Citrus Sinensis ID: 026566

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------
Protein Sequence
MIQNLLGTSVTFKFEAYMVFNNLMIMDACQIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRHVGESDKAYLEKRDGLIKNKTIEIDLGSSFPRLFGPQVASRVLGEIQKVFTA
Secondary Structure (PSIPRED)
cccccccccEEEccccccccccEEccccccHHHHHHHHHHccccccccccHHHHHHcccccccccHHHHHHHHccccEEEEEEEccccccccccHHHHHHHHccccHHHHHHHHHHcccccccccccccEEccccccEEEEEEEcccccccccccHHHHHHHHcHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcEEccccccccccccHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cHHHHccccEEEEEEEEEEcccccccccccccEEEEEHHcccccccccEEHHEEEEEcccccccccEEEEEEEcccccEEEEEEccccccccccHHHHHHHHccccHHHHHHHHHHcccccccccccEEEEEEEcccEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccEEEccccccHHHccHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
miqnllgtsvtfKFEAYMVFNNLMIMDACQIDFILgswvhselptgaalNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLIldlsprkdlvlhpdylqtfyestRLDEYRQMLEkvpevrpyfssslylrcvispsaimvrvdtetetgagestrlDYIITNHVHPVAKQVIGIWLnqcacggrhvgesdKAYLEKRDGLIKNKTIeidlgssfprlfgpqvASRVLGEIQKVFTA
Flexible Loop (DISEMBL)
MIQNLLGTSVTFKFEAYMVFNNLMIMDACQIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRHVGESDKAYLEKRDGLIKNKTIeidlgssfprlfgpqvaSRVLGEIQKVFTA
Low Complexity Region (SEG)
MIQNLLGTSVTFKFEAYMVFNNLMIMDACQIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRHVGESDKAYLEKRDGLIKNKTIEIDLGSSFPRLFGPQVASRVLGEIQKVFTA
Disordered region (IsUnstruct)
****LLGTSVTFKFEAYMVFNNLMIMDACQIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRHVGESDKAYLEKRDGLIKNKTIEIDLGSSFPRLFGPQVASRVLGEIQ*****
Disordered Region (DISOPRED)
***NL*GTSVTFKFEAYMVFNNLMIMDACQIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIMVRVDT**********RLDYIITNHVHPVAKQVIGIWLNQCAC*************EKRDGLIKNKTIEIDLGSSFPRLFGPQVASRVLGEIQKVFT*
Disordered Region (DISEMBL)
MIQNLLGTSVTFKFEAYMVFNNLMIMDACQIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRHVGESDKAYLEKRDGLIKNKTIEIDLGSSFPRLFGPQVASRVLGEIQKVFTA
Disordered Region (DISPRO)
MIQNLLGTSVTFKFEAYMVFNNLMIMDACQIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRHVGESDKAYLEKRDGLIKNKTIEIDLGSSFPRLFGPQVASRVLGEIQKVFTA
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIQNLLGTSVTFKFEAYMVFNNLMIMDACQIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRHVGESDKAYLEKRDGLIKNKTIEIDLGSSFPRLFGPQVASRVLGEIQKVFTA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	237	2.2.26 [Sep-21-2011]
Q8LDU4	319	Red chlorophyll catabolit	yes	no	0.839	0.623	0.509	6e-53
Q9MTQ6	205	Red chlorophyll catabolit	N/A	no	0.843	0.975	0.434	5e-50

>sp|Q8LDU4|RCCR_ARATH Red chlorophyll catabolite reductase, chloroplastic OS=Arabidopsis thaliana GN=RCCR PE=1 SV=2

 Score =  207 bits (526), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 106/208 (50%), Positives = 147/208 (70%), Gaps = 9/208 (4%)

Query: 31  IDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKD 90
           IDF++GSW+H ++PTG +LNITS+S +LNSST APN ++ELIQSS  SLVLILDL  RKD
Sbjct: 115 IDFVIGSWIHCKIPTGVSLNITSISGFLNSSTKAPNFVVELIQSSSKSLVLILDLPHRKD 174

Query: 91  LVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIMVRVDTETETG 150
           LVL+PDYL+ +Y+ T LD +RQ L K+PEV PY S SL++R   SP+A M+++D E    
Sbjct: 175 LVLNPDYLKEYYQDTALDSHRQSLLKLPEVNPYVSPSLFVRSAFSPTASMLKIDAE---- 230

Query: 151 AGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRH---VGESDKAYLEKRDGLIKNKTI 207
             E  +L+ I+ +HV P AK+V+ +WL +C         VGE ++  LE+RD   + K+I
Sbjct: 231 --EEDKLEEILRDHVSPAAKEVLEVWLERCVKEEEEKIVVGEEERMELERRDKSFRRKSI 288

Query: 208 EIDLGSSFPRLFGPQVASRVLGEIQKVF 235
           E DL   FPR+FG +V+SRV+  I++ F
Sbjct: 289 EDDLDLQFPRMFGEEVSSRVVHAIKEAF 316

Catalyzes the key reaction of chlorophyll catabolism, porphyrin macrocycle cleavage of pheophorbide a (pheide a) to a primary fluorescent catabolite (pFCC). Works in a two-step reaction with pheophorbide a oxygenase (PaO) by reducing the C20/C1 double bond of the intermediate, RCC.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 3EC: .EC: 1EC: .EC: 8EC: 0

>sp|Q9MTQ6|RCCR_HORVU Red chlorophyll catabolite reductase (Fragment) OS=Hordeum vulgare GN=rccR PE=2 SV=1

 Score =  197 bits (501), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 89/205 (43%), Positives = 142/205 (69%), Gaps = 5/205 (2%)

Query: 31  IDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKD 90
           IDF+L S +H ++P GA ++ITSL   LN+STDAP+ ++E IQ SP+S+V++LDL PRKD
Sbjct: 1   IDFMLQSSLHCKVPNGA-IDITSLFINLNASTDAPHFIMEFIQGSPTSMVVLLDLLPRKD 59

Query: 91  LVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIMVRVDTETETG 150
           L LHP+Y++ +YE T +D+ R+++E++P+ RPY S SL++R   SP+A+   +D     G
Sbjct: 60  LALHPEYIEKYYEDTEVDKQRKIIEQLPQARPYLSPSLFVRSAFSPTAVFFTID----CG 115

Query: 151 AGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRHVGESDKAYLEKRDGLIKNKTIEID 210
            G    L+ I+  H+  V K ++ IWL+ CA     + E ++  + KRD  +++K+IE+D
Sbjct: 116 KGGEGTLEEIVHGHLASVVKGILQIWLDTCASDASEMEEGEREIMVKRDRTVRSKSIEVD 175

Query: 211 LGSSFPRLFGPQVASRVLGEIQKVF 235
           L ++ PR+FGP V+ R++ EI+K F
Sbjct: 176 LTANLPRMFGPDVSGRIIAEIRKAF 200

Catalyzes the key reaction of chlorophyll catabolism, porphyrin macrocycle cleavage of pheophorbide a (pheide a) to a primary fluorescent catabolite (pFCC). Works in a two-step reaction with pheophorbide a oxygenase (PaO) by reducing the C20/C1 double bond of the intermediate, RCC.

Hordeum vulgare (taxid: 4513)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 8

EC: 0

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	237
359806208	329	uncharacterized protein LOC100780934 [Gl	0.856	0.617	0.690	4e-80
356552529	322	PREDICTED: red chlorophyll catabolite re	0.852	0.627	0.694	2e-79
147839733	359	hypothetical protein VITISV_028662 [Viti	0.852	0.562	0.674	4e-79
255645027	322	unknown [Glycine max]	0.852	0.627	0.694	6e-79
225438706	322	PREDICTED: red chlorophyll catabolite re	0.864	0.636	0.669	9e-79
357495123	212	Red chlorophyll catabolite reductase [Me	0.864	0.966	0.650	3e-78
255565168	313	Red chlorophyll catabolite reductase, ch	0.852	0.645	0.674	3e-78
357495121	277	Red chlorophyll catabolite reductase [Me	0.852	0.729	0.655	5e-78
224094332	276	predicted protein [Populus trichocarpa]	0.873	0.75	0.654	2e-77
162568920	314	putative red chlorophyll catabolite redu	0.869	0.656	0.638	1e-74

>gi|359806208|ref|NP_001240950.1| uncharacterized protein LOC100780934 [Glycine max] gi|255639043|gb|ACU19822.1| unknown [Glycine max]

 Score =  303 bits (776), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 143/207 (69%), Positives = 177/207 (85%), Gaps = 4/207 (1%)

Query: 30  QIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRK 89
           QIDF+LGSWVHSELPTG +L+ITSLSAYLNSSTDAPN + E+I+SSP+ LVLILDL PRK
Sbjct: 126 QIDFVLGSWVHSELPTGGSLDITSLSAYLNSSTDAPNFVFEMIRSSPTMLVLILDLPPRK 185

Query: 90  DLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIMVRVDTETET 149
           DLVL PD L+TFYE T+LD++RQ L++VPEV+PYFSSSLY+R V SP+AIMVR+ TE   
Sbjct: 186 DLVLWPDDLKTFYEDTQLDKHRQALDRVPEVQPYFSSSLYIRTVSSPTAIMVRILTEN-- 243

Query: 150 GAGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRHVGESDKAYLEKRDGLIKNKTIEI 209
             G   R++ II +H+ P++KQV+GIWL+ CAC  R VGE+++AYL+KRDGLI+NKTIEI
Sbjct: 244 --GGVERMEEIIRDHLDPISKQVLGIWLDHCACAKRQVGEAERAYLKKRDGLIRNKTIEI 301

Query: 210 DLGSSFPRLFGPQVASRVLGEIQKVFT 236
           DLGSSFPRLFGP+VA+RVL  I++ FT
Sbjct: 302 DLGSSFPRLFGPEVANRVLDAIKEYFT 328

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552529|ref|XP_003544619.1| PREDICTED: red chlorophyll catabolite reductase, chloroplastic-like [Glycine max]

 Score =  300 bits (769), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 143/206 (69%), Positives = 176/206 (85%), Gaps = 4/206 (1%)

Query: 31  IDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKD 90
           IDF+LGSWVHSELPTG +L+ITSLSAYLNSSTDAPN + E+I+SSP+ L+LILDL PRKD
Sbjct: 120 IDFVLGSWVHSELPTGGSLDITSLSAYLNSSTDAPNFVFEMIRSSPTMLLLILDLPPRKD 179

Query: 91  LVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIMVRVDTETETG 150
           LVL PD L+TFYE T+LD++RQ LE+VPEV+PYFSSSLY+R V SP+AIMVRV TE    
Sbjct: 180 LVLWPDDLKTFYEDTQLDKHRQTLERVPEVQPYFSSSLYIRTVSSPTAIMVRVLTEN--- 236

Query: 151 AGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRHVGESDKAYLEKRDGLIKNKTIEID 210
            G   R++ II +H+ P++KQV+GIWL+ CAC  R VGE+++AYL+KRDGLI+NKTIEID
Sbjct: 237 -GGVERMEEIIRDHLDPISKQVLGIWLDHCACAKREVGEAERAYLKKRDGLIRNKTIEID 295

Query: 211 LGSSFPRLFGPQVASRVLGEIQKVFT 236
           LGSSFPRLFGP+VA+RVL  I++ FT
Sbjct: 296 LGSSFPRLFGPEVANRVLEAIKEYFT 321

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147839733|emb|CAN61781.1| hypothetical protein VITISV_028662 [Vitis vinifera]

 Score =  300 bits (767), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 139/206 (67%), Positives = 173/206 (83%), Gaps = 4/206 (1%)

Query: 30  QIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRK 89
           +IDF+LGSW+H +LP+G ALNITSLS YLN STDAPN LIELI+SSP+SLVLILDL PRK
Sbjct: 157 KIDFVLGSWIHCQLPSGGALNITSLSTYLNPSTDAPNFLIELIRSSPTSLVLILDLPPRK 216

Query: 90  DLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIMVRVDTETET 149
           DL LHPDYLQTFYE T+L+  RQ+LEK+PE +PYFSSSLY+RC++SP+AJM R++TE   
Sbjct: 217 DLALHPDYLQTFYEDTKLESRRQLLEKIPESQPYFSSSLYIRCIVSPTAJMTRIETE--- 273

Query: 150 GAGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRHVGESDKAYLEKRDGLIKNKTIEI 209
            AG   R++ I+ +HV PVAK+V+GIWL+QCA G R VG+S+ +YLEKRD LI++KTIEI
Sbjct: 274 -AGGVERMEEILQSHVGPVAKEVLGIWLDQCAFGEREVGDSEISYLEKRDRLIRSKTIEI 332

Query: 210 DLGSSFPRLFGPQVASRVLGEIQKVF 235
           DLGSS PRLFGP+ A RVL  ++ VF
Sbjct: 333 DLGSSLPRLFGPETAGRVLEAMRGVF 358

