Citrus Sinensis ID: 026687

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-----
Protein Sequence
MPPKRRGRPAKKALPSNAEEAKESQLEDKDAELFYREVERQCAAVRAIRDVELEQTLTGLRLLRSYFNEEQMQTPVLQFFEENLPNLTVLRDDKNGKFEVRWKDEDGNFYMDNADGKDIHASLLHRMSIGYPYCSGAPSFSGYGFSSKAVKTNLLGVDNLQIGDFVLEEPSNSQMFGMHEALRTPGVTSQRLSVGVTPKTLRQPKRGEMLLSVHGSPLGVYEEDNMGAIQESEEG
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHccHHHHHHHHHccccEEEEcccccEEEEEEcccccccccccccccHHHHHHHHHccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccEEEccccccccccccccEEEEEccccccccccccHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHcccHHHHHHHccccEEEEEcccccEEEEEEccccccEEEcccccccEEHHHHHcccEEcccccccccccccccccHHHHHHHccccccccccEEEcccccccccccHHHcccccccccEEEcccccccEcccccccEEEEEcccccccEcHHHHHHHHccccc
Coil and Loop (DISEMBL)
mppkrrgrpakkalpsnaeeakesqledkDAELFYREVERQCAAVRAIRDVELEQTLTGLRLLRSYfneeqmqtPVLQFfeenlpnltvlrddkngkfevrwkdedgnfymdnadgkdiHASLLHRmsigypycsgapsfsgygfsskAVKTnllgvdnlqigdfvleepsnsqmfgmhealrtpgvtsqrlsvgvtpktlrqpkrgemllsvhgsplgvyeednmgaiqeseeg
Flexible Loop (DISEMBL)
mppkrrgrpakkalpsnaeeakesqledkDAELFYREVERQCAAVRAIRDVELEQTLTGLRLLRSYFNEEQMQTPVLQFFEENLpnltvlrddkngkfEVRWkdedgnfymdnADGKDIHASLLHRMSIGYPYCSGAPSFSGYGFSSKAVKTNLLGVDNLQIGDFVLEEPSNSQMFGMHEALRtpgvtsqrlsvgvtpktlrqpkrgemllsvhgsplgvyeednMGAIQESEEG
Low Complexity Region (SEG)
MPPKRRGRPAKKALPSNAEEAKESQLEDKDAELFYREVERQCAAVRAIRDVELEQTLTGLRLLRSYFNEEQMQTPVLQFFEENLPNLTVLRDDKNGKFEVRWKDEDGNFYMDNADGKDIHASLLHRMSIGYPYCSGAPSFSGYGFSSKAVKTNLLGVDNLQIGDFVLEEPSNSQMFGMHEALRTPGVTSQRLSVGVTPKTLRQPKRGEMLLSVHGSPLGVYEEDNMGAIQESEEG
Disordered region (IsUnstruct)
*******************************ELFYREVERQCAAVRAIRDVELEQTLTGLRLLRSYFNEEQMQTPVLQFFEENLPNLTVLRDDKNGKFEVRWKDEDGNFYMDNADGKDIHASLLHRMSIGYPYCSGAPSFSGYGFSSKAVKTNLLGVDNLQIGDFVLE*******************************************************************
Disordered Region (DISOPRED)
*******************************ELFYREVERQCAAVRAIRDVELEQTLTGLRLLRSYFNEEQMQTPVLQFFEENLPNLTVLRDDKNGKFEVRWKDEDGNFYMDNADGKDIHASLLHRMSIGYPYCSGAPSFSGYGFSSKAVKTNLLGVDNLQIGDFVLEEPS**********LRT*GVTSQRLSVGVTPKTLRQPKRGEMLLSVHGSPLGVYEEDN**********
Disordered Region (DISEMBL)
***************************DKDAELFYREVERQCAAVRAIRDVELEQTLTGLRLLRSYFNEEQMQTPVLQFFEENLPNLTVLRDDKNGKFEVRWKDEDGNFYMDNADGKDIHASLLHRMSIGYPYCSGAPSFSGYGFSSKAVKTNLLGVDNLQIGDFVLEEPSNSQMFGMHEALRTPGVTSQRLSVGVTPKTLRQPKRGEMLLSVHGSPLGVYEEDNMGAIQESEEG
Disordered Region (DISPRO)
***********************SQLEDKDAELFYREVERQCAAVRAIRDVELEQTLTGLRLLRSYFNEEQMQTPVLQFFEENLPNLTVLRDDKNGKFEVRWKDEDGNFYMDNADGKDIHASLLHRMSIGYPYCSGAPSFSGYGFSSKAVKTNLLGVDNLQIGDFVLEEPSNSQMFGMHEALRTPGVTSQRLSVGVTPKTLRQPKRGEMLLSVHGSPLGVYEEDNMGAIQE****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPPKRRGRPAKKALPSNAEEAKESQLEDKDAELFYREVERQCAAVRAIRDVELEQTLTGLRLLRSYFNEEQMQTPVLQFFEENLPNLTVLRDDKNGKFEVRWKDEDGNFYMDNADGKDIHASLLHRMSIGYPYCSGAPSFSGYGFSSKAVKTNLLGVDNLQIGDFVLEEPSNSQMFGMHEALRTPGVTSQRLSVGVTPKTLRQPKRGEMLLSVHGSPLGVYEEDNMGAIQESEEG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	235
255582524	235	conserved hypothetical protein [Ricinus	0.982	0.982	0.601	2e-74
225438601	236	PREDICTED: uncharacterized protein LOC10	0.978	0.974	0.626	7e-73
449451487	229	PREDICTED: uncharacterized protein LOC10	0.970	0.995	0.584	7e-71
449525696	229	PREDICTED: uncharacterized LOC101215210	0.970	0.995	0.580	6e-70
449487303	239	PREDICTED: uncharacterized LOC101204054	0.957	0.941	0.554	4e-67
449449491	239	PREDICTED: uncharacterized protein LOC10	0.957	0.941	0.55	1e-66
224083775	288	predicted protein [Populus trichocarpa]	0.953	0.777	0.556	3e-64
224093818	233	predicted protein [Populus trichocarpa]	0.953	0.961	0.557	1e-61
18420492	233	uncharacterized protein [Arabidopsis tha	0.970	0.978	0.513	7e-60
297802074	233	hypothetical protein ARALYDRAFT_912442 [	0.970	0.978	0.517	8e-60

