Citrus Sinensis ID: 026705

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230----
Protein Sequence
MERIAITCLQSFLKALNLIMGIVGISMILYGIWMIRVWQRDMEGQSFDDFCSINPWFICSFIGIGVTFCLITCLGHIAAASANGFCLSFYMLITCLLLLLETAIAADIQLNSEWEKDLPDDPTGRFHDFKKFVKSNFDIFKWIGIWIISAQVSSALLAMALRALGSNQGYSYDNDGEFLSDRLPLINHQVQAPAYVIGDPPFAAKYDPVKPTAYAWNVKIHFNPSQLFLASFLS
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHccccccccccccccccccccccccccccccEEEEcccccHHHHHHHcc
Coil and Loop (DISEMBL)
MERIAITCLQSFLKALNLIMGIVGISMILYGIWMIRVWQrdmegqsfddfcsinpwficsFIGIGVTFCLITCLGHIAAASANGFCLSFYMLITCLLLLLETAIAADIQLNsewekdlpddptgrfhdfkKFVKSNFDIFKWIGIWIISAQVSSALLAMALRALgsnqgysydndgeflsdrlplinhqvqapayvigdppfaakydpvkptayawnvkihfnpsqLFLASFLS
Flexible Loop (DISEMBL)
MERIAITCLQSFLKALNLIMGIVGISMILYGIWMIRVWQRDMEGQSFDDFCSINPWFICSFIGIGVTFCLITCLGHIAAASANGFCLSFYMLITCLLLLLETAIAADIQLNSEWEKDLPDDPTGRFHDFKKFVKSNFDIFKWIGIWIISAQVSSALLAMALRALGSNQGYSYDNDGEFLSDRLPLINHQVQAPAYVIGDPPFAAKYDPVKPTAYAWNVKIHFNPSQLFLASFLS
Low Complexity Region (SEG)
MERIAITCLQSFLKALNLIMGIVGISMILYGIWMIRVWQRDMEGQSFDDFCSINPWFICSFIGIGVTFCLITCLGHIAAASANGFCLSFYMLITClllllETAIAADIQLNSEWEKDLPDDPTGRFHDFKKFVKSNFDIFKWIGIWIISAQVSSallamalralGSNQGYSYDNDGEFLSDRLPLINHQVQAPAYVIGDPPFAAKYDPVKPTAYAWNVKIHFNPSQLFLASFLS
Disordered region (IsUnstruct)
***IAITCLQSFLKALNLIMGIVGISMILYGIWMIRVWQRDMEGQSFDDFCSINPWFICSFIGIGVTFCLITCLGHIAAASANGFCLSFYMLITCLLLLLETAIAADIQLNSEWEKDLPDDPTGRFHDFKKFVKSNFDIFKWIGIWIISAQVSSALLAMALRALGSNQGYSYDNDGEFLSDRLPLINHQVQAPAYVIGDPPFAAKYDPVKPTAYAWNVKIHFNPSQLFLAS***
Disordered Region (DISOPRED)
****AITCLQSFLKALNLIMGIVGISMILYGIWMIRVWQRDMEGQSFDDFCSINPWFICSFIGIGVTFCLITCLGHIAAASANGFCLSFYMLITCLLLLLETAIAADIQLNSEWEKDLPDDPTGRFHDFKKFVKSNFDIFKWIGIWIISAQVSSALLAMALRALGSNQGYSYDNDGEFLSDRLP*******************************WNVKIHFNPSQLFLASFLS
Disordered Region (DISEMBL)
MERIAITCLQSFLKALNLIMGIVGISMILYGIWMIRVWQRDMEGQSFDDFCSINPWFICSFIGIGVTFCLITCLGHIAAASANGFCLSFYMLITCLLLLLETAIAADIQLNSEWEKDLPDDPTGRFHDFKKFVKSNFDIFKWIGIWIISAQVSSALLAMALRALGSNQGYSYDNDGEFLSDRLPLINHQVQAPAYVIGDPPFAAKYDPVKPTAYAWNVKIHFNPSQLFLASFLS
Disordered Region (DISPRO)
*ERIAITCLQSFLKALNLIMGIVGISMILYGIWMIRVWQRDMEGQSFDDFCSINPWFICSFIGIGVTFCLITCLGHIAAASANGFCLSFYMLITCLLLLLETAIAADIQLNSEWEKDLPDDPTGRFHDFKKFVKSNFDIFKWIGIWIISAQVSSALLAMALRALGSNQGYSYDNDGEFLSDRLPLINHQVQAPAYVIGDPPF**********AYAWNVKIHFNPSQLFLASFLS
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MERIAITCLQSFLKALNLIMGIVGISMILYGIWMIRVWQRDMEGQSFDDFCSINPWFICSFIGIGVTFCLITCLGHIAAASANGFCLSFYMLITCLLLLLETAIAADIQLNSEWEKDLPDDPTGRFHDFKKFVKSNFDIFKWIGIWIISAQVSSALLAMALRALGSNQGYSYDNDGEFLSDRLPLINHQVQAPAYVIGDPPFAAKYDPVKPTAYAWNVKIHFNPSQLFLASFLS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	234	2.2.26 [Sep-21-2011]
Q940P5	221	Tetraspanin-19 OS=Arabido	yes	no	0.910	0.963	0.463	2e-53
Q93XY5	270	Tetraspanin-18 OS=Arabido	no	no	0.670	0.581	0.356	2e-27
Q9SVU4	281	Tetraspanin-20 OS=Arabido	no	no	0.529	0.441	0.427	3e-23

>sp|Q940P5|TET19_ARATH Tetraspanin-19 OS=Arabidopsis thaliana GN=At2g20740 PE=2 SV=1

 Score =  209 bits (531), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 102/220 (46%), Positives = 138/220 (62%), Gaps = 7/220 (3%)

Query: 1   MERIAITCLQSFLKALNLIMGIVGISMILYGIWMIRVWQRDMEGQSFDDFCSINPWFICS 60
           M RI  +CLQS LK +N ++G+VGI+MILY +W+IR WQ  M    F D     PWFI S
Sbjct: 1   MVRIVRSCLQSMLKLVNSLIGMVGIAMILYAVWLIRQWQEQMGNLPFADSDHPVPWFIYS 60

Query: 61  FIGIGVTFCLITCLGHIAAASANGFCLSFYMLITCLLLLLETAIAADIQLNSEWEKDLPD 120
           F+G+G   C++TC GHIAA + NG CL  YM    LL ++E  + ADI LN +W+KD P+
Sbjct: 61  FLGLGAILCVVTCAGHIAAETVNGCCLYLYMGFIVLLTMVEGGVVADIFLNRDWKKDFPE 120

