Citrus Sinensis ID: 026685

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-----
Protein Sequence
MLQTHHLLSLNFPFTVSHHPQKLNFLQKPTISLSAFPRRRPLIEPYCLAQAQEPTTNITAPTTSEEGPVELPQSIFATTDEPSSLQVATSVLLTGAISVFLFRALRRRAKRAKELKFRSSGAKKSLKDEALDNLKALGSSSIDAKGPPSPVQALLGGLTAGVIAIILYKFTTTIEAALNRQTISDNFSVCASNNNNNKDYCKWVVLPCNICFWHQLSWFVSIFWPACPEFFHRRF
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEEEccccEEEEEEEEccEEEEEEHHHHHcccccccccHHcccc
Secondary Structure Prediction (SSPRO)
cccccccccccccEEEcccccccccccccccccccccccccccccEEEccccccccccccccccccccEEccccHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEccccccccEEEEEccccEEEccccccEEEEccccccHHHcccc
Coil and Loop (DISEMBL)
mlqthhllslnfpftvshhpqklnflqkptislsafprrrpliepyclaqaqepttnitapttseegpvelpqsifattdepsslQVATSVLLTGAISVFLFRALRRRAKRAKELKFRSSGAKKSLKDEALDNLKAlgsssidakgppspvqaLLGGLTAGVIAIILYKFTTTIEAALNRQTISDNFsvcasnnnnnkdyckwvvlpcnicfwhQLSWFVsifwpacpeffhrrf
Flexible Loop (DISEMBL)
MLQTHHLLSLNFPFTVSHHPQKLNFLQKPTISLSAFPRRRPLIEPYCLAQAQEPTTNITAPTTSEEGPVELPQSIFATTDEPSSLQVATSVLLTGAISVFLFRALRRRAkrakelkfrssgakkslkdeALDNLKALgsssidakgppSPVQALLGGLTAGVIAIILYKFTTTIEAALNRQTISDNFSVCASNNNNNKDYCKWVVLPCNICFWHQLSWFVSIFWPACPEFFHRRF
Low Complexity Region (SEG)
MLQTHHLLSLNFPFTVSHHPQKLNFLQKPTISLSAFPRRRPLIEPYCLAQAQEPTTNITAPTTSEEGPVELPQSIFATTDEPSSLQVATSVLLTGAISVflfralrrrakrakelkfrSSGAKKSLKDEALDNLKALGSSSIDAKGPPSPVQALLGGLTAGVIAIILYKFTTTIEAALNRQTISDNFSVCASnnnnnKDYCKWVVLPCNICFWHQLSWFVSIFWPACPEFFHRRF
Disordered region (IsUnstruct)
*****HLLSLNFPFTVSHHPQKLNFLQKPTISLSAF************************************************LQVATSVLLTGAISVFLFRALRR********************************************QALLGGLTAGVIAIILYKFTTTIEAALNRQTISDNF************************************************
Disordered Region (DISOPRED)
**********NFPFTVSHHPQK*******************LIEPYCLAQAQEPT*************VELPQSIFATTDEPSSLQVATSVLLTGAISVFLFRALRRRA*******************************************ALLGGLTAGVIAIILYKFTTTIEAALNRQTISDNFSVCASNNNNNKDYCKWVVLPCNICFWHQLSWFVSIFWPACPEFFHRR*
Disordered Region (DISEMBL)
MLQTHHLLSLNFPFTVSHHPQKLNFLQKPTISLSAFPRRRPLIEPYCLAQAQEPTTNITAPTTSEEGPVELPQSIFATTDEPSSLQVATSVLLTGAISVFLFRALRRRAKRAKELKFRSSGAKKSLKDEALDNLKALGSSSIDAKGPPSPVQALLGGLTAGVIAIILYKFTTTIEAALNRQTISDNFSVCASNNNNNKDYCKWVVLPCNICFWHQLSWFVSIFWPACPEFFHRRF
Disordered Region (DISPRO)
***THHLLSLNFPFTVSHHPQKLNFLQKPTISLSAFPRRRPLIEPYCLAQAQEP***********EGPVELPQSIFATTDEPSSLQVATSVLLTGAISVFLFRALRRRAKRAKELKFRS***************KALGSSSIDAKGPPSPVQALLGGLTAGVIAIILYKFTTTIEAALNRQTISDNFSVCASNNNNNKDYCKWVVLPCNICFWHQLSWFVSIFWPACPEFFHRRF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLQTHHLLSLNFPFTVSHHPQKLNFLQKPTISLSAFPRRRPLIEPYCLAQAQEPTTNITAPTTSEEGPVELPQSIFATTDEPSSLQVATSVLLTGAISVFLFRALRRRAKRAKELKFRSSGAKKSLKDEALDNLKALGSSSIDAKGPPSPVQALLGGLTAGVIAIILYKFTTTIEAALNRQTISDNFSVCASNNNNNKDYCKWVVLPCNICFWHQLSWFVSIFWPACPEFFHRRF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	235
225461564	277	PREDICTED: uncharacterized protein LOC10	0.574	0.487	0.753	9e-51
449457015	282	PREDICTED: uncharacterized protein LOC10	0.787	0.656	0.613	1e-50
118488906	238	unknown [Populus trichocarpa x Populus d	0.787	0.777	0.611	1e-49
224116710	211	predicted protein [Populus trichocarpa]	0.493	0.549	0.810	3e-47
356544064	277	PREDICTED: uncharacterized protein LOC10	0.714	0.606	0.59	1e-45
388496044	230	unknown [Medicago truncatula]	0.693	0.708	0.522	4e-45
255564541	285	conserved hypothetical protein [Ricinus	0.795	0.656	0.595	7e-43
297834372	261	hypothetical protein ARALYDRAFT_478942 [	0.757	0.681	0.53	2e-42
21617902	266	unknown [Arabidopsis thaliana]	0.757	0.669	0.54	3e-42
18400636	266	uncharacterized protein [Arabidopsis tha	0.757	0.669	0.54	5e-42

