHHHhhhcCCCCeeeCCCCCeEEEEEEeecC------------CCCCcccEEEEEeeCC--------ccccccccee
Q 026557          165 FTIVAAAVKEVVSDSAVDLKSPELSVLVELLPIS------------GLPSELLVVGVSILPQ--------KLVTTKPRLS  224 (237)
Q Consensus       165 I~~VA~~V~~~~~~hkVDLknPd~~IlVEV~k~~------------g~~~~~~vcgvSVv~~--------y~~~~K~~l~  224 (237)
                      -..|++.+.....+.+|||+|||+.|.|||.+..            |.|.|++=-.+.++.+        |+. .|...-
T Consensus       125 ~r~vG~~I~~~~~~~~VdL~nPD~~i~VeI~~d~~yv~~~~~~g~gGlP~g~~gk~lvllSGGiDS~va~~~~-~krG~~  203 (482)
T PRK01269        125 ERYVGGGLNQHIESAGVDLKNPDVTVHLEIRDDRLYLVTERHEGLGGFPLGTQEDVLSLISGGFDSGVASYML-MRRGSR  203 (482)
T ss_pred             HHHHHHHHHHhCCCCceeCCCCCEEEEEEEECCEEEEEEeeeecCCCCCccccCeEEEEEcCCchHHHHHHHH-HHcCCE
Confidence            9999999874445689999999999999998853            6676655444444432        332 234556


Q ss_pred             eeeeccCCCc
Q 026557          225 IRALVSGTNA  234 (237)
Q Consensus       225 ~~al~~~~~~  234 (237)
                      |.||..+.++
T Consensus       204 v~~l~f~~g~  213 (482)
T PRK01269        204 VHYCFFNLGG  213 (482)
T ss_pred             EEEEEEecCC
Confidence            7788776654

>PRK08384 thiamine biosynthesis protein ThiI; Provisional

Probab=98.21  E-value=1.4e-05  Score=76.14  Aligned_cols=89  Identities=20%  Similarity=0.160  Sum_probs=69.9

Q ss_pred             eEeecccceeeecCHHHHHHHHHHHHHhhcccccccCCCCeeeEEEeeccCchhhccCCCCCCCCCcccc-CCChHHHHH
Q 026557           88 CHRIFPIQATCVLKEKELQATVSKLVLQFVNDEQNKLSRPVKFAVGYNRRGFEEKQNKIPKDTKDSDVSA-LLDRNKCFT  166 (237)
Q Consensus        88 i~RL~PI~~TC~A~~~eI~~~a~~ll~~~f~~~~~~~~~p~kFAI~~~~Rn~e~~~~~~~~~~~~~~~n~-~L~R~~vI~  166 (237)
                      |..+.|+.. |..++++|.+.|..++..++....   ....+|+|..+|++                 .+ .++.+++=.
T Consensus        72 I~~~s~~~~-~~~~~~~i~~~~~~~~~~~~~~~~---~~~~tF~V~~rR~~-----------------k~f~~tS~ei~~  130 (381)
T PRK08384         72 IVSLSPAME-IDAELEKINRTALKLFRRKKRELE---LEKPRFRVTARRIT-----------------KEFPLKSPEIQA  130 (381)
T ss_pred             ceeEEEEEE-eCCCHHHHHHHHHHHHHHhhhccc---ccCCeEEEEEEeCC-----------------CCCCCChHHHHH
Confidence            456666654 457899999999999988764211   01248999999988                 43 689999999


Q ss_pred             HHHHHhhhcCCCCeeeCCCCCeEEEEEEeecC
Q 026557          167 IVAAAVKEVVSDSAVDLKSPELSVLVELLPIS  198 (237)
Q Consensus       167 ~VA~~V~~~~~~hkVDLknPd~~IlVEV~k~~  198 (237)
                      .|++.|... .+.+|||+|||+.|.|||-+..
T Consensus       131 ~vG~~i~~~-~~~~Vdl~~Pd~~i~vEir~~~  161 (381)
T PRK08384        131 KVGEYILEN-EESEVDLHNYDIEVGVELMEGK  161 (381)
T ss_pred             HHHHHHHhc-CCCCccCcCCCEEEEEEEEeCe
Confidence            999999764 4689999999999999997763

>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI

Probab=98.08  E-value=2.9e-05  Score=73.23  Aligned_cols=82  Identities=24%  Similarity=0.332  Sum_probs=63.6

Q ss_pred             eecccceeeecCHHHHHHHHHHHHHhhcccccccCCCCeeeEEEeeccCchhhccCCCCCCCCCcccc-CCChHHHHHHH
Q 026557           90 RIFPIQATCVLKEKELQATVSKLVLQFVNDEQNKLSRPVKFAVGYNRRGFEEKQNKIPKDTKDSDVSA-LLDRNKCFTIV  168 (237)
Q Consensus        90 RL~PI~~TC~A~~~eI~~~a~~ll~~~f~~~~~~~~~p~kFAI~~~~Rn~e~~~~~~~~~~~~~~~n~-~L~R~~vI~~V  168 (237)
                      .+-|+. .|..++++|. .+..++..+...       ..+|||+.+|++                 .+ .++.+++-..|
T Consensus        71 ~~s~~~-~~~~~~~~i~-~~~~~~~~~~~~-------~~tF~Vr~kR~~-----------------k~f~~~S~ei~r~~  124 (371)
T TIGR00342        71 SFSPAF-KCDLPFDEIH-ILLKALKQLRKE-------GKTFKVRTKRRG-----------------KDFPLNSVEVNKYV  124 (371)
T ss_pred             EEEEEE-EECCCHHHHH-HHHHHHHHhhcc-------CCcEEEEEEECC-----------------CCCCCChHHHHHHH
Confidence            344433 4577899999 777888776532       238999999998                 42 46699999999


Q ss_pred             HHHhhhcCCCCeeeCCCCCeEEEEEEeecC
Q 026557          169 AAAVKEVVSDSAVDLKSPELSVLVELLPIS  198 (237)
Q Consensus       169 A~~V~~~~~~hkVDLknPd~~IlVEV~k~~  198 (237)
                      ++.|... .+.+|||+|||+.|-|||.+..
T Consensus       125 G~~i~~~-~~~~VdL~nPd~~i~vei~~~~  153 (371)
T TIGR00342       125 GGGIVEK-IGLKVDLTNPDITVHIEIREDE  153 (371)
T ss_pred             HHHHHHH-cCCcccccCCCEEEEEEEECCE
Confidence            9999764 3489999999999999998753

The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.

>COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism]

Probab=97.80  E-value=0.00017  Score=68.95  Aligned_cols=101  Identities=19%  Similarity=0.199  Sum_probs=72.5

Q ss_pred             eEeecccceeeecCHHHHHHHHHHHHHhhcccccccCCCCeeeEEEeeccCchhhccCCCCCCCCCccc-cCCChHHHHH
Q 026557           88 CHRIFPIQATCVLKEKELQATVSKLVLQFVNDEQNKLSRPVKFAVGYNRRGFEEKQNKIPKDTKDSDVS-ALLDRNKCFT  166 (237)
Q Consensus        88 i~RL~PI~~TC~A~~~eI~~~a~~ll~~~f~~~~~~~~~p~kFAI~~~~Rn~e~~~~~~~~~~~~~~~n-~~L~R~~vI~  166 (237)
                      |+-+.|+.. |..+.+++...+..++...+.  +     ..+|+|..+|++                 . =.++-.++=.
T Consensus        70 I~s~sp~~~-v~~~~~~i~~~~~~~~~~~~~--~-----g~tF~V~arR~~-----------------k~f~~~S~ev~~  124 (383)
T COG0301          70 IVSFSPAME-VEASLEEIIKAALLALRRKYK--E-----GKTFKVRARRAG-----------------KEFPFTSLEVNR  124 (383)
T ss_pred             cceeceeEE-ecCCcHHHHHHHHHHHHHhhh--c-----CCeEEEEEEeCC-----------------CCCCCCHHHHHH
Confidence            445556544 455666666666566655543  2     239999999999                 4 5788899999