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255645027|gb|ACU23013.1| unknown [Glycine max]

 Score =  299 bits (766), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 143/206 (69%), Positives = 175/206 (84%), Gaps = 4/206 (1%)

Query: 31  IDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKD 90
           IDF+LGSWVHSELPTG +L+ITSLSAYLNSSTDAPN + E+I+SSP+ L+LILDL PRKD
Sbjct: 120 IDFVLGSWVHSELPTGGSLDITSLSAYLNSSTDAPNFVFEMIRSSPTMLLLILDLPPRKD 179

Query: 91  LVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIMVRVDTETETG 150
           LVL PD L+TFYE T+LD++RQ LE+VPEV+PYFSSSLY+R V SP+AIMVRV TE    
Sbjct: 180 LVLWPDDLKTFYEDTQLDKHRQTLERVPEVQPYFSSSLYIRTVSSPTAIMVRVLTEN--- 236

Query: 151 AGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRHVGESDKAYLEKRDGLIKNKTIEID 210
            G   R++ II +H+ P++KQV+GIWL+ CAC  R VGE+++AYL+KRDGLI NKTIEID
Sbjct: 237 -GGVERMEEIIRDHLDPISKQVLGIWLDHCACAKREVGEAERAYLKKRDGLITNKTIEID 295

Query: 211 LGSSFPRLFGPQVASRVLGEIQKVFT 236
           LGSSFPRLFGP+VA+RVL  I++ FT
Sbjct: 296 LGSSFPRLFGPEVANRVLEAIKEYFT 321

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438706|ref|XP_002277744.1| PREDICTED: red chlorophyll catabolite reductase, chloroplastic [Vitis vinifera] gi|296082425|emb|CBI21430.3| unnamed protein product [Vitis vinifera]

 Score =  298 bits (764), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 140/209 (66%), Positives = 173/209 (82%), Gaps = 4/209 (1%)

Query: 27  DACQIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLS 86
           D+  IDF+LGSW+H +LP+G ALNITSLS YLN STDAPN LIELI+SSP+SLVLILDL 
Sbjct: 117 DSSPIDFVLGSWIHCQLPSGGALNITSLSTYLNPSTDAPNFLIELIRSSPTSLVLILDLP 176

Query: 87  PRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIMVRVDTE 146
           PRKDL LHPDYLQTFYE T+L+  RQ+LEK+PE +PYFSSSLY+RC++SP+AIM R++TE
Sbjct: 177 PRKDLALHPDYLQTFYEDTKLESRRQLLEKIPESQPYFSSSLYIRCIVSPTAIMTRIETE 236

Query: 147 TETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRHVGESDKAYLEKRDGLIKNKT 206
               AG   R++ I+ +HV PVA +V+GIWL+QCA G R VG+S+ +YLEKRD LI++KT
Sbjct: 237 ----AGGVERMEEILQSHVGPVAMEVLGIWLDQCAFGEREVGDSEISYLEKRDRLIRSKT 292

Query: 207 IEIDLGSSFPRLFGPQVASRVLGEIQKVF 235
           IEIDLGSS PRLFGP+ A RVL  ++ VF
Sbjct: 293 IEIDLGSSLPRLFGPETAGRVLEAMRGVF 321

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357495123|ref|XP_003617850.1| Red chlorophyll catabolite reductase [Medicago truncatula] gi|355519185|gb|AET00809.1| Red chlorophyll catabolite reductase [Medicago truncatula]

 Score =  297 bits (760), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 136/209 (65%), Positives = 171/209 (81%), Gaps = 4/209 (1%)

Query: 28  ACQIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSP 87
           A  IDF++GSWVH+ELPTG +L+ITSLSAYLNSS DAPN + ELI+SSP+ L+L+LDL P
Sbjct: 7   ARMIDFVMGSWVHAELPTGGSLDITSLSAYLNSSNDAPNFVFELIRSSPTMLILVLDLPP 66

Query: 88  RKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIMVRVDTET 147
           RKDLVL PDYL+TFYE T+LD ++Q LEK+PEV+PY +SSL++R V SP+AI VR+ TE 
Sbjct: 67  RKDLVLWPDYLKTFYEDTKLDTHKQALEKIPEVQPYITSSLFIRSVASPTAIFVRIQTEN 126

Query: 148 ETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRHVGESDKAYLEKRDGLIKNKTI 207
           + G     R+D II NH+ PV+KQV+GIWL+ CAC  R VGE DKAYL KRDG+I+NKTI
Sbjct: 127 DEGE----RIDEIIKNHIDPVSKQVLGIWLDHCACAEREVGEEDKAYLIKRDGVIRNKTI 182

Query: 208 EIDLGSSFPRLFGPQVASRVLGEIQKVFT 236
           E+DLGSSFPRLFGP+ A ++L  I++ FT
Sbjct: 183 EVDLGSSFPRLFGPEAAKQILEAIKEYFT 211

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255565168|ref|XP_002523576.1| Red chlorophyll catabolite reductase, chloroplast precursor, putative [Ricinus communis] gi|223537138|gb|EEF38771.1| Red chlorophyll catabolite reductase, chloroplast precursor, putative [Ricinus communis]

 Score =  297 bits (760), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 139/206 (67%), Positives = 174/206 (84%), Gaps = 4/206 (1%)

Query: 31  IDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKD 90
           +DFILGSW+H +LPTGAALNITSLSAYLN STDAPN LIELIQSSP+SLVLI+DL PRKD
Sbjct: 111 VDFILGSWLHCKLPTGAALNITSLSAYLNLSTDAPNFLIELIQSSPTSLVLIIDLPPRKD 170

Query: 91  LVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIMVRVDTETETG 150
           LVL+PDYLQTFYE+++L+ +RQ L+K+ EV+PY +SSLYLR  +SP+AIM+ V+TE    
Sbjct: 171 LVLYPDYLQTFYENSQLEAHRQTLQKLKEVQPYVTSSLYLRSFLSPTAIMILVETE---- 226

Query: 151 AGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRHVGESDKAYLEKRDGLIKNKTIEID 210
           AGES R++ II + V PVAK V G+WL++CACGGR V E +KAYL+KRD L+K K IEID
Sbjct: 227 AGESGRMEEIIKDQVGPVAKAVFGVWLDKCACGGREVEEEEKAYLKKRDELVKKKIIEID 286

Query: 211 LGSSFPRLFGPQVASRVLGEIQKVFT 236
           L S+FPR+FGP++A R+LG IQK++ 
Sbjct: 287 LASNFPRMFGPELADRILGAIQKIYN 312

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357495121|ref|XP_003617849.1| Red chlorophyll catabolite reductase [Medicago truncatula] gi|355519184|gb|AET00808.1| Red chlorophyll catabolite reductase [Medicago truncatula]

 Score =  296 bits (758), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 135/206 (65%), Positives = 170/206 (82%), Gaps = 4/206 (1%)

Query: 31  IDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKD 90
           IDF++GSWVH+ELPTG +L+ITSLSAYLNSS DAPN + ELI+SSP+ L+L+LDL PRKD
Sbjct: 75  IDFVMGSWVHAELPTGGSLDITSLSAYLNSSNDAPNFVFELIRSSPTMLILVLDLPPRKD 134

Query: 91  LVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIMVRVDTETETG 150
           LVL PDYL+TFYE T+LD ++Q LEK+PEV+PY +SSL++R V SP+AI VR+ TE + G
Sbjct: 135 LVLWPDYLKTFYEDTKLDTHKQALEKIPEVQPYITSSLFIRSVASPTAIFVRIQTENDEG 194

Query: 151 AGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRHVGESDKAYLEKRDGLIKNKTIEID 210
                R+D II NH+ PV+KQV+GIWL+ CAC  R VGE DKAYL KRDG+I+NKTIE+D
Sbjct: 195 E----RIDEIIKNHIDPVSKQVLGIWLDHCACAEREVGEEDKAYLIKRDGVIRNKTIEVD 250

Query: 211 LGSSFPRLFGPQVASRVLGEIQKVFT 236
           LGSSFPRLFGP+ A ++L  I++ FT
Sbjct: 251 LGSSFPRLFGPEAAKQILEAIKEYFT 276

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224094332|ref|XP_002310143.1| predicted protein [Populus trichocarpa] gi|118486991|gb|ABK95327.1| unknown [Populus trichocarpa] gi|222853046|gb|EEE90593.1| predicted protein [Populus trichocarpa]

 Score =  294 bits (752), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 138/211 (65%), Positives = 171/211 (81%), Gaps = 4/211 (1%)

Query: 26  MDACQIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDL 85
           + + Q+DFILGSW+H +LPTG ALNITSLSAYLN STDAPN +IELIQSSP+SLV ILDL
Sbjct: 69  LQSSQVDFILGSWLHCKLPTGGALNITSLSAYLNPSTDAPNFMIELIQSSPTSLVFILDL 128

Query: 86  SPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIMVRVDT 145
            PRKD VL PDYLQTFYE+T+LD +RQML K+PEV+PY SSSLYLR V+SP+ +M+++  
Sbjct: 129 PPRKDPVLSPDYLQTFYENTQLDTHRQMLAKLPEVQPYVSSSLYLRSVLSPTVVMIQIGA 188

Query: 146 ETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRHVGESDKAYLEKRDGLIKNK 205
           +    AG   R++ I+ NH+ P A++V+GIWL+ CA G R VGE +KAY+ KRD LIK K
Sbjct: 189 Q----AGGPERMEEIVKNHIDPTAQEVLGIWLDHCARGERLVGEEEKAYMMKRDELIKKK 244

Query: 206 TIEIDLGSSFPRLFGPQVASRVLGEIQKVFT 236
           TIEIDLG++FPRLFGP+V  RVLG IQKV+ 
Sbjct: 245 TIEIDLGTNFPRLFGPEVTDRVLGAIQKVYN 275

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|162568920|gb|ABY19386.1| putative red chlorophyll catabolite reductase [Nicotiana tabacum]

 Score =  285 bits (729), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 134/210 (63%), Positives = 169/210 (80%), Gaps = 4/210 (1%)

Query: 28  ACQIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSP 87
           + Q+DFILGSWVH  LPTG ALNITSLSAYL  STDAPN LIE+I+SSP+SL+LILDL P
Sbjct: 109 SSQVDFILGSWVHCNLPTGGALNITSLSAYLRPSTDAPNFLIEVIRSSPTSLILILDLPP 168

Query: 88  RKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIMVRVDTET 147
           RKDLV HPDYL+TFYE T+LDE RQ+LEK+PEV+PYFSSSLY+R V+SPSAI+V ++TE 
Sbjct: 169 RKDLVQHPDYLKTFYEETQLDEQRQLLEKLPEVKPYFSSSLYIRAVVSPSAILVSIETE- 227

Query: 148 ETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRHVGESDKAYLEKRDGLIKNKTI 207
              A ++ R+D II +H+ PVAK ++  WL+ CAC  R + E +   L KRD +IKNKTI
Sbjct: 228 ---ASQAVRIDEIIQDHISPVAKVMLETWLDLCACAERKLTEDESTALAKRDKIIKNKTI 284

Query: 208 EIDLGSSFPRLFGPQVASRVLGEIQKVFTA 237
           EIDL SSFPRLFG +VA++VL  +++++ A
Sbjct: 285 EIDLESSFPRLFGQEVANKVLVVLREIYNA 314

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	237
TAIR|locus:2115105	319	ACD2 "ACCELERATED CELL DEATH 2	0.839	0.623	0.509	4.4e-52

TAIR|locus:2115105 ACD2 "ACCELERATED CELL DEATH 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 540 (195.1 bits), Expect = 4.4e-52, P = 4.4e-52
 Identities = 106/208 (50%), Positives = 147/208 (70%)

Query:    31 IDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKD 90
             IDF++GSW+H ++PTG +LNITS+S +LNSST APN ++ELIQSS  SLVLILDL  RKD
Sbjct:   115 IDFVIGSWIHCKIPTGVSLNITSISGFLNSSTKAPNFVVELIQSSSKSLVLILDLPHRKD 174

Query:    91 LVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIMVRVDTETETG 150
             LVL+PDYL+ +Y+ T LD +RQ L K+PEV PY S SL++R   SP+A M+++D E    
Sbjct:   175 LVLNPDYLKEYYQDTALDSHRQSLLKLPEVNPYVSPSLFVRSAFSPTASMLKIDAE---- 230

Query:   151 AGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRH---VGESDKAYLEKRDGLIKNKTI 207
               E  +L+ I+ +HV P AK+V+ +WL +C         VGE ++  LE+RD   + K+I
Sbjct:   231 --EEDKLEEILRDHVSPAAKEVLEVWLERCVKEEEEKIVVGEEERMELERRDKSFRRKSI 288