>gi|255582524|ref|XP_002532047.1| conserved hypothetical protein [Ricinus communis] gi|223528290|gb|EEF30337.1| conserved hypothetical protein [Ricinus communis]

 Score =  285 bits (728), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 142/236 (60%), Positives = 181/236 (76%), Gaps = 5/236 (2%)

Query: 3   PKRRGRPAKKALPSNAEEAKESQLED--KDAELFYREVERQCAAVRAIRDVELEQTLTGL 60
           P+RR +   K   S+     E Q+++  K   L   EVERQCAA+RAI +VE+E +LT L
Sbjct: 2   PRRRVKRNVKEAASSPGPGVEPQIQEQGKQVPLIDHEVERQCAAIRAIGEVEIEHSLTRL 61

Query: 61  RLLRSYFNEEQMQTPVLQFFEENLPNLTVLRDDKNGKFEVRWKDEDGNFYMDNA-DGKDI 119
           RLLRSYF+EE++QTPVLQFF ENLPNL+++++ + G+FEVRW D+D N  M  A +G+D+
Sbjct: 62  RLLRSYFSEEKLQTPVLQFFRENLPNLSIIKNSETGEFEVRWSDKDDNLSMSQAPNGRDL 121

Query: 120 HASLLHRMSIGYPYCSGAPSFSGYGFSSKAVKTNLLGVDNLQIGDFVLEEPSNSQMFGMH 179
           HASLLH +S+ YP CS  PS SG+  SS AV+T+LLGVD+LQ+ DFV+E P +SQMF   
Sbjct: 122 HASLLHGLSVAYPDCSANPSLSGFELSSNAVRTSLLGVDSLQMKDFVMEGPPDSQMF--V 179

Query: 180 EALRTPGVTSQRLSVGVTPKTLRQPKRGEMLLSVHGSPLGVYEEDNMGAIQESEEG 235
           + L+TPGVTSQR+S+G+TPKTLR PK GEMLLSV GSPLGVY+EDNM AI ESEEG
Sbjct: 180 DGLKTPGVTSQRMSIGMTPKTLRLPKPGEMLLSVRGSPLGVYKEDNMEAIHESEEG 235