Query: 121 DPTGRFHDFKKFVKSNFDIFKWIGIWIISAQVSSALLAMALRALGSNQGYSYDNDGEFLS 180
           DP+G FH F KF++SNF I KWIG+ I+  Q  S L+AM L+ALG +    YD+D E+  
Sbjct: 121 DPSGAFHQFSKFIESNFKICKWIGLSIVCVQGLSVLIAMLLKALGPHPHRHYDSDDEYNV 180

Query: 181 DRLPLINHQVQAPAYVIGDPPFAAKYDPVKPTAYAWNVKI 220
             + L+    Q P YV+G+P + AK         AW V++
Sbjct: 181 STVALLQDARQPPPYVVGEPMYGAK-------PGAWTVRL 213

May be involved in the regulation of cell differentiation.
Arabidopsis thaliana (taxid: 3702)

>sp|Q93XY5|TET18_ARATH Tetraspanin-18 OS=Arabidopsis thaliana GN=At2g20230 PE=2 SV=1

 Score =  122 bits (307), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 71/199 (35%), Positives = 101/199 (50%), Gaps = 42/199 (21%)

Query: 11  SFLKALNLIMGIVGISMILYGIWMIRVWQRDME-----------------------GQSF 47
           S LK LN +   +G+S+I+Y IWM+  + R +                            
Sbjct: 12  STLKILNFVQAFIGVSIIIYSIWMLHEYSRHLPVDPPPSASSSSGTEIATSVSEPLKNPI 71

Query: 48  DDFCSI-------------------NPWFICSFIGIGVTFCLITCLGHIAAASANGFCLS 88
           D   SI                    PWFI SF+ +G+  C++T +G IAA + NG CL 
Sbjct: 72  DFVASIILGSNGGDHGFNLRSLDLPAPWFIYSFMAVGILVCIVTFIGFIAAEAINGCCLC 131

Query: 89  FYMLITCLLLLLETAIAADIQLNSEWEKDLPDDPTGRFHDFKKFVKSNFDIFKWIGIWII 148
           FY ++  LL+LLE A+ A I ++  WEKDLP DPTG     + F++ N DI KW+GI ++
Sbjct: 132 FYSILKTLLILLEAALVAYIAIDRHWEKDLPYDPTGELSSLRAFIEENIDICKWVGIAVV 191

Query: 149 SAQVSSALLAMALRALGSN 167
           + Q+ S LLAM LRA+ S 
Sbjct: 192 AVQLLSLLLAMVLRAMVST 210

May be involved in the regulation of cell differentiation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SVU4|TET20_ARATH Tetraspanin-20 OS=Arabidopsis thaliana GN=At4g28770 PE=2 SV=1

 Score =  108 bits (270), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 53/124 (42%), Positives = 82/124 (66%)

Query: 55  PWFICSFIGIGVTFCLITCLGHIAAASANGFCLSFYMLITCLLLLLETAIAADIQLNSEW 114
           PWFI  F+ IG+  C++T +G IAA + NG CL FY ++  LL+++E A+   I ++  W
Sbjct: 109 PWFIYCFMAIGILVCIVTIIGFIAAEAINGCCLCFYSILKTLLIIIEAALVGFIVIDRHW 168

Query: 115 EKDLPDDPTGRFHDFKKFVKSNFDIFKWIGIWIISAQVSSALLAMALRALGSNQGYSYDN 174
           EKDLP DPTG  +  + F++ N DI KW+GI +++ Q+ S LLA+ LRA+ S +    D+
Sbjct: 169 EKDLPYDPTGELNSLRAFIEENIDICKWVGIVVVAIQLLSLLLALVLRAMVSPRQSELDD 228

Query: 175 DGEF 178
           + +F
Sbjct: 229 EDDF 232

May be involved in the regulation of cell differentiation.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	234
224125482	231	predicted protein [Populus trichocarpa]	0.923	0.935	0.627	4e-71
224077130	214	predicted protein [Populus trichocarpa]	0.914	1.0	0.638	3e-63
255553795	221	conserved hypothetical protein [Ricinus	0.927	0.981	0.484	1e-56
225446928	212	PREDICTED: uncharacterized protein LOC10	0.854	0.943	0.516	2e-55
297832674	219	hypothetical protein ARALYDRAFT_480909 [	0.914	0.977	0.470	3e-52
147856838	276	hypothetical protein VITISV_004797 [Viti	0.914	0.775	0.439	4e-52
359497089	219	PREDICTED: uncharacterized protein LOC10	0.850	0.908	0.565	8e-52
30681117	221	Tetraspanin family protein [Arabidopsis	0.910	0.963	0.463	8e-52
296084735	211	unnamed protein product [Vitis vinifera]	0.893	0.990	0.545	9e-52
351726534	212	uncharacterized protein LOC100527459 [Gl	0.867	0.957	0.480	3e-51

>gi|224125482|ref|XP_002329816.1| predicted protein [Populus trichocarpa] gi|222870878|gb|EEF08009.1| predicted protein [Populus trichocarpa]

 Score =  273 bits (699), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 140/223 (62%), Positives = 166/223 (74%), Gaps = 7/223 (3%)

Query: 1   MERIAITCLQSFLKALNLIMGIVGISMILYGIWMIRVWQRDMEGQSFDDFCSINPWFICS 60
           M R+A TCL+S LK +N  +G+VGI+MILYG WM+RV QRDME  SFDDF S   WFI +
Sbjct: 1   MARVARTCLRSILKIVNSTLGLVGIAMILYGFWMLRVLQRDMESPSFDDFDSTALWFIYT 60

Query: 61  FIGIGVTFCLITCLGHIAAASANGFCLSFYMLITCLLLLLETAIAADIQLNSEWEKDLPD 120
           F+ IGV  CLITCLGHI+A S+NG CLS YM+I  LLLLLET +AADI LNS+WEKDLP+
Sbjct: 61  FLSIGVALCLITCLGHISADSSNGICLSCYMVIIFLLLLLETLVAADILLNSDWEKDLPE 120

Query: 121 DPTGRFHDFKKFVKSNFDIFKWIGIWIISAQVSSALLAMALRALGSNQGYSYDNDGEFLS 180
           DPTGRFHDF++FV+SNFD FKWI ++II  Q  S LLAM LRALG N G +YD D E+ S
Sbjct: 121 DPTGRFHDFREFVESNFDFFKWIAMFIILVQGFSILLAMTLRALGPNNGSNYDIDEEYTS 180

