Citrus Sinensis ID: 026712

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230----
Protein Sequence
MSSISIPSCLTLARLNANGVINSVPHLQLPITVATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIKRDGERST
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccHHHHHHHccccHHHHHHHHHcccccccccccccccccccccccccccEEEEcccccHHHHHHHHHHccccEEEEEcccccEEEEEEHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHcccccccccccccEEEcccccHHHHHHHHHHccccEEcEEccccEEEEEEEHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEcccEEEEEEccccccccccEccccEEEcccccHHHHcccccHHHHHHHHHcccccEEcccccHccccEEEEEcccccccEEEcccccHHHHHHHHHHccccccEEEccccEEEEEEEHHHHHHHHHccccccccccccHHHHHHHccHHHHHHHHHHHHcccHHHHcccccEEEcccccHHHHHHHHHHccccccEEEccccEEEEEEEHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
mssisipsclTLARLNAngvinsvphlqlpitvatpshlskrLRFFTVSREVKAFahngvgitnsvpprngtytvgdfmtkkedlhavKTTTTVDEALERLVEKRitgfpvidddwklvgvvsDYDLlaldsisggnqndtslfpnvnsTWKTFNELQRLLSKtngkvvgdlmtpaplvvhentnLEDAARLLLETKyrrlpvvdgygKLVGLITRGNVVRAALQIKRDGERST
Flexible Loop (DISEMBL)
MSSISIPSCLTLARLNANGVINSVPHLQLPITVATPSHLSKRLRFFTVSREVKAFahngvgitnsvpprnGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEkritgfpvidddwklVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGklvglitrgnvvraalqikrdgerst
Low Complexity Region (SEG)
MSSISIPSCLTLARLNANGVINSVPHLQLPITVATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIKRDGERST
Disordered region (IsUnstruct)
*****IPSCLTLARLNANGVINSVPHLQLPITVATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQI********
Disordered Region (DISOPRED)
*********L****LNAN*******************************REVKAFA***************TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAAL**********
Disordered Region (DISEMBL)
MSSISIPSCLTLARLNANGVINSVPHLQLPITVATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQI********
Disordered Region (DISPRO)
*SSISIPSCLTLARLNANGVINSVPHLQLPITVATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIKR******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSSISIPSCLTLARLNANGVINSVPHLQLPITVATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIKRDGERST
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	234	2.2.26 [Sep-21-2011]
O23193	236	CBS domain-containing pro	yes	no	0.730	0.724	0.801	2e-76
Q9C5D0	238	CBS domain-containing pro	no	no	0.829	0.815	0.714	5e-75
Q58821	168	Uncharacterized protein M	yes	no	0.525	0.732	0.308	1e-10
O58045	486	Inosine-5'-monophosphate	yes	no	0.440	0.211	0.311	1e-08
Q9UY49	485	Inosine-5'-monophosphate	yes	no	0.440	0.212	0.304	1e-08
P65167	529	Inosine-5'-monophosphate	yes	no	0.658	0.291	0.288	5e-08
P65168	529	Inosine-5'-monophosphate	yes	no	0.658	0.291	0.288	5e-08
P42851	485	Inosine-5'-monophosphate	yes	no	0.440	0.212	0.282	4e-07
Q58332	138	Uncharacterized protein M	no	no	0.525	0.891	0.286	4e-07
Q54H97	145	CBS domain-containing pro	yes	no	0.564	0.910	0.287	5e-07

>sp|O23193|CBSX1_ARATH CBS domain-containing protein CBSX1, chloroplastic OS=Arabidopsis thaliana GN=CBSX1 PE=1 SV=2

 Score =  285 bits (730), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 137/171 (80%), Positives = 153/171 (89%)

Query: 62  ITNSVPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGV 121
           +TNS  PR+G YTVG+FMTKKEDLH VK TTTVDEALE LVE RITGFPVID+DWKLVG+
Sbjct: 64  MTNSSSPRSGVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGL 123

Query: 122 VSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVH 181
           VSDYDLLALDSISG  + + S+FP V+STWKTFN +Q+LLSKTNGK+VGDLMTPAPLVV 
Sbjct: 124 VSDYDLLALDSISGSGRTENSMFPEVDSTWKTFNAVQKLLSKTNGKLVGDLMTPAPLVVE 183

Query: 182 ENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIKRDGER 232
           E TNLEDAA++LLETKYRRLPVVD  GKLVG+ITRGNVVRAALQIKR G+R
Sbjct: 184 EKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVVRAALQIKRSGDR 234

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5D0|CBSX2_ARATH CBS domain-containing protein CBSX2, chloroplastic OS=Arabidopsis thaliana GN=CBSX2 PE=1 SV=1

 Score =  280 bits (717), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 140/196 (71%), Positives = 166/196 (84%), Gaps = 2/196 (1%)

Query: 41  KRLRFFTVSREVKAF--AHNGVGITNSVPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEAL 98
           +R   F+ S  V AF  A   V   NSVP +NG YTVGDFMT +++LH VK +T+VD+AL
Sbjct: 43  RRSSTFSPSITVSAFFAAPASVNNNNSVPAKNGGYTVGDFMTPRQNLHVVKPSTSVDDAL 102

Query: 99  ERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQ 158
           E LVEK++TG PVIDD+W LVGVVSDYDLLALDSISG +QNDT+LFP+V+STWKTFNELQ
Sbjct: 103 ELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDSTWKTFNELQ 162

Query: 159 RLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGN 218
           +L+SKT GKVVGDLMTP+PLVV ++TNLEDAARLLLETK+RRLPVVD  GKL+G++TRGN
Sbjct: 163 KLISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGN 222

Query: 219 VVRAALQIKRDGERST 234
           VVRAALQIKR+ E ST
Sbjct: 223 VVRAALQIKRETENST 238

Arabidopsis thaliana (taxid: 3702)

>sp|Q58821|Y1426_METJA Uncharacterized protein MJ1426 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1426 PE=4 SV=1

 Score = 67.0 bits (162), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 77/133 (57%), Gaps = 10/133 (7%)

Query: 100 RLVEK-RITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPN----VNSTWKTF 154
           RL  K +I+G PV++ D KLVG++S+ D++   +I   N++   + P+    +    KT 
Sbjct: 38  RLFRKNKISGAPVLNKDGKLVGIISESDIVK--TIVTHNEDLNLILPSPLDLIELPLKTA 95

Query: 155 NELQRLLSKTNGKV---VGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLV 211
            +++  +      +   V D+MT   +V   +  + DAA+L+++   +RLPVVD  G L+
Sbjct: 96  LKIEEFMEDLKNALKTKVRDVMTRKVIVAKPDMTINDAAKLMVKNNIKRLPVVDDEGNLI 155

Query: 212 GLITRGNVVRAAL 224
           G++TRG+++ A +
Sbjct: 156 GIVTRGDLIEALI 168

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

>sp|O58045|IMDH_PYRHO Inosine-5'-monophosphate dehydrogenase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=guaB PE=1 SV=1

 Score = 60.1 bits (144), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 69/138 (50%), Gaps = 35/138 (25%)

Query: 83  EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTS 142
           ED+  +    TVD AL  + +  I G PV++D+ K+VG+++  D+ A +           
Sbjct: 101 EDVITIAPDETVDFALFLMEKHGIDGLPVVEDE-KVVGIITKKDIAARE----------- 148

Query: 143 LFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLP 202
                                  GK+V +LMT   + V E+  +E+A ++++E +  RLP
Sbjct: 149 -----------------------GKLVKELMTKEVITVPESIEVEEALKIMIENRIDRLP 185

Query: 203 VVDGYGKLVGLITRGNVV 220
           VVD  GKLVGLIT  ++V
Sbjct: 186 VVDERGKLVGLITMSDLV 203

Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth.

Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) (taxid: 70601)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 0

EC: 5

>sp|Q9UY49|IMDH_PYRAB Inosine-5'-monophosphate dehydrogenase OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=guaB PE=3 SV=1

 Score = 60.1 bits (144), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 35/138 (25%)

Query: 83  EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTS 142
           ED+  +    TVD AL  + +  I G PV++++ K+VG++S  D+ A +           
Sbjct: 101 EDVITISPEETVDFALFLMEKHDIDGLPVVENE-KVVGIISKKDIAARE----------- 148

Query: 143 LFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLP 202
                                  GK+V +LMT   + V EN  +E+A ++++E +  RLP
Sbjct: 149 -----------------------GKLVKELMTKDVITVPENIEVEEALKIMIENRIDRLP 185

Query: 203 VVDGYGKLVGLITRGNVV 220
           VVD  G+L+GLIT  ++V
Sbjct: 186 VVDKEGRLIGLITMSDLV 203

Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth.

Pyrococcus abyssi (strain GE5 / Orsay) (taxid: 272844)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 0

EC: 5

>sp|P65167|IMDH_MYCTU Inosine-5'-monophosphate dehydrogenase OS=Mycobacterium tuberculosis GN=guaB PE=1 SV=1

 Score = 58.2 bits (139), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 88/218 (40%), Gaps = 64/218 (29%)

Query: 29  LPITVATPSHLSKRLRF-----------FTVSREVKAFAH-NGVGITNSVPP-------- 68
           +P T  T S L+K++R             T SR   A A   G+G+ +   P        
Sbjct: 60  VPATADTSSQLTKKIRLKVPLVSSAMDTVTESRMAIAMARAGGMGVLHRNLPVAEQAGQV 119

Query: 69  ----RNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSD 124
               R+    V D +T + D     T   VD    R    RI+G PV+DDD  LVG++++
Sbjct: 120 EMVKRSEAGMVTDPVTCRPD----NTLAQVDALCARF---RISGLPVVDDDGALVGIITN 172

Query: 125 YDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLV-VHEN 183
            D+                          F   Q        K V ++MT APL+   E 
Sbjct: 173 RDM-------------------------RFEVDQS-------KQVAEVMTKAPLITAQEG 200

Query: 184 TNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR 221
            +   A  LL   K  +LPVVDG G+L GLIT  + V+
Sbjct: 201 VSASAALGLLRRNKIEKLPVVDGRGRLTGLITVKDFVK 238

Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth.

Mycobacterium tuberculosis (taxid: 1773)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 0

EC: 5

>sp|P65168|IMDH_MYCBO Inosine-5'-monophosphate dehydrogenase OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=guaB PE=3 SV=1

 Score = 58.2 bits (139), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 88/218 (40%), Gaps = 64/218 (29%)

Query: 29  LPITVATPSHLSKRLRF-----------FTVSREVKAFAH-NGVGITNSVPP-------- 68
           +P T  T S L+K++R             T SR   A A   G+G+ +   P        
Sbjct: 60  VPATADTSSQLTKKIRLKVPLVSSAMDTVTESRMAIAMARAGGMGVLHRNLPVAEQAGQV 119

Query: 69  ----RNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSD 124
               R+    V D +T + D     T   VD    R    RI+G PV+DDD  LVG++++
Sbjct: 120 EMVKRSEAGMVTDPVTCRPD----NTLAQVDALCARF---RISGLPVVDDDGALVGIITN 172

Query: 125 YDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLV-VHEN 183
            D+                          F   Q        K V ++MT APL+   E 
Sbjct: 173 RDM-------------------------RFEVDQS-------KQVAEVMTKAPLITAQEG 200

Query: 184 TNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR 221
            +   A  LL   K  +LPVVDG G+L GLIT  + V+
Sbjct: 201 VSASAALGLLRRNKIEKLPVVDGRGRLTGLITVKDFVK 238

Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth.

Mycobacterium bovis (taxid: 1765)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 0

EC: 5

>sp|P42851|IMDH_PYRFU Inosine-5'-monophosphate dehydrogenase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=guaB PE=3 SV=1

 Score = 55.5 bits (132), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 69/138 (50%), Gaps = 35/138 (25%)

Query: 83  EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTS 142
           ED+  +    T+D AL  + +  I G PV+++D ++VG+++  D+ A +           
Sbjct: 101 EDVITIAPDETIDYALFLMEKHGIDGLPVVEED-RVVGIITKKDIAARE----------- 148

Query: 143 LFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLP 202
                                  G+ V +LMT   + V E+ ++E+A ++++E +  RLP
Sbjct: 149 -----------------------GRTVKELMTREVITVPESVDVEEALKIMMENRIDRLP 185

Query: 203 VVDGYGKLVGLITRGNVV 220
           VV+  GKLVGLIT  ++V
Sbjct: 186 VVNEDGKLVGLITMSDLV 203

Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth.

Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) (taxid: 186497)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 0

EC: 5

>sp|Q58332|Y922_METJA Uncharacterized protein MJ0922 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0922 PE=1 SV=1

 Score = 55.1 bits (131), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 77/157 (49%), Gaps = 34/157 (21%)

Query: 75  VGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSIS 134
           V D MTK  ++   K    V EA E++++ +I+  PVIDD+ K++G+V+  D+       
Sbjct: 10  VKDVMTK--NVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDI------- 60

Query: 135 GGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLL- 193
           G N            T +T               +GD+MT   + +HE+ ++ +A + + 
Sbjct: 61  GYN------LIRDKYTLET--------------TIGDVMTKDVITIHEDASILEAIKKMD 100

Query: 194 ----LETKYRRLPVVDGYGKLVGLITRGNVVRAALQI 226
                E    +LPVVD   KLVG+I+ G+++R   +I
Sbjct: 101 ISGKKEEIINQLPVVDKNNKLVGIISDGDIIRTISKI 137

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

>sp|Q54H97|Y8960_DICDI CBS domain-containing protein DDB_G0289609 OS=Dictyostelium discoideum GN=DDB_G0289609 PE=2 SV=1

 Score = 54.7 bits (130), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 73/153 (47%), Gaps = 21/153 (13%)

Query: 75  VGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDL-LALDSI 133
           V   M+K   L  +   TT+D AL+ L    I   PV+D+D  L G+++D DL LA DS 
Sbjct: 5   VKQLMSKS--LFTINLDTTLDVALKSLNANSIHRLPVVDNDGNLKGIITDRDLRLATDS- 61

Query: 134 SGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLL 193
                      P  N            L K     V  +M   P+ + + + + +AA+L+
Sbjct: 62  --------PFLPENNEDR---------LEKLRLHKVSSIMKQNPVTIEDFSPVVEAAKLM 104

Query: 194 LETKYRRLPVVDGYGKLVGLITRGNVVRAALQI 226
             T    LPV+D  G+L+G++TR +++   +++
Sbjct: 105 RVTNVGGLPVLDKKGRLIGMVTRSDLLDLLIKV 137

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	234
225438783	246	PREDICTED: CBS domain-containing protein	0.876	0.833	0.714	1e-77
449445894	239	PREDICTED: CBS domain-containing protein	0.991	0.970	0.655	4e-76
224056130	236	predicted protein [Populus trichocarpa]	0.850	0.843	0.736	8e-76
296082380	172	unnamed protein product [Vitis vinifera]	0.713	0.970	0.844	1e-75
255587643	239	conserved hypothetical protein [Ricinus	0.931	0.912	0.675	1e-75
357482805	224	Inosine-5'-monophosphate dehydrogenase [	0.794	0.830	0.759	1e-75
217075546	224	unknown [Medicago truncatula] gi|3884951	0.794	0.830	0.754	6e-75
15234564	236	cystathionine beta-synthase domain-conta	0.730	0.724	0.801	9e-75
297802578	237	hypothetical protein ARALYDRAFT_491262 [	0.987	0.974	0.629	2e-74
317106695	236	JHL03K20.5 [Jatropha curcas]	0.863	0.855	0.702	4e-74

>gi|225438783|ref|XP_002283079.1| PREDICTED: CBS domain-containing protein CBSX1, chloroplastic-like [Vitis vinifera]

 Score =  295 bits (754), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 153/214 (71%), Positives = 167/214 (78%), Gaps = 9/214 (4%)

Query: 23  SVPHLQLPITV--------ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYT 74
           S PH Q+P T+           S +  R    +  R   A A  G  + NSVP +NG YT
Sbjct: 29  SFPH-QMPCTLLFQPGRKPPVGSTVGSRSERISGIRRSPALAAAGTLMANSVPSKNGVYT 87

Query: 75  VGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSIS 134
           VGDFMT+KEDLH VK TTTV+EALE LVE RITGFPVIDDDWKLVG+VSDYDLLALDSIS
Sbjct: 88  VGDFMTRKEDLHVVKATTTVEEALEILVENRITGFPVIDDDWKLVGLVSDYDLLALDSIS 147

Query: 135 GGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLL 194
           GG   DT +FP V+STWKTFNELQ+LLSKTNGKVVGDLMTPAP+VV E TNLEDAARLLL
Sbjct: 148 GGGLTDTIMFPEVDSTWKTFNELQKLLSKTNGKVVGDLMTPAPVVVRETTNLEDAARLLL 207

Query: 195 ETKYRRLPVVDGYGKLVGLITRGNVVRAALQIKR 228
           ETKYRRLPVVD  GKLVG+ITRGNVVRAALQIKR
Sbjct: 208 ETKYRRLPVVDSDGKLVGIITRGNVVRAALQIKR 241

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445894|ref|XP_004140707.1| PREDICTED: CBS domain-containing protein CBSX1, chloroplastic-like [Cucumis sativus] gi|449486597|ref|XP_004157343.1| PREDICTED: CBS domain-containing protein CBSX1, chloroplastic-like [Cucumis sativus]

 Score =  290 bits (741), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 158/241 (65%), Positives = 184/241 (76%), Gaps = 9/241 (3%)

Query: 1   MSSISIPSCLTLARLNANGVINSVPHLQLPITVATPSHLSKRLRFFTVSREVKA------ 54
           MSSIS+ +   LAR   + + +S         + + + LSK L  F +S    A      
Sbjct: 1   MSSISLSNSHPLARPYPHHLPHSHRQQWCSRPLLSTNSLSK-LHRFGISDRFPARPPLPL 59

Query: 55  -FAHNGVGITNSVPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVID 113
             A +G G+ +S P R GTYTVGDFMT+KE+L+ VK TTTVDEALE LVEKRITGFPV+D
Sbjct: 60  VLASSGAGVVDSFPLR-GTYTVGDFMTRKENLYVVKPTTTVDEALEVLVEKRITGFPVVD 118

Query: 114 DDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLM 173
           DDW LVGVVSDYDLLALDSISGG Q+DT+LFP+V+S+WKTFNE+Q+LL KTNGKVVGDLM
Sbjct: 119 DDWNLVGVVSDYDLLALDSISGGTQSDTNLFPDVDSSWKTFNEIQKLLCKTNGKVVGDLM 178

Query: 174 TPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIKRDGERS 233
           T +PL V E +NLEDAARLLLETKYRRLPVVD  GKLVG+ITRGNVVRAALQIKR  ERS
Sbjct: 179 TSSPLAVRETSNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKRAAERS 238

Query: 234 T 234
           T
Sbjct: 239 T 239

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224056130|ref|XP_002298732.1| predicted protein [Populus trichocarpa] gi|222845990|gb|EEE83537.1| predicted protein [Populus trichocarpa]

 Score =  289 bits (739), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 148/201 (73%), Positives = 163/201 (81%), Gaps = 2/201 (0%)

Query: 35  TPSHLSKRLRFFTVSREV--KAFAHNGVGITNSVPPRNGTYTVGDFMTKKEDLHAVKTTT 92
           TP     RLR  +V R     + A     + NSVP R+G YTVGDFMTKKE L+ VK  T
Sbjct: 35  TPRSKCCRLRSSSVPRSPYRSSVAVALSTVANSVPARSGIYTVGDFMTKKEGLYVVKANT 94

Query: 93  TVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWK 152
           TVDEALE LVEKRITGFPVIDDDW+LVGVVSDYDLLALDSISGG QNDT+LFPNV+S+WK
Sbjct: 95  TVDEALEALVEKRITGFPVIDDDWRLVGVVSDYDLLALDSISGGCQNDTNLFPNVDSSWK 154

Query: 153 TFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVG 212
           TFNELQ+LL K NGK+VGDLMTP PLVV+E TNLEDA RLLLETKYRRLPVVD  GKLVG
Sbjct: 155 TFNELQKLLIKNNGKLVGDLMTPNPLVVYETTNLEDAVRLLLETKYRRLPVVDDDGKLVG 214

Query: 213 LITRGNVVRAALQIKRDGERS 233
           +ITRG++VRAALQIK   ERS
Sbjct: 215 IITRGDIVRAALQIKNATERS 235

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082380|emb|CBI21385.3| unnamed protein product [Vitis vinifera]

 Score =  288 bits (737), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 141/167 (84%), Positives = 151/167 (90%)

Query: 62  ITNSVPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGV 121
           + NSVP +NG YTVGDFMT+KEDLH VK TTTV+EALE LVE RITGFPVIDDDWKLVG+
Sbjct: 1   MANSVPSKNGVYTVGDFMTRKEDLHVVKATTTVEEALEILVENRITGFPVIDDDWKLVGL 60

Query: 122 VSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVH 181
           VSDYDLLALDSISGG   DT +FP V+STWKTFNELQ+LLSKTNGKVVGDLMTPAP+VV 
Sbjct: 61  VSDYDLLALDSISGGGLTDTIMFPEVDSTWKTFNELQKLLSKTNGKVVGDLMTPAPVVVR 120

Query: 182 ENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIKR 228
           E TNLEDAARLLLETKYRRLPVVD  GKLVG+ITRGNVVRAALQIKR
Sbjct: 121 ETTNLEDAARLLLETKYRRLPVVDSDGKLVGIITRGNVVRAALQIKR 167

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255587643|ref|XP_002534340.1| conserved hypothetical protein [Ricinus communis] gi|223525462|gb|EEF28042.1| conserved hypothetical protein [Ricinus communis]

 Score =  288 bits (737), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 152/225 (67%), Positives = 177/225 (78%), Gaps = 7/225 (3%)

Query: 10  LTLARLNANGVINSVPHLQLPITVATPSHLSKRLRFFTV---SREVKAFAHNGVGITNSV 66
           LT  R  A+  + S  H QLP  +++ + +S+RL   +V    R     +  G  + NS 
Sbjct: 16  LTRLRSTASPTVVSFAH-QLPCLLSSAT-VSRRLFHLSVISWPRRSSTISATGTLMANS- 72

Query: 67  PPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYD 126
            P++G YTVGDFMT+KEDL  VK TTTVDEAL+ LVE RITGFPVIDDDWKLVG+VSDYD
Sbjct: 73  -PKSGVYTVGDFMTRKEDLCVVKPTTTVDEALQTLVEHRITGFPVIDDDWKLVGLVSDYD 131

Query: 127 LLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNL 186
           LLALDSISGG + D S+FP V+STWKTFNE+Q+LLSKTNGK+VGDLMTPAP+VV E TNL
Sbjct: 132 LLALDSISGGGRTDNSMFPEVDSTWKTFNEVQKLLSKTNGKLVGDLMTPAPVVVRETTNL 191

Query: 187 EDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIKRDGE 231
           EDAARLLLETKYRRLPVVD  GKLVG+ITRGNVVRAAL+IKRD E
Sbjct: 192 EDAARLLLETKYRRLPVVDAEGKLVGIITRGNVVRAALEIKRDME 236

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357482805|ref|XP_003611689.1| Inosine-5'-monophosphate dehydrogenase [Medicago truncatula] gi|355513024|gb|AES94647.1| Inosine-5'-monophosphate dehydrogenase [Medicago truncatula]

 Score =  288 bits (737), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 142/187 (75%), Positives = 161/187 (86%), Gaps = 1/187 (0%)

Query: 46  FTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKR 105
           F+  R    FA N +   NSVPP+NG YTVGDFMTKK++LH VK TTTVDEAL+ LVE R
Sbjct: 37  FSKLRGSPLFAANTL-TANSVPPKNGVYTVGDFMTKKDELHTVKPTTTVDEALDSLVEHR 95

Query: 106 ITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTN 165
           ITGFPVIDD+WKLVGVVSDYDLLALDSISG  Q D SLFP+V+STWKTFNE+QRLLSKTN
Sbjct: 96  ITGFPVIDDNWKLVGVVSDYDLLALDSISGQGQTDNSLFPDVDSTWKTFNEVQRLLSKTN 155

Query: 166 GKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQ 225
           GKV+G+LMT AP+VV E TNLEDAARLLLETK+RRLPVVD  G+LVG+ITRGNVVRAALQ
Sbjct: 156 GKVIGELMTTAPMVVRETTNLEDAARLLLETKFRRLPVVDAEGRLVGIITRGNVVRAALQ 215

Query: 226 IKRDGER 232
           +KRD ++
Sbjct: 216 MKRDSQK 222

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217075546|gb|ACJ86133.1| unknown [Medicago truncatula] gi|388495112|gb|AFK35622.1| unknown [Medicago truncatula]

 Score =  286 bits (731), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 141/187 (75%), Positives = 160/187 (85%), Gaps = 1/187 (0%)

Query: 46  FTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKR 105
           F+  R    FA N +   NSVPP+NG YTVGDFMTKK++LH VK TTTVDEAL+ LVE R
Sbjct: 37  FSKLRGSPLFAANTL-TANSVPPKNGVYTVGDFMTKKDELHTVKPTTTVDEALDSLVEHR 95

Query: 106 ITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTN 165
           ITGFPVIDD+WKLVGVVSDYDLLALDSISG  Q D SLFP+V+STWKTFNE+QRL SKTN
Sbjct: 96  ITGFPVIDDNWKLVGVVSDYDLLALDSISGQGQTDNSLFPDVDSTWKTFNEVQRLQSKTN 155

Query: 166 GKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQ 225
           GKV+G+LMT AP+VV E TNLEDAARLLLETK+RRLPVVD  G+LVG+ITRGNVVRAALQ
Sbjct: 156 GKVIGELMTTAPMVVRETTNLEDAARLLLETKFRRLPVVDAEGRLVGIITRGNVVRAALQ 215

Query: 226 IKRDGER 232
           +KRD ++
Sbjct: 216 MKRDSQK 222

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15234564|ref|NP_195409.1| cystathionine beta-synthase domain-containing protein [Arabidopsis thaliana] gi|75219197|sp|O23193.2|CBSX1_ARATH RecName: Full=CBS domain-containing protein CBSX1, chloroplastic; AltName: Full=CBS domain-containing protein 2; Short=AtCDCP2; AltName: Full=Protein LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2; Short=AtLEJ2; Flags: Precursor gi|4006881|emb|CAB16799.1| putative protein [Arabidopsis thaliana] gi|7270640|emb|CAB80357.1| putative protein [Arabidopsis thaliana] gi|21537376|gb|AAM61717.1| unknown [Arabidopsis thaliana] gi|28392900|gb|AAO41886.1| unknown protein [Arabidopsis thaliana] gi|28827758|gb|AAO50723.1| unknown protein [Arabidopsis thaliana] gi|332661316|gb|AEE86716.1| cystathionine beta-synthase domain-containing protein [Arabidopsis thaliana]

 Score =  285 bits (730), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 137/171 (80%), Positives = 153/171 (89%)

Query: 62  ITNSVPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGV 121
           +TNS  PR+G YTVG+FMTKKEDLH VK TTTVDEALE LVE RITGFPVID+DWKLVG+
Sbjct: 64  MTNSSSPRSGVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGL 123

Query: 122 VSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVH 181
           VSDYDLLALDSISG  + + S+FP V+STWKTFN +Q+LLSKTNGK+VGDLMTPAPLVV 
Sbjct: 124 VSDYDLLALDSISGSGRTENSMFPEVDSTWKTFNAVQKLLSKTNGKLVGDLMTPAPLVVE 183

Query: 182 ENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIKRDGER 232
           E TNLEDAA++LLETKYRRLPVVD  GKLVG+ITRGNVVRAALQIKR G+R
Sbjct: 184 EKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVVRAALQIKRSGDR 234

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297802578|ref|XP_002869173.1| hypothetical protein ARALYDRAFT_491262 [Arabidopsis lyrata subsp. lyrata] gi|297315009|gb|EFH45432.1| hypothetical protein ARALYDRAFT_491262 [Arabidopsis lyrata subsp. lyrata]

 Score =  284 bits (726), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 151/240 (62%), Positives = 186/240 (77%), Gaps = 9/240 (3%)

Query: 1   MSSISIPSCLTLARLNANGVINSVPH-LQLPITVAT----PSHLSKRLRFFTVSREVKAF 55
           M SIS+   L + RL    ++ S+ H   LPI+ ++    P    +R   F+ S  V AF
Sbjct: 1   MGSISLSYSLPITRL---PLLTSLNHQCFLPISSSSFPLLPLSNRRRSSTFSPSIAVSAF 57

Query: 56  AHNGVGITN-SVPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDD 114
                 + N SVP +NG YTVGDFMT +++LH VK +T+VD+ALE LVEK++TG PVIDD
Sbjct: 58  FAAPASVNNNSVPAKNGGYTVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDD 117

Query: 115 DWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMT 174
           +W LVGVVSDYDLLALDSISG +QNDT+LFP+V+STWKTFNELQ+L+SKT GKVVGDLMT
Sbjct: 118 NWTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDSTWKTFNELQKLISKTYGKVVGDLMT 177

Query: 175 PAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIKRDGERST 234
           P+PLVV ++TNLEDAARLLLETK+RRLPVVD  GKL+G++TRGNVVRAALQIKR+ E ST
Sbjct: 178 PSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVRAALQIKRETENST 237

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317106695|dbj|BAJ53196.1| JHL03K20.5 [Jatropha curcas]

 Score =  283 bits (724), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 144/205 (70%), Positives = 165/205 (80%), Gaps = 3/205 (1%)

Query: 28  QLPITVAT-PSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKKEDLH 86
           QLP  +++ P      L   +  R   A A +G  + +S  P++G YTVGDFMT+KEDL 
Sbjct: 31  QLPCLLSSRPGRRLLPLSAISHPRRSSAIAASGAFVASS--PKSGVYTVGDFMTRKEDLQ 88

Query: 87  AVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPN 146
            VK TTTVDEAL+ LVE RITGFPVIDDDWKLVG+VSDYDLLALDSISGG + D S+FP 
Sbjct: 89  VVKPTTTVDEALQTLVEHRITGFPVIDDDWKLVGLVSDYDLLALDSISGGGRTDNSMFPE 148

Query: 147 VNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDG 206
           V+STWKTFNE+Q+LLSKTNGK+VGDLMTPAP+VV E TNLEDAARLLLETKYRRLPVVD 
Sbjct: 149 VDSTWKTFNEVQKLLSKTNGKLVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDS 208

Query: 207 YGKLVGLITRGNVVRAALQIKRDGE 231
            GKLVG+ITRGNVVRAAL+IKR  E
Sbjct: 209 EGKLVGIITRGNVVRAALEIKRSIE 233

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	234
TAIR|locus:2114970	236	LEJ2 "AT4G36910" [Arabidopsis	0.961	0.953	0.652	5.3e-72
TAIR|locus:2124276	238	LEJ1 "AT4G34120" [Arabidopsis	0.987	0.970	0.643	1.4e-71
UNIPROTKB|Q47ZU9	147	CPS_2970 "CBS domain protein"	0.290	0.462	0.442	9.7e-12
TIGR_CMR|CPS_2970	147	CPS_2970 "CBS domain protein"	0.290	0.462	0.442	9.7e-12
UNIPROTKB|Q3AFN9	210	acuB "Acetoin utilization prot	0.264	0.295	0.484	1.4e-11
TIGR_CMR|CHY_0173	210	CHY_0173 "acetoin utilization	0.264	0.295	0.484	1.4e-11
UNIPROTKB|Q74BN1	144	GSU2010 "CBS domain pair-conta	0.311	0.506	0.375	1.6e-11
TIGR_CMR|GSU_2010	144	GSU_2010 "CBS domain protein"	0.311	0.506	0.375	1.6e-11
UNIPROTKB|Q74C73	149	GSU1801 "CBS domain pair-conta	0.611	0.959	0.310	5.8e-11
TIGR_CMR|GSU_1801	149	GSU_1801 "CBS domain protein"	0.611	0.959	0.310	5.8e-11

TAIR|locus:2114970 LEJ2 "AT4G36910" [Arabidopsis thaliana (taxid:3702)]

 Score = 728 (261.3 bits), Expect = 5.3e-72, P = 5.3e-72
 Identities = 152/233 (65%), Positives = 179/233 (76%)

Query:     5 SIPSCLTLARLNANGVINSVPHLQLPITVAT-PSHLSKRLRFFTVSREVKAFAHNGVG-- 61
             S+P   T  R +++    S P+L LP  ++  P H     R F     + + A +  G  
Sbjct:     7 SVPLSFTPLRASSSP---SSPYLLLPRFLSVQPCHKFTFSRSFPSKSRIPS-ASSAAGST 62

Query:    62 -ITNSVPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVG 120
              +TNS  PR+G YTVG+FMTKKEDLH VK TTTVDEALE LVE RITGFPVID+DWKLVG
Sbjct:    63 LMTNSSSPRSGVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVG 122

Query:   121 VVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVV 180
             +VSDYDLLALDSISG  + + S+FP V+STWKTFN +Q+LLSKTNGK+VGDLMTPAPLVV
Sbjct:   123 LVSDYDLLALDSISGSGRTENSMFPEVDSTWKTFNAVQKLLSKTNGKLVGDLMTPAPLVV 182

Query:   181 HENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIKRDGERS 233
              E TNLEDAA++LLETKYRRLPVVD  GKLVG+ITRGNVVRAALQIKR G+R+
Sbjct:   183 EEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVVRAALQIKRSGDRN 235

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0045454 "cell redox homeostasis" evidence=IDA

TAIR|locus:2124276 LEJ1 "AT4G34120" [Arabidopsis thaliana (taxid:3702)]

 Score = 724 (259.9 bits), Expect = 1.4e-71, P = 1.4e-71
 Identities = 155/241 (64%), Positives = 190/241 (78%)

Query:     1 MSSISIPSCLTLARLNANGVINSVPHLQ-LPITVATPS--HLSKRLRF--FTVSREVKAF 55
             M SIS+ + + + RL    ++ S+ H   LPI+ ++ S   LS R R   F+ S  V AF
Sbjct:     1 MGSISLSNSMPITRLP---LLTSLYHQSFLPISSSSFSLLPLSNRRRSSTFSPSITVSAF 57

Query:    56 --AHNGVGITNSVPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVID 113
               A   V   NSVP +NG YTVGDFMT +++LH VK +T+VD+ALE LVEK++TG PVID
Sbjct:    58 FAAPASVNNNNSVPAKNGGYTVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVID 117

Query:   114 DDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLM 173
             D+W LVGVVSDYDLLALDSISG +QNDT+LFP+V+STWKTFNELQ+L+SKT GKVVGDLM
Sbjct:   118 DNWTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDSTWKTFNELQKLISKTYGKVVGDLM 177

Query:   174 TPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIKRDGERS 233
             TP+PLVV ++TNLEDAARLLLETK+RRLPVVD  GKL+G++TRGNVVRAALQIKR+ E S
Sbjct:   178 TPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVRAALQIKRETENS 237

Query:   234 T 234
             T
Sbjct:   238 T 238

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0045454 "cell redox homeostasis" evidence=IDA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

UNIPROTKB|Q47ZU9 CPS_2970 "CBS domain protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 113 (44.8 bits), Expect = 9.7e-12, Sum P(2) = 9.7e-12
 Identities = 31/70 (44%), Positives = 39/70 (55%)

Query:   164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAA 223
             T G++V D MT     +  NTNL D A   L    R LPVV+G GK+VGL+ R  V+   
Sbjct:    68 TIGELVRDRMTTEVESIGTNTNLVDVAEKFLHNNRRVLPVVEG-GKVVGLVQRRGVLEQL 126

Query:   224 L-QIKRDGER 232
             L QI   GE+
Sbjct:   127 LEQIDSKGEQ 136

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CPS_2970 CPS_2970 "CBS domain protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 113 (44.8 bits), Expect = 9.7e-12, Sum P(2) = 9.7e-12
 Identities = 31/70 (44%), Positives = 39/70 (55%)

Query:   164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAA 223
             T G++V D MT     +  NTNL D A   L    R LPVV+G GK+VGL+ R  V+   
Sbjct:    68 TIGELVRDRMTTEVESIGTNTNLVDVAEKFLHNNRRVLPVVEG-GKVVGLVQRRGVLEQL 126

Query:   224 L-QIKRDGER 232
             L QI   GE+
Sbjct:   127 LEQIDSKGEQ 136

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q3AFN9 acuB "Acetoin utilization protein AcuB" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 115 (45.5 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
 Identities = 32/66 (48%), Positives = 41/66 (62%)

Query:    75 VGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDL-LALDSI 133
             V D MT+  +L  VK+T T+ EA+ +  EKRI   PV+DD  KLVG+VSD DL  A  S 
Sbjct:     3 VKDIMTR--ELITVKSTDTIREAMAKGHEKRIRHLPVVDDG-KLVGIVSDRDLRYACPSP 59

Query:   134 SGGNQN 139
               G +N
Sbjct:    60 FTGEKN 65

GO:0003674 "molecular_function" evidence=ND

GO:0006091 "generation of precursor metabolites and energy" evidence=ISS

GO:0045150 "acetoin catabolic process" evidence=ISS

TIGR_CMR|CHY_0173 CHY_0173 "acetoin utilization protein AcuB" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 115 (45.5 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
 Identities = 32/66 (48%), Positives = 41/66 (62%)

Query:    75 VGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDL-LALDSI 133
             V D MT+  +L  VK+T T+ EA+ +  EKRI   PV+DD  KLVG+VSD DL  A  S 
Sbjct:     3 VKDIMTR--ELITVKSTDTIREAMAKGHEKRIRHLPVVDDG-KLVGIVSDRDLRYACPSP 59

Query:   134 SGGNQN 139
               G +N
Sbjct:    60 FTGEKN 65

GO:0003674 "molecular_function" evidence=ND

GO:0006091 "generation of precursor metabolites and energy" evidence=ISS

GO:0045150 "acetoin catabolic process" evidence=ISS

UNIPROTKB|Q74BN1 GSU2010 "CBS domain pair-containing protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 113 (44.8 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
 Identities = 30/80 (37%), Positives = 47/80 (58%)

Query:   150 TWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGK 209
             TW    E+  +LSKT+   V + M P P  V  +T+L +AA+LL + K   + VVD   +
Sbjct:    66 TW----EVHYILSKTS---VTEAMNPKPYKVKPDTDLTEAAQLLHDRKLNGVLVVDDNDR 118

Query:   210 LVGLITRGNVVRAALQIKRD 229
             LVG++T  N + A ++I +D
Sbjct:   119 LVGILTVTNALEALIEICKD 138

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_2010 GSU_2010 "CBS domain protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 113 (44.8 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
 Identities = 30/80 (37%), Positives = 47/80 (58%)

Query:   150 TWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGK 209
             TW    E+  +LSKT+   V + M P P  V  +T+L +AA+LL + K   + VVD   +
Sbjct:    66 TW----EVHYILSKTS---VTEAMNPKPYKVKPDTDLTEAAQLLHDRKLNGVLVVDDNDR 118

Query:   210 LVGLITRGNVVRAALQIKRD 229
             LVG++T  N + A ++I +D
Sbjct:   119 LVGILTVTNALEALIEICKD 138

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q74C73 GSU1801 "CBS domain pair-containing protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
 Identities = 46/148 (31%), Positives = 74/148 (50%)

Query:    74 TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSI 133
             TV D MT   ++   +  TT+ E  E   + RI   PV+D+   L G+V++ DL+  D  
Sbjct:     3 TVRDIMTT--NVVTARRETTIRELAELFSKYRIGSIPVVDEAGNLAGIVTESDLIEQDK- 59

Query:   134 SGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLL 193
             S       SLF  V    ++  + +R + K  G+  GD+ T     V   T +   A ++
Sbjct:    60 SLHIPTVISLFDWVIYL-ESAKKFEREIQKVTGQTAGDIYTTEVESVTPETPVSTVADIM 118

Query:   194 LETKYRRLPVVDGYGKLVGLITRGNVVR 221
                K   LPVV+G  KLVG+++R +++R
Sbjct:   119 ANKKLHTLPVVEGK-KLVGIVSRIDLIR 145

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_1801 GSU_1801 "CBS domain protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
 Identities = 46/148 (31%), Positives = 74/148 (50%)

Query:    74 TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSI 133
             TV D MT   ++   +  TT+ E  E   + RI   PV+D+   L G+V++ DL+  D  
Sbjct:     3 TVRDIMTT--NVVTARRETTIRELAELFSKYRIGSIPVVDEAGNLAGIVTESDLIEQDK- 59

Query:   134 SGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLL 193
             S       SLF  V    ++  + +R + K  G+  GD+ T     V   T +   A ++
Sbjct:    60 SLHIPTVISLFDWVIYL-ESAKKFEREIQKVTGQTAGDIYTTEVESVTPETPVSTVADIM 118

Query:   194 LETKYRRLPVVDGYGKLVGLITRGNVVR 221
                K   LPVV+G  KLVG+++R +++R
Sbjct:   119 ANKKLHTLPVVEGK-KLVGIVSRIDLIR 145

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9C5D0	CBSX2_ARATH	No assigned EC number	0.7142	0.8290	0.8151	no	no
O23193	CBSX1_ARATH	No assigned EC number	0.8011	0.7307	0.7245	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00019540001	SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (213 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00023053001	SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (430 aa)	•						•		0.707
	GSVIVG00036526001	RecName- Full=N-acetyl-gamma-glutamyl-phosphate reductase; EC=1.2.1.38; (398 aa)	•								0.556
	GSVIVG00000640001	RecName- Full=DNA topoisomerase 2; EC=5.99.1.3; (661 aa)	•								0.553
	GSVIVG00025551001	RecName- Full=Adenylosuccinate synthetase; EC=6.3.4.4;; Plays an important role in the de novo [...] (489 aa)							•		0.474

