Citrus Sinensis ID: 026604

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230------
Protein Sequence
MGLIGHLFPPPDFSLIKSSTIFTKKSSLCHGHHPEPAASTSQALYKKPIILSHLLSLALTATFNSPLPCLAVPSVNSQFPLLSPTTPFSQSKNLQLGLQEDGKIRPCPSTNPGCVSTNPKSSSFAFPLRIPENSTENAIQKLQEAILKTQKNAKIGVVEDTPFGQYLQAEVDGGFGRDVLEFLVKGDVVAYRSVAKKVTYVYPFTTALGDSKGQEERMKQIIAELGWYAPSFDSME
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccHHHHHcccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccHHHHHHHHHHHHHHHccccEEEEEEEcccccEEEEEEccccccEEEEEEEcccEEEEEEccccccccccccccccccHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cccEccccccccccEEccccEEEccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccHcccccccccccccEccccccccccEEccccccccccccEcccccHHHHHHHHHHHHHHHccccEEEEEEEccccEEEEEEEcccccccEEEEEEcccEEEEEEEccEEEEEEEcccccccccHHHHHHHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
mglighlfpppdfsliksstiftkksslchghhpepaastsqalykkpIILSHLLSLALtatfnsplpclavpsvnsqfpllspttpfsqsknlqlglqedgkirpcpstnpgcvstnpksssfafplripenstENAIQKLQEAILKTQKnakigvvedtpfgqyLQAEVDGGFGRDVLEFLVKGDVVAYRSVAKKVTYVYpfttalgdskgQEERMKQIIAELgwyapsfdsme
Flexible Loop (DISEMBL)
mglighlfpppdfSLIKSSTIFTKKSSLCHGHHPEPAASTSQALYKKPIILSHLLSLALTATFNSPLPCLAVPSVNSQFPLLSPTTPFSQSKNLQLGLQEDGKIRPCPSTNPGCVSTNPKSSSFAFPLRIPENSTENAIQKLQEAILKTQKNAKIGVVEDTPFGQYLQAEVDGGFGRDVLEFLVKGDVVAYRsvakkvtyvypfttalgdskgqeERMKQIIAElgwyapsfdsme
Low Complexity Region (SEG)
MGLIGHLFPPPDFsliksstiftkksslCHGHHPEPAASTSQALYKKPiilshllslaltatFNSPLPCLAVPSVNSQFPLLSPTTPFSQSKNLQLGLQEDGKIRPCPSTNPGCVSTNPKSSSFAFPLRIPENSTENAIQKLQEAILKTQKNAKIGVVEDTPFGQYLQAEVDGGFGRDVLEFLVKGDVVAYRSVAKKVTYVYPFTTALGDSKGQEERMKQIIAELGWYAPSFDSME
Disordered region (IsUnstruct)
******LF***DFSLIKSSTIFT*******************ALYKKPIILSHLLSLALTATFNSPLPCLAVPSVNSQFP*************************************************************LQEAILKTQKNAKIGVVEDTPFGQYLQAEVDGGFGRDVLEFLVKGDVVAYRSVAKKVTYVYPFTTALGD*******MKQIIAELGWYA*******
Disordered Region (DISOPRED)
*******FPPPDFSLI******************************KPIILSHLLSLALTATFNSPLPCLAVPSVNSQFPLLSPTT*F*Q*****L*LQEDGKIRPCPSTNPGCVSTNPKSSSFAFPLRIPENSTENAIQKLQEAILKTQKNAKIGVVEDTPFGQYLQAEVDGGFGRDVLEFLVKGDVVAYRSVAKKVTYVYPFTTAL****G*EERMKQIIAELGWYAPSFDS**
Disordered Region (DISEMBL)
MGLIGHLFPPPDFSLIKSSTIFTKKSSLCHGHHPEPAASTSQALYKKPIILSHLLSLALTATFNSPLPCLAVPSVNSQFPLLSPTTPFSQSKNLQLGLQEDGKIRPCPSTNPGCVSTNPKSSSFAFPLRIPENSTENAIQKLQEAILKTQKNAKIGVVEDTPFGQYLQAEVDGGFGRDVLEFLVKGDVVAYRSVAKKVTYVYPFTTALGDSKGQEERMKQIIAELGWYAPSFDSME
Disordered Region (DISPRO)
*GLIGHLFPPPDFSLIKSSTIFTKKSSLCHGHHPEPAASTSQALYKKPIILSHLLSLALTATFNSPLPCLAVPSVNSQFPLLSPTTPFSQSKNLQLGLQEDGKIRPCPSTNPGCVSTNPKSSSFAFPLRIPENSTENAIQKLQEAILKTQKNAKIGVVEDTPFGQYLQAEVDGGFGRDVLEFLVKGDVVAYRSVAKKVTYVYPFTTALGDSKGQEERMKQIIAELGWYAPS*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGLIGHLFPPPDFSLIKSSTIFTKKSSLCHGHHPEPAASTSQALYKKPIILSHLLSLALTATFNSPLPCLAVPSVNSQFPLLSPTTPFSQSKNLQLGLQEDGKIRPCPSTNPGCVSTNPKSSSFAFPLRIPxxxxxxxxxxxxxxxxxxxxxAKIGVVEDTPFGQYLQAEVDGGFGRDVLEFLVKGDVVAYRSVAKKVTYVYPFTTALGDSKGQEERMKQIIAELGWYAPSFDSME
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	236	2.2.26 [Sep-21-2011]
Q9SW33	225	Thylakoid lumenal 17.9 kD	yes	no	0.775	0.813	0.654	1e-65