Q ss_pred             HHHHHhhhcCCCCeeeCCCCCeEEEEEEeecC------------CCCCcccEEEEEeeC
Q 026557          167 IVAAAVKEVVSDSAVDLKSPELSVLVELLPIS------------GLPSELLVVGVSILP  213 (237)
Q Consensus       167 ~VA~~V~~~~~~hkVDLknPd~~IlVEV~k~~------------g~~~~~~vcgvSVv~  213 (237)
                      .|++.|....++.+|||+|||++|.|||-...            |.|.|++==.++.|.
T Consensus       125 ~vG~~i~~~~~~~~Vdl~~Pdv~i~iEIr~~~ayi~~~~~~G~GGLPvGt~Gk~l~LlS  183 (383)
T COG0301         125 YVGEAILENIESAGVDLKNPDVEIHIEIREDKAYIYTERIKGPGGLPVGTQGKVLLLLS  183 (383)
T ss_pred             HHHHHHHhhcccceeecCCCCeEEEEEEecCeEEEEEeeeccCCCCccccCCcEEEEEe
Confidence            99999987657899999999999999998533            566665555555443

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=93.35  E-value=0.55  Score=43.30  Aligned_cols=73  Identities=21%  Similarity=0.187  Sum_probs=49.6

Q ss_pred             eeecCHHHHHHHHHHHHHhhcccccccCCCCeeeEEEeeccCchhhccCCCCCCCCCccccCCChHHHHHHHHHHhhhcC
Q 026557           97 TCVLKEKELQATVSKLVLQFVNDEQNKLSRPVKFAVGYNRRGFEEKQNKIPKDTKDSDVSALLDRNKCFTIVAAAVKEVV  176 (237)
Q Consensus        97 TC~A~~~eI~~~a~~ll~~~f~~~~~~~~~p~kFAI~~~~Rn~e~~~~~~~~~~~~~~~n~~L~R~~vI~~VA~~V~~~~  176 (237)
                      .|..+.++|.+.+..+--..+.        ..+|+|..+.++                 +...++..+-+++++.+... 
T Consensus        61 ~~~~~~~~l~~~~~~~~~~~~~--------~~sf~v~~~~~~-----------------~~~~~~~~~~~~ig~~i~~~-  114 (329)
T TIGR01177        61 YDTCAAKDLYDFVAGLEASDLD--------RKSFAVRVRDLR-----------------GYSVDKARLERKIGAILKKK-  114 (329)
T ss_pred             hcCCCHHHHHHHHhhcchhhcc--------CCeEEEEEEecC-----------------CCCCCHHHHHHHHHHHHHhc-
Confidence            4445667787776643222221        148999998887                 44666766666687777542 


Q ss_pred             CCCeeeCCCCCeEEEEEEee
Q 026557          177 SDSAVDLKSPELSVLVELLP  196 (237)
Q Consensus       177 ~~hkVDLknPd~~IlVEV~k  196 (237)
                       +.+|||+|||..|.|.+.+
T Consensus       115 -g~~v~l~~Pd~~i~v~~~~  133 (329)
T TIGR01177       115 -GFKVSLRRPDIVVRVVITE  133 (329)
T ss_pred             -CCccccCCCCeEEEEEEEC
Confidence             3599999999999998865

This family is found exclusively in the Archaea.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=83.97  E-value=20  Score=36.83  Aligned_cols=145  Identities=15%  Similarity=0.094  Sum_probs=79.5

Q ss_pred             ccccccccCChHHHHHhhhhhhccccCccccCCCCcccCceeeecCCCeEEEEEeCCCCCCChHHHHHHHHHHhhcCCCC
Q 026557            4 KCADGAEINSIEEDSAGGLQKNECHSSVKTDTNTETDFDMSLVKLTRNGLLLLTFPREHSPNTINIVSNIFQSLGSGSLK   83 (237)
Q Consensus         4 ~~~~~~~~~sie~~i~~el~~~~~~~~~~~~~~~~~~~~f~~Vkl~~~g~vFi~t~~~~~~dP~~lV~~I~~D~~~~~~k   83 (237)
                      .|..+     +|+-+++||..|-.                ..++. .+|=|++..      ++..+ .++.-    ....
T Consensus         7 ~~~~G-----lE~~l~~El~~lg~----------------~~~~~-~~ggV~f~g------~~~~~-~~~nl----~~R~   53 (702)
T PRK11783          7 SCAKG-----LEELLKDELEALGA----------------SECKV-VQGGVHFEG------DLELA-YRSCL----WSRL   53 (702)
T ss_pred             ECCcc-----HHHHHHHHHHhcCC----------------cccEE-EcCEEEEEe------CHHHH-HHHHH----Hhcc
Confidence            46655     68888999998732                11222 244466664      34443 33432    1233


Q ss_pred             CCceeEeecccceeeecCHHHHHHHHHHHH-HhhcccccccCCCCeeeEEEeeccCchhhccCCCCCCCCCccccCCChH
Q 026557           84 SPVWCHRIFPIQATCVLKEKELQATVSKLV-LQFVNDEQNKLSRPVKFAVGYNRRGFEEKQNKIPKDTKDSDVSALLDRN  162 (237)
Q Consensus        84 ~tRfi~RL~PI~~TC~A~~~eI~~~a~~ll-~~~f~~~~~~~~~p~kFAI~~~~Rn~e~~~~~~~~~~~~~~~n~~L~R~  162 (237)
                      .+|-+.+|-...  | .+.++|.+.++.+- ..||.       ...+|+|....+++.             ..++..--.
T Consensus        54 A~RVll~l~~f~--a-~~~~~Ly~~v~~i~W~~~l~-------~~~tf~V~~~~~~s~-------------l~~~~~~~~  110 (702)
T PRK11783         54 ASRILLPLAEFK--V-YSDLDLYLGVQAIDWTEHFS-------PDKTFAVDFSGTNDE-------------IRNTQFGAL  110 (702)
T ss_pred             hhheEEEeeeee--c-CCHHHHHHHHHcCCHHHhCC-------CCCeEEEEEEEecCC-------------ccCcHHHHH
Confidence            556666664322  2 27888887776531 12333       224899998876610             001111122


Q ss_pred             HHHHHHHHHhhhcC-CCCeeeCCCCCeEEEEEEeecCCCCCcccEEEEEee
Q 026557          163 KCFTIVAAAVKEVV-SDSAVDLKSPELSVLVELLPISGLPSELLVVGVSIL  212 (237)
Q Consensus       163 ~vI~~VA~~V~~~~-~~hkVDLknPd~~IlVEV~k~~g~~~~~~vcgvSVv  212 (237)
                      .+-++|.+.+.... ..-.||+++||+.|.|.+.+        .-|.+|+=
T Consensus       111 ~vKdAI~d~~~~~~~~rp~vd~~~pdv~i~~~~~~--------~~~~l~ld  153 (702)
T PRK11783        111 KVKDAIVDRFRRKGGPRPSVDKEQPDIRINARLNK--------GEATISLD  153 (702)
T ss_pred             HHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEEEeC--------CEEEEEEE
Confidence            33344444443222 12379999999999999986        45666664

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=81.68  E-value=5.9  Score=38.30  Aligned_cols=100  Identities=16%  Similarity=0.126  Sum_probs=56.1

Q ss_pred             CceeEeecccceee-ecCHHHHHHHHHHH-HHhhcccccccCCCCeeeEEEeeccCchhhccCCCCCCCCCccccCCChH
Q 026557           85 PVWCHRIFPIQATC-VLKEKELQATVSKL-VLQFVNDEQNKLSRPVKFAVGYNRRGFEEKQNKIPKDTKDSDVSALLDRN  162 (237)
Q Consensus        85 tRfi~RL~PI~~TC-~A~~~eI~~~a~~l-l~~~f~~~~~~~~~p~kFAI~~~~Rn~e~~~~~~~~~~~~~~~n~~L~R~  162 (237)
                      +|-.+|+.=.-..| ..+.++|-+.+..+ ...||+..       .+|+|.++.=++...             ++..--.
T Consensus        53 sRta~Ri~i~l~~fk~~~~~dly~~v~~i~w~~~~~~~-------~tf~V~~~~~~~~~~-------------~s~~~a~  112 (381)
T COG0116          53 SRTASRILLPLGEFKAETLDDLYEAVKAINWEEYFPEG-------ATFAVRFRGVGSHLF-------------TSPDIAR  112 (381)
T ss_pred             HHHHHhhheeeeeeeeCCHHHHHHHhhcCCHHHhCCCC-------CEEEEEEEeccCCcc-------------ccHHHHH
Confidence            44455655444555 44578887655443 45567543       399999654441000             1111112