Query: 181 DRLPLINHQVQAPAYVIGDPPFAAKYDPVKPTAYAWNVKIHFN 223
             LPLIN   Q P YV+G+P F+ K D       AWNV+IHF 
Sbjct: 181 ATLPLINPHSQTPPYVVGEPRFSIKND-------AWNVRIHFQ 216

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224077130|ref|XP_002305145.1| predicted protein [Populus trichocarpa] gi|222848109|gb|EEE85656.1| predicted protein [Populus trichocarpa]

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 141/221 (63%), Positives = 167/221 (75%), Gaps = 7/221 (3%)

Query: 1   MERIAITCLQSFLKALNLIMGIVGISMILYGIWMIRVWQRDMEGQSFDDFCSINPWFICS 60
           M  IA TCLQS LK +N  +G+VGI+M+LYG+WM RVWQRDM+  SFDDF S  PWFI +
Sbjct: 1   MAGIARTCLQSILKFVNSTLGLVGIAMVLYGLWMSRVWQRDMQDSSFDDFDSSAPWFIYT 60

Query: 61  FIGIGVTFCLITCLGHIAAASANGFCLSFYMLITCLLLLLETAIAADIQLNSEWEKDLPD 120
           F+ IGVT CLITCLGHI+A  +NGF LS YM I  +LLLLETA+AADI LNS+WEKDLP+
Sbjct: 61  FLSIGVTLCLITCLGHISADCSNGFFLSCYMEIIFVLLLLETALAADILLNSDWEKDLPE 120

Query: 121 DPTGRFHDFKKFVKSNFDIFKWIGIWIISAQVSSALLAMALRALGSNQGYSYDNDGEFLS 180
           DPTGRFHDF++FV+SNFD FKWIG++II AQ  S LLAMALRALG +   +YD   E   
Sbjct: 121 DPTGRFHDFREFVESNFDFFKWIGMFIILAQGFSMLLAMALRALGPSNESNYDIYDEHPP 180

Query: 181 DRLPLINHQVQAPAYVIGDPPFAAKYDPVKPTAYAWNVKIH 221
            RLPLINH +Q P YV+G+P F  K D       AWNV+IH
Sbjct: 181 ARLPLINHHLQQPPYVVGEPRFPMKND-------AWNVRIH 214

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553795|ref|XP_002517938.1| conserved hypothetical protein [Ricinus communis] gi|223542920|gb|EEF44456.1| conserved hypothetical protein [Ricinus communis]

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 110/227 (48%), Positives = 156/227 (68%), Gaps = 10/227 (4%)

Query: 1   MERIAITCLQSFLKALNLIMGIVGISMILYGIWMIRVWQRDMEGQSF-DDFCSINPWFIC 59
           M R+  +C+QS LK LN ++G+VG+ MILY +W+IRVWQR+M    F DD  +  PWFI 
Sbjct: 1   MVRLMRSCMQSILKLLNSVIGMVGLGMILYAVWLIRVWQREMGDFPFEDDSDNPAPWFIY 60

Query: 60  SFIGIGVTFCLITCLGHIAAASANGFCLSFYMLITCLLLLLETAIAADIQLNSEWEKDLP 119
           +F+G+GVT C+ITC+GH+AA +ANG CL  YML   +L +LE  ++AD+ LN +WEKD P
Sbjct: 61  TFLGLGVTLCVITCVGHVAAETANGCCLYLYMLFVFVLFMLEAGVSADVFLNRDWEKDFP 120

Query: 120 DDPTGRFHDFKKFVKSNFDIFKWIGIWIISAQVSSALLAMALRALGSNQGYSYDNDGEFL 179
            DPTG F+ FK F++SNF+I KW+G+ I+S Q  S LLA+ L+ALG +Q    D+D EF 
Sbjct: 121 KDPTGSFNQFKDFIRSNFEICKWMGLSIVSVQGLSFLLALILKALGPHQ--YCDSDDEFT 178

Query: 180 SDRLPLINHQVQAPAYVIGDPPFAAKYDPVKPTAYAWNVKIHFNPSQ 226
            DR+PL+N+    P YV+G P   ++ D       AW+++I+   +Q
Sbjct: 179 PDRVPLLNNAAIPPPYVVGSPVVGSRND-------AWSIRINEKVNQ 218

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446928|ref|XP_002263228.1| PREDICTED: uncharacterized protein LOC100261981 [Vitis vinifera] gi|297739115|emb|CBI28766.3| unnamed protein product [Vitis vinifera]

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 107/207 (51%), Positives = 141/207 (68%), Gaps = 7/207 (3%)

Query: 1   MERIAITCLQSFLKALNLIMGIVGISMILYGIWMIRVWQRDMEGQSFDDFCSINPWFICS 60
           M RI  +C+QS LK +N I+G+VGI+M++Y +WMIRVW R M     DD+ S  PWFI +
Sbjct: 1   MGRIFRSCMQSILKLVNSIIGMVGIAMVMYALWMIRVWNRHM-----DDYDSRAPWFIYT 55

Query: 61  FIGIGVTFCLITCLGHIAAASANGFCLSFYMLITCLLLLLETAIAADIQLNSEWEKDLPD 120
           F+G+G T CL TC GH AA +ANG CL  YM+    LL+LE  + AD+ LN +WE+D P+
Sbjct: 56  FLGLGATLCLFTCFGHAAAETANGCCLYVYMMYIFFLLILEAGVTADVFLNHDWEEDFPE 115

Query: 121 DPTGRFHDFKKFVKSNFDIFKWIGIWIISAQVSSALLAMALRALGSNQGYSYDNDGEFLS 180
           DPTG FH+FK FV+SNF+I KWIG+ I+  Q  S LLAM L+ALG +Q   YD+D E+  
Sbjct: 116 DPTGSFHEFKNFVRSNFEICKWIGLSILFVQGLSILLAMVLKALGPHQ--YYDSDDEYAP 173

Query: 181 DRLPLINHQVQAPAYVIGDPPFAAKYD 207
            R PL+ + V  P YV GDP   ++ D
Sbjct: 174 TRAPLLRNAVHPPPYVAGDPFSGSRTD 200

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297832674|ref|XP_002884219.1| hypothetical protein ARALYDRAFT_480909 [Arabidopsis lyrata subsp. lyrata] gi|297330059|gb|EFH60478.1| hypothetical protein ARALYDRAFT_480909 [Arabidopsis lyrata subsp. lyrata]

 Score =  210 bits (535), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 104/221 (47%), Positives = 140/221 (63%), Gaps = 7/221 (3%)