>sp|Q9SW33|TL1Y_ARATH Thylakoid lumenal 17.9 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=At4g24930 PE=1 SV=1

 Score =  249 bits (636), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 123/188 (65%), Positives = 153/188 (81%), Gaps = 5/188 (2%)

Query: 50  ILSHLLSLALTATFNSPLPCLAVPSVNSQFPLLSPTTPFSQSKNLQLGLQEDGKIRPCPS 109
           +L  L+S AL  +  S  P LA+PS++S  PL   TTPF+QSK +Q GL  +GKIRPCPS
Sbjct: 42  LLPKLISFALAISLTSFSPALAIPSLSSSQPL---TTPFTQSKFVQTGLL-NGKIRPCPS 97

Query: 110 TNPGCVSTNPKSSSFAFPLRIPENSTENAIQKLQEAILKTQKNAKIGVVEDTPFGQYLQA 169
           TNPGCVSTNP SSSF+FPL IPE  T++ I+KL+EAI+ TQKN K  V+EDTP+G+Y++A
Sbjct: 98  TNPGCVSTNPTSSSFSFPLTIPETDTQDPIEKLKEAIMSTQKNPKFVVLEDTPYGRYVEA 157

Query: 170 EVD-GGFGRDVLEFLVKGDVVAYRSVAKKVTYVYPFTTALGDSKGQEERMKQIIAELGWY 228
           EV+ GGF RDV+EFLVK DVVAYR +A KVT+VYPFTTA GDSKGQEER+K++I +LGWY
Sbjct: 158 EVEGGGFSRDVMEFLVKQDVVAYRCMATKVTFVYPFTTAFGDSKGQEERLKKLIDQLGWY 217

Query: 229 APSFDSME 236
           AP+F+SME
Sbjct: 218 APTFESME 225

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	236
224136191	216	predicted protein [Populus trichocarpa]	0.915	1.0	0.703	2e-88
225456361	226	PREDICTED: thylakoid lumenal 17.9 kDa pr	0.889	0.929	0.710	1e-79
255540209	229	Thylakoid lumenal 17.9 kDa protein, chlo	0.932	0.960	0.7	2e-79
356516541	223	PREDICTED: thylakoid lumenal 17.9 kDa pr	0.940	0.995	0.661	2e-77
356508819	221	PREDICTED: thylakoid lumenal 17.9 kDa pr	0.788	0.841	0.780	4e-77
147789865	786	hypothetical protein VITISV_001274 [Viti	0.792	0.237	0.75	1e-74
449454820	232	PREDICTED: thylakoid lumenal 17.9 kDa pr	0.847	0.862	0.721	3e-73
388508666	214	unknown [Lotus japonicus]	0.783	0.864	0.747	6e-73
357465039	216	Thylakoid lumenal 17.9 kDa protein [Medi	0.788	0.861	0.723	1e-69
297799502	226	hypothetical protein ARALYDRAFT_914093 [	0.762	0.796	0.675	1e-64

>gi|224136191|ref|XP_002322266.1| predicted protein [Populus trichocarpa] gi|222869262|gb|EEF06393.1| predicted protein [Populus trichocarpa]

 Score =  330 bits (847), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 166/236 (70%), Positives = 188/236 (79%), Gaps = 20/236 (8%)

Query: 1   MGLIGHLFPPPDFSLIKSSTIFTKKSSLCHGHHPEPAASTSQALYKKPIILSHLLSLALT 60
           M LIGH+ PP                   H    +    TSQ +  KPI+ ++L SLALT
Sbjct: 1   MSLIGHVLPP-------------------HLSTSKITNFTSQNVTLKPILFTNLFSLALT 41