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438601|ref|XP_002280684.1| PREDICTED: uncharacterized protein LOC100259371 [Vitis vinifera] gi|296082480|emb|CBI21485.3| unnamed protein product [Vitis vinifera]

 Score =  279 bits (713), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 151/241 (62%), Positives = 183/241 (75%), Gaps = 11/241 (4%)

Query: 1   MPPKRRGRPAKKALPS-----NAEEAKESQLEDKDAELFYREVERQCAAVRAIRDVELEQ 55
           M  +R  +  K++  S     N   AKE QLE +   L  +EVERQ AA+RAIRDVE E 
Sbjct: 1   MAKRRVKKTVKQSAASSQSNINDANAKEPQLEKRKDSLIDQEVERQSAAIRAIRDVESEH 60

Query: 56  TLTGLRLLRSYFNEEQMQTPVLQFFEENLPNLTVLRDDKNGKFEVRWKDEDGNFYMDNAD 115
             T LRLLRSYF +EQ++TPV++FF+ENLPNL V+R+ K G+FEV+WKDE     M NA 
Sbjct: 61  LRTRLRLLRSYFKKEQLRTPVVEFFKENLPNLEVVRNGK-GQFEVQWKDE----AMRNAG 115

Query: 116 GKDIHASLLHRMSIGYPYCSGA-PSFSGYGFSSKAVKTNLLGVDNLQIGDFVLEEPSNSQ 174
           G+++H +LLH+MSI YP CS A PSF G+ FSSKAVKT+LLG DNLQI DFVLEEPS +Q
Sbjct: 116 GENMHVALLHQMSIAYPDCSAAVPSFGGFEFSSKAVKTSLLGADNLQIRDFVLEEPSETQ 175

Query: 175 MFGMHEALRTPGVTSQRLSVGVTPKTLRQPKRGEMLLSVHGSPLGVYEEDNMGAIQESEE 234
           M G+ +A +TPGV+S RLSVG+TPKTLR PK GEMLLSVHGSPLG+Y+EDNM AI ESEE
Sbjct: 176 MMGLQDAFQTPGVSSHRLSVGMTPKTLRLPKHGEMLLSVHGSPLGLYKEDNMEAIHESEE 235

Query: 235 G 235
           G
Sbjct: 236 G 236

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451487|ref|XP_004143493.1| PREDICTED: uncharacterized protein LOC101215210 [Cucumis sativus]

 Score =  272 bits (696), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 138/236 (58%), Positives = 176/236 (74%), Gaps = 8/236 (3%)

Query: 1   MPPKRRGRPAKKALPSNAEEAKESQLEDKDAELFYREVERQCAAVRAIRDVELEQTLTGL 60
           M  ++  +  KK+ PS   EAK+    D+D       VER  AA+RAIRDVE+E+ +T L
Sbjct: 1   MARRKAKKTVKKSSPSPILEAKDEAANDED-------VERHAAAIRAIRDVEIERLITVL 53

Query: 61  RLLRSYFNEEQMQTPVLQFFEENLPNLTVLRDDKNGKFEVRWKDEDGNFYMDNADGKDIH 120
           RLLRSYFN+EQ+QTP+LQFFEE LP L++ R  + G+ EV+WKD +     + ADG DIH
Sbjct: 54  RLLRSYFNKEQLQTPLLQFFEEKLPRLSISRTGEQGEIEVQWKDTEDELRTNPADGIDIH 113

Query: 121 ASLLHRMSIGYPYCS-GAPSFSGYGFSSKAVKTNLLGVDNLQIGDFVLEEPSNSQMFGMH 179
           ASLLHR+SI YP CS G  SF+G+ FSSK+VKTN   V+NLQI +FVLEEPS++ + GM 
Sbjct: 114 ASLLHRLSIAYPNCSAGMRSFNGFEFSSKSVKTNPFIVENLQIPNFVLEEPSDNLVLGMP 173

Query: 180 EALRTPGVTSQRLSVGVTPKTLRQPKRGEMLLSVHGSPLGVYEEDNMGAIQESEEG 235
           +  +TPGV++QRLS+G+TPKT R PK GEML+S+HGSPLGVY+EDNM AI ESEEG
Sbjct: 174 DIHQTPGVSNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG 229