>gi|225461564|ref|XP_002282834.1| PREDICTED: uncharacterized protein LOC100267434 [Vitis vinifera] gi|302142945|emb|CBI20240.3| unnamed protein product [Vitis vinifera]

 Score =  206 bits (523), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 107/142 (75%), Positives = 122/142 (85%), Gaps = 7/142 (4%)

Query: 51  AQEPTTNITAPTTSEEGPVELP---QSIFATTDEPSSLQVATSVLLTGAISVFLFRALRR 107
           AQ P T  TAP   EEGP+ELP    SIFAT D+P+ LQVATSVLLTGAISVFLFR++RR
Sbjct: 53  AQVPDTTTTAP---EEGPIELPPSSSSIFATNDDPTPLQVATSVLLTGAISVFLFRSIRR 109

Query: 108 RAKRAKELKFRSSGAKKSLKDEALDNLKALGSSSIDAKGPPSPVQALLGGLTAGVIAIIL 167
           R KRAKEL+FRSSG KK+LK+EALD+LKA+GS S+ A  PPSPVQALLGG+TAGVIA+IL
Sbjct: 110 RVKRAKELRFRSSGVKKTLKEEALDSLKAMGSGSVKA-APPSPVQALLGGITAGVIALIL 168

Query: 168 YKFTTTIEAALNRQTISDNFSV 189
           YKFT TIEA+LNRQT+SDNFSV
Sbjct: 169 YKFTITIEASLNRQTVSDNFSV 190

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457015|ref|XP_004146244.1| PREDICTED: uncharacterized protein LOC101221005 [Cucumis sativus] gi|449495512|ref|XP_004159863.1| PREDICTED: uncharacterized LOC101221005 [Cucumis sativus]