Q ss_pred             HHHHHHHHHhhh-cCCCCeeeCCCCCeEEEEEEeecCCCCCcccEEEEEee
Q 026557          163 KCFTIVAAAVKE-VVSDSAVDLKSPELSVLVELLPISGLPSELLVVGVSIL  212 (237)
Q Consensus       163 ~vI~~VA~~V~~-~~~~hkVDLknPd~~IlVEV~k~~g~~~~~~vcgvSVv  212 (237)
                      .+=++|.+.... ....-.|||..||+.|=|++.+        ..|-|+|=
T Consensus       113 ~vkdAIvd~~~~~~~~r~~v~~~~Pdv~i~v~l~~--------~~~~l~iD  155 (381)
T COG0116         113 IVKDAIVDRFRRKYGRRPSVDLDGPDVRINVELDK--------DTATLGID  155 (381)
T ss_pred             HHHHHHHHHHhhccCCCCCccccCCCeEEEEEEEc--------CEEEEEEe
Confidence            222333333332 2233489999999999999997        55666664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	237
2dir_A	98	Thump domain-containing protein 1; structural geno	8e-10

>2dir_A Thump domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.308.1.3 Length = 98

 Score = 53.7 bits (129), Expect = 8e-10
 Identities = 16/119 (13%), Positives = 41/119 (34%), Gaps = 30/119 (25%)

Query: 96  ATCVLKEKELQATVSKLVLQFVNDEQNKLSRPVKFAVGYNRRGFEEKQNKIPKDTKDSDV 155
           ++     ++++      +  +             F + Y  R                  
Sbjct: 5   SSGKAFLEDMKKYAETFLEPWFKAPN-----KGTFQIVYKSRNNSH-------------- 45

Query: 156 SALLDRNKCFTIVAAAVKEVVSDSAVDLKSPELSVLVELLPISGLPSELLVVGVSILPQ 214
              ++R +    +A  V  + S++ VDL +P+ +V+VE++          V  +S++  
Sbjct: 46  ---VNREEVIRELAGIVCTLNSENKVDLTNPQYTVVVEIIKA--------VCCLSVVKS 93

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	237
2dir_A	98	Thump domain-containing protein 1; structural geno	99.81
2c5s_A	413	THII, probable thiamine biosynthesis protein THII;	98.56
1vbk_A	307	Hypothetical protein PH1313; structural genomics,	98.38
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	96.41
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	95.8
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	95.65
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	95.32
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	94.98
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	94.43

>2dir_A Thump domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.308.1.3

Probab=99.81  E-value=1.4e-19  Score=138.95  Aligned_cols=94  Identities=17%  Similarity=0.297  Sum_probs=84.8

Q ss_pred             ceeeecCHHHHHHHHHHHHHhhcccccccCCCCeeeEEEeeccCchhhccCCCCCCCCCccccCCChHHHHHHHHHHhhh
Q 026557           95 QATCVLKEKELQATVSKLVLQFVNDEQNKLSRPVKFAVGYNRRGFEEKQNKIPKDTKDSDVSALLDRNKCFTIVAAAVKE  174 (237)
Q Consensus        95 ~~TC~A~~~eI~~~a~~ll~~~f~~~~~~~~~p~kFAI~~~~Rn~e~~~~~~~~~~~~~~~n~~L~R~~vI~~VA~~V~~  174 (237)
                      +.+|.+++++|.+.|..++.+||+..     ++.||||+++||+                 ++.+++++++..|+++|..
T Consensus         4 ~~~~~~~~e~I~~~a~~~~~~~f~~~-----~~~TF~V~~kR~~-----------------k~~~~S~ei~~~vG~~i~~   61 (98)
T 2dir_A            4 GSSGKAFLEDMKKYAETFLEPWFKAP-----NKGTFQIVYKSRN-----------------NSHVNREEVIRELAGIVCT   61 (98)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHHHSTT-----CCCEEEEEEECSS-----------------CCSSCHHHHHHHHHHHHHH
T ss_pred             eEEEECCHHHHHHHHHHHHHHhcCcC-----CCceEEEEEEeCC-----------------CCCCCHHHHHHHHHHHHHh
Confidence            57899999999999999999998532     2359999999999                 7799999999999999998


Q ss_pred             cCCCCeeeCCCCCeEEEEEEeecCCCCCcccEEEEEeeCCcccc
Q 026557          175 VVSDSAVDLKSPELSVLVELLPISGLPSELLVVGVSILPQKLVT  218 (237)
Q Consensus       175 ~~~~hkVDLknPd~~IlVEV~k~~g~~~~~~vcgvSVv~~y~~~  218 (237)
                      ..++++|||+|||++|.|||.+        ..|+|||+++|+.+
T Consensus        62 ~~~~~kVdL~nPd~~I~VEI~~--------~~~~isv~~~y~~~   97 (98)
T 2dir_A           62 LNSENKVDLTNPQYTVVVEIIK--------AVCCLSVVKSGPSS   97 (98)
T ss_dssp             HCTTCEECSSSCSEEEEEEEET--------TEEEEEEEECCCTT
T ss_pred             hCCCCeeEcCCCCEEEEEEEeC--------CEEEEEEccccccC
Confidence            7778999999999999999996        78999999999753

>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1

Probab=98.56  E-value=8.9e-07  Score=82.82  Aligned_cols=109  Identities=14%  Similarity=0.184  Sum_probs=86.9

Q ss_pred             CeEEEEEeCCCCCCChHHHHHHHHHHhhcCCCCCCceeEeecccceeeecCHHHHHHHHHHHHHhhcccccccCCCCeee
Q 026557           51 NGLLLLTFPREHSPNTINIVSNIFQSLGSGSLKSPVWCHRIFPIQATCVLKEKELQATVSKLVLQFVNDEQNKLSRPVKF  130 (237)
Q Consensus        51 ~g~vFi~t~~~~~~dP~~lV~~I~~D~~~~~~k~tRfi~RL~PI~~TC~A~~~eI~~~a~~ll~~~f~~~~~~~~~p~kF  130 (237)
                      .|.+||.+..+   ++.+++.++         ++.=.|+++.|+.. |..++++|.+.|..++..++.       +..||
T Consensus        57 ~gri~v~~~~~---~~~~~~~~L---------~~vfGI~~~~~v~~-~~~dle~I~~~~~~~~~~~~~-------~~~tF  116 (413)
T 2c5s_A           57 HDRMYIQLNGE---DHEAVSERL---------KDVFGIHKFNLAMK-VPSELEDIKKGALAAFLQVKG-------DVKTF  116 (413)
T ss_dssp             SSCEEEECTTC---CHHHHHHHH---------TTCTTEEEEEEEEE-EESSHHHHHHHHHHHHHTCCS-------CCCEE
T ss_pred             CCEEEEEeCCC---CHHHHHHHH---------hhCCCeEEEEEEEE-ecCCHHHHHHHHHHHHHhhcc-------CCCcE
Confidence            47789987422   566655543         24556889999877 468999999999888876543       22399


Q ss_pred             EEEeeccCchhhccCCCCCCCCCcccc-CCChHHHHHHHHHHhhhcCCCCeeeCCCCCeEEEEEEee
Q 026557          131 AVGYNRRGFEEKQNKIPKDTKDSDVSA-LLDRNKCFTIVAAAVKEVVSDSAVDLKSPELSVLVELLP  196 (237)
Q Consensus       131 AI~~~~Rn~e~~~~~~~~~~~~~~~n~-~L~R~~vI~~VA~~V~~~~~~hkVDLknPd~~IlVEV~k  196 (237)
                      +|..+|++                 .. .++.+++-..|++.|....++.+|||+|||+.|-|||.+
T Consensus       117 ~V~~kR~~-----------------k~f~~~S~ei~r~vG~~i~~~~~~~~Vdl~~Pdi~i~vEI~~  166 (413)
T 2c5s_A          117 KITVHRSY-----------------KHFPMRTMELLPEIGGHILENTEDITVDVHNPDVNVRVEIRS  166 (413)
T ss_dssp             EEEEEECC-----------------TTCSSCHHHHHHHHHHHHHTTSSSCEECSSSCSEEEEEEECS
T ss_pred             EEEEEECC-----------------CCCCCChHHHHHHHHHHHHHhCCCCeeccCCCCeEEEEEEEe
Confidence            99999999                 55 899999999999999987668899999999999999976