Query: 1   MERIAITCLQSFLKALNLIMGIVGISMILYGIWMIRVWQRDMEGQSFDDFCSINPWFICS 60
           M RI  +CLQS LK +N ++G+VGI+MILY +W+IR WQ  M    F D     PWFI S
Sbjct: 1   MVRIVRSCLQSMLKLVNSLIGMVGIAMILYAVWLIRQWQEQMGNLPFADSDHPVPWFIYS 60

Query: 61  FIGIGVTFCLITCLGHIAAASANGFCLSFYMLITCLLLLLETAIAADIQLNSEWEKDLPD 120
           F+G+G   C++TC GHIAA + NG CL  YM    LL+++E  + ADI LN +W+KD P+
Sbjct: 61  FLGLGAILCVVTCAGHIAAETVNGCCLYLYMGFIVLLVMVEGGVVADIFLNRDWKKDFPE 120

Query: 121 DPTGRFHDFKKFVKSNFDIFKWIGIWIISAQVSSALLAMALRALGSNQGYSYDNDGEFLS 180
           DP+G FH F KF++SNF I KWIG+ I+  Q  S LLAM L+ALG +    YD+D E+  
Sbjct: 121 DPSGAFHQFSKFIESNFKICKWIGLSIVCVQGLSVLLAMLLKALGPHPYRHYDSDDEYNV 180

Query: 181 DRLPLINHQVQAPAYVIGDPPFAAKYDPVKPTAYAWNVKIH 221
             + L+    Q P YV+G+P + AK         AW V+I+
Sbjct: 181 STVALLQDGRQLPPYVVGEPMYGAK-------PGAWTVRIN 214

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147856838|emb|CAN83474.1| hypothetical protein VITISV_004797 [Vitis vinifera]

 Score =  210 bits (534), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 112/255 (43%), Positives = 150/255 (58%), Gaps = 41/255 (16%)

Query: 1   MERIAITCLQSFLKALNLIMGIVGISMILYGIWMIRVWQRDMEGQSFDDFCSINPWFICS 60
           M RI  +C+QS LK +N I+G+VGI+M++Y +WMIRVW R M     DD+ S  PWFI +
Sbjct: 1   MGRIFRSCMQSILKLVNSIIGMVGIAMVMYALWMIRVWNRHM-----DDYDSRAPWFIYT 55

Query: 61  FIGIGVTFCLITCLGHIAAASANGFCLSFYMLITCLLLLLETAIAADIQLNSEWEKDLPD 120
           F+G+G T CL TC GH AA +ANG CL  YM+    LL+LE  + AD+ LN +WE+D P+
Sbjct: 56  FLGLGATLCLFTCFGHAAAETANGCCLYVYMMYIFFLLILEAGVTADVFLNHDWEEDFPE 115

Query: 121 DPTGRFHDFKKFVKSNFDIFKWIGIWIISAQVS--------------------------- 153
           DPTG FH+FK FV+SNF+I KWIG+ I+  Q+                            
Sbjct: 116 DPTGSFHEFKNFVRSNFEICKWIGLSILFVQMQNCFCLRIYVFISPIIWFLLVDLPSQGL 175

Query: 154 SALLAMALRALGSNQGYSYDNDGEFLSDRLPLINHQVQAPAYVIGDPPFAAKYDPVKPTA 213
           S LLAM L+ALG +Q   YD+D E+   R PL+ + V  P YV GDP   ++ D      
Sbjct: 176 SILLAMVLKALGPHQ--YYDSDDEYAPTRAPLLRNAVHPPPYVAGDPFSGSRTD------ 227

Query: 214 YAWNVKIHFNPSQLF 228
            A+  +I+  P  LF
Sbjct: 228 -AYGKRINEKPFDLF 241

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359497089|ref|XP_003635421.1| PREDICTED: uncharacterized protein LOC100854362 [Vitis vinifera]

 Score =  209 bits (532), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 113/200 (56%), Positives = 145/200 (72%), Gaps = 1/200 (0%)

Query: 1   MERIAITCLQSFLKALNLIMGIVGISMILYGIWMIRVWQRDMEGQSFDDFCSIN-PWFIC 59
           M R+  + LQS LK +NL+MG+VG+++ILYG+WM+RVWQRDM+G S D F   + PWFI 
Sbjct: 1   MARLVKSFLQSMLKLVNLVMGMVGVTIILYGLWMMRVWQRDMQGTSSDSFEPPHFPWFIW 60

Query: 60  SFIGIGVTFCLITCLGHIAAASANGFCLSFYMLITCLLLLLETAIAADIQLNSEWEKDLP 119
           + I  G++FC+IT +GHIAA + NG CLS YM+I   LLLLETA+AADI LNS+WEKDLP
Sbjct: 61  ASIITGISFCVITSIGHIAADTVNGHCLSCYMVILVSLLLLETALAADIFLNSDWEKDLP 120

Query: 120 DDPTGRFHDFKKFVKSNFDIFKWIGIWIISAQVSSALLAMALRALGSNQGYSYDNDGEFL 179
           +DPTGRF DFK FV SN ++F+WIG+ I+ AQ  S LLAM LR     Q  +YD+D  + 
Sbjct: 121 EDPTGRFDDFKDFVNSNIEMFQWIGLLIVLAQGISILLAMVLRTTERGQASNYDSDDAYT 180

Query: 180 SDRLPLINHQVQAPAYVIGD 199
           + R PL+N  VQ   YV  D
Sbjct: 181 TARNPLLNGPVQPLPYVAND 200

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30681117|ref|NP_179667.2| Tetraspanin family protein [Arabidopsis thaliana] gi|75163928|sp|Q940P5.1|TET19_ARATH RecName: Full=Tetraspanin-19 gi|18087599|gb|AAL58930.1|AF462842_1 At2g20740/F5H14.29 [Arabidopsis thaliana] gi|15809899|gb|AAL06877.1| At2g20740/F5H14.29 [Arabidopsis thaliana] gi|20453255|gb|AAM19866.1| At2g20740/F5H14.29 [Arabidopsis thaliana] gi|51969248|dbj|BAD43316.1| hypothetical protein [Arabidopsis thaliana] gi|51970314|dbj|BAD43849.1| hypothetical protein [Arabidopsis thaliana] gi|330251971|gb|AEC07065.1| Tetraspanin family protein [Arabidopsis thaliana]

 Score =  209 bits (531), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 102/220 (46%), Positives = 138/220 (62%), Gaps = 7/220 (3%)