Query:   208 EIDLGSSFPRLFGPQVASRVLGEIQKVF 235
             E DL   FPR+FG +V+SRV+  I++ F
Sbjct:   289 EDDLDLQFPRMFGEEVSSRVVHAIKEAF 316


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.136   0.395    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      237       237   0.00090  113 3  11 22  0.40    33
                                                     32  0.43    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  600 (64 KB)
  Total size of DFA:  172 KB (2101 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.61u 0.21s 20.82t   Elapsed:  00:00:01
  Total cpu time:  20.61u 0.21s 20.82t   Elapsed:  00:00:01
  Start:  Mon May 20 16:31:56 2013   End:  Mon May 20 16:31:57 2013

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015996 "chlorophyll catabolic process" evidence=RCA;IMP;TAS

GO:0051743 "red chlorophyll catabolite reductase activity" evidence=IDA;TAS

GO:0005739 "mitochondrion" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=RCA;IDA

GO:0009814 "defense response, incompatible interaction" evidence=IMP

GO:0043067 "regulation of programmed cell death" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0010304 "PSII associated light-harvesting complex II catabolic process" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8LDU4	RCCR_ARATH	1, ., 3, ., 1, ., 8, 0	0.5096	0.8396	0.6238	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh4_pg.C_LG_VII000889	SubName- Full=Putative uncharacterized protein; (277 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.163.75.1	pheophorbide a oxygenase (456 aa)					•	•	•		0.911

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	237
PLN02581	267	PLN02581, PLN02581, red chlorophyll catabolite red	1e-116
pfam06405	255	pfam06405, RCC_reductase, Red chlorophyll cataboli	1e-106

>gnl|CDD|215318 PLN02581, PLN02581, red chlorophyll catabolite reductase

 Score =  333 bits (855), Expect = e-116
 Identities = 128/206 (62%), Positives = 168/206 (81%), Gaps = 4/206 (1%)

Query: 30  QIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRK 89
           +IDF+LGSW+H +LPTG ALNITSLSA+LN STDAP+ L+ELIQSSP+SLVLILDL PRK
Sbjct: 64  KIDFVLGSWLHCKLPTGGALNITSLSAFLNPSTDAPHFLVELIQSSPTSLVLILDLPPRK 123

Query: 90  DLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIMVRVDTETET 149
           DLVLHPDYL+T+YE T+LD +RQ LEK+P+V+PY S SLY+R V+SP+AI+V++D E   
Sbjct: 124 DLVLHPDYLKTYYEDTQLDAHRQKLEKLPQVQPYVSPSLYVRSVVSPTAILVKIDCE--- 180

Query: 150 GAGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRHVGESDKAYLEKRDGLIKNKTIEI 209
             G   RL+ I+ + V PVAK+V+ IWL+ CAC GR + E ++AYLEKRD +I++K++E+
Sbjct: 181 -EGGEERLEEIVRDQVAPVAKEVLEIWLDSCACLGREMEEEERAYLEKRDRMIRSKSVEV 239

Query: 210 DLGSSFPRLFGPQVASRVLGEIQKVF 235
           DL S+ PRLFG +VA RV+  I+K F
Sbjct: 240 DLSSNMPRLFGQEVADRVVAAIRKAF 265

Length = 267

>gnl|CDD|203437 pfam06405, RCC_reductase, Red chlorophyll catabolite reductase (RCC reductase)

 Score =  306 bits (785), Expect = e-106
 Identities = 127/209 (60%), Positives = 160/209 (76%), Gaps = 4/209 (1%)

Query: 27  DACQIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLS 86
            +  IDF+LGSW+H +LPTG ALNITSLS YLN STDAP+ L E IQSSP+SLVLILDL 
Sbjct: 51  PSSPIDFMLGSWLHCKLPTGGALNITSLSVYLNPSTDAPHFLFEFIQSSPTSLVLILDLL 110

Query: 87  PRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIMVRVDTE 146
           PRKDLVLHPDYL+ +YE T+LD+ RQ+LEK+PEVRPYFSSSLY+R V+SP+AI+V +  E
Sbjct: 111 PRKDLVLHPDYLKRYYEETQLDKQRQLLEKLPEVRPYFSSSLYVRSVVSPTAILVSIQCE 170

Query: 147 TETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRHVGESDKAYLEKRDGLIKNKT 206
                G   RL+ I+  H+ P AK+V+ IWL  CA G R V ES++  LEKRD +++ K+
Sbjct: 171 ----EGGEERLEEIVRGHLAPTAKEVLDIWLELCAGGEREVEESEREALEKRDLIVRRKS 226

Query: 207 IEIDLGSSFPRLFGPQVASRVLGEIQKVF 235
           IE+DL S+ PRLFG +VA RV+ EI+  F
Sbjct: 227 IEVDLDSNLPRLFGQEVADRVVAEIRGAF 255

This family consists of several red chlorophyll catabolite reductase (RCC reductase) proteins. Red chlorophyll catabolite (RCC) reductase (RCCR) and pheophorbide (Pheide) a oxygenase (PaO) catalyze the key reaction of chlorophyll catabolism, porphyrin macrocycle cleavage of Pheide a to a primary fluorescent catabolite (pFCC). Length = 255

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	237
PLN02581	267	red chlorophyll catabolite reductase	100.0
PF06405	255	RCC_reductase: Red chlorophyll catabolite reductas	100.0
PRK13248	253	phycoerythrobilin:ferredoxin oxidoreductase; Provi	98.94
PRK13249	257	phycoerythrobilin:ferredoxin oxidoreductase; Provi	98.64
PRK13247	238	dihydrobiliverdin:ferredoxin oxidoreductase; Provi	98.57
PRK13250	248	phycoerythrobilin:ferredoxin oxidoreductase; Provi	98.39
PF05996	228	Fe_bilin_red: Ferredoxin-dependent bilin reductase	98.33
PRK02816	243	phycocyanobilin:ferredoxin oxidoreductase; Validat	98.25
PRK13246	236	dihydrobiliverdin:ferredoxin oxidoreductase; Provi	98.2

>PLN02581 red chlorophyll catabolite reductase

Probab=100.00  E-value=4.8e-107  Score=726.66  Aligned_cols=211  Identities=61%  Similarity=1.054  Sum_probs=206.6

Q ss_pred             cccc---CCCccceeeeccccccCCCCccccceeeheecccCCCCchhhhhhhhcCCceEEEEeecCCccCCCCCchhHH
Q 026566           23 LMIM---DACQIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKDLVLHPDYLQ   99 (237)
Q Consensus        23 L~~~---~gs~IDf~l~SWlh~~lP~G~al~itsL~~~L~~stdaPhfl~ElIq~sPtslvl~LDl~PRkDLvl~pdYl~   99 (237)
                      |.++   +||+|||||||||||+||+||++|||||++|||||||||||+|||||||||||||||||+||||||+||||||
T Consensus        54 l~irsG~~~S~IDf~l~SWlh~~lp~ggalnItsL~~~L~~stdaPhf~~Eliq~sptslv~~LDl~PRkDLvl~pdYl~  133 (267)
T PLN02581         54 LHIRSGAQGSKIDFVLGSWLHCKLPTGGALNITSLSAFLNPSTDAPHFLVELIQSSPTSLVLILDLPPRKDLVLHPDYLK  133 (267)
T ss_pred             EEEecCCCCCceeEEeehhhcCCCCCCccccHHHHHhHhccCCCCCceeeeeeccCCceEEEEeccCCccccccCHHHHH
Confidence            5666   4559999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcccchhHHHHHhhhCCCcccccCccceeeeecCcceEEEEeecccccCCCcccchHHHHhhcchhhHHHHHHHHHhh
Q 026566          100 TFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQ  179 (237)
Q Consensus       100 ~yYE~t~ld~~Rq~lek~Pe~~pYvS~SLyvRs~~SPTAi~~~i~~~~~~~~g~~~~leeiv~~~v~p~A~evl~~WL~~  179 (237)
                      ||||||++|+|||+|+|+||+|||+||||||||++|||||||+|+|    ++|++++|||||++||+|+||+||++||++
T Consensus       134 ~yYe~t~ld~~Rq~l~k~pe~~pY~S~SLyvRs~~SPTAi~~~i~~----~~~~~~~leeiv~~~i~p~a~evl~~WL~~  209 (267)
T PLN02581        134 TYYEDTQLDAHRQKLEKLPQVQPYVSPSLYVRSVVSPTAILVKIDC----EEGGEERLEEIVRDQVAPVAKEVLEIWLDS  209 (267)
T ss_pred             HHhcccccHHHHHHHHhCcccCccccccceeeeccCCceEEEEeec----CCCccccHHHHHHhhhhHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999    888999999999999999999999999999


Q ss_pred             hhcCCcccChhhHHHHHHhhhhhhhhceeeccCCCCCcccChhHHHHHHHHHHhHhcC
Q 026566          180 CACGGRHVGESDKAYLEKRDGLIKNKTIEIDLGSSFPRLFGPQVASRVLGEIQKVFTA  237 (237)
Q Consensus       180 c~~~~~~v~e~Er~~L~kRD~~Ir~k~iE~DL~~nlPRlFG~evadRvv~air~~f~~  237 (237)
                      |+|+++||+|+||++|+|||++||+|+||+||+||||||||||+|||||++|||+|++
T Consensus       210 c~~~~~~~~e~Er~~l~kRD~~Ir~k~iE~Dl~~nlprlFGqevadRvv~air~~~~~  267 (267)
T PLN02581        210 CACLGREMEEEERAYLEKRDRMIRSKSVEVDLSSNMPRLFGQEVADRVVAAIRKAFRV  267 (267)
T ss_pred             hccCCccCcHHHHHHHHHHHHHHHhhceeechhhhhhhHhChHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999999999999985

>PF06405 RCC_reductase: Red chlorophyll catabolite reductase (RCC reductase); InterPro: IPR009439 This family consists of several red chlorophyll catabolite reductase (RCC reductase) proteins

Probab=100.00  E-value=2.5e-104  Score=706.20  Aligned_cols=209  Identities=58%  Similarity=0.993  Sum_probs=182.9

Q ss_pred             cccc---CCCccceeeeccccccCCCCccccceeeheecccCCCCchhhhhhhhcCCceEEEEeecCCccCCCCCchhHH
Q 026566           23 LMIM---DACQIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKDLVLHPDYLQ   99 (237)
Q Consensus        23 L~~~---~gs~IDf~l~SWlh~~lP~G~al~itsL~~~L~~stdaPhfl~ElIq~sPtslvl~LDl~PRkDLvl~pdYl~   99 (237)
                      |.++   +||+|||||||||||++|+||++|||||++||||+||||||+||||||||++|||||||+||||||+|||||+
T Consensus        44 l~vrsG~~~s~IDf~l~SWlh~~lP~~g~lnItsL~v~L~~stdaPhf~~Eliq~sp~~lv~~lDl~PRkDLvl~pdYl~  123 (255)
T PF06405_consen   44 LHVRSGAEGSPIDFMLGSWLHCKLPTGGALNITSLSVFLNPSTDAPHFLFELIQSSPTSLVFYLDLPPRKDLVLHPDYLD  123 (255)
T ss_dssp             EEEEEB-TTSSEEEEEEEEEEEE-TTS-EEEEEEEEEEE-TT--S--EEEEEEESSSSEEEEEEE---SS-TTT-HHHHH
T ss_pred             EEEecCCCCCceeEEEeeeeeecCCCCceeeeheeeeeecccCCCCcEEEEEeecCCCcEEEEEecCcccccccCHHHHH
Confidence            4666   4556999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcccchhHHHHHhhhCCCcccccCccceeeeecCcceEEEEeecccccCCCcccchHHHHhhcchhhHHHHHHHHHhh
Q 026566          100 TFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQ  179 (237)
Q Consensus       100 ~yYE~t~ld~~Rq~lek~Pe~~pYvS~SLyvRs~~SPTAi~~~i~~~~~~~~g~~~~leeiv~~~v~p~A~evl~~WL~~  179 (237)
                      ||||+|+||+|||+|+++||+|||+||||||||++||||+||+|+|    ++|++++|||||++||+|+||+||++|||+
T Consensus       124 ~yYe~t~ld~~R~~le~~pe~~pY~S~SLyvRs~~SPTAi~~~i~~----~~g~~~~leeIv~~~i~p~A~~vl~~WL~~  199 (255)
T PF06405_consen  124 RYYEDTQLDKHRQLLEKLPEFQPYVSSSLYVRSVVSPTAILYSIDC----EEGGEERLEEIVRDHIAPVAKEVLDIWLDS  199 (255)
T ss_dssp             HHTTTTTCHHHHHHHHHSTTEEE---S-HHHHHHS-TT-EEEEEE-----SS--HHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred             HHhcccchhHHHHHHHhCcccCcccCcchhheeccCCceEEEEecc----cccchhhHHHHHHhhhhHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999    889999999999999999999999999999


Q ss_pred             hhcCCcccChhhHHHHHHhhhhhhhhceeeccCCCCCcccChhHHHHHHHHHHhHh
Q 026566          180 CACGGRHVGESDKAYLEKRDGLIKNKTIEIDLGSSFPRLFGPQVASRVLGEIQKVF  235 (237)
Q Consensus       180 c~~~~~~v~e~Er~~L~kRD~~Ir~k~iE~DL~~nlPRlFG~evadRvv~air~~f  235 (237)
                      |+|++++|+|+||++|+|||++||+|+||+||+||||||||||+|||||++|||+|
T Consensus       200 c~~~~~~v~e~Er~~L~~RD~~ir~~~iE~Dl~~~~prlFG~evadrvv~ai~~~f  255 (255)
T PF06405_consen  200 CADEAREVEEEERAALAKRDRMIRRKSIEVDLSSNLPRLFGQEVADRVVAAIRGAF  255 (255)
T ss_dssp             TTSSSSTS-HHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccCCCCCCHHHHHHHHHHHHHHhhceeeeccccchhhhhChHHHHHHHHHHHhhC
Confidence            99999999999999999999999999999999999999999999999999999998

Red chlorophyll catabolite (RCC) reductase (RCCR) and pheophorbide (Pheide) a oxygenase (PaO) catalyse the key reaction of chlorophyll catabolism, porphyrin macrocycle cleavage of Pheide a to a primary fluorescent catabolite (pFCC) [].; PDB: 2ZXK_A 3AGA_B 3AGC_B 2ZXL_A 3AGB_A.