Query: 61  ATFNSPLPCLAVPSVNSQFPLLSPTTPFSQSKNLQLGLQEDGKIRPCPSTNPGCVSTNPK 120
            T NSPLP LA+PS+NSQ PLLSPTTPFSQSKNLQ+GL E+GKIRPCPSTNPGCVSTNP+
Sbjct: 42  VTLNSPLPSLAIPSLNSQPPLLSPTTPFSQSKNLQIGL-ENGKIRPCPSTNPGCVSTNPQ 100

Query: 121 SSSFAFPLRIPENSTENAIQKLQEAILKTQKNAKIGVVEDTPFGQYLQAEVDGGFGRDVL 180
           SSSF+FP RIPEN TENAIQKL+EAILKTQ+NAKI V+EDTP G+YLQAEVDGGF  DVL
Sbjct: 101 SSSFSFPWRIPENDTENAIQKLEEAILKTQRNAKIQVIEDTPNGKYLQAEVDGGFDPDVL 160

Query: 181 EFLVKGDVVAYRSVAKKVTYVYPFTTALGDSKGQEERMKQIIAELGWYAPSFDSME 236
           EFLV+GDVVAYR++A KVTYVYPFTTA GDSKGQEERMK+I+ ELGWYAPSFDSM+
Sbjct: 161 EFLVRGDVVAYRTMATKVTYVYPFTTAFGDSKGQEERMKKILNELGWYAPSFDSMD 216

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456361|ref|XP_002280221.1| PREDICTED: thylakoid lumenal 17.9 kDa protein, chloroplastic [Vitis vinifera] gi|297734440|emb|CBI15687.3| unnamed protein product [Vitis vinifera]

 Score =  301 bits (772), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 150/211 (71%), Positives = 172/211 (81%), Gaps = 1/211 (0%)

Query: 26  SSLCHGHHPEPAASTSQALYKKPIILSHLLSLALTATFNSPLPCLAVPSVNSQFPLLSPT 85
           S++    H      TS+    +P +L +LLS ALT +  S    LA+PS+NSQ  LL PT
Sbjct: 17  STIKASFHLRIPTETSRNSNTRPFLLPNLLSFALTVSLASSPLSLALPSINSQSSLLPPT 76

Query: 86  TPFSQSKNLQLGLQEDGKIRPCPSTNPGCVSTNPKSSSFAFPLRIPENSTENAIQKLQEA 145
           TPFSQSKNLQ+GL E+GKIRPCPS NPGCVSTNPKSSSFAFPL IPE  ++NA+QKLQE 
Sbjct: 77  TPFSQSKNLQVGL-ENGKIRPCPSINPGCVSTNPKSSSFAFPLTIPEKYSDNAVQKLQET 135

Query: 146 ILKTQKNAKIGVVEDTPFGQYLQAEVDGGFGRDVLEFLVKGDVVAYRSVAKKVTYVYPFT 205
           ILKTQ+NAKI VVEDTP GQYL+AEVDGGFGRD++EFLVKGDVVAYR++A KVTYVYPFT
Sbjct: 136 ILKTQRNAKIQVVEDTPDGQYLRAEVDGGFGRDIMEFLVKGDVVAYRTMATKVTYVYPFT 195

Query: 206 TALGDSKGQEERMKQIIAELGWYAPSFDSME 236
           TALGDSKGQEERMK+II  LGWYAPS DSM+
Sbjct: 196 TALGDSKGQEERMKKIIDLLGWYAPSLDSMD 226

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540209|ref|XP_002511169.1| Thylakoid lumenal 17.9 kDa protein, chloroplast precursor, putative [Ricinus communis] gi|223550284|gb|EEF51771.1| Thylakoid lumenal 17.9 kDa protein, chloroplast precursor, putative [Ricinus communis]

 Score =  301 bits (770), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 161/230 (70%), Positives = 180/230 (78%), Gaps = 10/230 (4%)

Query: 1   MGLIGHLFPPPDFSLIKSSTIFTKKSSLCHGHHPEPAASTSQALYKKPIILSHLLSLALT 60
           M LIGH+  P     +  ST  +K SS    ++P     +   L  KPI+ ++LLSLALT
Sbjct: 1   MSLIGHVLLP-----LHPST--SKNSSQKASNYPHFPKFSLPILAPKPILFTNLLSLALT 53

Query: 61  ATFNSPLPCLAVPSVNS--QFPLLSPTTPFSQSKNLQLGLQEDGKIRPCPSTNPGCVSTN 118
            T +SPLP LA+PS NS    PLL PTTPFSQSKNL  GL EDGKIRPCPSTNP C+STN
Sbjct: 54  VTLSSPLPSLAIPSPNSLSASPLLPPTTPFSQSKNLATGL-EDGKIRPCPSTNPSCISTN 112