Query: 1   MERIAITCLQSFLKALNLIMGIVGISMILYGIWMIRVWQRDMEGQSFDDFCSINPWFICS 60
           M RI  +CLQS LK +N ++G+VGI+MILY +W+IR WQ  M    F D     PWFI S
Sbjct: 1   MVRIVRSCLQSMLKLVNSLIGMVGIAMILYAVWLIRQWQEQMGNLPFADSDHPVPWFIYS 60

Query: 61  FIGIGVTFCLITCLGHIAAASANGFCLSFYMLITCLLLLLETAIAADIQLNSEWEKDLPD 120
           F+G+G   C++TC GHIAA + NG CL  YM    LL ++E  + ADI LN +W+KD P+
Sbjct: 61  FLGLGAILCVVTCAGHIAAETVNGCCLYLYMGFIVLLTMVEGGVVADIFLNRDWKKDFPE 120

Query: 121 DPTGRFHDFKKFVKSNFDIFKWIGIWIISAQVSSALLAMALRALGSNQGYSYDNDGEFLS 180
           DP+G FH F KF++SNF I KWIG+ I+  Q  S L+AM L+ALG +    YD+D E+  
Sbjct: 121 DPSGAFHQFSKFIESNFKICKWIGLSIVCVQGLSVLIAMLLKALGPHPHRHYDSDDEYNV 180

Query: 181 DRLPLINHQVQAPAYVIGDPPFAAKYDPVKPTAYAWNVKI 220
             + L+    Q P YV+G+P + AK         AW V++
Sbjct: 181 STVALLQDARQPPPYVVGEPMYGAK-------PGAWTVRL 213

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296084735|emb|CBI25876.3| unnamed protein product [Vitis vinifera]

 Score =  209 bits (531), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 115/211 (54%), Positives = 150/211 (71%), Gaps = 2/211 (0%)

Query: 1   MERIAITCLQSFLKALNLIMGIVGISMILYGIWMIRVWQRDMEGQSFDDFCSIN-PWFIC 59
           M R+  + LQS LK +NL+MG+VG+++ILYG+WM+RVWQRDM+G S D F   + PWFI 
Sbjct: 1   MARLVKSFLQSMLKLVNLVMGMVGVTIILYGLWMMRVWQRDMQGTSSDSFEPPHFPWFIW 60

Query: 60  SFIGIGVTFCLITCLGHIAAASANGFCLSFYMLITCLLLLLETAIAADIQLNSEWEKDLP 119
           + I  G++FC+IT +GHIAA + NG CLS YM+I   LLLLETA+AADI LNS+WEKDLP
Sbjct: 61  ASIITGISFCVITSIGHIAADTVNGHCLSCYMVILVSLLLLETALAADIFLNSDWEKDLP 120

Query: 120 DDPTGRFHDFKKFVKSNFDIFKWIGIWIISAQVSSALLAMALRALGSNQGYSYDNDGEFL 179
           +DPTGRF DFK FV SN ++F+WIG+ I+ AQ  S LLAM LR     Q  +YD+D  + 
Sbjct: 121 EDPTGRFDDFKDFVNSNIEMFQWIGLLIVLAQGISILLAMVLRTTERGQASNYDSDDAYT 180

Query: 180 SDRLPLINHQVQAPAYVIGDPPFAAKYDPVK 210
           + R PL+N  VQ   YV  D  +   +D +K
Sbjct: 181 TARNPLLNGPVQPLPYVAND-AWTVGHDSMK 210

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726534|ref|NP_001236362.1| uncharacterized protein LOC100527459 [Glycine max] gi|255632402|gb|ACU16551.1| unknown [Glycine max]

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 100/208 (48%), Positives = 140/208 (67%), Gaps = 5/208 (2%)

Query: 1   MERIAITCLQSFLKALNLIMGIVGISMILYGIWMIRVWQRDMEGQSF-DDFCSINPWFIC 59
           M R+  +C+QS LK +N ++G+ G++MILY  WMIRVWQR M    F  D     PWFI 
Sbjct: 1   MVRVLRSCIQSILKLVNSVIGMAGLAMILYSAWMIRVWQRKMGELPFGHDSDYPPPWFIY 60

Query: 60  SFIGIGVTFCLITCLGHIAAASANGFCLSFYMLITCLLLLLETAIAADIQLNSEWEKDLP 119
            F+G+GV FC+ITCLGH+AA +ANG CL  YM+   LL++LE A+  D+ +N +WEKD P
Sbjct: 61  MFLGLGVAFCVITCLGHVAAETANGCCLHLYMVFVVLLIMLEAAVTVDVFVNQDWEKDFP 120

Query: 120 DDPTGRFHDFKKFVKSNFDIFKWIGIWIISAQVSSALLAMALRALGSNQGYSYDNDGEFL 179
            DP+G F  FK F++SN+++ KW+G+ ++S Q  S LLAM L+ALG +Q   YD+D E+ 
Sbjct: 121 KDPSGSFDQFKNFIRSNYEMCKWVGLSLVSVQGLSLLLAMILKALGPHQ--YYDSDDEYA 178

Query: 180 SDRLPLINHQVQAPAYVIGDPPFAAKYD 207
            DR+PL+ +    P YV+ DP +    D
Sbjct: 179 PDRVPLLRN--APPHYVVVDPGYVHGND 204

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	234
TAIR|locus:2051348	221	AT2G20740 "AT2G20740" [Arabido	0.876	0.927	0.443	6.2e-46
TAIR|locus:2038997	270	AT2G20230 [Arabidopsis thalian	0.598	0.518	0.379	7.6e-29
TAIR|locus:2033718	280	TOM2A "tobamovirus multiplicat	0.679	0.567	0.307	6.9e-23

TAIR|locus:2051348 AT2G20740 "AT2G20740" [Arabidopsis thaliana (taxid:3702)]

 Score = 482 (174.7 bits), Expect = 6.2e-46, P = 6.2e-46
 Identities = 91/205 (44%), Positives = 121/205 (59%)

Query:     1 MERIAITCLQSFLKALNLIMGIVGISMILYGIWMIRVWQRDMEGQSFDDFCSINPWFICS 60
             M RI  +CLQS LK +N ++G+VGI+MILY +W+IR WQ  M    F D     PWFI S
Sbjct:     1 MVRIVRSCLQSMLKLVNSLIGMVGIAMILYAVWLIRQWQEQMGNLPFADSDHPVPWFIYS 60

Query:    61 FIGIGVTFCLITCLGHIAAASANGFCLSFYMLITCXXXXXETAIAADIQLNSEWEKDLPD 120
             F+G+G   C++TC GHIAA + NG CL  YM         E  + ADI LN +W+KD P+
Sbjct:    61 FLGLGAILCVVTCAGHIAAETVNGCCLYLYMGFIVLLTMVEGGVVADIFLNRDWKKDFPE 120