>PRK13248 phycoerythrobilin:ferredoxin oxidoreductase; Provisional

Probab=98.94  E-value=5.3e-09  Score=94.58  Aligned_cols=181  Identities=17%  Similarity=0.291  Sum_probs=141.0

Q ss_pred             CCCccceeeeccccccCC----------CCccccceeeheecccCCCCchhhhhhhhcCCceEEEEeecCCccCCCCCch
Q 026566           27 DACQIDFILGSWVHSELP----------TGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKDLVLHPD   96 (237)
Q Consensus        27 ~gs~IDf~l~SWlh~~lP----------~G~al~itsL~~~L~~stdaPhfl~ElIq~sPtslvl~LDl~PRkDLvl~pd   96 (237)
                      ..++..-++.||.-.+.|          .|.+++|.|..+|=+|..|-|-|+.-|+.+.=.+ ..||||=|=..+-  .+
T Consensus        50 ~~~~~~~~~~sw~~~~~~~~R~~R~~~i~g~~LqVLn~V~fP~p~yDLPiFGaDlV~~~~~~-~aIlDlqPl~~~~--~~  126 (253)
T PRK13248         50 KKSKKNVNLSTWGVTHKKRIQFARAVCINSPNYSVLNFLIIPNTIYNVPFFGVDFVSLPNSH-LLVLDFQPSLKIQ--NQ  126 (253)
T ss_pred             cccCCceEEEeeecccChHHHHHhhheecCCCCeEEEEEecCCCCCCCCccceeeeccCCCc-EEEEECCccccCh--HH
Confidence            345689999999973445          6789999999999999999999999999854445 5589999977332  47


Q ss_pred             hHHHhhcccchhHHHHHhhhCC-------CcccccCccceeeeecCcceEEEEeecccccCCCcccchHHHHhhcchhhH
Q 026566           97 YLQTFYESTRLDEYRQMLEKVP-------EVRPYFSSSLYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVA  169 (237)
Q Consensus        97 Yl~~yYE~t~ld~~Rq~lek~P-------e~~pYvS~SLyvRs~~SPTAi~~~i~~~~~~~~g~~~~leeiv~~~v~p~A  169 (237)
                      |.++||+...-=.. +.-+.+|       +..+|+          ||-.+..+...    ++++    .++|++.+-+..
T Consensus       127 Y~~~~~~~L~~l~~-~~~~~lP~~g~~~~e~~~~F----------Sp~~Lf~R~~~----~~e~----~~~ie~~~~~af  187 (253)
T PRK13248        127 YNNELLEKLIKLKN-HCHSSLPLAEKMSADVARFF----------SPGVIWSKLPK----EERS----DFLIENQLYTSF  187 (253)
T ss_pred             HHHHHHhhccchhh-hhHhhCCCCCcCcchhHhhC----------CCceEEEecCC----cccc----hhhHHHHHHHHH
Confidence            99999998755432 3457889       666666          55556666665    2222    256777799999


Q ss_pred             HHHHHHHHhhhhcCCcccChhhHHHHHHhhhhhhhhceeeccCCCC-CcccChhHHHHHHHH
Q 026566          170 KQVIGIWLNQCACGGRHVGESDKAYLEKRDGLIKNKTIEIDLGSSF-PRLFGPQVASRVLGE  230 (237)
Q Consensus       170 ~evl~~WL~~c~~~~~~v~e~Er~~L~kRD~~Ir~k~iE~DL~~nl-PRlFG~evadRvv~a  230 (237)
                      ++-|++|++- +..+.+++.++.+.+.++..--=.-..|.|++.-| -|+||+|=|||.++.
T Consensus       188 ~~YL~~y~~l-~~~a~~~~~~~~~~i~~~Q~~Y~~yqaenDpar~vL~k~FG~eWae~yI~~  248 (253)
T PRK13248        188 KEYLDLYLEI-LFESKEVNIGLQKELINGQNNYLNYRRDNDPARPMLSSLFGKEFTESLINE  248 (253)
T ss_pred             HHHHHHHHHH-HHhCCCCCcccHHHHHHHHHHHHHHHHHcCcHHHHHHHHcChHHHHHHHHh
Confidence            9999999998 67778877766666666666666778899999998 999999999999875

>PRK13249 phycoerythrobilin:ferredoxin oxidoreductase; Provisional

Probab=98.64  E-value=1.3e-07  Score=85.75  Aligned_cols=183  Identities=16%  Similarity=0.229  Sum_probs=135.0

Q ss_pred             cceeeecccc---------ccCCC-CccccceeeheecccCCCCchhhhhhhhcCCceEEEEeecCCccCCCCCchhHHH
Q 026566           31 IDFILGSWVH---------SELPT-GAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKDLVLHPDYLQT  100 (237)
Q Consensus        31 IDf~l~SWlh---------~~lP~-G~al~itsL~~~L~~stdaPhfl~ElIq~sPtslvl~LDl~PRkDLvl~pdYl~~  100 (237)
                      .--...+|.-         ++.=. |.++.|.|..+|=+|..|.|-|+.-|+. .|..-.+.+|+=|=.+-  .|+|.++
T Consensus        58 ~~i~~~~~~~~~~~fRk~r~~~~~~G~~lqVLn~V~fP~p~yDLPiFGaDlv~-~~~~~~lalDlqPl~~~--~~~~~~~  134 (257)
T PRK13249         58 VKVTTATWACKTEKIRQVRAACVEAGEAASVLNFVINPSNRFDLPFFGADLVT-LPNGHLLALDLQPALKT--DEIHTQH  134 (257)
T ss_pred             ceEEEeeeccCChHHHHHHHHHhhcCCCcEEEEEEecCCcCCCCCccceeeee-cCCceEEEEecCccccc--cHHHHHH
Confidence            5556667754         22223 7899999999999999999999999987 77776677999996532  5999999


Q ss_pred             hhcccchhHHHHH-hhhCCCcccccCccceeeeecCcceEEEEeecccccCCCcccchHHHHhhcchhhHHHHHHHHHhh
Q 026566          101 FYESTRLDEYRQM-LEKVPEVRPYFSSSLYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQ  179 (237)
Q Consensus       101 yYE~t~ld~~Rq~-lek~Pe~~pYvS~SLyvRs~~SPTAi~~~i~~~~~~~~g~~~~leeiv~~~v~p~A~evl~~WL~~  179 (237)
                      |++...-.  .+. -+++|.--.-.+   =.+..+||-.+..+...    ++++.    ..|...|.|.-++-|+.|++-
T Consensus       135 y~~~L~~~--~~~~~~~lP~~g~i~~---e~~~fFSp~~lf~Rp~~----~~e~~----~~~~~~l~~AF~~YL~~~~~l  201 (257)
T PRK13249        135 VWERLMPI--FEHWQSKLPSGGPIPE---EAQPYFSPGFLWTRLPL----GEEGD----NLISEVIRPAFDEYLNLYLDL  201 (257)
T ss_pred             HHHHHHHH--HHhhHHhCCCcCCccc---hhhhcCCCceEEEecCC----ccchh----HHHHHHHHHHHHHHHHHHHHH
Confidence            99887332  333 344555432211   11233477777788776    33332    345556899999999999998


Q ss_pred             hhcCCcccChhhHHHHHHhhhhhhhhceeeccCCCC-CcccChhHHHHHHHH
Q 026566          180 CACGGRHVGESDKAYLEKRDGLIKNKTIEIDLGSSF-PRLFGPQVASRVLGE  230 (237)
Q Consensus       180 c~~~~~~v~e~Er~~L~kRD~~Ir~k~iE~DL~~nl-PRlFG~evadRvv~a  230 (237)
                       +..+.+++.++...+.+...--=.-..|.|++.-| -|+||+|-|+|.++.
T Consensus       202 -~~~a~~~~~~~~~~i~~~Q~~Y~~yqaenDpar~vL~k~FG~eWae~yi~~  252 (257)
T PRK13249        202 -VEEAKPVSKERAFKLLEGQKRYTSYRAEKDPARGMLTRFHGSEWTESYIHN  252 (257)
T ss_pred             -HHhCCCCChhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHhCHHHHHHHHHh
Confidence             67888887777777777666666778999999998 999999999999875

>PRK13247 dihydrobiliverdin:ferredoxin oxidoreductase; Provisional

Probab=98.57  E-value=3.6e-07  Score=81.90  Aligned_cols=184  Identities=18%  Similarity=0.243  Sum_probs=130.0

Q ss_pred             ccccccCCCccceeeeccccccCC-----------CCccccceeeheecccCCCCchhhhhhhhcCCceEEE--EeecCC
Q 026566           21 NNLMIMDACQIDFILGSWVHSELP-----------TGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVL--ILDLSP   87 (237)
Q Consensus        21 ~~L~~~~gs~IDf~l~SWlh~~lP-----------~G~al~itsL~~~L~~stdaPhfl~ElIq~sPtslvl--~LDl~P   87 (237)
                      .+|.-..|.....++.+|+++. |           -|.+++|.|..+|=+|..|.|=|++-|+. .|.+-++  |+|+=|
T Consensus        25 ~~l~~~~~~~~~~~i~n~~~q~-~~fRk~r~~~~~~G~~lqVLn~V~fP~~~yDLPifG~Dlv~-~~~~~~laAIlDlqP  102 (238)
T PRK13247         25 AGLEECVSEKGNAVIRSWLWQV-PGFRRWRVTRLDAGDSLQVLNSVAYPDYNYDLPLMGIDLLW-FGKKQKLVAVLDFQP  102 (238)
T ss_pred             hhHhhhhcccCceEEEeeeecC-chHHHHHHHHhhcCCCcEEEEEEecCCCCCCCCccceeEee-cCCCceEEEEEecCC
Confidence            3333334455589999998642 4           37899999999999999999999999998 5644433  699999


Q ss_pred             ccCCCCCchhHHHhhcccchhHHHH---HhhhCCCcccccCccceeeeecCcceEEEEeecccccCCCcccchHHHHhhc
Q 026566           88 RKDLVLHPDYLQTFYESTRLDEYRQ---MLEKVPEVRPYFSSSLYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNH  164 (237)
Q Consensus        88 RkDLvl~pdYl~~yYE~t~ld~~Rq---~lek~Pe~~pYvS~SLyvRs~~SPTAi~~~i~~~~~~~~g~~~~leeiv~~~  164 (237)
                      =.   -+.+|.++||+..  ....+   .+...-+.++|-     ....+||-.+..+-..             +.+.+.
T Consensus       103 l~---~~~~~~~~y~~~L--~~l~~~~~~~~~~~~~~~~d-----~~~~FSp~~lf~R~~~-------------~~~~~~  159 (238)
T PRK13247        103 LV---QDKDYLDRYFEGL--KSLKERFPDLNSEETMRFYD-----PNQYFSPWLLFCKGGA-------------ETATNS  159 (238)
T ss_pred             CC---cchhhhHHHHHHH--HHHHHhhHhhcCCCCCCCcc-----ccccCCCceEEeeCCc-------------HHHHHH
Confidence            54   4569999999774  43333   222222222221     1223466666655432             234566