Query: 119 PKSSSFAFPLRIPENSTENAIQKLQEAILKTQKNAKIGVVEDTPFGQYLQAEVDGGFGRD 178
           PK+S FAFPL IP +STENAIQKLQEAILKTQ NAKI V+E+TP GQYLQAEVDGGFGRD
Sbjct: 113 PKTSQFAFPLTIPGDSTENAIQKLQEAILKTQGNAKIQVIENTPNGQYLQAEVDGGFGRD 172

Query: 179 VLEFLVKGDVVAYRSVAKKVTYVYPFTTALGDSKGQEERMKQIIAELGWY 228
           VLEFLVKGDVVAYRS+A KVTYVYPFTTA GDSKGQEERMK+II +LGWY
Sbjct: 173 VLEFLVKGDVVAYRSMATKVTYVYPFTTAFGDSKGQEERMKKIIDQLGWY 222

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516541|ref|XP_003526952.1| PREDICTED: thylakoid lumenal 17.9 kDa protein, chloroplastic-like [Glycine max]

 Score =  294 bits (753), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 156/236 (66%), Positives = 175/236 (74%), Gaps = 14/236 (5%)

Query: 1   MGLIGHLFPPPDFSLIKSSTIFTKKSSLCHGHHPEPAASTSQALYKKPIILSHLLSLALT 60
           M L+  L PP     + SS+       L   H P         L     +L +LLSLAL 
Sbjct: 1   MSLMSSLLPP-----LASSSYINTAPKLKTTHTPN--------LVLGQRVLPNLLSLALA 47

Query: 61  ATFNSPLPCLAVPSVNSQFPLLSPTTPFSQSKNLQLGLQEDGKIRPCPSTNPGCVSTNPK 120
            T  SPLP  A+PS+NSQ P +S TTPFSQSKNL+LGL E+GKIRPCPS NPGC+STNPK
Sbjct: 48  VTLASPLPSHAIPSLNSQPPPISLTTPFSQSKNLELGL-ENGKIRPCPSINPGCISTNPK 106

Query: 121 SSSFAFPLRIPENSTENAIQKLQEAILKTQKNAKIGVVEDTPFGQYLQAEVDGGFGRDVL 180
           SSSF+FP  IP NS+++AIQKL+EAILKTQKN K   VEDTP GQYLQAEVDGGFGRD+L
Sbjct: 107 SSSFSFPWLIPSNSSDDAIQKLREAILKTQKNVKFQPVEDTPDGQYLQAEVDGGFGRDIL 166

Query: 181 EFLVKGDVVAYRSVAKKVTYVYPFTTALGDSKGQEERMKQIIAELGWYAPSFDSME 236
           EFLVKGDVVAYR VA KVTYVYPFTTA GDSKGQE R+KQI  +LGWYAPSFDSME
Sbjct: 167 EFLVKGDVVAYRCVAMKVTYVYPFTTAFGDSKGQEARLKQINDQLGWYAPSFDSME 222

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508819|ref|XP_003523151.1| PREDICTED: thylakoid lumenal 17.9 kDa protein, chloroplastic-like [Glycine max]

 Score =  293 bits (750), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 146/187 (78%), Positives = 160/187 (85%), Gaps = 1/187 (0%)

Query: 50  ILSHLLSLALTATFNSPLPCLAVPSVNSQFPLLSPTTPFSQSKNLQLGLQEDGKIRPCPS 109
           +L +LLSLAL  T  SPLP  A+PS+NSQ P +S TTPFSQSKNL+LGL E+GKIRPCPS
Sbjct: 35  VLPNLLSLALAVTLASPLPSYAIPSLNSQSPPISFTTPFSQSKNLELGL-ENGKIRPCPS 93

Query: 110 TNPGCVSTNPKSSSFAFPLRIPENSTENAIQKLQEAILKTQKNAKIGVVEDTPFGQYLQA 169
            NPGC+STNPKSSSFAFP  IP NS ++AIQKL+EAILKTQKN K   VED+P GQYLQA
Sbjct: 94  INPGCISTNPKSSSFAFPWLIPSNSLDDAIQKLREAILKTQKNVKFQPVEDSPDGQYLQA 153