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	234
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	1e-25
cd04636	132	cd04636, CBS_pair_23, The CBS domain, named after	2e-25
cd04629	114	cd04629, CBS_pair_16, The CBS domain, named after	2e-24
cd04586	135	cd04586, CBS_pair_BON_assoc, This cd contains two	1e-22
cd04803	122	cd04803, CBS_pair_15, The CBS domain, named after	3e-21
cd04634	143	cd04634, CBS_pair_21, The CBS domain, named after	6e-21
cd04585	122	cd04585, CBS_pair_ACT_assoc2, This cd contains two	9e-21
cd04584	121	cd04584, CBS_pair_ACT_assoc, This cd contains two	3e-19
cd04601	110	cd04601, CBS_pair_IMPDH, This cd contains two tand	5e-19
PRK05567	486	PRK05567, PRK05567, inosine 5'-monophosphate dehyd	1e-18
cd04612	111	cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd cont	1e-18
cd04638	106	cd04638, CBS_pair_25, The CBS domain, named after	2e-18
cd04600	124	cd04600, CBS_pair_HPP_assoc, This cd contains two	5e-18
COG0517	117	COG0517, COG0517, FOG: CBS domain [General functio	5e-18
cd04623	113	cd04623, CBS_pair_10, The CBS domain, named after	1e-16
cd04613	114	cd04613, CBS_pair_SpoIVFB_EriC_assoc2, This cd con	1e-16
COG2524	294	COG2524, COG2524, Predicted transcriptional regula	4e-16
cd04622	113	cd04622, CBS_pair_9, The CBS domain, named after h	8e-16
pfam00571	57	pfam00571, CBS, CBS domain	1e-15
cd04631	125	cd04631, CBS_pair_18, The CBS domain, named after	9e-15
COG3448	382	COG3448, COG3448, CBS-domain-containing membrane p	3e-14
cd04610	107	cd04610, CBS_pair_ParBc_assoc, This cd contains tw	4e-14
cd04606	109	cd04606, CBS_pair_Mg_transporter, This cd contains	7e-14
cd04637	122	cd04637, CBS_pair_24, The CBS domain, named after	3e-13
TIGR01302	450	TIGR01302, IMP_dehydrog, inosine-5'-monophosphate	7e-13
cd04596	108	cd04596, CBS_pair_DRTGG_assoc, This cd contains tw	2e-12
cd04621	135	cd04621, CBS_pair_8, The CBS domain, named after h	4e-12
COG4109	432	COG4109, COG4109, Predicted transcriptional regula	5e-12
cd04633	121	cd04633, CBS_pair_20, The CBS domain, named after	5e-12
pfam00571	57	pfam00571, CBS, CBS domain	6e-12
cd04587	113	cd04587, CBS_pair_CAP-ED_DUF294_PBI_assoc, This cd	1e-11
cd04643	116	cd04643, CBS_pair_30, The CBS domain, named after	2e-11
cd04611	111	cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd co	6e-11
cd04588	110	cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This c	6e-11
pfam00478	467	pfam00478, IMPDH, IMP dehydrogenase / GMP reductas	7e-11
cd04583	109	cd04583, CBS_pair_ABC_OpuCA_assoc2, This cd contai	7e-11
cd04604	114	cd04604, CBS_pair_KpsF_GutQ_assoc, This cd contain	9e-11
cd04802	112	cd04802, CBS_pair_3, The CBS domain, named after h	1e-10
cd04642	126	cd04642, CBS_pair_29, The CBS domain, named after	4e-10
COG0517	117	COG0517, COG0517, FOG: CBS domain [General functio	5e-10
PTZ00314	495	PTZ00314, PTZ00314, inosine-5'-monophosphate dehyd	5e-10
cd04605	110	cd04605, CBS_pair_MET2_assoc, This cd contains two	6e-10
cd04639	111	cd04639, CBS_pair_26, The CBS domain, named after	9e-10
smart00116	49	smart00116, CBS, Domain in cystathionine beta-synt	9e-10
cd04590	111	cd04590, CBS_pair_CorC_HlyC_assoc, This cd contain	1e-09
cd04602	114	cd04602, CBS_pair_IMPDH_2, This cd contains two ta	2e-09
cd04593	115	cd04593, CBS_pair_EriC_assoc_bac_arch, This cd con	2e-09
cd04635	122	cd04635, CBS_pair_22, The CBS domain, named after	2e-09
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	3e-09
COG2239	451	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains	5e-09
cd04599	105	cd04599, CBS_pair_GGDEF_assoc2, This cd contains t	5e-09
cd04624	112	cd04624, CBS_pair_11, The CBS domain, named after	1e-08
cd04615	113	cd04615, CBS_pair_2, The CBS domain, named after h	1e-08
COG1253	429	COG1253, TlyC, Hemolysins and related proteins con	2e-08
cd04593	115	cd04593, CBS_pair_EriC_assoc_bac_arch, This cd con	3e-08
cd04625	112	cd04625, CBS_pair_12, The CBS domain, named after	3e-08
cd04800	111	cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This c	5e-08
cd04585	122	cd04585, CBS_pair_ACT_assoc2, This cd contains two	6e-08
cd04586	135	cd04586, CBS_pair_BON_assoc, This cd contains two	7e-08
cd04585	122	cd04585, CBS_pair_ACT_assoc2, This cd contains two	9e-08
cd04801	114	cd04801, CBS_pair_M50_like, This cd contains two t	9e-08
cd04631	125	cd04631, CBS_pair_18, The CBS domain, named after	1e-07
PRK14869	546	PRK14869, PRK14869, putative manganese-dependent i	1e-07
cd04609	110	cd04609, CBS_pair_PALP_assoc2, This cd contains tw	1e-07
cd04595	110	cd04595, CBS_pair_DHH_polyA_Pol_assoc, This cd con	2e-07
cd04636	132	cd04636, CBS_pair_23, The CBS domain, named after	3e-07
pfam00478	467	pfam00478, IMPDH, IMP dehydrogenase / GMP reductas	3e-07
PRK07807	479	PRK07807, PRK07807, inosine 5-monophosphate dehydr	3e-07
cd04607	113	cd04607, CBS_pair_NTP_transferase_assoc, This cd c	3e-07
cd04584	121	cd04584, CBS_pair_ACT_assoc, This cd contains two	4e-07
PRK14869	546	PRK14869, PRK14869, putative manganese-dependent i	4e-07
smart00116	49	smart00116, CBS, Domain in cystathionine beta-synt	5e-07
cd04598	119	cd04598, CBS_pair_GGDEF_assoc, This cd contains tw	7e-07
cd04636	132	cd04636, CBS_pair_23, The CBS domain, named after	1e-06
PRK05567	486	PRK05567, PRK05567, inosine 5'-monophosphate dehyd	1e-06
cd04605	110	cd04605, CBS_pair_MET2_assoc, This cd contains two	1e-06
TIGR00393	268	TIGR00393, kpsF, KpsF/GutQ family protein	1e-06
COG3620	187	COG3620, COG3620, Predicted transcriptional regula	3e-06
TIGR01302	450	TIGR01302, IMP_dehydrog, inosine-5'-monophosphate	4e-06
cd04630	114	cd04630, CBS_pair_17, The CBS domain, named after	4e-06
COG0517	117	COG0517, COG0517, FOG: CBS domain [General functio	5e-06
PRK14869	546	PRK14869, PRK14869, putative manganese-dependent i	5e-06
cd04604	114	cd04604, CBS_pair_KpsF_GutQ_assoc, This cd contain	6e-06
cd04601	110	cd04601, CBS_pair_IMPDH, This cd contains two tand	7e-06
cd04622	113	cd04622, CBS_pair_9, The CBS domain, named after h	7e-06
cd04595	110	cd04595, CBS_pair_DHH_polyA_Pol_assoc, This cd con	7e-06
cd04641	120	cd04641, CBS_pair_28, The CBS domain, named after	7e-06
cd04623	113	cd04623, CBS_pair_10, The CBS domain, named after	8e-06
PLN02274	505	PLN02274, PLN02274, inosine-5'-monophosphate dehyd	8e-06
cd04600	124	cd04600, CBS_pair_HPP_assoc, This cd contains two	1e-05
cd04637	122	cd04637, CBS_pair_24, The CBS domain, named after	1e-05
cd04612	111	cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd cont	2e-05
PTZ00314	495	PTZ00314, PTZ00314, inosine-5'-monophosphate dehyd	2e-05
cd04633	121	cd04633, CBS_pair_20, The CBS domain, named after	4e-05
cd04803	122	cd04803, CBS_pair_15, The CBS domain, named after	5e-05
cd04605	110	cd04605, CBS_pair_MET2_assoc, This cd contains two	5e-05
COG2905	610	COG2905, COG2905, Predicted signal-transduction pr	6e-05
cd04634	143	cd04634, CBS_pair_21, The CBS domain, named after	7e-05
cd04583	109	cd04583, CBS_pair_ABC_OpuCA_assoc2, This cd contai	7e-05
cd04615	113	cd04615, CBS_pair_2, The CBS domain, named after h	8e-05
cd04639	111	cd04639, CBS_pair_26, The CBS domain, named after	9e-05
cd04600	124	cd04600, CBS_pair_HPP_assoc, This cd contains two	1e-04
cd04602	114	cd04602, CBS_pair_IMPDH_2, This cd contains two ta	1e-04
TIGR01137	454	TIGR01137, cysta_beta, cystathionine beta-synthase	1e-04
cd04634	143	cd04634, CBS_pair_21, The CBS domain, named after	2e-04
cd04623	113	cd04623, CBS_pair_10, The CBS domain, named after	2e-04
cd04611	111	cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd co	2e-04
PRK07107	502	PRK07107, PRK07107, inosine 5-monophosphate dehydr	2e-04
PRK01862	574	PRK01862, PRK01862, putative voltage-gated ClC-typ	2e-04
cd04586	135	cd04586, CBS_pair_BON_assoc, This cd contains two	3e-04
COG3448	382	COG3448, COG3448, CBS-domain-containing membrane p	3e-04
TIGR01303	475	TIGR01303, IMP_DH_rel_1, IMP dehydrogenase family	3e-04
cd04597	113	cd04597, CBS_pair_DRTGG_assoc2, This cd contains t	3e-04
cd04601	110	cd04601, CBS_pair_IMPDH, This cd contains two tand	4e-04
cd04594	104	cd04594, CBS_pair_EriC_assoc_archaea, This cd cont	4e-04
cd04629	114	cd04629, CBS_pair_16, The CBS domain, named after	5e-04
cd04801	114	cd04801, CBS_pair_M50_like, This cd contains two t	5e-04
cd04591	105	cd04591, CBS_pair_EriC_assoc_euk_bac, This cd cont	6e-04
cd04803	122	cd04803, CBS_pair_15, The CBS domain, named after	7e-04
cd04587	113	cd04587, CBS_pair_CAP-ED_DUF294_PBI_assoc, This cd	0.001
cd04643	116	cd04643, CBS_pair_30, The CBS domain, named after	0.001
cd04617	118	cd04617, CBS_pair_4, The CBS domain, named after h	0.001
TIGR01186	363	TIGR01186, proV, glycine betaine/L-proline transpo	0.001
TIGR00400	449	TIGR00400, mgtE, Mg2+ transporter (mgtE)	0.001
cd04635	122	cd04635, CBS_pair_22, The CBS domain, named after	0.002
cd04800	111	cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This c	0.002
PRK14869	546	PRK14869, PRK14869, putative manganese-dependent i	0.002
cd04582	106	cd04582, CBS_pair_ABC_OpuCA_assoc, This cd contain	0.002
PRK11543	321	PRK11543, gutQ, D-arabinose 5-phosphate isomerase;	0.003
PRK11543	321	PRK11543, gutQ, D-arabinose 5-phosphate isomerase;	0.004

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 96.0 bits (239), Expect = 1e-25
 Identities = 52/140 (37%), Positives = 74/140 (52%), Gaps = 27/140 (19%)

Query: 83  EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTS 142
            D+  V    TV EAL  ++E  I+G PV+DDD +LVG+V++ DLL   +  G       
Sbjct: 1   RDVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGG------- 53

Query: 143 LFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLP 202
                                     VGD+MT   + V  +T+LE+AA L+LE   RRLP
Sbjct: 54  --------------------LDPLVTVGDVMTRDVVTVSPDTSLEEAAELMLEHGIRRLP 93

Query: 203 VVDGYGKLVGLITRGNVVRA 222
           VVD  G+LVG++TR +++RA
Sbjct: 94  VVDDEGRLVGIVTRSDILRA 113

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|240007 cd04636, CBS_pair_23, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 96.6 bits (241), Expect = 2e-25
 Identities = 46/140 (32%), Positives = 79/140 (56%), Gaps = 8/140 (5%)

Query: 83  EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTS 142
           +D+  VK   T+ + +E L+  +I+G PV+D++ ++VG+VS+ DL+              
Sbjct: 1   KDVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLI----RKIYKGKGLF 56

Query: 143 LFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLP 202
               + S         + L    GK V ++MT   + V E+T +ED AR++ +   +RLP
Sbjct: 57  YVTLLYSVIFLDESKIKKLL---GKKVEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLP 113

Query: 203 VVDGYGKLVGLITRGNVVRA 222
           VVD  GKLVG+I+RG+++R+
Sbjct: 114 VVDD-GKLVGIISRGDIIRS 132

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 132

>gnl|CDD|240000 cd04629, CBS_pair_16, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 93.4 bits (233), Expect = 2e-24
 Identities = 43/139 (30%), Positives = 69/139 (49%), Gaps = 26/139 (18%)

Query: 84  DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSL 143
           +        +V EA+E+L++ +I+G PV+DD+  LVG +S+ D L    +   + +    
Sbjct: 2   NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLK--QLLESSYHCDG- 58

Query: 144 FPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPV 203
                                    V D+MT   L V  + ++ D A+L+L+ K +R PV
Sbjct: 59  ----------------------VATVRDIMTTEVLTVSPDDSIVDLAQLMLKAKPKRYPV 96

Query: 204 VDGYGKLVGLITRGNVVRA 222
           VD  GKLVG I+R +V+RA
Sbjct: 97  VDD-GKLVGQISRRDVLRA 114

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 114

>gnl|CDD|239959 cd04586, CBS_pair_BON_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

 Score = 89.2 bits (222), Expect = 1e-22
 Identities = 46/131 (35%), Positives = 80/131 (61%), Gaps = 6/131 (4%)

Query: 92  TTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTW 151
           T+V EA   +++  I+G PV+DDD +LVG+VS+ DLL    +  G +   + + ++    
Sbjct: 11  TSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAEL--GTERRRARWLDL---L 65

Query: 152 KTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLV 211
               EL     +++G+ V D+MT   + V E+T L + A L+ E + +R+PVV G G+LV
Sbjct: 66  AGAEELAAAFVRSHGRKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVRG-GRLV 124

Query: 212 GLITRGNVVRA 222
           G+++R +++RA
Sbjct: 125 GIVSRADLLRA 135

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 135

>gnl|CDD|240116 cd04803, CBS_pair_15, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 85.0 bits (211), Expect = 3e-21
 Identities = 42/139 (30%), Positives = 68/139 (48%), Gaps = 18/139 (12%)

Query: 84  DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSL 143
            +  +    ++ +A E + E RI   PV+++D KLVG+++  DLL   ++S  + N    
Sbjct: 2   PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLR-AALSSLSDNGEES 60

Query: 144 FPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPV 203
                            L+K     V ++M    L V  +T L +AA +++E K   LPV
Sbjct: 61  -----------------LTKERDVPVAEVMKTDVLTVTPDTPLREAAEIMVENKIGCLPV 103

Query: 204 VDGYGKLVGLITRGNVVRA 222
           VD  G LVG+ITR + +R 
Sbjct: 104 VDDKGTLVGIITRSDFLRL 122

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|240005 cd04634, CBS_pair_21, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 85.1 bits (211), Expect = 6e-21
 Identities = 47/140 (33%), Positives = 75/140 (53%), Gaps = 7/140 (5%)

Query: 88  VKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISG--GNQNDTSLFP 145
                T+ +A   L E +I+G PV+D   KLVG+VS+ D+L L       GN    S   
Sbjct: 6   CNADDTISDAARLLRENKISGAPVLDGG-KLVGIVSESDILKLLVTHDPSGNLWLPSPLE 64

Query: 146 NVNSTWKTF---NELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLP 202
            +    + F    E +R L+      V D+MT   + +  + ++EDAA L++  K +RLP
Sbjct: 65  LIELPLREFINWEETKRALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLP 124

Query: 203 VVDGYGKLVGLITRGNVVRA 222
           VV+  G+LVG++TRG+++  
Sbjct: 125 VVED-GRLVGIVTRGDIIEG 143

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 143

>gnl|CDD|239958 cd04585, CBS_pair_ACT_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 83.8 bits (208), Expect = 9e-21
 Identities = 56/140 (40%), Positives = 77/140 (55%), Gaps = 18/140 (12%)

Query: 83  EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTS 142
           ++   V   T++ EAL+ + E  I   PV+D   KLVG+V+D DL  L S S      T+
Sbjct: 1   KNPITVTPDTSLMEALKLMKENSIRRLPVVDRG-KLVGIVTDRDL-KLASPSKA----TT 54

Query: 143 LFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLP 202
           L       W    EL  LLSK     V D+MT  P+ V  + ++E+AA L+LE K   LP
Sbjct: 55  L-----DIW----ELYYLLSKIK---VSDIMTRDPITVSPDASVEEAAELMLERKISGLP 102

Query: 203 VVDGYGKLVGLITRGNVVRA 222
           VVD  G+LVG+IT  ++ RA
Sbjct: 103 VVDDQGRLVGIITESDLFRA 122

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 122

>gnl|CDD|239957 cd04584, CBS_pair_ACT_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 79.6 bits (197), Expect = 3e-19
 Identities = 46/135 (34%), Positives = 72/135 (53%), Gaps = 19/135 (14%)

Query: 88  VKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNV 147
           +  TTT+ EALE + E +I   PV+D++ +LVG+V+D DL              S F  +
Sbjct: 6   ITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLR---------DASPSPFTTL 56

Query: 148 NSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGY 207
           +      +EL  LL       V ++MT   + VH    +E+AA L+ E +   LPVV+  
Sbjct: 57  SE-----HELYLLLKMP----VKEIMTKDVITVHPLDTVEEAALLMREHRIGCLPVVED- 106

Query: 208 GKLVGLITRGNVVRA 222
           G+LVG+IT  +++R 
Sbjct: 107 GRLVGIITETDLLRT 121

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 121

>gnl|CDD|239974 cd04601, CBS_pair_IMPDH, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

 Score = 78.7 bits (195), Expect = 5e-19
 Identities = 48/129 (37%), Positives = 61/129 (47%), Gaps = 33/129 (25%)

Query: 88  VKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNV 147
           V    TV EALE + E  I+G PV+DDD KLVG+V++ DL     +              
Sbjct: 7   VSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRFETDLD------------- 53

Query: 148 NSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHE-NTNLEDAARLLLETKYRRLPVVDG 206
                              K V ++MTP  L+     T+LE+A  LL E K  +LPVVD 
Sbjct: 54  -------------------KPVSEVMTPENLLTTVEGTSLEEALELLHEHKIEKLPVVDD 94

Query: 207 YGKLVGLIT 215
            GKL GLIT
Sbjct: 95  EGKLKGLIT 103

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. Length = 110

>gnl|CDD|235507 PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed

 Score = 83.7 bits (208), Expect = 1e-18
 Identities = 43/134 (32%), Positives = 62/134 (46%), Gaps = 33/134 (24%)

Query: 83  EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTS 142
            D   V   TT+ EAL  +    I+G PV+D++ KLVG++++ D+               
Sbjct: 95  TDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDV--------------- 139

Query: 143 LFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLV-VHENTNLEDAARLLLETKYRRL 201
                           R  +  +  V  ++MT   LV V E T LE+A  LL E +  +L
Sbjct: 140 ----------------RFETDLSQPV-SEVMTKERLVTVPEGTTLEEALELLHEHRIEKL 182

Query: 202 PVVDGYGKLVGLIT 215
           PVVD  G+L GLIT
Sbjct: 183 PVVDDNGRLKGLIT 196

Length = 486

>gnl|CDD|239985 cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 77.7 bits (192), Expect = 1e-18
 Identities = 43/139 (30%), Positives = 65/139 (46%), Gaps = 29/139 (20%)

Query: 84  DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSL 143
           D+  V    TVDE L  +  +R  G+PV+DD  +LVG+V    L  +  +    +  T L
Sbjct: 2   DVVTVPVDLTVDEVLALMFGERHRGYPVVDDG-RLVGIV---TLADIRRVPAEGREATVL 57

Query: 144 FPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPV 203
                                    VGD+MT  P+    +  L DA + + E    RLPV
Sbjct: 58  -------------------------VGDVMTRDPVTASPDETLRDALKRMAERDIGRLPV 92

Query: 204 VDGYGKLVGLITRGNVVRA 222
           VD  G+LVG+++R +++RA
Sbjct: 93  VDDSGRLVGIVSRSDLLRA 111

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|240009 cd04638, CBS_pair_25, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 77.4 bits (191), Expect = 2e-18
 Identities = 44/140 (31%), Positives = 69/140 (49%), Gaps = 34/140 (24%)

Query: 83  EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTS 142
           E++  V    T D+ LE L E +++G PV+    +LVG+++  DLL              
Sbjct: 1   ENVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLL-------------- 46

Query: 143 LFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLP 202
                    +   E Q  L          LMT  P  V  + ++++AA+L++E   RR+P
Sbjct: 47  ---------RNPEEEQLAL----------LMTRDPPTVSPDDDVKEAAKLMVENNIRRVP 87

Query: 203 VVDGYGKLVGLITRGNVVRA 222
           VVD  GKLVG++T  ++VRA
Sbjct: 88  VVDD-GKLVGIVTVADIVRA 106

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 106

>gnl|CDD|239973 cd04600, CBS_pair_HPP_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

 Score = 76.9 bits (190), Expect = 5e-18
 Identities = 39/139 (28%), Positives = 66/139 (47%), Gaps = 17/139 (12%)

Query: 84  DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSL 143
           D+  V   T+++EA   L   RI   PV+D D +LVG+V+  DLL          +    
Sbjct: 3   DVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRH-----ARPDGRRP 57

Query: 144 FPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPV 203
                          RL  +   + VGD+M+P  + V  +T + +   LL +  +  +PV
Sbjct: 58  L------------RGRLRGRDKPETVGDIMSPPVVTVRPDTPIAELVPLLADGGHHHVPV 105

Query: 204 VDGYGKLVGLITRGNVVRA 222
           VD   +LVG++T+ +++ A
Sbjct: 106 VDEDRRLVGIVTQTDLIAA 124

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 124

>gnl|CDD|223591 COG0517, COG0517, FOG: CBS domain [General function prediction only]

 Score = 76.4 bits (188), Expect = 5e-18
 Identities = 50/148 (33%), Positives = 75/148 (50%), Gaps = 33/148 (22%)

Query: 75  VGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSIS 134
           V D MTK  D+  VK  T+V +AL  + E  ++  PV+DD  KLVG++++ D+L     +
Sbjct: 1   VKDIMTK--DVITVKPDTSVRDALLLMSENGVSAVPVVDDG-KLVGIITERDILRA-LAA 56

Query: 135 GGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLL 194
           GG +                              V ++MT   + V  +T LE+A  L++
Sbjct: 57  GGKRLLP---------------------------VKEVMTKPVVTVDPDTPLEEALELMV 89

Query: 195 E-TKYRRLPVVD-GYGKLVGLITRGNVV 220
           E  K RRLPVVD   GKLVG+IT  +++
Sbjct: 90  ERHKIRRLPVVDDDGGKLVGIITLSDIL 117

Length = 117

>gnl|CDD|239995 cd04623, CBS_pair_10, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 72.9 bits (180), Expect = 1e-16
 Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 27/139 (19%)

Query: 84  DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSL 143
           D+  V+   TV EA + + EK I    V+DD  +LVG+ S+ D++               
Sbjct: 2   DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIV--------------- 46

Query: 144 FPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPV 203
                       ++    +      V ++MT   + V  +  +++A  L+ E ++R LPV
Sbjct: 47  -----------RKVALRGASALDTPVSEIMTRNVITVTPDDTVDEAMALMTERRFRHLPV 95

Query: 204 VDGYGKLVGLITRGNVVRA 222
           VDG GKLVG+++ G+VV+A
Sbjct: 96  VDG-GKLVGIVSIGDVVKA 113

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239986 cd04613, CBS_pair_SpoIVFB_EriC_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 72.6 bits (179), Expect = 1e-16
 Identities = 41/127 (32%), Positives = 63/127 (49%), Gaps = 28/127 (22%)

Query: 91  TTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNST 150
            T ++E L+ +       FPV+DDD +LVG+VS  D+  +         D SL+  V   
Sbjct: 9   DTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREI-------LFDPSLYDLV--- 58

Query: 151 WKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGY-GK 209
                            V  D+MT  P+VV+   +LEDA +   ++ Y +LPVVD   GK
Sbjct: 59  -----------------VASDIMTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGK 101

Query: 210 LVGLITR 216
           L+G+++R
Sbjct: 102 LLGILSR 108

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|225321 COG2524, COG2524, Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

 Score = 75.1 bits (185), Expect = 4e-16
 Identities = 44/149 (29%), Positives = 70/149 (46%), Gaps = 32/149 (21%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSI 133
            V + M+KK  L  V+   T+ EA +   EK I G PV+DDD K+VG+++  D+    +I
Sbjct: 173 KVKNLMSKK--LITVRPDDTLREAAKLFYEKGIRGAPVVDDD-KIVGIITLSDIA--KAI 227

Query: 134 SGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLL 193
           + GN +                             V D M    + ++E+ ++ DA RL+
Sbjct: 228 ANGNLDAK---------------------------VSDYMRKNVITINEDEDIYDAIRLM 260

Query: 194 LETKYRRLPVVDGYGKLVGLITRGNVVRA 222
            +    RL V D  GK VG+ITR +++  
Sbjct: 261 NKNNVGRLLVTDSNGKPVGIITRTDILTR 289

Length = 294

>gnl|CDD|239994 cd04622, CBS_pair_9, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 70.6 bits (174), Expect = 8e-16
 Identities = 43/135 (31%), Positives = 71/135 (52%), Gaps = 27/135 (20%)

Query: 88  VKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNV 147
           V    T+ EA   + E  +   PV ++D +LVG+V+D D+  + +++ G   DT      
Sbjct: 6   VSPDDTIREAARLMREHDVGALPVCEND-RLVGIVTDRDI-VVRAVAEGRDPDT------ 57

Query: 148 NSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGY 207
                                VGD+MT   + V E+ ++++AARL+ E + RRLPVVD  
Sbjct: 58  -------------------TTVGDVMTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDDD 98

Query: 208 GKLVGLITRGNVVRA 222
           G+LVG+++ G++ RA
Sbjct: 99  GRLVGIVSLGDLARA 113

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|201313 pfam00571, CBS, CBS domain

 Score = 68.3 bits (168), Expect = 1e-15
 Identities = 26/54 (48%), Positives = 37/54 (68%)

Query: 169 VGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRA 222
           V D+MTP  + V  +T+LE+A  L+ E    RLPVVD  GKLVG++T  +++RA
Sbjct: 1   VKDIMTPDVVTVPPDTSLEEALELMRENGISRLPVVDEDGKLVGIVTLRDLLRA 54

CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP. Length = 57

>gnl|CDD|240002 cd04631, CBS_pair_18, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 68.1 bits (167), Expect = 9e-15
 Identities = 38/141 (26%), Positives = 67/141 (47%), Gaps = 17/141 (12%)

Query: 83  EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDW-KLVGVVSDYDLLALDSISGGNQNDT 141
           +D+  V  TT + EA + +V       PV+D+   KLVG+++  D+L             
Sbjct: 1   KDVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKY----------- 49

Query: 142 SLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRL 201
                +    K          +   + V  +MT   + +  + +++DAA L+LE +   L
Sbjct: 50  -----LGGGEKFNKIKTGNGLEAINEPVRSIMTRNVITITPDDSIKDAAELMLEKRVGGL 104

Query: 202 PVVDGYGKLVGLITRGNVVRA 222
           PVVD  GKLVG++T  ++++A
Sbjct: 105 PVVDDDGKLVGIVTERDLLKA 125

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 125

>gnl|CDD|225979 COG3448, COG3448, CBS-domain-containing membrane protein [Signal transduction mechanisms]

 Score = 70.6 bits (173), Expect = 3e-14
 Identities = 46/159 (28%), Positives = 71/159 (44%), Gaps = 24/159 (15%)

Query: 69  RNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
           R G  T  D M++  D+  V T T++D A + L E RI   PV+D+  +LVG+V+  DLL
Sbjct: 241 RMGELTCADIMSR--DVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLL 298

Query: 129 ALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLED 188
                S                       QRL       V G +MT   + V  +T   +
Sbjct: 299 KHARPS---------------------PFQRLRFLRPPTVKG-IMTTPVVTVRPDTPAVE 336

Query: 189 AARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIK 227
               L +     LPV+D  GKLVG++++ +++ A  +  
Sbjct: 337 LVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAALYRNW 375

Length = 382

>gnl|CDD|239983 cd04610, CBS_pair_ParBc_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

 Score = 65.9 bits (161), Expect = 4e-14
 Identities = 39/139 (28%), Positives = 62/139 (44%), Gaps = 34/139 (24%)

Query: 84  DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSL 143
           D+  V    TV + ++ + E    GFPV+D+  K+VG+VS  DLL  D            
Sbjct: 3   DVITVSPDNTVKDVIKLIKETGHDGFPVVDNG-KVVGIVSARDLLGKDPD---------- 51

Query: 144 FPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPV 203
                                  + V ++M+   +V     ++ DAAR++  T   +LPV
Sbjct: 52  -----------------------ETVEEIMSKDLVVAVPEMDIMDAARVMFRTGISKLPV 88

Query: 204 VDGYGKLVGLITRGNVVRA 222
           VD    LVG+IT  +V+R+
Sbjct: 89  VDENNNLVGIITNTDVIRS 107

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 107

>gnl|CDD|239979 cd04606, CBS_pair_Mg_transporter, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

 Score = 65.2 bits (160), Expect = 7e-14
 Identities = 40/139 (28%), Positives = 58/139 (41%), Gaps = 38/139 (27%)

Query: 87  AVKTTTTVDEALERL-----VEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDT 141
           AV+   TV EALE L       + I    V+D++ +L+GVVS                  
Sbjct: 1   AVREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVS------------------ 42

Query: 142 SLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRL 201
                          L+ LL       V D+M    + V  + + E+ ARL  +     L
Sbjct: 43  ---------------LRDLLLADPDTPVSDIMDTDVISVSADDDQEEVARLFEKYDLLAL 87

Query: 202 PVVDGYGKLVGLITRGNVV 220
           PVVD  G+LVG+IT  +V+
Sbjct: 88  PVVDEEGRLVGIITVDDVI 106

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 109

>gnl|CDD|240008 cd04637, CBS_pair_24, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 63.9 bits (156), Expect = 3e-13
 Identities = 38/135 (28%), Positives = 68/135 (50%), Gaps = 18/135 (13%)

Query: 88  VKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNV 147
           V+    ++E  E   + +     V++D+ +LVGV+SD D L   S            P +
Sbjct: 6   VEMDDRLEEVREIFEKHKFHHLLVVEDN-ELVGVISDRDYLKAIS------------PFL 52

Query: 148 NSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGY 207
            +  +T  +L  L      +    +MT  P+ V  +T +++A++LLLE     LPVVD  
Sbjct: 53  GTAGETEKDLATLN-----RRAHQIMTRDPITVSPDTPVDEASKLLLENSISCLPVVDEN 107

Query: 208 GKLVGLITRGNVVRA 222
           G+L+G+IT  ++++ 
Sbjct: 108 GQLIGIITWKDLLKY 122

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|233350 TIGR01302, IMP_dehydrog, inosine-5'-monophosphate dehydrogenase

 Score = 66.6 bits (163), Expect = 7e-13
 Identities = 42/136 (30%), Positives = 66/136 (48%), Gaps = 36/136 (26%)

Query: 91  TTTVDEALERLVEKRITGFPVIDDD---WKLVGVVSDYDLLALDSISGGNQNDTSLFPNV 147
            TTV + LE +  K I+G PV++D     KLVG+++  D+  +                 
Sbjct: 96  ETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFV----------------- 138

Query: 148 NSTWKTFNELQRLLSKTNGKVVGDLMTPAPLV-VHENTNLEDAARLLLETKYRRLPVVDG 206
                          K  GK V ++MT   ++ V E  +LE+A ++L E +  +LPVVD 
Sbjct: 139 ---------------KDKGKPVSEVMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDK 183

Query: 207 YGKLVGLITRGNVVRA 222
            G+LVGLIT  ++V+ 
Sbjct: 184 NGELVGLITMKDIVKR 199

This model describes IMP dehydrogenase, an enzyme of GMP biosynthesis. This form contains two CBS domains. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 450

>gnl|CDD|239969 cd04596, CBS_pair_DRTGG_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

 Score = 61.5 bits (150), Expect = 2e-12
 Identities = 37/140 (26%), Positives = 64/140 (45%), Gaps = 33/140 (23%)

Query: 83  EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTS 142
           ED   + TT TV +  E   E   + FPV+D+  K+VG+V+  D      ++G + + T 
Sbjct: 2   EDTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKD------VAGKDPDTT- 54

Query: 143 LFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLP 202
                                     +  +MT  P+ V+  T++   A +++      LP
Sbjct: 55  --------------------------IEKVMTKNPITVNPKTSVASVAHMMIWEGIEMLP 88

Query: 203 VVDGYGKLVGLITRGNVVRA 222
           VVD   KL+G+I+R +V++A
Sbjct: 89  VVDDNKKLLGIISRQDVLKA 108

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 108

>gnl|CDD|239993 cd04621, CBS_pair_8, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 61.3 bits (149), Expect = 4e-12
 Identities = 37/140 (26%), Positives = 64/140 (45%), Gaps = 5/140 (3%)

Query: 83  EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTS 142
           ED+  V    ++   ++ + +  +    V+DD+ K VGV++  DL           N+  
Sbjct: 1   EDIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFA----EFEDNERG 56

Query: 143 LFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLP 202
           L        +   + +    K    V  D+MT   + V  N ++ DAA+L+LE     LP
Sbjct: 57  LPKKSIKMKRKAGQKRYRYVKEVPLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLP 116

Query: 203 VVDGYGKLVGLITRGNVVRA 222
           VVD    +VG+IT+ ++ R 
Sbjct: 117 VVDN-DNIVGVITKTDICRE 135

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 135

>gnl|CDD|226594 COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription]

 Score = 64.3 bits (157), Expect = 5e-12
 Identities = 43/155 (27%), Positives = 73/155 (47%), Gaps = 33/155 (21%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSI 133
           TV D MT  ED   ++ T TV++ L+ + +   + FPV++   K+VGVV+  D+L     
Sbjct: 189 TVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVL----- 243

Query: 134 SGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLL 193
               +  T++                       KV    MT  P+ V   T++   A+++
Sbjct: 244 --DKKPSTTI----------------------EKV----MTKNPITVRAKTSVASVAQMM 275

Query: 194 LETKYRRLPVVDGYGKLVGLITRGNVVRAALQIKR 228
           +      LPVVD    L+G+ITR +V+++   I+R
Sbjct: 276 IWEGIEMLPVVDSNNTLLGIITRQDVLKSLQMIQR 310

Length = 432

>gnl|CDD|240004 cd04633, CBS_pair_20, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 60.4 bits (147), Expect = 5e-12
 Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 21/141 (14%)

Query: 83  EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL-ALDSISGGNQNDT 141
           + +  V     V  A   +++  I+  PVI+   KLVG+V++ D+  AL S         
Sbjct: 1   KPVITVSPDDRVSHARRLMLDHDISRLPVIEGG-KLVGIVTEKDIADALRS--------- 50

Query: 142 SLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRL 201
                    ++     +    +     V D+MT   + +  +T++ D A L+LE     L
Sbjct: 51  ---------FRPLVRDRHQERRIRNLPVSDIMTRPVITIEPDTSVSDVASLMLENNIGGL 101

Query: 202 PVVDGYGKLVGLITRGNVVRA 222
           PVVD  GKLVG++TR +++R 
Sbjct: 102 PVVDD-GKLVGIVTRTDILRY 121

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 121

>gnl|CDD|201313 pfam00571, CBS, CBS domain

 Score = 58.7 bits (143), Expect = 6e-12
 Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 2/54 (3%)

Query: 75  VGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
           V D MT   D+  V   T+++EALE + E  I+  PV+D+D KLVG+V+  DLL
Sbjct: 1   VKDIMTP--DVVTVPPDTSLEEALELMRENGISRLPVVDEDGKLVGIVTLRDLL 52

CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP. Length = 57

>gnl|CDD|239960 cd04587, CBS_pair_CAP-ED_DUF294_PBI_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

 Score = 59.6 bits (145), Expect = 1e-11
 Identities = 38/128 (29%), Positives = 60/128 (46%), Gaps = 27/128 (21%)

Query: 88  VKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNV 147
           V  TTTV EA + + EKR++   V+D + KLVG+ +  D+       G +   T      
Sbjct: 6   VSPTTTVQEAAKLMREKRVSCVLVMDGN-KLVGIFTSKDIALRVVAQGLDPESTL----- 59

Query: 148 NSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGY 207
                                V  +MTP P+    +T + +A  L+++ K+R LPVVD  
Sbjct: 60  ---------------------VERVMTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDKS 98

Query: 208 GKLVGLIT 215
           G++VGL+ 
Sbjct: 99  GQVVGLLD 106

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 113

>gnl|CDD|240014 cd04643, CBS_pair_30, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 58.7 bits (143), Expect = 2e-11
 Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 24/129 (18%)

Query: 88  VKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNV 147
           V+ T T+  AL  L +   +  PV+D + K VG +S  D+L                   
Sbjct: 6   VQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDIL------------------- 46

Query: 148 NSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGY 207
              WK        L +     V D+M     V+ ++ ++E+   LL++  +  LPVVD  
Sbjct: 47  ---WKLKGLENLDLERLVDLKVIDVMNTDVPVIIDDADIEEILHLLIDQPF--LPVVDDD 101

Query: 208 GKLVGLITR 216
           G  +G+ITR
Sbjct: 102 GIFIGIITR 110

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 116

>gnl|CDD|239984 cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

 Score = 57.6 bits (140), Expect = 6e-11
 Identities = 37/131 (28%), Positives = 66/131 (50%), Gaps = 29/131 (22%)

Query: 92  TTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTW 151
           T++ EA  R+ E+RI+   V+DD  + +G+V++ D+L L   SG +              
Sbjct: 10  TSLAEAASRMRERRISSIVVVDDG-RPLGIVTERDILRLL-ASGPDLQTP---------- 57

Query: 152 KTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLV 211
                            VG++M+   L V  +T+L DA +L+ E   R L VVD  G+L+
Sbjct: 58  -----------------VGEVMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELL 100

Query: 212 GLITRGNVVRA 222
           GL+++ ++++ 
Sbjct: 101 GLLSQTDLLQN 111

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239961 cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

 Score = 57.3 bits (139), Expect = 6e-11
 Identities = 39/140 (27%), Positives = 61/140 (43%), Gaps = 30/140 (21%)

Query: 83  EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTS 142
           + L  +    T+ EA        I G PV+DD  KLVG+V+  D+    +I+ G +    
Sbjct: 1   KPLITLNPNATLREAARLFNTHHIHGAPVVDDG-KLVGIVTLSDI--AHAIARGLELAK- 56

Query: 143 LFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLP 202
                                     V D+MT   + + E+  L DA RL+ +    RL 
Sbjct: 57  --------------------------VKDVMTKDVITIDEDEQLYDAIRLMNKHNVGRLI 90

Query: 203 VVDGYGKLVGLITRGNVVRA 222
           V D  G+ VG+ITR +++R+
Sbjct: 91  VTDDEGRPVGIITRTDILRS 110

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|215936 pfam00478, IMPDH, IMP dehydrogenase / GMP reductase domain

 Score = 60.7 bits (148), Expect = 7e-11
 Identities = 41/140 (29%), Positives = 55/140 (39%), Gaps = 31/140 (22%)

Query: 83  EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTS 142
            D   V   TTV EALE      I+G PV +D   L G+V                    
Sbjct: 90  TDPVTVSPDTTVAEALELKERYGISGVPVTEDGKLLGGLVG------------------- 130

Query: 143 LFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLP 202
                           R +   +   V   MT   +   E   LE+A  +L E K  +LP
Sbjct: 131 ------------IRTSRDIDFLSKVSVVMTMTEDLVTAPEGITLEEANEILHEHKIEKLP 178

Query: 203 VVDGYGKLVGLITRGNVVRA 222
           +VD  G+LVGLITR ++ +A
Sbjct: 179 IVDDDGELVGLITRKDIEKA 198

This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family. Length = 467

>gnl|CDD|239956 cd04583, CBS_pair_ABC_OpuCA_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

 Score = 57.2 bits (139), Expect = 7e-11
 Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 34/139 (24%)

Query: 86  HAVKTTT--TVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSL 143
           + V  T   T+ EA++ + +K++    V+D D KL+G+VS      L+S+    +   S 
Sbjct: 3   NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVS------LESLEQAYKEAKS- 55

Query: 144 FPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPV 203
                                    + D+M      V  + +L D   L+L+   + +PV
Sbjct: 56  -------------------------LEDIMLEDVFTVQPDASLRDVLGLVLKRGPKYVPV 90

Query: 204 VDGYGKLVGLITRGNVVRA 222
           VD  GKLVGLITR ++V  
Sbjct: 91  VDEDGKLVGLITRSSLVDT 109

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 109

>gnl|CDD|239977 cd04604, CBS_pair_KpsF_GutQ_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

 Score = 57.1 bits (139), Expect = 9e-11
 Identities = 36/137 (26%), Positives = 57/137 (41%), Gaps = 37/137 (27%)

Query: 83  EDLHAVKTTTTVDEALERLVEKR--ITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQND 140
           + L  V   T++ +AL  +  K   +T   V+D+D +LVG+ +D DL             
Sbjct: 2   DALPLVSPDTSLKDALLEMSRKGLGMTA--VVDEDGRLVGIFTDGDL------------- 46

Query: 141 TSLFPNVNSTWKTFNELQRLLSKTNGKV---VGDLMTPAPLVVHENTNLEDAARLLLETK 197
                            +R L K    +   V D+MT  P  +  +    +A  L+ E K
Sbjct: 47  -----------------RRALEKGLDILTLPVADVMTRNPKTIDPDALAAEALELMEENK 89

Query: 198 YRRLPVVDGYGKLVGLI 214
              LPVVD  G+ VG++
Sbjct: 90  ITALPVVDDNGRPVGVL 106

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|240115 cd04802, CBS_pair_3, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 56.6 bits (137), Expect = 1e-10
 Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 28/131 (21%)

Query: 92  TTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTW 151
           TTV EA   + E  I G  ++ D+ K VG++++ DL+                       
Sbjct: 10  TTVYEAANIMTENNI-GRLIVVDNEKPVGIITERDLVKK--------------------- 47

Query: 152 KTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLV 211
                +     K     VG++M+   + +  N +L +AA+L+ +   +RLPVVD   +LV
Sbjct: 48  -----VVSRNLKPREVPVGEVMSTPLITIDPNASLNEAAKLMAKHGIKRLPVVDD-DELV 101

Query: 212 GLITRGNVVRA 222
           G++T  ++V  
Sbjct: 102 GIVTTTDIVMG 112

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|240013 cd04642, CBS_pair_29, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 55.4 bits (134), Expect = 4e-10
 Identities = 34/132 (25%), Positives = 60/132 (45%), Gaps = 14/132 (10%)

Query: 84  DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSL 143
            + ++ +   V +A + + +  I+G PV+D+  KL+G +S  DL  L           S 
Sbjct: 2   KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGL---------LLSP 52

Query: 144 FPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPV 203
              +     TF EL    + ++G     L+T        ++ L++    L+  K  R+ V
Sbjct: 53  DDLLLYRTITFKELSEKFTDSDGVKSRPLIT-----CTPSSTLKEVITKLVANKVHRVWV 107

Query: 204 VDGYGKLVGLIT 215
           VD  GK +G+IT
Sbjct: 108 VDEEGKPIGVIT 119

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 126

>gnl|CDD|223591 COG0517, COG0517, FOG: CBS domain [General function prediction only]

 Score = 55.2 bits (133), Expect = 5e-10
 Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 1/54 (1%)

Query: 169 VGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRA 222
           V D+MT   + V  +T++ DA  L+ E     +PVVD  GKLVG+IT  +++RA
Sbjct: 1   VKDIMTKDVITVKPDTSVRDALLLMSENGVSAVPVVDD-GKLVGIITERDILRA 53

Length = 117

>gnl|CDD|240355 PTZ00314, PTZ00314, inosine-5'-monophosphate dehydrogenase; Provisional

 Score = 58.4 bits (142), Expect = 5e-10
 Identities = 32/140 (22%), Positives = 59/140 (42%), Gaps = 37/140 (26%)

Query: 88  VKTTTTVDEALERLVEKRITGFPVIDDDW---KLVGVVSDYDLLALDSISGGNQNDTSLF 144
           +    TV + LE   +K  +   +  D     KL+G+V+  D+  +   S          
Sbjct: 109 LSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVKDKS---------- 158

Query: 145 PNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENT--NLEDAARLLLETKYRRLP 202
                                   V ++MTP   +V  NT  +LE+A  +L E++  +LP
Sbjct: 159 ----------------------TPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLP 196

Query: 203 VVDGYGKLVGLITRGNVVRA 222
           +V+  G+LV L++R ++ + 
Sbjct: 197 IVNDNGELVALVSRSDLKKN 216

Length = 495

>gnl|CDD|239978 cd04605, CBS_pair_MET2_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

 Score = 54.6 bits (132), Expect = 6e-10
 Identities = 31/137 (22%), Positives = 59/137 (43%), Gaps = 37/137 (27%)

Query: 88  VKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNV 147
           +    ++ EA + ++E+ I   PV+D+D +LVG+V+ +D                     
Sbjct: 7   ISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWD--------------------- 45

Query: 148 NSTWKTFNELQRLLSK---TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVV 204
                        +SK    + K V D+MT   +    +  ++ AAR +       LPVV
Sbjct: 46  -------------ISKAVARDKKSVEDIMTRNVITATPDEPIDVAARKMERHNISALPVV 92

Query: 205 DGYGKLVGLITRGNVVR 221
           D   +++G+IT  ++ +
Sbjct: 93  DAENRVIGIITSEDISK 109

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|240010 cd04639, CBS_pair_26, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 54.2 bits (131), Expect = 9e-10
 Identities = 37/128 (28%), Positives = 54/128 (42%), Gaps = 31/128 (24%)

Query: 93  TVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL-ALDSISGGNQNDTSLFPNVNSTW 151
           T+D+A + L+      FPV+D D  LVG+++  DL+ AL         D           
Sbjct: 11  TLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRALAE----GGPDAP--------- 57

Query: 152 KTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLV 211
                           V G +    P  V  +  L+   RL+ +     +PVVDG G+LV
Sbjct: 58  ----------------VRGVMRRDFP-TVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLV 100

Query: 212 GLITRGNV 219
           GL+T  NV
Sbjct: 101 GLVTLENV 108

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 111

>gnl|CDD|214522 smart00116, CBS, Domain in cystathionine beta-synthase and other proteins

 Score = 52.5 bits (127), Expect = 9e-10
 Identities = 22/48 (45%), Positives = 32/48 (66%)

Query: 177 PLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAAL 224
            + V  +T LE+A  LL E   RRLPVVD  G+LVG++TR ++++A  
Sbjct: 2   VVTVSPDTTLEEALELLRENGIRRLPVVDEEGRLVGIVTRRDIIKALA 49

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease. Length = 49

>gnl|CDD|239963 cd04590, CBS_pair_CorC_HlyC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

 Score = 54.0 bits (131), Expect = 1e-09
 Identities = 37/133 (27%), Positives = 53/133 (39%), Gaps = 31/133 (23%)

Query: 84  DLHAVKTTTTVDEALERLVEKRITGFPVIDDDW-KLVGVVSDYDLLALDSISGGNQNDTS 142
           D+ A+    T++E LE + E   + FPV D D   ++GVV   DLL              
Sbjct: 2   DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRA------------ 49

Query: 143 LFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLP 202
                            L        + DL+ P PL V E+T L+D    + + +     
Sbjct: 50  -----------------LAEGEEDLDLRDLLRP-PLFVPESTPLDDLLEEMRKERSHMAI 91

Query: 203 VVDGYGKLVGLIT 215
           VVD YG   GL+T
Sbjct: 92  VVDEYGGTAGLVT 104

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. The second CBS domain in this CD is degenerate. Length = 111

>gnl|CDD|239975 cd04602, CBS_pair_IMPDH_2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

 Score = 53.4 bits (129), Expect = 2e-09
 Identities = 35/139 (25%), Positives = 58/139 (41%), Gaps = 41/139 (29%)