Q ss_pred             chhhHHHHHHHHHhhhhcCCcccC-hhhHHHHHHhhhhhhhhceeeccCCCC-CcccChhHHHHHHHH
Q 026566          165 VHPVAKQVIGIWLNQCACGGRHVG-ESDKAYLEKRDGLIKNKTIEIDLGSSF-PRLFGPQVASRVLGE  230 (237)
Q Consensus       165 v~p~A~evl~~WL~~c~~~~~~v~-e~Er~~L~kRD~~Ir~k~iE~DL~~nl-PRlFG~evadRvv~a  230 (237)
                      +-+..++-|+.|++- ++.+.+++ ..+.+.+.+...--=.-..|.|++.-| -|+||+|-|+|.++.
T Consensus       160 l~~af~~YL~~~~~~-~~~a~~~~~~~~~~~i~~~Q~~Y~~yqaenDpar~~L~~~FG~~Wae~yi~~  226 (238)
T PRK13247        160 LPKAFSAFLKAYWQL-HDNAKKITSTIEIQEVVQLQIDYDIYSAERDPAHGLFSSYFGKEWSERFLHE  226 (238)
T ss_pred             HHHHHHHHHHHHHHH-HHhCCCCCChhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHcChHHHHHHHHh
Confidence            899999999999998 68888875 555555555555555677899999988 999999999999875

>PRK13250 phycoerythrobilin:ferredoxin oxidoreductase; Provisional

Probab=98.39  E-value=1.4e-06  Score=78.65  Aligned_cols=174  Identities=18%  Similarity=0.272  Sum_probs=130.2

Q ss_pred             CccceeeeccccccCC-----------CCccccceeeheecccCCCCchhhhhhhhcCCceEEEEeecCCccCCCCCchh
Q 026566           29 CQIDFILGSWVHSELP-----------TGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKDLVLHPDY   97 (237)
Q Consensus        29 s~IDf~l~SWlh~~lP-----------~G~al~itsL~~~L~~stdaPhfl~ElIq~sPtslvl~LDl~PRkDLvl~pdY   97 (237)
                      ..-..++.+|+++. |           -|.++.|.|..+|=+|..|.|=|++-|+. .|..-..++|+=|=.+  -.++|
T Consensus        42 ~~~~~~i~n~~~q~-~~fRk~r~~~~~~G~~lqVLn~V~fP~p~yDLPiFGaDlv~-~~~~~laalDlqPl~~--~~~~Y  117 (248)
T PRK13250         42 KQEEVVTTSYAFQS-PKLRQIRAAHVQGGSALQVLNFVIFPHLNYDLPFFGADLVT-LPGGHLIALDMQPLFR--DDPAY  117 (248)
T ss_pred             cCCceEEeehhhcC-cHHHHHHHHHHhcCCCcEEEEEEecCCcCCCCCccceeeee-cCCceEEEEECCcccC--cHHHH
Confidence            44778999998642 4           37899999999999999999999999988 6655544599999754  12799


Q ss_pred             HHHhhcccchhHHHHHhhhCCC--------cccccCccceeeeecCcceEEEEeecccccCCCcccchHHHHhhcchhhH
Q 026566           98 LQTFYESTRLDEYRQMLEKVPE--------VRPYFSSSLYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVA  169 (237)
Q Consensus        98 l~~yYE~t~ld~~Rq~lek~Pe--------~~pYvS~SLyvRs~~SPTAi~~~i~~~~~~~~g~~~~leeiv~~~v~p~A  169 (237)
                      .++|++...--  .+...++|.        +++|+          ||-.+..+...        .    +.|++.+-+..
T Consensus       118 ~~~~~~~l~~~--~~~~r~l~~wg~~~~~e~~~~F----------Sp~~lf~Rp~~--------~----~~~e~~lf~af  173 (248)
T PRK13250        118 QAKYTEPILPL--FNAHQAHLPWGGDFPEEAKPFF----------SPAFLWTRPQE--------T----EVVETRVFEAF  173 (248)
T ss_pred             HHHHHHhhHHH--HhhhhhcCCccccCcchhHhhc----------CCceEEEecCC--------h----hHHHHHHHHHH
Confidence            99999976433  556666653        22344          66666666542        1    24455588889


Q ss_pred             HHHHHHHHhhhhcCCcccChhh-HHHHHHhhhhhhhhceeeccCCCC-CcccChhHHHHHHHHH
Q 026566          170 KQVIGIWLNQCACGGRHVGESD-KAYLEKRDGLIKNKTIEIDLGSSF-PRLFGPQVASRVLGEI  231 (237)
Q Consensus       170 ~evl~~WL~~c~~~~~~v~e~E-r~~L~kRD~~Ir~k~iE~DL~~nl-PRlFG~evadRvv~ai  231 (237)
                      ++-|+.|++- +..+.+++..+ .+...+...--=.-..|.|++.-| -|+||+|-|||.++.+
T Consensus       174 ~~YL~~y~~~-~~~a~~~~~~~~~~~i~~~Q~~Y~~yqaenDpar~vL~k~FG~eWae~yi~~~  236 (248)
T PRK13250        174 KDYLQAYLDF-VEQAEAVTDSEQLAEILQAQLRYLRYRAEKDPARGMFTRFYGEEWTEEYIHGF  236 (248)
T ss_pred             HHHHHHHHHH-HHhCCCCCChhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHhChHHHHHHHHhc
Confidence            9999999998 68888886666 444555555555678899999998 9999999999998753

>PF05996 Fe_bilin_red: Ferredoxin-dependent bilin reductase; InterPro: IPR009249 This family consists of several different but closely related proteins which include phycocyanobilin:ferredoxin oxidoreductase 1

Probab=98.33  E-value=5.5e-07  Score=79.38  Aligned_cols=176  Identities=19%  Similarity=0.230  Sum_probs=115.2

Q ss_pred             ceeeecccccc---------CC-CCccccceeeheecccCCCCchhhhhhhhcCCce-EEE-EeecCCccCCCCCchhHH
Q 026566           32 DFILGSWVHSE---------LP-TGAALNITSLSAYLNSSTDAPNLLIELIQSSPSS-LVL-ILDLSPRKDLVLHPDYLQ   99 (237)
Q Consensus        32 Df~l~SWlh~~---------lP-~G~al~itsL~~~L~~stdaPhfl~ElIq~sPts-lvl-~LDl~PRkDLvl~pdYl~   99 (237)
                      +..+.+|.++.         += .|.+++|.|..+|=+++.|.|=|++.++. .|.. .++ |+|+-|=   ..+.+|..
T Consensus        34 ~~~i~n~~~q~~~fRk~r~~~~~~g~~lqVL~~V~yP~~~ydLPiFG~Dlv~-~~~~~~~~ailDl~P~---~~~~~l~~  109 (228)
T PF05996_consen   34 RLVIENWCYQSPKFRKLRLERADAGEGLQVLNCVIYPRPEYDLPIFGADLVA-FPGKRISAAILDLQPL---SQDRDLPE  109 (228)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEETTTEEEEEEEEEE-TTS---EEEEEEEE-ETTETEEEEEEEEE-S---STTSHHCH
T ss_pred             hHHHHhhhhcccHHHHHHHHHhhcCCCcEEEEEEEcCCCCCCCCcccceeee-eCCccEEEEEEeCCCC---CCcccchH
Confidence            67777776442         22 37799999999999999999999999988 5545 555 7999885   55667999


Q ss_pred             HhhcccchhHHHHH-hhhCCCcccccCccceeeeecCcceEEEEeecccccCCCcccchHHHHhhcchhhHHHHHHHHHh
Q 026566          100 TFYESTRLDEYRQM-LEKVPEVRPYFSSSLYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLN  178 (237)
Q Consensus       100 ~yYE~t~ld~~Rq~-lek~Pe~~pYvS~SLyvRs~~SPTAi~~~i~~~~~~~~g~~~~leeiv~~~v~p~A~evl~~WL~  178 (237)
                      +|++.-.-=  ++. .+..|+-+....-+.   ..+||-.+..+-..             +.+.+.+-+..++-|+.|++
T Consensus       110 ~y~~~L~~l--~~~~~~~~~~~~~lp~w~~---~iFSp~~lf~r~~~-------------~~~~~~~~~af~~yl~~~~~  171 (228)
T PF05996_consen  110 KYYSKLAPL--PEKYQELFPEPRKLPEWGN---QIFSPWCLFIRPSN-------------PEEEEQFLSAFKEYLQAYLE  171 (228)
T ss_dssp             HHHHHHHTS--HHH-TT--SSBTSSSGGCG---SCS-TT-EEEEEES-------------HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH--HHHHHhhccccccCchhHH---HhCCCceEEeeCCC-------------HHHHHHHHHHHHHHHHHHHH
Confidence            998854333  221 222333332222222   12266666666322             23445588999999999999


Q ss_pred             hhhcCCccc-ChhhHHHHHHhhhhhhhhceeeccCCCC-CcccChhHHHHHHHH
Q 026566          179 QCACGGRHV-GESDKAYLEKRDGLIKNKTIEIDLGSSF-PRLFGPQVASRVLGE  230 (237)
Q Consensus       179 ~c~~~~~~v-~e~Er~~L~kRD~~Ir~k~iE~DL~~nl-PRlFG~evadRvv~a  230 (237)
                      . +..+.++ +.++......+-.---+...|.|++-.+ -+.||+|-|+|.+..
T Consensus       172 ~-~~~a~~~~~~~~~~~~~~~Q~~Y~~~q~~nDptr~vL~~~FG~~wae~yi~~  224 (228)
T PF05996_consen  172 L-VEQAEPVTDPERIAERLEAQHRYCQYQAENDPTRRVLEKAFGEEWAERYINE  224 (228)
T ss_dssp             H-HHHHTCSB-HHHHHHHHHHHHHHHHHHHHHCTHHHHHHHHH-HHHHHHHHHH
T ss_pred             H-HHhCCCcCCHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhChHHHHHHHHH
Confidence            7 5666665 5666666666666666778889999988 999999999999875

3.7.5 from EC (PcyA), 15,16-dihydrobiliverdin:ferredoxin oxidoreductase 1.3.7.2 from EC (PebA) and phycoerythrobilin:ferredoxin oxidoreductase 1.3.7.3 from EC (PebB). Phytobilins are linear tetrapyrrole precursors of the light-harvesting prosthetic groups of the phytochrome photoreceptors of plants and the phycobiliprotein photosynthetic antennae of cyanobacteria, red algae, and cryptomonads. It is known that that phytobilins are synthesised from haem via the intermediacy of biliverdin IX alpha (BV), which is reduced subsequently by ferredoxin-dependent bilin reductases with different double-bond specificities [].; GO: 0016636 oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor, 0050897 cobalt ion binding, 0010024 phytochromobilin biosynthetic process, 0055114 oxidation-reduction process; PDB: 3I8U_X 3AJH_A 3NB9_A 3I94_A 2DKE_A 3NB8_A 3F0M_A 3AJG_A 3I95_A 2D1E_A ....

>PRK02816 phycocyanobilin:ferredoxin oxidoreductase; Validated

Probab=98.25  E-value=3.2e-06  Score=76.01  Aligned_cols=172  Identities=16%  Similarity=0.202  Sum_probs=121.0

Q ss_pred             ccceeeeccccccCC-----------CCccccceeeheecccCCCCchhhhhhhhcCCceE-EEEeecCCccCCCCCchh
Q 026566           30 QIDFILGSWVHSELP-----------TGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSL-VLILDLSPRKDLVLHPDY   97 (237)
Q Consensus        30 ~IDf~l~SWlh~~lP-----------~G~al~itsL~~~L~~stdaPhfl~ElIq~sPtsl-vl~LDl~PRkDLvl~pdY   97 (237)
                      .-...+++|.++. |           -|.++.|.|..+|=+|..|.|=|++-++. +|... ..|+|+-|=.. -+..+|
T Consensus        51 ~~~l~I~n~~~q~-~~fRk~hle~~~~G~~lqVLn~V~fP~~~yDlPiFGaDlv~-~~~~~slaIlDlqPl~~-~~~~~Y  127 (243)
T PRK02816         51 GEKLFIENECYQA-PGFRKLHLELARLGNGLDILHCVMFPDPRYDLPIFGADLVA-GRGGISAAIVDLSPVSR-TLPDAY  127 (243)
T ss_pred             CCeeEEEEeeecc-cchhhhheeeeccCCCceEEEEEecCCCCCCCCccceeEee-cCCceeEEEEecCcccc-cchHHH
Confidence            3467788887542 3           27899999999999999999999999998 55454 45899999651 223478