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 122/199 (61%), Positives = 145/199 (72%), Gaps = 14/199 (7%)

Query: 1   MLQTHHLLSLNFP-FTVS--HHPQKLNFLQKPTISLSAFPR------RRPLIEPYCLAQA 51
           M  T +LLS NFP FT+S   +  KL FL  PT +LS+  R        PL    C    
Sbjct: 1   MWHTQNLLSSNFPLFTLSPPTYNHKL-FLSPPT-TLSSLHRPITFHSVSPLTNHRCFCLP 58

Query: 52  QEPTTNITAPT-TSEEGPVELPQSIFATTDEPSSLQVATSVLLTGAISVFLFRALRRRAK 110
           Q   T++   T   + GPVELP +IFATTD+PSSLQVATSVLLTGAISVFLFR+LRRRAK
Sbjct: 59  Q--FTDLADATFLDDNGPVELPPTIFATTDDPSSLQVATSVLLTGAISVFLFRSLRRRAK 116

Query: 111 RAKELKFRSSGAKKSLKDEALDNLKALGSSSIDAKGPPSPVQALLGGLTAGVIAIILYKF 170
           R KELKFRS G KKSLK+EA+D+LKA+ +  I++K  PSP+QA LG + AGVIA+ILYKF
Sbjct: 117 RVKELKFRSGGVKKSLKEEAMDSLKAISTGPIESKSTPSPIQAFLGAIAAGVIALILYKF 176

Query: 171 TTTIEAALNRQTISDNFSV 189
           TTTIEA+LNRQT+SDNFSV
Sbjct: 177 TTTIEASLNRQTVSDNFSV 195

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118488906|gb|ABK96262.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 121/198 (61%), Positives = 142/198 (71%), Gaps = 13/198 (6%)

Query: 2   LQTHHLLSLN---FPFT---VSHHPQKLNFLQKPTI----SLSAFPRRRPLIEPYCLAQA 51
           LQ H+   L+   FP +    +HH   L FL +P I    +LSA PR RP   P  LAQ 
Sbjct: 4   LQCHNFHPLSPQIFPLSHHHTNHHLYPLKFLYRPPIFTPFTLSALPRSRP-DPPLWLAQL 62

Query: 52  QEPTTNITAPTTSEEGPVELPQSIFATTDEPSSLQVATSVLLTGAISVFLFRALRRRAKR 111
            E           E   +    SIFAT+D+PSS+QVATSVLLTGAISVFLFR+LRRRAKR
Sbjct: 63  PEQAPEPEEEGPIEI--LRSSPSIFATSDDPSSIQVATSVLLTGAISVFLFRSLRRRAKR 120

Query: 112 AKELKFRSSGAKKSLKDEALDNLKALGSSSIDAKGPPSPVQALLGGLTAGVIAIILYKFT 171
           +KELKFRSSGAKK+LK+EALD+LK  GS+ ID K PPSPVQA LG ++AGVIA+ILYKFT
Sbjct: 121 SKELKFRSSGAKKTLKEEALDSLKTFGSAPIDVKKPPSPVQAFLGAISAGVIALILYKFT 180

Query: 172 TTIEAALNRQTISDNFSV 189
           TTIEA+LNRQT+SDNFSV
Sbjct: 181 TTIEASLNRQTVSDNFSV 198

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116710|ref|XP_002317372.1| predicted protein [Populus trichocarpa] gi|222860437|gb|EEE97984.1| predicted protein [Populus trichocarpa]

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 94/116 (81%), Positives = 109/116 (93%)

Query: 74  SIFATTDEPSSLQVATSVLLTGAISVFLFRALRRRAKRAKELKFRSSGAKKSLKDEALDN 133
           SIFAT+D+PSS+QVATSVLLTGAISVFLFR+LRRRAKR+KELKFRSSGAKK+LK+EALD+
Sbjct: 16  SIFATSDDPSSIQVATSVLLTGAISVFLFRSLRRRAKRSKELKFRSSGAKKTLKEEALDS 75