>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1

Probab=98.38  E-value=2e-06  Score=77.76  Aligned_cols=129  Identities=17%  Similarity=0.144  Sum_probs=92.5

Q ss_pred             CeEEEEEeCCCCCCChHHHHHHHHHHhhcCCCCCCceeEeecccceeeecCHHHHHHHHHHHHHhhcccccccCCCCeee
Q 026557           51 NGLLLLTFPREHSPNTINIVSNIFQSLGSGSLKSPVWCHRIFPIQATCVLKEKELQATVSKLVLQFVNDEQNKLSRPVKF  130 (237)
Q Consensus        51 ~g~vFi~t~~~~~~dP~~lV~~I~~D~~~~~~k~tRfi~RL~PI~~TC~A~~~eI~~~a~~ll~~~f~~~~~~~~~p~kF  130 (237)
                      .|-+|+..   .  ++.+++.++         ++.=-|+++.|+.. |..++++|.+.|..++..++.. .+.  ...||
T Consensus        48 ~gri~V~~---~--~~~~~~~~L---------~~vfGI~~~s~v~~-~~~dle~I~~~~~~~~~~~~~~-~~~--~~~tF  109 (307)
T 1vbk_A           48 HGRIIVKT---N--SPKEAANVL---------VRVFGIVSISPAME-VEASLEKINRTALLMFRKKAKE-VGK--ERPKF  109 (307)
T ss_dssp             TTEEEEEC---S--CHHHHHHHH---------TTSTTEEEEEEEEE-EECCHHHHHHHHHHHHHHHHHH-HTC--SSCEE
T ss_pred             CCEEEEEc---C--CHHHHHHHH---------hhcCCeEEEEEEEE-eCCCHHHHHHHHHHHHHHhhcc-cCC--CCceE
Confidence            57788862   2  677655544         23456888899987 5689999999998888764321 010  11399


Q ss_pred             EEEeeccCchhhccCCCCCCCCCccccCCChHHHHHHHHHHhhhcCCCCeeeCCCCCeEEEEEEeecC------------
Q 026557          131 AVGYNRRGFEEKQNKIPKDTKDSDVSALLDRNKCFTIVAAAVKEVVSDSAVDLKSPELSVLVELLPIS------------  198 (237)
Q Consensus       131 AI~~~~Rn~e~~~~~~~~~~~~~~~n~~L~R~~vI~~VA~~V~~~~~~hkVDLknPd~~IlVEV~k~~------------  198 (237)
                      +|..+|++.                +-.++.+++-..|++.|.... +.+|||+|||++|.|||....            
T Consensus       110 ~Vr~kR~~k----------------~~~~~S~ei~r~vG~~i~~~~-~~~Vdl~~PD~~i~VEi~~~~~yv~~~~~~g~G  172 (307)
T 1vbk_A          110 RVTARRITK----------------EFPLDSLEIQAKVGEYILNNE-NCEVDLKNYDIEIGIEIMQGKAYIYTEKIKGWG  172 (307)
T ss_dssp             EEEEEESSS----------------CSSSCHHHHHHHHHHHHHHHS-SCEECSSSCSEEEEEEEETTEEEEESCCEECCC
T ss_pred             EEEEEeCCC----------------CCCCChHHHHHHHHHHHHHHh-CCceeeeCCCEEEEEEEEcCeEEEEEeccccCC
Confidence            999999981                346889999999999998654 689999999999999998752            


Q ss_pred             CCCCcccEEEEEeeCC
Q 026557          199 GLPSELLVVGVSILPQ  214 (237)
Q Consensus       199 g~~~~~~vcgvSVv~~  214 (237)
                      |.|.|.+--.+..+.+
T Consensus       173 GlP~g~~~kvlvllSG  188 (307)
T 1vbk_A          173 GLPIGTEGRMIGILHD  188 (307)
T ss_dssp             SBCTTTTCEEEEECSS
T ss_pred             CCCcCCCCcEEEEEeC
Confidence            5566655333444444

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=96.41  E-value=0.0052  Score=54.98  Aligned_cols=126  Identities=17%  Similarity=0.113  Sum_probs=81.9

Q ss_pred             hHHHHHhhhhh-hccccCccccCCCCcccCceeeecCCCeEEEEEeCCCCCCChHHHHHHHHHHhhcCCCCCCceeEeec
Q 026557           14 IEEDSAGGLQK-NECHSSVKTDTNTETDFDMSLVKLTRNGLLLLTFPREHSPNTINIVSNIFQSLGSGSLKSPVWCHRIF   92 (237)
Q Consensus        14 ie~~i~~el~~-~~~~~~~~~~~~~~~~~~f~~Vkl~~~g~vFi~t~~~~~~dP~~lV~~I~~D~~~~~~k~tRfi~RL~   92 (237)
                      .|+-++.||.+ +-..       .      .+  -....|-+++.+..    ++..+             .+.|..+|+.
T Consensus        30 lE~~l~~El~~~lg~~-------~------~~--~~~~~g~v~~~~~~----~~~~~-------------~~lR~a~rvl   77 (354)
T 3tma_A           30 LEDLLLEELSALYPGE-------G------AE--VDARKGRVRIPRAW----VGEEA-------------LGLRLAHHLV   77 (354)
T ss_dssp             CHHHHHHHHHHHSCSS-------C------CE--EETTTTEEEEECSC----CCGGG-------------GGCSSCSCEE
T ss_pred             HHHHHHHHHHHHcCCc-------c------ce--eeecCCEEEEEecC----CHHHH-------------HhcCCccEEE
Confidence            68888999988 5321       0      11  11234667777632    22221             1266666666


Q ss_pred             ccceee--e-cC-HHHHHHHHHHHHHhhcccccccCCCCeeeEEEeeccCchhhccCCCCCCCCCccccCCChHHHHHHH
Q 026557           93 PIQATC--V-LK-EKELQATVSKLVLQFVNDEQNKLSRPVKFAVGYNRRGFEEKQNKIPKDTKDSDVSALLDRNKCFTIV  168 (237)
Q Consensus        93 PI~~TC--~-A~-~~eI~~~a~~ll~~~f~~~~~~~~~p~kFAI~~~~Rn~e~~~~~~~~~~~~~~~n~~L~R~~vI~~V  168 (237)
                      -+-..+  . .+ .++|.+.+..+--..+       .+..+|+|..++.+                 ...+...++-+.|
T Consensus        78 ~~~~~~~~~~~~~~~~L~~~~~~~~w~~~-------~~~~tF~V~~~~~~-----------------~~~f~s~~vk~~i  133 (354)
T 3tma_A           78 LFRARLLLSREDPLGALERAALALPWPEL-------EGAGSFRVEARREG-----------------EHPFTSPEVERRV  133 (354)
T ss_dssp             EEEEEEECCSSSHHHHHHHHHHTSCCTTH-------HHHCCEEEEEEEES-----------------CCSSCHHHHHHHH
T ss_pred             EEeeeccCCchhhHHHHHHHHHhCchhhc-------CCCCCEEEEEEEcC-----------------CCCCCHHHHHHHH
Confidence            555555  3 36 7888877754321111       12348999999888                 5678889999999


Q ss_pred             HHHhhhcCCCCeeeCCCCCeEEEEEEee
Q 026557          169 AAAVKEVVSDSAVDLKSPELSVLVELLP  196 (237)
Q Consensus       169 A~~V~~~~~~hkVDLknPd~~IlVEV~k  196 (237)
                      ...+.... +.+|||++||+.|-|++.+
T Consensus       134 ~~~l~~~~-g~~v~~~~pd~~i~v~i~~  160 (354)
T 3tma_A          134 GEALHRAY-GVPVDLKRPAVRVRVDVRG  160 (354)
T ss_dssp             HHHHHHHH-CCCBCSSSCSEEEEEEEET
T ss_pred             HHHHHHhh-CCcccCCCCCEEEEEEEEC
Confidence            98887532 4559999999999999986