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449525696|ref|XP_004169852.1| PREDICTED: uncharacterized LOC101215210 [Cucumis sativus]

 Score =  269 bits (688), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 137/236 (58%), Positives = 175/236 (74%), Gaps = 8/236 (3%)

Query: 1   MPPKRRGRPAKKALPSNAEEAKESQLEDKDAELFYREVERQCAAVRAIRDVELEQTLTGL 60
           M  ++  +  KK+ PS   EAK+    D+D       VER  AA+RAIRDVE+ + +T L
Sbjct: 1   MARRKAKKTVKKSSPSPILEAKDEAANDED-------VERHAAAIRAIRDVEIGRLITEL 53

Query: 61  RLLRSYFNEEQMQTPVLQFFEENLPNLTVLRDDKNGKFEVRWKDEDGNFYMDNADGKDIH 120
           RLLRSYFN+EQ+QTP+LQFFEE LP L++ R  + G+ EV+WKD +     + ADG DIH
Sbjct: 54  RLLRSYFNKEQLQTPLLQFFEEKLPRLSISRTGEQGEIEVQWKDTEDELRTNPADGIDIH 113

Query: 121 ASLLHRMSIGYPYCS-GAPSFSGYGFSSKAVKTNLLGVDNLQIGDFVLEEPSNSQMFGMH 179
           ASLLHR+SI YP CS G  SF+G+ FSSK+VKTN   V+NLQI +FVLEEPS++ + GM 
Sbjct: 114 ASLLHRLSIAYPNCSAGMRSFNGFEFSSKSVKTNPFIVENLQIPNFVLEEPSDNLVLGMP 173

Query: 180 EALRTPGVTSQRLSVGVTPKTLRQPKRGEMLLSVHGSPLGVYEEDNMGAIQESEEG 235
           +  +TPGV++QRLS+G+TPKT R PK GEML+S+HGSPLGVY+EDNM AI ESEEG
Sbjct: 174 DIHQTPGVSNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG 229

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449487303|ref|XP_004157560.1| PREDICTED: uncharacterized LOC101204054 [Cucumis sativus]

 Score =  260 bits (664), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 133/240 (55%), Positives = 173/240 (72%), Gaps = 15/240 (6%)

Query: 1   MPPKRRGRPAKKALPSNAEEAKESQLE----DKDAELFYREVERQCAAVRAIRDVELEQT 56
           M  ++  +  KK+ PS+  +AK+  +     D D      +VER  AA+RAIRDVE+E+ 
Sbjct: 1   MARRKAKKTVKKSSPSSGRDAKDEAVNKLKTDSD-----EDVERHAAAIRAIRDVEIERL 55

Query: 57  LTGLRLLRSYFNEEQMQTPVLQFFEENLPNLTVLRDDKNGKFEVRWKDEDGNFYMDNADG 116
           +T LRLLRSYFN+EQ+QTP+LQFFEE LP+L++    K G+ EVRWKD +   + + ADG
Sbjct: 56  ITVLRLLRSYFNKEQLQTPLLQFFEEKLPSLSISIRGKQGEIEVRWKDTEDELHTNPADG 115

Query: 117 KDIHASLLHRMSIGYPYCS-GAPSFSGYGFSSKAVKTNLLGVDNLQIGDFVLEEPSNSQM 175
            DIHASLLHR+S  YPYCS G  SF+G+ FSSK+VKTN    +NLQI +FVLEEPS++  
Sbjct: 116 VDIHASLLHRLSTAYPYCSAGMRSFNGFEFSSKSVKTNPFNAENLQIPNFVLEEPSDNMT 175

Query: 176 FGMHEALRTPGV-----TSQRLSVGVTPKTLRQPKRGEMLLSVHGSPLGVYEEDNMGAIQ 230
            GM + L+TPGV     ++QRLS+G+TPKT R PK GEML+S+HGSPLGVY+EDNM AI 
Sbjct: 176 LGMPDILQTPGVRIFMISNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH 235

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449491|ref|XP_004142498.1| PREDICTED: uncharacterized protein LOC101204054 [Cucumis sativus]

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 132/240 (55%), Positives = 172/240 (71%), Gaps = 15/240 (6%)