Query: 91  TTTVDEALERLVEKRITGFPVIDD---DWKLVGVVS--DYDLLALDSISGGNQNDTSLFP 145
             TV + LE   +K  +G PV +D     KL+G+V+  D D L                 
Sbjct: 10  DHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFL----------------- 52

Query: 146 NVNSTWKTFNELQRLLSKTNGKVVGDLMTP--APLVVHENTNLEDAARLLLETKYRRLPV 203
                              +   + ++MTP    +V      LE+A  +L E+K  +LP+
Sbjct: 53  -----------------TDSETPLSEVMTPREVLVVAPTGITLEEANEILRESKKGKLPI 95

Query: 204 VDGYGKLVGLITRGNVVRA 222
           V+  G+LV L+TR ++ + 
Sbjct: 96  VNDDGELVALVTRSDLKKN 114

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. Length = 114

>gnl|CDD|239966 cd04593, CBS_pair_EriC_assoc_bac_arch, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

 Score = 53.5 bits (129), Expect = 2e-09
 Identities = 37/140 (26%), Positives = 58/140 (41%), Gaps = 35/140 (25%)

Query: 88  VKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNV 147
           +  TT + EA E+L+E +     V+D D  +VG++                         
Sbjct: 6   LSATTPLREAAEQLIESKHGSALVVDRDGGVVGII------------------------- 40

Query: 148 NSTWKTFNELQRLLS--KTNGKVVGDLMTPAPLV-VHENTNLEDAARLLLETKYRRLPVV 204
                T  +L R L   +       D +   PL+ VH +  L  A   +     R+LPVV
Sbjct: 41  -----TLPDLLRALEADEAGEPSAVDEVATPPLLTVHPDEPLAHALDRMASRGLRQLPVV 95

Query: 205 D--GYGKLVGLITRGNVVRA 222
           D    G+++GL+TR NV+ A
Sbjct: 96  DRGNPGQVLGLLTRENVLLA 115

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in CLC chloride channel family members have been associated with classic Bartter syndrome, Osteopetrosis, Dent's disease, idiopathic generalized epilepsy, and myotonia. Length = 115

>gnl|CDD|240006 cd04635, CBS_pair_22, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 53.3 bits (128), Expect = 2e-09
 Identities = 28/123 (22%), Positives = 55/123 (44%), Gaps = 18/123 (14%)

Query: 100 RLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQR 159
            ++E   TG PV+    +L+G+++  D++   S+    ++        + T         
Sbjct: 18  LMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPT--------- 68

Query: 160 LLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNV 219
                    V  +M+     V  + ++  A  L+LE    RLPVV+   +LVG++ R +V
Sbjct: 69  ---------VEKIMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDV 119

Query: 220 VRA 222
           ++A
Sbjct: 120 LKA 122

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 52.8 bits (127), Expect = 3e-09
 Identities = 19/53 (35%), Positives = 31/53 (58%)

Query: 177 PLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIKRD 229
            + V  +  + +A RL+LE     LPVVD  G+LVG++T  +++RA  +   D
Sbjct: 3   VVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGGLD 55

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|225148 COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

 Score = 55.4 bits (134), Expect = 5e-09
 Identities = 42/152 (27%), Positives = 64/152 (42%), Gaps = 40/152 (26%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEK-----RITGFPVIDDDWKLVGVVSDYDLL 128
           T G  MT  E +  +    TVDEAL+R+ E+      I    V+D+  KL+GVVS  DLL
Sbjct: 133 TAGRIMTT-EFV-TLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLL 190

Query: 129 ALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLED 188
                    + D                            + DLM    + V  + + E+
Sbjct: 191 T-------AEPDEL--------------------------LKDLMEDDVVSVLADDDQEE 217

Query: 189 AARLLLETKYRRLPVVDGYGKLVGLITRGNVV 220
            ARL  +     +PVVD   +L+G+IT  +++
Sbjct: 218 VARLFEKYDLLAVPVVDEDNRLIGIITIDDII 249

Length = 451

>gnl|CDD|239972 cd04599, CBS_pair_GGDEF_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

 Score = 52.0 bits (125), Expect = 5e-09
 Identities = 37/140 (26%), Positives = 58/140 (41%), Gaps = 35/140 (25%)

Query: 83  EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTS 142
            D   +    +V  A   + + RI G PV++D  KLVG+++  D+               
Sbjct: 1   RDPITIDPLDSVGRAARLMEKHRIGGLPVVEDG-KLVGIITSRDVRRAH----------- 48

Query: 143 LFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLP 202
             PN                    ++V D MT   + +    +L +A RL+ E K  RLP
Sbjct: 49  --PN--------------------RLVADAMTREVVTISPEASLLEAKRLMEEKKIERLP 86

Query: 203 VVDGYGKLVGLITRGNVVRA 222
           V+    KLVG+IT+G +   
Sbjct: 87  VLRE-RKLVGIITKGTIALE 105

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 105

>gnl|CDD|239996 cd04624, CBS_pair_11, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 51.1 bits (123), Expect = 1e-08
 Identities = 32/135 (23%), Positives = 63/135 (46%), Gaps = 28/135 (20%)

Query: 88  VKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNV 147
           V   T++ EA + + E+ +    V+D D + +G+V++ D++   +++ G   DT      
Sbjct: 6   VDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVR--AVAAGIDLDT------ 57

Query: 148 NSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGY 207
                                V ++MT   + V  +  + +AA+L+ +   R   VVD  
Sbjct: 58  --------------------PVSEIMTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKG 97

Query: 208 GKLVGLITRGNVVRA 222
           G+LVG+I+  ++VR 
Sbjct: 98  GELVGVISIRDLVRE 112

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|239988 cd04615, CBS_pair_2, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 51.0 bits (122), Expect = 1e-08
 Identities = 29/136 (21%), Positives = 54/136 (39%), Gaps = 27/136 (19%)

Query: 86  HAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFP 145
             V   T +  A+  +        PV+DD  +LVG+++ YD+L+    S           
Sbjct: 4   SCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALESE-------ELK 56

Query: 146 NVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVD 205
           +                      V ++M    + +  N ++  A  L+      RLPV+D
Sbjct: 57  DAK--------------------VREVMNSPVITIDANDSIAKARWLMSNNNISRLPVLD 96

Query: 206 GYGKLVGLITRGNVVR 221
             GK+ G++T  +++R
Sbjct: 97  DKGKVGGIVTEDDILR 112

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|224173 COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 43/146 (29%), Positives = 63/146 (43%), Gaps = 37/146 (25%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDD-WKLVGVVSDYDLLALDS 132
           TV + MT + D+ A+  T TV+E +E ++E   +  PV D D   ++G+V   DLL    
Sbjct: 207 TVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLL---- 262

Query: 133 ISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARL 192
                                    + LL   +   +  L+ P PL V E  +L D   L
Sbjct: 263 -------------------------RALLDGQSDLDLRVLVRP-PLFVPETLSLSD---L 293

Query: 193 LLETKYRRLP---VVDGYGKLVGLIT 215
           L E +  R     VVD YG + GL+T
Sbjct: 294 LEEFREERTHMAIVVDEYGGVEGLVT 319

Length = 429

>gnl|CDD|239966 cd04593, CBS_pair_EriC_assoc_bac_arch, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

 Score = 50.1 bits (120), Expect = 3e-08
 Identities = 20/48 (41%), Positives = 30/48 (62%)

Query: 175 PAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRA 222
           P P V+   T L +AA  L+E+K+    VVD  G +VG+IT  +++RA
Sbjct: 1   PPPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRA 48

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in CLC chloride channel family members have been associated with classic Bartter syndrome, Osteopetrosis, Dent's disease, idiopathic generalized epilepsy, and myotonia. Length = 115

>gnl|CDD|239997 cd04625, CBS_pair_12, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 50.1 bits (120), Expect = 3e-08
 Identities = 24/74 (32%), Positives = 44/74 (59%), Gaps = 5/74 (6%)

Query: 153 TFNELQRLLSKTNGKV----VGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYG 208
           TF E+ + +++    V    V  +M P P+V   + ++++  RL++E   R LPV+DG G
Sbjct: 40  TFREVLQAMAQHGAGVLDTTVRAIMNPEPIVASPDDSIDEVRRLMVERHLRYLPVLDG-G 98

Query: 209 KLVGLITRGNVVRA 222
            L+G+I+  +V +A
Sbjct: 99  TLLGVISFHDVAKA 112

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|240113 cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

 Score = 49.4 bits (119), Expect = 5e-08
 Identities = 36/132 (27%), Positives = 60/132 (45%), Gaps = 29/132 (21%)

Query: 91  TTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNST 150
            TT+ EA   + E R++   V+DD  +LVG+V+D DL       G + +           
Sbjct: 9   DTTIREAARLMTEHRVSSLLVVDDG-RLVGIVTDRDLRNRVVAEGLDPDTP--------- 58

Query: 151 WKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKL 210
                             V ++MT  P+ +  +  + +A  L+LE     LPVVD  G+L
Sbjct: 59  ------------------VSEVMTAPPITIPPDATVFEALLLMLERGIHHLPVVDD-GRL 99

Query: 211 VGLITRGNVVRA 222
           VG+I+  +++R 
Sbjct: 100 VGVISATDLLRL 111

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239958 cd04585, CBS_pair_ACT_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 49.6 bits (119), Expect = 6e-08
 Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
            V D MT+  D   V    +V+EA E ++E++I+G PV+DD  +LVG++++ DL 
Sbjct: 68  KVSDIMTR--DPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLF 120

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 122

>gnl|CDD|239959 cd04586, CBS_pair_BON_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

 Score = 49.5 bits (119), Expect = 7e-08
 Identities = 20/50 (40%), Positives = 33/50 (66%)

Query: 174 TPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAA 223
           T   + V   T++ +AARL+L+     LPVVD  G+LVG+++ G+++R A
Sbjct: 1   TTDVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRA 50

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 135

>gnl|CDD|239958 cd04585, CBS_pair_ACT_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 49.2 bits (118), Expect = 9e-08
 Identities = 21/47 (44%), Positives = 32/47 (68%), Gaps = 1/47 (2%)

Query: 177 PLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAA 223
           P+ V  +T+L +A +L+ E   RRLPVVD  GKLVG++T  ++  A+
Sbjct: 3   PITVTPDTSLMEALKLMKENSIRRLPVVDR-GKLVGIVTDRDLKLAS 48

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 122

>gnl|CDD|240114 cd04801, CBS_pair_M50_like, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

 Score = 48.8 bits (117), Expect = 9e-08
 Identities = 32/137 (23%), Positives = 56/137 (40%), Gaps = 32/137 (23%)

Query: 88  VKTTTTVDEALER-LVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPN 146
           V    T+ E +   ++      F V+D++ + VG++S  DL A+                
Sbjct: 6   VPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAI---------------- 49

Query: 147 VNSTWKTFNELQRLLSKTNGKVVGDLMTPAP--LVVHENTNLEDAARLLLETKYRRLPVV 204
                          S+     V  +MTPA   + V    +L +  +LL E     L VV
Sbjct: 50  -------------PTSQWAQTTVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVV 96

Query: 205 DGYGKLVGLITRGNVVR 221
           +  G+++GLIT  +++R
Sbjct: 97  EDSGQVIGLITEADLLR 113

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|240002 cd04631, CBS_pair_18, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 48.4 bits (116), Expect = 1e-07
 Identities = 22/54 (40%), Positives = 36/54 (66%), Gaps = 2/54 (3%)

Query: 75  VGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
           V   MT+  ++  +    ++ +A E ++EKR+ G PV+DDD KLVG+V++ DLL
Sbjct: 72  VRSIMTR--NVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLL 123

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 125

>gnl|CDD|237843 PRK14869, PRK14869, putative manganese-dependent inorganic pyrophosphatase; Provisional

 Score = 51.0 bits (123), Expect = 1e-07
 Identities = 23/58 (39%), Positives = 36/58 (62%)

Query: 169 VGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQI 226
           V DL    P+ V  +T+L++A  L+ E   + LPVVD  GKL+GL++  ++ RA + I
Sbjct: 70  VRDLEIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDLARAYMDI 127

Length = 546

>gnl|CDD|239982 cd04609, CBS_pair_PALP_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

 Score = 48.0 bits (115), Expect = 1e-07
 Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 30/134 (22%)

Query: 83  EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTS 142
            D+ +V    TV +A+ER+ E  ++  PV+DD  ++VG + + DLL              
Sbjct: 1   GDVVSVAPDDTVSQAIERMREYGVSQLPVVDDG-RVVGSIDESDLL-------------- 45

Query: 143 LFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLP 202
                       + L    +K +  V   +  P P V   +  +E+ + LL   +     
Sbjct: 46  ------------DALIEGKAKFSLPVREVMGEPLPTVD-PDAPIEELSELL--DRGNVAV 90

Query: 203 VVDGYGKLVGLITR 216
           VVD  GK VG+ITR
Sbjct: 91  VVDEGGKFVGIITR 104

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|239968 cd04595, CBS_pair_DHH_polyA_Pol_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

 Score = 47.6 bits (114), Expect = 2e-07
 Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 36/139 (25%)

Query: 88  VKT---TTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLF 144
           VKT     T++EA E L+    T  PV++   ++VG++S  D+                 
Sbjct: 4   VKTVRPEATIEEARELLLRYGHTALPVVEGG-RVVGIISRRDV----------------- 45

Query: 145 PNVNSTWKTFNELQRLLSKTNGKV-VGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPV 203
                        ++ L    G   V D M+   + V  +T L +   L++E    R+PV
Sbjct: 46  -------------EKALRHGLGHAPVKDYMSTDVVTVPPDTPLSEVQELMVEHDIGRVPV 92

Query: 204 VDGYGKLVGLITRGNVVRA 222
           V+  G+LVG++TR +++R 
Sbjct: 93  VED-GRLVGIVTRTDLLRT 110

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|240007 cd04636, CBS_pair_23, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 47.7 bits (114), Expect = 3e-07
 Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 3/80 (3%)

Query: 49  SREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITG 108
                   ++ + +  S   +     V + MTKK  +  V   TT+++    + +K I  
Sbjct: 54  GLFYVTLLYSVIFLDESKIKKLLGKKVEEIMTKK--VITVDEDTTIEDVARIMSKKNIKR 111

Query: 109 FPVIDDDWKLVGVVSDYDLL 128
            PV+DD  KLVG++S  D++
Sbjct: 112 LPVVDDG-KLVGIISRGDII 130

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 132

>gnl|CDD|215936 pfam00478, IMPDH, IMP dehydrogenase / GMP reductase domain

 Score = 50.3 bits (121), Expect = 3e-07
 Identities = 30/111 (27%), Positives = 46/111 (41%)

Query: 18  NGVINSVPHLQLPITVATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGD 77
           +G I     +    TVA    L +R     V          G+    +    +    V  
Sbjct: 86  SGFITDPVTVSPDTTVAEALELKERYGISGVPVTEDGKLLGGLVGIRTSRDIDFLSKVSV 145

Query: 78  FMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
            MT  EDL       T++EA E L E +I   P++DDD +LVG+++  D+ 
Sbjct: 146 VMTMTEDLVTAPEGITLEEANEILHEHKIEKLPIVDDDGELVGLITRKDIE 196

This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family. Length = 467

>gnl|CDD|181127 PRK07807, PRK07807, inosine 5-monophosphate dehydrogenase; Validated

 Score = 50.3 bits (121), Expect = 3e-07
 Identities = 35/138 (25%), Positives = 59/138 (42%), Gaps = 35/138 (25%)

Query: 88  VKTTTTVDEALERLVEKRITGFP-VIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPN 146
           +    TV +AL  L+ KR  G   V+D++ + VGVV++ D   +D  +            
Sbjct: 102 LSPDDTVGDAL-ALLPKRAHGAVVVVDEEGRPVGVVTEADCAGVDRFTQ----------- 149

Query: 147 VNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDG 206
                                 V D+M+   + +   T+  +A  LL   + +  PVVD 
Sbjct: 150 ----------------------VRDVMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVDA 187

Query: 207 YGKLVGLITRGNVVRAAL 224
            G+LVG++TR   +RA +
Sbjct: 188 DGRLVGVLTRTGALRATI 205

Length = 479

>gnl|CDD|239980 cd04607, CBS_pair_NTP_transferase_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

 Score = 47.5 bits (114), Expect = 3e-07
 Identities = 29/133 (21%), Positives = 55/133 (41%), Gaps = 32/133 (24%)

Query: 86  HAVKTTTTVDEALERL-VEKRITGFPVIDDDWKLVGVVSDYDLL-ALDSISGGNQNDTSL 143
             V    ++ +AL ++          V+D++ +L+G V+D D+  AL  + G + +D   
Sbjct: 5   LLVSPDASILDALRKIDKNALRIVL-VVDENGRLLGTVTDGDIRRAL--LKGLSLDDP-- 59

Query: 144 FPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPV 203
                                    V ++M   P+     ++ E+   L+ E   R LP+
Sbjct: 60  -------------------------VSEVMNRNPITAKVGSSREEILALMRERSIRHLPI 94

Query: 204 VDGYGKLVGLITR 216
           +D  G++VGL T 
Sbjct: 95  LDEEGRVVGLATL 107

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 113

>gnl|CDD|239957 cd04584, CBS_pair_ACT_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 47.2 bits (113), Expect = 4e-07
 Identities = 16/39 (41%), Positives = 24/39 (61%)

Query: 177 PLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLIT 215
            + +   T + +A  L+ E K R LPVVD  G+LVG++T
Sbjct: 3   VVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVT 41

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 121

>gnl|CDD|237843 PRK14869, PRK14869, putative manganese-dependent inorganic pyrophosphatase; Provisional

 Score = 49.8 bits (120), Expect = 4e-07
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 75  VGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129
           V   MT  EDL        +++  E +++ R   +PV+D+D K+VGV+S Y LL+
Sbjct: 248 VSYIMTT-EDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLS 301

Length = 546

>gnl|CDD|214522 smart00116, CBS, Domain in cystathionine beta-synthase and other proteins

 Score = 45.2 bits (108), Expect = 5e-07
 Identities = 18/41 (43%), Positives = 28/41 (68%)

Query: 88  VKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
           V   TT++EALE L E  I   PV+D++ +LVG+V+  D++
Sbjct: 5   VSPDTTLEEALELLRENGIRRLPVVDEEGRLVGIVTRRDII 45

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease. Length = 49

>gnl|CDD|239971 cd04598, CBS_pair_GGDEF_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

 Score = 46.4 bits (111), Expect = 7e-07
 Identities = 34/137 (24%), Positives = 56/137 (40%), Gaps = 29/137 (21%)

Query: 83  EDLHAVKTTTTVDEALERLVE-KRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDT 141
                V   TTV++ LER      ++   V+DD  + VG++    L+ L S   G     
Sbjct: 1   RPAPTVSPDTTVNDVLERFERDPDLSALAVVDDG-RPVGLIMREALMELLSTPYG----R 55

Query: 142 SLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRL 201
           +L+                      K V ++M P PL+V  +T LE+ +RL      + L
Sbjct: 56  ALYGK--------------------KPVSEVMDPDPLIVEADTPLEEVSRLATGRDSQNL 95

Query: 202 P---VVDGYGKLVGLIT 215
               +V   G+ +G+ T
Sbjct: 96  YDGFIVTEEGRYLGIGT 112

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 119

>gnl|CDD|240007 cd04636, CBS_pair_23, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 45.8 bits (109), Expect = 1e-06
 Identities = 16/51 (31%), Positives = 30/51 (58%)

Query: 177 PLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIK 227
            + V ++  L D   +LL  K   +PVVD  G++VG+++ G+++R   + K
Sbjct: 3   VITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYKGK 53

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 132

>gnl|CDD|235507 PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed

 Score = 47.9 bits (115), Expect = 1e-06
 Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVV 122
            V + MTK E L  V   TT++EALE L E RI   PV+DD+ +L G++
Sbjct: 148 PVSEVMTK-ERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLI 195

Length = 486

>gnl|CDD|239978 cd04605, CBS_pair_MET2_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

 Score = 45.3 bits (108), Expect = 1e-06
 Identities = 17/53 (32%), Positives = 35/53 (66%)

Query: 177 PLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIKRD 229
            + + E+ ++++AA+L++E     LPVVD  G+LVG++T  ++ +A  + K+ 
Sbjct: 4   VVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVARDKKS 56

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|129488 TIGR00393, kpsF, KpsF/GutQ family protein

 Score = 47.9 bits (114), Expect = 1e-06
 Identities = 38/140 (27%), Positives = 57/140 (40%), Gaps = 29/140 (20%)

Query: 75  VGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSIS 134
           V D M +  DL  +  TT+  +AL  + EKR+    V D++ +LVGV +D DL     + 
Sbjct: 157 VKDLM-QTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRAL-LG 214

Query: 135 GGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLL 194
           GG+                               V D MT  P     +  L +A   L 
Sbjct: 215 GGSLKSE---------------------------VRDFMTLGPKTFKLDALLLEALEFLE 247

Query: 195 ETKYRRLPVVDGYGKLVGLI 214
             K   L VVD + K++G++
Sbjct: 248 RRKITSLVVVDDHNKVLGVL 267

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli [Energy metabolism, Sugars]. Length = 268

>gnl|CDD|226147 COG3620, COG3620, Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

 Score = 45.9 bits (109), Expect = 3e-06
 Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 3/85 (3%)

Query: 147 VNSTWKTFNELQRLLSKTNGKVV--GDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVV 204
           V+    T   +   L +     +    +M    + V  + ++ D   L+ +    +LPV+
Sbjct: 43  VDPRLSTVKRILEALEEAEKTRITAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVI 102

Query: 205 DGYGKLVGLITRGNVVRAALQIKRD 229
           +   K+VG IT  ++VRA L+    
Sbjct: 103 EE-DKVVGSITENDIVRALLEGMES 126

Length = 187

>gnl|CDD|233350 TIGR01302, IMP_dehydrog, inosine-5'-monophosphate dehydrogenase

 Score = 46.6 bits (111), Expect = 4e-06
 Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 75  VGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129
           V + MT+ E++  V     ++EAL+ L E RI   PV+D + +LVG+++  D++ 
Sbjct: 145 VSEVMTR-EEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVK 198

This model describes IMP dehydrogenase, an enzyme of GMP biosynthesis. This form contains two CBS domains. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 450

>gnl|CDD|240001 cd04630, CBS_pair_17, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 44.2 bits (105), Expect = 4e-06
 Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 169 VGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRA 222
           V ++MT   + V  + +++  ARL+  T  RR PVV+   +L+G+I+  ++  A
Sbjct: 62  VYEIMTKPLISVSPDMDIKYCARLMERTNIRRAPVVEN-NELIGIISLTDIFLA 114

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 114

>gnl|CDD|223591 COG0517, COG0517, FOG: CBS domain [General function prediction only]

 Score = 44.0 bits (104), Expect = 5e-06
 Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 4/66 (6%)

Query: 65  SVPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVE-KRITGFPVIDDD-WKLVGVV 122
                     V + MTK   +  V   T ++EALE +VE  +I   PV+DDD  KLVG++
Sbjct: 54  LAAGGKRLLPVKEVMTK--PVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGII 111

Query: 123 SDYDLL 128
           +  D+L
Sbjct: 112 TLSDIL 117

Length = 117

>gnl|CDD|237843 PRK14869, PRK14869, putative manganese-dependent inorganic pyrophosphatase; Provisional

 Score = 46.4 bits (111), Expect = 5e-06
 Identities = 21/54 (38%), Positives = 35/54 (64%), Gaps = 1/54 (1%)

Query: 169 VGDLMTPAPLV-VHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR 221
           V  +MT   LV   ++  LED   ++L+++YR  PVVD  GK+VG+I+R +++ 
Sbjct: 248 VSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLS 301

Length = 546

>gnl|CDD|239977 cd04604, CBS_pair_KpsF_GutQ_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

 Score = 43.6 bits (104), Expect = 6e-06
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 2/56 (3%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129
            V D MT+  +   +       EALE + E +IT  PV+DD+ + VGV+  +DLL 
Sbjct: 60  PVADVMTR--NPKTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLLR 113

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|239974 cd04601, CBS_pair_IMPDH, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

 Score = 43.2 bits (103), Expect = 7e-06
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 69  RNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVV 122
            +    V + MT + +L      T+++EALE L E +I   PV+DD+ KL G++
Sbjct: 50  TDLDKPVSEVMTPE-NLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLI 102

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. Length = 110

>gnl|CDD|239994 cd04622, CBS_pair_9, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 43.6 bits (104), Expect = 7e-06
 Identities = 24/55 (43%), Positives = 31/55 (56%), Gaps = 2/55 (3%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
           TVGD MT    +  V     VDEA   + E ++   PV+DDD +LVG+VS  DL 
Sbjct: 59  TVGDVMT--RGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLA 111

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239968 cd04595, CBS_pair_DHH_polyA_Pol_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

 Score = 43.4 bits (103), Expect = 7e-06
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 3/54 (5%)

Query: 75  VGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
           V D+M+   D+  V   T + E  E +VE  I G   + +D +LVG+V+  DLL
Sbjct: 58  VKDYMST--DVVTVPPDTPLSEVQELMVEHDI-GRVPVVEDGRLVGIVTRTDLL 108

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|240012 cd04641, CBS_pair_28, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 43.8 bits (104), Expect = 7e-06
 Identities = 30/139 (21%), Positives = 62/139 (44%), Gaps = 20/139 (14%)

Query: 84  DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSL 143
           ++   +  T + + L+ LVE+R++  P++D++ K+V V S +D++ L     G  N+  L
Sbjct: 2   NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINL--AKEGAYNNLDL 59

Query: 144 FPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPV 203
                    T  E     S+    V              +  L     L+++ +  RL V
Sbjct: 60  ---------TVGEALERRSQDFEGVRT---------CSPDDCLRTIFDLIVKARVHRLVV 101

Query: 204 VDGYGKLVGLITRGNVVRA 222
           VD   ++ G+I+  ++++ 
Sbjct: 102 VDENKRVEGIISLSDILQF 120

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 120

>gnl|CDD|239995 cd04623, CBS_pair_10, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 43.3 bits (103), Expect = 8e-06
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 3/50 (6%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVS 123
            V + MT   ++  V    TVDEA+  + E+R    PV+D   KLVG+VS
Sbjct: 60  PVSEIMT--RNVITVTPDDTVDEAMALMTERRFRHLPVVDGG-KLVGIVS 106

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|215154 PLN02274, PLN02274, inosine-5'-monophosphate dehydrogenase

 Score = 45.8 bits (109), Expect = 8e-06
 Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 2/56 (3%)

Query: 169 VGDLMTPAP--LVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRA 222
           + ++MT     +      +LE+A  +L ++K  +LP+V+  G+LV L+TR +V R 
Sbjct: 165 LSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRV 220

Length = 505

>gnl|CDD|239973 cd04600, CBS_pair_HPP_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

 Score = 43.0 bits (102), Expect = 1e-05
 Identities = 19/50 (38%), Positives = 33/50 (66%)

Query: 174 TPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAA 223
           +   + V  +T+LE+A  LL   + + LPVVDG  +LVG++T+ +++R A
Sbjct: 1   SRDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHA 50

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 124

>gnl|CDD|240008 cd04637, CBS_pair_24, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 2/54 (3%)

Query: 75  VGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
               MT+  D   V   T VDEA + L+E  I+  PV+D++ +L+G+++  DLL
Sbjct: 69  AHQIMTR--DPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLL 120

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|239985 cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 42.2 bits (100), Expect = 2e-05
 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 175 PAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRA 222
           P  + V  +  +++   L+   ++R  PVVD  G+LVG++T  ++ R 
Sbjct: 1   PDVVTVPVDLTVDEVLALMFGERHRGYPVVDD-GRLVGIVTLADIRRV 47

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|240355 PTZ00314, PTZ00314, inosine-5'-monophosphate dehydrogenase; Provisional

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 20/60 (33%), Positives = 32/60 (53%)

Query: 72  TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD 131
           +  V + MT +E L    T  +++EA E L E R    P+++D+ +LV +VS  DL    
Sbjct: 158 STPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNR 217

Length = 495

>gnl|CDD|240004 cd04633, CBS_pair_20, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 41.5 bits (98), Expect = 4e-05
 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 3/54 (5%)

Query: 75  VGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
           V D MT    +  ++  T+V +    ++E  I G PV+DD  KLVG+V+  D+L
Sbjct: 69  VSDIMT--RPVITIEPDTSVSDVASLMLENNIGGLPVVDDG-KLVGIVTRTDIL 119

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 121

>gnl|CDD|240116 cd04803, CBS_pair_15, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 41.5 bits (98), Expect = 5e-05
 Identities = 22/44 (50%), Positives = 32/44 (72%)

Query: 182 ENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQ 225
           E+ +L DA  L+ E + R LPVV+  GKLVGL+T+ +++RAAL 
Sbjct: 8   EDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALS 51

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|239978 cd04605, CBS_pair_MET2_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

 Score = 41.1 bits (97), Expect = 5e-05
 Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 8/64 (12%)

Query: 70  NGTYTVGDFMTKKEDLHAVKTTT---TVDEALERLVEKRITGFPVIDDDWKLVGVVSDYD 126
               +V D MT+      V T T    +D A  ++    I+  PV+D + +++G+++  D
Sbjct: 52  RDKKSVEDIMTRN-----VITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSED 106

Query: 127 LLAL 130
           +  L
Sbjct: 107 ISKL 110

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|225457 COG2905, COG2905, Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

 Score = 43.1 bits (102), Expect = 6e-05
 Identities = 28/148 (18%), Positives = 62/148 (41%), Gaps = 30/148 (20%)

Query: 75  VGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSIS 134
           VG+  T       V    ++ +A  ++ ++ ++   V+DD   L+G+V+  DL +     
Sbjct: 151 VGEVKTLP--AVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRS----- 203

Query: 135 GGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLL 194
                            +   + +    K     V ++MT   + V     L +A  ++L
Sbjct: 204 -----------------RVIADGRSKTQK-----VSEVMTSPVISVDRGDFLFEAMLMML 241

Query: 195 ETKYRRLPVVDGYGKLVGLITRGNVVRA 222
             + + LPV +  G+ +G++T  +++R 
Sbjct: 242 RNRIKHLPVTED-GQPLGILTLTDILRL 268

Length = 610

>gnl|CDD|240005 cd04634, CBS_pair_21, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 41.2 bits (97), Expect = 7e-05
 Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 175 PAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRA 222
             P+  + +  + DAARLL E K    PV+DG GKLVG+++  ++++ 
Sbjct: 1   KNPITCNADDTISDAARLLRENKISGAPVLDG-GKLVGIVSESDILKL 47

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 143

>gnl|CDD|239956 cd04583, CBS_pair_ABC_OpuCA_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

 Score = 40.6 bits (96), Expect = 7e-05
 Identities = 14/55 (25%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 69  RNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVS 123
                ++ D M   ED+  V+   ++ + L  ++++     PV+D+D KLVG+++
Sbjct: 50  YKEAKSLEDIM--LEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLIT 102

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 109

>gnl|CDD|239988 cd04615, CBS_pair_2, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 40.6 bits (95), Expect = 8e-05
 Identities = 20/49 (40%), Positives = 29/49 (59%)

Query: 177 PLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQ 225
           P  V  NT++  A   +  +  R LPVVD   +LVG+ITR +V+  AL+
Sbjct: 3   PSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALE 51

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|240010 cd04639, CBS_pair_26, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 40.4 bits (95), Expect = 9e-05
 Identities = 21/38 (55%), Positives = 26/38 (68%)

Query: 186 LEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAA 223
           L+DAA  LL T     PVVDG G LVGL+TR +++RA 
Sbjct: 12  LDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRAL 49

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 111

>gnl|CDD|239973 cd04600, CBS_pair_HPP_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 2/56 (3%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129
           TVGD M+    +  V+  T + E +  L +      PV+D+D +LVG+V+  DL+A
Sbjct: 70  TVGDIMSP--PVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA 123

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 124

>gnl|CDD|239975 cd04602, CBS_pair_IMPDH_2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

 Score = 39.9 bits (94), Expect = 1e-04
 Identities = 19/60 (31%), Positives = 32/60 (53%)

Query: 69  RNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
            +    + + MT +E L    T  T++EA E L E +    P+++DD +LV +V+  DL 
Sbjct: 53  TDSETPLSEVMTPREVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLK 112

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. Length = 114

>gnl|CDD|233287 TIGR01137, cysta_beta, cystathionine beta-synthase

 Score = 42.1 bits (99), Expect = 1e-04
 Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 5/81 (6%)

Query: 147 VNSTWKTFNELQRLLSKTNGKV-----VGDLMTPAPLVVHENTNLEDAARLLLETKYRRL 201
           +N  W   N        T   V     V DL  PAP+ VH    + DA  +L E  + +L
Sbjct: 310 LNDEWMKDNGFLDDEVLTVFDVLKNATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQL 369

Query: 202 PVVDGYGKLVGLITRGNVVRA 222
           PVV   GK++G +T   ++ A
Sbjct: 370 PVVTEAGKVLGSVTLRELLSA 390

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven [Amino acid biosynthesis, Serine family]. Length = 454

>gnl|CDD|240005 cd04634, CBS_pair_21, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 75  VGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
           V D MTKK  +  +    ++++A E +V  +I   PV++D  +LVG+V+  D++
Sbjct: 91  VRDIMTKK--VITISPDASIEDAAELMVRHKIKRLPVVEDG-RLVGIVTRGDII 141

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 143

>gnl|CDD|239995 cd04623, CBS_pair_10, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 39.0 bits (92), Expect = 2e-04
 Identities = 14/48 (29%), Positives = 26/48 (54%)

Query: 175 PAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRA 222
              + V  +  + +AA+L+ E     + VVD  G+LVG+ +  ++VR 
Sbjct: 1   RDVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRK 48

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239984 cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

 Score = 39.5 bits (93), Expect = 2e-04
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 2/56 (3%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129
            VG+ M+    L  V   T++ +A + + E  I    V+DDD +L+G++S  DLL 
Sbjct: 57  PVGEVMSSP--LLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ 110

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|180842 PRK07107, PRK07107, inosine 5-monophosphate dehydrogenase; Validated

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 75  VGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVV--SDYD 126
           V DFMT  E L      TT+ EA + + + ++   P++D +  LV +V   DYD
Sbjct: 163 VKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYD 216

Length = 502

>gnl|CDD|234987 PRK01862, PRK01862, putative voltage-gated ClC-type chloride channel ClcB; Provisional

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 171 DLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIKRDG 230
           +L+ PA  VV    ++ D  R+ LE   + L VVD  G+  G +   ++    L  KRD 
Sbjct: 451 ELIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLD-KRDT 509

Length = 574

>gnl|CDD|239959 cd04586, CBS_pair_BON_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

 Score = 39.1 bits (92), Expect = 3e-04
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129
            V D MT+   +  V   T + E  E + E RI   PV+    +LVG+VS  DLL 
Sbjct: 82  KVADVMTR--PVVTVGEDTPLAEVAELMEEHRIKRVPVVRGG-RLVGIVSRADLLR 134

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 135

>gnl|CDD|225979 COG3448, COG3448, CBS-domain-containing membrane protein [Signal transduction mechanisms]

 Score = 41.0 bits (96), Expect = 3e-04
 Identities = 23/88 (26%), Positives = 49/88 (55%), Gaps = 9/88 (10%)

Query: 155 NELQRLLSKTNGKVV---------GDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVD 205
           ++L+RLL +T  + +          D+M+   + V  +T+++ A +LL E + + LPV+D
Sbjct: 224 DDLERLLRETELQALRRRMGELTCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLD 283

Query: 206 GYGKLVGLITRGNVVRAALQIKRDGERS 233
            + +LVG++T+ ++++ A        R 
Sbjct: 284 EHRRLVGIVTQRDLLKHARPSPFQRLRF 311

Length = 382

>gnl|CDD|130370 TIGR01303, IMP_DH_rel_1, IMP dehydrogenase family protein

 Score = 41.0 bits (96), Expect = 3e-04
 Identities = 33/137 (24%), Positives = 53/137 (38%), Gaps = 34/137 (24%)

Query: 88  VKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNV 147
           +    TV +A+  L+ KR  G  V+  + + VG+V+D DLL +D  +             
Sbjct: 101 LAPHDTVSDAMA-LIHKRAHGAAVVILEDRPVGLVTDSDLLGVDRFTQ------------ 147

Query: 148 NSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGY 207
                                V D+M+   +    +T    A  LL        P+VD  
Sbjct: 148 ---------------------VRDIMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDAD 186

Query: 208 GKLVGLITRGNVVRAAL 224
           G L G++TR   +RA +
Sbjct: 187 GTLAGILTRTGALRATI 203

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302 [Unknown function, General]. Length = 475

>gnl|CDD|239970 cd04597, CBS_pair_DRTGG_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 18/47 (38%), Positives = 24/47 (51%)

Query: 169 VGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLIT 215
           V D++   P+    N  L +A  L+ E   R LPVVD  G   G+IT
Sbjct: 60  VRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIIT 106

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 113

>gnl|CDD|239974 cd04601, CBS_pair_IMPDH, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

 Score = 38.6 bits (91), Expect = 4e-04
 Identities = 16/40 (40%), Positives = 23/40 (57%)

Query: 177 PLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITR 216
           P+ V  +  + +A  L+ E     LPVVD  GKLVG++T 
Sbjct: 4   PITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTN 43

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. Length = 110

>gnl|CDD|239967 cd04594, CBS_pair_EriC_assoc_archaea, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

 Score = 38.5 bits (90), Expect = 4e-04
 Identities = 32/135 (23%), Positives = 52/135 (38%), Gaps = 36/135 (26%)

Query: 88  VKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNV 147
           VK    V EA   ++E  +   PV+D + K +G V   D+                    
Sbjct: 6   VKDYDKVYEAKRIMIENDLLSLPVVDYN-KFLGAVYLKDIE------------------- 45

Query: 148 NSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGY 207
                         + T G VV D +      V   +  E+A  ++++ K R  PVVD  
Sbjct: 46  --------------NATYGDVV-DYIVRGIPYVRLTSTAEEAWEVMMKNKTRWCPVVD-D 89

Query: 208 GKLVGLITRGNVVRA 222
           GK  G++T  +++ A
Sbjct: 90  GKFKGIVTLDSILDA 104

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in CLC chloride channel family members have been associated with classic Bartter syndrome, Osteopetrosis, Dent's disease, idiopathic generalized epilepsy, and myotonia. Length = 104

>gnl|CDD|240000 cd04629, CBS_pair_16, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.3 bits (90), Expect = 5e-04
 Identities = 14/49 (28%), Positives = 27/49 (55%)

Query: 177 PLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQ 225
           P+    + ++ +A   LL++K    PVVD  G LVG ++  + ++  L+
Sbjct: 3   PVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLE 51

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 114

>gnl|CDD|240114 cd04801, CBS_pair_M50_like, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

 Score = 38.0 bits (89), Expect = 5e-04
 Identities = 16/57 (28%), Positives = 31/57 (54%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLAL 130
           TV   MT    L  V +  ++ E L+ L E+ +    V++D  +++G++++ DLL  
Sbjct: 58  TVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLRR 114

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|239964 cd04591, CBS_pair_EriC_assoc_euk_bac, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

 Score = 38.0 bits (89), Expect = 6e-04
 Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%)

Query: 173 MTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRA 222
           + P+P  V   T+LE   +L  +   R L VVD  G+LVG+ITR ++++A
Sbjct: 57  IDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLKA 105

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in CLC chloride channel family members have been associated with classic Bartter syndrome, Osteopetrosis, Dent's disease, idiopathic generalized epilepsy, and myotonia. Length = 105

>gnl|CDD|240116 cd04803, CBS_pair_15, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.0 bits (89), Expect = 7e-04
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
            V + M    D+  V   T + EA E +VE +I   PV+DD   LVG+++  D L
Sbjct: 68  PVAEVMKT--DVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFL 120

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|239960 cd04587, CBS_pair_CAP-ED_DUF294_PBI_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

 Score = 37.2 bits (87), Expect = 0.001
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVS 123
            V   MT         + T V EAL  +V+ +    PV+D   ++VG++ 
Sbjct: 59  LVERVMTPNPVC--ATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLD 106

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 113

>gnl|CDD|240014 cd04643, CBS_pair_30, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 37.2 bits (87), Expect = 0.001
 Identities = 13/51 (25%), Positives = 24/51 (47%)

Query: 179 VVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIKRD 229
            V +   L  A  +L +  Y  +PV+D  GK VG I+  +++     ++  
Sbjct: 5   YVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKGLENL 55

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 116

>gnl|CDD|239989 cd04617, CBS_pair_4, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 37.6 bits (88), Expect = 0.001
 Identities = 38/139 (27%), Positives = 61/139 (43%), Gaps = 32/139 (23%)

Query: 88  VKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNV 147
           V+  T+V +A+  L  + +    V+D+D  LVGVVS  DLL     S G  +   + P  
Sbjct: 6   VRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLL---KASIGGADLQKV-P-- 59

Query: 148 NSTWKTFNELQRLLSKTNGKVVGDLMTPAP--LVVHENTNLEDAARLLLETKYRRLPVV- 204
                                VG +MT  P         ++ +AA+ L+E +   LPVV 
Sbjct: 60  ---------------------VGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVE 98

Query: 205 --DGYGKLVGLITRGNVVR 221
             D   +++G IT+ N+ +
Sbjct: 99  KVDEGLEVIGRITKTNITK 117

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 118

>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit

 Score = 39.1 bits (91), Expect = 0.001
 Identities = 34/152 (22%), Positives = 57/152 (37%), Gaps = 34/152 (22%)

Query: 72  TYTVGDFMTKKEDLHAVKTT-TTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLAL 130
            +       +       KT       AL+ + ++R+    V+D   KLVGVV       +
Sbjct: 238 VFDAERIAQRMNTGPITKTADKGPRSALQLMRDERVDSLYVVDRQNKLVGVVD------V 291

Query: 131 DSISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAA 190
           +SI    +    L                           D++      V   T L +  
Sbjct: 292 ESIKQARKKAQGL--------------------------QDVLIDDIYTVDAGTLLRETV 325

Query: 191 RLLLETKYRRLPVVDGYGKLVGLITRGNVVRA 222
           R +L+   + +PVVD   +LVG++TRG++V A
Sbjct: 326 RKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDA 356

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363

>gnl|CDD|129495 TIGR00400, mgtE, Mg2+ transporter (mgtE)

 Score = 38.7 bits (90), Expect = 0.001
 Identities = 14/52 (26%), Positives = 30/52 (57%)

Query: 169 VGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVV 220
           +  +M  +   +    + E+ ARL+ +  +  +PVVD  G+LVG++T  +++
Sbjct: 197 LSSIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDII 248

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer [Transport and binding proteins, Cations and iron carrying compounds]. Length = 449

>gnl|CDD|240006 cd04635, CBS_pair_22, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 37.1 bits (86), Expect = 0.002
 Identities = 13/44 (29%), Positives = 28/44 (63%)

Query: 85  LHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
           +++V    ++  A+E ++E  I   PV+++  +LVG+V  +D+L
Sbjct: 77  VYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVL 120

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|240113 cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

 Score = 36.7 bits (86), Expect = 0.002
 Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 3/57 (5%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLAL 130
            V + MT       +    TV EAL  ++E+ I   PV+DD  +LVGV+S  DLL L
Sbjct: 58  PVSEVMTA--PPITIPPDATVFEALLLMLERGIHHLPVVDDG-RLVGVISATDLLRL 111

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|237843 PRK14869, PRK14869, putative manganese-dependent inorganic pyrophosphatase; Provisional

 Score = 38.7 bits (91), Expect = 0.002
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDL 127
            V D    K     V   T++ EA   + E  +   PV+D++ KL+G+VS  DL
Sbjct: 69  QVRDLEIDK--PVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDL 120

Length = 546

>gnl|CDD|239955 cd04582, CBS_pair_ABC_OpuCA_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

 Score = 36.6 bits (85), Expect = 0.002
 Identities = 23/135 (17%), Positives = 46/135 (34%), Gaps = 34/135 (25%)

Query: 88  VKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNV 147
           V+    + +AL  + +  +    V+D D + +G V+                        
Sbjct: 6   VRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVT------------------------ 41

Query: 148 NSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGY 207
                     +R  ++ +G   GD   P  + V  + +L      +       LP VD  
Sbjct: 42  ----------RREAARASGGCCGDHAEPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDED 91

Query: 208 GKLVGLITRGNVVRA 222
           G+ VG +T+ ++   
Sbjct: 92  GRYVGEVTQRSIADY 106

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 106

>gnl|CDD|183186 PRK11543, gutQ, D-arabinose 5-phosphate isomerase; Provisional

 Score = 37.8 bits (88), Expect = 0.003
 Identities = 12/34 (35%), Positives = 22/34 (64%)

Query: 94  VDEALERLVEKRITGFPVIDDDWKLVGVVSDYDL 127
             +A E L++++IT  PV+D++ KL G ++  D 
Sbjct: 282 AIDAKEILMKRKITAAPVVDENGKLTGAINLQDF 315

Length = 321

>gnl|CDD|183186 PRK11543, gutQ, D-arabinose 5-phosphate isomerase; Provisional

 Score = 37.4 bits (87), Expect = 0.004
 Identities = 32/142 (22%), Positives = 49/142 (34%), Gaps = 32/142 (22%)

Query: 75  VGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSIS 134
           V   M + + +  V  T +V +A+  L    +    V D   ++ GV +D DL       
Sbjct: 199 VHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDL------- 251