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=95.80  E-value=0.022  Score=52.71  Aligned_cols=140  Identities=16%  Similarity=0.095  Sum_probs=82.3

Q ss_pred             CccccccccCChHHHHHhhhhhhccccCccccCCCCcccCceeeecCCCeEEEEEeCCCCCCChHHHHHHHHHHhhcCCC
Q 026557            3 GKCADGAEINSIEEDSAGGLQKNECHSSVKTDTNTETDFDMSLVKLTRNGLLLLTFPREHSPNTINIVSNIFQSLGSGSL   82 (237)
Q Consensus         3 ~~~~~~~~~~sie~~i~~el~~~~~~~~~~~~~~~~~~~~f~~Vkl~~~g~vFi~t~~~~~~dP~~lV~~I~~D~~~~~~   82 (237)
                      +.|.-+     .|+-++.||.++-.                 -++.. +|-|++..      |...+ .+++--      
T Consensus        19 at~~~G-----lE~~la~El~~lG~-----------------~v~~~-~g~V~f~g------~~~~~-~r~~l~------   62 (393)
T 3k0b_A           19 ATAASG-----LEAIVGKEVARLGY-----------------DPKVE-NGKVYFEG------DLSAI-ARANLW------   62 (393)
T ss_dssp             EECCTT-----CHHHHHHHHHHTTC-----------------CCEEE-TTEEEEEE------CHHHH-HHHHHH------
T ss_pred             EECCcc-----HHHHHHHHHHhCCC-----------------CcEEe-ccEEEEEE------CHHHH-HHHHhc------
Confidence            356655     68888999988621                 11222 35566665      34333 333221      


Q ss_pred             CCCceeEeecccceeee-cCHHHHHHHHHHH-HHhhcccccccCCCCeeeEEEeeccCchhhccCCCCCCCCCccccCCC
Q 026557           83 KSPVWCHRIFPIQATCV-LKEKELQATVSKL-VLQFVNDEQNKLSRPVKFAVGYNRRGFEEKQNKIPKDTKDSDVSALLD  160 (237)
Q Consensus        83 k~tRfi~RL~PI~~TC~-A~~~eI~~~a~~l-l~~~f~~~~~~~~~p~kFAI~~~~Rn~e~~~~~~~~~~~~~~~n~~L~  160 (237)
                        +|-..|++-+-..+. .+.++|.+.+..+ ...||..       ..+|||..++++                 +..+.
T Consensus        63 --~R~a~RVl~~l~~f~a~~~~~L~~~~~~i~w~~~l~~-------~~tF~V~~~~~~-----------------s~~fs  116 (393)
T 3k0b_A           63 --LRVADRVKIVVGVFKATTFDELFEKTKALPWEDYLPL-------DAQFPVAGKSVK-----------------STLYS  116 (393)
T ss_dssp             --CSSCSCEEEEEEEEECSSHHHHHHHHHTSCGGGTCCT-------TCBCCEEEEEES-----------------SSCCC
T ss_pred             --ccceeeEEEEEEEEecCCHHHHHHHHHhCCHHHhCCC-------CCeEEEEEEEec-----------------CCCCC
Confidence              233334443334443 4899999888775 4555642       348999987777                 45555


Q ss_pred             hHHHHH----HHHHHhhhc-CCCCeeeCCCCCeEEEEEEeecCCCCCcccEEEEEee
Q 026557          161 RNKCFT----IVAAAVKEV-VSDSAVDLKSPELSVLVELLPISGLPSELLVVGVSIL  212 (237)
Q Consensus       161 R~~vI~----~VA~~V~~~-~~~hkVDLknPd~~IlVEV~k~~g~~~~~~vcgvSVv  212 (237)
                      ..++-.    +|.+.+... ...-.||+++||+.|.|++..        ..|-+++=
T Consensus       117 s~~~~~~vkdAI~d~~~~~~~~rp~vd~~~Pd~~i~v~l~~--------~~~~~~ld  165 (393)
T 3k0b_A          117 VPDCQAIVKKAIVNRVSEKYRRSGRLMETGALFKLEVSILK--------DEVTLTID  165 (393)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCTTCCSCSSBCCEEEEEET--------TEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCEEEEEEEEC--------CEEEEEEe
Confidence            544433    333333332 122479999999999999986        56777765

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=95.65  E-value=0.16  Score=50.45  Aligned_cols=145  Identities=17%  Similarity=0.137  Sum_probs=85.6

Q ss_pred             CccccccccCChHHHHHhhhhhhccccCccccCCCCcccCceeeecCCCeEEEEEeCCCCCCChHHHHHHHHHHhhcCCC
Q 026557            3 GKCADGAEINSIEEDSAGGLQKNECHSSVKTDTNTETDFDMSLVKLTRNGLLLLTFPREHSPNTINIVSNIFQSLGSGSL   82 (237)
Q Consensus         3 ~~~~~~~~~~sie~~i~~el~~~~~~~~~~~~~~~~~~~~f~~Vkl~~~g~vFi~t~~~~~~dP~~lV~~I~~D~~~~~~   82 (237)
                      +.|.-+     +|+-++.||.+|-.                ..++..- |-|++..      |...+ .+++-       
T Consensus         7 a~~~~G-----lE~~l~~El~~lg~----------------~~~~~~~-g~V~f~g------~~~~~-~~~~l-------   50 (703)
T 3v97_A            7 ASTARG-----LEELLKTELENLGA----------------VECQVVQ-GGVHFKG------DTRLV-YQSLM-------   50 (703)
T ss_dssp             EECCTT-----CHHHHHHHHHHTTC----------------EEEEEET-TEEEEEE------CHHHH-HHHHH-------
T ss_pred             EECCCc-----HHHHHHHHHHhcCC----------------cccEEEC-CEEEEEe------CHHHH-HHHHH-------
Confidence            356655     68888999998632                2233333 4455554      34433 33322       


Q ss_pred             CCCceeEeecccceeee-cCHHHHHHHHHHH-HHhhcccccccCCCCeeeEEEeeccCchhhccCCCCCCCCCccccCCC
Q 026557           83 KSPVWCHRIFPIQATCV-LKEKELQATVSKL-VLQFVNDEQNKLSRPVKFAVGYNRRGFEEKQNKIPKDTKDSDVSALLD  160 (237)
Q Consensus        83 k~tRfi~RL~PI~~TC~-A~~~eI~~~a~~l-l~~~f~~~~~~~~~p~kFAI~~~~Rn~e~~~~~~~~~~~~~~~n~~L~  160 (237)
                       -+|-..|++=.-..+. .+.++|-+.++.+ ...||..       ..+|+|.++.+++.             -.|+...
T Consensus        51 -~~R~a~Rvl~~l~~f~~~~~~~L~~~~~~~~w~~~~~~-------~~tf~V~~~~~~~~-------------~~~~~~~  109 (703)
T 3v97_A           51 -WSRLASRIMLPLGECKVYSDLDLYLGVQAINWTEMFNP-------GATFAVHFSGLNDT-------------IRNSQYG  109 (703)
T ss_dssp             -HCSSCSEEEEEEEEEECSSHHHHHHHHHTSCHHHHBCT-------TCCEEEEEECCCSS-------------CCSHHHH
T ss_pred             -hhCceeEEEEEEEEEecCCHHHHHHHHHcCCHHHhCCC-------CceEEEEEEEecCC-------------cCChHHH
Confidence             1333344444444453 4889998888775 5566653       34899999877610             0012222


Q ss_pred             hHHHHHHHHHHhhhcC-CCCeeeCCCCCeEEEEEEeecCCCCCcccEEEEEee
Q 026557          161 RNKCFTIVAAAVKEVV-SDSAVDLKSPELSVLVELLPISGLPSELLVVGVSIL  212 (237)
Q Consensus       161 R~~vI~~VA~~V~~~~-~~hkVDLknPd~~IlVEV~k~~g~~~~~~vcgvSVv  212 (237)
                      -..+-++|...++... ..-.||+++||+.|.|.+.+        ..|-+|+=
T Consensus       110 ~~~vk~ai~d~~~~~~g~rp~v~~~~pd~~i~v~l~~--------~~~~l~ld  154 (703)
T 3v97_A          110 AMKVKDAIVDAFTRKNLPRPNVDRDAPDIRVNVWLHK--------ETASIALD  154 (703)
T ss_dssp             HHHHHHHHHHHHHTTTCCCCCBCSSSCSEEEEEEEET--------TEEEEEEE
T ss_pred             HHHHHHHHHHHHHHhhCCCCCCCCCCCCEEEEEEEEC--------CEEEEEEe
Confidence            2344556666655432 22469999999999999986        67888874