Query: 1   MPPKRRGRPAKKALPSNAEEAKESQLE----DKDAELFYREVERQCAAVRAIRDVELEQT 56
           M  ++  +  KK+ PS+  +AK+  +     D D      +VER  AA+RAIRDVE+E+ 
Sbjct: 1   MARRKAKKTVKKSSPSSGRDAKDEAVNKLKTDSD-----EDVERHAAAIRAIRDVEIERL 55

Query: 57  LTGLRLLRSYFNEEQMQTPVLQFFEENLPNLTVLRDDKNGKFEVRWKDEDGNFYMDNADG 116
           +T LRLLRSYFN+EQ+QTP+LQFFEE LP+L++    K G+ EVRWKD +   + + ADG
Sbjct: 56  ITVLRLLRSYFNKEQLQTPLLQFFEEKLPSLSISIRGKQGEIEVRWKDTEDELHTNPADG 115

Query: 117 KDIHASLLHRMSIGYPYCS-GAPSFSGYGFSSKAVKTNLLGVDNLQIGDFVLEEPSNSQM 175
            DIHASLLHR+S  YPYCS G  SF+G+ FSSK+VKTN    +NLQI +FVLEEPS+   
Sbjct: 116 VDIHASLLHRLSTAYPYCSAGMRSFNGFEFSSKSVKTNPFNAENLQIPNFVLEEPSDDMT 175

Query: 176 FGMHEALRTPGV-----TSQRLSVGVTPKTLRQPKRGEMLLSVHGSPLGVYEEDNMGAIQ 230
            GM + ++TPGV     ++QRLS+G+TPKT R PK GEML+S+HGSPLGVY+EDNM AI 
Sbjct: 176 LGMPDIVQTPGVRIFMISNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH 235

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224083775|ref|XP_002307120.1| predicted protein [Populus trichocarpa] gi|222856569|gb|EEE94116.1| predicted protein [Populus trichocarpa]

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 128/230 (55%), Positives = 166/230 (72%), Gaps = 6/230 (2%)

Query: 1   MPPKRRGRPAKKALPSNAEEAKESQLEDKDAELFYREVERQCAAVRAIRDVELEQTLTGL 60
           M  +R  +  K++ PSN E   + + E K   L  +EVERQ  A+R++RDV +E  LT L
Sbjct: 1   MARRRVKKTVKESAPSNQENQPQIE-EPKHFPLIDQEVERQIVAIRSMRDVGIEHLLTEL 59

Query: 61  RLLRSYFNEEQMQTPVLQFFEENLPNLTVLRDDKNGKFEVRWKDEDGNFYMDNADGKDIH 120
           RLLRSYF++EQ+ TP LQFF+ENLPNL++ R+++NG+F V+W D         +DG +I+
Sbjct: 60  RLLRSYFSKEQLNTPALQFFKENLPNLSIERNEENGEFLVKWNDNVDEL----SDGANIN 115

Query: 121 ASLLHRMSIGYPYCSGAPSFSGYGFSSKAVKTNLLGV-DNLQIGDFVLEEPSNSQMFGMH 179
           ASLL R+S+ YP CS   S   +G SS AVKT++ G  DNLQ+ D VLE  S+SQM GMH
Sbjct: 116 ASLLRRLSLAYPSCSANLSVGRFGLSSNAVKTSIFGAADNLQMTDIVLEGQSDSQMLGMH 175

Query: 180 EALRTPGVTSQRLSVGVTPKTLRQPKRGEMLLSVHGSPLGVYEEDNMGAI 229
           + LRTPGVTSQRLS+G+TPKT R PKRGE+LLSV GSPLGV++EDNM AI
Sbjct: 176 DGLRTPGVTSQRLSIGMTPKTQRLPKRGEILLSVRGSPLGVFKEDNMEAI 225

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224093818|ref|XP_002310004.1| predicted protein [Populus trichocarpa] gi|222852907|gb|EEE90454.1| predicted protein [Populus trichocarpa]

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 131/235 (55%), Positives = 172/235 (73%), Gaps = 11/235 (4%)

Query: 6   RGRPAKKALPSNAEEAKESQLEDKDAE---LFYREVERQCAAVRAIRDVELEQTLTGLRL 62
           RGR  KK +  +A   +E+Q + ++ E   L  + VERQ AA+RA+RDV +E  LT LRL
Sbjct: 3   RGR-VKKTVKESASSKQENQPQVEEPEQFPLIDQAVERQIAAIRAMRDVGIEHLLTELRL 61