Query: 135 GGNQNDTSLFPNVNSTWKTFNELQRLLSKTNG--KVVGDLMTPAPLVVHENTNLEDAARL 192
                                  +R L         V + MT     +   +   DA  +
Sbjct: 252 -----------------------RRWLVGGGALTTPVNEAMTRGGTTLQAQSRAIDAKEI 288

Query: 193 LLETKYRRLPVVDGYGKLVGLI 214
           L++ K    PVVD  GKL G I
Sbjct: 289 LMKRKITAAPVVDENGKLTGAI 310

Length = 321

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	234
COG2524	294	Predicted transcriptional regulator, contains C-te	99.83
COG3448	382	CBS-domain-containing membrane protein [Signal tra	99.79
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	99.74
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	99.74
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	99.74
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	99.73
COG3620	187	Predicted transcriptional regulator with C-termina	99.72
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	99.72
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	99.72
COG4109	432	Predicted transcriptional regulator containing CBS	99.72
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	99.71
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	99.71
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	99.71
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	99.69
PRK01862	574	putative voltage-gated ClC-type chloride channel C	99.69
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	99.69
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	99.69
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	99.69
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	99.69
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	99.69
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	99.69
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	99.68
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	99.68
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	99.68
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	99.67
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	99.67
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	99.67
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	99.67
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	99.67
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	99.67
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	99.67
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	99.67
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	99.67
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	99.67
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	99.67
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	99.66
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	99.66
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	99.66
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	99.66
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	99.65
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	99.65
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	99.65
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	99.65
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	99.65
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	99.65
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	99.64
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	99.64
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	99.64
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	99.64
COG2905	610	Predicted signal-transduction protein containing c	99.64
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	99.64
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	99.64
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	99.64
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	99.64
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	99.63
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	99.63
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	99.63
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	99.63
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	99.63
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	99.63
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	99.62
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	99.62
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	99.62
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	99.62
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	99.61
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	99.61
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	99.61
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	99.61
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	99.6
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	99.6
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	99.6
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	99.6
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	99.59
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	99.59
PLN02274	505	inosine-5'-monophosphate dehydrogenase	99.58
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	99.57
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	99.57
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	99.57
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	99.56
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	99.56
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	99.56
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	99.56
PRK11573	413	hypothetical protein; Provisional	99.55
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	99.53
PRK14869	546	putative manganese-dependent inorganic pyrophospha	99.53
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	99.52
COG0517	117	FOG: CBS domain [General function prediction only]	99.51
COG1253	429	TlyC Hemolysins and related proteins containing CB	99.5
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	99.36
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	99.36
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	99.26
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	99.25
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	99.15
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	99.14
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	99.14
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	99.09
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	99.07
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	99.04
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	98.79
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	98.77
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	98.63
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	98.62
PRK14869	546	putative manganese-dependent inorganic pyrophospha	98.61
COG3448	382	CBS-domain-containing membrane protein [Signal tra	98.59
COG2524	294	Predicted transcriptional regulator, contains C-te	98.58
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	98.56
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	98.52
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	98.5
COG3620	187	Predicted transcriptional regulator with C-termina	98.49
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	98.48
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	98.46
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	98.44
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	98.43
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	98.43
PLN02274	505	inosine-5'-monophosphate dehydrogenase	98.39
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	98.39
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	98.36
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	98.36
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	98.35
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	98.35
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	98.33
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	98.32
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	98.31
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	98.31
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	98.3
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	98.3
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	98.3
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	98.29
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	98.29
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	98.28
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	98.28
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	98.28
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	98.28
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	98.28
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	98.26
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	98.26
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	98.26
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	98.26
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	98.25
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	98.25
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	98.25
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	98.25
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	98.24
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	98.23
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	98.23
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	98.23
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	98.22
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	98.22
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	98.22
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	98.2
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	98.19
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	98.19
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	98.19
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	98.19
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	98.19
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	98.18
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	98.17
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	98.17
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	98.16
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	98.15
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	98.14
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	98.13
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	98.13
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	98.13
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	98.12
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	98.12
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	98.11
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	98.11
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	98.11
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	98.1
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	98.1
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	98.09
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	98.07
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	98.05
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	98.05
COG4109	432	Predicted transcriptional regulator containing CBS	98.02
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	98.01
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	98.0
COG0517	117	FOG: CBS domain [General function prediction only]	97.95
COG2905	610	Predicted signal-transduction protein containing c	97.94
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	97.94
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	97.93
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	97.9
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	97.89
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	97.89
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	97.87
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	97.86
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	97.86
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	97.84
PRK01862	574	putative voltage-gated ClC-type chloride channel C	97.82
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	97.82
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	97.79
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	97.77
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	97.6
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	97.26
KOG0476	931	consensus Cl- channel CLC-2 and related proteins (	97.23
PRK11573	413	hypothetical protein; Provisional	97.19
COG1253	429	TlyC Hemolysins and related proteins containing CB	96.97
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	96.87
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	95.87
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	95.26
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	95.13
KOG2118	498	consensus Predicted membrane protein, contains two	94.31
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	94.13
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	92.44
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	92.37
KOG0476	931	consensus Cl- channel CLC-2 and related proteins (	91.52
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	91.32
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	91.23

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=99.83  E-value=5.6e-20  Score=146.41  Aligned_cols=124  Identities=32%  Similarity=0.455  Sum_probs=113.5

Q ss_pred             cCccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccc
Q 026712           70 NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNS  149 (234)
Q Consensus        70 ~~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~  149 (234)
                      .+..+|+++|.+  ++.++.+++|+++|.++|.++++..+||+|++ +++|++|..|+..+++..               
T Consensus       169 iPk~~V~~~~s~--~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~d-k~vGiit~~dI~~aia~g---------------  230 (294)
T COG2524         169 IPKEKVKNLMSK--KLITVRPDDTLREAAKLFYEKGIRGAPVVDDD-KIVGIITLSDIAKAIANG---------------  230 (294)
T ss_pred             cCcchhhhhccC--CceEecCCccHHHHHHHHHHcCccCCceecCC-ceEEEEEHHHHHHHHHcC---------------
Confidence            457789999999  89999999999999999999999999999965 999999999998864321               


Q ss_pred             hhhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHH
Q 026712          150 TWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQ  225 (234)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~  225 (234)
                                    .....|+++|.++++++..|+.+.||++.|..+++.++.|+|.+|+++|+||++|+++.+.-
T Consensus       231 --------------~~~~kV~~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia~  292 (294)
T COG2524         231 --------------NLDAKVSDYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIAG  292 (294)
T ss_pred             --------------CccccHHHHhccCCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHhhc
Confidence                          35678999999999999999999999999999999999999999999999999999998764

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=99.79  E-value=1.4e-18  Score=140.97  Aligned_cols=138  Identities=32%  Similarity=0.473  Sum_probs=120.5

Q ss_pred             CcCccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCcc
Q 026712           69 RNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVN  148 (234)
Q Consensus        69 ~~~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~  148 (234)
                      ...+.+..+||.+  +++++..++++.+|.+.|.++++..+||+|++.+++|+|+++|+.+..                 
T Consensus       241 ~~~~LtcadIMSr--dVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a-----------------  301 (382)
T COG3448         241 RMGELTCADIMSR--DVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHA-----------------  301 (382)
T ss_pred             HhccccHHHhcCc--cceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhcc-----------------
Confidence            3567889999999  999999999999999999999999999999999999999999998742                 


Q ss_pred             chhhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHhhh
Q 026712          149 STWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIKR  228 (234)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~~~  228 (234)
                       .|   ..++.+ .......++.+|+.++.++.++++..+++-.|.+.+.|++||+|++|+++||||+.|++..+.+...
T Consensus       302 -~~---~p~qrl-r~~~~~~vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~lvGIvsQtDliaal~r~~~  376 (382)
T COG3448         302 -RP---SPFQRL-RFLRPPTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAALYRNWS  376 (382)
T ss_pred             -Cc---chHHHh-hccCCCcccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEcCCCcEEEEeeHHHHHHHHHHHHH
Confidence             11   111222 2456678999999999999999999999999999999999999999999999999999999987654


Q ss_pred             hC
Q 026712          229 DG  230 (234)
Q Consensus       229 ~~  230 (234)
                      ..
T Consensus       377 ~~  378 (382)
T COG3448         377 QH  378 (382)
T ss_pred             Hh
Confidence            43

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=99.74  E-value=2.7e-17  Score=140.58  Aligned_cols=121  Identities=26%  Similarity=0.297  Sum_probs=107.4

Q ss_pred             ccccccccccCCC--ceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccc
Q 026712           72 TYTVGDFMTKKED--LHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNS  149 (234)
Q Consensus        72 ~~~v~~im~~~~~--~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~  149 (234)
                      ..+|+++|.+  +  +.++++++++.+|.+.|.+.+...+||+|++|+++|+|+..|+.+.+...               
T Consensus       196 ~~~V~~im~~--~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~~~---------------  258 (321)
T PRK11543        196 LNKVHHLMRR--DDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLVGG---------------  258 (321)
T ss_pred             HhHHHHHhcc--CCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHhCC---------------
Confidence            6789999998  6  99999999999999999888888999999999999999999998643110               


Q ss_pred             hhhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHH
Q 026712          150 TWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRA  222 (234)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~  222 (234)
                                   .....++.++|.+++.++.+++++.+|++.|.+++...+||+|++|+++|+||+.|+++.
T Consensus       259 -------------~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~  318 (321)
T PRK11543        259 -------------GALTTPVNEAMTRGGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA  318 (321)
T ss_pred             -------------CCcCCcHHHhcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence                         023456899999999999999999999999999999999999988899999999999864

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=99.74  E-value=5e-17  Score=117.35  Aligned_cols=109  Identities=26%  Similarity=0.331  Sum_probs=95.3

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK  163 (234)
Q Consensus        84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (234)
                      ++.++++++++.+|.+.|.+.+.+.+||+|++++++|+|+..|+.+...                             ..
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~-----------------------------~~   52 (111)
T cd04603           2 QTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLLEIGP-----------------------------ND   52 (111)
T ss_pred             ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHhhcc-----------------------------cc
Confidence            3578899999999999999888899999998899999999999986310                             00


Q ss_pred             cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712          164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR  221 (234)
Q Consensus       164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~  221 (234)
                      ....++.++|..++.++.+++++.+|++.|.+++.+.+||+|++|+++|+||.+|+++
T Consensus        53 ~~~~~v~~~~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~~  110 (111)
T cd04603          53 YETLKVCEVYIVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTIYERELLR  110 (111)
T ss_pred             ccccChhheeecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence            1235688899888999999999999999999999999999998899999999999986

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.74  E-value=6.5e-17  Score=117.24  Aligned_cols=112  Identities=23%  Similarity=0.319  Sum_probs=97.2

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK  163 (234)
Q Consensus        84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (234)
                      .+.++++++++.+|.+.|.+.+...+||+|++|+++|+++.+|+.+.......                          .
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~~~~~~--------------------------~   55 (114)
T cd04619           2 RLAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQMGRCGG--------------------------P   55 (114)
T ss_pred             ceEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHHHHHhhcCC--------------------------C
Confidence            35788999999999999999999999999999999999999999875321000                          1


Q ss_pred             cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712          164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR  221 (234)
Q Consensus       164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~  221 (234)
                      ....++.++|..+++++.+++++.++++.|.+++.+++||+|++|+++|+|+++|+++
T Consensus        56 ~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~  113 (114)
T cd04619          56 GCTAPVENVMTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDENARPLGVLNARDALK  113 (114)
T ss_pred             cccCCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence            2346788999999999999999999999999999999999998889999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.73  E-value=9.8e-17  Score=117.31  Aligned_cols=119  Identities=21%  Similarity=0.353  Sum_probs=93.6

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK  163 (234)
Q Consensus        84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (234)
                      ++.++++++++.+|.+.|.+++.+.+||+|++|+++|+++.+|+.+............              ++..    
T Consensus         2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~~~~~~~~~~--------------~~~~----   63 (120)
T cd04641           2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKEGAYNNLDL--------------TVGE----   63 (120)
T ss_pred             CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHhcCccccccC--------------CHHH----
Confidence            6789999999999999999999999999998899999999999987531110000000              0000    


Q ss_pred             cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHH
Q 026712          164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRA  222 (234)
Q Consensus       164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~  222 (234)
                        .....+.|..++.++.+++++.++++.|.+++.+.+||+|++|+++|+||+.|++++
T Consensus        64 --~~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~~  120 (120)
T cd04641          64 --ALERRSQDFEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQF  120 (120)
T ss_pred             --HHhhcccCCCCCeEEcCCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhcC
Confidence              001234456678999999999999999999999999999987999999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=99.72  E-value=4e-17  Score=121.21  Aligned_cols=124  Identities=22%  Similarity=0.327  Sum_probs=107.9

Q ss_pred             CccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccch
Q 026712           71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNST  150 (234)
Q Consensus        71 ~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~  150 (234)
                      ...++..+|+.  +++.+.+++++.+++++|.+.+++.+||+++ ++++|-||.+++.+......               
T Consensus        63 ~~ita~~iM~s--pvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-~k~VGsItE~~iv~~~le~~---------------  124 (187)
T COG3620          63 TRITAKTIMHS--PVVSVSPDDSISDVVNLMRDKGISQLPVIEE-DKVVGSITENDIVRALLEGM---------------  124 (187)
T ss_pred             ceEeHhhhccC--CeeEECchhhHHHHHHHHHHcCCccCceeeC-CeeeeeecHHHHHHHHhccc---------------
Confidence            46688999998  9999999999999999999999999999997 89999999999998743221               


Q ss_pred             hhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHh
Q 026712          151 WKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQI  226 (234)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~  226 (234)
                                 ..-....+.++|..++++|++++++..+-+++..++.  +.|++ +|+++||||+.|+++.+.+.
T Consensus       125 -----------e~i~~~~vr~vM~e~fP~Vs~~~~l~vI~~LL~~~~A--VlV~e-~G~~vGIITk~DI~k~~~~~  186 (187)
T COG3620         125 -----------ESIRSLRVREVMGEPFPTVSPDESLNVISQLLEEHPA--VLVVE-NGKVVGIITKADIMKLLAGT  186 (187)
T ss_pred             -----------cchhhhhHHHHhcCCCCcCCCCCCHHHHHHHHhhCCe--EEEEe-CCceEEEEeHHHHHHHHhcc
Confidence                       1134567999999999999999999999999988775  77885 89999999999999988653

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.72  E-value=1.1e-16  Score=113.38  Aligned_cols=94  Identities=31%  Similarity=0.458  Sum_probs=86.0

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCeeEEEcCC-CcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHh
Q 026712           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDD-WKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLS  162 (234)
Q Consensus        84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (234)
                      ++.++++++++.+|.+.|.+.+.+.+||+|++ |+++|++|..|+.+..                               
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~-------------------------------   50 (98)
T cd04618           2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILIL-------------------------------   50 (98)
T ss_pred             eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhe-------------------------------
Confidence            47899999999999999999999999999975 8999999999998641                               


Q ss_pred             hcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEehHHHHH
Q 026712          163 KTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGY-GKLVGLITRGNVVR  221 (234)
Q Consensus       163 ~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~-~~~vGiit~~dll~  221 (234)
                        .           +.++.+++++.+|++.|.+++.+++||++++ |+++|+||.+|+++
T Consensus        51 --~-----------~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~   97 (98)
T cd04618          51 --R-----------LVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK   97 (98)
T ss_pred             --e-----------eEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence              0           7889999999999999999999999999987 89999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=99.72  E-value=1.2e-16  Score=136.95  Aligned_cols=124  Identities=23%  Similarity=0.328  Sum_probs=106.1

Q ss_pred             CccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccch
Q 026712           71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNST  150 (234)
Q Consensus        71 ~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~  150 (234)
                      ...+|+++|.+..++.++++++++.+|++.|.+.+.+.+||+|++|+++|+||.+|+.+..... .              
T Consensus       200 ~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~~~~-~--------------  264 (326)
T PRK10892        200 LLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVFDMG-I--------------  264 (326)
T ss_pred             ccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHHhcC-C--------------
Confidence            5678999998522688999999999999999988888888889899999999999997642110 0              


Q ss_pred             hhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHH
Q 026712          151 WKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRA  222 (234)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~  222 (234)
                                  .....++.++|.++++++.+++++.+|++.|.+++++++||++ +|+++|+||+.|+++.
T Consensus       265 ------------~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lvGiit~~dil~~  323 (326)
T PRK10892        265 ------------DLRQASIADVMTPGGIRVRPGILAVDALNLMQSRHITSVLVAD-GDHLLGVLHMHDLLRA  323 (326)
T ss_pred             ------------CcccCCHHHhcCCCCEEECCCCCHHHHHHHHHHCCCcEEEEee-CCEEEEEEEhHHhHhc
Confidence                        0124679999999999999999999999999999999999998 6899999999999874

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=99.72  E-value=7.3e-17  Score=133.92  Aligned_cols=127  Identities=31%  Similarity=0.489  Sum_probs=118.5

Q ss_pred             CccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccch
Q 026712           71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNST  150 (234)
Q Consensus        71 ~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~  150 (234)
                      .-..|+++|.|..+..++.+++++++..++..+.+.+++||+|+..+++|+|+.+|+...                    
T Consensus       186 dI~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~~~--------------------  245 (432)
T COG4109         186 DIITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLDK--------------------  245 (432)
T ss_pred             heeeHHHhccccccceeccccccHHHHHHHHHHcCCCccceecccceEEEEEEehhhhcC--------------------
Confidence            356899999987789999999999999999999999999999999999999999999864                    


Q ss_pred             hhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHhhhhC
Q 026712          151 WKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIKRDG  230 (234)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~~~~~  230 (234)
                                   .+++++..+|+++|+++.+.+++..+.++|.-.+++.+||++++.+++|+||++|+++.+-..+.+.
T Consensus       246 -------------~~~t~ieKVMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq~~q~qp  312 (432)
T COG4109         246 -------------KPSTTIEKVMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQMIQRQP  312 (432)
T ss_pred             -------------CCCccHHHHhccCCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHHHhccCC
Confidence                         5778999999999999999999999999999999999999999999999999999999998776654

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=99.71  E-value=2.3e-16  Score=113.09  Aligned_cols=105  Identities=31%  Similarity=0.483  Sum_probs=95.5

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK  163 (234)
Q Consensus        84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (234)
                      ++.++.+++++.++.+.|.+.+...+||+|++|+++|+++..++...                                 
T Consensus         3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~---------------------------------   49 (108)
T cd04596           3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAGK---------------------------------   49 (108)
T ss_pred             ccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHhcc---------------------------------
Confidence            67899999999999999998888899999998999999999999753                                 


Q ss_pred             cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712          164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR  221 (234)
Q Consensus       164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~  221 (234)
                      ....++.++|...+.++.+++++.++++.|.+++.+.+||++++|+++|+++..|+++
T Consensus        50 ~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~  107 (108)
T cd04596          50 DPDTTIEKVMTKNPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK  107 (108)
T ss_pred             cccccHHHHhcCCCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence            1235788899888999999999999999999999999999998899999999999975

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.71  E-value=2.6e-16  Score=114.74  Aligned_cols=111  Identities=30%  Similarity=0.375  Sum_probs=94.7

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK  163 (234)
Q Consensus        84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (234)
                      ++.++++++++.+|.+.|.+.+...+||+|++++++|+|+..|+.+......                           .
T Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~~~~---------------------------~   54 (118)
T cd04617           2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASIGGA---------------------------D   54 (118)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHcCC---------------------------C
Confidence            5688999999999999999889899999998899999999999987532110                           0


Q ss_pred             cCCCcccccccC--CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCC---CcEEEEEehHHHHH
Q 026712          164 TNGKVVGDLMTP--APLVVHENTNLEDAARLLLETKYRRLPVVDGY---GKLVGLITRGNVVR  221 (234)
Q Consensus       164 ~~~~~v~~im~~--~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~---~~~vGiit~~dll~  221 (234)
                      ....++.++|..  ++.++.+++++.+++++|.+++.+++||+|++   |+++|+||++|+++
T Consensus        55 ~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~  117 (118)
T cd04617          55 LQKVPVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK  117 (118)
T ss_pred             ccCCCHHHHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence            124567788874  68899999999999999999999999999976   69999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.71  E-value=1.9e-16  Score=140.76  Aligned_cols=122  Identities=26%  Similarity=0.353  Sum_probs=110.1

Q ss_pred             cCccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccc
Q 026712           70 NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNS  149 (234)
Q Consensus        70 ~~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~  149 (234)
                      ....+++++|.+  ++.++++++++.++.++|.+.+++.+||+|++++++|+||.+|+...                   
T Consensus        86 l~~VKv~~iMi~--~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~~-------------------  144 (479)
T PRK07807         86 VAWVKSRDLVFD--TPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAGV-------------------  144 (479)
T ss_pred             Hhhccccccccc--CCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhcC-------------------
Confidence            456778899988  89999999999999999999999999999999999999999999642                   


Q ss_pred             hhhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHh
Q 026712          150 TWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQI  226 (234)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~  226 (234)
                                    ....++.++|+.+++++++++++.+|++.|.+++.+.+||+|++|+++|+||++||++.....
T Consensus       145 --------------~~~~~V~diMt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~~  207 (479)
T PRK07807        145 --------------DRFTQVRDVMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIYT  207 (479)
T ss_pred             --------------ccCCCHHHhccCCceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCC
Confidence                          123569999999999999999999999999999999999999889999999999999976543

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=99.69  E-value=3.1e-16  Score=131.84  Aligned_cols=128  Identities=23%  Similarity=0.396  Sum_probs=109.9

Q ss_pred             cCccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCC-CcEEEEEehHHHhhhhccCCCCCCCCCCCCCcc
Q 026712           70 NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDD-WKLVGVVSDYDLLALDSISGGNQNDTSLFPNVN  148 (234)
Q Consensus        70 ~~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~  148 (234)
                      +...+|+++|++..++.+++.++++.++.+.+.+++++.+||++++ ++++|+|+.+|++.... .              
T Consensus        64 l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~-~--------------  128 (292)
T PRK15094         64 IADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMR-S--------------  128 (292)
T ss_pred             cCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhh-c--------------
Confidence            4577999999986679999999999999999999999999999876 78999999999985421 0              


Q ss_pred             chhhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHhh
Q 026712          149 STWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIK  227 (234)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~~  227 (234)
                                    ......+.++|.+ ++++++++++.++++.|.+++.+.+||+|+.|.++|+||..||++.+....
T Consensus       129 --------------~~~~~~l~~l~r~-~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIle~ivGei  192 (292)
T PRK15094        129 --------------DAEAFSMDKVLRQ-AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVGEI  192 (292)
T ss_pred             --------------cCCcCCHHHHcCC-CcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHHhCCC
Confidence                          0112347788865 568999999999999999999999999998899999999999999998653

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=99.69  E-value=2.3e-16  Score=144.55  Aligned_cols=130  Identities=21%  Similarity=0.247  Sum_probs=112.2

Q ss_pred             CCcCccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCc
Q 026712           68 PRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNV  147 (234)
Q Consensus        68 ~~~~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~  147 (234)
                      .....++++|+|++  +..++++++++.|+.+.|.+++.+.+||+|++++++|+|+.+|+.+......            
T Consensus       442 ~~L~~~~V~dim~~--~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~~~------------  507 (574)
T PRK01862        442 ERLRTTQMRELIQP--AQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLDKR------------  507 (574)
T ss_pred             hHHhhCcHHHHhcC--CCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhccc------------
Confidence            34567899999998  7889999999999999999999999999999999999999999987421110            


Q ss_pred             cchhhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCC--CcEEEEEehHHHHHHHHH
Q 026712          148 NSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGY--GKLVGLITRGNVVRAALQ  225 (234)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~--~~~vGiit~~dll~~l~~  225 (234)
                                     ...+.++.++|++++.++++++++.++++.|.+++.+.+||+|++  ++++|+||++|+++.+.+
T Consensus       508 ---------------~~~~~~v~dim~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~~  572 (574)
T PRK01862        508 ---------------DTTDKTAADYAHTPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYRR  572 (574)
T ss_pred             ---------------ccccchHHHhccCCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHHh
Confidence                           012357889999999999999999999999999999999999876  489999999999999876


Q ss_pred             h
Q 026712          226 I  226 (234)
Q Consensus       226 ~  226 (234)
                      .
T Consensus       573 ~  573 (574)
T PRK01862        573 M  573 (574)
T ss_pred             h
Confidence            4

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=99.69  E-value=5.1e-16  Score=113.82  Aligned_cols=121  Identities=31%  Similarity=0.531  Sum_probs=98.8

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK  163 (234)
Q Consensus        84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (234)
                      ++.++.+++++.++.+.|.+.+++.+||++++|+++|+|+..|+.+........           +.+..+.      ..
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~-----------~~~~~~~------~~   65 (124)
T cd04600           3 DVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHARPDGRR-----------PLRGRLR------GR   65 (124)
T ss_pred             CcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHhhhcccccc-----------hhhhhhh------cc
Confidence            678999999999999999998999999999889999999999998653211100           0000000      11


Q ss_pred             cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712          164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR  221 (234)
Q Consensus       164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~  221 (234)
                      ....++.++|..+++++.+++++.++++.|.+.+.+.+||++++|+++|+|+..|+++
T Consensus        66 ~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~  123 (124)
T cd04600          66 DKPETVGDIMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA  123 (124)
T ss_pred             cccccHHHhccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence            2345788999989999999999999999999999999999998899999999999985

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=99.69  E-value=6.5e-16  Score=111.93  Aligned_cols=111  Identities=32%  Similarity=0.432  Sum_probs=95.8

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK  163 (234)
Q Consensus        84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (234)
                      ++.++.+++++.++.+.|.+.+.+.+||+|++|+++|+++.+|+.+......                           .
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~---------------------------~   54 (115)
T cd04593           2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALEADE---------------------------A   54 (115)
T ss_pred             CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHhccc---------------------------c
Confidence            4678899999999999999999999999999899999999999987532110                           0


Q ss_pred             cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCC--CcEEEEEehHHHHH
Q 026712          164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGY--GKLVGLITRGNVVR  221 (234)
Q Consensus       164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~--~~~vGiit~~dll~  221 (234)
                      ....++.++|..++.++.+++++.++++.|.+++.+.+||+|++  |+++|+||..|+++
T Consensus        55 ~~~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~  114 (115)
T cd04593          55 GEPSAVDEVATPPLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL  114 (115)
T ss_pred             cccccHHHhccCCceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence            12345788888899999999999999999999999999999976  79999999999986

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.69  E-value=9.5e-16  Score=110.28  Aligned_cols=111  Identities=36%  Similarity=0.621  Sum_probs=95.9

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK  163 (234)
Q Consensus        84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (234)
                      ++.++.++.++.++.+.|.+.+++.+||+|++++++|+++.+|+.+.+.....                          .
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~--------------------------~   55 (113)
T cd04623           2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGA--------------------------S   55 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHhhcCC--------------------------C
Confidence            57789999999999999999899999999988999999999999875321110                          0


Q ss_pred             cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712          164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR  221 (234)
Q Consensus       164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~  221 (234)
                      ....++.++|.+++.++.+++++.++++.|.+.+.+.+||+++ |+++|+|+..|+++
T Consensus        56 ~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~  112 (113)
T cd04623          56 ALDTPVSEIMTRNVITVTPDDTVDEAMALMTERRFRHLPVVDG-GKLVGIVSIGDVVK  112 (113)
T ss_pred             ccccCHHHhcCCCcEEECCCCcHHHHHHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence            1235788899888999999999999999999999999999996 99999999999976

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.69  E-value=8.9e-16  Score=111.10  Aligned_cols=111  Identities=25%  Similarity=0.376  Sum_probs=95.6

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCeeEEEcCC-CcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHh
Q 026712           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDD-WKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLS  162 (234)
Q Consensus        84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (234)
                      ++.++.+++++.++++.|.+.+.+.+||+|++ ++++|+++.+|+.+.+.....                          
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~--------------------------   55 (114)
T cd04630           2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGR--------------------------   55 (114)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCC--------------------------
Confidence            57889999999999999998899999999987 899999999999875321100                          


Q ss_pred             hcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712          163 KTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR  221 (234)
Q Consensus       163 ~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~  221 (234)
                      .....++.++|..+++++.+++++.++++.|.+++.+.+||+++ |+++|+|+..|+++
T Consensus        56 ~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~  113 (114)
T cd04630          56 DPDRVNVYEIMTKPLISVSPDMDIKYCARLMERTNIRRAPVVEN-NELIGIISLTDIFL  113 (114)
T ss_pred             CCCccCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence            01235788999888999999999999999999999999999996 99999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=99.69  E-value=9.8e-16  Score=110.63  Aligned_cols=109  Identities=23%  Similarity=0.366  Sum_probs=95.0

Q ss_pred             ceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhhc
Q 026712           85 LHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSKT  164 (234)
Q Consensus        85 ~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (234)
                      ..++++++++.++.+.|.+.+...+||+|++|+++|+++.+|+.+.....                            ..
T Consensus         4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~----------------------------~~   55 (113)
T cd04607           4 QLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALLKG----------------------------LS   55 (113)
T ss_pred             ceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHHhcC----------------------------CC
Confidence            57889999999999999988888999999889999999999997642111                            01


Q ss_pred             CCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712          165 NGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR  221 (234)
Q Consensus       165 ~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~  221 (234)
                      ...++.++|...+.++.+++++.++++.|.+++.+.+||++++|+++|+||.+|++.
T Consensus        56 ~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~  112 (113)
T cd04607          56 LDDPVSEVMNRNPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDDLLS  112 (113)
T ss_pred             cCCCHHHhhcCCCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence            235688999888999999999999999999999999999998899999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.69  E-value=9.8e-16  Score=109.21  Aligned_cols=104  Identities=21%  Similarity=0.357  Sum_probs=92.9

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK  163 (234)
Q Consensus        84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (234)
                      ++.+++++.++.+|.+.|.+.+...+||+|++|+++|+++..|+.+..                                
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~~--------------------------------   49 (106)
T cd04582           2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARAS--------------------------------   49 (106)
T ss_pred             CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHhc--------------------------------
Confidence            467889999999999999888888999999889999999999998631                                


Q ss_pred             cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712          164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR  221 (234)
Q Consensus       164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~  221 (234)
                        ..++.++|.+.+.++.+++++.++++.|.+++...+||++++|+++|+|+..++++
T Consensus        50 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~  105 (106)
T cd04582          50 --GGCCGDHAEPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD  105 (106)
T ss_pred             --ccchhhhcccCCEEECCCCCHHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence              12467888888888999999999999999999999999998889999999999975

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.68  E-value=7.8e-16  Score=110.64  Aligned_cols=109  Identities=30%  Similarity=0.437  Sum_probs=95.7

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK  163 (234)
Q Consensus        84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (234)
                      ++.++.+++++.++.+.|.+.+...+||++++|+++|+++..++.+.+..                             .
T Consensus         2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~-----------------------------~   52 (111)
T cd04639           2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRALAE-----------------------------G   52 (111)
T ss_pred             CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHHHh-----------------------------c
Confidence            56788999999999999988888899999988999999999999865321                             1


Q ss_pred             cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712          164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR  221 (234)
Q Consensus       164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~  221 (234)
                      ....++.++|..++.++.+++++.++++.|.+++...+||++++|+++|++|..|+.+
T Consensus        53 ~~~~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~  110 (111)
T cd04639          53 GPDAPVRGVMRRDFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE  110 (111)
T ss_pred             CCCCcHHHHhcCCCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence            1235788899888999999999999999999999999999997799999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.68  E-value=1.4e-15  Score=108.71  Aligned_cols=106  Identities=33%  Similarity=0.483  Sum_probs=94.9

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK  163 (234)
Q Consensus        84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (234)
                      ++.++.++.++.++.+.|.+.+...+||+|++++++|+++..|+.+..                                
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~--------------------------------   50 (109)
T cd04583           3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQAY--------------------------------   50 (109)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHHh--------------------------------
Confidence            567889999999999999988999999999889999999999997631                                


Q ss_pred             cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712          164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR  221 (234)
Q Consensus       164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~  221 (234)
                      ....++.++|...+.++++++++.++++.|.+.+.+++||++++|+++|+++.+|+++
T Consensus        51 ~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~  108 (109)
T cd04583          51 KEAKSLEDIMLEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD  108 (109)
T ss_pred             hcCCcHhHhhcCCceEECCCCcHHHHHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence            1235688888888999999999999999999999999999998899999999999875

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=99.68  E-value=2e-15  Score=108.30  Aligned_cols=107  Identities=27%  Similarity=0.507  Sum_probs=94.8

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK  163 (234)
Q Consensus        84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (234)
                      ++.++.+++++.++.+.|.+.+.+.+||+|++|+++|+++.+++++...                               
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~-------------------------------   51 (110)
T cd04605           3 PVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVA-------------------------------   51 (110)
T ss_pred             CCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHHh-------------------------------
Confidence            6788999999999999999999999999998899999999999976421                               


Q ss_pred             cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712          164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR  221 (234)
Q Consensus       164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~  221 (234)
                      ....++.++|..++.++.+++++.++++.|.+++.+.+||++++|+++|+|++.|+++
T Consensus        52 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~  109 (110)
T cd04605          52 RDKKSVEDIMTRNVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDISK  109 (110)
T ss_pred             hCccCHHHhcCCCCeEECCCCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence            1113478888888999999999999999999999999999998899999999999965

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.67  E-value=2e-15  Score=108.61  Aligned_cols=110  Identities=26%  Similarity=0.400  Sum_probs=96.0

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK  163 (234)
Q Consensus        84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (234)
                      ++.++.+++++.++.+.|.+.+...+||+|++++++|+++.+|+++.+....                            
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~~~~----------------------------   53 (112)
T cd04624           2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAAGI----------------------------   53 (112)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHhccC----------------------------
Confidence            4678899999999999999888999999998899999999999987532111                            


Q ss_pred             cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712          164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR  221 (234)
Q Consensus       164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~  221 (234)
                      ....++.++|..+++++.+++++.++++.|.+++...+||++++|+++|++++.|+++
T Consensus        54 ~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~  111 (112)
T cd04624          54 DLDTPVSEIMTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVR  111 (112)
T ss_pred             CCccCHHHhccCCCEEECCCCcHHHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence            1235688888888999999999999999999999999999998899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.67  E-value=2.8e-16  Score=115.94  Aligned_cols=113  Identities=25%  Similarity=0.241  Sum_probs=95.9

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK  163 (234)
Q Consensus        84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (234)
                      ++.+++++.++.++++.|.+.+.+.+||+|++++++|+++.+|+.+......                           .
T Consensus         3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~~---------------------------~   55 (124)
T cd04608           3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSGK---------------------------V   55 (124)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHhc---------------------------c
Confidence            5788999999999999999999999999998899999999999986432111                           1


Q ss_pred             cCCCcccccccCCCeEecCCCCHHHHHHHHH---------HcCCCEEEEEcCCCcEEEEEehHHHHHHH
Q 026712          164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLL---------ETKYRRLPVVDGYGKLVGLITRGNVVRAA  223 (234)
Q Consensus       164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~---------~~~~~~vpVv~~~~~~vGiit~~dll~~l  223 (234)
                      ....++.++|.+++.++.+++++.+++++|.         +.+...+||++++|+++|+||..|+++++
T Consensus        56 ~~~~~v~~im~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~~  124 (124)
T cd04608          56 QPSDPVSKALYKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSYI  124 (124)
T ss_pred             CCCCcHHHHhhccceecCCCCCHHHHHhhcccCCceEEEeccccccccccccccceEEEEehhHhhhhC
Confidence            3457899999999999999999999999653         33567888998789999999999999863

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=99.67  E-value=1e-15  Score=110.71  Aligned_cols=109  Identities=30%  Similarity=0.441  Sum_probs=92.3

Q ss_pred             CceeecCCCCHHHHHHHHHhCC-CCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHh
Q 026712           84 DLHAVKTTTTVDEALERLVEKR-ITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLS  162 (234)
Q Consensus        84 ~~~~v~~~~~v~~a~~~~~~~~-~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (234)
                      ++.++++++++.+|.+.|.+.+ ...+||+|++|+++|+++.+|+.+...                             .
T Consensus         2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~-----------------------------~   52 (114)
T cd04801           2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPT-----------------------------S   52 (114)
T ss_pred             CcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHHH-----------------------------h
Confidence            5788999999999999997664 788999998899999999999986421                             0


Q ss_pred             hcCCCcccccccC--CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712          163 KTNGKVVGDLMTP--APLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR  221 (234)
Q Consensus       163 ~~~~~~v~~im~~--~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~  221 (234)
                      .....++.++|..  .++++.+++++.++++.|.+++.+++||++++|+++|+++..|+++
T Consensus        53 ~~~~~~v~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~  113 (114)
T cd04801          53 QWAQTTVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR  113 (114)
T ss_pred             hccccchhhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence            1123568888864  3678999999999999999999999999997789999999999875

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=99.67  E-value=9.4e-16  Score=134.67  Aligned_cols=125  Identities=26%  Similarity=0.349  Sum_probs=109.6

Q ss_pred             cCccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCC-CcEEEEEehHHHhhhhccCCCCCCCCCCCCCcc
Q 026712           70 NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDD-WKLVGVVSDYDLLALDSISGGNQNDTSLFPNVN  148 (234)
Q Consensus        70 ~~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~  148 (234)
                      ..+.+|+++|+++.++.+++.++++.++.+.+.+++++++||++++ ++++|+|+.+|++....                
T Consensus       188 l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~----------------  251 (408)
T TIGR03520       188 FGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLN----------------  251 (408)
T ss_pred             cCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhc----------------
Confidence            4577999999987789999999999999999999999999999875 68999999999985421                


Q ss_pred             chhhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHh
Q 026712          149 STWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQI  226 (234)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~  226 (234)
                                     ....++.++|. ++.++++++++.++++.|.+++.+..+|+|+.|.++|+||.+||++.+...
T Consensus       252 ---------------~~~~~l~~~~~-~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~eDileeivge  313 (408)
T TIGR03520       252 ---------------KKNFDWQSLLR-EPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEIVGD  313 (408)
T ss_pred             ---------------cCCCCHHHHcC-CCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHHHhCC
Confidence                           11234677775 488999999999999999999999999999989999999999999999743

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=99.67  E-value=1e-15  Score=136.22  Aligned_cols=124  Identities=24%  Similarity=0.375  Sum_probs=110.1

Q ss_pred             cCccccccccccCCCceeecCCCCHHHHHHHHHh-----CCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCC
Q 026712           70 NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVE-----KRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLF  144 (234)
Q Consensus        70 ~~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~-----~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~  144 (234)
                      .+..+++++|++  ++.+++++.++.++.+.|.+     .+...+||+|++++++|+|+.+|++..              
T Consensus       128 ~~e~tvg~iMt~--~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl~a--------------  191 (449)
T TIGR00400       128 YSDDSAGRIMTI--EYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLILA--------------  191 (449)
T ss_pred             CCcchHHHhCcC--ceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHhcC--------------
Confidence            346789999998  89999999999999999975     345678999988999999999999753              


Q ss_pred             CCccchhhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHH
Q 026712          145 PNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAAL  224 (234)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~  224 (234)
                                         ..+.+++++|.++++++++++++.+|++.|.+++...+||||++|+++|+||.+|+++.+.
T Consensus       192 -------------------~~~~~v~~im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~  252 (449)
T TIGR00400       192 -------------------KPEEILSSIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQ  252 (449)
T ss_pred             -------------------CCCCcHHHHhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHH
Confidence                               2345799999998999999999999999999999999999998999999999999999998


Q ss_pred             Hhhh
Q 026712          225 QIKR  228 (234)
Q Consensus       225 ~~~~  228 (234)
                      +...
T Consensus       253 ~~~~  256 (449)
T TIGR00400       253 SEAT  256 (449)
T ss_pred             hhhH
Confidence            7654

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.67  E-value=1.7e-15  Score=109.15  Aligned_cols=110  Identities=26%  Similarity=0.490  Sum_probs=95.2

Q ss_pred             ceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhhc
Q 026712           85 LHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSKT  164 (234)
Q Consensus        85 ~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (234)
                      +.++.+++++.++.+.|.+.+...+||+|++++++|+++.+|+.+.....                           ...
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~~~---------------------------~~~   55 (113)
T cd04615           3 PSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALES---------------------------EEL   55 (113)
T ss_pred             CEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhhhh---------------------------hhh
Confidence            57889999999999999999989999999889999999999998642110                           012


Q ss_pred             CCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712          165 NGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR  221 (234)
Q Consensus       165 ~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~  221 (234)
                      ...++.++|..++.++..++++.++++.|.+++.+.+||++++|+++|+++..|+++
T Consensus        56 ~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~  112 (113)
T cd04615          56 KDAKVREVMNSPVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDILR  112 (113)
T ss_pred             cCCcHHHhccCCceEECCCCcHHHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence            345788899888999999999999999999999999999998899999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.67  E-value=1.8e-15  Score=106.56  Aligned_cols=94  Identities=23%  Similarity=0.496  Sum_probs=86.3

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK  163 (234)
Q Consensus        84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (234)
                      ++.++.+++++.+|++.|.+.+.+.+||+|++|+++|+++.+|+.+.                                 
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~---------------------------------   48 (96)
T cd04614           2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAK---------------------------------   48 (96)
T ss_pred             CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcC---------------------------------
Confidence            57889999999999999998999999999988999999999999753                                 


Q ss_pred             cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712          164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR  221 (234)
Q Consensus       164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~  221 (234)
                                 ..+.++.+++++.++++.|.+++.+++||++++|+++|+||++|+++
T Consensus        49 -----------~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~   95 (96)
T cd04614          49 -----------SEVVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLLK   95 (96)
T ss_pred             -----------CCcEEecCCCCHHHHHHHHHHhCCCeeeEECCCCcEEEEEEHHHhhc
Confidence                       01888999999999999999999999999997799999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.67  E-value=1.7e-15  Score=110.66  Aligned_cols=121  Identities=34%  Similarity=0.506  Sum_probs=98.3

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK  163 (234)
Q Consensus        84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (234)
                      ++.++.+++++.++.+.|.+.+++.+||++++|+++|+++..++.+.......... .+                 ....
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~-~~-----------------~~~~   63 (122)
T cd04803           2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALSSLSDNG-EE-----------------SLTK   63 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHhcccccccc-cc-----------------cccc
Confidence            56789999999999999999999999999988999999999999875321110000 00                 0001


Q ss_pred             cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHH
Q 026712          164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRA  222 (234)
Q Consensus       164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~  222 (234)
                      ....++.++|..+++++.+++++.++++.|.+.+.+.+||++++|+++|+||..|++++
T Consensus        64 ~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~~  122 (122)
T cd04803          64 ERDVPVAEVMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLRL  122 (122)
T ss_pred             ccCcCHHHhhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhcC
Confidence            23457888998889999999999999999999999999999977899999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.67  E-value=2.1e-15  Score=111.24  Aligned_cols=124  Identities=23%  Similarity=0.321  Sum_probs=93.3

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK  163 (234)
Q Consensus        84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (234)
                      ++.++++++++.++++.|.+.++..+||+|++|+++|+++..|+.+...... ....          +...... +... 
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~~~~~-~~~~----------~~~~~~~-~~~~-   68 (126)
T cd04642           2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLLSPD-DLLL----------YRTITFK-ELSE-   68 (126)
T ss_pred             CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhhcCcc-hhhc----------ccchhhh-hhhh-
Confidence            5788999999999999999889999999998899999999999987531111 0000          0000000 0000 


Q ss_pred             cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712          164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR  221 (234)
Q Consensus       164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~  221 (234)
                       .-....+.|..++.++++++++.++++.|.+++.+++||+|++|+++|+||..|+++
T Consensus        69 -~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~  125 (126)
T cd04642          69 -KFTDSDGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS  125 (126)
T ss_pred             -hcccccccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence             001223456778999999999999999999999999999998899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.67  E-value=1.9e-15  Score=113.18  Aligned_cols=132  Identities=27%  Similarity=0.365  Sum_probs=98.5

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhh-hHHHHHHHh
Q 026712           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKT-FNELQRLLS  162 (234)
Q Consensus        84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  162 (234)
                      ++.++.+++++.+|++.|.+.+...+||+|++++++|+++..|+.+.........    +.. ..+.|.+ +.+......
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~   76 (135)
T cd04621           2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEFEDNERG----LPK-KSIKMKRKAGQKRYRYV   76 (135)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHhhcccccc----cch-hhhhhhhhccccccccc
Confidence            5678899999999999999988899999999999999999999987642111000    000 0000000 000011111


Q ss_pred             hcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712          163 KTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR  221 (234)
Q Consensus       163 ~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~  221 (234)
                      .....++.++|.+++..+.+++++.++++.|.+.+.+++||+++ |+++|+|+..|+++
T Consensus        77 ~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~  134 (135)
T cd04621          77 KEVPLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR  134 (135)
T ss_pred             ccccccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence            12345789999988999999999999999999999999999995 99999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.67  E-value=1.3e-15  Score=109.85  Aligned_cols=112  Identities=38%  Similarity=0.549  Sum_probs=95.7

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK  163 (234)
Q Consensus        84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (234)
                      ++.++++++++.++.+.|.+.+...+||+|++++++|+|+..|+.+.+....                         ...
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~-------------------------~~~   56 (114)
T cd04629           2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESS-------------------------YHC   56 (114)
T ss_pred             CCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhhhhh-------------------------hcc
Confidence            5678999999999999998888888999998899999999999987532110                         001