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=95.32  E-value=0.18  Score=46.26  Aligned_cols=140  Identities=14%  Similarity=0.156  Sum_probs=81.2

Q ss_pred             ccccccccCChHHHHHhhhhhhccccCccccCCCCcccCceeeecCCCeEEEEEeCCCCCCChHHHHHHHHHHhhcCCCC
Q 026557            4 KCADGAEINSIEEDSAGGLQKNECHSSVKTDTNTETDFDMSLVKLTRNGLLLLTFPREHSPNTINIVSNIFQSLGSGSLK   83 (237)
Q Consensus         4 ~~~~~~~~~sie~~i~~el~~~~~~~~~~~~~~~~~~~~f~~Vkl~~~g~vFi~t~~~~~~dP~~lV~~I~~D~~~~~~k   83 (237)
                      .|.-+     +|+-++.||.+|-.                ..++.. .|-|++..      |...+ .+++--       
T Consensus        12 t~~~G-----lE~~l~~El~~Lg~----------------~~~~~~-~g~V~f~g------~~~~~-~~~~l~-------   55 (385)
T 3ldu_A           12 PCFFG-----MEKMLAREITNLGY----------------EIIKTE-DGRITYKT------DEFGI-AKSNMW-------   55 (385)
T ss_dssp             ECCTT-----CHHHHHHHHHHTTC----------------EEEEEE-TTEEEEEE------CTTHH-HHHHHH-------
T ss_pred             ECChh-----HHHHHHHHHHhcCC----------------CceEEe-ccEEEEEE------CHHHH-HHHHhc-------
Confidence            45555     68889999998632                223333 34456664      22222 333221       


Q ss_pred             CCceeEeecccceee-ecCHHHHHHHHHHH-HHhhcccccccCCCCeeeEEE-eeccCchhhccCCCCCCCCCccccCCC
Q 026557           84 SPVWCHRIFPIQATC-VLKEKELQATVSKL-VLQFVNDEQNKLSRPVKFAVG-YNRRGFEEKQNKIPKDTKDSDVSALLD  160 (237)
Q Consensus        84 ~tRfi~RL~PI~~TC-~A~~~eI~~~a~~l-l~~~f~~~~~~~~~p~kFAI~-~~~Rn~e~~~~~~~~~~~~~~~n~~L~  160 (237)
                       +|-..|++=+-..+ ..+.++|.+.+..+ ...||..       ..+|+|. .++++                 +..+.
T Consensus        56 -~R~a~RVl~~l~~f~~~~~~~L~~~~~~i~w~~~~~~-------~~tf~V~~~~~~~-----------------s~~~~  110 (385)
T 3ldu_A           56 -LRCAERVHLKIAEFEAKSFDELFENTKRINWSRYIPY-------GAQFPISKASSIK-----------------SKLYS  110 (385)
T ss_dssp             -CSSCSCCEEEEEEEECSSHHHHHHHHHTSCGGGTSCT-------TCBCCEEEEEEES-----------------SSCCC
T ss_pred             -cCceeEEEEEeeeEecCCHHHHHHHHHhCCHHHhCCC-------CceEEEEeecccC-----------------CCcCc
Confidence             23333333323344 34899998888765 4556643       3489999 77777                 44455


Q ss_pred             hHHHHH----HHHHHhhhc-CCCCeeeCCCCCeEEEEEEeecCCCCCcccEEEEEee
Q 026557          161 RNKCFT----IVAAAVKEV-VSDSAVDLKSPELSVLVELLPISGLPSELLVVGVSIL  212 (237)
Q Consensus       161 R~~vI~----~VA~~V~~~-~~~hkVDLknPd~~IlVEV~k~~g~~~~~~vcgvSVv  212 (237)
                      ..++-.    +|++.+... ...-.||+++||+.|.|.+.+        ..|-+++=
T Consensus       111 ~~~~~~~vkdAIvd~~~~~~~~rp~v~~~~p~~~i~~~i~~--------~~~~~~lD  159 (385)
T 3ldu_A          111 TPDVQAIVKKAIVESLKKSYLEDGLLKEDKEKYPIFVFIHK--------DKVTISID  159 (385)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCSCCCCCSCBCCEEEEEET--------TEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCEEEEEEEEC--------CEEEEEEe
Confidence            433333    333333332 122479999999999999986        56777765

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=94.98  E-value=0.022  Score=52.63  Aligned_cols=140  Identities=19%  Similarity=0.118  Sum_probs=81.9

Q ss_pred             CccccccccCChHHHHHhhhhhhccccCccccCCCCcccCceeeecCCCeEEEEEeCCCCCCChHHHHHHHHHHhhcCCC
Q 026557            3 GKCADGAEINSIEEDSAGGLQKNECHSSVKTDTNTETDFDMSLVKLTRNGLLLLTFPREHSPNTINIVSNIFQSLGSGSL   82 (237)
Q Consensus         3 ~~~~~~~~~~sie~~i~~el~~~~~~~~~~~~~~~~~~~~f~~Vkl~~~g~vFi~t~~~~~~dP~~lV~~I~~D~~~~~~   82 (237)
                      +.|.-+     +|+-+++||.++-.                 -++.. +|-|++..      |...+ .+++-       
T Consensus         9 a~~~~G-----lE~~la~El~~lG~-----------------~~~~~-~g~V~f~g------d~~~~-~~~~l-------   51 (384)
T 3ldg_A            9 ATAAAG-----IEAVVGKELRNLGL-----------------DCQVE-NGRVLFKG------NIETI-AKSNL-------   51 (384)
T ss_dssp             EECCTT-----CHHHHHHHHHHTTC-----------------CCEEE-TTEEEEEE------CHHHH-HHHHH-------
T ss_pred             EECChh-----HHHHHHHHHHhCCC-----------------CcEEe-eeEEEEEE------CHHHH-HHHHh-------
Confidence            345555     68888899988621                 01111 35566665      34333 33322       


Q ss_pred             CCCceeEeecccceeeec-CHHHHHHHHHHH-HHhhcccccccCCCCeeeEE-EeeccCchhhccCCCCCCCCCccccCC
Q 026557           83 KSPVWCHRIFPIQATCVL-KEKELQATVSKL-VLQFVNDEQNKLSRPVKFAV-GYNRRGFEEKQNKIPKDTKDSDVSALL  159 (237)
Q Consensus        83 k~tRfi~RL~PI~~TC~A-~~~eI~~~a~~l-l~~~f~~~~~~~~~p~kFAI-~~~~Rn~e~~~~~~~~~~~~~~~n~~L  159 (237)
                       -+|-..|++-+-..+.+ +.++|.+.+..+ ...||..       ..+|+| ..++.+                 +..+
T Consensus        52 -~~R~a~RVl~~l~~f~a~~~~~Ly~~~~~i~W~~~l~~-------~~tf~V~~~~~~~-----------------s~~~  106 (384)
T 3ldg_A           52 -WLRSADRIKIVVGEFPARTFEELFQGVYALDWENYLPL-------GCQFPVAKAKSVK-----------------SKLH  106 (384)
T ss_dssp             -HCSSCSEEEEEEEEEECSSHHHHHHHHHHSCGGGTCCT-------TCBCCBCCCEEES-----------------CSCC
T ss_pred             -hcccceeEEEEEEEEecCCHHHHHHHHHcCCHHHhCCC-------CCeEEEEeeeecC-----------------CCCC
Confidence             13444455444445544 899999888775 4566643       348999 766666                 3334