Query: 63  LRSYFNEEQMQTPVLQFFEENLPNLTVLRDDKNGKFEVRWKDEDGNFYMDNADGKDIHAS 122
           LRSYF +EQ++TPVLQFF+ENLPNL++ R+++NG+F V++ D    F    +DG +I+AS
Sbjct: 62  LRSYFTKEQLKTPVLQFFKENLPNLSIERNEENGEFLVKFNDNVDGF----SDGGNINAS 117

Query: 123 LLHRMSIGYPYCSGAPSFSGYGFSSKAVKTNLLG-VDNLQIGDFVLEEPSNSQMFGMH-- 179
           LL R+S+ YP CS       +G SS AVKT++ G  D+LQ+ DFVLE  S+ QM GMH  
Sbjct: 118 LLRRLSMAYPSCSANLPVGHFGLSSDAVKTSIFGAADHLQMPDFVLEGQSDFQMLGMHDG 177

Query: 180 EALRTPGVTSQRLSVGVTPKTLRQPKRGEMLLSVHGSPLGVYEEDNMGAIQESEE 234
           + L+TPGV+SQRLS+G+TPKTLR PK GEMLLSV GSPLGVY+EDNM AI ES+E
Sbjct: 178 DGLQTPGVSSQRLSIGMTPKTLRLPKPGEMLLSVRGSPLGVYKEDNMEAIHESDE 232

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18420492|ref|NP_568063.1| uncharacterized protein [Arabidopsis thaliana] gi|332661696|gb|AEE87096.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  236 bits (601), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 118/230 (51%), Positives = 159/230 (69%), Gaps = 2/230 (0%)

Query: 3   PKRRGRPAKKALPSNAEEAKESQLEDKDAELFYREVERQCAAVRAIRDVELEQTLTGLRL 62
           PKR+ +   K    +  + K  ++E+K  +    EVERQ AA+RAIRDVE+EQ LT LRL
Sbjct: 2   PKRKAKECVKLTEEDRNDEKRIRIEEKKEDFVDEEVERQIAAIRAIRDVEIEQMLTALRL 61

Query: 63  LRSYFNEEQMQTPVLQFFEENLPNLTVLRDDKNGKFEVRWKDEDGNFYMDNADGKDIHAS 122
           LRSYF EEQ+ TPVL FF+ENLP+L++ R+++ G+ E++W+DE+G+ +  N +G D++ S
Sbjct: 62  LRSYFTEEQLHTPVLDFFKENLPDLSISRNEETGEIELKWRDENGDSFAGNENGVDMNYS 121

Query: 123 LLHRMSIGYPYCSGAPSFSGYGFSSKAVKTNLLGVDNLQIGDFVLEEPSNSQMFGMHEAL 182
           +L R+S+ +       S  GY      VK NLLG DN Q+ + V +  S +QM   H+A 
Sbjct: 122 ILKRLSMRFTDLYSRSSLGGYDLPDN-VKANLLGTDNPQLDNLVFQGTSENQMLPGHDAF 180

Query: 183 RTPGVTSQRLSVGVTPKTLRQPKRGEMLLSVHGSPLGVYEED-NMGAIQE 231
           +TPGV  QRLS G+TPKTLR PK GEM+LSVHGSPLGVY+ED NMGAI E
Sbjct: 181 QTPGVNGQRLSFGMTPKTLRLPKAGEMMLSVHGSPLGVYKEDHNMGAINE 230

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297802074|ref|XP_002868921.1| hypothetical protein ARALYDRAFT_912442 [Arabidopsis lyrata subsp. lyrata] gi|297314757|gb|EFH45180.1| hypothetical protein ARALYDRAFT_912442 [Arabidopsis lyrata subsp. lyrata]

 Score =  236 bits (601), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 119/230 (51%), Positives = 159/230 (69%), Gaps = 2/230 (0%)

Query: 3   PKRRGRPAKKALPSNAEEAKESQLEDKDAELFYREVERQCAAVRAIRDVELEQTLTGLRL 62
           PKR+ +   K    +  + K  + E+K  +    EVERQ AA+RAIRDVE+EQTLT LRL
Sbjct: 2   PKRKAKECVKLTEEDKNDDKRIRREEKKEDFVDEEVERQIAAIRAIRDVEIEQTLTALRL 61