Q ss_pred             cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712          164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR  221 (234)
Q Consensus       164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~  221 (234)
                      ....++.++|.+++.++.+++++.++++.|.+++.+.+||+|+ |+++|+||..|+++
T Consensus        57 ~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~  113 (114)
T cd04629          57 DGVATVRDIMTTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR  113 (114)
T ss_pred             CCCccHHHHhccCceEECCCCcHHHHHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence            2346788999888999999999999999999999999999996 99999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=99.66  E-value=1.2e-15  Score=109.56  Aligned_cols=102  Identities=38%  Similarity=0.496  Sum_probs=89.9

Q ss_pred             ecCCCCHHHHHHHHHhCC-----CCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHh
Q 026712           88 VKTTTTVDEALERLVEKR-----ITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLS  162 (234)
Q Consensus        88 v~~~~~v~~a~~~~~~~~-----~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (234)
                      +.+++++.++.+.|.+.+     +..+||+|++++++|+|+.+++.+.                                
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~~--------------------------------   49 (109)
T cd04606           2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLLA--------------------------------   49 (109)
T ss_pred             ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhcC--------------------------------
Confidence            578899999999998766     4679999988999999999999752                                


Q ss_pred             hcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHH
Q 026712          163 KTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRA  222 (234)
Q Consensus       163 ~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~  222 (234)
                       ....++.++|.+++.++.+++++.++++.|.+.+.+.+||++++|+++|+|+..|+++.
T Consensus        50 -~~~~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~  108 (109)
T cd04606          50 -DPDTPVSDIMDTDVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVIDV  108 (109)
T ss_pred             -CCcchHHHHhCCCCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence             12356888888889999999999999999999999999999988999999999999975

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.66  E-value=1.4e-15  Score=110.03  Aligned_cols=114  Identities=28%  Similarity=0.394  Sum_probs=93.9

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK  163 (234)
Q Consensus        84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (234)
                      ++.++++++++.++.+.|.+.+.+.+||+|++++++|+++.+|+.+....... .           .+          ..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~-~-----------~~----------~~   59 (116)
T cd04643           2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKGLEN-L-----------DL----------ER   59 (116)
T ss_pred             CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhhccCc-h-----------hH----------HH
Confidence            57889999999999999999999999999988999999999999875321100 0           00          00


Q ss_pred             cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712          164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR  221 (234)
Q Consensus       164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~  221 (234)
                      ....++.++|.+++.++.+++++.++++.|.+.+  .+||++++|+++|+||..|+++
T Consensus        60 ~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~  115 (116)
T cd04643          60 LVDLKVIDVMNTDVPVIIDDADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILK  115 (116)
T ss_pred             HhCCcHHHHhcCCCceecCCCCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhc
Confidence            0246788999988999999999999999998765  5999998899999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.66  E-value=1.8e-15  Score=111.07  Aligned_cols=119  Identities=20%  Similarity=0.212  Sum_probs=92.2

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCeeEEEcCC-CcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHh
Q 026712           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDD-WKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLS  162 (234)
Q Consensus        84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (234)
                      ++.++++++++.+|.+.|.+.++..+||+|++ |+++|+|+..|+.+..........          .+.      . . 
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~----------~~~------~-~-   63 (123)
T cd04627           2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFP----------GLD------P-L-   63 (123)
T ss_pred             CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhcc----------chh------h-h-
Confidence            57889999999999999998888999999987 899999999999875311100000          000      0 0 


Q ss_pred             hcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHH
Q 026712          163 KTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVV  220 (234)
Q Consensus       163 ~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll  220 (234)
                      ......+.++|..++.++.+++++.+|++.|.+++.+++||+|++|+++|+||..|+-
T Consensus        64 ~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~  121 (123)
T cd04627          64 YPIPLRDLTIGTSDVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVR  121 (123)
T ss_pred             hhhhhhhcccCcCCceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhh
Confidence            0001123356778899999999999999999999999999999889999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.66  E-value=4.3e-15  Score=110.45  Aligned_cols=131  Identities=37%  Similarity=0.596  Sum_probs=100.0

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK  163 (234)
Q Consensus        84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (234)
                      ++.++.+++++.++.+.|.+.+.+.+||+|++++++|+++..|+.+............ .+.     .-.+.+ ......
T Consensus         2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~~~~~~~~~~~-~~~-----~~~~~~-~~~~~~   74 (132)
T cd04636           2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYKGKGLFYVT-LLY-----SVIFLD-ESKIKK   74 (132)
T ss_pred             CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHHhccCCccccc-ccc-----cccccc-hHHHHH
Confidence            5688999999999999999888899999998899999999999987643211100000 000     000000 122233


Q ss_pred             cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHH
Q 026712          164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRA  222 (234)
Q Consensus       164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~  222 (234)
                      ....++.++|.+++..+.+++++.++++.|.+.+.+.+||+++ |+++|++|+.|++++
T Consensus        75 ~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~~  132 (132)
T cd04636          75 LLGKKVEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIRS  132 (132)
T ss_pred             HcCCCHHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhcC
Confidence            3445788999888999999999999999999999999999996 999999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.65  E-value=2.5e-15  Score=108.25  Aligned_cols=111  Identities=34%  Similarity=0.551  Sum_probs=96.3

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK  163 (234)
Q Consensus        84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (234)
                      ++.++++++++.++.+.|.+.++..+||+|++|+++|+++..|+.+......                           .
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~---------------------------~   54 (114)
T cd04613           2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREILFDPS---------------------------L   54 (114)
T ss_pred             CceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHHHhccc---------------------------c
Confidence            5788999999999999999888889999998899999999999986521100                           0


Q ss_pred             cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEehHHHHH
Q 026712          164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDG-YGKLVGLITRGNVVR  221 (234)
Q Consensus       164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~-~~~~vGiit~~dll~  221 (234)
                      ....++.++|.+++.++.+++++.++++.|.+.+.+.+||+++ +|+++|+++..|+++
T Consensus        55 ~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~  113 (114)
T cd04613          55 YDLVVASDIMTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS  113 (114)
T ss_pred             cccEEHHHhccCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence            1225788999999999999999999999999999999999997 789999999999975

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.65  E-value=2.8e-15  Score=107.80  Aligned_cols=109  Identities=28%  Similarity=0.454  Sum_probs=94.5

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK  163 (234)
Q Consensus        84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (234)
                      ++.++++++++.++.+.|.+.+.+.+||+|++|+++|+++.+|+.+.....                            .
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~----------------------------~   53 (111)
T cd04626           2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLDLFE----------------------------S   53 (111)
T ss_pred             CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHHhhc----------------------------c
Confidence            577899999999999999998999999999889999999999998642100                            0


Q ss_pred             cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712          164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR  221 (234)
Q Consensus       164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~  221 (234)
                      ....++.++|.+++.++.+++++.++++.|.+++.+.+||+++ |+++|+||..|+++
T Consensus        54 ~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~~  110 (111)
T cd04626          54 FLEKKVFNIVSQDVFYVNEEDTIDEALDIMREKQIGRLPVVDD-NKLIGVVRTKDILD  110 (111)
T ss_pred             cccCcHHHHhcCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence            1134688889888999999999999999999999999999996 99999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.65  E-value=2.7e-15  Score=110.07  Aligned_cols=123  Identities=30%  Similarity=0.461  Sum_probs=97.2

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCeeEEEcCC-CcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHh
Q 026712           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDD-WKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLS  162 (234)
Q Consensus        84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (234)
                      ++.++.++.++.+++++|.+.+...+||+|++ |+++|+|+..|+.+.+.....              |.....  ....
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~--------------~~~~~~--~~~~   65 (125)
T cd04631           2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEK--------------FNKIKT--GNGL   65 (125)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccch--------------hccccc--cccc
Confidence            57889999999999999999898899999987 999999999999875321100              000000  0000


Q ss_pred             hcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHH
Q 026712          163 KTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRA  222 (234)
Q Consensus       163 ~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~  222 (234)
                      .....++.++|.++++++++++++.++++.|.+.+.+.+||++++|+++|+||..|++++
T Consensus        66 ~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~~  125 (125)
T cd04631          66 EAINEPVRSIMTRNVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLKA  125 (125)
T ss_pred             hhhhcCHHHHhcCCceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhcC
Confidence            112356888888889999999999999999999999999999977999999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=99.65  E-value=3.9e-15  Score=106.17  Aligned_cols=104  Identities=37%  Similarity=0.592  Sum_probs=93.1

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK  163 (234)
Q Consensus        84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (234)
                      ++.+++.+.++.++.+.|.+.+...+||+|+ ++++|+++..|+...                                 
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~g~v~~~~l~~~---------------------------------   48 (107)
T cd04610           3 DVITVSPDNTVKDVIKLIKETGHDGFPVVDN-GKVVGIVSARDLLGK---------------------------------   48 (107)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhcc---------------------------------
Confidence            6788999999999999998888888999997 999999999999752                                 


Q ss_pred             cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712          164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR  221 (234)
Q Consensus       164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~  221 (234)
                      ....++.++|...+.++.+++++.++++.|.+++.+.+||++++|+++|+|+..|+++
T Consensus        49 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~  106 (107)
T cd04610          49 DPDETVEEIMSKDLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVIR  106 (107)
T ss_pred             CccccHHHhCCCCCeEECCCCCHHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence            1234688899888999999999999999999999999999998899999999999985

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=99.65  E-value=4.1e-15  Score=107.18  Aligned_cols=111  Identities=30%  Similarity=0.389  Sum_probs=95.8

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK  163 (234)
Q Consensus        84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (234)
                      ++.++++++++.++.+.|.+.+.+.+||+|++|+++|+++..++.+.+....                           .
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~~~~~~~~---------------------------~   55 (114)
T cd04604           3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRALEKGL---------------------------D   55 (114)
T ss_pred             cccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHHHHHhccC---------------------------c
Confidence            5678899999999999998888889999998899999999999987532111                           0


Q ss_pred             cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712          164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR  221 (234)
Q Consensus       164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~  221 (234)
                      ....++.++|.+++.++.+++++.++++.|.+++.+.+||++++|+++|+|+..||++
T Consensus        56 ~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~  113 (114)
T cd04604          56 ILTLPVADVMTRNPKTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLLR  113 (114)
T ss_pred             cccCCHHHhhccCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence            1224688999888999999999999999999999999999998899999999999975

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=99.65  E-value=5.4e-15  Score=106.07  Aligned_cols=109  Identities=32%  Similarity=0.507  Sum_probs=94.8

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK  163 (234)
Q Consensus        84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (234)
                      ++.++++++++.++.+.|.+.+...+||+++ ++++|+++.+|+.+......                            
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~~l~~~~~~~~----------------------------   52 (111)
T cd04611           2 QILTCPPDTSLAEAASRMRERRISSIVVVDD-GRPLGIVTERDILRLLASGP----------------------------   52 (111)
T ss_pred             CceEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEeHHHHHHHHhcCC----------------------------
Confidence            4678999999999999999888889999987 89999999999987531100                            


Q ss_pred             cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712          164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR  221 (234)
Q Consensus       164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~  221 (234)
                      ....++.++|.++++++.+++++.++++.|.+.+.+.+||+|++|+++|+|+.+|+++
T Consensus        53 ~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~  110 (111)
T cd04611          53 DLQTPVGEVMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ  110 (111)
T ss_pred             CCCcCHHHhcCCCceEECCCCCHHHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence            1346788899888999999999999999999999999999998899999999999975

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.64  E-value=4.6e-15  Score=108.43  Aligned_cols=120  Identities=23%  Similarity=0.426  Sum_probs=97.1

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK  163 (234)
Q Consensus        84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (234)
                      ++.++.+++++.++.+.|.+.+++.+||+|++|+++|+++..|+.+.........          ..+        ....
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~----------~~~--------~~~~   63 (122)
T cd04635           2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVRTSVE----------DQQ--------RTQT   63 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhhcccccccc----------chh--------hhhh
Confidence            5788999999999999999888899999998899999999999986421110000          000        0001


Q ss_pred             cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712          164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR  221 (234)
Q Consensus       164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~  221 (234)
                      ....++.++|..+++++..++++.++++.|.+++.+.+||++++|+++|++++.|+++
T Consensus        64 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~  121 (122)
T cd04635          64 KASPTVEKIMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK  121 (122)
T ss_pred             hccCcHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence            2345688888888999999999999999999999999999998899999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.64  E-value=4.3e-15  Score=106.41  Aligned_cols=106  Identities=46%  Similarity=0.623  Sum_probs=92.8

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK  163 (234)
Q Consensus        84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (234)
                      ++.+++.+.++.++.+.|.+.+...+||+|++|+++|+++.+++.+..                                
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~--------------------------------   50 (110)
T cd04601           3 DPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRFET--------------------------------   50 (110)
T ss_pred             CCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeeecc--------------------------------
Confidence            578899999999999999988889999999889999999999986421                                


Q ss_pred             cCCCcccccccCCCeEecC-CCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712          164 TNGKVVGDLMTPAPLVVHE-NTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR  221 (234)
Q Consensus       164 ~~~~~v~~im~~~~~~v~~-~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~  221 (234)
                      ....++.++|...+..+.. ++++.++++.|.+.+.+.+||++++|+++|+|+.+|+++
T Consensus        51 ~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~  109 (110)
T cd04601          51 DLDKPVSEVMTPENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK  109 (110)
T ss_pred             cCCCCHHHhcccCceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence            1235688888777777777 999999999999999999999998899999999999985

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.64  E-value=6.7e-15  Score=105.73  Aligned_cols=109  Identities=33%  Similarity=0.523  Sum_probs=94.0

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK  163 (234)
Q Consensus        84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (234)
                      ++.+++.+.++.++.+.|.+.+...+||+|+ ++++|+++..|+.+.+....                           .
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~---------------------------~   53 (111)
T cd04800           2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD-GRLVGIVTDRDLRNRVVAEG---------------------------L   53 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHhccC---------------------------C
Confidence            5788999999999999998888889999997 99999999999986422111                           0


Q ss_pred             cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712          164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR  221 (234)
Q Consensus       164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~  221 (234)
                      ....++.++|..+++++.+++++.++++.|.+++.+++||+++ |+++|+++..|+++
T Consensus        54 ~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~  110 (111)
T cd04800          54 DPDTPVSEVMTAPPITIPPDATVFEALLLMLERGIHHLPVVDD-GRLVGVISATDLLR  110 (111)
T ss_pred             CccCCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence            1235688889889999999999999999999999999999996 99999999999985

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.64  E-value=7.7e-15  Score=105.25  Aligned_cols=108  Identities=34%  Similarity=0.456  Sum_probs=94.4

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK  163 (234)
Q Consensus        84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (234)
                      ++.++++++++.++.+.|.+.+++.+||+++ ++++|+++.+|+.+.....                             
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~~l~~~~~~~-----------------------------   51 (110)
T cd04588           2 PLITLNPNATLREAARLFNTHHIHGAPVVDD-GKLVGIVTLSDIAHAIARG-----------------------------   51 (110)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhcc-----------------------------
Confidence            5788999999999999999989999999998 9999999999998752100                             


Q ss_pred             cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712          164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR  221 (234)
Q Consensus       164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~  221 (234)
                      ....++.++|..++.++.+++++.++++.|.+.+.+.+||++++|+++|+|+..|+++
T Consensus        52 ~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~  109 (110)
T cd04588          52 LELAKVKDVMTKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILR  109 (110)
T ss_pred             ccccCHHHHhcCCceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence            1125688888888999999999999999999999999999997799999999999975

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=99.64  E-value=1.3e-15  Score=133.52  Aligned_cols=125  Identities=22%  Similarity=0.362  Sum_probs=113.1

Q ss_pred             cCccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccc
Q 026712           70 NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNS  149 (234)
Q Consensus        70 ~~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~  149 (234)
                      .-.+++++++..  +.+++++.+++.+|.+.|.+.+++.+.+++.++...||||.+|+.++....+.             
T Consensus       146 ~~~trv~~~~~~--~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g~-------------  210 (610)
T COG2905         146 FILTRVGEVKTL--PAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGR-------------  210 (610)
T ss_pred             HHHHHHHHHhcC--CCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcCC-------------
Confidence            335679999988  88999999999999999999999999999999999999999999987554443             


Q ss_pred             hhhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHH
Q 026712          150 TWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAAL  224 (234)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~  224 (234)
                                    ....+|+++|+.++++++..+.+.+|+-+|.+++++++||++ +|+++|+||..||++...
T Consensus       211 --------------~~~~~V~evmT~p~~svd~~~~~feAml~m~r~~I~hl~V~e-~gq~~Gilt~~dIl~l~s  270 (610)
T COG2905         211 --------------SKTQKVSEVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTE-DGQPLGILTLTDILRLFS  270 (610)
T ss_pred             --------------CcccchhhhhccCceeecCcchHHHHHHHHHHhCCceeeeec-CCeeeEEeeHHHHHHhhC
Confidence                          345889999999999999999999999999999999999998 799999999999998765

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.64  E-value=6.2e-15  Score=104.75  Aligned_cols=103  Identities=34%  Similarity=0.551  Sum_probs=91.8

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK  163 (234)
Q Consensus        84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (234)
                      ++.++++++++.++.+.|.+.+...+||+| +++++|+++.+|+.+.                                 
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-~~~~~Giv~~~~l~~~---------------------------------   47 (105)
T cd04599           2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE-DGKLVGIITSRDVRRA---------------------------------   47 (105)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEehHHhhcc---------------------------------
Confidence            467889999999999999988888999998 5899999999999863                                 


Q ss_pred             cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712          164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR  221 (234)
Q Consensus       164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~  221 (234)
                      ....++.++|..++.++++++++.++++.|.+++...+||+++ |+++|+||..|++.
T Consensus        48 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~~  104 (105)
T cd04599          48 HPNRLVADAMTREVVTISPEASLLEAKRLMEEKKIERLPVLRE-RKLVGIITKGTIAL  104 (105)
T ss_pred             cccCCHHHHccCCCEEECCCCCHHHHHHHHHHcCCCEeeEEEC-CEEEEEEEHHHhcc
Confidence            1234678889888999999999999999999999999999996 99999999999873

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.64  E-value=5.5e-15  Score=106.98  Aligned_cols=106  Identities=33%  Similarity=0.537  Sum_probs=92.3

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCeeEEEcC---CCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHH
Q 026712           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDD---DWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRL  160 (234)
Q Consensus        84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~---~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (234)
                      ++.++.+++++.++.+.|.+.+...+||+|+   +|+++|+++.+|+....                             
T Consensus         3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~-----------------------------   53 (114)
T cd04602           3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLT-----------------------------   53 (114)
T ss_pred             CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhh-----------------------------
Confidence            4678899999999999998888889999997   78999999999986421                             


Q ss_pred             HhhcCCCcccccccCCCeEecC--CCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712          161 LSKTNGKVVGDLMTPAPLVVHE--NTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR  221 (234)
Q Consensus       161 ~~~~~~~~v~~im~~~~~~v~~--~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~  221 (234)
                         ....++.++|...+..+..  ++++.++++.|.+++.+.+||++++|+++|+||..|+++
T Consensus        54 ---~~~~~v~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~  113 (114)
T cd04602          54 ---DSETPLSEVMTPREVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK  113 (114)
T ss_pred             ---ccCCCHHHhcCCCceEEECCCCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence               1234688899877788866  999999999999999999999998899999999999975

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=99.64  E-value=7.3e-15  Score=105.46  Aligned_cols=107  Identities=30%  Similarity=0.483  Sum_probs=94.4

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK  163 (234)
Q Consensus        84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (234)
                      ++.+++.+.++.++.+.|.+.+...+||+|+ |+++|+++..|+.+....                             .
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~dl~~~~~~-----------------------------~   52 (110)
T cd04595           3 PVKTVRPEATIEEARELLLRYGHTALPVVEG-GRVVGIISRRDVEKALRH-----------------------------G   52 (110)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCeeeEeeC-CEEEEEEEHHHHHHHHhc-----------------------------c
Confidence            5788999999999999999888889999998 999999999999864210                             0


Q ss_pred             cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712          164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR  221 (234)
Q Consensus       164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~  221 (234)
                      ....++.++|..+++++.+++++.++++.|.+++.+.+||++ +|+++|+||..|+++
T Consensus        53 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~  109 (110)
T cd04595          53 LGHAPVKDYMSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR  109 (110)
T ss_pred             cccCcHHHHhcCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence            134678889988999999999999999999999999999999 799999999999975

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.64  E-value=7.8e-15  Score=106.14  Aligned_cols=110  Identities=24%  Similarity=0.445  Sum_probs=91.0

Q ss_pred             CceeecCCCCHHHHHHHHHhCC-CCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHh
Q 026712           84 DLHAVKTTTTVDEALERLVEKR-ITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLS  162 (234)
Q Consensus        84 ~~~~v~~~~~v~~a~~~~~~~~-~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (234)
                      ++.+++++.++.++.+.|.+.+ ...++|++ +|+++|+++..|+.+......                           
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~---------------------------   53 (115)
T cd04620           2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE-KGRLLGIFTERDIVRLTAIGK---------------------------   53 (115)
T ss_pred             CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC-CCcEEEEEeHHHHHHHHhcCC---------------------------
Confidence            4678899999999999998877 66677777 589999999999986431100                           


Q ss_pred             hcCCCcccccccCCCeEecCC--CCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712          163 KTNGKVVGDLMTPAPLVVHEN--TNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR  221 (234)
Q Consensus       163 ~~~~~~v~~im~~~~~~v~~~--~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~  221 (234)
                      .....++.++|..+++++.++  +++.++++.|.+++.+.+||+|++|+++|+||+.|+++
T Consensus        54 ~~~~~~i~~~~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~  114 (115)
T cd04620          54 DLSDLPIGEVMTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ  114 (115)
T ss_pred             CccccCHHHhcCCCcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence            012356888998888889887  68999999999999999999998899999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.63  E-value=8.5e-15  Score=105.27  Aligned_cols=110  Identities=22%  Similarity=0.296  Sum_probs=94.1

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK  163 (234)
Q Consensus        84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (234)
                      ++.+++++.++.++.+.|.+.+...++|+|+ ++++|+++.+|+.+......                           .
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~---------------------------~   53 (111)
T cd04589           2 PPLIVDASTSIRDAARLMREHGADALLVRDG-DPRLGIVTRTDLLDAVLLDG---------------------------L   53 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEecC-CeEEEEEEHHHHHHHHHcCC---------------------------C
Confidence            4678899999999999999888888999998 89999999999986532110                           0


Q ss_pred             cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHH
Q 026712          164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRA  222 (234)
Q Consensus       164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~  222 (234)
                      ....++.++|.+++..+.+++++.++++.|.+++.+.+||++ +|+++|+||..|++++
T Consensus        54 ~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~G~it~~dl~~~  111 (111)
T cd04589          54 PSSTPVGEIATFPLITVDPDDFLFNALLLMTRHRIHRVVVRE-GGEVVGVLEQTDLLSF  111 (111)
T ss_pred             CCCCCHHHHhCCCcEEECCCCcHHHHHHHHHHhCccEEEEee-CCEEEEEEEhHHhhcC
Confidence            134578889988899999999999999999999999999998 4899999999999863

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=99.63  E-value=6.4e-15  Score=105.85  Aligned_cols=108  Identities=32%  Similarity=0.456  Sum_probs=92.4

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCeeEEEcCC-CcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHh
Q 026712           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDD-WKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLS  162 (234)
Q Consensus        84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (234)
                      ++.++++++++.+|.+.|.+.+.+.+||++++ |+++|+++..|+.+.....                            
T Consensus         2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~----------------------------   53 (111)
T cd04590           2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEG----------------------------   53 (111)
T ss_pred             ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcC----------------------------
Confidence            57889999999999999998888999999988 9999999999998753110                            


Q ss_pred             hcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712          163 KTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR  221 (234)
Q Consensus       163 ~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~  221 (234)
                       ....++.+++ .++.++.+++++.++++.|.+++.+.+||++++|+++|+||+.|+++
T Consensus        54 -~~~~~~~~~~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~  110 (111)
T cd04590          54 -EEDLDLRDLL-RPPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE  110 (111)
T ss_pred             -CCcCCHHHHh-cCCeecCCCCcHHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence             1113466666 46888999999999999999999999999998899999999999975

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.63  E-value=8e-15  Score=105.59  Aligned_cols=111  Identities=33%  Similarity=0.500  Sum_probs=94.1

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK  163 (234)
Q Consensus        84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (234)
                      ++.++.+++++.++.+.|.+.+.+.+||+++ ++++|+|+..|+.+.......                          .
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~~--------------------------~   54 (113)
T cd04587           2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG-NKLVGIFTSKDIALRVVAQGL--------------------------D   54 (113)
T ss_pred             CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHHhcCC--------------------------C
Confidence            4678899999999999998888889999997 999999999999753221110                          0


Q ss_pred             cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712          164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR  221 (234)
Q Consensus       164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~  221 (234)
                      ....++.++|..++.++.+++++.++++.|.+++.+++||++++|+++|+|+..|++.
T Consensus        55 ~~~~~v~~i~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~  112 (113)
T cd04587          55 PESTLVERVMTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH  112 (113)
T ss_pred             cCcCCHHHhcCCCCeEEcCCCCHHHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence            1125788899888999999999999999999999999999997799999999999874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=99.63  E-value=3.6e-15  Score=111.28  Aligned_cols=128  Identities=34%  Similarity=0.610  Sum_probs=98.6

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHH----
Q 026712           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQR----  159 (234)
Q Consensus        84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  159 (234)
                      ++.++++++++.++.+.|.+.+...+||+|++++++|+++..|+.+.........         ...|-.......    
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~~~~~~~~---------~~~~~~~~~~~~~~~~   73 (135)
T cd04586           3 DVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAELGTERR---------RARWLDLLAGAEELAA   73 (135)
T ss_pred             CCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHhcccCcch---------hhhHHHHhcchHHHHH
Confidence            6788999999999999999999999999998899999999999986532111000         001110000000    


Q ss_pred             HHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712          160 LLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR  221 (234)
Q Consensus       160 ~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~  221 (234)
                      ........++.++|.+++.++.+++++.++++.|.+.+.+.+||+| +|+++|+|++.|+++
T Consensus        74 ~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~  134 (135)
T cd04586          74 AFVRSHGRKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLR  134 (135)
T ss_pred             HHHHhcCCCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence            0011234578899988899999999999999999999999999999 899999999999975

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.63  E-value=4.3e-15  Score=109.60  Aligned_cols=114  Identities=27%  Similarity=0.427  Sum_probs=91.2

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHh-
Q 026712           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLS-  162 (234)
Q Consensus        84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  162 (234)
                      ++.++..++++.++++.|.+.+...+||+|++|+++|+++..|+.+....                        ..... 
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~------------------------~~~~~~   57 (126)
T cd04640           2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPI------------------------KRIQEG   57 (126)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhh------------------------HHHHHc
Confidence            46788999999999999998888899999988999999999999852100                        00000 


Q ss_pred             --hcCCCcccccccCCCeEe------cCCCCHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEehHHHHH
Q 026712          163 --KTNGKVVGDLMTPAPLVV------HENTNLEDAARLLLETKYRRLPVVDGY-GKLVGLITRGNVVR  221 (234)
Q Consensus       163 --~~~~~~v~~im~~~~~~v------~~~~~l~~~~~~m~~~~~~~vpVv~~~-~~~vGiit~~dll~  221 (234)
                        .....++.++|..++..+      .+++++.++++.|.+++.+.+||+|++ |+++|+||..|+++
T Consensus        58 ~~~~~~~~v~~im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~  125 (126)
T cd04640          58 GISRSELTVADVMTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR  125 (126)
T ss_pred             CCCchheEHHHhcCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence              113456889997655443      368899999999999999999999976 79999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.63  E-value=1e-14  Score=107.66  Aligned_cols=124  Identities=26%  Similarity=0.370  Sum_probs=96.3

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK  163 (234)
Q Consensus        84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (234)
                      ++..+.+++++.+|.++|.+.+.+.+||+|++++++|+++.+|+.+.+........              +.....-...
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~~~~~~~~~--------------~~~~~~~~~~   67 (128)
T cd04632           2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVVRDRDKAR--------------TGDRSGEKER   67 (128)
T ss_pred             CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHHhhhhhhcc--------------hhhhhhhhhh
Confidence            57789999999999999999999999999998999999999999864321100000              0000000011


Q ss_pred             cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEc--CCCcEEEEEehHHHHH
Q 026712          164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVD--GYGKLVGLITRGNVVR  221 (234)
Q Consensus       164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~--~~~~~vGiit~~dll~  221 (234)
                      ....++.++|..+++++.+++++.++++.|.+.+.+.+||++  ++|+++|+||++|+++
T Consensus        68 ~~~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~  127 (128)
T cd04632          68 MLDLPVYDAMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR  127 (128)
T ss_pred             hccCcHHHHhcCCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence            234578899988899999999999999999999999999995  3589999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.62  E-value=1.2e-14  Score=104.27  Aligned_cols=109  Identities=37%  Similarity=0.614  Sum_probs=93.7

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK  163 (234)
Q Consensus        84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (234)
                      ++.++.+++++.++.+.|.+.+...+||+|+ ++++|+++..|+.+......                            
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~~~----------------------------   52 (111)
T cd04612           2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD-GRLVGIVTLADIRRVPAEGR----------------------------   52 (111)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC-CeEEEEEEHHHHHHHHhcCc----------------------------
Confidence            5788999999999999999888889999998 99999999999986421000                            


Q ss_pred             cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712          164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR  221 (234)
Q Consensus       164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~  221 (234)
                      ....++.++|..++.++.+++++.++++.|.+++.+.+||++++|+++|+|+..|+++
T Consensus        53 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~  110 (111)
T cd04612          53 EATVLVGDVMTRDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR  110 (111)
T ss_pred             ccccCHHHhccCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence            0113577888888999999999999999999999999999997799999999999975

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=99.62  E-value=6e-15  Score=131.15  Aligned_cols=121  Identities=25%  Similarity=0.304  Sum_probs=107.2

Q ss_pred             cCccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccc
Q 026712           70 NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNS  149 (234)
Q Consensus        70 ~~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~  149 (234)
                      ....++.++|.+  +++++.+++++.+++++|.+.+.+.+||+|+ ++++|+||.+|+...                   
T Consensus        85 v~~VKv~eim~~--~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~-gklvGIVT~rDL~~~-------------------  142 (475)
T TIGR01303        85 VAFVKSRDLVLD--TPITLAPHDTVSDAMALIHKRAHGAAVVILE-DRPVGLVTDSDLLGV-------------------  142 (475)
T ss_pred             Hhhcchhhcccc--CCeEECCCCCHHHHHHHHHhcCCeEEEEEEC-CEEEEEEEHHHhhcC-------------------
Confidence            446678889987  8899999999999999999999988988885 799999999999542                   


Q ss_pred             hhhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHh
Q 026712          150 TWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQI  226 (234)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~  226 (234)
                                    ....++.++|+.+++++++++++.+|+++|.+++++++||+|++|+++|+||.+||++.....
T Consensus       143 --------------~~~~~V~dIMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~~  205 (475)
T TIGR01303       143 --------------DRFTQVRDIMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIYT  205 (475)
T ss_pred             --------------CCCCCHHHHccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhCC
Confidence                          123579999999999999999999999999999999999999889999999999999876543

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.62  E-value=1.3e-14  Score=105.72  Aligned_cols=120  Identities=38%  Similarity=0.571  Sum_probs=96.6

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK  163 (234)
Q Consensus        84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (234)
                      ++.+++++.++.++.+.|.+.+...+||+|+ |+++|+++..|+.+..........          .+       .....
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~i~~~~l~~~~~~~~~~~~----------~~-------~~~~~   63 (122)
T cd04585           2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR-GKLVGIVTDRDLKLASPSKATTLD----------IW-------ELYYL   63 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHhCCcceeeEecC-CeEEEEEeHHHHHHhhhccccccc----------ch-------hhhhh
Confidence            5678999999999999999988899999997 999999999999875321111000          00       00000


Q ss_pred             cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712          164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR  221 (234)
Q Consensus       164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~  221 (234)
                      ....++.++|.+++.++.+++++.+++..|.+.+.+.+||++++|+++|+||..|+++
T Consensus        64 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~  121 (122)
T cd04585          64 LSKIKVSDIMTRDPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR  121 (122)
T ss_pred             hcccCHHHhccCCCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence            1235688889889999999999999999999999999999997799999999999986

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.62  E-value=5.3e-15  Score=132.34  Aligned_cols=119  Identities=24%  Similarity=0.333  Sum_probs=102.2

Q ss_pred             ccccccccC-CCceeecCCCCHHHHHHHHHhCCCCeeEEEcC---CCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccc
Q 026712           74 TVGDFMTKK-EDLHAVKTTTTVDEALERLVEKRITGFPVIDD---DWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNS  149 (234)
Q Consensus        74 ~v~~im~~~-~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~---~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~  149 (234)
                      +|+++|... .+..++++++++.+|+++|.+.+++.+||+|+   +++++|+||..|+.+..                  
T Consensus        95 kVk~~~~g~i~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~------------------  156 (502)
T PRK07107         95 RVKNYKAGFVVSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISR------------------  156 (502)
T ss_pred             HHHHHhcCCcCCCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccc------------------
Confidence            477777521 14578999999999999999999999999996   58999999999996420                  


Q ss_pred             hhhhhHHHHHHHhhcCCCcccccccC--CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHH
Q 026712          150 TWKTFNELQRLLSKTNGKVVGDLMTP--APLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAA  223 (234)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l  223 (234)
                                   ...+.++.++|++  +++++.+++++.+|+++|.+++++.+||+|++|+++|+||.+|+++..
T Consensus       157 -------------~~~~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~  219 (502)
T PRK07107        157 -------------MSLDTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHK  219 (502)
T ss_pred             -------------cCCCCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcc
Confidence                         1245679999986  788999999999999999999999999999889999999999999864

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=99.61  E-value=1.6e-14  Score=102.91  Aligned_cols=100  Identities=28%  Similarity=0.340  Sum_probs=89.6

Q ss_pred             eeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhhcC
Q 026712           86 HAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTN  165 (234)
Q Consensus        86 ~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (234)
                      .++++++++.++.+.|.+.+...+||+|+ ++++|+++.+|+.+.                                  .
T Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~----------------------------------~   48 (104)
T cd04594           4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY-NKFLGAVYLKDIENA----------------------------------T   48 (104)
T ss_pred             eEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHHhhh----------------------------------c
Confidence            57799999999999999999999999998 999999999999753                                  1


Q ss_pred             CCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712          166 GKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR  221 (234)
Q Consensus       166 ~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~  221 (234)
                      ..++.++|...+.++.+++++.++++.|.+++.+.+||++ +|+++|++|..|+++
T Consensus        49 ~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~~~~iGvit~~dl~~  103 (104)
T cd04594          49 YGDVVDYIVRGIPYVRLTSTAEEAWEVMMKNKTRWCPVVD-DGKFKGIVTLDSILD  103 (104)
T ss_pred             ccchhhhhhcCCcEEcCCCCHHHHHHHHHHcCcceEEEEE-CCEEEEEEEHHHhhc
Confidence            1346778888899999999999999999999999999998 699999999999875

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.61  E-value=2.5e-14  Score=102.99  Aligned_cols=111  Identities=36%  Similarity=0.627  Sum_probs=93.6

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK  163 (234)
Q Consensus        84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (234)
                      ++.++.+++++.+|.+.|.+.+.+.+||+|+ |+++|+++..|+.........                          .
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~i~~~~l~~~~~~~~~--------------------------~   54 (113)
T cd04622           2 DVVTVSPDDTIREAARLMREHDVGALPVCEN-DRLVGIVTDRDIVVRAVAEGR--------------------------D   54 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEhHHHHHHHhhccC--------------------------C
Confidence            5788999999999999999988999999997 999999999998632111100                          0


Q ss_pred             cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712          164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR  221 (234)
Q Consensus       164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~  221 (234)
                      ....++.++|...+.++.+++++.++++.|.+.+.+++||++++|+++|+|+..|+++
T Consensus        55 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~  112 (113)
T cd04622          55 PDTTTVGDVMTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR  112 (113)
T ss_pred             cccCCHHHhccCCccEECCCCCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence            1123488899888999999999999999999999999999997799999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.61  E-value=1.9e-14  Score=103.54  Aligned_cols=110  Identities=26%  Similarity=0.483  Sum_probs=91.5

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK  163 (234)
Q Consensus        84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (234)
                      ++.++.+++++.++.+.|.+.+...++|.+ +|+++|+++.+|+.+.......                          .
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~~--------------------------~   54 (112)
T cd04625           2 TIYTVAPETLLSEAVATMAEQDLGSLVVME-RGELVGLLTFREVLQAMAQHGA--------------------------G   54 (112)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCeEEEee-CCEEEEEEEHHHHHHHHHhcCC--------------------------c
Confidence            567899999999999999877777776665 5899999999999875321100                          0


Q ss_pred             cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712          164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR  221 (234)
Q Consensus       164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~  221 (234)
                      ....++.++|...+.++.+++++.++++.|.+++...+||++ +|+++|+||.+|+++
T Consensus        55 ~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~-~~~~~Gvvt~~dl~~  111 (112)
T cd04625          55 VLDTTVRAIMNPEPIVASPDDSIDEVRRLMVERHLRYLPVLD-GGTLLGVISFHDVAK  111 (112)
T ss_pred             hhcCCHHHHhCCCCeEECCCCCHHHHHHHHHHcCCCeeeEEE-CCEEEEEEEHHHhhc
Confidence            123578899988889999999999999999999999999999 699999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=99.61  E-value=7.7e-15  Score=122.27  Aligned_cols=114  Identities=32%  Similarity=0.360  Sum_probs=100.5

Q ss_pred             ccccccccccCCC-ceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccch
Q 026712           72 TYTVGDFMTKKED-LHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNST  150 (234)
Q Consensus        72 ~~~v~~im~~~~~-~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~  150 (234)
                      ..+|+++|.+  + +.++++++++.++.+.|.+.+.+.+||+|++|+++|+|+..|+.+.... .               
T Consensus       154 ~~~v~~im~~--~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~~-~---------------  215 (268)
T TIGR00393       154 LVKVKDLMQT--TDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALLG-G---------------  215 (268)
T ss_pred             hhhHHHHhCC--CCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHhc-C---------------
Confidence            4689999987  6 8999999999999999998889999999988999999999999875210 0               


Q ss_pred             hhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEe
Q 026712          151 WKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLIT  215 (234)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit  215 (234)
                                  .....++.++|.++++++.+++++.+|++.|.+++.+.+||+|++|+++|+|+
T Consensus       216 ------------~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~  268 (268)
T TIGR00393       216 ------------GSLKSEVRDFMTLGPKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH  268 (268)
T ss_pred             ------------CcccCcHHHhCCCCCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence                        12346799999999999999999999999999999999999998899999984

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.60  E-value=1.7e-14  Score=103.20  Aligned_cols=109  Identities=30%  Similarity=0.424  Sum_probs=91.0

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK  163 (234)
Q Consensus        84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (234)
                      ++.++.+++++.++.+.|.+.+.+.+||+++ ++++|+++.+|+.+.......                           
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~~---------------------------   53 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSIDESDLLDALIEGKA---------------------------   53 (110)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCceeeEeeC-CeeEEEEeHHHHHHHHhcccc---------------------------
Confidence            5678899999999999999999999999998 999999999999875321110                           


Q ss_pred             cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHH
Q 026712          164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRA  222 (234)
Q Consensus       164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~  222 (234)
                      ....++.++|.+++.++++++++.+++++|.+ . ..+||++++|+++|+|+.+|++++
T Consensus        54 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~~~~~~~Gvvt~~di~~~  110 (110)
T cd04609          54 KFSLPVREVMGEPLPTVDPDAPIEELSELLDR-G-NVAVVVDEGGKFVGIITRADLLKY  110 (110)
T ss_pred             ccCcCHHHHhcCCCceeCCCCcHHHHHHHHHh-C-CceeEEecCCeEEEEEeHHHhhcC
Confidence            11356888888889999999999999999987 3 347888878999999999999864

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.60  E-value=1.4e-14  Score=105.91  Aligned_cols=121  Identities=31%  Similarity=0.447  Sum_probs=95.9

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK  163 (234)
Q Consensus        84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (234)
                      ++.++++++++.++.+.|.+.+++.+||+|+ |+++|+++..++.+.+.......            ++...   ..  .
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~~~~------------~~~~~---~~--~   63 (122)
T cd04637           2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED-NELVGVISDRDYLKAISPFLGTA------------GETEK---DL--A   63 (122)
T ss_pred             CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC-CeEEEEEEHHHHHHHHHHHhccc------------cchHH---HH--H
Confidence            4678999999999999999999999999997 89999999999987532100000            00000   00  0


Q ss_pred             cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHH
Q 026712          164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRA  222 (234)
Q Consensus       164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~  222 (234)
                      ....++.++|..+++++.+++++.++++.|.+++...+||++++|+++|+++..|++++
T Consensus        64 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~~  122 (122)
T cd04637          64 TLNRRAHQIMTRDPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLKY  122 (122)
T ss_pred             HHHhHHHHhhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhhC
Confidence            11246888888889999999999999999999999999999988999999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.60  E-value=1.4e-14  Score=105.65  Aligned_cols=120  Identities=30%  Similarity=0.459  Sum_probs=96.1

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK  163 (234)
Q Consensus        84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (234)
                      ++.++++++++.++.+.|.+.+...+||+|+ |+++|+++..++.+..........               .  ......
T Consensus         2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~~~~~---------------~--~~~~~~   63 (121)
T cd04633           2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG-GKLVGIVTEKDIADALRSFRPLVR---------------D--RHQERR   63 (121)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC-CEEEEEEchHHHHHhhhhhhhccc---------------c--hhhhhh
Confidence            5788999999999999999888999999997 999999999999875321111000               0  000011


Q ss_pred             cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHH
Q 026712          164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRA  222 (234)
Q Consensus       164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~  222 (234)
                      ....++.++|..++.++.+++++.++++.|.+.+.+.+||+++ |+++|+|+..|++++
T Consensus        64 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~~  121 (121)
T cd04633          64 IRNLPVSDIMTRPVITIEPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILRY  121 (121)
T ss_pred             hhccCHHHHccCCceEECCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhcC
Confidence            2345688889888999999999999999999999999999996 999999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=99.60  E-value=1.4e-14  Score=128.81  Aligned_cols=119  Identities=35%  Similarity=0.551  Sum_probs=106.3

Q ss_pred             ccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCC---CcEEEEEehHHHhhhhccCCCCCCCCCCCCCcc
Q 026712           72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDD---WKLVGVVSDYDLLALDSISGGNQNDTSLFPNVN  148 (234)
Q Consensus        72 ~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~---~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~  148 (234)
                      ..+.++.|.+  ++.++++++++.++.++|.+.+++.+||+|++   ++++|+|+.+|+....                 
T Consensus        79 Vk~~~~~~~~--~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~-----------------  139 (450)
T TIGR01302        79 VKRAENGIIS--DPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVK-----------------  139 (450)
T ss_pred             hccccCceec--CceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhh-----------------
Confidence            3456788887  89999999999999999999999999999987   7999999999997421                 


Q ss_pred             chhhhhHHHHHHHhhcCCCccccccc-CCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHH
Q 026712          149 STWKTFNELQRLLSKTNGKVVGDLMT-PAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAAL  224 (234)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~v~~im~-~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~  224 (234)
                                     ....++.++|+ .+++++++++++.++++.|.+++.+.+||+|++|+++|+||.+||++.+.
T Consensus       140 ---------------~~~~~V~dvm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~~  201 (450)
T TIGR01302       140 ---------------DKGKPVSEVMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRRK  201 (450)
T ss_pred             ---------------cCCCCHHHhhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhccc
Confidence                           13467899998 58999999999999999999999999999999999999999999999864

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.59  E-value=5.1e-14  Score=101.26  Aligned_cols=110  Identities=32%  Similarity=0.505  Sum_probs=92.9

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK  163 (234)
Q Consensus        84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (234)
                      ++.+++++.++.++.+.|.+.+.+.+||+|++ +++|+++..|+.+.+.....                          .
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~G~v~~~dl~~~~~~~~~--------------------------~   54 (112)
T cd04802           2 NVITVDPDTTVYEAANIMTENNIGRLIVVDNE-KPVGIITERDLVKKVVSRNL--------------------------K   54 (112)
T ss_pred             CcEEECCCCCHHHHHHHHHHCCCCEEEEEECC-EEEEEEEHHHHHHHHhhccC--------------------------C
Confidence            56788999999999999998888999999964 99999999999875321100                          0


Q ss_pred             cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712          164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR  221 (234)
Q Consensus       164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~  221 (234)
                      ....++.++|.+++.++.+++++.++++.|.+++.+.+||+++ ++++|+|+..|+++
T Consensus        55 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~di~~  111 (112)
T cd04802          55 PREVPVGEVMSTPLITIDPNASLNEAAKLMAKHGIKRLPVVDD-DELVGIVTTTDIVM  111 (112)
T ss_pred             cccCCHHHhcCCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeC-CEEEEEEEhhhhhc
Confidence            1235688899888999999999999999999999999999995 49999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=99.59  E-value=2.4e-14  Score=128.53  Aligned_cols=117  Identities=35%  Similarity=0.485  Sum_probs=106.0