Q ss_pred             ChHHH----HHHHHHHhhhcC-CCCe--eeCCCCCeEEEEEEeecCCCCCcccEEEEEee
Q 026557          160 DRNKC----FTIVAAAVKEVV-SDSA--VDLKSPELSVLVELLPISGLPSELLVVGVSIL  212 (237)
Q Consensus       160 ~R~~v----I~~VA~~V~~~~-~~hk--VDLknPd~~IlVEV~k~~g~~~~~~vcgvSVv  212 (237)
                      ...++    =++|.+.+.... ..-.  ||+++||+.|.|.+.+        ..|-+|+=
T Consensus       107 ~s~~~~~~vkdAi~d~~~~~~~~r~~~~v~~~~pd~~i~v~~~~--------~~~~~~ld  158 (384)
T 3ldg_A          107 NEPSIQGITKKAIVKKLQHYFHRPDSVPLPENGPEFKIEISLLK--------DQARVMID  158 (384)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTCCTTSCCCCCSCBCEEEEEEET--------TEEEEEEE
T ss_pred             CHHHHHHHHHHHHHHHHHHhhCCCCccccCCCCCCEEEEEEEEC--------CEEEEEEe
Confidence            43333    234444444321 1123  9999999999999986        56778775

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=94.43  E-value=0.19  Score=45.55  Aligned_cols=147  Identities=22%  Similarity=0.186  Sum_probs=84.7

Q ss_pred             hHHHHHhhhhhhccccCccccCCCCcccCce--eeecCCCeEEEEEeCCCCCCC-------hHHHHHHHHHHhhcCCCCC
Q 026557           14 IEEDSAGGLQKNECHSSVKTDTNTETDFDMS--LVKLTRNGLLLLTFPREHSPN-------TINIVSNIFQSLGSGSLKS   84 (237)
Q Consensus        14 ie~~i~~el~~~~~~~~~~~~~~~~~~~~f~--~Vkl~~~g~vFi~t~~~~~~d-------P~~lV~~I~~D~~~~~~k~   84 (237)
                      +|+-.+.||.++-.+      .+    -.|+  .+..+.+|-|++...... ..       ..+.+.+++-        .
T Consensus        11 lE~~l~~El~~lg~~------~~----~~~~~~~~~~~~~g~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~--------~   71 (373)
T 3tm4_A           11 IEDIAKREVSLLLKK------LG----ISFQIEEKPLGIEGRLLLEAEKAY-YVDEKGRKRELSISTYLNE--------N   71 (373)
T ss_dssp             CHHHHHHHHHHHHHT------TT----CCEEEEESGGGCTTEEEEEECCEE-EECTTSCEEEECHHHHHHH--------H
T ss_pred             hHHHHHHHHHHhhcc------cc----ccccceeccccccceEEEEEeccc-ccccccccCCHHHHHHHHH--------h
Confidence            688889999987531      00    1122  233435677777762100 00       1122333333        3


Q ss_pred             CceeEeecccceeeec----------CHHHHHHHHHHH-HHhhcccccccCCCCeeeEEEeeccCchhhccCCCCCCCCC
Q 026557           85 PVWCHRIFPIQATCVL----------KEKELQATVSKL-VLQFVNDEQNKLSRPVKFAVGYNRRGFEEKQNKIPKDTKDS  153 (237)
Q Consensus        85 tRfi~RL~PI~~TC~A----------~~~eI~~~a~~l-l~~~f~~~~~~~~~p~kFAI~~~~Rn~e~~~~~~~~~~~~~  153 (237)
                      +|..+|++-+-..+.+          +.++|.+.+..+ ...||.       +..+|+|..++.+               
T Consensus        72 ~R~a~rv~~~~~~~~~~~~~~~~~~~~~~~L~~~v~~~~w~~~l~-------~~~tF~V~~~~~~---------------  129 (373)
T 3tm4_A           72 SRLLHRVIIEIASEKFNGIEKDESEEALKRIKDFVSSLPVEQFVK-------VSETFAVRSFRKG---------------  129 (373)
T ss_dssp             CSSCSEEEEEEEEEECTTTTTSCHHHHHHHHHHHHHTSCGGGGSC-------TTSEEEEEEEEES---------------
T ss_pred             hhhHhheEEEEEEeEeccccccccCCCHHHHHHHHHhCCHHHhCC-------CCCcEEEEEEECC---------------
Confidence            5666677666555544          466676665542 222333       3349999998887               


Q ss_pred             ccccCCChHHHHHHHHHHhh----hcCCCCeeeCCCCCeEEEEEEeecCCCCCcccEEEEEee
Q 026557          154 DVSALLDRNKCFTIVAAAVK----EVVSDSAVDLKSPELSVLVELLPISGLPSELLVVGVSIL  212 (237)
Q Consensus       154 ~~n~~L~R~~vI~~VA~~V~----~~~~~hkVDLknPd~~IlVEV~k~~g~~~~~~vcgvSVv  212 (237)
                        ...+...++-..|-.+|.    .... ..||+++||+.|-+.+..        ..|-+++=
T Consensus       130 --~~~~~s~~~~~~vk~aIvd~~~~~g~-~~v~~~~p~~~i~~~~~~--------d~~~~~ld  181 (373)
T 3tm4_A          130 --DHNITSIDIARTVGEAIFERLSRFGT-PLVNLDHPAVIFRAELIK--------DVFFLGID  181 (373)
T ss_dssp             --SCSSCHHHHHHHHHHHHHHHHHTTSC-CEECSSSCSEEEEEEEET--------TEEEEEEE
T ss_pred             --CCcCCHHHHHHHHHHHHHHHHHHhCC-CcccCCCCCeEEEEEEEC--------CEEEEEEE
Confidence              445565555555544443    2122 589999999999999985        45666664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	237
d2dira1	85	d.308.1.3 (A:8-92) THUMP domain-containing protein	4e-04

>d2dira1 d.308.1.3 (A:8-92) THUMP domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: Alpha and beta proteins (a+b)
fold: THUMP domain
superfamily: THUMP domain-like
family: Minimal THUMP
domain: THUMP domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (83), Expect = 4e-04
 Identities = 16/110 (14%), Positives = 39/110 (35%), Gaps = 30/110 (27%)

Query: 103 KELQATVSKLVLQFVNDEQNKLSRPVKFAVGYNRRGFEEKQNKIPKDTKDSDVSALLDRN 162
           ++++      +  +             F + Y  R                     ++R 
Sbjct: 5   EDMKKYAETFLEPWFKAPNKG-----TFQIVYKSRNNSH-----------------VNRE 42

Query: 163 KCFTIVAAAVKEVVSDSAVDLKSPELSVLVELLPISGLPSELLVVGVSIL 212
           +    +A  V  + S++ VDL +P+ +V+VE++          V  +S++
Sbjct: 43  EVIRELAGIVCTLNSENKVDLTNPQYTVVVEIIKA--------VCCLSVV 84

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	237
d2dira1	85	THUMP domain-containing protein 1 {Human (Homo sap	99.86
d1vbka2	175	Hypothetical protein PH1313, N-terminal domain {Ar	98.97
d2c5sa2	171	Thiamine biosynthesis protein ThiI, N-terminal dom	98.79

>d2dira1 d.308.1.3 (A:8-92) THUMP domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: THUMP domain
superfamily: THUMP domain-like
family: Minimal THUMP
domain: THUMP domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=8.1e-22  Score=147.14  Aligned_cols=85  Identities=19%  Similarity=0.340  Sum_probs=78.5

Q ss_pred             ecCHHHHHHHHHHHHHhhcccccccCCCCeeeEEEeeccCchhhccCCCCCCCCCccccCCChHHHHHHHHHHhhhcCCC
Q 026557           99 VLKEKELQATVSKLVLQFVNDEQNKLSRPVKFAVGYNRRGFEEKQNKIPKDTKDSDVSALLDRNKCFTIVAAAVKEVVSD  178 (237)
Q Consensus        99 ~A~~~eI~~~a~~ll~~~f~~~~~~~~~p~kFAI~~~~Rn~e~~~~~~~~~~~~~~~n~~L~R~~vI~~VA~~V~~~~~~  178 (237)
                      +|++++|.+.|..++++||+..     ++.||||.+++|+                 ++.|+|++++..||++|....++
T Consensus         1 ~A~ledi~k~a~~l~~~~~~~~-----~~~TF~V~~krr~-----------------~~~l~s~ev~~~vg~~v~~~~~~   58 (85)
T d2dira1           1 KAFLEDMKKYAETFLEPWFKAP-----NKGTFQIVYKSRN-----------------NSHVNREEVIRELAGIVCTLNSE   58 (85)
T ss_dssp             CHHHHHHHHHHHHHHHHHHSTT-----CCCEEEEEEECSS-----------------CCSSCHHHHHHHHHHHHHHHCTT
T ss_pred             CCCHHHHHHHHHHHHHHHhccC-----CCceEEEEEEeCC-----------------CCCCCHHHHHHHHHHHHHhhCCC
Confidence            4889999999999999999743     4679999999999                 88999999999999999888889