Query: 134 LKALGSSSIDAKGPPSPVQALLGGLTAGVIAIILYKFTTTIEAALNRQTISDNFSV 189
           LK  GS+ ID K PPSPVQA LG ++AGVIA+ILYKF+TTIEA+LNRQT+SDNFSV
Sbjct: 76  LKTFGSAPIDVKKPPSPVQAFLGAISAGVIALILYKFSTTIEASLNRQTVSDNFSV 131

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544064|ref|XP_003540475.1| PREDICTED: uncharacterized protein LOC100799393 [Glycine max]

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 118/200 (59%), Positives = 141/200 (70%), Gaps = 32/200 (16%)

Query: 5   HHLLSLNFPFTVSHHPQK--LNFL----QKPTI----SLSAFPRRRPLIEPYCLAQAQEP 54
           HHLL   FP T++HH  K  L+ L     KPTI    S SA P       P+    A   
Sbjct: 8   HHLL---FPLTLAHHKVKPPLSILPPLHHKPTILHSVSASAIP-------PWAAQLADAA 57

Query: 55  TTNITAPTTSEEGPVELP----QSIFATTDEPSSLQVATSVLLTGAISVFLFRALRRRAK 110
               T      EGPVELP     SIFAT+D+PS +QVA+SVLLTGA+SVFLFR+LRRRA+
Sbjct: 58  ADIDT------EGPVELPFSSTPSIFATSDDPSPIQVASSVLLTGAVSVFLFRSLRRRAQ 111

Query: 111 RAKELKFRSSGAKKSLKDEALDNLKALGSSSIDAK-GPPSPVQALLGGLTAGVIAIILYK 169
           R K+ +FRSSG +KS+K+EALD+LKA+GS+S+ AK    SPVQALLGG++AGVIA+ILYK
Sbjct: 112 RVKQSQFRSSG-EKSIKEEALDSLKAMGSASVKAKEDSASPVQALLGGISAGVIALILYK 170

Query: 170 FTTTIEAALNRQTISDNFSV 189
           F TTIEAALNRQTISDNFSV
Sbjct: 171 FATTIEAALNRQTISDNFSV 190

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388496044|gb|AFK36088.1| unknown [Medicago truncatula]

 Score =  187 bits (474), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 94/180 (52%), Positives = 128/180 (71%), Gaps = 17/180 (9%)

Query: 66  EGPVELPQ----SIFATTDEPSSLQVATSVLLTGAISVFLFRALRRRAKRAKELKFRSSG 121
           +GP+E+P     S+ ++TD+PS +Q+A S+LLTGAISV LFR+ RRRAKR K+ +FRSSG
Sbjct: 57  DGPIEIPYDSTPSLLSSTDDPSFIQIAASLLLTGAISVLLFRSFRRRAKRLKQTQFRSSG 116

Query: 122 AKKSLKDEALDNLKALGSSSID-AKGPPSPVQALLGGLTAGVIAIILYKFTTTIEAALNR 180
            +KS+K+EAL+ LKA+G++SI+  KGPPSPVQ  LG ++AGVI++ILYKF T IEA L+R
Sbjct: 117 -EKSVKEEALETLKAMGTASIETTKGPPSPVQTFLGAISAGVISLILYKFATIIEAGLSR 175

Query: 181 QTISDNFS-----VCASNNNNNKDYCKWVVLPCNICFWHQLSWFVSIFWPACPEFFHRRF 235
           QTISD+FS     +      N   Y           FW +L W +++FWP CP+ F+RRF
Sbjct: 176 QTISDDFSARQITITVRTIINGLTYL------ATFYFWPELPWSITLFWPTCPQIFYRRF 229

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564541|ref|XP_002523266.1| conserved hypothetical protein [Ricinus communis] gi|223537479|gb|EEF39105.1| conserved hypothetical protein [Ricinus communis]