Q ss_pred             HHHhhcccchhHHHHHhhhCCCcccccCccceeeeecCcceEEEEeecccccCCCcccchHHHHhhcchhhHHHHHHHHH
Q 026566           98 LQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWL  177 (237)
Q Consensus        98 l~~yYE~t~ld~~Rq~lek~Pe~~pYvS~SLyvRs~~SPTAi~~~i~~~~~~~~g~~~~leeiv~~~v~p~A~evl~~WL  177 (237)
                      .+++ ++...- ..+...++|+---          .+||-.++.+-..         +    -.++.+-+..++-|+.|+
T Consensus       128 ~~~l-~~l~~~-~f~~~r~lp~wg~----------~FSp~~lf~R~~~---------~----~e~~~~~~~f~~yL~~~~  182 (243)
T PRK02816        128 IKAL-SALPKP-AFSQPRELPEWGD----------IFSPYCLFIRPTN---------A----EEENQFLDRVDEYLSIHC  182 (243)
T ss_pred             HHHH-Hhhcch-hhhccccCCCccC----------ccCcceEEecCCC---------H----HHHHHHHHHHHHHHHHHH
Confidence            8877 554332 2334455544332          5577777777443         1    112347789999999999


Q ss_pred             hhhhcCCcccC-hhhHHHHHHhhhhhhhhceeeccCCCC-CcccChhHHHHHHHH
Q 026566          178 NQCACGGRHVG-ESDKAYLEKRDGLIKNKTIEIDLGSSF-PRLFGPQVASRVLGE  230 (237)
Q Consensus       178 ~~c~~~~~~v~-e~Er~~L~kRD~~Ir~k~iE~DL~~nl-PRlFG~evadRvv~a  230 (237)
                      +- +..+.|+. .++.+...+..+--=....|.|++.-| -|.||++-|||-++.
T Consensus       183 ~~-~~~a~p~~~~~~~~~~~~~Q~~Y~~~q~enDptr~vL~~~FG~~Wae~yi~~  236 (243)
T PRK02816        183 QL-AIAAQPDSDSEQIIERLAGQKNYCLQQKRNDKTRRVLEKAFGPEWADRYITT  236 (243)
T ss_pred             HH-HHhCCCCCCchhHHHHHHHHHHHHHHHHHcCcHHHHHHHHcChHHHHHHHHh
Confidence            98 67777776 444444444444444667899999988 999999999999875

>PRK13246 dihydrobiliverdin:ferredoxin oxidoreductase; Provisional

Probab=98.20  E-value=5.5e-06  Score=74.55  Aligned_cols=186  Identities=16%  Similarity=0.276  Sum_probs=130.0

Q ss_pred             eeeeccccccCCCccceeeeccccccCC-----------CCccccceeeheecccCCCCchhhhhhhh-cCCceEEEEee
Q 026566           17 YMVFNNLMIMDACQIDFILGSWVHSELP-----------TGAALNITSLSAYLNSSTDAPNLLIELIQ-SSPSSLVLILD   84 (237)
Q Consensus        17 ~~~~~~L~~~~gs~IDf~l~SWlh~~lP-----------~G~al~itsL~~~L~~stdaPhfl~ElIq-~sPtslvl~LD   84 (237)
                      |-|=.+.....+..-..++.+|+++. |           -|.+++|.|..+|=+|..|.|=|+.-|+. |.-.-++-|+|
T Consensus        21 ~~i~~~f~~~~~~~~~~~I~n~~~q~-~~fRk~r~~~~~~G~~lqVLn~V~fP~p~yDLPifG~Dlv~f~~~~~~aaIlD   99 (236)
T PRK13246         21 LQISKEFKEHHNKDSKYIIKNWLFSS-PEYRKWRITRLDGGKKLQVFNTVAYPNFKSELPILGADILWFGTSQKLLAILD   99 (236)
T ss_pred             ccCchhHHHHhcCCCceEEEeehhcC-chHHHHHHHHhhcCCCcEEEEEEecCCCCCCCCccceeeeecCCCceEEEEEe
Confidence            33333444445566788999998642 4           37899999999999999999999999987 54444777899


Q ss_pred             cCCccCCCCCchhHHHhhcccchhHH-HHH-----hhhCCCcccccCcc-ceeeeecCcceEEEEeecccccCCCcccch
Q 026566           85 LSPRKDLVLHPDYLQTFYESTRLDEY-RQM-----LEKVPEVRPYFSSS-LYLRCVISPSAIMVRVDTETETGAGESTRL  157 (237)
Q Consensus        85 l~PRkDLvl~pdYl~~yYE~t~ld~~-Rq~-----lek~Pe~~pYvS~S-LyvRs~~SPTAi~~~i~~~~~~~~g~~~~l  157 (237)
                      |=|=   ..+.+|.++||+.-.-=.+ +..     -.+.|+..+|+||- ||+|    |.+                +  
T Consensus       100 lqPl---~~d~~y~~~y~~~L~~L~~~~~~~~~~~~r~~~e~~~~FSp~~lf~R----~~~----------------~--  154 (236)
T PRK13246        100 YQPL---IQEKKYLEKYCSSLGFIKKKYSAFDNNKMKNIYDSKKYFSPWVIICR----GNK----------------L--  154 (236)
T ss_pred             CCCc---ccchhhhHHHHHHHHHHHHhhHhhCcccCCCCcchHhhcCCceEEEe----cCC----------------c--
Confidence            9995   5578999999988532211 122     23678888888874 4555    111                1  


Q ss_pred             HHHHhhcchhhHHHHHHHHHhhhhcCCcccChhhHHHHHHhhhhhhhhceeeccCCCC-CcccChhHHHHHHHHH
Q 026566          158 DYIITNHVHPVAKQVIGIWLNQCACGGRHVGESDKAYLEKRDGLIKNKTIEIDLGSSF-PRLFGPQVASRVLGEI  231 (237)
Q Consensus       158 eeiv~~~v~p~A~evl~~WL~~c~~~~~~v~e~Er~~L~kRD~~Ir~k~iE~DL~~nl-PRlFG~evadRvv~ai  231 (237)
                        .|...+.+.=.+.++-+|+- .+.+...++.+.+.+.++..--=+-..|.|++..| -|+||+|=|+|.|+.+
T Consensus       155 --~~~~~~~~~F~~~v~~Yl~i-~~~~~~~~~~~~~~i~~~Q~~Y~~yqaenDpar~vL~k~FG~~Wae~yI~~~  226 (236)
T PRK13246        155 --NLDRDLNNIFHSFVNNYLNI-NKSNPVNQFLNLEEIKINQIKYDKYSFEKDPADKLFKSFFGEKWTKKFINKF  226 (236)
T ss_pred             --cccHHHHHHHHHHHHHHHHH-HHhcccCCccCHHHHHHHHHHHHHHHHHcCcHHHHHHHHhChHHHHHHHHhc
Confidence              22333556667777777766 35444444445555565555555678899999998 9999999999998753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	237
3agb_A	276	F218v Mutant Of The Substrate-Free Form Of Red Chlo		5e-54
2zxl_A	285	Crystal Structure Of Red Chlorophyll Catabolite Red		9e-54
3aga_A	276	Crystal Structure Of Rcc-Bound Red Chlorophyll Cata		1e-53
2zxk_A	285	Crystal Structure Of Semet-Red Chlorophyll Cataboli		2e-52

>pdb|3AGB|A Chain A, F218v Mutant Of The Substrate-Free Form Of Red Chlorophyll Catabolite Reductase From Arabidopsis Thaliana Length = 276

Iteration: 1
 Score =  207 bits (526), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 106/208 (50%), Positives = 148/208 (71%), Gaps = 9/208 (4%)
Query: 31  IDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKD 90
           IDF++GSW+H ++PTG +LNITS+S +LNSST APN ++ELIQSS  SLVLILDL  RKD
Sbjct: 72  IDFVIGSWIHCKIPTGVSLNITSISGFLNSSTKAPNFVVELIQSSSKSLVLILDLPHRKD 131
Query: 91  LVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIMVRVDTETETG 150
           LVL+PDYL+ +Y+ T LD +RQ L K+PEV PY S SL++R  +SP+A M+++D E    
Sbjct: 132 LVLNPDYLKEYYQDTALDSHRQSLLKLPEVNPYVSPSLFVRSAVSPTASMLKIDAE---- 187
Query: 151 AGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRH---VGESDKAYLEKRDGLIKNKTI 207
             E  +L+ I+ +HV P AK+V+ +WL +C         VGE ++  LE+RD   + K+I
Sbjct: 188 --EEDKLEEILRDHVSPAAKEVLEVWLERCVKEEEEKIVVGEEERMELERRDKSFRRKSI 245
Query: 208 EIDLGSSFPRLFGPQVASRVLGEIQKVF 235
           E DL   FPR+FG +V+SRV+  I++ F
Sbjct: 246 EDDLDLQFPRMFGEEVSSRVVHAIKEAF 273

>pdb|2ZXL|A Chain A, Crystal Structure Of Red Chlorophyll Catabolite Reductase From Arabidopsis Thaliana Length = 285

Iteration: 1
 Score =  206 bits (524), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 106/208 (50%), Positives = 147/208 (70%), Gaps = 9/208 (4%)
Query: 31  IDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKD 90
           IDF++GSW+H ++PTG +LNITS+S +LNSST APN ++ELIQSS  SLVLILDL  RKD
Sbjct: 81  IDFVIGSWIHCKIPTGVSLNITSISGFLNSSTKAPNFVVELIQSSSKSLVLILDLPHRKD 140
Query: 91  LVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIMVRVDTETETG 150
           LVL+PDYL+ +Y+ T LD +RQ L K+PEV PY S SL++R   SP+A M+++D E    
Sbjct: 141 LVLNPDYLKEYYQDTALDSHRQSLLKLPEVNPYVSPSLFVRSAFSPTASMLKIDAE---- 196
Query: 151 AGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRH---VGESDKAYLEKRDGLIKNKTI 207
             E  +L+ I+ +HV P AK+V+ +WL +C         VGE ++  LE+RD   + K+I
Sbjct: 197 --EEDKLEEILRDHVSPAAKEVLEVWLERCVKEEEEKIVVGEEERMELERRDKSFRRKSI 254
Query: 208 EIDLGSSFPRLFGPQVASRVLGEIQKVF 235
           E DL   FPR+FG +V+SRV+  I++ F
Sbjct: 255 EDDLDLQFPRMFGEEVSSRVVHAIKEAF 282

>pdb|3AGA|A Chain A, Crystal Structure Of Rcc-Bound Red Chlorophyll Catabolite Reductase From Arabidopsis Thaliana Length = 276

Iteration: 1
 Score =  206 bits (524), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 106/208 (50%), Positives = 147/208 (70%), Gaps = 9/208 (4%)
Query: 31  IDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKD 90
           IDF++GSW+H ++PTG +LNITS+S +LNSST APN ++ELIQSS  SLVLILDL  RKD
Sbjct: 72  IDFVIGSWIHCKIPTGVSLNITSISGFLNSSTKAPNFVVELIQSSSKSLVLILDLPHRKD 131
Query: 91  LVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIMVRVDTETETG 150
           LVL+PDYL+ +Y+ T LD +RQ L K+PEV PY S SL++R   SP+A M+++D E    
Sbjct: 132 LVLNPDYLKEYYQDTALDSHRQSLLKLPEVNPYVSPSLFVRSAFSPTASMLKIDAE---- 187
Query: 151 AGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRH---VGESDKAYLEKRDGLIKNKTI 207
             E  +L+ I+ +HV P AK+V+ +WL +C         VGE ++  LE+RD   + K+I
Sbjct: 188 --EEDKLEEILRDHVSPAAKEVLEVWLERCVKEEEEKIVVGEEERMELERRDKSFRRKSI 245
Query: 208 EIDLGSSFPRLFGPQVASRVLGEIQKVF 235
           E DL   FPR+FG +V+SRV+  I++ F
Sbjct: 246 EDDLDLQFPRMFGEEVSSRVVHAIKEAF 273

>pdb|2ZXK|A Chain A, Crystal Structure Of Semet-Red Chlorophyll Catabolite Reductase Length = 285

Iteration: 1
 Score =  202 bits (513), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 105/208 (50%), Positives = 145/208 (69%), Gaps = 9/208 (4%)
Query: 31  IDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKD 90
           IDF++GSW+H ++PTG +LNITS+S +LNSST APN ++ELIQSS  SLVLILDL  RKD
Sbjct: 81  IDFVIGSWIHCKIPTGVSLNITSISGFLNSSTKAPNFVVELIQSSSKSLVLILDLPHRKD 140
Query: 91  LVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIMVRVDTETETG 150
           LVL+PDYL+ +Y+ T LD +RQ L K+PEV PY S SL++R   SP+A  +++D E    
Sbjct: 141 LVLNPDYLKEYYQDTALDSHRQSLLKLPEVNPYVSPSLFVRSAFSPTASXLKIDAE---- 196
Query: 151 AGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRH---VGESDKAYLEKRDGLIKNKTI 207
             E  +L+ I+ +HV P AK+V+ +WL +C         VGE ++  LE+RD   + K+I
Sbjct: 197 --EEDKLEEILRDHVSPAAKEVLEVWLERCVKEEEEKIVVGEEERXELERRDKSFRRKSI 254
Query: 208 EIDLGSSFPRLFGPQVASRVLGEIQKVF 235
           E DL   FPR FG +V+SRV+  I++ F
Sbjct: 255 EDDLDLQFPRXFGEEVSSRVVHAIKEAF 282