Query:   121 DPTGRFHDFKKFVKSNFDIFKWIGIWIISAQVSSXXXXXXXXXXGSNQGYSYDNDGEFLS 180
             DP+G FH F KF++SNF I KWIG+ I+  Q  S          G +    YD+D E+  
Sbjct:   121 DPSGAFHQFSKFIESNFKICKWIGLSIVCVQGLSVLIAMLLKALGPHPHRHYDSDDEYNV 180

Query:   181 DRLPLINHQVQAPAYVIGDPPFAAK 205
               + L+    Q P YV+G+P + AK
Sbjct:   181 STVALLQDARQPPPYVVGEPMYGAK 205

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2038997 AT2G20230 [Arabidopsis thaliana (taxid:3702)]

 Score = 255 (94.8 bits), Expect = 7.6e-29, Sum P(2) = 7.6e-29
 Identities = 55/145 (37%), Positives = 76/145 (52%)

Query:    55 PWFICSFIGIGVTFCLITCLGHIAAASANGFCLSFYMLITCXXXXXETAIAADIQLNSEW 114
             PWFI SF+ +G+  C++T +G IAA + NG CL FY ++       E A+ A I ++  W
Sbjct:    98 PWFIYSFMAVGILVCIVTFIGFIAAEAINGCCLCFYSILKTLLILLEAALVAYIAIDRHW 157

Query:   115 EKDLPDDPTGRFHDFKKFVKSNFDIFKWIGIWIISAQVSSXXXXXXXXXXGSNQGYSYDN 174
             EKDLP DPTG     + F++ N DI KW+GI +++ Q+ S           S      D 
Sbjct:   158 EKDLPYDPTGELSSLRAFIEENIDICKWVGIAVVAVQLLSLLLAMVLRAMVSTPKPELDE 217

Query:   175 --DGEFLSDRL--PLINHQV-QAPA 194
               D E    R   PL+  Q  QAPA
Sbjct:   218 EEDDENPRSRTWDPLLGPQGNQAPA 242

GO:0016021 "integral to membrane" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

TAIR|locus:2033718 TOM2A "tobamovirus multiplication 2A" [Arabidopsis thaliana (taxid:3702)]

 Score = 201 (75.8 bits), Expect = 6.9e-23, Sum P(2) = 6.9e-23
 Identities = 52/169 (30%), Positives = 77/169 (45%)

Query:    56 WFICSFIGIGVTFCLITCLGHIAAASANGFCLSFYMLITCXXXXXETAIAADIQLNSEWE 115
             WFI  FIGIGV   +I+C G +   S +  CLS Y L+       E   AA I  ++ W 
Sbjct:    80 WFIYLFIGIGVALFVISCCGCVGTCSRSVCCLSCYSLLLILLILVELGFAAFIFFDNSWR 139

Query:   116 KDLPDDPTGRFHDFKKFVKSNFDIFKWIGIWIISAQVSSXXXXXXXXXXGSNQGYSYDND 175
              +LP D TG F     F++ N+ I +W+ +  +  +  +           +N    YD+D
Sbjct:   140 DELPSDRTGNFDTIYNFLRENWKIVRWVALGAVVFE--ALLFLLALMVRAANTPAEYDSD 197

Query:   176 GEFLSDRL----PLINHQVQAPAYVIGDPPFAAKYDPVKPTAYAWNVKI 220
              E+L+ R     P IN Q  AP  V G  P A   D     +  W+ ++
Sbjct:   198 DEYLAPRQQIRQPFINRQA-AP--VTG-VPVAPTLDQRPSRSDPWSARM 242

GO:0005576 "extracellular region" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0016020 "membrane" evidence=ISS

GO:0046786 "viral replication complex formation and maintenance" evidence=IMP

GO:0005773 "vacuole" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q940P5	TET19_ARATH	No assigned EC number	0.4636	0.9102	0.9638	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pm.C_LG_IV000199 hypothetical protein (214 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	234
pfam00335	221	pfam00335, Tetraspannin, Tetraspanin family	7e-08

>gnl|CDD|215864 pfam00335, Tetraspannin, Tetraspanin family

 Score = 50.9 bits (122), Expect = 7e-08
 Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 4/99 (4%)

Query: 8   CLQSFLKALNLIMGIVGISMILYGIWMIRVWQRDMEGQSFDDFCSINPWFICSFIGIGVT 67
           CL+  L  LNL+  ++G++++  GIW+        +                  I +GV 
Sbjct: 1   CLKYLLFLLNLLFLLLGLALLAVGIWL----LVIAKDYLAIALNDSIRALYILIIVLGVI 56

Query: 68  FCLITCLGHIAAASANGFCLSFYMLITCLLLLLETAIAA 106
             L+  LG   A   +   L  Y ++  +L +LE A   
Sbjct: 57  ILLVGFLGCCGAIKESRCLLLTYFILLLILFILEIAAGI 95

Length = 221

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	234
KOG3882	237	consensus Tetraspanin family integral membrane pro	99.95
PF00335	221	Tetraspannin: Tetraspanin family RDS_ROM1 subfamil	99.73
KOG4433	526	consensus Tweety transmembrane/cell surface protei	91.93
cd03164	86	CD53_like_LEL Tetraspanin, extracellular domain or	89.12
PF15050	133	SCIMP: SCIMP protein	83.63
PRK10263	1355	DNA translocase FtsK; Provisional	83.36
PF07086	186	DUF1352: Protein of unknown function (DUF1352); In	81.52

>KOG3882 consensus Tetraspanin family integral membrane protein [General function prediction only]

Probab=99.95  E-value=7.7e-27  Score=202.84  Aligned_cols=164  Identities=22%  Similarity=0.262  Sum_probs=136.3

Q ss_pred             CcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccCccCCCChhhHHHHHHHHHHHHHHHHhhhhHHh
Q 026705            1 MERIAITCLQSFLKALNLIMGIVGISMILYGIWMIRVWQRDMEGQSFDDFCSINPWFICSFIGIGVTFCLITCLGHIAAA   80 (234)
Q Consensus         1 M~~~~~~clK~lL~~~N~if~l~Gl~li~~Giw~~~~~~~~~~~~~~~~~~~~~~~~iy~li~vG~il~lvsflGc~GA~   80 (234)
                      |.+++.+|+|++++++|+++|++|++++++|+|+..+...+....   ...  .....++++++|++++++|++||+||.
T Consensus         1 ~~~~~~~~~K~~lf~~N~~~~l~G~~ll~~giw~~~~~~~~~~~~---~~~--~~~~~~ili~~G~v~~~v~flGc~Ga~   75 (237)
T KOG3882|consen    1 MMSCGSSCLKYLLFLLNLLFWLLGLLLLAVGIWLLADKGFLSSLL---ESD--FLVPAYILIAVGGVVFLVGFLGCCGAL   75 (237)
T ss_pred             CCCcccchHHHHHHHHHHHHHHHHHHHHHhhhheeEeccchhhcc---ccc--hhcchhhhhhhhHHHHHHHHhhhhhhH
Confidence            446788999999999999999999999999999988766543321   000  011236899999999999999999999