Query: 170 EVDGGFGRDVLEFLVKGDVVAYRSVAKKVTYVYPFTTALGDSKGQEERMKQIIAELGWYA 229
           EVDGGFGRDV+EFLVKGDVVAYR VA KVTYVYPFTTALGDSKGQE R+KQI   LGWYA
Sbjct: 154 EVDGGFGRDVIEFLVKGDVVAYRCVAMKVTYVYPFTTALGDSKGQEARLKQINDHLGWYA 213

Query: 230 PSFDSME 236
           PSFDSME
Sbjct: 214 PSFDSME 220

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147789865|emb|CAN73868.1| hypothetical protein VITISV_001274 [Vitis vinifera]

 Score =  285 bits (729), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 141/188 (75%), Positives = 160/188 (85%), Gaps = 1/188 (0%)

Query: 40  TSQALYKKPIILSHLLSLALTATFNSPLPCLAVPSVNSQFPLLSPTTPFSQSKNLQLGLQ 99
           TS+    +P +L +LLS ALT +  S    LA+PS+NSQ  LL PTTPFSQSKNLQ+GL 
Sbjct: 31  TSRNSNTRPFLLPNLLSFALTVSLASSPLSLALPSINSQSSLLPPTTPFSQSKNLQVGL- 89

Query: 100 EDGKIRPCPSTNPGCVSTNPKSSSFAFPLRIPENSTENAIQKLQEAILKTQKNAKIGVVE 159
           E+GKIRPCPS NPGCVSTNPKSSSFAFPL IPE  ++NA+QKLQE ILKTQ+NAKI VVE
Sbjct: 90  ENGKIRPCPSINPGCVSTNPKSSSFAFPLTIPEKYSDNAVQKLQETILKTQRNAKIQVVE 149

Query: 160 DTPFGQYLQAEVDGGFGRDVLEFLVKGDVVAYRSVAKKVTYVYPFTTALGDSKGQEERMK 219
           DTP GQYL+AEVDGGFGRD++EFLVKGDVVAYR++A KVTYVYPFTTALGDSKGQEERMK
Sbjct: 150 DTPDGQYLRAEVDGGFGRDIMEFLVKGDVVAYRTMATKVTYVYPFTTALGDSKGQEERMK 209

Query: 220 QIIAELGW 227
           +II  LGW
Sbjct: 210 KIIDLLGW 217

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454820|ref|XP_004145152.1| PREDICTED: thylakoid lumenal 17.9 kDa protein, chloroplastic-like [Cucumis sativus] gi|449474267|ref|XP_004154123.1| PREDICTED: thylakoid lumenal 17.9 kDa protein, chloroplastic-like [Cucumis sativus] gi|449503674|ref|XP_004162120.1| PREDICTED: thylakoid lumenal 17.9 kDa protein, chloroplastic-like [Cucumis sativus]

 Score =  280 bits (717), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 145/201 (72%), Positives = 167/201 (83%), Gaps = 1/201 (0%)

Query: 36  PAASTSQALYKKPIILSHLLSLALTATFNSPLPCLAVPSVNSQFPLLSPTTPFSQSKNLQ 95
           P+ ST Q    KPI LSHLLS AL+ T +SP P +A+PS+NS    LSPTTPFSQSKNL 
Sbjct: 32  PSMSTLQNANHKPIFLSHLLSFALSITLSSPFPSIAIPSLNSLSSPLSPTTPFSQSKNLP 91

Query: 96  LGLQEDGKIRPCPSTNPGCVSTNPKSSSFAFPLRIPENSTENAIQKLQEAILKTQKNAKI 155
            GL E+GKI PCPS NP CVSTNPKSSSFAFPL IP+N + N IQKLQEAIL+TQ+N KI
Sbjct: 92  TGL-ENGKIMPCPSANPSCVSTNPKSSSFAFPLNIPDNFSGNPIQKLQEAILETQRNPKI 150

Query: 156 GVVEDTPFGQYLQAEVDGGFGRDVLEFLVKGDVVAYRSVAKKVTYVYPFTTALGDSKGQE 215
            VVEDTP+GQYL+AEVDG FGRDV+EFLV+GDV AYR +A KVTYVYPFTTALGDSKGQE
Sbjct: 151 QVVEDTPYGQYLEAEVDGNFGRDVIEFLVRGDVAAYRIMATKVTYVYPFTTALGDSKGQE 210

Query: 216 ERMKQIIAELGWYAPSFDSME 236
           ERM++II +L WY+P+FDSM+
Sbjct: 211 ERMRKIIDQLHWYSPTFDSMD 231

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388508666|gb|AFK42399.1| unknown [Lotus japonicus]

 Score =  279 bits (714), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 139/186 (74%), Positives = 156/186 (83%), Gaps = 1/186 (0%)