Query: 63  LRSYFNEEQMQTPVLQFFEENLPNLTVLRDDKNGKFEVRWKDEDGNFYMDNADGKDIHAS 122
           LRS F EEQ+ TPVL+FF+ENLP+L++ R+++ G+ E++WKDE+G+ +  NA+G D++ S
Sbjct: 62  LRSNFTEEQLDTPVLEFFKENLPDLSISRNEETGEIELKWKDENGDSFAGNANGVDMNYS 121

Query: 123 LLHRMSIGYPYCSGAPSFSGYGFSSKAVKTNLLGVDNLQIGDFVLEEPSNSQMFGMHEAL 182
           +L R+S+ +P      S  GY      VK NLLG DN  + + V +  S +QM   H+A 
Sbjct: 122 ILKRLSMRFPDLYSRSSLGGYDLPDN-VKANLLGTDNPLLDNLVFQGTSENQMLASHDAF 180

Query: 183 RTPGVTSQRLSVGVTPKTLRQPKRGEMLLSVHGSPLGVYEED-NMGAIQE 231
           +TPGV  QRLS G+TPKT R PK GEM+LSVHGSPLGVY+ED NMGAI E
Sbjct: 181 QTPGVNGQRLSFGMTPKTRRLPKPGEMMLSVHGSPLGVYKEDHNMGAINE 230

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	235
TAIR|locus:2135202	233	AT4G39630 "AT4G39630" [Arabido	0.970	0.978	0.513	3.2e-58

TAIR|locus:2135202 AT4G39630 "AT4G39630" [Arabidopsis thaliana (taxid:3702)]

 Score = 598 (215.6 bits), Expect = 3.2e-58, P = 3.2e-58
 Identities = 118/230 (51%), Positives = 159/230 (69%)

Query:     3 PKRRGRPAKKALPSNAEEAKESQLEDKDAELFYREVERQCAAVRAIRDVELEQTLTGLRL 62
             PKR+ +   K    +  + K  ++E+K  +    EVERQ AA+RAIRDVE+EQ LT LRL
Sbjct:     2 PKRKAKECVKLTEEDRNDEKRIRIEEKKEDFVDEEVERQIAAIRAIRDVEIEQMLTALRL 61

Query:    63 LRSYFNEEQMQTPVLQFFEENLPNLTVLRDDKNGKFEVRWKDEDGNFYMDNADGKDIHAS 122
             LRSYF EEQ+ TPVL FF+ENLP+L++ R+++ G+ E++W+DE+G+ +  N +G D++ S
Sbjct:    62 LRSYFTEEQLHTPVLDFFKENLPDLSISRNEETGEIELKWRDENGDSFAGNENGVDMNYS 121

Query:   123 LLHRMSIGYPYCSGAPSFSGYGFSSKAVKTNLLGVDNLQIGDFVLEEPSNSQMFGMHEAL 182
             +L R+S+ +       S  GY      VK NLLG DN Q+ + V +  S +QM   H+A 
Sbjct:   122 ILKRLSMRFTDLYSRSSLGGYDLPDN-VKANLLGTDNPQLDNLVFQGTSENQMLPGHDAF 180

Query:   183 RTPGVTSQRLSVGVTPKTLRQPKRGEMLLSVHGSPLGVYEED-NMGAIQE 231
             +TPGV  QRLS G+TPKTLR PK GEM+LSVHGSPLGVY+ED NMGAI E
Sbjct:   181 QTPGVNGQRLSFGMTPKTLRLPKAGEMMLSVHGSPLGVYKEDHNMGAINE 230


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.133   0.382    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      235       235   0.00088  113 3  11 23  0.47    33
                                                     32  0.43    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  593 (63 KB)
  Total size of DFA:  174 KB (2102 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  24.29u 0.10s 24.39t   Elapsed:  00:00:01
  Total cpu time:  24.29u 0.10s 24.39t   Elapsed:  00:00:01
  Start:  Sat May 11 01:52:45 2013   End:  Sat May 11 01:52:46 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006275 "regulation of DNA replication" evidence=RCA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009957 "epidermal cell fate specification" evidence=RCA

GO:0010389 "regulation of G2/M transition of mitotic cell cycle" evidence=RCA

GO:0016458 "gene silencing" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00019418001 SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (269 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	235
PF10512	116	Borealin: Cell division cycle-associated protein 8	95.99
PF10444	59	Nbl1_Borealin_N: Nbl1 / Borealin N terminal; Inter	85.64