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	237
3agc_A	276	RED chlorophyll catabolite reductase, chloroplast;	1e-76

>3agc_A RED chlorophyll catabolite reductase, chloroplast; chlorophyll degradation, substrate-bound enzyme, chlorophyll catabolism, NADP; HET: RCC; 2.00A {Arabidopsis thaliana} PDB: 3agb_A* 3aga_A* 2zxl_A 2zxk_A Length = 276

 Score =  231 bits (590), Expect = 1e-76
 Identities = 105/210 (50%), Positives = 147/210 (70%), Gaps = 9/210 (4%)

Query: 30  QIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRK 89
            IDF++GSW+H ++PTG +LNITS+S +LNSST APN ++ELIQSS  SLVLILDL  RK
Sbjct: 71  PIDFVIGSWIHCKIPTGVSLNITSISGFLNSSTKAPNFVVELIQSSSKSLVLILDLPHRK 130

Query: 90  DLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIMVRVDTETET 149
           DLVL+PDYL+ +Y+ T LD +RQ L K+PEV PY S SL++R  +SP+A M+++D     
Sbjct: 131 DLVLNPDYLKEYYQDTALDSHRQSLLKLPEVNPYVSPSLFVRSAVSPTASMLKIDA---- 186

Query: 150 GAGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGR---HVGESDKAYLEKRDGLIKNKT 206
              E  +L+ I+ +HV P AK+V+ +WL +C         VGE ++  LE+RD   + K+
Sbjct: 187 --EEEDKLEEILRDHVSPAAKEVLEVWLERCVKEEEEKIVVGEEERMELERRDKSFRRKS 244

Query: 207 IEIDLGSSFPRLFGPQVASRVLGEIQKVFT 236
           IE DL   FPR+FG +V+SRV+  I++ F 
Sbjct: 245 IEDDLDLQFPRMFGEEVSSRVVHAIKEAFG 274

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	237
3agc_A	276	RED chlorophyll catabolite reductase, chloroplast;	100.0
2x9o_A	244	15,16- dihydrobiliverdin-ferredoxin oxidoreductas;	99.58
3i94_A	248	Phycocyanobilin:ferredoxin oxidoreductase; alpha-b	98.54
2vcl_A	233	Cyanobacterial phycoerythrobilin; cyanophages, bil	97.94
2g18_A	253	Phycocyanobilin:ferredoxin oxidoreductase; alpha-b	97.78

>3agc_A RED chlorophyll catabolite reductase, chloroplast; chlorophyll degradation, substrate-bound enzyme, chlorophyll catabolism, NADP; HET: RCC; 2.00A {Arabidopsis thaliana} PDB: 3agb_A* 3aga_A* 2zxl_A 2zxk_A

Probab=100.00  E-value=3.4e-84  Score=581.19  Aligned_cols=209  Identities=51%  Similarity=0.886  Sum_probs=202.5

Q ss_pred             cccc---CCCccceeeeccccccCCCCccccceeeheecccCCCCchhhhhhhhcCCceEEEEeecCCccCCCCCchhHH
Q 026566           23 LMIM---DACQIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKDLVLHPDYLQ   99 (237)
Q Consensus        23 L~~~---~gs~IDf~l~SWlh~~lP~G~al~itsL~~~L~~stdaPhfl~ElIq~sPtslvl~LDl~PRkDLvl~pdYl~   99 (237)
                      |.++   +||+||||++|||||+||+|+++|||++++|||+++|+|||+|||||+||++++|+|||+||||||+|||||+
T Consensus        61 l~~~sg~~~s~id~~i~SWl~~~l~~G~al~I~nlv~yl~~~~D~Phfgidli~~g~~~ll~vLDl~PRkdLv~~~dYL~  140 (276)
T 3agc_A           61 LHIRSGDKSSPIDFVIGSWIHCKIPTGVSLNITSISGFLNSSTKAPNFVVELIQSSSKSLVLILDLPHRKDLVLNPDYLK  140 (276)
T ss_dssp             EEEEEBCTTCSEEEEEEEEEEEECTTSCEEEEEEEEEEECTTCCCCCEEEEEEESSSSEEEEEEECCCSSCTTTCHHHHH
T ss_pred             eeeccCCCCCCcceeehhhhcCcccCccceeheeeeeecCcccCCchhhHHHHhcCCCceEEEEecCCccccccCHHHHH
Confidence            5666   4679999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcccchhHHHHHhhhCCCcccccCccceeeeecCcceEEEEeecccccCCCcccchHHHHhhcchhhHHHHHHHHHhh
Q 026566          100 TFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQ  179 (237)
Q Consensus       100 ~yYE~t~ld~~Rq~lek~Pe~~pYvS~SLyvRs~~SPTAi~~~i~~~~~~~~g~~~~leeiv~~~v~p~A~evl~~WL~~  179 (237)
                      ||||+|++|++||+++++||++||+|||||+|+++||||+||+|+|    ++|  ++|||||+++|.|+|+++|++||++
T Consensus       141 rYye~~~l~~lr~~~~~l~d~~pYfS~sLf~R~~~Spta~~~~~~~----~~g--~~l~eiv~~~l~p~~~e~L~~wl~~  214 (276)
T 3agc_A          141 EYYQDTALDSHRQSLLKLPEVNPYVSPSLFVRSAVSPTASMLKIDA----EEE--DKLEEILRDHVSPAAKEVLEVWLER  214 (276)
T ss_dssp             HHTTSSSHHHHHHHHHTSTTEEECCCSCHHHHHHSCTTCEEEEEEC----SSH--HHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred             HHhcccccHHHHHHHHhCcccccccChhHHhhhccCchhheeeccc----ccc--chHHHHHHHhhHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999    654  9999999999999999999999999


Q ss_pred             hhcCCcc---cChhhHHHHHHhhhhhhhhceeeccCCCCCcccChhHHHHHHHHHHhHhcC
Q 026566          180 CACGGRH---VGESDKAYLEKRDGLIKNKTIEIDLGSSFPRLFGPQVASRVLGEIQKVFTA  237 (237)
Q Consensus       180 c~~~~~~---v~e~Er~~L~kRD~~Ir~k~iE~DL~~nlPRlFG~evadRvv~air~~f~~  237 (237)
                      |++++.+   |+|+||++|+|||++||+++||+||++|||||||||+|||+|++|||+|||
T Consensus       215 ~~~~~~~~~~~~e~e~~~l~~rd~~~r~~saE~Dpa~~l~r~FG~E~sdr~l~~~~~~~~~  275 (276)
T 3agc_A          215 CVKEEEEKIVVGEEERMELERRDKSFRRKSIEDDLDLQFPRMFGEEVSSRVVHAIKEAFGV  275 (276)
T ss_dssp             TTCSSSCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHCHHHHHHHHHHHHHHHTC
T ss_pred             hhccCCccCCCChhHHHHHHHHHHHHHhhhcccCchhchHhhhCHHHHHHHHHHHHhhhcc
Confidence            9887766   999999999999999999999999999999999999999999999999986

>2x9o_A 15,16- dihydrobiliverdin-ferredoxin oxidoreductas; phycobilin synthesis, cyanobacteria, oxidoreductase, phycoerythrobilin; HET: BLA; 1.55A {Synechococcus SP}

Probab=99.58  E-value=1.1e-15  Score=134.31  Aligned_cols=176  Identities=17%  Similarity=0.217  Sum_probs=139.0

Q ss_pred             cccCCCccceeeeccccccCCCCccccceeeheecccCCCCchhhhhhhh-cCCceEEEEeecCCccCCCCCchhHHHhh
Q 026566           24 MIMDACQIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQ-SSPSSLVLILDLSPRKDLVLHPDYLQTFY  102 (237)
Q Consensus        24 ~~~~gs~IDf~l~SWlh~~lP~G~al~itsL~~~L~~stdaPhfl~ElIq-~sPtslvl~LDl~PRkDLvl~pdYl~~yY  102 (237)
                      .++++++++ -+|+|+-.  + |.++.|.|..+|-+|+.|.|+|++-|+. ++...++.++||-|..+   +.+|.++||
T Consensus        50 ~~y~~~~fR-k~r~~~~~--~-g~~lqVLh~V~fP~~~ydlPiFG~Dlv~~~~~~~l~AilDlqP~~~---d~~y~~~Y~  122 (244)
T 2x9o_A           50 WLWDVPGFR-RWRVTRLD--A-GDSLQVFNSVAYPDYNYDHPLMGVDLLWFGARQKLVAVLDFQPLVQ---DKDYLDRYF  122 (244)
T ss_dssp             EEEECTTEE-EEEEEEEE--E-TTTEEEEEEEEEECTTCCCCEEEEEEEEEGGGTEEEEEEEEECSCC---CHHHHHHHC
T ss_pred             EEecCchHh-HHHHHHhc--c-CCCcEEEEEEeccCCCCCCCeehhheeccCCCceEEEEEEcCCCCC---hhhchHHHH
Confidence            356788888 77888776  4 7789999999999999999999999983 23545655999999843   469999999


Q ss_pred             cccchh-HHHHHhh---hCCC--cccccCcc-ceeeeecCcceEEEEeecccccCCCcccchHHHHhhcchhhHHHHHHH
Q 026566          103 ESTRLD-EYRQMLE---KVPE--VRPYFSSS-LYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGI  175 (237)
Q Consensus       103 E~t~ld-~~Rq~le---k~Pe--~~pYvS~S-LyvRs~~SPTAi~~~i~~~~~~~~g~~~~leeiv~~~v~p~A~evl~~  175 (237)
                      +....= .+...+.   .+|.  ..+|+|+. ||+|            ..       +     +.+.+.+-+..++-|++
T Consensus       123 ~~L~~l~~~~~~~~~~~~~~~~e~~~~FSp~~lf~R------------~~-------~-----~~~~~~~~~af~~yL~~  178 (244)
T 2x9o_A          123 SGLKELNQRFPDLNGEETMRSFDPNQYFSSWLLFCR------------GG-------A-----EQADLSLPKAFSAFLKA  178 (244)
T ss_dssp             HHHHHHHHHCTTC--CCCCSSSCTTSSCCTTCEEEE------------EC-------H-----HHHHHTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCccCCChhhhHhhcCCceEEEe------------CC-------c-----HHHHHHHHHHHHHHHHH
Confidence            965321 1112222   3444  67888888 8888            11       0     34456688999999999


Q ss_pred             HHhhhhcCCcccCh-hhHHHHHHhhhhhhhhceeeccCCCC-CcccChhHHHHHHHHH
Q 026566          176 WLNQCACGGRHVGE-SDKAYLEKRDGLIKNKTIEIDLGSSF-PRLFGPQVASRVLGEI  231 (237)
Q Consensus       176 WL~~c~~~~~~v~e-~Er~~L~kRD~~Ir~k~iE~DL~~nl-PRlFG~evadRvv~ai  231 (237)
                      |+++ ++.+.|+++ ++++.+.+++.-..+...|.|++..| -|+||+|-|||.|+.+
T Consensus       179 ~l~~-~~~a~p~~~~~~~~~i~~~Q~~Y~~~qaenDpar~vl~~~FG~ewae~yi~~~  235 (244)
T 2x9o_A          179 YWDL-HDNAKSIPSTIPPEEVKNLQDKYDIYSAERDPAHGLFTSHFGKDWSNRFLHEF  235 (244)
T ss_dssp             HHHH-HHHHTTSCCSSCHHHHHHHHHHHHHHHHHHCSCHHHHHHHHCHHHHHHHHHHT
T ss_pred             HHHH-HHhCCCCCCchhHHHHHHHHHHHHHHHHHhCCHHHHHHHHcCHHHHHHHHHHc
Confidence            9999 688888855 88999999999999999999999998 9999999999998753

>3i94_A Phycocyanobilin:ferredoxin oxidoreductase; alpha-beta-alpha sandwich, enzyme-substrate analog complex; HET: BL3; 1.04A {Synechocystis SP} PDB: 2dke_A 2d1e_A* 3i8u_X* 3i95_A* 3f0l_A* 3f0m_A* 4eod_A* 4eoe_A* 3f0j_A* 3f0k_A* 3nb8_A* 3nb9_A* 3ajg_A* 3ajh_A* 4eoc_A*

Probab=98.54  E-value=4.1e-08  Score=86.80  Aligned_cols=160  Identities=16%  Similarity=0.221  Sum_probs=117.7