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHhHhhcc---------------------------------------------cccc
Q 026705           81 SANGFCLSFYMLITCLLLLLETAIAADIQLN---------------------------------------------SEWE  115 (234)
Q Consensus        81 ~en~c~L~~Y~vll~ll~llEla~~~~~~~~---------------------------------------------~dW~  115 (234)
                      |||+|+|.+|++++++++++|++++++.+..                                             .||.
T Consensus        76 ~es~~lL~~y~~~l~l~~i~e~~~~i~~~~~~~~l~~~~~~~~~~~~~~~y~~~~~~~~~~d~~Q~~~~CCG~~~~~~~~  155 (237)
T KOG3882|consen   76 RESRCLLLSYFILLLLLFIAELAAGILAFVFRDSLRDELEEQLLKSIWNNYSSDPDLGEAWDKLQRELKCCGVNGYSDYF  155 (237)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhheeHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHhccCCcCCCchHHh
Confidence            9999999999999999999999998877632                                             1222


Q ss_pred             cc----CCC-------------------CCCChHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 026705          116 KD----LPD-------------------DPTGRFHDFKKFVKSNFDIFKWIGIWIISAQVSSALLAMALRALGSNQG  169 (234)
Q Consensus       116 ~~----iP~-------------------~~~GC~~~l~~fl~~n~~i~~~v~l~v~~iqllgiilA~~L~~~~~~~~  169 (234)
                      +.    +|+                   +.+||.+++++|+++|+.++++++++++++|++++++|++|...+++++
T Consensus       156 ~~~~~~vP~SCC~~~~~~~~~~~~~~~~~~~GC~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~a~~l~~~i~~~~  232 (237)
T KOG3882|consen  156 NCSSNNVPPSCCKRTRRQKFPQDVPDNIYTEGCLEKLSSWLESNLLIIGGVGLGIAVLELLGMILACCLANAIRNQR  232 (237)
T ss_pred             cCCCCCCCcccCCCcccccccccchhhhhccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            11    454                   2579999999999999999999999999999999999999988777654

>PF00335 Tetraspannin: Tetraspanin family RDS_ROM1 subfamily; InterPro: IPR018499 A number of eukaryotic CD antigens have been shown to be related []

Probab=99.73  E-value=3.5e-19  Score=148.22  Aligned_cols=152  Identities=24%  Similarity=0.384  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccCccCCCChhhHHHHHHHHHHHHHHHHhhhhHHhhhhhhHH
Q 026705            8 CLQSFLKALNLIMGIVGISMILYGIWMIRVWQRDMEGQSFDDFCSINPWFICSFIGIGVTFCLITCLGHIAAASANGFCL   87 (234)
Q Consensus         8 clK~lL~~~N~if~l~Gl~li~~Giw~~~~~~~~~~~~~~~~~~~~~~~~iy~li~vG~il~lvsflGc~GA~~en~c~L   87 (234)
                      |+|+++.++|++++++|++++++|+|+....+.....    .. .......+.++.+|+++++++++||+|+.++|+|++
T Consensus         1 c~k~~l~~~n~l~~l~g~~li~~g~~~~~~~~~~~~~----~~-~~~~~~~~~~i~~G~~~~~~~~~G~~~~~~~~~~~l   75 (221)
T PF00335_consen    1 CLKYILFFLNVLFLLLGLALIGVGIWLLVNNQYLSEF----SS-SFISYVIIILIFIGIFILIISFLGCIGACRKNRCLL   75 (221)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc----cc-cchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccc
Confidence            8999999999999999999999999984221111110    00 111122356777999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhHhhcc---------------------------------------------ccccccC----
Q 026705           88 SFYMLITCLLLLLETAIAADIQLN---------------------------------------------SEWEKDL----  118 (234)
Q Consensus        88 ~~Y~vll~ll~llEla~~~~~~~~---------------------------------------------~dW~~~i----  118 (234)
                      ..|.+++++++++|+++++..+..                                             +||.+..    
T Consensus        76 ~~y~~~~~~~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iq~~~~CCG~~~~~d~~~~~~~~~  155 (221)
T PF00335_consen   76 IIYIILLILLFVLELVVGIVAFSYRDQLNSSLKDGLSLRCMKSYNSNESFSEAWDNIQEKFECCGVNSPDDWFTSKWSSC  155 (221)
T ss_dssp             ------------------------HHHHHHHHHHHHHHHHHHSSTT-CHHHHHHHHHHHHHT--SSTTCHHHHHHHHHT-
T ss_pred             cccccchhhHHHHHHHHHHhhhhccccccccccccccchhhhccccccchhhheecccccccccCCCCCccccccccccc
Confidence            999999999999999887665431                                             1231110    


Q ss_pred             -------------------CCCCCChHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHhh
Q 026705          119 -------------------PDDPTGRFHDFKKFVKSNFDIFKWIGIWIISAQVSSALLAMALRAL  164 (234)
Q Consensus       119 -------------------P~~~~GC~~~l~~fl~~n~~i~~~v~l~v~~iqllgiilA~~L~~~  164 (234)
                                         +.+.+||.+++.++++++...+++++++++++|++++++|++|++.
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~gC~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~l~~~  220 (221)
T PF00335_consen  156 SSPDSCPDCQCPDDCSSENSIYTRGCYDKLREYLRSYLKYIGIVSLAILVLQLIGIILACCLCRH  220 (221)
T ss_dssp             --------TCS-TTCCCCHCCTST-HHHHHHHHHCT-----------------------------
T ss_pred             ccccccccccccccccccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence                               0146899999999999999999999999999999999999998653

CD9 (also called DRAP-27, MRP-1 or p24) upregulates HB-EGF activity as a receptor for diphtheria toxin as well as its juxtacrine activity. CD9 mAbs modulate cell adhesion and migration and trigger platelet activation that is blocked by mAbs directed to the platelet Fc receptor CD32. In mice, CD9 mAb KMC8.8 has been shown to inhibit the production of myeloid cells in vitro and has a costimulatory activity for T cells. CD9 is a type III membrane protein, with four putative transmembrane domains. CD37 (or gp52-40) is involved in signal transduction and serves as a stable marker for malignancies derived from mature B cells, like B-CLL, HCL, and all types of B-NHL. CD63 transfection reduced melanoma cell motility on fibronectin, collagen and laminin, and reduced the growth and metastasis of melanoma cells in nude mice []. CD63 has been used as a marker for late endosomes and for primary melanomas. These proteins are all type II membrane proteins: they contain an N-terminal transmembrane (TM) domain, which acts both as a signal sequence and a membrane anchor, and 3 additional TM regions (hence the name 'TM4'). The sequences contain a number of conserved cysteine residues. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016021 integral to membrane; PDB: 1IV5_A 1G8Q_A.