 Score =  179 bits (455), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 119/200 (59%), Positives = 143/200 (71%), Gaps = 13/200 (6%)

Query: 1   MLQTHHLLSLN--FPFTVSHHPQK-----LNFLQKPTISLSAFPRRRPLIEPYCLAQAQE 53
           ML  HH +     FP    HH         +   KPT SLS F    P  +P     ++ 
Sbjct: 1   MLHCHHYIPSPQFFPRNHHHHTSTPYLSLTSSFSKPT-SLSTF-SALPPSKPDIWLASEP 58

Query: 54  PTTNITAPTTSEEGPVELP----QSIFATTDEPSSLQVATSVLLTGAISVFLFRALRRRA 109
                 +P+  E+GP+ELP     SIFATTD+PS +QVATSVLLTG+I VFLFRALRRRA
Sbjct: 59  TPVTPPSPSPEEDGPIELPFPSSPSIFATTDDPSPIQVATSVLLTGSIGVFLFRALRRRA 118

Query: 110 KRAKELKFRSSGAKKSLKDEALDNLKALGSSSIDAKGPPSPVQALLGGLTAGVIAIILYK 169
           KRAKELKFRSSGAKK++K+EALD+LKA+GS+SIDA+ PPSP+Q  LGG++A VIA+ILYK
Sbjct: 119 KRAKELKFRSSGAKKTMKEEALDSLKAMGSASIDAQKPPSPLQTFLGGVSAAVIALILYK 178

Query: 170 FTTTIEAALNRQTISDNFSV 189
           FTTTIEAALNRQT+SDNFSV
Sbjct: 179 FTTTIEAALNRQTVSDNFSV 198

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297834372|ref|XP_002885068.1| hypothetical protein ARALYDRAFT_478942 [Arabidopsis lyrata subsp. lyrata] gi|297330908|gb|EFH61327.1| hypothetical protein ARALYDRAFT_478942 [Arabidopsis lyrata subsp. lyrata]

 Score =  177 bits (450), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 106/200 (53%), Positives = 135/200 (67%), Gaps = 22/200 (11%)

Query: 1   MLQTHHLLSLNFPFTVSHHPQKLNFLQKPTISLSAFPRRRPLIEPYCLAQAQEPTTNITA 60
           +LQ+H        FT+ H  +    +  P  SLS+F R RP  +   ++  +E       
Sbjct: 3   VLQSHQC-----RFTLPHRLRPTRLIS-PIHSLSSFTRIRP--DRIRVSVVKEIAD---V 51

Query: 61  PTTSEEGPVELPQS----------IFATTDEPSSLQVATSVLLTGAISVFLFRALRRRAK 110
               E+GP+ELP S          IFAT+D+P+ LQ+ATSVLLTGAI+VFL R++RRRAK
Sbjct: 52  AEVEEDGPIELPPSSTSPFSSTNSIFATSDDPTPLQLATSVLLTGAITVFLIRSVRRRAK 111

Query: 111 RAKELKFRSSGAKKSLKDEALDNLKALGSSSID-AKGPPSPVQALLGGLTAGVIAIILYK 169
           RAKEL+FRS+GAKKSLK+EA+DNLKALGS+ I+     PS  QA LG + AGVIA+ILYK
Sbjct: 112 RAKELRFRSTGAKKSLKEEAMDNLKALGSTPIEGGNSTPSAAQAFLGAIAAGVIALILYK 171

Query: 170 FTTTIEAALNRQTISDNFSV 189
           FT T+E+ LNRQTISDNFSV
Sbjct: 172 FTVTVESGLNRQTISDNFSV 191

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21617902|gb|AAM66952.1| unknown [Arabidopsis thaliana]

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 108/200 (54%), Positives = 136/200 (68%), Gaps = 22/200 (11%)