Q ss_pred             ccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhh
Q 026712           74 TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKT  153 (234)
Q Consensus        74 ~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (234)
                      .++++|.+  ++.++++++++.++.++|.+.+++.+||+|++++++|+|+.+|+....                      
T Consensus        88 ~~~dim~~--~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~~----------------------  143 (486)
T PRK05567         88 RSESGVVT--DPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRFET----------------------  143 (486)
T ss_pred             hhhhcccC--CCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhcc----------------------
Confidence            57788987  899999999999999999999999999999999999999999996421                      


Q ss_pred             hHHHHHHHhhcCCCccccccc-CCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHH
Q 026712          154 FNELQRLLSKTNGKVVGDLMT-PAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAAL  224 (234)
Q Consensus       154 ~~~~~~~~~~~~~~~v~~im~-~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~  224 (234)
                                ....++.++|. .+++++.+++++.++++.|.+++.+.+||+|++|+++|+||.+||++.+.
T Consensus       144 ----------~~~~~V~dim~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~  205 (486)
T PRK05567        144 ----------DLSQPVSEVMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEE  205 (486)
T ss_pred             ----------cCCCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhh
Confidence                      12357889998 78999999999999999999999999999999999999999999998864

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=99.58  E-value=3.4e-14  Score=127.40  Aligned_cols=113  Identities=24%  Similarity=0.323  Sum_probs=101.5

Q ss_pred             cccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcC---CCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhH
Q 026712           79 MTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDD---DWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFN  155 (234)
Q Consensus        79 m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~---~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (234)
                      |.+  +++++++++++.++.++|.+.+++.+||+|+   +++++|+||.+|+....                        
T Consensus       106 mi~--dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~------------------------  159 (505)
T PLN02274        106 FVS--DPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN------------------------  159 (505)
T ss_pred             ccC--CCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc------------------------
Confidence            656  7899999999999999999999999999987   47999999999996431                        


Q ss_pred             HHHHHHhhcCCCcccccccCC--CeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHH
Q 026712          156 ELQRLLSKTNGKVVGDLMTPA--PLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQ  225 (234)
Q Consensus       156 ~~~~~~~~~~~~~v~~im~~~--~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~  225 (234)
                              ....++.++|+++  ++++.+++++.++++.|.+++.+.+||+|++++++|+||++||++.+..
T Consensus       160 --------~~~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~  223 (505)
T PLN02274        160 --------DRETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGY  223 (505)
T ss_pred             --------ccCCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence                    2357899999876  7899999999999999999999999999988999999999999999875

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.57  E-value=5.3e-14  Score=102.49  Aligned_cols=119  Identities=35%  Similarity=0.506  Sum_probs=95.7

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK  163 (234)
Q Consensus        84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (234)
                      ++.++++++++.+|.+.|.+.+...+||+|++++++|+++..++.+..........                 ... ...
T Consensus         2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~-----------------~~~-~~~   63 (121)
T cd04584           2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDASPSPFTTLS-----------------EHE-LYL   63 (121)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHhhhhcccch-----------------hhh-hhh
Confidence            46789999999999999998888899999988999999999999764211100000                 000 001


Q ss_pred             cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712          164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR  221 (234)
Q Consensus       164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~  221 (234)
                      ....++.++|..+++++..++++.++++.|.+++.+.+||+++ |+++|+++..|+++
T Consensus        64 ~~~~~v~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~  120 (121)
T cd04584          64 LLKMPVKEIMTKDVITVHPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR  120 (121)
T ss_pred             hcCcCHHHHhhCCCeEECCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence            2345688889888999999999999999999999999999996 99999999999975

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.57  E-value=7.7e-14  Score=99.48  Aligned_cols=104  Identities=38%  Similarity=0.613  Sum_probs=91.2

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK  163 (234)
Q Consensus        84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (234)
                      ++.++..+.++.++...|.+.+.+.+||++++++++|+++.+++.+.                                 
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~~---------------------------------   48 (106)
T cd04638           2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLRN---------------------------------   48 (106)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhc---------------------------------
Confidence            56788999999999999998888899999988999999999999752                                 


Q ss_pred             cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712          164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR  221 (234)
Q Consensus       164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~  221 (234)
                      ....++.++|..++.++..++++.++++.|.+++.+.+||++ +|+++|+|+..|+++
T Consensus        49 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd-~~~~~G~it~~d~~~  105 (106)
T cd04638          49 PEEEQLALLMTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVD-DGKLVGIVTVADIVR  105 (106)
T ss_pred             cccchHHHHhcCCCceECCCCCHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHhhc
Confidence            112346777888899999999999999999999999999999 589999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.57  E-value=8.3e-14  Score=99.19  Aligned_cols=111  Identities=46%  Similarity=0.696  Sum_probs=94.1

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK  163 (234)
Q Consensus        84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (234)
                      ++.+++.+.++.++.+.|.+.+...+||++++++++|+++.+|+.+.......                           
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~---------------------------   54 (113)
T cd02205           2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGGL---------------------------   54 (113)
T ss_pred             CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHhccC---------------------------
Confidence            46788999999999999999888899999988999999999999875321110                           


Q ss_pred             cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712          164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR  221 (234)
Q Consensus       164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~  221 (234)
                      .....+.++|..++..+.+++++.++++.|.+.+.+.+||++++|+++|+++..|+++
T Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~  112 (113)
T cd02205          55 DPLVTVGDVMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR  112 (113)
T ss_pred             CccccHHHHhcCCceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence            0111256778888999999999999999999999999999998899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=99.56  E-value=5.3e-14  Score=100.65  Aligned_cols=100  Identities=32%  Similarity=0.493  Sum_probs=89.0

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCeeEEEcC---CCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHH
Q 026712           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDD---DWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRL  160 (234)
Q Consensus        84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~---~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (234)
                      ....+.+++++.++.+.+.+.+...+||+|+   +|+++|+|+.+|+.+..                             
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~-----------------------------   53 (105)
T cd04591           3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVAL-----------------------------   53 (105)
T ss_pred             ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHH-----------------------------
Confidence            4678899999999999999988888999998   68999999999998641                             


Q ss_pred             HhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHH
Q 026712          161 LSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRA  222 (234)
Q Consensus       161 ~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~  222 (234)
                          ..     +|.+++.++++++++.++++.|.+++.+.+||++ +|+++|+||+.|++++
T Consensus        54 ----~~-----~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~~  105 (105)
T cd04591          54 ----KN-----YIDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLKA  105 (105)
T ss_pred             ----HH-----hccCCCceECCCCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhcC
Confidence                00     7778899999999999999999999999999996 7899999999999863

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=99.56  E-value=4.6e-14  Score=126.46  Aligned_cols=117  Identities=26%  Similarity=0.387  Sum_probs=103.4

Q ss_pred             ccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCC---CcEEEEEehHHHhhhhccCCCCCCCCCCCCCccch
Q 026712           74 TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDD---WKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNST  150 (234)
Q Consensus        74 ~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~---~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~  150 (234)
                      ..++.|..  ++.++++++++.++.++|.+.+++.+||+|++   ++++|+|+.+|+...                    
T Consensus        97 ~~e~g~i~--dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~--------------------  154 (495)
T PTZ00314         97 RFENGFIM--DPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFV--------------------  154 (495)
T ss_pred             cccccccc--CCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhc--------------------
Confidence            35567776  78999999999999999999999999999874   799999999999632                    


Q ss_pred             hhhhHHHHHHHhhcCCCcccccccC--CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHH
Q 026712          151 WKTFNELQRLLSKTNGKVVGDLMTP--APLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAAL  224 (234)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~  224 (234)
                                  .....++.++|++  +++++.+++++.+++++|.+++.+.+||+|++++++|+||++|+++...
T Consensus       155 ------------~~~~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~~  218 (495)
T PTZ00314        155 ------------KDKSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNRG  218 (495)
T ss_pred             ------------ccCCCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhccc
Confidence                        0234679999987  8999999999999999999999999999999999999999999998754

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=99.56  E-value=5.6e-14  Score=125.55  Aligned_cols=122  Identities=24%  Similarity=0.297  Sum_probs=102.7

Q ss_pred             cCccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccc
Q 026712           70 NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNS  149 (234)
Q Consensus        70 ~~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~  149 (234)
                      +...+++++|.+  ++.++.+++++.++++.|.+.+++.+||+|++++++|+|+.+|+.+.+....              
T Consensus       332 l~~~~v~~im~~--~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~--------------  395 (454)
T TIGR01137       332 LKNATVKDLHLP--APVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFAGK--------------  395 (454)
T ss_pred             hccCCHHHhCcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhccC--------------
Confidence            567889999988  8999999999999999999889999999998899999999999987532110              


Q ss_pred             hhhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHH
Q 026712          150 TWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAA  223 (234)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l  223 (234)
                                   .....++.++|.+++.++.+++++.++++.|.+++   .+||+++|+++|+||+.|+++.+
T Consensus       396 -------------~~~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~---~~vV~~~g~liGvvt~~dll~~l  453 (454)
T TIGR01137       396 -------------ANPDDAVSKVMSKKFIQIGEGEKLSDLSKFLEKNS---SAIVTEEGKPIGVVTKIDLLSFL  453 (454)
T ss_pred             -------------CCcCCCHHHhcCCCCeEECCcCcHHHHHHHHHHCC---eeEEEECCEEEEEEEHHHHHHhh
Confidence                         01235788999988999999999999999998764   34454479999999999999875

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.56  E-value=1.7e-13  Score=103.42  Aligned_cols=136  Identities=33%  Similarity=0.539  Sum_probs=98.9

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCC--CC---CCCCCccchhhhhHHHH
Q 026712           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQN--DT---SLFPNVNSTWKTFNELQ  158 (234)
Q Consensus        84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~  158 (234)
                      ++.++++++++.++.+.|.+.+++.+||+|+ ++++|+++..|+.+.+........  ..   ..+..........++..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (143)
T cd04634           2 NPITCNADDTISDAARLLRENKISGAPVLDG-GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEETK   80 (143)
T ss_pred             CcEEecCCCCHHHHHHHHHHcCCCcceEeEC-CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHHHH
Confidence            5788999999999999999999999999997 999999999999876432211000  00   00000000000111111


Q ss_pred             HHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712          159 RLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR  221 (234)
Q Consensus       159 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~  221 (234)
                      .........++.++|..++.++..++++.+++..|.+.+.+.+||+++ |+++|+++..|+++
T Consensus        81 ~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~  142 (143)
T cd04634          81 RALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE  142 (143)
T ss_pred             HHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence            112222456788899889999999999999999999999999999996 99999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK11573 hypothetical protein; Provisional

Probab=99.55  E-value=7.6e-14  Score=122.71  Aligned_cols=130  Identities=16%  Similarity=0.147  Sum_probs=109.0

Q ss_pred             cCccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCC-CcEEEEEehHHHhhhhccCCCCCCCCCCCCCcc
Q 026712           70 NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDD-WKLVGVVSDYDLLALDSISGGNQNDTSLFPNVN  148 (234)
Q Consensus        70 ~~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~  148 (234)
                      ..+.+|+++|.|+.++.+++.++++.++.+.+.+++++++||++++ +.++|+|+.+|++..... ...           
T Consensus       184 l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~-~~~-----------  251 (413)
T PRK11573        184 LEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTE-KKE-----------  251 (413)
T ss_pred             cCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhc-cCc-----------
Confidence            4578999999999999999999999999999999999999999765 789999999999864210 000           


Q ss_pred             chhhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHhh
Q 026712          149 STWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIK  227 (234)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~~  227 (234)
                                     .....+.+++ +++.+|+++.++.++++.|.+++.+...|+|+.|...|+||.+||++.+....
T Consensus       252 ---------------~~~~~l~~~~-r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTleDilEeivGei  314 (413)
T PRK11573        252 ---------------FTKENMLRAA-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVGDF  314 (413)
T ss_pred             ---------------CCHHHHHhhc-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEeeHHHHHHHHhCCC
Confidence                           0112233444 46899999999999999999999999999999999999999999999998543

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.53  E-value=1.7e-13  Score=99.55  Aligned_cols=113  Identities=29%  Similarity=0.423  Sum_probs=92.0

Q ss_pred             CceeecCCCCHHHHHHHHHhCC-CCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHh
Q 026712           84 DLHAVKTTTTVDEALERLVEKR-ITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLS  162 (234)
Q Consensus        84 ~~~~v~~~~~v~~a~~~~~~~~-~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (234)
                      ++.++++++++.++.+.|...+ .+.+||+|+ |+++|+++..|+.+.......                        ..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~~l~~~~~~~~~------------------------~~   56 (119)
T cd04598           2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD-GRPVGLIMREALMELLSTPYG------------------------RA   56 (119)
T ss_pred             CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC-CeeEEEEEHHHHHHHHhchhh------------------------HH
Confidence            5678899999999999998776 889999998 999999999999864211000                        00


Q ss_pred             hcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCC---EEEEEcCCCcEEEEEehHHHHH
Q 026712          163 KTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYR---RLPVVDGYGKLVGLITRGNVVR  221 (234)
Q Consensus       163 ~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~---~vpVv~~~~~~vGiit~~dll~  221 (234)
                      .....++.++|..++..+.+++++.++++.|.+++..   ..+|++++|+++|+|+..|+++
T Consensus        57 ~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~  118 (119)
T cd04598          57 LYGKKPVSEVMDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR  118 (119)
T ss_pred             HHcCCcHHHhcCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence            1134578899999999999999999999999988864   3468887899999999999975

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=99.53  E-value=1.5e-13  Score=125.47  Aligned_cols=151  Identities=25%  Similarity=0.336  Sum_probs=114.9

Q ss_pred             ccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCC---------------
Q 026712           72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGG---------------  136 (234)
Q Consensus        72 ~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~---------------  136 (234)
                      ..+|+++|.+  ++.++++++++.+|+++|.++++..+||+|++|+++|+|+.+|+.+.......               
T Consensus        67 ~~~V~dim~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~Givt~~di~~~~~~~~~~~~~~~~~~t~~~i~  144 (546)
T PRK14869         67 KPQVRDLEID--KPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDLARAYMDILDPEILSKSPTSLENII  144 (546)
T ss_pred             CCcHHHhcCC--CCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhhcchhhhhhcCCCHHHHH
Confidence            3579999988  89999999999999999999999999999998999999999999875432110               


Q ss_pred             ----------C-CCC---CC--------------CCCC----ccchhh--------------------------------
Q 026712          137 ----------N-QND---TS--------------LFPN----VNSTWK--------------------------------  152 (234)
Q Consensus       137 ----------~-~~~---~~--------------~~~~----~~~~~~--------------------------------  152 (234)
                                . ...   +.              +..+    ++..+.                                
T Consensus       145 ~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~~~~ai~~~~~~lIlt~g~~~~~~v~~la~~~  224 (546)
T PRK14869        145 RTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDIQLAAIEAGVRLLIITGGAPVSEDVLELAKEN  224 (546)
T ss_pred             HhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHHhC
Confidence                      0 000   00              0000    000000                                


Q ss_pred             -------hhHHHHHHHhhcCCCccccccc-CCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHH
Q 026712          153 -------TFNELQRLLSKTNGKVVGDLMT-PAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAAL  224 (234)
Q Consensus       153 -------~~~~~~~~~~~~~~~~v~~im~-~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~  224 (234)
                             .++.+.....-....+|.++|+ ++++++++++++.++.+.|.+++.+.+||+|++|+++|+||..|+++...
T Consensus       225 ~i~ii~t~~dt~~t~~~l~~~~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~dl~~~~~  304 (546)
T PRK14869        225 GVTVISTPYDTFTTARLINQSIPVSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLSPVR  304 (546)
T ss_pred             CCeEEEecccHHHHHHHhhcCCCHHHhccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHHHhhcccc
Confidence                   0012333333345678999999 89999999999999999999999999999998999999999999998654

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=99.52  E-value=1e-13  Score=121.88  Aligned_cols=125  Identities=32%  Similarity=0.446  Sum_probs=113.8

Q ss_pred             cCccccccccccCCCceeecCCCCHHHHHHHHHhC-----CCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCC
Q 026712           70 NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEK-----RITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLF  144 (234)
Q Consensus        70 ~~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~-----~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~  144 (234)
                      ...-+++.+|+.  ++++++++.|+.+++..+++.     ...+++|+|.+++++|+++.++++..              
T Consensus       129 y~e~taG~~Mt~--e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll~a--------------  192 (451)
T COG2239         129 YPEDTAGRIMTT--EFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLLTA--------------  192 (451)
T ss_pred             CChhhhhcccee--eeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHhcC--------------
Confidence            456689999999  999999999999999999843     46789999999999999999999854              


Q ss_pred             CCccchhhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHH
Q 026712          145 PNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAAL  224 (234)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~  224 (234)
                                         .+..++.++|.+.++.+.+++..+++++.|.+++.-.+||||++++++|+||..|++..+.
T Consensus       193 -------------------~~~~~i~~im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi~  253 (451)
T COG2239         193 -------------------EPDELLKDLMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVIE  253 (451)
T ss_pred             -------------------CcHhHHHHHhcccceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHHH
Confidence                               4678899999999999999999999999999999999999999999999999999999988


Q ss_pred             Hhhhh
Q 026712          225 QIKRD  229 (234)
Q Consensus       225 ~~~~~  229 (234)
                      +...+
T Consensus       254 eEa~e  258 (451)
T COG2239         254 EEATE  258 (451)
T ss_pred             HHHHH
Confidence            76543

>COG0517 FOG: CBS domain [General function prediction only]

Probab=99.51  E-value=5.2e-13  Score=96.53  Aligned_cols=113  Identities=42%  Similarity=0.629  Sum_probs=96.3

Q ss_pred             cccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHH
Q 026712           77 DFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNE  156 (234)
Q Consensus        77 ~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (234)
                      ++|.+  ++.++.++.++.+|...|.++++..+||++. ++++|++|.+|+.+.......                    
T Consensus         3 ~~~~~--~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~-~~l~Giit~~di~~~~~~~~~--------------------   59 (117)
T COG0517           3 DIMTK--DVITVKPDTSVRDALLLMSENGVSAVPVVDD-GKLVGIITERDILRALAAGGK--------------------   59 (117)
T ss_pred             ccccC--CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhccCC--------------------
Confidence            34445  7899999999999999999999999999985 489999999999986422111                    


Q ss_pred             HHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHH-cCCCEEEEEcCCC-cEEEEEehHHHH
Q 026712          157 LQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLE-TKYRRLPVVDGYG-KLVGLITRGNVV  220 (234)
Q Consensus       157 ~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~-~~~~~vpVv~~~~-~~vGiit~~dll  220 (234)
                              ...++.++|..+++++.+++++.++++.|.+ ++.+.+||+++++ +++|++|..|++
T Consensus        60 --------~~~~v~~v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~  117 (117)
T COG0517          60 --------RLLPVKEVMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL  117 (117)
T ss_pred             --------ccccHHHhccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence                    1116889999889999999999999999999 7999999999875 999999999974

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=99.50  E-value=4.1e-13  Score=118.91  Aligned_cols=129  Identities=28%  Similarity=0.342  Sum_probs=109.1

Q ss_pred             cCccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEc-CCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCcc
Q 026712           70 NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVID-DDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVN  148 (234)
Q Consensus        70 ~~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd-~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~  148 (234)
                      ....+|+++|+|+.++.+++.+.+++++.+.+.+++++++||++ +.+.++|+++.+|++.......             
T Consensus       203 l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~-------------  269 (429)
T COG1253         203 LDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQ-------------  269 (429)
T ss_pred             cCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCc-------------
Confidence            45789999999999999999999999999999999999999999 4478999999999997632111             


Q ss_pred             chhhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHhhh
Q 026712          149 STWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIKR  228 (234)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~~~  228 (234)
                                       ..........+++++++..++.++++.|.+.+.|...|+|+.|.+.|+||..||++.+.....
T Consensus       270 -----------------~~~~~~~~~~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEeIvGei~  332 (429)
T COG1253         270 -----------------SDLDLRVLVRPPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEIVGEIP  332 (429)
T ss_pred             -----------------cccchhhcccCCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHHHhCCCc
Confidence                             001111112389999999999999999999999999999999999999999999999986443

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=99.36  E-value=1e-11  Score=92.83  Aligned_cols=109  Identities=22%  Similarity=0.205  Sum_probs=80.3

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK  163 (234)
Q Consensus        84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (234)
                      ++.++.+++++.+|++.|.+.+.+.+||+|++|+++|+|+.+|+.+..........  ...              .....
T Consensus         2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~~~~~~~--~~~--------------~~~~~   65 (133)
T cd04592           2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFTNKTTRV--QPE--------------DETKQ   65 (133)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhhcccccc--ccc--------------hhhcc
Confidence            57899999999999999998999999999998999999999999986432111000  000              00000


Q ss_pred             cCCCcccccc---------cCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCC
Q 026712          164 TNGKVVGDLM---------TPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYG  208 (234)
Q Consensus       164 ~~~~~v~~im---------~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~  208 (234)
                      .....+.++|         ..+++++.+++++.+|++.|.+++++.+||+++++
T Consensus        66 ~~~~~v~~i~~~~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~~  119 (133)
T cd04592          66 TNTCLVSSVCTKGISYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRGV  119 (133)
T ss_pred             cccccHHHHhhhhhhhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCCc
Confidence            0111223343         56789999999999999999999999999998543

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=99.36  E-value=4.5e-12  Score=106.61  Aligned_cols=129  Identities=25%  Similarity=0.345  Sum_probs=110.4

Q ss_pred             cCccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCC-CcEEEEEehHHHhhhhccCCCCCCCCCCCCCcc
Q 026712           70 NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDD-WKLVGVVSDYDLLALDSISGGNQNDTSLFPNVN  148 (234)
Q Consensus        70 ~~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~  148 (234)
                      .+.++|.|+|.++.++..++.+++.+++.+.+.++.+.++|++.++ +.++|+++.+|+++++....             
T Consensus       197 Le~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~-------------  263 (423)
T COG4536         197 LENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKN-------------  263 (423)
T ss_pred             cccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccC-------------
Confidence            4588999999998899999999999999999999999999999765 57999999999999753221             


Q ss_pred             chhhhhHHHHHHHhhcCCCcccccc--cCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHh
Q 026712          149 STWKTFNELQRLLSKTNGKVVGDLM--TPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQI  226 (234)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~v~~im--~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~  226 (234)
                                       +..-.+++  -.+|+++++.+++.+-+..|.+++-+.-.|||+.|.+.|+||.+||+++++..
T Consensus       264 -----------------~~~k~d~~~~a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLVTLEDIlEEIVGd  326 (423)
T COG4536         264 -----------------EFTKEDILRAADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLVTLEDILEEIVGD  326 (423)
T ss_pred             -----------------cccHhHHHHHhcCCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEeeeeHHHHHHHHhcc
Confidence                             11122222  25699999999999999999999999999999999999999999999999876


Q ss_pred             hh
Q 026712          227 KR  228 (234)
Q Consensus       227 ~~  228 (234)
                      ..
T Consensus       327 ft  328 (423)
T COG4536         327 FT  328 (423)
T ss_pred             cc
Confidence            55

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=99.26  E-value=7.2e-11  Score=102.59  Aligned_cols=126  Identities=27%  Similarity=0.371  Sum_probs=99.2

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK  163 (234)
Q Consensus        84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (234)
                      ++..+..+.++.+|++.|...+++.+||+|++|+.+|.++..|+...............          .   +....  
T Consensus       238 ~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~~~~~~~~~~~~----------~---l~~~~--  302 (381)
T KOG1764|consen  238 NIASISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHLAREGTYNNLDLS----------C---LSEAL--  302 (381)
T ss_pred             hheeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhhhhhcCccCccchh----------H---HHHHh--
Confidence            58899999999999999999999999999999999999999999876433322211100          0   00000  


Q ss_pred             cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHhhh
Q 026712          164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIKR  228 (234)
Q Consensus       164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~~~  228 (234)
                          .....-...++++.+++++.+++..|..+++|++.|||++|.++|+||..|++.++.....
T Consensus       303 ----~~~~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~~~p~  363 (381)
T KOG1764|consen  303 ----SHRPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLVLTPS  363 (381)
T ss_pred             ----hhcccccCccEEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHHhCcc
Confidence                1111112347999999999999999999999999999998999999999999999987643

>PF00571 CBS: CBS domain CBS domain web page

Probab=99.25  E-value=3e-11  Score=76.48  Aligned_cols=56  Identities=46%  Similarity=0.824  Sum_probs=53.0

Q ss_pred             ccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHH
Q 026712          169 VGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAAL  224 (234)
Q Consensus       169 v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~  224 (234)
                      |+++|.++++++++++++.++++.|.+++.+++||+|++|+++|+||.+|+++++.
T Consensus         1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l~   56 (57)
T PF00571_consen    1 VGDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKALL   56 (57)
T ss_dssp             HHHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHHH
T ss_pred             CeECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhhh
Confidence            46789999999999999999999999999999999999999999999999999875

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=99.15  E-value=7.4e-11  Score=104.87  Aligned_cols=168  Identities=21%  Similarity=0.224  Sum_probs=127.5

Q ss_pred             ccccccccccccCCCCcCccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCC-----CcEEEEEehHHHh
Q 026712           54 AFAHNGVGITNSVPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDD-----WKLVGVVSDYDLL  128 (234)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~-----~~~~Givt~~dl~  128 (234)
                      .+..+..++.+......++.+++|+|++  ++++++.-..+..+.++++...++.+||+|+.     +++.|+|-+..++
T Consensus       563 i~LkgvP~Le~~pe~~mr~L~a~ev~~~--pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~  640 (762)
T KOG0474|consen  563 IQLKGVPFLEWEPEPYMRNLTAGEVMSK--PVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLL  640 (762)
T ss_pred             hhccCCccccCCCchHhhhhhHhhhccC--CeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHH
Confidence            3445555666666666789999999999  99999999999999999999999999999863     4789999999887


Q ss_pred             hhhccCCCCCCCCCC-------CCCccchhhhhHHHHHHHhhc----CCCcccccccCCCeEecCCCCHHHHHHHHHHcC
Q 026712          129 ALDSISGGNQNDTSL-------FPNVNSTWKTFNELQRLLSKT----NGKVVGDLMTPAPLVVHENTNLEDAARLLLETK  197 (234)
Q Consensus       129 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~----~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~  197 (234)
                      ..+........+...       .....+.+++++.+++.....    --..+..+|++.|+++.+++++..+..+|.+-|
T Consensus       641 vlL~~~~f~~~~~~~~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lG  720 (762)
T KOG0474|consen  641 VLLKKRVFVEESRSTFDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLG  720 (762)
T ss_pred             HHHHhhhhhccCccccCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhc
Confidence            664433222221110       111123333444444444322    235688999999999999999999999999999


Q ss_pred             CCEEEEEcCCCcEEEEEehHHHHHHH
Q 026712          198 YRRLPVVDGYGKLVGLITRGNVVRAA  223 (234)
Q Consensus       198 ~~~vpVv~~~~~~vGiit~~dll~~l  223 (234)
                      .+++.||+..+..+|++|++|+..+=
T Consensus       721 LRhLlVv~~~~~~~gilTR~D~~~~~  746 (762)
T KOG0474|consen  721 LRHLLVVPKTNRVVGILTRKDLARYR  746 (762)
T ss_pred             ceeEEEecCCCceeEEEehhhhhhHH
Confidence            99999999888999999999999654

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=99.14  E-value=1.3e-10  Score=92.18  Aligned_cols=128  Identities=22%  Similarity=0.370  Sum_probs=109.0

Q ss_pred             CccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCC-CcEEEEEehHHHhhhhccCCCCCCCCCCCCCccc
Q 026712           71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDD-WKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNS  149 (234)
Q Consensus        71 ~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~  149 (234)
                      ....|+++|.++.+..++..+.++.+++..+.++.++++||+.++ +.+.|++..+||++.+..+.              
T Consensus        65 adl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~--------------  130 (293)
T COG4535          65 ADLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDA--------------  130 (293)
T ss_pred             HHhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCc--------------
Confidence            366899999998899999999999999999999999999999765 57999999999998632111              


Q ss_pred             hhhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHhhh
Q 026712          150 TWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIKR  228 (234)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~~~  228 (234)
                                     ....+.++. ++.++|+++-.+...++.|.....|...|+|+.|-+-|.||..|+++.++....
T Consensus       131 ---------------~~F~i~~lL-RPav~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEqIVGdIE  193 (293)
T COG4535         131 ---------------EPFDIKELL-RPAVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQIVGDIE  193 (293)
T ss_pred             ---------------ccccHHHhc-ccceecccchhHHHHHHHHHhhcCceEEEEeccCCeeeeEEHHHHHHHHhcccc
Confidence                           112345553 668999999999999999999999999999999999999999999999985543

>PF00571 CBS: CBS domain CBS domain web page

Probab=99.14  E-value=1.2e-10  Score=73.62  Aligned_cols=55  Identities=42%  Similarity=0.601  Sum_probs=51.7

Q ss_pred             cccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhh
Q 026712           75 VGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD  131 (234)
Q Consensus        75 v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~  131 (234)
                      |+++|.+  ++.++++++++.++.+.|.+++.+.+||+|++|+++|++|.+|+++++
T Consensus         1 v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l   55 (57)
T PF00571_consen    1 VGDIMTP--PPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKAL   55 (57)
T ss_dssp             HHHHSBS--SSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHH
T ss_pred             CeECCcC--CCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhh
Confidence            5789998  899999999999999999999999999999999999999999998763

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=99.09  E-value=2.6e-09  Score=92.53  Aligned_cols=109  Identities=27%  Similarity=0.379  Sum_probs=93.7

Q ss_pred             ceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhhc
Q 026712           85 LHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSKT  164 (234)
Q Consensus        85 ~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (234)
                      .....++.+..++.+.|...+...+.|+|+++++.|.++.+++.....                                
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--------------------------------  299 (363)
T TIGR01186       252 PITKTADKGPRSALQLMRDERVDSLYVVDRQNKLVGVVDVESIKQARK--------------------------------  299 (363)
T ss_pred             ceeecCCCCHHHHHHHHHhcCCceEEEEcCCCCEEEEEeHHHHHHHhh--------------------------------
Confidence            345566778999999999999999999999999999999999976421                                


Q ss_pred             CCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHh
Q 026712          165 NGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQI  226 (234)
Q Consensus       165 ~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~  226 (234)
                      ....+.+.+.....++.+++++.+++..|.+++.. +||+|++|+++|+|++.++++.+...
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~~~  360 (363)
T TIGR01186       300 KAQGLQDVLIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDALYDS  360 (363)
T ss_pred             cCCchhhhhccCCceECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHHHhh
Confidence            12346677777788999999999999999999998 99999999999999999999998764

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=99.07  E-value=2.8e-09  Score=93.49  Aligned_cols=121  Identities=24%  Similarity=0.257  Sum_probs=97.7

Q ss_pred             cccccccccCCC-ceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchh
Q 026712           73 YTVGDFMTKKED-LHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTW  151 (234)
Q Consensus        73 ~~v~~im~~~~~-~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~  151 (234)
                      .++.++|.+... .+...++.+..+++..|...+.+.++|+|+++++.|+++.+++.+...                   
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------------------  334 (400)
T PRK10070        274 FSAKDIARRTPNGLIRKTPGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLKTALT-------------------  334 (400)
T ss_pred             cchhhhhhcCcccccccCCCCCHHHHHHHHHhcCCceEEEEcCCCcEEEEEeHHHHHhhhh-------------------
Confidence            456677754101 123346678999999999999999999999999999999999976421                   


Q ss_pred             hhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHh
Q 026712          152 KTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQI  226 (234)
Q Consensus       152 ~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~  226 (234)
                                   ....+.+.+.....++.+++++.+++..+.++... +||||++|+++|+|+..++++.+.+.
T Consensus       335 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~~~  395 (400)
T PRK10070        335 -------------QQQGLDAALIDAPLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALDRE  395 (400)
T ss_pred             -------------cCCchhhhhccCCceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHHhc
Confidence                         12346666777788999999999999999987765 99999999999999999999998654

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=99.04  E-value=5.9e-10  Score=94.80  Aligned_cols=108  Identities=32%  Similarity=0.530  Sum_probs=96.9

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCeeEEEcC---CCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHH
Q 026712           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDD---DWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRL  160 (234)
Q Consensus        84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~---~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (234)
                      +++++.++.++.++++....+++..+||.+.   ..+++|+||.+|+-..                              
T Consensus       117 ~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~------------------------------  166 (503)
T KOG2550|consen  117 NPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFL------------------------------  166 (503)
T ss_pred             CCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhh------------------------------
Confidence            4588999999999999999999999999864   2589999999999642                              


Q ss_pred             HhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHH
Q 026712          161 LSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAA  223 (234)
Q Consensus       161 ~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l  223 (234)
                        +.....+.++|++++++.+...++.++-+++.+++...+||||++|+++.+|++.|+.+.-
T Consensus       167 --~~~~~~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~~  227 (503)
T KOG2550|consen  167 --EDNSLLVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKNR  227 (503)
T ss_pred             --hcccchhhhhcccccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhhhc
Confidence              2456789999999999999999999999999999999999999999999999999998753

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=98.79  E-value=4.9e-09  Score=75.88  Aligned_cols=55  Identities=27%  Similarity=0.425  Sum_probs=51.1

Q ss_pred             cccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712           73 YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (234)
Q Consensus        73 ~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  129 (234)
                      .+++++|.+  ++..+++++++.++++.|.+.+...+||+|++|+++|+|+.+|+.+
T Consensus        58 ~~v~dim~~--~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~  112 (113)
T cd04597          58 PRVRDVINR--KPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE  112 (113)
T ss_pred             hhHHHhcCC--CCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence            679999988  7899999999999999999999999999999899999999999864

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=98.77  E-value=2.7e-09  Score=95.23  Aligned_cols=115  Identities=13%  Similarity=0.250  Sum_probs=92.4

Q ss_pred             ccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchh
Q 026712           72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTW  151 (234)
Q Consensus        72 ~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~  151 (234)
                      ..+++++|.+  ++.++++++++.+|++.|.+++...+||+|++|+++|+||.+|+.+.+.                   
T Consensus       194 ~~~v~~im~~--~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~-------------------  252 (449)
T TIGR00400       194 EEILSSIMRS--SVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQ-------------------  252 (449)
T ss_pred             CCcHHHHhCC--CCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHH-------------------
Confidence            4579999998  7889999999999999999999999999999999999999999997631                   


Q ss_pred             hhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHh
Q 026712          152 KTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQI  226 (234)
Q Consensus       152 ~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~  226 (234)
                                    .....++|....++..+++.+.+++..|.+++..+++|.    .+.|+++ ..++..+.+.
T Consensus       253 --------------~~~~ed~~~~~gv~~~~~~~l~~~~~~~~~~R~~wL~v~----~~~~~~t-~~ii~~f~~~  308 (449)
T TIGR00400       253 --------------SEATEDFYMIAAVKPLDDSYFDTSILVMAKNRIIWLLVL----LVSSTFT-ATIISNYEDL  308 (449)
T ss_pred             --------------hhhHHHHHHhcCCCCCcchhhhchHHHHHHhccchHHHH----HHHHHHH-HHHHHHHHHH
Confidence                          122356666555555567788999999999999888876    4677777 6777665544

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=98.63  E-value=9.6e-08  Score=68.48  Aligned_cols=56  Identities=25%  Similarity=0.307  Sum_probs=51.6

Q ss_pred             ccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712           72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (234)
Q Consensus        72 ~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  129 (234)
                      ..++.++|..  ++.++.+++++.+|+++|.+++...+||+|++|+++|+||.+|+++
T Consensus        55 ~~~v~~~~~~--~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~~  110 (111)
T cd04603          55 TLKVCEVYIV--PVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTIYERELLR  110 (111)
T ss_pred             ccChhheeec--CCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence            4568999987  7889999999999999999999999999998899999999999975

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=98.62  E-value=2.2e-07  Score=83.84  Aligned_cols=117  Identities=30%  Similarity=0.403  Sum_probs=80.9

Q ss_pred             ccccccccc-cCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccch
Q 026712           72 TYTVGDFMT-KKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNST  150 (234)
Q Consensus        72 ~~~v~~im~-~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~  150 (234)
                      ..++.++|. .  +++++++++++.++++.|.+.+.+.+||+|++++++|+||.+|+++........             
T Consensus       146 ~~~V~dim~~~--~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~~p~a~-------------  210 (486)
T PRK05567        146 SQPVSEVMTKE--RLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEEFPNAC-------------  210 (486)
T ss_pred             CCcHHHHcCCC--CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhhCCCcc-------------
Confidence            457899998 4  789999999999999999999999999999999999999999998753110000             


Q ss_pred             hhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEehHHHHH
Q 026712          151 WKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDG-YGKLVGLITRGNVVR  221 (234)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~-~~~~vGiit~~dll~  221 (234)
                                ........+...|..     .+  .-.+.++.|.+.+++.+ ++|. +|+..|+++.-+.++
T Consensus       211 ----------~d~~g~l~V~aai~~-----~~--~~~e~a~~L~~agvdvi-vvD~a~g~~~~vl~~i~~i~  264 (486)
T PRK05567        211 ----------KDEQGRLRVGAAVGV-----GA--DNEERAEALVEAGVDVL-VVDTAHGHSEGVLDRVREIK  264 (486)
T ss_pred             ----------cccCCCEEEEeeccc-----Cc--chHHHHHHHHHhCCCEE-EEECCCCcchhHHHHHHHHH
Confidence                      000111223333332     22  12678888888999855 5553 577766555444443

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=98.61  E-value=1.5e-08  Score=92.64  Aligned_cols=144  Identities=22%  Similarity=0.291  Sum_probs=97.4

Q ss_pred             Cccccccccc-cCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccc
Q 026712           71 GTYTVGDFMT-KKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNS  149 (234)
Q Consensus        71 ~~~~v~~im~-~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~  149 (234)
                      ...+|+++|+ +  ++.++++++++.++.+.|.+.+...+||+|++|+++|+|+.+|+.+.....-... +.........
T Consensus       244 ~~~~V~~iM~~~--~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~dl~~~~~~~~iLV-D~~e~~q~~~  320 (546)
T PRK14869        244 QSIPVSYIMTTE--DLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLSPVRKKVILV-DHNEKSQAVE  320 (546)
T ss_pred             cCCCHHHhccCC--CcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHHHhhccccCceEEE-cCcccccccc
Confidence            4678999999 6  8999999999999999999999999999999999999999999987421100000 0000000000


Q ss_pred             hhhhhHHHHHHHhhcCCCcccccccCCCeEe---cCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHH
Q 026712          150 TWKTFNELQRLLSKTNGKVVGDLMTPAPLVV---HENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRA  222 (234)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v---~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~  222 (234)
                      +.+   . .....--...++.++++..++.+   +...+...+.+.|.+.++...|++. ...+.||++.++.+++
T Consensus       321 ~~~---~-~~i~~iiDHH~~~~~~~~~pi~~~~~~~gst~tiv~~~~~~~~i~~~~~ia-~~ll~gIlsDT~~f~~  391 (546)
T PRK14869        321 GIE---E-AEILEIIDHHRLGDIQTSNPIFFRNEPVGSTSTIVARMYRENGIEPSPEIA-GLLLAAILSDTLLFKS  391 (546)
T ss_pred             chh---h-ceEEEEecCCccCCCCCCCCcEEEeeeeeeHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHHhcCccC
Confidence            000   0 00000012335667777766554   4466677899999999998888876 4578888888877653

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=98.59  E-value=1.3e-07  Score=77.70  Aligned_cols=65  Identities=29%  Similarity=0.536  Sum_probs=59.9

Q ss_pred             HHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712          157 LQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR  221 (234)
Q Consensus       157 ~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~  221 (234)
                      .+.......+....++|+++++++..++++.+|.+.|.+++++.+||+|++.+++|+|+++|+++
T Consensus       235 lqa~~R~~~~LtcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~  299 (382)
T COG3448         235 LQALRRRMGELTCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLK  299 (382)
T ss_pred             HHHHHHHhccccHHHhcCccceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhh
Confidence            34555567788899999999999999999999999999999999999999999999999999998

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=98.58  E-value=1.2e-07  Score=76.53  Aligned_cols=62  Identities=32%  Similarity=0.466  Sum_probs=58.2

Q ss_pred             cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHh
Q 026712          164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQI  226 (234)
Q Consensus       164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~  226 (234)
                      -++.++.++|+++++++.+++++.+++..|.+++++..||+| +++++|++|.+|+.+.+.+.
T Consensus       169 iPk~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd-~dk~vGiit~~dI~~aia~g  230 (294)
T COG2524         169 IPKEKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVD-DDKIVGIITLSDIAKAIANG  230 (294)
T ss_pred             cCcchhhhhccCCceEecCCccHHHHHHHHHHcCccCCceec-CCceEEEEEHHHHHHHHHcC
Confidence            466789999999999999999999999999999999999999 56999999999999999875

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=98.56  E-value=5.4e-07  Score=81.20  Aligned_cols=110  Identities=21%  Similarity=0.169  Sum_probs=74.6

Q ss_pred             CceecCCCccCCCccccCc---ccccCcceeeccccc---cc--ccccccccccccCCCCcCccccccccccCCCceeec
Q 026712           18 NGVINSVPHLQLPITVATP---SHLSKRLRFFTVSRE---VK--AFAHNGVGITNSVPPRNGTYTVGDFMTKKEDLHAVK   89 (234)
Q Consensus        18 ~g~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~   89 (234)
                      +|++..|+.+.++.++...   ........++.....   ..  ......++...   ......+|+++|++..++++++
T Consensus       101 ~g~i~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~---~~~~~~~V~dIMt~~~~~itv~  177 (502)
T PRK07107        101 AGFVVSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRIS---RMSLDTKVKDFMTPFEKLVTAN  177 (502)
T ss_pred             cCCcCCCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhcc---ccCCCCCHHHHhCCCCCeEEEC
Confidence            4566677888888877222   122223333333321   11  12222222111   1234567999998534688999


Q ss_pred             CCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhh
Q 026712           90 TTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLAL  130 (234)
Q Consensus        90 ~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~  130 (234)
                      +++++.+|+++|.++++..+||+|++++++|+||.+|+++.
T Consensus       178 ~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~  218 (502)
T PRK07107        178 EGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSH  218 (502)
T ss_pred             CCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhc
Confidence            99999999999999999999999988999999999999975

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=98.52  E-value=9.3e-07  Score=79.24  Aligned_cols=57  Identities=33%  Similarity=0.425  Sum_probs=53.4

Q ss_pred             cccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhh
Q 026712           73 YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD  131 (234)
Q Consensus        73 ~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~  131 (234)
                      .++.++|.+  ++.++++++++.+|+++|.+++...+||+|++++++|+||.+||++..
T Consensus       148 ~~V~diMt~--~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~  204 (479)
T PRK07807        148 TQVRDVMST--DLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRAT  204 (479)
T ss_pred             CCHHHhccC--CceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHh
Confidence            469999998  899999999999999999999999999999889999999999999863

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.50  E-value=3.6e-07  Score=65.74  Aligned_cols=58  Identities=19%  Similarity=0.386  Sum_probs=52.7

Q ss_pred             cCccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712           70 NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (234)
Q Consensus        70 ~~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  129 (234)
                      +...++.++|..  ++.++.+++++.+|++.|.+++...+||+|++|+++|+|+.+|+.+
T Consensus        56 ~~~~~v~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~  113 (114)
T cd04619          56 GCTAPVENVMTR--AVVSCRPGDLLHDVWQVMKQRGLKNIPVVDENARPLGVLNARDALK  113 (114)
T ss_pred             cccCCHHHHhcC--CCeeECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence            345678999987  7899999999999999999999999999998899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=98.49  E-value=5.2e-07  Score=67.71  Aligned_cols=79  Identities=23%  Similarity=0.375  Sum_probs=64.1

Q ss_pred             cchhhhhHHHHHHHhhc--CCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHH
Q 026712          148 NSTWKTFNELQRLLSKT--NGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQ  225 (234)
Q Consensus       148 ~~~~~~~~~~~~~~~~~--~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~  225 (234)
                      +..+..++.+-..+...  ....+..+|+.+++.+.+++++.+++.+|.++|++.+||++ +|.++|-||-.+|.+.+.+
T Consensus        44 dPrlSt~k~Il~aL~e~e~~~ita~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~-~~k~VGsItE~~iv~~~le  122 (187)
T COG3620          44 DPRLSTVKRILEALEEAEKTRITAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIE-EDKVVGSITENDIVRALLE  122 (187)
T ss_pred             CccHHHHHHHHHHHHHhhcceEeHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceee-CCeeeeeecHHHHHHHHhc
Confidence            34444444444444433  33467899999999999999999999999999999999999 5999999999999999877


Q ss_pred             hh
Q 026712          226 IK  227 (234)
Q Consensus       226 ~~  227 (234)
                      ..
T Consensus       123 ~~  124 (187)
T COG3620         123 GM  124 (187)
T ss_pred             cc
Confidence            63

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=98.48  E-value=3.3e-07  Score=66.24  Aligned_cols=55  Identities=33%  Similarity=0.489  Sum_probs=51.2

Q ss_pred             CcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712          167 KVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR  221 (234)
Q Consensus       167 ~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~  221 (234)
                      .++.++|..++.++.+++++.++++.|.+.+.+.+||+|++|+++|+|+..||.+
T Consensus        58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~  112 (113)
T cd04597          58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE  112 (113)
T ss_pred             hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence            5689999989999999999999999999999999999998899999999999864