Query: 51  LSHLLSLALTATFNSPLPCLAVPSVNSQFPLLSPTTPFSQSKNLQLGLQEDGKIRPCPST 110
           L +LLSLAL  T  SPLP  A+PS+NSQ P  S TTPFSQ+KNL++GL E+GKIR CPS 
Sbjct: 30  LPNLLSLALAVTLTSPLPSSAIPSLNSQPPSTSLTTPFSQAKNLKVGL-ENGKIRTCPSI 88

Query: 111 NPGCVSTNPKSSSFAFPLRIPENSTENAIQKLQEAILKTQKNAKIGVVEDTPFGQYLQAE 170
           NPGC+S+NPKSSSFAFP  IPENS +N IQKL+EAILKTQKN K  +VEDTP GQY+QAE
Sbjct: 89  NPGCISSNPKSSSFAFPWLIPENSLDNPIQKLREAILKTQKNVKFLLVEDTPDGQYMQAE 148

Query: 171 VDGGFGRDVLEFLVKGDVVAYRSVAKKVTYVYPFTTALGDSKGQEERMKQIIAELGWYAP 230
           VD GF RDVLEFLVKG+VVAYR +A KVTYVYPFTTA GDSKGQE R+KQI  +LGWYAP
Sbjct: 149 VDAGFDRDVLEFLVKGEVVAYRCMATKVTYVYPFTTAFGDSKGQEARLKQINDQLGWYAP 208

Query: 231 SFDSME 236
           SFDSME
Sbjct: 209 SFDSME 214

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357465039|ref|XP_003602801.1| Thylakoid lumenal 17.9 kDa protein [Medicago truncatula] gi|355491849|gb|AES73052.1| Thylakoid lumenal 17.9 kDa protein [Medicago truncatula]

 Score =  268 bits (685), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 136/188 (72%), Positives = 154/188 (81%), Gaps = 2/188 (1%)

Query: 50  ILSHLLSLALTATFNSPLPCLAVPSVNSQFPLLSPTTP-FSQSKNLQLGLQEDGKIRPCP 108
            L +L SLA+  T  SPLP  A+PS+NSQ P  + +T  FSQSKNLQLGL E+GKIRPCP
Sbjct: 30  FLPNLFSLAIAVTLTSPLPSHAIPSLNSQPPPTTLSTTPFSQSKNLQLGL-ENGKIRPCP 88

Query: 109 STNPGCVSTNPKSSSFAFPLRIPENSTENAIQKLQEAILKTQKNAKIGVVEDTPFGQYLQ 168
           S NPGC+STNPKSSSF FP  +PENS +NAIQ+L+EAIL+TQKN K   VEDTP GQYLQ
Sbjct: 89  SINPGCISTNPKSSSFDFPWTVPENSVDNAIQRLREAILETQKNVKFQPVEDTPDGQYLQ 148

Query: 169 AEVDGGFGRDVLEFLVKGDVVAYRSVAKKVTYVYPFTTALGDSKGQEERMKQIIAELGWY 228
           AEVDG F RDVLEFLVKGDVVA+R +A KVTY+YPFTTA GDSKGQE R+KQI  +LGWY
Sbjct: 149 AEVDGKFDRDVLEFLVKGDVVAFRCMAAKVTYIYPFTTAFGDSKGQEARLKQINDQLGWY 208

Query: 229 APSFDSME 236
           APSFDSME
Sbjct: 209 APSFDSME 216

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297799502|ref|XP_002867635.1| hypothetical protein ARALYDRAFT_914093 [Arabidopsis lyrata subsp. lyrata] gi|297313471|gb|EFH43894.1| hypothetical protein ARALYDRAFT_914093 [Arabidopsis lyrata subsp. lyrata]

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 125/185 (67%), Positives = 151/185 (81%), Gaps = 5/185 (2%)

Query: 53  HLLSLALTATFNSPLPCLAVPSVNSQFPLLSPTTPFSQSKNLQLGLQEDGKIRPCPSTNP 112
            L+S AL  +  S  P LA+PS++S  PL   TTPF+QSK +Q GL  +GKIRPCPSTNP
Sbjct: 46  KLISFALALSLTSSSPALAIPSLSSSQPL---TTPFTQSKFVQTGLL-NGKIRPCPSTNP 101

Query: 113 GCVSTNPKSSSFAFPLRIPENSTENAIQKLQEAILKTQKNAKIGVVEDTPFGQYLQAEVD 172
           GCVSTNP SSSF+FPL IPE  T++ IQKL+EAI+ TQKN K  V+EDTP+G+YL+AEV+
Sbjct: 102 GCVSTNPTSSSFSFPLTIPETDTQDPIQKLKEAIMSTQKNPKFVVLEDTPYGRYLEAEVE 161