Query: 1   MLQTHHLLSLNFPFTVSHHPQKLNFLQKPTISLSAFPRRRPLIEPYCLAQAQEPTTNITA 60
           +LQ+H  L  + P+ +   P +L     P  SLS+F R RP I    L+  +E       
Sbjct: 3   VLQSHQCL-FSLPYRL--RPTRL---ISPIHSLSSFTRIRPGI--IRLSAVKEIAD---V 51

Query: 61  PTTSEEGPVELPQS----------IFATTDEPSSLQVATSVLLTGAISVFLFRALRRRAK 110
               E+GP+ELP S          IFAT+D+P+ LQ+ATSVLLTGAI+VFL R++RRRAK
Sbjct: 52  AEVEEDGPIELPTSSTSPFSSTNSIFATSDDPTPLQLATSVLLTGAITVFLIRSVRRRAK 111

Query: 111 RAKELKFRSSGAKKSLKDEALDNLKALGSSSID-AKGPPSPVQALLGGLTAGVIAIILYK 169
           RAKEL+FRS+GAKKSLK+EA+DNLKAL S+ I+     PS  QA LG + AGVIA+ILYK
Sbjct: 112 RAKELQFRSTGAKKSLKEEAMDNLKALSSTPIEGGNSTPSAAQAFLGAIAAGVIALILYK 171

Query: 170 FTTTIEAALNRQTISDNFSV 189
           FT T+E+ LNRQTISDNFSV
Sbjct: 172 FTVTVESGLNRQTISDNFSV 191

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18400636|ref|NP_566500.1| uncharacterized protein [Arabidopsis thaliana] gi|87116616|gb|ABD19672.1| At3g15110 [Arabidopsis thaliana] gi|332642098|gb|AEE75619.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  176 bits (447), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 108/200 (54%), Positives = 135/200 (67%), Gaps = 22/200 (11%)

Query: 1   MLQTHHLLSLNFPFTVSHHPQKLNFLQKPTISLSAFPRRRPLIEPYCLAQAQEPTTNITA 60
           +LQ+H  L  + P+ +   P +L     P  SLS+F R RP I    L+  +E       
Sbjct: 3   VLQSHQCL-FSLPYRL--RPTRL---ISPIHSLSSFTRIRPGI--IRLSAVKEIAD---V 51

Query: 61  PTTSEEGPVELPQS----------IFATTDEPSSLQVATSVLLTGAISVFLFRALRRRAK 110
               E+GP+ELP S          IFAT+D+P+ LQ+ATSVLLTGAI+VFL R++RRRAK
Sbjct: 52  AEVEEDGPIELPTSSTSPFSSTNSIFATSDDPTPLQLATSVLLTGAITVFLIRSVRRRAK 111

Query: 111 RAKELKFRSSGAKKSLKDEALDNLKALGSSSID-AKGPPSPVQALLGGLTAGVIAIILYK 169
           RAKEL FRS+GAKKSLK+EA+DNLKAL S+ I+     PS  QA LG + AGVIA+ILYK
Sbjct: 112 RAKELTFRSTGAKKSLKEEAMDNLKALSSTPIEGGNSTPSAAQAFLGAIAAGVIALILYK 171

Query: 170 FTTTIEAALNRQTISDNFSV 189
           FT T+E+ LNRQTISDNFSV
Sbjct: 172 FTVTVESGLNRQTISDNFSV 191

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	235
TAIR|locus:2083676	266	AT3G15110 "AT3G15110" [Arabido	0.757	0.669	0.465	1.8e-32

TAIR|locus:2083676 AT3G15110 "AT3G15110" [Arabidopsis thaliana (taxid:3702)]

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 93/200 (46%), Positives = 120/200 (60%)

Query:     1 MLQTHHLLSLNFPFTVSHHPQKLNFLQKPTISLSAFPRRRPLIEPYCLAQAQEPTTNITA 60
             +LQ+H  L  + P+ +   P +L     P  SLS+F R RP I    L+  +E   ++  
Sbjct:     3 VLQSHQCL-FSLPYRL--RPTRLI---SPIHSLSSFTRIRPGI--IRLSAVKE-IADVAE 53