Q ss_pred             CCccccceeeheecccCCCCchhhhhhhhcCCce-EEEEeecCCccCCCCCchhHHHhhcccchhHHH-HHhhhCCCccc
Q 026566           45 TGAALNITSLSAYLNSSTDAPNLLIELIQSSPSS-LVLILDLSPRKDLVLHPDYLQTFYESTRLDEYR-QMLEKVPEVRP  122 (237)
Q Consensus        45 ~G~al~itsL~~~L~~stdaPhfl~ElIq~sPts-lvl~LDl~PRkDLvl~pdYl~~yYE~t~ld~~R-q~lek~Pe~~p  122 (237)
                      .|.++.|.|..+|=++..|.|=|++-|+. +|.. ++.++|+-|=.+   +.+|.++|++...  ... ..+.+--+..|
T Consensus        80 ~G~~lqVLn~V~fP~~~yDLPiFG~Dlv~-~~~~~~lailDlqPl~~---d~~y~~~Y~~~l~--~l~~~~f~~~r~l~~  153 (248)
T 3i94_A           80 VGKGLDILHCVMFPEPLYGLPLFGCDIVA-GPGGVSAAIADLSPTQS---DRQLPAAYQKSLA--ELGQPEFEQQRELPP  153 (248)
T ss_dssp             ETTTEEEEEEEEEECGGGTCCEEEEEEEE-ETTEEEEEEEEEECCST---TSCCCHHHHHHHH--HTCCCCCSSBCCCCG
T ss_pred             cCCCcEEEEEEEccCCCCCCCccceeEec-cCCceEEEEEECCCCCC---cccchHHHHHHHH--HhchhhhcCcccCCc
Confidence            37799999999999999999999999998 5545 368999999544   6677778776532  111 01111111122


Q ss_pred             ccCccceeeeecCcceEEEEeecccccCCCcccchHHHHhhcchhhHHHHHHHHHhhhhcCCcccChhhHHHHHHhhhhh
Q 026566          123 YFSSSLYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRHVGESDKAYLEKRDGLI  202 (237)
Q Consensus       123 YvS~SLyvRs~~SPTAi~~~i~~~~~~~~g~~~~leeiv~~~v~p~A~evl~~WL~~c~~~~~~v~e~Er~~L~kRD~~I  202 (237)
                      +-       ..+||-.++++ ..    +   ++ -+    +.+....++-+++|++. +..+.+++++++....++..--
T Consensus       154 wg-------~iFSp~~lf~R-p~----~---~e-e~----~~f~~~~~~Yl~~~~~~-~~~a~p~~~~~~~~~~~~Q~~Y  212 (248)
T 3i94_A          154 WG-------EIFSEYCLFIR-PS----N---VT-EE----ERFVQRVVDFLQIHCHQ-SIVAEPLSEAQTLEHRQGQIHY  212 (248)
T ss_dssp             GG-------GGSCTTCEEEC-CC----S---HH-HH----HHHHHHHHHHHHHHHHH-HHHCCCCCHHHHHHHHHHHHHH
T ss_pred             hh-------hhCCCceEEec-CC----C---HH-HH----HHHHHHHHHHHHHHHHH-HHhCCCCCchhHHHHHHHHHHH
Confidence            21       25788888877 32    1   11 11    33677789999999999 6788889888887777777777


Q ss_pred             hhhceeeccCCCC-CcccChhHHHHHHHHH
Q 026566          203 KNKTIEIDLGSSF-PRLFGPQVASRVLGEI  231 (237)
Q Consensus       203 r~k~iE~DL~~nl-PRlFG~evadRvv~ai  231 (237)
                      -+...|.|++.-+ -|.||+|-|||.|+.+
T Consensus       213 ~~~qaenDpar~vL~~~FG~eWae~yi~~~  242 (248)
T 3i94_A          213 CQQQQKNDKTRRVLEKAFGEAWAERYMSQV  242 (248)
T ss_dssp             HHHHTTCHHHHHHHHHHHCHHHHHHHHHHT
T ss_pred             HHHHHHhCcHHHHHHHHhChHHHHHHHHHh
Confidence            8899999999998 9999999999998753

>2vcl_A Cyanobacterial phycoerythrobilin; cyanophages, biliverdin IXA, oxidoreductase, phycobilin reductase, phycobilin synthesis; 1.55A {Prochlorococcus phage p-ssm2} PDB: 2vck_A 2vgr_A* 2x9i_A* 2x9j_A*

Probab=97.94  E-value=9.8e-07  Score=77.86  Aligned_cols=156  Identities=13%  Similarity=0.138  Sum_probs=109.8

Q ss_pred             Cccceeeeccccc---------cCCCCccccceeeheecccCCCCchhhhhhhhcCCceEEE-EeecCCccCCCCCchhH
Q 026566           29 CQIDFILGSWVHS---------ELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVL-ILDLSPRKDLVLHPDYL   98 (237)
Q Consensus        29 s~IDf~l~SWlh~---------~lP~G~al~itsL~~~L~~stdaPhfl~ElIq~sPtslvl-~LDl~PRkDLvl~pdYl   98 (237)
                      ....-.+.+|.++         ++=.|.+++|.|..+|=+|+.|.|=|++-|+. .|..-.+ ++|+-|=.         
T Consensus        55 ~~~~~~i~n~~y~s~~fRK~r~~~~~g~~lqVLn~V~fP~~~yDLPiFG~Dlv~-~~~~~~lailDlqPl~---------  124 (233)
T 2vcl_A           55 DGGDAKLTANIRTGEHFLKAREAHIVDPNSDIYNTILYPKTGADLPCFGMDLMK-FSDKKVIIVFDFQHPR---------  124 (233)
T ss_dssp             --CCEEEEEEEEEETTEEEEEEEEEEETTEEEEEEEEEECBSSCCCEEEEEEEE-EETTEEEEEEEEECSS---------
T ss_pred             CCCceEEEehhhcCcHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCccceeeec-cCCceEEEEEeCCccH---------
Confidence            3456677788643         22247899999999999999999999999987 5555554 99998755         


Q ss_pred             HHhhcccchhHHHHHhhhCC---CcccccCccceeeeecCcceEEEEeecccccCCCcccchHHHHhhcchhhHHHHHHH
Q 026566           99 QTFYESTRLDEYRQMLEKVP---EVRPYFSSSLYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGI  175 (237)
Q Consensus        99 ~~yYE~t~ld~~Rq~lek~P---e~~pYvS~SLyvRs~~SPTAi~~~i~~~~~~~~g~~~~leeiv~~~v~p~A~evl~~  175 (237)
                      ++|++...-  . -.-+++|   +..+|+|+-||+|    |        +    +   .    +.+...+ +..++-|+.
T Consensus       125 ~~Y~~~L~~--L-p~~~~lp~fye~~~~FSp~lf~R----p--------~----~---~----~e~~~~l-~af~~YL~~  177 (233)
T 2vcl_A          125 EKYLFSVDG--L-PEDDGKYRFFEMGNHFSKNIFVR----Y--------C----K---P----DEVDQYL-DTFKLYLTK  177 (233)
T ss_dssp             TTCCCCCTT--S-CCCCSSSCCSCTTSSCCTTCEEE----E--------E----C---G----GGGGGGH-HHHHHHHHH
T ss_pred             HHHHHHHhc--C-CCCCCCCCccchhhccCCCeEEe----e--------C----C---H----HHHHHHH-HHHHHHHHH
Confidence            667764321  1 1146778   8899999999998    1        1    1   1    2234457 888999999


Q ss_pred             HHhhhhcCCccc---ChhhHHHHHHhhhhhhhhceeeccCCCC-CcccChhHHHHHHHH
Q 026566          176 WLNQCACGGRHV---GESDKAYLEKRDGLIKNKTIEIDLGSSF-PRLFGPQVASRVLGE  230 (237)
Q Consensus       176 WL~~c~~~~~~v---~e~Er~~L~kRD~~Ir~k~iE~DL~~nl-PRlFG~evadRvv~a  230 (237)
                      |++. +..+.++   -++.+.+...        ..|.|++.-+ -|.||+|-|||.++.
T Consensus       178 y~~~-~~~a~p~~~i~~~Q~~Y~~~--------q~enDpar~vL~~~FG~eWae~yi~~  227 (233)
T 2vcl_A          178 YKEM-IDNNKPVGEDTTVYSDFDTY--------MTELDPVRGYMKNKFGEGRSEAFVND  227 (233)
T ss_dssp             HHHH-HHHHCCCBCCGGGGHHHHHH--------HHHC--CCHHHHHHHCHHHHHHHHHH
T ss_pred             HHHH-HHhCCCchHHHHHHHHHHHH--------HHHhCcHHHHHHHHcCHHHHHHHHHH
Confidence            9987 4555554   3444555443        4678999887 999999999999875

>2g18_A Phycocyanobilin:ferredoxin oxidoreductase; alpha-beta-alpha sandwich; 2.50A {Anabaena SP}

Probab=97.78  E-value=3.4e-06  Score=74.70  Aligned_cols=159  Identities=15%  Similarity=0.151  Sum_probs=105.3

Q ss_pred             CccccceeeheecccCCCCchhhhhhhhcCCceEEEEeecCCccCCCCCchhHHHhhcccchhHHH-HHhhhCCCccccc
Q 026566           46 GAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYR-QMLEKVPEVRPYF  124 (237)
Q Consensus        46 G~al~itsL~~~L~~stdaPhfl~ElIq~sPtslvl~LDl~PRkDLvl~pdYl~~yYE~t~ld~~R-q~lek~Pe~~pYv  124 (237)
                      |.+++|.|..+|=+++.|.|=|++.++.+...-..+++|+-|=.+   +.+|.++|++..  ...+ ..+.+.-+..+|-
T Consensus        86 G~~lqVLn~V~fP~~~yDLPiFG~Dlv~~~~~~~l~ilDlqPl~~---d~~~~~~Y~~~L--~~L~~~~f~~~r~lp~wg  160 (253)
T 2g18_A           86 GNMLDILHCVMFPRPEYDLPMFGCDLVGGRGQISAAIADLSPVHL---DRTLPESYNSAL--TSLNTLNFSQPRELPEWG  160 (253)
T ss_dssp             TTTEEEEEEEEEECTTSCCCEEEEEEEEETTEEEEEEEEEECSST---TCCCCHHHHHHH--HHSCCCCCSSBCCCCTTG
T ss_pred             CCCcEEEEEEEcCCCCCCCCeeeeeeeccCCceEEEEEECCCCCC---cccchHHHHHHH--HhhccccccccccCCchh
Confidence            679999999999999999999999999744432336999977432   335555555432  1110 1111111111222


Q ss_pred             CccceeeeecCcceEEEEeecccccCCCcccchHHHHhhcchhhHHHHHHHHHhhhhcCCcccChhhHHHHHHhhhhhhh
Q 026566          125 SSSLYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRHVGESDKAYLEKRDGLIKN  204 (237)
Q Consensus       125 S~SLyvRs~~SPTAi~~~i~~~~~~~~g~~~~leeiv~~~v~p~A~evl~~WL~~c~~~~~~v~e~Er~~L~kRD~~Ir~  204 (237)
                             ..+||-.+..+...       .++ . +.    .-...++-|++|++. +..+.+++.++.+.+.+.-.---+
T Consensus       161 -------~iFSp~~lf~Rp~~-------~ee-~-~a----F~~~~~~yL~~~~~~-~~~a~~~~~~~~~~i~~~Q~~Y~~  219 (253)
T 2g18_A          161 -------NIFSDFCIFVRPSS-------PEE-E-AM----FLGRVREFLQVHCQG-AIAASPVSAEQKQQILAGQHNYCS  219 (253)
T ss_dssp             -------GGSCTTCEEECCCS-------HHH-H-HH----HHHHHHHHHHHHHHH-HHHCCCCCHHHHHHHHHHHHHHHH
T ss_pred             -------hhcCcceEEeccCc-------hHH-H-HH----HHHHHHHHHHHHHHH-HHhCCCCCcccHHHHHHHHHHHHH
Confidence                   25788777777654       111 0 11    222355666666665 577788887777777777777778


Q ss_pred             hceeeccCCCC-CcccChhHHHHHHHH
Q 026566          205 KTIEIDLGSSF-PRLFGPQVASRVLGE  230 (237)
Q Consensus       205 k~iE~DL~~nl-PRlFG~evadRvv~a  230 (237)
                      ...|.|++--+ -|.||+|-|||.++.
T Consensus       220 ~qaenDpar~vL~~~FG~ewae~yi~~  246 (253)
T 2g18_A          220 KQQQNDKTRRVLEKAFGVDWAENYMTT  246 (253)
T ss_dssp             HHHHHCTHHHHHHHHHCHHHHHHHHHH
T ss_pred             HHHHhCcHHHHHHHHcCHHHHHHHHHh
Confidence            88999999887 999999999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00