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=98.46  E-value=2.8e-06  Score=76.17  Aligned_cols=57  Identities=25%  Similarity=0.310  Sum_probs=53.5

Q ss_pred             cccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhh
Q 026712           73 YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD  131 (234)
Q Consensus        73 ~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~  131 (234)
                      .+++++|++  +++++++++++.+|+++|.+++...+||+|++++++|+||.+||++..
T Consensus       146 ~~V~dIMt~--~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~  202 (475)
T TIGR01303       146 TQVRDIMST--DLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRAT  202 (475)
T ss_pred             CCHHHHccC--CceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHH
Confidence            579999998  899999999999999999999999999999889999999999999863

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=98.44  E-value=6.7e-07  Score=77.95  Aligned_cols=122  Identities=24%  Similarity=0.304  Sum_probs=97.0

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCeeEEEc-CCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHh
Q 026712           84 DLHAVKTTTTVDEALERLVEKRITGFPVID-DDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLS  162 (234)
Q Consensus        84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd-~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (234)
                      .+..+.+..++.++...+.+.+++++||.| +.+.+.+++|.+.+++.+........-.                     
T Consensus       163 ~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~~~~~---------------------  221 (381)
T KOG1764|consen  163 PFVSISPESSLLDAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGRLLPLP---------------------  221 (381)
T ss_pred             CceeecCcHHHHHHHHHHHhCCccceeeecccccceeeehhHHHHHHHHHHhhcccccH---------------------
Confidence            448999999999999999999999999998 5579999999999998754443322100                     


Q ss_pred             hcCCCcccccc---cCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHh
Q 026712          163 KTNGKVVGDLM---TPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQI  226 (234)
Q Consensus       163 ~~~~~~v~~im---~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~  226 (234)
                      .....++.++-   ..++..+..++++.+|+++|...++..+|||+.+|..+|+++..|+.....+.
T Consensus       222 ~~l~~s~~dl~ig~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~~~~  288 (381)
T KOG1764|consen  222 SLLSKSLSDLGIGTWSNIASISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHLAREG  288 (381)
T ss_pred             HHhhCCHHHhCcchhhhheeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhhhhhcC
Confidence            01112222221   23688999999999999999999999999999999999999999999887654

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=98.43  E-value=2.5e-06  Score=76.95  Aligned_cols=59  Identities=34%  Similarity=0.430  Sum_probs=54.1

Q ss_pred             ccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhh
Q 026712           72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLAL  130 (234)
Q Consensus        72 ~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~  130 (234)
                      ..+++++|++..++++++++.++.+|.++|.+++...+||+|++++++|+||.+|+++.
T Consensus       158 ~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~  216 (495)
T PTZ00314        158 STPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKN  216 (495)
T ss_pred             CCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhc
Confidence            56799999864468899999999999999999999999999999999999999999976

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=98.43  E-value=3.3e-06  Score=72.36  Aligned_cols=115  Identities=24%  Similarity=0.176  Sum_probs=84.6

Q ss_pred             hhcccCceecCCCccCCCccccC---cccccCcceeecccccccccccccccccccCCC--CcCccccccccccCCCcee
Q 026712           13 ARLNANGVINSVPHLQLPITVAT---PSHLSKRLRFFTVSREVKAFAHNGVGITNSVPP--RNGTYTVGDFMTKKEDLHA   87 (234)
Q Consensus        13 ~~~~~~g~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~im~~~~~~~~   87 (234)
                      +..-++|++++|.+++|..++..   .+.+..|..+.. ............+...+...  ......+.++|.+  +.++
T Consensus       107 vK~~~~g~~~~p~v~sp~~tvg~v~~~k~~~gF~g~pv-Te~g~~~~KLvG~vtsrdi~f~~~~~~~~~~vmt~--~~~~  183 (503)
T KOG2550|consen  107 VKNYENGFINNPIVISPTTTVGEVKEAKEKHGFSGIPV-TEDGKRGSKLVGIITSRDIQFLEDNSLLVSDVMTK--NPVT  183 (503)
T ss_pred             HHHhhcccccCCcccCCcccchhhhhhccccccccccc-ccCCcccceeEEEEehhhhhhhhcccchhhhhccc--cccc
Confidence            44568999999999999999933   344555443322 22223333333333333333  3346679999998  6689


Q ss_pred             ecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhh
Q 026712           88 VKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLAL  130 (234)
Q Consensus        88 v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~  130 (234)
                      .+.+.+++++.+++.+++...+||||++|+++.+|++.||.+.
T Consensus       184 ~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~  226 (503)
T KOG2550|consen  184 GAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKN  226 (503)
T ss_pred             ccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhhh
Confidence            9999999999999999999999999999999999999999874

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=98.39  E-value=7.7e-07  Score=80.31  Aligned_cols=113  Identities=14%  Similarity=0.161  Sum_probs=78.4

Q ss_pred             cCceecCCCccCCCccccCcc---cccCcceeeccccc---cc--ccccccccccccCCCCcCccccccccccCCCceee
Q 026712           17 ANGVINSVPHLQLPITVATPS---HLSKRLRFFTVSRE---VK--AFAHNGVGITNSVPPRNGTYTVGDFMTKKEDLHAV   88 (234)
Q Consensus        17 ~~g~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v   88 (234)
                      ++|++.+|..+.++.++....   ....+..++.....   ..  ......++..    ..+...+|.++|++..+++++
T Consensus       103 ~~gmi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~----v~~~~~~V~eIMt~~~~lvtv  178 (505)
T PLN02274        103 RVGFVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDF----VNDRETKLSEVMTSDDDLVTA  178 (505)
T ss_pred             cccccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhh----ccccCCcHHHHhccCCCcEEE
Confidence            678888899998888882221   22233333333221   11  1111122211    113467899999972238899


Q ss_pred             cCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhcc
Q 026712           89 KTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSI  133 (234)
Q Consensus        89 ~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~  133 (234)
                      ++++++.+|+++|.+++...+||+|++++++|+||.+|+.+....
T Consensus       179 ~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~  223 (505)
T PLN02274        179 PAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGY  223 (505)
T ss_pred             CCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence            999999999999999999999999988999999999999987543

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=98.39  E-value=8.5e-07  Score=64.45  Aligned_cols=56  Identities=36%  Similarity=0.576  Sum_probs=51.6

Q ss_pred             ccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712           72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (234)
Q Consensus        72 ~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  129 (234)
                      ..+++++|.+  ++.++++++++.++++.|.+.+.+.+||+|++|+++|+|+..|+++
T Consensus        68 ~~~i~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~  123 (124)
T cd04600          68 PETVGDIMSP--PVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA  123 (124)
T ss_pred             cccHHHhccC--CCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence            4578899987  8899999999999999999999999999998899999999999975

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.36  E-value=1e-06  Score=63.15  Aligned_cols=56  Identities=23%  Similarity=0.455  Sum_probs=50.1

Q ss_pred             ccccccccccCCCceeecCC--CCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712           72 TYTVGDFMTKKEDLHAVKTT--TTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (234)
Q Consensus        72 ~~~v~~im~~~~~~~~v~~~--~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  129 (234)
                      ..++.++|.+  ++.++.++  +++.++++.|.+++...+||+|++|+++|+||.+|+++
T Consensus        57 ~~~i~~~~~~--~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~  114 (115)
T cd04620          57 DLPIGEVMTQ--PVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ  114 (115)
T ss_pred             ccCHHHhcCC--CcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence            3578899987  78888887  78999999999999999999998899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=98.36  E-value=1.3e-06  Score=62.58  Aligned_cols=56  Identities=25%  Similarity=0.453  Sum_probs=51.2

Q ss_pred             ccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712           72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (234)
Q Consensus        72 ~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  129 (234)
                      ..++.++|.+  .+.++.+++++.++++.|.+.+...+||++++|+++|+|+.+|++.
T Consensus        57 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~  112 (113)
T cd04607          57 DDPVSEVMNR--NPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDDLLS  112 (113)
T ss_pred             CCCHHHhhcC--CCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence            4568899987  7889999999999999999999999999998899999999999963

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=98.35  E-value=2.3e-06  Score=76.82  Aligned_cols=133  Identities=21%  Similarity=0.327  Sum_probs=92.7

Q ss_pred             CceeecCC-CCHHHHHHHHHhCCCCeeEEEc--CCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHH-H-
Q 026712           84 DLHAVKTT-TTVDEALERLVEKRITGFPVID--DDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNEL-Q-  158 (234)
Q Consensus        84 ~~~~v~~~-~~v~~a~~~~~~~~~~~~pVvd--~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-  158 (234)
                      ...+++.+ ++++|...+|.+..++.+||+=  +..+++|++.++|+...+... ...++.......     .|... . 
T Consensus       557 ~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~a-r~~q~~~~~~~~-----~f~~~~~~  630 (696)
T KOG0475|consen  557 CLIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNA-RKIQSFIVTTSI-----YFNDPSPS  630 (696)
T ss_pred             hheeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhh-ccccccceeccc-----ccCCCCcc
Confidence            35666665 8999999999999999888883  346899999999997553211 111111000000     00000 0 


Q ss_pred             HHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHH
Q 026712          159 RLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAA  223 (234)
Q Consensus       159 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l  223 (234)
                      ..........++++|+..|.++...++..-++++|.+-+...+.|.. +|++.|+||++|+++..
T Consensus       631 ~~~~~~~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~-~G~l~Giitkkd~l~~~  694 (696)
T KOG0475|consen  631 AVAGIPSRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVTK-NGILLGIITKKDCLRHT  694 (696)
T ss_pred             ccCCCCCCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEcc-CCeeEeeeehHHHHHhh
Confidence            00001223457889999999999999999999999999998887776 89999999999999864

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=98.35  E-value=1.1e-06  Score=75.12  Aligned_cols=58  Identities=28%  Similarity=0.379  Sum_probs=53.3

Q ss_pred             CccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhh
Q 026712           71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLAL  130 (234)
Q Consensus        71 ~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~  130 (234)
                      ...+++++|.+  ++.++.+++++.+|++.|.+++...+||+|++|+++|+||.+|+.++
T Consensus       261 ~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~  318 (321)
T PRK11543        261 LTTPVNEAMTR--GGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA  318 (321)
T ss_pred             cCCcHHHhcCC--CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence            34568999998  88999999999999999999999999999988999999999999864

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.33  E-value=1.6e-06  Score=63.06  Aligned_cols=51  Identities=22%  Similarity=0.295  Sum_probs=46.8

Q ss_pred             ccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHh
Q 026712           76 GDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL  128 (234)
Q Consensus        76 ~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~  128 (234)
                      .++|.+  ++.++++++++.+|++.|.+++.+.+||+|++++++|+||.+|+.
T Consensus        71 ~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~  121 (123)
T cd04627          71 LTIGTS--DVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVR  121 (123)
T ss_pred             cccCcC--CceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhh
Confidence            356776  789999999999999999999999999999889999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=98.32  E-value=1.5e-06  Score=61.64  Aligned_cols=56  Identities=32%  Similarity=0.475  Sum_probs=51.3

Q ss_pred             ccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712           72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (234)
Q Consensus        72 ~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  129 (234)
                      ..+++++|..  ++.++++++++.++.+.|.+.+...+||++++|+++|+++..|+.+
T Consensus        52 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~  107 (108)
T cd04596          52 DTTIEKVMTK--NPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK  107 (108)
T ss_pred             cccHHHHhcC--CCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence            4568899987  7899999999999999999999999999998899999999999974

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.31  E-value=1.4e-06  Score=63.03  Aligned_cols=59  Identities=20%  Similarity=0.441  Sum_probs=50.8

Q ss_pred             CccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCC---CcEEEEEehHHHhh
Q 026712           71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDD---WKLVGVVSDYDLLA  129 (234)
Q Consensus        71 ~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~---~~~~Givt~~dl~~  129 (234)
                      ...+++++|....++.++++++++.+++++|.+++...+||+|++   |+++|+||.+|+.+
T Consensus        56 ~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~  117 (118)
T cd04617          56 QKVPVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK  117 (118)
T ss_pred             cCCCHHHHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence            355688899732257899999999999999999999999999987   69999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.31  E-value=1.6e-06  Score=62.19  Aligned_cols=55  Identities=24%  Similarity=0.360  Sum_probs=50.4

Q ss_pred             ccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712           72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (234)
Q Consensus        72 ~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  129 (234)
                      ..++.++|..  ++.++++++++.++++.|.+.+...+||+|+ |+++|+|+..|+++
T Consensus        59 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~  113 (114)
T cd04630          59 RVNVYEIMTK--PLISVSPDMDIKYCARLMERTNIRRAPVVEN-NELIGIISLTDIFL  113 (114)
T ss_pred             ccCHHHHhcC--CCeeECCCCCHHHHHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence            4578899987  7899999999999999999999999999987 99999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.30  E-value=1.6e-06  Score=61.73  Aligned_cols=55  Identities=40%  Similarity=0.596  Sum_probs=49.9

Q ss_pred             ccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712           72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (234)
Q Consensus        72 ~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  129 (234)
                      ..++.++|.+  ++.++.+++++.+++..|.+++...+||+++ |+++|+||..|++.
T Consensus        56 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~~  110 (111)
T cd04626          56 EKKVFNIVSQ--DVFYVNEEDTIDEALDIMREKQIGRLPVVDD-NKLIGVVRTKDILD  110 (111)
T ss_pred             cCcHHHHhcC--CcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence            3468889987  7899999999999999999999999999997 89999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.30  E-value=2.1e-06  Score=61.16  Aligned_cols=57  Identities=33%  Similarity=0.399  Sum_probs=51.3

Q ss_pred             CccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712           71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (234)
Q Consensus        71 ~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  129 (234)
                      ...++.++|.+  ++.++.+++++.++++.|.+.+...+||++++|+++|+++.+|+++
T Consensus        55 ~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~  111 (112)
T cd04624          55 LDTPVSEIMTR--DLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVR  111 (112)
T ss_pred             CccCHHHhccC--CCEEECCCCcHHHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence            34578899987  7899999999999999999988899999998899999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.30  E-value=2.1e-06  Score=61.25  Aligned_cols=58  Identities=22%  Similarity=0.371  Sum_probs=52.1

Q ss_pred             cCccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712           70 NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (234)
Q Consensus        70 ~~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  129 (234)
                      +...++.++|.+  ++.++++++++.++++.|.+.+...+||+|++|+++|+++..|+.+
T Consensus        55 ~~~~~i~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~  112 (113)
T cd04615          55 LKDAKVREVMNS--PVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDILR  112 (113)
T ss_pred             hcCCcHHHhccC--CceEECCCCcHHHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence            345678899987  7899999999999999999999899999998899999999999964

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=98.29  E-value=1.5e-06  Score=62.33  Aligned_cols=58  Identities=28%  Similarity=0.430  Sum_probs=50.4

Q ss_pred             ccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712           72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (234)
Q Consensus        72 ~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  129 (234)
                      ..++.++|.+...+.++.+++++.+|++.|.+.+.+.+||+|++|+++|+++.+|+.+
T Consensus        56 ~~~v~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~  113 (114)
T cd04801          56 QTTVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR  113 (114)
T ss_pred             ccchhhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence            4568899975324678999999999999999999999999998889999999999864

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.29  E-value=1.7e-06  Score=60.82  Aligned_cols=45  Identities=20%  Similarity=0.296  Sum_probs=42.4

Q ss_pred             ceeecCCCCHHHHHHHHHhCCCCeeEEEcCC-CcEEEEEehHHHhh
Q 026712           85 LHAVKTTTTVDEALERLVEKRITGFPVIDDD-WKLVGVVSDYDLLA  129 (234)
Q Consensus        85 ~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~  129 (234)
                      +.++.+++++.+|+++|.+++...+||+|++ |+++|+|+.+|+++
T Consensus        52 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~   97 (98)
T cd04618          52 LVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK   97 (98)
T ss_pred             eEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence            6789999999999999999999999999987 89999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=98.28  E-value=2.3e-06  Score=60.86  Aligned_cols=57  Identities=23%  Similarity=0.446  Sum_probs=51.8

Q ss_pred             ccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhh
Q 026712           72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLAL  130 (234)
Q Consensus        72 ~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~  130 (234)
                      ..+++++|.+  ++.++.+++++.++++.|.+.+...+||+|++++++|+|+..|+++.
T Consensus        52 ~~~v~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~  108 (109)
T cd04606          52 DTPVSDIMDT--DVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVIDV  108 (109)
T ss_pred             cchHHHHhCC--CCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence            4568899987  78999999999999999999999999999988999999999999863

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=98.28  E-value=1.8e-06  Score=61.55  Aligned_cols=55  Identities=27%  Similarity=0.349  Sum_probs=50.5

Q ss_pred             cccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712           73 YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (234)
Q Consensus        73 ~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  129 (234)
                      .++.++|.+  ++.++++++++.++++.|.+.+...+||++++++++|+|+.+|++.
T Consensus        58 ~~v~~i~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~  112 (113)
T cd04587          58 TLVERVMTP--NPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH  112 (113)
T ss_pred             CCHHHhcCC--CCeEEcCCCCHHHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence            578899987  7889999999999999999999999999998899999999999964

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=98.28  E-value=3.6e-06  Score=49.90  Aligned_cols=47  Identities=47%  Similarity=0.736  Sum_probs=42.9

Q ss_pred             CeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHH
Q 026712          177 PLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAA  223 (234)
Q Consensus       177 ~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l  223 (234)
                      +.++.+++++.++++.|.+.+.+.+||++++++++|+++..++.+.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~~   48 (49)
T smart00116        2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKAL   48 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHhh
Confidence            56789999999999999999999999999878999999999998764

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.28  E-value=2.1e-06  Score=61.18  Aligned_cols=55  Identities=27%  Similarity=0.384  Sum_probs=49.8

Q ss_pred             ccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712           72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (234)
Q Consensus        72 ~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  129 (234)
                      ..++.++|..  ++.++.+++++.++++.|.+.+...+||++ +|+++|+||.+|+.+
T Consensus        57 ~~~v~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~-~~~~~Gvvt~~dl~~  111 (112)
T cd04625          57 DTTVRAIMNP--EPIVASPDDSIDEVRRLMVERHLRYLPVLD-GGTLLGVISFHDVAK  111 (112)
T ss_pred             cCCHHHHhCC--CCeEECCCCCHHHHHHHHHHcCCCeeeEEE-CCEEEEEEEHHHhhc
Confidence            4579999987  788999999999999999999999999998 589999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.28  E-value=3.6e-06  Score=60.94  Aligned_cols=49  Identities=31%  Similarity=0.431  Sum_probs=45.5

Q ss_pred             CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHH
Q 026712          176 APLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAAL  224 (234)
Q Consensus       176 ~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~  224 (234)
                      ++.++.+++++.++++.|.+++.+.+||+|++|+++|+++..|++..+.
T Consensus         2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~   50 (120)
T cd04641           2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAK   50 (120)
T ss_pred             CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHh
Confidence            5788999999999999999999999999998899999999999998654

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=98.26  E-value=3.3e-06  Score=59.56  Aligned_cols=54  Identities=20%  Similarity=0.330  Sum_probs=49.3

Q ss_pred             ccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712           74 TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (234)
Q Consensus        74 ~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  129 (234)
                      +++++|.+  ....+.+++++.++++.|.+.+...+||+|++++++|+|+.+++.+
T Consensus        52 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~  105 (106)
T cd04582          52 CCGDHAEP--FKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD  105 (106)
T ss_pred             chhhhccc--CCEEECCCCCHHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence            47888987  6788999999999999999999999999998899999999999974

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=98.26  E-value=2.8e-06  Score=59.97  Aligned_cols=55  Identities=27%  Similarity=0.501  Sum_probs=50.3

Q ss_pred             cccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712           73 YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (234)
Q Consensus        73 ~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  129 (234)
                      .+++++|.+  .+.++.+++++.++++.|.+++...+||++++|+++|+++..|+++
T Consensus        52 ~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~  106 (107)
T cd04610          52 ETVEEIMSK--DLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVIR  106 (107)
T ss_pred             ccHHHhCCC--CCeEECCCCCHHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence            468899987  7889999999999999999999899999998899999999999974

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=98.26  E-value=2.3e-05  Score=70.07  Aligned_cols=58  Identities=31%  Similarity=0.491  Sum_probs=53.4

Q ss_pred             ccccccccc-cCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhh
Q 026712           72 TYTVGDFMT-KKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD  131 (234)
Q Consensus        72 ~~~v~~im~-~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~  131 (234)
                      ..++.++|. +  ++.++++++++.++++.|.+++...+||+|++|+++|+||.+|+++..
T Consensus       142 ~~~V~dvm~~~--~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~  200 (450)
T TIGR01302       142 GKPVSEVMTRE--EVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRR  200 (450)
T ss_pred             CCCHHHhhCCC--CCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhcc
Confidence            557999998 4  689999999999999999999999999999999999999999999763

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=98.26  E-value=2.8e-06  Score=60.63  Aligned_cols=55  Identities=38%  Similarity=0.569  Sum_probs=50.8

Q ss_pred             cccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712           73 YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (234)
Q Consensus        73 ~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  129 (234)
                      .++.++|.+  ++.++++++++.++++.|...+...+||++++++++|+|+..|+++
T Consensus        59 ~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~  113 (114)
T cd04604          59 LPVADVMTR--NPKTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLLR  113 (114)
T ss_pred             CCHHHhhcc--CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence            469999988  7889999999999999999999999999998899999999999974

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=98.25  E-value=2.7e-06  Score=61.30  Aligned_cols=56  Identities=39%  Similarity=0.719  Sum_probs=51.2

Q ss_pred             ccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712           72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (234)
Q Consensus        72 ~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  129 (234)
                      ..++.++|.+  ++.++++++++.++++.|.+.+.+.+||++++|+++|+||..|+++
T Consensus        66 ~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~  121 (122)
T cd04585          66 KIKVSDIMTR--DPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR  121 (122)
T ss_pred             ccCHHHhccC--CCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence            3568899987  7899999999999999999999999999998899999999999975

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=98.25  E-value=2.8e-06  Score=60.13  Aligned_cols=55  Identities=25%  Similarity=0.482  Sum_probs=50.4

Q ss_pred             cccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712           73 YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (234)
Q Consensus        73 ~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  129 (234)
                      .++.++|.+  .+.++++++++.++.+.|.+.+...+||++++|+++|+++.+|+++
T Consensus        54 ~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~  108 (109)
T cd04583          54 KSLEDIMLE--DVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD  108 (109)
T ss_pred             CcHhHhhcC--CceEECCCCcHHHHHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence            468889987  7899999999999999999999999999998899999999999974

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=98.25  E-value=2.4e-06  Score=60.91  Aligned_cols=56  Identities=32%  Similarity=0.507  Sum_probs=51.3

Q ss_pred             ccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcC-CCcEEEEEehHHHhh
Q 026712           72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDD-DWKLVGVVSDYDLLA  129 (234)
Q Consensus        72 ~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~-~~~~~Givt~~dl~~  129 (234)
                      ..++.++|.+  ++.++++++++.++++.|.+.+...+||+++ +++++|+++.+|+..
T Consensus        57 ~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~  113 (114)
T cd04613          57 LVVASDIMTK--PPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS  113 (114)
T ss_pred             cEEHHHhccC--CCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence            3679999988  7899999999999999999999999999987 789999999999864

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=98.25  E-value=3.1e-06  Score=60.70  Aligned_cols=56  Identities=21%  Similarity=0.428  Sum_probs=50.6

Q ss_pred             ccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCC--CcEEEEEehHHHhh
Q 026712           72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDD--WKLVGVVSDYDLLA  129 (234)
Q Consensus        72 ~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~--~~~~Givt~~dl~~  129 (234)
                      ..++.++|.+  ++.++.+++++.++++.|.+++...+||+|++  |+++|+|+.+|+++
T Consensus        57 ~~~~~~~~~~--~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~  114 (115)
T cd04593          57 PSAVDEVATP--PLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL  114 (115)
T ss_pred             cccHHHhccC--CceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence            3458888987  78999999999999999999999999999987  79999999999975

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.24  E-value=2.8e-06  Score=61.80  Aligned_cols=56  Identities=39%  Similarity=0.695  Sum_probs=50.9

Q ss_pred             ccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712           72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (234)
Q Consensus        72 ~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  129 (234)
                      ..++.++|.+  ++.++++++++.++++.|.+.+...+||++++|+++|+||..|+.+
T Consensus        69 ~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~  124 (125)
T cd04631          69 NEPVRSIMTR--NVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK  124 (125)
T ss_pred             hcCHHHHhcC--CceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence            3468888987  7999999999999999999999999999998789999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=98.23  E-value=3.6e-06  Score=59.73  Aligned_cols=57  Identities=33%  Similarity=0.454  Sum_probs=51.6

Q ss_pred             CccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712           71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (234)
Q Consensus        71 ~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  129 (234)
                      ...+++++|.+  ++.++++++++.++++.|.+.+...+||+|++|+++|+|+.+|+.+
T Consensus        54 ~~~~v~~~~~~--~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~  110 (111)
T cd04611          54 LQTPVGEVMSS--PLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ  110 (111)
T ss_pred             CCcCHHHhcCC--CceEECCCCCHHHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence            35678999987  7899999999999999999999999999998899999999999974

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.23  E-value=3e-06  Score=61.36  Aligned_cols=56  Identities=29%  Similarity=0.484  Sum_probs=51.1

Q ss_pred             ccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712           72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (234)
Q Consensus        72 ~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  129 (234)
                      ..++.++|.+  ++.++++++++.++++.|.+.+.+.+||++++|+++|+++..|+++
T Consensus        66 ~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~  121 (122)
T cd04635          66 SPTVEKIMST--PVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK  121 (122)
T ss_pred             cCcHHHHhcC--CCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence            4568889987  7899999999999999999999999999998899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.23  E-value=3e-06  Score=60.30  Aligned_cols=55  Identities=25%  Similarity=0.383  Sum_probs=50.3

Q ss_pred             cccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712           73 YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (234)
Q Consensus        73 ~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  129 (234)
                      .++.++|..  ++.++++++++.++++.|.+++...+||++++|+++|+++.+|+.+
T Consensus        56 ~~v~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~  110 (111)
T cd04639          56 APVRGVMRR--DFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE  110 (111)
T ss_pred             CcHHHHhcC--CCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence            468899987  7899999999999999999999999999998799999999999964

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=98.22  E-value=3.6e-06  Score=59.81  Aligned_cols=56  Identities=39%  Similarity=0.612  Sum_probs=51.0

Q ss_pred             CccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712           71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (234)
Q Consensus        71 ~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  129 (234)
                      ...++.++|.+  ++.++.+++++.++++.|.+.+...+||++ +|+++|+||.+|+++
T Consensus        54 ~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~  109 (110)
T cd04595          54 GHAPVKDYMST--DVVTVPPDTPLSEVQELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR  109 (110)
T ss_pred             ccCcHHHHhcC--CCEEECCCCcHHHHHHHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence            45678999987  789999999999999999999999999999 789999999999974

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=98.22  E-value=6.5e-06  Score=61.30  Aligned_cols=51  Identities=29%  Similarity=0.371  Sum_probs=46.8

Q ss_pred             CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHh
Q 026712          176 APLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQI  226 (234)
Q Consensus       176 ~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~  226 (234)
                      ++.++.+++++.+|++.|.+.+.+.+||+|++|+++|+|+..|+++++...
T Consensus         2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~~   52 (133)
T cd04592           2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFTN   52 (133)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhhc
Confidence            578899999999999999999999999999889999999999999987643

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.22  E-value=4.1e-06  Score=60.62  Aligned_cols=57  Identities=35%  Similarity=0.550  Sum_probs=51.6

Q ss_pred             CccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712           71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (234)
Q Consensus        71 ~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  129 (234)
                      ...++.++|..  ++.++++++++.++++.|.+.+.+.+||++++|+++|+++..|+.+
T Consensus        65 ~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~  121 (122)
T cd04803          65 RDVPVAEVMKT--DVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR  121 (122)
T ss_pred             cCcCHHHhhCC--CCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence            35578899987  7899999999999999999999999999998889999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.20  E-value=4.6e-06  Score=59.28  Aligned_cols=55  Identities=38%  Similarity=0.573  Sum_probs=50.2

Q ss_pred             ccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712           72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (234)
Q Consensus        72 ~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  129 (234)
                      ..++.++|.+  ++.++++++++.++++.|.+.+...+||+++ |+++|+|+..|+.+
T Consensus        58 ~~~~~~~~~~--~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~  112 (113)
T cd04623          58 DTPVSEIMTR--NVITVTPDDTVDEAMALMTERRFRHLPVVDG-GKLVGIVSIGDVVK  112 (113)
T ss_pred             ccCHHHhcCC--CcEEECCCCcHHHHHHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence            4578999987  7899999999999999999999999999987 89999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.19  E-value=5.1e-06  Score=60.75  Aligned_cols=51  Identities=22%  Similarity=0.434  Sum_probs=46.4

Q ss_pred             cccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712           77 DFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (234)
Q Consensus        77 ~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  129 (234)
                      +.|.+  ++.++++++++.+|+++|.+++.+.+||+|++++++|+||..|+++
T Consensus        75 ~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~  125 (126)
T cd04642          75 GVKSR--PLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS  125 (126)
T ss_pred             ccccC--CCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence            45666  7899999999999999999999999999998899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=98.19  E-value=3.1e-06  Score=62.68  Aligned_cols=55  Identities=38%  Similarity=0.505  Sum_probs=50.5

Q ss_pred             ccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712           72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (234)
Q Consensus        72 ~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  129 (234)
                      ..++.++|.+  ++.++++++++.++++.|.+.+.+.+||+| +|+++|+||.+|+.+
T Consensus        80 ~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~  134 (135)
T cd04586          80 GRKVADVMTR--PVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLR  134 (135)
T ss_pred             CCCHHHHhCC--CceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence            4578899987  789999999999999999999999999999 799999999999875

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=98.19  E-value=3.9e-06  Score=60.20  Aligned_cols=55  Identities=31%  Similarity=0.378  Sum_probs=48.7

Q ss_pred             cccccccccCCCceeecC--CCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712           73 YTVGDFMTKKEDLHAVKT--TTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (234)
Q Consensus        73 ~~v~~im~~~~~~~~v~~--~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  129 (234)
                      .+++++|..  ...++..  ++++.++++.|.+++...+||++++|+++|+||.+|+.+
T Consensus        57 ~~v~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~  113 (114)
T cd04602          57 TPLSEVMTP--REVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK  113 (114)
T ss_pred             CCHHHhcCC--CceEEECCCCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence            458899987  5667755  999999999999999999999998899999999999864

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.19  E-value=3.7e-06  Score=60.00  Aligned_cols=55  Identities=31%  Similarity=0.495  Sum_probs=50.1

Q ss_pred             ccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712           72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (234)
Q Consensus        72 ~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  129 (234)
                      ..++.++|.+  ++.++++++++.++++.|.+.+...+||+|+ |+++|+||.+|+.+
T Consensus        59 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~  113 (114)
T cd04629          59 VATVRDIMTT--EVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR  113 (114)
T ss_pred             CccHHHHhcc--CceEECCCCcHHHHHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence            4578899987  7889999999999999999999889999997 89999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.19  E-value=2.5e-06  Score=62.48  Aligned_cols=58  Identities=22%  Similarity=0.320  Sum_probs=48.1

Q ss_pred             cCccccccccccCCCcee--e----cCCCCHHHHHHHHHhCCCCeeEEEcCC-CcEEEEEehHHHhh
Q 026712           70 NGTYTVGDFMTKKEDLHA--V----KTTTTVDEALERLVEKRITGFPVIDDD-WKLVGVVSDYDLLA  129 (234)
Q Consensus        70 ~~~~~v~~im~~~~~~~~--v----~~~~~v~~a~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~  129 (234)
                      +...+++++|.+  +...  +    .+++++.++++.|.+++.+.+||+|++ |+++|+||.+|+.+
T Consensus        61 ~~~~~v~~im~~--~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~  125 (126)
T cd04640          61 RSELTVADVMTP--KEDLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR  125 (126)
T ss_pred             chheEHHHhcCc--hhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence            345679999986  4333  2    368899999999999999999999987 79999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=98.18  E-value=5.1e-06  Score=58.96  Aligned_cols=55  Identities=25%  Similarity=0.421  Sum_probs=50.3

Q ss_pred             cccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712           73 YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (234)
Q Consensus        73 ~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  129 (234)
                      .++.++|..  ++.+++++.++.++++.|.+.+...+||++++|+++|+|+.+|+.+
T Consensus        55 ~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~  109 (110)
T cd04588          55 AKVKDVMTK--DVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILR  109 (110)
T ss_pred             cCHHHHhcC--CceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence            568889987  7899999999999999999999999999998899999999999974

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.17  E-value=5.1e-06  Score=59.18  Aligned_cols=54  Identities=44%  Similarity=0.622  Sum_probs=49.8

Q ss_pred             ccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712           74 TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (234)
Q Consensus        74 ~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  129 (234)
                      ++.++|..  ++.++.+++++.++++.|.+.+...+||++++|+++|+++..|+.+
T Consensus        59 ~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~  112 (113)
T cd04622          59 TVGDVMTR--GVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR  112 (113)
T ss_pred             CHHHhccC--CccEECCCCCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence            58899987  7899999999999999999999999999998899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=98.17  E-value=5e-06  Score=58.86  Aligned_cols=56  Identities=34%  Similarity=0.477  Sum_probs=48.8

Q ss_pred             ccccccccccCCCceeecC-CCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712           72 TYTVGDFMTKKEDLHAVKT-TTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (234)
Q Consensus        72 ~~~v~~im~~~~~~~~v~~-~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  129 (234)
                      ..++.++|..  .+..+.. ++++.++++.|.+.+...+||++++|+++|+|+.+|+++
T Consensus        53 ~~~v~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~  109 (110)
T cd04601          53 DKPVSEVMTP--ENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK  109 (110)
T ss_pred             CCCHHHhccc--CceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence            4578899976  5566666 999999999999999999999998899999999999974

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.16  E-value=6.2e-06  Score=61.40  Aligned_cols=55  Identities=29%  Similarity=0.535  Sum_probs=50.2

Q ss_pred             ccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712           72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (234)
Q Consensus        72 ~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  129 (234)
                      ..+++++|.+  ++..+.+++++.++++.|.+.+...+||+++ |+++|+|+..|+++
T Consensus        80 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~  134 (135)
T cd04621          80 PLVAEDIMTE--EIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR  134 (135)
T ss_pred             cccHHHhcCC--CCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence            4579999987  7889999999999999999999999999986 89999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.15  E-value=4.7e-06  Score=60.20  Aligned_cols=56  Identities=36%  Similarity=0.621  Sum_probs=50.7

Q ss_pred             CccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712           71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (234)
Q Consensus        71 ~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  129 (234)
                      ...++.++|..  ++.++++++++.++++.|.+.+...+||+|+ |+++|+++.+|+++
T Consensus        65 ~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~  120 (121)
T cd04633          65 RNLPVSDIMTR--PVITIEPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILR  120 (121)
T ss_pred             hccCHHHHccC--CceEECCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhc
Confidence            35578889987  7899999999999999999999999999997 89999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=98.14  E-value=6.8e-06  Score=58.45  Aligned_cols=56  Identities=29%  Similarity=0.334  Sum_probs=50.4

Q ss_pred             CccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712           71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (234)
Q Consensus        71 ~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  129 (234)
                      ...++.++|.+  ++.++++++++.++++.|.+++...+||+++ ++++|+|+..|+.+
T Consensus        55 ~~~~i~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~dl~~  110 (111)
T cd04589          55 SSTPVGEIATF--PLITVDPDDFLFNALLLMTRHRIHRVVVREG-GEVVGVLEQTDLLS  110 (111)
T ss_pred             CCCCHHHHhCC--CcEEECCCCcHHHHHHHHHHhCccEEEEeeC-CEEEEEEEhHHhhc
Confidence            35578899987  7899999999999999999999999999985 89999999999975

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=98.13  E-value=7e-06  Score=57.64  Aligned_cols=53  Identities=28%  Similarity=0.466  Sum_probs=49.0

Q ss_pred             cccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHh
Q 026712           73 YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL  128 (234)
Q Consensus        73 ~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~  128 (234)
                      .++.++|.+  ++.++++++++.++++.|.+.+...+||+++ |+++|++|.+|+.
T Consensus        51 ~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~  103 (105)
T cd04599          51 RLVADAMTR--EVVTISPEASLLEAKRLMEEKKIERLPVLRE-RKLVGIITKGTIA  103 (105)
T ss_pred             CCHHHHccC--CCEEECCCCCHHHHHHHHHHcCCCEeeEEEC-CEEEEEEEHHHhc
Confidence            458899987  7899999999999999999999999999997 9999999999986

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=98.13  E-value=7.9e-06  Score=57.95  Aligned_cols=55  Identities=44%  Similarity=0.668  Sum_probs=50.2

Q ss_pred             cccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712           73 YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (234)
Q Consensus        73 ~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  129 (234)
                      .++.++|.+  ++.++.+++++.++++.|.+.+...+||++++++++|+|+..|+.+
T Consensus        56 ~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~  110 (111)
T cd04612          56 VLVGDVMTR--DPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR  110 (111)
T ss_pred             cCHHHhccC--CCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence            467788987  8999999999999999999999999999998899999999999974

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=98.13  E-value=7.8e-06  Score=57.99  Aligned_cols=54  Identities=22%  Similarity=0.524  Sum_probs=49.5

Q ss_pred             ccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712           74 TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (234)
Q Consensus        74 ~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  129 (234)
                      ++.++|.+  ++.++.+++++.++++.|.+.+...+||++++|+++|+|+..|+.+
T Consensus        56 ~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~  109 (110)
T cd04605          56 SVEDIMTR--NVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDISK  109 (110)
T ss_pred             CHHHhcCC--CCeEECCCCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence            48888977  7899999999999999999999999999998899999999999964

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=98.12  E-value=7.3e-06  Score=58.25  Aligned_cols=55  Identities=40%  Similarity=0.517  Sum_probs=50.3

Q ss_pred             ccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712           72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (234)
Q Consensus        72 ~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  129 (234)
                      ..++.++|..  ++.++++++++.++++.|.+.+.+.+||+++ |+++|+++.+|+++
T Consensus        56 ~~~i~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~  110 (111)
T cd04800          56 DTPVSEVMTA--PPITIPPDATVFEALLLMLERGIHHLPVVDD-GRLVGVISATDLLR  110 (111)
T ss_pred             cCCHHHHhCC--CCeEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence            4578899987  7899999999999999999999999999987 89999999999974

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=98.12  E-value=7.5e-06  Score=57.74  Aligned_cols=53  Identities=30%  Similarity=0.485  Sum_probs=48.1

Q ss_pred             ccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712           74 TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (234)
Q Consensus        74 ~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  129 (234)
                      ++.++|.+  ...+++++.++.++++.|.+++...+||++ +|+++|++|.+|+.+
T Consensus        51 ~~~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~~~~iGvit~~dl~~  103 (104)
T cd04594          51 DVVDYIVR--GIPYVRLTSTAEEAWEVMMKNKTRWCPVVD-DGKFKGIVTLDSILD  103 (104)
T ss_pred             chhhhhhc--CCcEEcCCCCHHHHHHHHHHcCcceEEEEE-CCEEEEEEEHHHhhc
Confidence            57788887  788999999999999999999999999998 589999999999974

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.11  E-value=1.1e-05  Score=56.26  Aligned_cols=47  Identities=34%  Similarity=0.480  Sum_probs=43.4

Q ss_pred             CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHH
Q 026712          176 APLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRA  222 (234)
Q Consensus       176 ~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~  222 (234)
                      +++.+.+++++.++++.|.+.+...+||+|++|+++|+++..|+...
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~   48 (96)
T cd04614           2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAK   48 (96)
T ss_pred             CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcC
Confidence            57889999999999999999999999999988999999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.11  E-value=7.7e-06  Score=59.21  Aligned_cols=55  Identities=36%  Similarity=0.541  Sum_probs=50.5

Q ss_pred             cccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712           73 YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (234)
Q Consensus        73 ~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  129 (234)
                      .+++++|..  ++.++++++++.++++.|.+.+...+||++++++++|+++..|+++
T Consensus        67 ~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~  121 (122)
T cd04637          67 RRAHQIMTR--DPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLK  121 (122)
T ss_pred             hHHHHhhcC--CCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhh
Confidence            468899987  7899999999999999999999999999998899999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=98.11  E-value=2.1e-05  Score=57.62  Aligned_cols=52  Identities=33%  Similarity=0.545  Sum_probs=47.2

Q ss_pred             CCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHh
Q 026712          175 PAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQI  226 (234)
Q Consensus       175 ~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~  226 (234)
                      +++.++++++++.++++.|.+.+...+||+|++|+++|+++..|+++.+.+.
T Consensus         2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~   53 (124)
T cd04608           2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSG   53 (124)
T ss_pred             CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHh
Confidence            4688899999999999999999999999999889999999999999876653

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=98.10  E-value=1.4e-05  Score=47.33  Aligned_cols=46  Identities=39%  Similarity=0.626  Sum_probs=41.8

Q ss_pred             ceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhh
Q 026712           85 LHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLAL  130 (234)
Q Consensus        85 ~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~  130 (234)
                      +.++++++++.++.+.|.+.+.+.+||++++++++|+++..++.+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~   47 (49)
T smart00116        2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKA   47 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHh
Confidence            4678999999999999999999999999988899999999999764

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.10  E-value=9.9e-06  Score=57.65  Aligned_cols=56  Identities=30%  Similarity=0.592  Sum_probs=49.9

Q ss_pred             CccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712           71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (234)
Q Consensus        71 ~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  129 (234)
                      ...++.++|.+  ++.++.+++++.++++.|.+.+...+||++++ +++|+|+.+|+++
T Consensus        56 ~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~  111 (112)
T cd04802          56 REVPVGEVMST--PLITIDPNASLNEAAKLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM  111 (112)
T ss_pred             ccCCHHHhcCC--CcEEECCCCCHHHHHHHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence            34578899987  78899999999999999999999999999875 9999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=98.09  E-value=7.1e-06  Score=70.36  Aligned_cols=58  Identities=28%  Similarity=0.268  Sum_probs=52.7

Q ss_pred             cCccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhh
Q 026712           70 NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLAL  130 (234)
Q Consensus        70 ~~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~  130 (234)
                      +...+|+++|.+  ++.++.+++++.+|++.|.+++...+||++ +++++|+||..|+++.
T Consensus       266 ~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lvGiit~~dil~~  323 (326)
T PRK10892        266 LRQASIADVMTP--GGIRVRPGILAVDALNLMQSRHITSVLVAD-GDHLLGVLHMHDLLRA  323 (326)
T ss_pred             cccCCHHHhcCC--CCEEECCCCCHHHHHHHHHHCCCcEEEEee-CCEEEEEEEhHHhHhc
Confidence            445689999998  899999999999999999999999999997 5799999999999874

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=98.07  E-value=9.5e-06  Score=57.63  Aligned_cols=54  Identities=24%  Similarity=0.286  Sum_probs=47.6

Q ss_pred             cccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712           73 YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (234)
Q Consensus        73 ~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  129 (234)
                      .++.++|.   ++.++.+++++.++++.|.+++.+.+||++++|+++|+||.+|+.+
T Consensus        57 ~~~~~~~~---~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~  110 (111)
T cd04590          57 LDLRDLLR---PPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE  110 (111)
T ss_pred             CCHHHHhc---CCeecCCCCcHHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence            35666664   4788999999999999999999999999998899999999999974

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.05  E-value=1.2e-05  Score=59.30  Aligned_cols=53  Identities=36%  Similarity=0.588  Sum_probs=49.2

Q ss_pred             ccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712           74 TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (234)
Q Consensus        74 ~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  129 (234)
                      ++.++|.+  ++..+.+++++.++.+.|.+.+...+||+++ |+++|++|..|+++
T Consensus        79 ~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~  131 (132)
T cd04636          79 KVEEIMTK--KVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIR  131 (132)
T ss_pred             CHHHhccC--CceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhc
Confidence            78899987  7899999999999999999999999999998 99999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.05  E-value=1.9e-05  Score=56.42  Aligned_cols=50  Identities=26%  Similarity=0.387  Sum_probs=45.7

Q ss_pred             CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHH
Q 026712          176 APLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQ  225 (234)
Q Consensus       176 ~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~  225 (234)
                      +++++..++++.++++.|.+.+.+.+||+|++|+++|+++..|+++.+.+
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~   51 (116)
T cd04643           2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKG   51 (116)
T ss_pred             CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhhc
Confidence            47789999999999999999999999999988999999999999987753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=98.02  E-value=8.2e-06  Score=68.80  Aligned_cols=104  Identities=25%  Similarity=0.303  Sum_probs=75.4