Query:    61 PTTSEEGPVELP----------QSIFATTDEPSSLQVATSVLLTGAISVXXXXXXXXXXX 110
                 E+GP+ELP           SIFAT+D+P+ LQ+ATSVLLTGAI+V           
Sbjct:    54 --VEEDGPIELPTSSTSPFSSTNSIFATSDDPTPLQLATSVLLTGAITVFLIRSVRRRAK 111

Query:   111 XXXXXXXXSSGAKKSLKDEALDNLKALGSSSIDA-KGPPSPVQALLGGLTAGVIAIILYK 169
                     S+GAKKSLK+EA+DNLKAL S+ I+     PS  QA LG + AGVIA+ILYK
Sbjct:   112 RAKELTFRSTGAKKSLKEEAMDNLKALSSTPIEGGNSTPSAAQAFLGAIAAGVIALILYK 171

Query:   170 FTTTIEAALNRQTISDNFSV 189
             FT T+E+ LNRQTISDNFSV
Sbjct:   172 FTVTVESGLNRQTISDNFSV 191


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.133   0.412    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      235       211   0.00081  112 3  11 22  0.48    32
                                                     31  0.48    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  603 (64 KB)
  Total size of DFA:  176 KB (2102 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.08u 0.18s 20.26t   Elapsed:  00:00:01
  Total cpu time:  20.08u 0.18s 20.26t   Elapsed:  00:00:01
  Start:  Sat May 11 01:49:31 2013   End:  Sat May 11 01:49:32 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	235
PF11282	82	DUF3082: Protein of unknown function (DUF3082); In	99.77
COG1963	153	Uncharacterized protein conserved in bacteria [Fun	83.32

>PF11282 DUF3082: Protein of unknown function (DUF3082); InterPro: IPR021434 This family of proteins has no known function

Probab=99.77  E-value=5e-20  Score=141.02  Aligned_cols=63  Identities=27%  Similarity=0.365  Sum_probs=60.9

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC-CCceeeeeeec-----cCceeeeeeccccc
Q 026685          147 PPSPVQALLGGLTAGVIAIILYKFTTTIEAALNRQTIS-DNFSVCASNNN-----NNKDYCKWVVLPCN  209 (235)
Q Consensus       147 ppSP~QallGav~AGvIA~iLYkFTT~IeaSf~rQ~lp-DnysaRnItIt-----~GL~YLatfV~~an  209 (235)
                      +|||+|||+||++||+||+++|+||++|+++|++||++ |||+++||+++     +|+|||+||+|+.|
T Consensus         1 ~~~Pl~~l~Ga~~ag~la~~ly~lt~~i~~~fa~~p~~s~~~~a~~Ia~~vRTlv~Gl~~LaTfiF~~~   69 (82)
T PF11282_consen    1 KPTPLRCLSGALIAGGLAYGLYFLTTSIAASFASKPIHSSNYIAQNIASAVRTLVVGLCYLATFIFGFV   69 (82)
T ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            48999999999999999999999999999999999999 99999999998     79999999999877

>COG1963 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=83.32  E-value=5.8  Score=34.46  Aligned_cols=24  Identities=33%  Similarity=0.535  Sum_probs=22.0

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHH
Q 026685          147 PPSPVQALLGGLTAGVIAIILYKF  170 (235)
Q Consensus       147 ppSP~QallGav~AGvIA~iLYkF  170 (235)
                      -=+|+|.|.|.+++.+|++++|.|
T Consensus       127 GH~p~eV~~G~~lGI~i~~i~~~~  150 (153)
T COG1963         127 GHTPLEVFAGLLLGILIAWIFYAF  150 (153)
T ss_pred             CCChHHHHHHHHHHHHHHHHHHHH
Confidence            368999999999999999999976

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00