>PF10512 Borealin: Cell division cycle-associated protein 8 ; InterPro: IPR018867 The chromosomal passenger complex of Aurora B kinase, INCENP, and Survivin has essential regulatory roles at centromeres and the central spindle in mitosis

Probab=95.99  E-value=0.0019  Score=52.39  Aligned_cols=25  Identities=48%  Similarity=0.751  Sum_probs=0.4

Q ss_pred             cccCCCCCceeEEee-CCCccccccc
Q 026687          200 TLRQPKRGEMLLSVH-GSPLGVYEED  224 (235)
Q Consensus       200 T~RlPK~GEMLLSVh-GSPLGvYkEd  224 (235)
                      -+|.|+.||+++|.- ||||.++.++
T Consensus        40 ~lR~pr~gE~v~S~~~GSPl~~~~~~   65 (116)
T PF10512_consen   40 FLRWPRAGERVYSISNGSPLAADNED   65 (116)
T ss_dssp             -------------------------S
T ss_pred             eeecCCCCCeEEeccCCCccccCCCC
Confidence            589999999999999 9999887743

Cell division cycle-associated protein 8, also known as Borealin, is also a member of the complex. Approximately half of Aurora B in mitotic cells is complexed with INCENP, Borealin, and Survivin. Depletion of Borealin by RNA interference delays mitotic progression and results in kinetochore-spindle mis-attachments and an increase in bipolar spindles associated with ectopic asters []. ; PDB: 2KDD_A.

>PF10444 Nbl1_Borealin_N: Nbl1 / Borealin N terminal; InterPro: IPR018851 This entry represents the N-terminal domain of borealin, and is also found in the N-terminal-Borealin-like (NBL; YHR199C-A) protein from Saccharomyces cerevisiae (Baker's yeast)

Probab=85.64  E-value=3.5  Score=29.38  Aligned_cols=51  Identities=20%  Similarity=0.159  Sum_probs=44.0

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhchhhhcchHHHHHHHh
Q 026687           33 LFYREVERQCAAVRAIRDVELEQTLTGLRLLRSYFNEEQMQTPVLQFFEEN   83 (235)
Q Consensus        33 ~~d~EvERqiaAIrAIrDvEiE~~Lt~LRLlRSyfSkEQL~tpvLQfFkEn   83 (235)
                      =.|.||+.||..+||--+.-+..+..++..-=.++.+.--.++..+|+..+
T Consensus         9 ~fd~Ev~~r~~~lr~~~~~~~~~~~~~~~~~l~riP~~vR~m~~~d~~~~y   59 (59)
T PF10444_consen    9 NFDLEVEERIRRLRAQYENLLQSLRNRLEMELLRIPKAVRKMTMRDFLEKY   59 (59)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHTSBHHHHHH--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHhCCHHHHhhcC
Confidence            358899999999999999999999999998888899999999999998753

NBL is a subunit of the conserved chromosomal passenger complex (CPC; Ipl1p-Sli15p-Bir1p-Nbl1p), which regulates mitotic chromosome segregation. It is not required for the kinase activity of the complex and it mediates the interaction of Sli15p and Bir1p [].; PDB: 2RAW_B 2RAX_Y 2QFA_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	235
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 4e-04
 Identities = 27/195 (13%), Positives = 50/195 (25%), Gaps = 66/195 (33%)

Query: 17  NAEEAKESQLEDKDAELFYREVERQCAAVRAIRDVEL-EQTLTGLRLLRS---------- 65
           +A       L+     L   EV+         R  +L  + LT      S          
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341

Query: 66  -------YFNEEQMQTPVLQFFEENL-PN--------LTVLRDDKN---GKFEVRWKDED 106
                  + N +++ T +++     L P         L+V     +       + W D  
Sbjct: 342 ATWDNWKHVNCDKLTT-IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI 400

Query: 107 GNFYMD-----------NADGKD---------------------IHASLLHRMSIGYPYC 134
            +  M                K+                     +H S++   +I   + 
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFD 460

Query: 135 S---GAPSFSGYGFS 146
           S     P    Y +S
Sbjct: 461 SDDLIPPYLDQYFYS 475

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00