Query: 173 -GGFGRDVLEFLVKGDVVAYRSVAKKVTYVYPFTTALGDSKGQEERMKQIIAELGWYAPS 231
            GGF RDV+EFLVK DVVAYR +A KVT+VYPFTTA GDSKGQEERMK++I +LGWYAP+
Sbjct: 162 GGGFSRDVMEFLVKQDVVAYRCMATKVTFVYPFTTAFGDSKGQEERMKKLIDQLGWYAPT 221

Query: 232 FDSME 236
           F+SME
Sbjct: 222 FESME 226

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	236
TAIR|locus:2117268	225	AT4G24930 "AT4G24930" [Arabido	0.699	0.733	0.688	2.7e-59

TAIR|locus:2117268 AT4G24930 "AT4G24930" [Arabidopsis thaliana (taxid:3702)]

 Score = 608 (219.1 bits), Expect = 2.7e-59, P = 2.7e-59
 Identities = 117/170 (68%), Positives = 144/170 (84%)

Query:    68 PCLAVPSVNSQFPLLSPTTPFSQSKNLQLGLQEDGKIRPCPSTNPGCVSTNPKSSSFAFP 127
             P LA+PS++S  PL   TTPF+QSK +Q GL  +GKIRPCPSTNPGCVSTNP SSSF+FP
Sbjct:    60 PALAIPSLSSSQPL---TTPFTQSKFVQTGLL-NGKIRPCPSTNPGCVSTNPTSSSFSFP 115

Query:   128 LRIPENSTENAIQKLQEAILKTQKNAKIGVVEDTPFGQYLQAEVDGG-FGRDVLEFLVKG 186
             L IPE  T++ I+KL+EAI+ TQKN K  V+EDTP+G+Y++AEV+GG F RDV+EFLVK 
Sbjct:   116 LTIPETDTQDPIEKLKEAIMSTQKNPKFVVLEDTPYGRYVEAEVEGGGFSRDVMEFLVKQ 175

Query:   187 DVVAYRSVAKKVTYVYPFTTALGDSKGQEERMKQIIAELGWYAPSFDSME 236
             DVVAYR +A KVT+VYPFTTA GDSKGQEER+K++I +LGWYAP+F+SME
Sbjct:   176 DVVAYRCMATKVTFVYPFTTAFGDSKGQEERLKKLIDQLGWYAPTFESME 225


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.134   0.404    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      236       207   0.00099  111 3  11 22  0.40    33
                                                     31  0.47    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  584 (62 KB)
  Total size of DFA:  157 KB (2094 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.26u 0.09s 20.35t   Elapsed:  00:00:01
  Total cpu time:  20.26u 0.09s 20.35t   Elapsed:  00:00:01
  Start:  Mon May 20 17:02:54 2013   End:  Mon May 20 17:02:55 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SW33	TL1Y_ARATH	No assigned EC number	0.6542	0.7754	0.8133	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	236
COG4446	141	Uncharacterized protein conserved in bacteria [Fun	100.0
PF07386	118	DUF1499: Protein of unknown function (DUF1499); In	99.96

>COG4446 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=100.00  E-value=1.6e-38  Score=260.01  Aligned_cols=122  Identities=34%  Similarity=0.568  Sum_probs=110.9

Q ss_pred             CCCCCCCCCCCCcCCCCCcCCCCCCCCCeeecCCC-CCCCccCCcCCCCCHHHHHHHHHHHHHHHCCCcEEEEeecCCCC
Q 026604           86 TPFSQSKNLQLGLQEDGKIRPCPSTNPGCVSTNPK-SSSFAFPLRIPENSTENAIQKLQEAILKTQKNAKIGVVEDTPFG  164 (236)
Q Consensus        86 ~pfs~s~~~~lGl~~~G~L~pCP~~sPNCVSSq~~-~~~~~~P~~~~~~s~~~A~~~L~~AvL~s~~~~kIv~~e~~~~g  164 (236)
                      -+|+++ +-++|+ .+|+|+|||+ +|||||||.. .-|.++|+-| -.+++.|.++|+. |+..+||++|+++.+    
T Consensus        10 a~f~~s-~~~lGV-~sgrlapCpn-~PNCVssQ~adt~h~iaPl~f-~~~~~~a~e~l~~-il~~lP~t~ive~~~----   80 (141)
T COG4446          10 AAFSGS-PCNLGV-DSGRLAPCPN-SPNCVSSQDADTKHAIAPLNF-ILDPGVAIEQLER-ILLSLPGTVIVEKND----   80 (141)
T ss_pred             hhhccC-ccccCc-ccCcccCCCC-CCCeeecccccchhccccccc-ccCHHHHHHHHHH-HHhhCCCceEeecCc----
Confidence            358888 788999 9999999999 8999999997 5566778777 5899999999976 999999999999998    