Q ss_pred             CeeeCCCCCeEEEEEEeecCCCCCcccEEEEEeeC
Q 026557          179 SAVDLKSPELSVLVELLPISGLPSELLVVGVSILP  213 (237)
Q Consensus       179 hkVDLknPd~~IlVEV~k~~g~~~~~~vcgvSVv~  213 (237)
                      |+|||+|||++|+|||++        ++||||||.
T Consensus        59 ~~VdL~~Pd~~I~Vev~~--------~~~~iSvv~   85 (85)
T d2dira1          59 NKVDLTNPQYTVVVEIIK--------AVCCLSVVK   85 (85)
T ss_dssp             CEECSSSCSEEEEEEEET--------TEEEEEEEE
T ss_pred             ceeeccCCCEEEEEEEeC--------CEEEEEEeC
Confidence            999999999999999996        899999984

>d1vbka2 d.308.1.1 (A:1-175) Hypothetical protein PH1313, N-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: THUMP domain
superfamily: THUMP domain-like
family: THUMP domain
domain: Hypothetical protein PH1313, N-terminal domain
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.97  E-value=2.2e-09  Score=88.03  Aligned_cols=110  Identities=15%  Similarity=0.156  Sum_probs=84.0

Q ss_pred             CeEEEEEeCCCCCCChHHHHHHHHHHhhcCCCCCCceeEeecccceeeecCHHHHHHHHHHHHHhhcccccccCCCCeee
Q 026557           51 NGLLLLTFPREHSPNTINIVSNIFQSLGSGSLKSPVWCHRIFPIQATCVLKEKELQATVSKLVLQFVNDEQNKLSRPVKF  130 (237)
Q Consensus        51 ~g~vFi~t~~~~~~dP~~lV~~I~~D~~~~~~k~tRfi~RL~PI~~TC~A~~~eI~~~a~~ll~~~f~~~~~~~~~p~kF  130 (237)
                      .+-+++.+.     +|.++.+ .++        +.--|..+.|+ ..|..++++|.+.|..++..++....   .++.||
T Consensus        48 ~~ri~v~~~-----~~~~~~~-~L~--------~vfGI~~~s~v-~~ve~~le~I~~~a~~~~~~~~~~~~---~~~~tF  109 (175)
T d1vbka2          48 HGRIIVKTN-----SPKEAAN-VLV--------RVFGIVSISPA-MEVEASLEKINRTALLMFRKKAKEVG---KERPKF  109 (175)
T ss_dssp             TTEEEEECS-----CHHHHHH-HHT--------TSTTEEEEEEE-EEEECCHHHHHHHHHHHHHHHHHHHT---CSSCEE
T ss_pred             cCEEEEEcC-----ChHHHHH-HHH--------hCCCCCeEEEE-EEEcCCHHHHHHHHHHHHHHHHHhhc---cCCCcE
Confidence            456788763     4554433 222        33346666677 46788999999999999998875322   234599


Q ss_pred             EEEeeccCchhhccCCCCCCCCCcccc-CCChHHHHHHHHHHhhhcCCCCeeeCCCCCeEEEEEEee
Q 026557          131 AVGYNRRGFEEKQNKIPKDTKDSDVSA-LLDRNKCFTIVAAAVKEVVSDSAVDLKSPELSVLVELLP  196 (237)
Q Consensus       131 AI~~~~Rn~e~~~~~~~~~~~~~~~n~-~L~R~~vI~~VA~~V~~~~~~hkVDLknPd~~IlVEV~k  196 (237)
                      ||..+|++                 .+ .++.+++-..|++.|.. .++++|||+|||++|.|||.+
T Consensus       110 ~V~~kR~~-----------------k~f~~tS~ei~~~vG~~i~~-~~~~~VdL~nPd~~i~vEI~~  158 (175)
T d1vbka2         110 RVTARRIT-----------------KEFPLDSLEIQAKVGEYILN-NENCEVDLKNYDIEIGIEIMQ  158 (175)
T ss_dssp             EEEEEESS-----------------SCSSSCHHHHHHHHHHHHHH-HSSCEECSSSCSEEEEEEEET
T ss_pred             EEEEEecC-----------------CCCCCChHHHHHHHHHHHhh-cCCCeeeccCCCEEEEEEEEe
Confidence            99999988                 44 69999999999998865 378999999999999999986

>d2c5sa2 d.308.1.1 (A:3-173) Thiamine biosynthesis protein ThiI, N-terminal domain {Bacillus anthracis [TaxId: 1392]}

class: Alpha and beta proteins (a+b)
fold: THUMP domain
superfamily: THUMP domain-like
family: THUMP domain
domain: Thiamine biosynthesis protein ThiI, N-terminal domain
species: Bacillus anthracis [TaxId: 1392]

Probab=98.79  E-value=2.9e-08  Score=81.15  Aligned_cols=108  Identities=12%  Similarity=0.164  Sum_probs=80.9

Q ss_pred             eEEEEEeCCCCCCChHHHHHHHHHHhhcCCCCCCceeEeecccceeeecCHHHHHHHHHHHHHhhcccccccCCCCeeeE
Q 026557           52 GLLLLTFPREHSPNTINIVSNIFQSLGSGSLKSPVWCHRIFPIQATCVLKEKELQATVSKLVLQFVNDEQNKLSRPVKFA  131 (237)
Q Consensus        52 g~vFi~t~~~~~~dP~~lV~~I~~D~~~~~~k~tRfi~RL~PI~~TC~A~~~eI~~~a~~ll~~~f~~~~~~~~~p~kFA  131 (237)
                      +-++|.++.   .++.++..++ .        +.==|..+-|+.. |..++++|.+.|..++..+..       ++.+||
T Consensus        46 ~r~~v~~~~---~~~~~v~e~L-~--------~vfGI~~~s~~~~-~~~dle~I~~~a~~~~~~~~~-------~~~tF~  105 (171)
T d2c5sa2          46 DRMYIQLNG---EDHEAVSERL-K--------DVFGIHKFNLAMK-VPSELEDIKKGALAAFLQVKG-------DVKTFK  105 (171)
T ss_dssp             SCEEEECTT---CCHHHHHHHH-T--------TCTTEEEEEEEEE-EESSHHHHHHHHHHHHHTCCS-------CCCEEE
T ss_pred             CEEEEEecC---CCHHHHHHHH-c--------cCCCccEEEEEEE-eCCCHHHHHHHHHHHHHHhcc-------CCceEE
Confidence            446777642   2566544432 2        2334667777774 467899999888777765432       345999


Q ss_pred             EEeeccCchhhccCCCCCCCCCcccc-CCChHHHHHHHHHHhhhcCCCCeeeCCCCCeEEEEEEee
Q 026557          132 VGYNRRGFEEKQNKIPKDTKDSDVSA-LLDRNKCFTIVAAAVKEVVSDSAVDLKSPELSVLVELLP  196 (237)
Q Consensus       132 I~~~~Rn~e~~~~~~~~~~~~~~~n~-~L~R~~vI~~VA~~V~~~~~~hkVDLknPd~~IlVEV~k  196 (237)
                      |..+|++                 .. .++.+++-..|++.|....++.+|||+|||++|.|||.+
T Consensus       106 Vr~kR~~-----------------k~f~~tS~ei~~~lG~~il~~~~~~kVdL~nPd~~i~veI~~  154 (171)
T d2c5sa2         106 ITVHRSY-----------------KHFPMRTMELLPEIGGHILENTEDITVDVHNPDVNVRVEIRS  154 (171)
T ss_dssp             EEEEECC-----------------TTCSSCHHHHHHHHHHHHHTTSSSCEECSSSCSEEEEEEECS
T ss_pred             EEEEECC-----------------CCCCCCCHHHHHHHHHHHHHhCCCCeeeccCCCEEEEEEEEc
Confidence            9999888                 55 799999999999999776678999999999999999986