>KOG4433 consensus Tweety transmembrane/cell surface protein [General function prediction only]

Probab=91.93  E-value=4.7  Score=39.09  Aligned_cols=39  Identities=10%  Similarity=0.101  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHHhhhhHHhhhhhhHHHHHHHHHHHHHHH
Q 026705           62 IGIGVTFCLITCLGHIAAASANGFCLSFYMLITCLLLLL  100 (234)
Q Consensus        62 i~vG~il~lvsflGc~GA~~en~c~L~~Y~vll~ll~ll  100 (234)
                      ++.=.+.+++-+.++.|-.|+|+|.+..|++.=++.+++
T Consensus       214 v~lL~l~LvvC~v~vlglak~Skc~li~fsv~Gll~lvi  252 (526)
T KOG4433|consen  214 VLLLTLLLVVCLVLVLGLAKRSKCLLIVFSVCGLLALVI  252 (526)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHH
Confidence            344567778888899999999999999998885555544

>cd03164 CD53_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD53_Like family

Probab=89.12  E-value=0.24  Score=35.91  Aligned_cols=21  Identities=24%  Similarity=0.400  Sum_probs=18.2

Q ss_pred             CCCChHHHHHHHHHhcccchh
Q 026705          121 DPTGRFHDFKKFVKSNFDIFK  141 (234)
Q Consensus       121 ~~~GC~~~l~~fl~~n~~i~~  141 (234)
                      +.+||.+++.+|+++|+.+++
T Consensus        66 ~~~GC~~~~~~~~~~~~~iig   86 (86)
T cd03164          66 KVEGCYKKLKNWFESNFLYTG   86 (86)
T ss_pred             ccccHHHHHHHHHHHHHHHhC
Confidence            467999999999999998764

Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD53 is a tetraspanin of the lymphoid-myeloid lineage and has been implicated in apoptosis protection. It associates with integrin alpha4beta1. Some of the cellular responses modulated by CD53 may be mediated by JNK activation and/or via the AKT pathway.

>PF15050 SCIMP: SCIMP protein

Probab=83.63  E-value=3  Score=33.14  Aligned_cols=33  Identities=24%  Similarity=0.243  Sum_probs=23.7

Q ss_pred             HHHHhcccchhhHHHHHHHHHHHHHHHHHHHHhh
Q 026705          131 KFVKSNFDIFKWIGIWIISAQVSSALLAMALRAL  164 (234)
Q Consensus       131 ~fl~~n~~i~~~v~l~v~~iqllgiilA~~L~~~  164 (234)
                      +|.++|+-++-++++.++. -.+|+++-|+.|..
T Consensus         2 ~WWr~nFWiiLAVaII~vS-~~lglIlyCvcR~~   34 (133)
T PF15050_consen    2 SWWRDNFWIILAVAIILVS-VVLGLILYCVCRWQ   34 (133)
T ss_pred             chHHhchHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence            6899999999988865543 44677777665433

>PRK10263 DNA translocase FtsK; Provisional

Probab=83.36  E-value=41  Score=36.77  Aligned_cols=15  Identities=7%  Similarity=-0.029  Sum_probs=9.6

Q ss_pred             HHHHHHHHHHHHHHH
Q 026705           59 CSFIGIGVTFCLITC   73 (234)
Q Consensus        59 y~li~vG~il~lvsf   73 (234)
                      +.+++++++++.+.+
T Consensus        76 ~~LFGl~AYLLP~LL   90 (1355)
T PRK10263         76 FFIFGVMAYTIPVII   90 (1355)
T ss_pred             HHHHhHHHHHHHHHH
Confidence            456777777766533

>PF07086 DUF1352: Protein of unknown function (DUF1352); InterPro: IPR009787 This family consists of several hypothetical eukaryotic proteins of around 190 residues in length

Probab=81.52  E-value=14  Score=31.59  Aligned_cols=88  Identities=16%  Similarity=0.122  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccCccCCCChhhHHHHHHHHHHHHHHHHhhhhHHhhhhhhHHH
Q 026705            9 LQSFLKALNLIMGIVGISMILYGIWMIRVWQRDMEGQSFDDFCSINPWFICSFIGIGVTFCLITCLGHIAAASANGFCLS   88 (234)
Q Consensus         9 lK~lL~~~N~if~l~Gl~li~~Giw~~~~~~~~~~~~~~~~~~~~~~~~iy~li~vG~il~lvsflGc~GA~~en~c~L~   88 (234)
                      +|.+ +++++++++++++-++.+.-..++....         ..|.+|- |..+ +   -++.+++|-.|--|.|.-.|.
T Consensus        37 lk~l-~~~h~ll~l~~~a~v~~~~L~~i~~~~~---------p~p~~We-y~~~-l---S~ip~~~G~~s~~rN~i~~l~  101 (186)
T PF07086_consen   37 LKKL-ILFHALLWLLMAAKVSVDILLEISELQI---------PSPYQWE-YIWC-L---SLIPSLLGLLSLRRNNISLLR  101 (186)
T ss_pred             HHHH-HHHHHHHHHHHHHHHHHHHHHHhhcccc---------CChhHHH-HHHH-H---HHHHHHHHHHhcccchHHHHH
Confidence            4433 3667778887777777666644332210         0233452 3322 2   344566777777788888888


Q ss_pred             HHHHHHHHHHHHHHHHHhHhhcc
Q 026705           89 FYMLITCLLLLLETAIAADIQLN  111 (234)
Q Consensus        89 ~Y~vll~ll~llEla~~~~~~~~  111 (234)
                      .|++-.+++-++=+..++..++.
T Consensus       102 ~y~~~~~~~gl~pl~~g~~~~~~  124 (186)
T PF07086_consen  102 LYMIGSSLFGLLPLIYGAMYYFP  124 (186)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            88776666545545555554443

The function of this family is unknown.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00