Q ss_pred             CeEEEEEec---cccCccEEEEEcC--CEEEEEeeccccCcccCCcccCCChHHHHHHHHHHHHHhC
Q 026604          165 QYLQAEVDG---GFGRDVLEFLVKG--DVVAYRSVAKKVTYVYPFTTALGDSKGQEERMKQIIAELG  226 (236)
Q Consensus       165 ~YL~Ae~~S---gF~dDvvEFl~~~--~vV~vRSaSrRvGyvyP~~t~~SD~GvNRkRvE~IR~~Lg  226 (236)
                      +||||||+|   ||+||+ |||+++  ++|+||||| |+||        |||||||+|+|+||.+||
T Consensus        81 nYl~ae~~Srlf~FVDDl-Efyl~~d~~vi~vRSaS-RiG~--------SDlGVNRrR~EqiR~kl~  137 (141)
T COG4446          81 NYLRAECTSRLFGFVDDL-EFYLPQDHNVIWVRSAS-RIGY--------SDLGVNRRRAEQIRLKLG  137 (141)
T ss_pred             hHHHHHHHHHHhhcccce-EEecCCCCceEEEeecc-cccc--------ccccccHHHHHHHHHHhh
Confidence            999999999   788776 999987  689999999 8999        999999999999999996

>PF07386 DUF1499: Protein of unknown function (DUF1499); InterPro: IPR010865 This family consists of several hypothetical bacterial and plant proteins of around 125 residues in length

Probab=99.96  E-value=1.1e-28  Score=196.97  Aligned_cols=107  Identities=29%  Similarity=0.429  Sum_probs=94.6

Q ss_pred             CcCCCCCCCCCeeecCCC----CCCCccCCcCCCCCHHHHHHHHHHHHHHHCCCcEEE-EeecCCCCCeEEEEEec---c
Q 026604          103 KIRPCPSTNPGCVSTNPK----SSSFAFPLRIPENSTENAIQKLQEAILKTQKNAKIG-VVEDTPFGQYLQAEVDG---G  174 (236)
Q Consensus       103 ~L~pCP~~sPNCVSSq~~----~~~~~~P~~~~~~s~~~A~~~L~~AvL~s~~~~kIv-~~e~~~~g~YL~Ae~~S---g  174 (236)
                      .|.+||+ +||||||+..    ..+++.||.+ .+++++++++|+. +++.+++.+|+ ..+    ++||+|+++|   |
T Consensus         2 dl~~~~~-~P~~~ss~~~~~~~~~~~i~P~~~-~~~~~~~~~~l~~-~~~~~~~~~v~~~~~----~~~l~a~~~s~~~g   74 (118)
T PF07386_consen    2 DLSTCPS-SPNCVSSAADAPRDAYPDIAPLTY-PGSPEEAFAALEA-AVEALPWTVVVDDQS----DGYLEAVARSPLFG   74 (118)
T ss_pred             CCCCCCC-CCCeeeeccccccccCCCCCCEec-CCCHHHHHHHHHH-HHHHCCCcEEeccCC----CCEEEEEEEecccC
Confidence            5899999 8999999864    6889999998 6899999999976 89999998887 333    5899999999   6


Q ss_pred             ccCccEEEEEcC--CEEEEEeeccccCcccCCcccCCChHHHHHHHHHHHHHhC
Q 026604          175 FGRDVLEFLVKG--DVVAYRSVAKKVTYVYPFTTALGDSKGQEERMKQIIAELG  226 (236)
Q Consensus       175 F~dDvvEFl~~~--~vV~vRSaSrRvGyvyP~~t~~SD~GvNRkRvE~IR~~Lg  226 (236)
                      |.||+ ||++.+  +.|++||+| |+||        +|||+||+|||+|+++|.
T Consensus        75 F~DDv-~i~~~~~~~~v~vRS~S-R~G~--------~DlG~Nr~Ri~~~~~~L~  118 (118)
T PF07386_consen   75 FPDDV-EIRVRPEEGRVDVRSAS-RVGY--------SDLGVNRRRIEALRAALE  118 (118)
T ss_pred             CCcEE-EEEEeCCCCEEEEEEec-cCCC--------CccchhHHHHHHHHHHhC
Confidence            77666 999976  599999999 8999        999999999999999984

The function of this family is unknown.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00