Q ss_pred             CCccCCCcccc---CcccccCcceeecccccccccccccccccccCCCCcCccccccccccCCCceeecCCCCHHHHHHH
Q 026712           24 VPHLQLPITVA---TPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALER  100 (234)
Q Consensus        24 ~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~a~~~  100 (234)
                      +.+|..+.++.   .-..+....||........   ...-+..+...+..+..++..+|++  ++.++.+.+++..+.+.
T Consensus       200 ~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~k---vvGvVt~rDv~~~~~~t~ieKVMtk--np~tv~~~tsVAsvaq~  274 (432)
T COG4109         200 TSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMK---VVGVVTMRDVLDKKPSTTIEKVMTK--NPITVRAKTSVASVAQM  274 (432)
T ss_pred             ceeccccccHHHHHHHHHHcCCCccceecccce---EEEEEEehhhhcCCCCccHHHHhcc--CCeeecccchHHHHHHH
Confidence            45555666551   1123334455654443322   1112223344556678899999999  89999999999999999


Q ss_pred             HHhCCCCeeEEEcCCCcEEEEEehHHHhhhhc
Q 026712          101 LVEKRITGFPVIDDDWKLVGVVSDYDLLALDS  132 (234)
Q Consensus       101 ~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~  132 (234)
                      |...++..+||+|++.+++|+||++|+++.+.
T Consensus       275 MiwE~iem~PVv~~n~~llGiitR~dvlk~lq  306 (432)
T COG4109         275 MIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQ  306 (432)
T ss_pred             HHhccceeeeEEcCCceEEEEEEHHHHHHHHH
Confidence            99999999999999999999999999998754

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=98.01  E-value=1.5e-05  Score=57.45  Aligned_cols=56  Identities=39%  Similarity=0.567  Sum_probs=50.4

Q ss_pred             CccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712           71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (234)
Q Consensus        71 ~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  129 (234)
                      ...++.++|.+  ++.++++++++.++++.|.+.+...+||+++ |+++|+++.+|+++
T Consensus        65 ~~~~v~~~~~~--~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~  120 (121)
T cd04584          65 LKMPVKEIMTK--DVITVHPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR  120 (121)
T ss_pred             cCcCHHHHhhC--CCeEECCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence            34568899987  7899999999999999999999999999987 89999999999975

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.00  E-value=3.2e-05  Score=56.54  Aligned_cols=49  Identities=37%  Similarity=0.588  Sum_probs=44.7

Q ss_pred             CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHH
Q 026712          176 APLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAAL  224 (234)
Q Consensus       176 ~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~  224 (234)
                      ++..+.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+++.+.
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~~   50 (128)
T cd04632           2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVV   50 (128)
T ss_pred             CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHHh
Confidence            4677899999999999999999999999998899999999999997654

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG0517 FOG: CBS domain [General function prediction only]

Probab=97.95  E-value=2.4e-05  Score=56.00  Aligned_cols=53  Identities=45%  Similarity=0.692  Sum_probs=49.0

Q ss_pred             ccccccccCCCceeecCCCCHHHHHHHHHh-CCCCeeEEEcCCC-cEEEEEehHHHh
Q 026712           74 TVGDFMTKKEDLHAVKTTTTVDEALERLVE-KRITGFPVIDDDW-KLVGVVSDYDLL  128 (234)
Q Consensus        74 ~v~~im~~~~~~~~v~~~~~v~~a~~~~~~-~~~~~~pVvd~~~-~~~Givt~~dl~  128 (234)
                      ++.++|..  ++.++.++.++.++.+.|.+ .+...+||+++++ +++|++|..|+.
T Consensus        63 ~v~~v~~~--~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~  117 (117)
T COG0517          63 PVKEVMTK--PVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL  117 (117)
T ss_pred             cHHHhccC--CcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence            68999997  78999999999999999999 7999999999886 999999999973

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=97.94  E-value=1.5e-05  Score=71.13  Aligned_cols=76  Identities=24%  Similarity=0.282  Sum_probs=62.2

Q ss_pred             ccccccccccccCC-CCcCccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhc
Q 026712           54 AFAHNGVGITNSVP-PRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS  132 (234)
Q Consensus        54 ~~~~~~~~~~~~~~-~~~~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~  132 (234)
                      +.....++...... ......+|+++|+.  +++++..++-+.||.-.|.+.++.++||++ +|+++|+||..||++.+.
T Consensus       194 GIvT~~dl~~~v~~~g~~~~~~V~evmT~--p~~svd~~~~~feAml~m~r~~I~hl~V~e-~gq~~Gilt~~dIl~l~s  270 (610)
T COG2905         194 GIVTRKDLRSRVIADGRSKTQKVSEVMTS--PVISVDRGDFLFEAMLMMLRNRIKHLPVTE-DGQPLGILTLTDILRLFS  270 (610)
T ss_pred             ceeehHHHHHHHHhcCCCcccchhhhhcc--CceeecCcchHHHHHHHHHHhCCceeeeec-CCeeeEEeeHHHHHHhhC
Confidence            33444444444333 34567799999999  999999999999999999999999999987 699999999999998753

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=97.94  E-value=3.1e-05  Score=69.37  Aligned_cols=62  Identities=34%  Similarity=0.535  Sum_probs=56.5

Q ss_pred             cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHH
Q 026712          164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQ  225 (234)
Q Consensus       164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~  225 (234)
                      ....++.++|.+++.++.+++++.++++.|.+.+...+||+|++|+++|+|+..|+++.+.+
T Consensus       332 l~~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~  393 (454)
T TIGR01137       332 LKNATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFA  393 (454)
T ss_pred             hccCCHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhc
Confidence            45678999999999999999999999999999999999999988999999999999987654

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=97.93  E-value=2.8e-05  Score=55.13  Aligned_cols=49  Identities=20%  Similarity=0.407  Sum_probs=45.0

Q ss_pred             ccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712           78 FMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (234)
Q Consensus        78 im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  129 (234)
                      +|.+  ++.++++++++.++.+.|.+.+...+||++ +|+++|+|+.+|+.+
T Consensus        56 ~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~  104 (105)
T cd04591          56 YIDP--SPFTVSPRTSLEKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLK  104 (105)
T ss_pred             hccC--CCceECCCCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhc
Confidence            7877  788999999999999999999999999995 689999999999974

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=97.90  E-value=2.8e-05  Score=55.89  Aligned_cols=57  Identities=19%  Similarity=0.246  Sum_probs=48.6

Q ss_pred             CccccccccccCCCceeecCCCCHHHHHHHHHhCCC---CeeEEEcCCCcEEEEEehHHHhh
Q 026712           71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRI---TGFPVIDDDWKLVGVVSDYDLLA  129 (234)
Q Consensus        71 ~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~---~~~pVvd~~~~~~Givt~~dl~~  129 (234)
                      ...+++++|.+  ++..+++++++.++++.|.+.+.   ...||++++|+++|+|+..|+++
T Consensus        59 ~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~  118 (119)
T cd04598          59 GKKPVSEVMDP--DPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR  118 (119)
T ss_pred             cCCcHHHhcCC--CcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence            35579999987  78999999999999999988764   34568888899999999999974

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.89  E-value=2.9e-05  Score=65.12  Aligned_cols=115  Identities=26%  Similarity=0.292  Sum_probs=88.8

Q ss_pred             CcCccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCcc
Q 026712           69 RNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVN  148 (234)
Q Consensus        69 ~~~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~  148 (234)
                      .....++.++|.+.+....-.+...-..+.+.+.+.....+.+++.+++.+|+++..+....                  
T Consensus       270 ~~~VltA~~IM~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~------------------  331 (386)
T COG4175         270 RSRVLTAKDIMRRPDLLIRKTPGDGPRVALKLLRDEGREYGYAVDRGNKFVGVVSIDSLVKA------------------  331 (386)
T ss_pred             hhheeeHHHhhcccccccccccccccchhhhhhhhccchhhHHHhccCceeeEEeccchhcc------------------
Confidence            34566888999852122222333444578888888887788888877889999999888641                  


Q ss_pred             chhhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHH
Q 026712          149 STWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQ  225 (234)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~  225 (234)
                                             .+...+..+..++++.+.+....+.+. .++|+|++|+++|+|+...+++.+..
T Consensus       332 -----------------------~~~~~~~~v~~d~~~~~~~~~~~~~~~-p~aVvde~~r~vG~i~~~~vl~aL~~  384 (386)
T COG4175         332 -----------------------ALIDDVLTVDADTPLSEILARIRQAPC-PVAVVDEDGRYVGIISRGELLEALAR  384 (386)
T ss_pred             -----------------------cccccccccCccchHHHHHHHHhcCCC-ceeEEcCCCcEEEEecHHHHHHHHhc
Confidence                                   345668889999999999998887776 78999999999999999999998864

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=97.89  E-value=2.8e-05  Score=64.67  Aligned_cols=58  Identities=31%  Similarity=0.386  Sum_probs=53.2

Q ss_pred             CcccccccCC-CeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHH
Q 026712          167 KVVGDLMTPA-PLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAAL  224 (234)
Q Consensus       167 ~~v~~im~~~-~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~  224 (234)
                      .++.++|.++ ++++.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+.+.+.
T Consensus       155 ~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~  213 (268)
T TIGR00393       155 VKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALL  213 (268)
T ss_pred             hhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHh
Confidence            5788999888 999999999999999999999999999998899999999999998654

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=97.87  E-value=6.2e-05  Score=66.56  Aligned_cols=62  Identities=15%  Similarity=0.288  Sum_probs=55.3

Q ss_pred             hcCCCcccccccC--CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEehHHHHHHHH
Q 026712          163 KTNGKVVGDLMTP--APLVVHENTNLEDAARLLLETKYRRLPVVDGY-GKLVGLITRGNVVRAAL  224 (234)
Q Consensus       163 ~~~~~~v~~im~~--~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~-~~~vGiit~~dll~~l~  224 (234)
                      ...+.+++++|++  ++.+++.++++.++++.+.++++.++||.+++ ++++|+|+.+|++..+.
T Consensus       187 ~l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~  251 (408)
T TIGR03520       187 SFGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLN  251 (408)
T ss_pred             ccCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhc
Confidence            4567899999986  78999999999999999999999999999864 68999999999997643

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.86  E-value=4.1e-05  Score=53.68  Aligned_cols=53  Identities=43%  Similarity=0.729  Sum_probs=48.5

Q ss_pred             cccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712           75 VGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (234)
Q Consensus        75 v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  129 (234)
                      +.++|..  +...+++++++.++.+.|.+.+...+||+|++++++|+++.+|+.+
T Consensus        60 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~  112 (113)
T cd02205          60 VGDVMTR--DVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR  112 (113)
T ss_pred             HHHHhcC--CceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence            6678877  7889999999999999999999999999999899999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=97.86  E-value=6.8e-05  Score=63.34  Aligned_cols=61  Identities=18%  Similarity=0.407  Sum_probs=55.0

Q ss_pred             cCCCcccccccC--CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEehHHHHHHHH
Q 026712          164 TNGKVVGDLMTP--APLVVHENTNLEDAARLLLETKYRRLPVVDGY-GKLVGLITRGNVVRAAL  224 (234)
Q Consensus       164 ~~~~~v~~im~~--~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~-~~~vGiit~~dll~~l~  224 (234)
                      .....|.++|++  ++.+++.++++.++++.+.+++.+++||++++ ++++|+|+.+|++..+.
T Consensus        64 l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~  127 (292)
T PRK15094         64 IADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMR  127 (292)
T ss_pred             cCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhh
Confidence            567889999987  68999999999999999999999999999865 78999999999997653

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=97.84  E-value=7.8e-05  Score=65.22  Aligned_cols=112  Identities=21%  Similarity=0.238  Sum_probs=77.6

Q ss_pred             CcCccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCcc
Q 026712           69 RNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVN  148 (234)
Q Consensus        69 ~~~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~  148 (234)
                      .....+++++|.+   ...+...... .+++.   .+.+.++|+|+     |+++..+...+..                
T Consensus       270 ~~~~l~a~~~m~~---~~~~~~~~~~-~~~~~---~~~~~~~~~~~-----~~~~~~~~~~~~~----------------  321 (382)
T TIGR03415       270 PLNVLTARSLMRP---LTDLEHVDGG-WCVSD---RRDTWLFTIDK-----QVRRRDAKLPVQA----------------  321 (382)
T ss_pred             cccceeHHHHhcc---cccccccCcc-hhhhh---cccceeEeecc-----ceecccchHhHhh----------------
Confidence            3456678888965   2222222222 33333   67788889885     8888777654210                


Q ss_pred             chhhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHH
Q 026712          149 STWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQ  225 (234)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~  225 (234)
                                    ......+.+ +..+..++.+++++.+++..+.+.+. .++|+|+ |+++|+|++.++++.+.+
T Consensus       322 --------------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~-~~~~g~~~~~~~~~~~~~  381 (382)
T TIGR03415       322 --------------WAAEQEVES-LEAAPTVINPDTLMRDVLAARHRTGG-AILLVEN-GRIVGVIGDDNIYHALLG  381 (382)
T ss_pred             --------------cccccchhh-hcccCcccCCCCcHHHHHHHHhcCCC-CeEEeeC-CeEEEEEeHHHHHHHHhc
Confidence                          012234555 45668889999999999999988775 6899995 999999999999998763

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=97.82  E-value=4.1e-05  Score=70.69  Aligned_cols=61  Identities=26%  Similarity=0.419  Sum_probs=55.2

Q ss_pred             CCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHH
Q 026712          165 NGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQ  225 (234)
Q Consensus       165 ~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~  225 (234)
                      ...+++++|++++.++++++++.++++.|.+++.+.+||+|++|+++|+|+.+|+.+.+.+
T Consensus       445 ~~~~V~dim~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~  505 (574)
T PRK01862        445 RTTQMRELIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLD  505 (574)
T ss_pred             hhCcHHHHhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhc
Confidence            3467999999999999999999999999999999999999988999999999999986543

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=97.82  E-value=9.3e-05  Score=52.15  Aligned_cols=50  Identities=26%  Similarity=0.410  Sum_probs=45.1

Q ss_pred             CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHh
Q 026712          176 APLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQI  226 (234)
Q Consensus       176 ~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~  226 (234)
                      ++.++..++++.++++.|.+.+.+.+||+++ |+++|+++..|+.+.+.+.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~   51 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSIDESDLLDALIEG   51 (110)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCceeeEeeC-CeeEEEEeHHHHHHHHhcc
Confidence            4678999999999999999999999999996 9999999999999976543

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.79  E-value=6.5e-05  Score=56.29  Aligned_cols=55  Identities=31%  Similarity=0.597  Sum_probs=49.7

Q ss_pred             ccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712           72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (234)
Q Consensus        72 ~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  129 (234)
                      ..++.++|..  ++.++++++++.++++.|.+.+...+||+++ ++++|+++.+|++.
T Consensus        88 ~~~v~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~  142 (143)
T cd04634          88 KMKVRDIMTK--KVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE  142 (143)
T ss_pred             cCCHHHHcCC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence            4568889987  7899999999999999999999999999987 89999999999964

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.77  E-value=7.4e-05  Score=52.59  Aligned_cols=54  Identities=37%  Similarity=0.509  Sum_probs=47.8

Q ss_pred             cccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712           73 YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (234)
Q Consensus        73 ~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  129 (234)
                      .++.++|..  ++.++++++++.++++.|.+.+...+||+++ |+++|+++.+|+.+
T Consensus        52 ~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~G~it~~d~~~  105 (106)
T cd04638          52 EQLALLMTR--DPPTVSPDDDVKEAAKLMVENNIRRVPVVDD-GKLVGIVTVADIVR  105 (106)
T ss_pred             chHHHHhcC--CCceECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence            357788877  7889999999999999999999999999985 79999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=97.60  E-value=8.6e-05  Score=65.93  Aligned_cols=59  Identities=20%  Similarity=0.369  Sum_probs=54.8

Q ss_pred             CccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhh
Q 026712           71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD  131 (234)
Q Consensus        71 ~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~  131 (234)
                      +..+++++|.+  +++++.+++..+++.+++++++.-.+||||++++++|+||..|++..+
T Consensus       194 ~~~~i~~im~~--~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi  252 (451)
T COG2239         194 PDELLKDLMED--DVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVI  252 (451)
T ss_pred             cHhHHHHHhcc--cceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHH
Confidence            36689999998  789999999999999999999999999999999999999999998763

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=97.26  E-value=0.00071  Score=58.88  Aligned_cols=55  Identities=27%  Similarity=0.489  Sum_probs=49.5

Q ss_pred             ccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhh
Q 026712           74 TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD  131 (234)
Q Consensus        74 ~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~  131 (234)
                      .+.+.|.+  ...++.+++++.+++..|.+++.. +||+|++|+++|+|+..++++.+
T Consensus       303 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~  357 (363)
T TIGR01186       303 GLQDVLID--DIYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDAL  357 (363)
T ss_pred             chhhhhcc--CCceECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHH
Confidence            46677776  778999999999999999999988 99999999999999999998864

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=97.23  E-value=0.0048  Score=57.21  Aligned_cols=60  Identities=28%  Similarity=0.364  Sum_probs=51.7

Q ss_pred             CccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCC--CcEEEEEehHHHhhhhc
Q 026712           71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDD--WKLVGVVSDYDLLALDS  132 (234)
Q Consensus        71 ~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~--~~~~Givt~~dl~~~~~  132 (234)
                      +.+.|+++|.+  ++..+..+.|.+|..+.+....+..+|+||..  ..++|.|.++.+...+.
T Consensus       586 h~v~VE~iMV~--dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~  647 (931)
T KOG0476|consen  586 HTVKVEHIMVT--DVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQ  647 (931)
T ss_pred             eEEEeeeeccc--cceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHH
Confidence            47789999999  99999999999999999988778899999864  36899999998875543

>PRK11573 hypothetical protein; Provisional

Probab=97.19  E-value=0.0021  Score=56.93  Aligned_cols=62  Identities=15%  Similarity=0.200  Sum_probs=54.8

Q ss_pred             hcCCCcccccccC--CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEehHHHHHHHH
Q 026712          163 KTNGKVVGDLMTP--APLVVHENTNLEDAARLLLETKYRRLPVVDGY-GKLVGLITRGNVVRAAL  224 (234)
Q Consensus       163 ~~~~~~v~~im~~--~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~-~~~vGiit~~dll~~l~  224 (234)
                      ...+.++.++|++  ++..++.++++.++++.+.+++..++||.+++ ++++|++..+|++..+.
T Consensus       183 ~l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~  247 (413)
T PRK11573        183 DLEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMT  247 (413)
T ss_pred             ccCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhh
Confidence            4567899999974  67889999999999999999999999999754 78999999999997654

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=96.97  E-value=0.0037  Score=55.76  Aligned_cols=65  Identities=25%  Similarity=0.496  Sum_probs=57.6

Q ss_pred             hcCCCcccccccC--CCeEecCCCCHHHHHHHHHHcCCCEEEEEc-CCCcEEEEEehHHHHHHHHHhh
Q 026712          163 KTNGKVVGDLMTP--APLVVHENTNLEDAARLLLETKYRRLPVVD-GYGKLVGLITRGNVVRAALQIK  227 (234)
Q Consensus       163 ~~~~~~v~~im~~--~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~-~~~~~vGiit~~dll~~l~~~~  227 (234)
                      ...+.+++++|++  ++..++.++++.++.+.+.+++++++||.+ +.+.++|++..+|++..+....
T Consensus       202 ~l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~  269 (429)
T COG1253         202 DLDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQ  269 (429)
T ss_pred             ccCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCc
Confidence            3567899999974  678899999999999999999999999999 5579999999999999988764

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=96.87  E-value=0.0026  Score=56.11  Aligned_cols=56  Identities=25%  Similarity=0.320  Sum_probs=48.7

Q ss_pred             ccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhc
Q 026712           74 TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS  132 (234)
Q Consensus        74 ~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~  132 (234)
                      .+.+.+.+  ...++.+++++.+++..+..+... +||+|++|+++|+|+..++++.+.
T Consensus       338 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~  393 (400)
T PRK10070        338 GLDAALID--APLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALD  393 (400)
T ss_pred             chhhhhcc--CCceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHH
Confidence            46666766  678999999999999999987766 999999999999999999998753

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=95.87  E-value=0.015  Score=53.13  Aligned_cols=57  Identities=18%  Similarity=0.238  Sum_probs=51.8

Q ss_pred             ccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhh
Q 026712           72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLAL  130 (234)
Q Consensus        72 ~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~  130 (234)
                      .+....+|++  .++++++++++..+..+++.-+..++.|++..++.+|++|++|+.+.
T Consensus       689 yvDl~p~~n~--sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gilTR~D~~~~  745 (762)
T KOG0474|consen  689 YVDLHPFMNP--SPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGILTRKDLARY  745 (762)
T ss_pred             ccccccccCC--CCcccCcccchHHHHHHHHHhcceeEEEecCCCceeEEEehhhhhhH
Confidence            4457788998  88999999999999999999999999999988889999999999854

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=95.26  E-value=0.037  Score=47.70  Aligned_cols=59  Identities=19%  Similarity=0.200  Sum_probs=49.2

Q ss_pred             cccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhh
Q 026712           73 YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD  131 (234)
Q Consensus        73 ~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~  131 (234)
                      .+-.+++.-..++..+++++++.+-+..|.+.+.+...||||-|.+.|+||.+|++...
T Consensus       265 ~~k~d~~~~a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLVTLEDIlEEI  323 (423)
T COG4536         265 FTKEDILRAADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLVTLEDILEEI  323 (423)
T ss_pred             ccHhHHHHHhcCCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEeeeeHHHHHHHH
Confidence            33445554333688999999999999999998888889999999999999999999763

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=95.13  E-value=0.039  Score=44.63  Aligned_cols=56  Identities=21%  Similarity=0.272  Sum_probs=50.1

Q ss_pred             ccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhh
Q 026712           72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLAL  130 (234)
Q Consensus        72 ~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~  130 (234)
                      ...+.++.++   .+.+++...+.-.++-|+..+.+.+.|+|+-|-+-|+||.+|++..
T Consensus       132 ~F~i~~lLRP---av~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEq  187 (293)
T COG4535         132 PFDIKELLRP---AVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQ  187 (293)
T ss_pred             cccHHHhccc---ceecccchhHHHHHHHHHhhcCceEEEEeccCCeeeeEEHHHHHHH
Confidence            4567787776   7899999999999999999999999999999999999999999875

>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]

Probab=94.31  E-value=0.09  Score=47.74  Aligned_cols=126  Identities=21%  Similarity=0.189  Sum_probs=90.5

Q ss_pred             cCccccccccccCCCceeecCCCCHH-HHHHHHHhCCCCeeEEEcCCC-cEEEEEehHHHhhhhccCCCCCCCCCCCCCc
Q 026712           70 NGTYTVGDFMTKKEDLHAVKTTTTVD-EALERLVEKRITGFPVIDDDW-KLVGVVSDYDLLALDSISGGNQNDTSLFPNV  147 (234)
Q Consensus        70 ~~~~~v~~im~~~~~~~~v~~~~~v~-~a~~~~~~~~~~~~pVvd~~~-~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~  147 (234)
                      .....++++|.+-+++..++.+..+. +......+.+++.+||.+.+. ..+|.+=...+.+.....             
T Consensus       201 l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~~~~~~~-------------  267 (498)
T KOG2118|consen  201 LTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLLRLLQVE-------------  267 (498)
T ss_pred             HHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhhhhhccc-------------
Confidence            34667899999987888888888777 444555688999999998653 233432222222221000             


Q ss_pred             cchhhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHH
Q 026712          148 NSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAAL  224 (234)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~  224 (234)
                                    ......++...+......++.++++.+.++.|.+...|...|.+ ..--+|+++..|+ +...
T Consensus       268 --------------~~~~~~~v~~~~~~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~-~~~~~~~~~l~~~-~~~~  328 (498)
T KOG2118|consen  268 --------------VPLEPLPVSESALLRLPLVPENMPLLDLLNEFQKGKSHMAVVRN-GHVDIFVLTLEDL-EEVV  328 (498)
T ss_pred             --------------cccccccchhhhccccccCCCcccHHHHHHHHhhhhceeEEEec-CCcceeeEeccch-hhhc
Confidence                          01344678888888899999999999999999988887777777 5668899999998 6655

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=94.13  E-value=0.12  Score=45.44  Aligned_cols=53  Identities=13%  Similarity=0.218  Sum_probs=43.7

Q ss_pred             ccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhh
Q 026712           74 TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD  131 (234)
Q Consensus        74 ~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~  131 (234)
                      ++.+ +..  +..++++++++.+++..+.+.+.. ++|+|+ |+++|+|+..+++..+
T Consensus       327 ~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~-~~~~g~~~~~~~~~~~  379 (382)
T TIGR03415       327 EVES-LEA--APTVINPDTLMRDVLAARHRTGGA-ILLVEN-GRIVGVIGDDNIYHAL  379 (382)
T ss_pred             chhh-hcc--cCcccCCCCcHHHHHHHHhcCCCC-eEEeeC-CeEEEEEeHHHHHHHH
Confidence            4555 444  678899999999999998887754 788886 9999999999998764

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=92.44  E-value=0.26  Score=40.77  Aligned_cols=40  Identities=30%  Similarity=0.374  Sum_probs=34.3

Q ss_pred             CCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHH
Q 026712          183 NTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRA  222 (234)
Q Consensus       183 ~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~  222 (234)
                      .....+++..+...+...+||+|++|+++|.|+..+++..
T Consensus       269 ~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~~  308 (309)
T COG1125         269 GFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLDE  308 (309)
T ss_pred             chhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhhh
Confidence            3344568888888999999999999999999999999864

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=92.37  E-value=0.37  Score=44.36  Aligned_cols=58  Identities=14%  Similarity=0.222  Sum_probs=50.1

Q ss_pred             cCccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhh
Q 026712           70 NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLAL  130 (234)
Q Consensus        70 ~~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~  130 (234)
                      ......+++|..  .+.++....+.+.+++++++-+...+.| +++|++.|+||.+|+++.
T Consensus       636 ~~~~~lk~il~~--tp~tv~d~tp~~~v~~~F~~lg~~~~~v-~~~G~l~Giitkkd~l~~  693 (696)
T KOG0475|consen  636 PSRLDLKDILDM--TPFTVTDLTPMETVVDLFRKLGLRQILV-TKNGILLGIITKKDCLRH  693 (696)
T ss_pred             CCCcCceeeccC--CcccccccCcHHHHHHHHHhhCceEEEE-ccCCeeEeeeehHHHHHh
Confidence            345567889887  7889999999999999999999988855 668999999999999875

>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=91.52  E-value=0.28  Score=46.10  Aligned_cols=61  Identities=18%  Similarity=0.232  Sum_probs=53.8

Q ss_pred             cccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCC--CcEEEEEehHHHHHHHHHhhh
Q 026712          168 VVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGY--GKLVGLITRGNVVRAALQIKR  228 (234)
Q Consensus       168 ~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~--~~~vGiit~~dll~~l~~~~~  228 (234)
                      .|.++|.+++..+..+++..|+-+.+.....+.+|+|++.  ..++|.|.++.+...+..+.-
T Consensus       589 ~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~~ig  651 (931)
T KOG0476|consen  589 KVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQRHIG  651 (931)
T ss_pred             EeeeeccccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHhhcC
Confidence            5899999999999999999999998887779999999853  469999999999999887543

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=91.32  E-value=0.49  Score=40.35  Aligned_cols=47  Identities=30%  Similarity=0.440  Sum_probs=40.9

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhh
Q 026712           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD  131 (234)
Q Consensus        84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~  131 (234)
                      .+..+..++++.+.+....+... .++|+|++++++|+++...++.++
T Consensus       336 ~~~~v~~d~~~~~~~~~~~~~~~-p~aVvde~~r~vG~i~~~~vl~aL  382 (386)
T COG4175         336 DVLTVDADTPLSEILARIRQAPC-PVAVVDEDGRYVGIISRGELLEAL  382 (386)
T ss_pred             cccccCccchHHHHHHHHhcCCC-ceeEEcCCCcEEEEecHHHHHHHH
Confidence            57888999999999998888765 478999999999999999998764

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=91.23  E-value=0.48  Score=39.26  Aligned_cols=59  Identities=25%  Similarity=0.366  Sum_probs=42.3

Q ss_pred             CccccccccccCC--CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712           71 GTYTVGDFMTKKE--DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (234)
Q Consensus        71 ~~~~v~~im~~~~--~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~  129 (234)
                      ...++.+.|.+..  +--.+.....-.+++..+...+...+||+|++|+++|.||..++..
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~  307 (309)
T COG1125         247 SLVSVADAVRRGEPADGEPLLEGFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLD  307 (309)
T ss_pred             chhhHHHhhcccccccCCccccchhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhh
Confidence            3455666665410  1123344555566787888888899999999999999999999975

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	234
4gqv_A	166	Crystal Structure Of Cbs-pair Protein, Cbsx1 From A		7e-74
3sl7_A	180	Crystal Structure Of Cbs-Pair Protein, Cbsx2 From A		9e-68
4gqw_A	152	Crystal Structure Of Cbs-pair Protein, Cbsx1 (loop		1e-65
2cu0_A	486	Crystal Structure Of Inosine-5'-Monophosphate Dehyd		1e-09
2yzq_A	282	Crystal Structure Of Uncharacterized Conserved Prot		5e-08
3kpb_A	122	Crystal Structure Of The Cbs Domain Pair Of Protein		1e-07
3kpc_A	124	Crystal Structure Of The Cbs Domain Pair Of Protein		1e-07
3kh5_A	280	Crystal Structure Of Protein Mj1225 From Methanocal		4e-07
1o50_A	157	Crystal Structure Of A Cbs Domain-Containing Protei		1e-06
1vrd_A	494	Crystal Structure Of Inosine-5'-Monophosphate Dehyd		2e-06
2p9m_A	138	Crystal Structure Of Conserved Hypothetical Protein		4e-06
2qlv_C	315	Crystal Structure Of The Heterotrimer Core Of The S		7e-06
3t4n_C	323	Structure Of The Regulatory Fragment Of Saccharomyc		8e-06
2nyc_A	144	Crystal Structure Of The Bateman2 Domain Of Yeast S		9e-06
2nye_A	144	Crystal Structure Of The Bateman2 Domain Of Yeast S		4e-05
2v8q_E	330	Crystal Structure Of The Regulatory Fragment Of Mam		3e-04
2yvy_A	278	Crystal Structure Of Magnesium Transporter Mgte Cyt		3e-04
2yvx_A	473	Crystal Structure Of Magnesium Transporter Mgte Len		6e-04
4fry_A	157	The Structure Of A Putative Signal-Transduction Pro		6e-04
1zfj_A	491	Inosine Monophosphate Dehydrogenase (Impdh; Ec 1.1.		9e-04

>pdb|4GQV|A Chain A, Crystal Structure Of Cbs-pair Protein, Cbsx1 From Arabidopsis Thaliana Length = 166

Iteration: 1
 Score =  273 bits (697), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 132/164 (80%), Positives = 148/164 (90%)
Query: 70  NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129
           +G YTVG+FMTKKEDLH VK TTTVDEALE LVE RITGFPVID+DWKLVG+VSDYDLLA
Sbjct: 2   SGVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLA 61
Query: 130 LDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDA 189
           LDSISG  + + S+FP V+STWKTFN +Q+LLSKTNGK+VGDLMTPAPLVV E TNLEDA
Sbjct: 62  LDSISGSGRTENSMFPEVDSTWKTFNAVQKLLSKTNGKLVGDLMTPAPLVVEEKTNLEDA 121
Query: 190 ARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIKRDGERS 233
           A++LLETKYRRLPVVD  GKLVG+ITRGNVVRAALQIKR G+R+
Sbjct: 122 AKILLETKYRRLPVVDSDGKLVGIITRGNVVRAALQIKRSGDRN 165

>pdb|3SL7|A Chain A, Crystal Structure Of Cbs-Pair Protein, Cbsx2 From Arabidopsis Thaliana Length = 180

Iteration: 1
 Score =  252 bits (644), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 121/159 (76%), Positives = 145/159 (91%)
Query: 73  YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS 132
           YTVGDF T +++LH VK +T+VD+ALE LVEK++TG PVIDD+W LVGVVSDYDLLALDS
Sbjct: 4   YTVGDFXTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDS 63
Query: 133 ISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARL 192
           ISG +QNDT+LFP+V+STWKTFNELQ+L+SKT GKVVGDL TP+PLVV ++TNLEDAARL
Sbjct: 64  ISGRSQNDTNLFPDVDSTWKTFNELQKLISKTYGKVVGDLXTPSPLVVRDSTNLEDAARL 123
Query: 193 LLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIKRDGE 231
           LLETK+RRLPVVD  GKL+G++TRGNVVRAALQIKR+ +
Sbjct: 124 LLETKFRRLPVVDADGKLIGILTRGNVVRAALQIKRNAD 162

>pdb|4GQW|A Chain A, Crystal Structure Of Cbs-pair Protein, Cbsx1 (loop Deletion) From Arabidopsis Thaliana Length = 152

Iteration: 1
 Score =  246 bits (627), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 125/164 (76%), Positives = 138/164 (84%), Gaps = 14/164 (8%)
Query: 70  NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129
           +G YTVG+FMTKKEDLH VK TTTVDEALE LVE RITGFPVID+DWKLVG+VSDYDLLA
Sbjct: 2   SGVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLA 61
Query: 130 LDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDA 189
           LDS               +STWKTFN +Q+LLSKTNGK+VGDLMTPAPLVV E TNLEDA
Sbjct: 62  LDS--------------GDSTWKTFNAVQKLLSKTNGKLVGDLMTPAPLVVEEKTNLEDA 107
Query: 190 ARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIKRDGERS 233
           A++LLETKYRRLPVVD  GKLVG+ITRGNVVRAALQIKR G+R+
Sbjct: 108 AKILLETKYRRLPVVDSDGKLVGIITRGNVVRAALQIKRSGDRN 151

>pdb|2CU0|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate Dehydrogenase From Pyrococcus Horikoshii Ot3 Length = 486

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 69/138 (50%), Gaps = 35/138 (25%)
Query: 83  EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTS 142
           ED+  +    TVD AL  + +  I G PV++D+ K+VG+++  D+ A +           
Sbjct: 101 EDVITIAPDETVDFALFLMEKHGIDGLPVVEDE-KVVGIITKKDIAARE----------- 148
Query: 143 LFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLP 202
                                  GK+V +LMT   + V E+  +E+A ++++E +  RLP
Sbjct: 149 -----------------------GKLVKELMTKEVITVPESIEVEEALKIMIENRIDRLP 185
Query: 203 VVDGYGKLVGLITRGNVV 220
           VVD  GKLVGLIT  ++V
Sbjct: 186 VVDERGKLVGLITMSDLV 203

>pdb|2YZQ|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein From Pyrococcus Horikoshii Length = 282

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 61/125 (48%), Gaps = 33/125 (26%)
Query: 97  ALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNE 156
           ALE   + ++  FPV++ + KLVG++S                                 
Sbjct: 23  ALELFKKYKVRSFPVVNKEGKLVGIIS--------------------------------- 49
Query: 157 LQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITR 216
           ++R+L   + + +  L+     VV EN  L+ AA+L+LE  YRR+ VVD  GK VG++T 
Sbjct: 50  VKRILVNPDEEQLAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTV 109
Query: 217 GNVVR 221
           G+++R
Sbjct: 110 GDIIR 114

>pdb|3KPB|A Chain A, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100 In Complex With 5 -Methylthioadenosine And S-Adenosyl-L- Methionine. Length = 122

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 42/65 (64%)
Query: 168 VVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIK 227
           +V D+++  P+  H N ++ +AA++L++     LP+VD +GKLVG+IT  ++ +A  Q K
Sbjct: 2   LVKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQNK 61
Query: 228 RDGER 232
           +  E 
Sbjct: 62  KTIEE 66

>pdb|3KPC|A Chain A, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100 In Complex With 5 -Methylthioadenosine And S-Adenosyl-L- Methionine Length = 124

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 42/65 (64%)
Query: 168 VVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIK 227
           +V D+++  P+  H N ++ +AA++L++     LP+VD +GKLVG+IT  ++ +A  Q K
Sbjct: 4   LVKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQNK 63
Query: 228 RDGER 232
           +  E 
Sbjct: 64  KTIEE 68

>pdb|3KH5|A Chain A, Crystal Structure Of Protein Mj1225 From Methanocaldococcus Jannaschii, A Putative Archaeal Homolog Of G-Ampk. Length = 280

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 70/141 (49%), Gaps = 31/141 (21%)
Query: 82  KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDT 141
           +E++  +K    +DEA+E  + K + G P+++D+ +L+ ++++ D++             
Sbjct: 91  EENVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVI------------- 137
Query: 142 SLFPNVNSTWKTFNELQRLLSKTN-GKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRR 200
                           + LL K +  +V+ D +T   +V      L+D AR ++   +RR
Sbjct: 138 ----------------RALLDKIDENEVIDDYITRDVIVATPGERLKDVARTMVRNGFRR 181
Query: 201 LPVVDGYGKLVGLITRGNVVR 221
           LPVV   G+LVG+IT  + ++
Sbjct: 182 LPVV-SEGRLVGIITSTDFIK 201

>pdb|1O50|A Chain A, Crystal Structure Of A Cbs Domain-Containing Protein (Tm0935) From Thermotoga Maritima At 1.87 A Resolution Length = 157

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 68/126 (53%), Gaps = 13/126 (10%)
Query: 87  AVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPN 146
            V+  T ++E ++R++E  +T    +  D KLVG++    LL    +SG +      F  
Sbjct: 28  VVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLL---KVSGFH-----FFGF 79
Query: 147 VNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDG 206
           +       + ++RL++K   +++ D     P+ VH +T LE+A +L+++   + +PVVD 
Sbjct: 80  IPKEELIRSSMKRLIAKNASEIMLD-----PVYVHMDTPLEEALKLMIDNNIQEMPVVDE 134
Query: 207 YGKLVG 212
            G++VG
Sbjct: 135 KGEIVG 140

>pdb|1VRD|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate Dehydrogenase (Tm1347) From Thermotoga Maritima At 2.18 A Resolution Length = 494

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 61/125 (48%), Gaps = 34/125 (27%)
Query: 93  TVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWK 152
           TV EA++ + E +I G PV+D++ +LVG++++ D+                         
Sbjct: 113 TVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDV------------------------- 147
Query: 153 TFNELQRLLSKTNGKVVGDLMTPAP--LVVHENTNLEDAARLLLETKYRRLPVVDGYGKL 210
                ++ LSK     + DLMTP    +V   + +LE A  +L + +  +LP+V    KL
Sbjct: 148 ---RFEKNLSKK----IKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKL 200
Query: 211 VGLIT 215
           VGLIT
Sbjct: 201 VGLIT 205

>pdb|2P9M|A Chain A, Crystal Structure Of Conserved Hypothetical Protein Mj0922 From Methanocaldococcus Jannaschii Dsm 2661 Length = 138

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 65/136 (47%), Gaps = 32/136 (23%)
Query: 96  EALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFN 155
           EA E+ ++ +I+  PVIDD+ K++G+V+  D+       G N            T +T  
Sbjct: 29  EAFEKXLKYKISSLPVIDDENKVIGIVTTTDI-------GYN------LIRDKYTLET-- 73
Query: 156 ELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLL-----LETKYRRLPVVDGYGKL 210
                        +GD+ T   + +HE+ ++ +A +        E    +LPVVD   KL
Sbjct: 74  ------------TIGDVXTKDVITIHEDASILEAIKKXDISGKKEEIINQLPVVDKNNKL 121
Query: 211 VGLITRGNVVRAALQI 226
           VG+I+ G+++R   +I
Sbjct: 122 VGIISDGDIIRTISKI 137

>pdb|2QLV|C Chain C, Crystal Structure Of The Heterotrimer Core Of The S. Cerevisiae Ampk Homolog Snf1 Length = 315

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 74/151 (49%), Gaps = 21/151 (13%)
Query: 75  VGDF-MTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSI 133
           +GD  +  ++++ + + TT V + ++ L + R++  P+ID++  L+ V   YD+L L  I
Sbjct: 182 IGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGL--I 239
Query: 134 SGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLL 193
            GG  ND SL     +  +  ++ + + + T    +  +M              D  R  
Sbjct: 240 KGGIYNDLSLSVG-EALMRRSDDFEGVYTCTKNDKLSTIM--------------DNIR-- 282
Query: 194 LETKYRRLPVVDGYGKLVGLITRGNVVRAAL 224
            + +  R  VVD  G+LVG++T  ++++  L
Sbjct: 283 -KARVHRFFVVDDVGRLVGVLTLSDILKYIL 312

>pdb|3T4N|C Chain C, Structure Of The Regulatory Fragment Of Saccharomyces Cerevisiae Ampk In Complex With Adp Length = 323

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 74/151 (49%), Gaps = 21/151 (13%)
Query: 75  VGDF-MTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSI 133
           +GD  +  ++++ + + TT V + ++ L + R++  P+ID++  L+ V   YD+L L  I
Sbjct: 189 IGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGL--I 246
Query: 134 SGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLL 193
            GG  ND SL     +  +  ++ + + + T    +  +M              D  R  
Sbjct: 247 KGGIYNDLSLSVG-EALMRRSDDFEGVYTCTKNDKLSTIM--------------DNIR-- 289
Query: 194 LETKYRRLPVVDGYGKLVGLITRGNVVRAAL 224
            + +  R  VVD  G+LVG++T  ++++  L
Sbjct: 290 -KARVHRFFVVDDVGRLVGVLTLSDILKYIL 319

>pdb|2NYC|A Chain A, Crystal Structure Of The Bateman2 Domain Of Yeast Snf4 Length = 144

Iteration: 1
 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 74/151 (49%), Gaps = 21/151 (13%)
Query: 75  VGDF-MTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSI 133
           +GD  +  ++++ + + TT V + ++ L + R++  P+ID++  L+ V   YD+L L  I
Sbjct: 10  IGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGL--I 67
Query: 134 SGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLL 193
            GG  ND SL     +  +  ++ + + + T    +  +M              D  R  
Sbjct: 68  KGGIYNDLSLSVG-EALMRRSDDFEGVYTCTKNDKLSTIM--------------DNIR-- 110
Query: 194 LETKYRRLPVVDGYGKLVGLITRGNVVRAAL 224
            + +  R  VVD  G+LVG++T  ++++  L
Sbjct: 111 -KARVHRFFVVDDVGRLVGVLTLSDILKYIL 140

>pdb|2NYE|A Chain A, Crystal Structure Of The Bateman2 Domain Of Yeast Snf4 Length = 144

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 72/151 (47%), Gaps = 21/151 (13%)
Query: 75  VGDF-MTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSI 133
           +GD  +  +++  + + TT V + ++ L + R++  P+ID++  L+ V   YD+L L  I
Sbjct: 10  IGDLNIITQDNXKSCQXTTPVIDVIQXLTQGRVSSVPIIDENGYLINVYEAYDVLGL--I 67
Query: 134 SGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLL 193
            GG  ND SL     +  +  ++ + + + T                 +N  L      +
Sbjct: 68  KGGIYNDLSLSVG-EALXRRSDDFEGVYTCT-----------------KNDKLSTIXDNI 109
Query: 194 LETKYRRLPVVDGYGKLVGLITRGNVVRAAL 224
            + +  R  VVD  G+LVG++T  ++++  L
Sbjct: 110 RKARVHRFFVVDDVGRLVGVLTLSDILKYIL 140

>pdb|2V8Q|E Chain E, Crystal Structure Of The Regulatory Fragment Of Mammalian Ampk In Complexes With Amp Length = 330

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 70/155 (45%), Gaps = 29/155 (18%)
Query: 77  DFMTKK-EDLH--------AVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDL 127
           +FM+K  E+L          V+TTT V  AL   V+ R++  PV+D+  ++V + S +D+
Sbjct: 186 EFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDV 245
Query: 128 LALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLE 187
           + L +    N  D S+   +      F  + +                    +HE   LE
Sbjct: 246 INLAAEKTYNNLDVSVTKALQHRSHYFEGVLKCY------------------LHE--TLE 285
Query: 188 DAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRA 222
                L+E +  RL VVD +  + G+++  ++++A
Sbjct: 286 AIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQA 320

>pdb|2YVY|A Chain A, Crystal Structure Of Magnesium Transporter Mgte Cytosolic Domain, Mg2+ Bound Form Length = 278

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 34/52 (65%)
Query: 169 VGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVV 220
           V ++M P  + V  +T+ E+ ARL+ +  +  LPVVD  G+LVG++T  +V+
Sbjct: 201 VAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVL 252

>pdb|2YVX|A Chain A, Crystal Structure Of Magnesium Transporter Mgte Length = 473

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 34/52 (65%)
Query: 169 VGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVV 220
           V ++M P  + V  +T+ E+ ARL+ +  +  LPVVD  G+LVG++T  +V+
Sbjct: 221 VAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVL 272

>pdb|4FRY|A Chain A, The Structure Of A Putative Signal-Transduction Protein With Cbs Domains From Burkholderia Ambifaria Mc40-6 Length = 157

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 72/161 (44%), Gaps = 32/161 (19%)
Query: 68  PRNGTYTVGDFMTKKED----LHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVS 123
           P + + TV   +  K D    ++ V     V +A++ + EK I    V+D D  + G+V+
Sbjct: 2   PGSMSTTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVDGD-DIAGIVT 60
Query: 124 DYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHEN 183
           + D                        +     LQ   SK     V ++MT     V  +
Sbjct: 61  ERD------------------------YARKVVLQERSSKATR--VEEIMTAKVRYVEPS 94
Query: 184 TNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAAL 224
            + ++   L+ E + R LPV+DG GKL+GLI+ G++V++ +
Sbjct: 95  QSTDECMALMTEHRMRHLPVLDG-GKLIGLISIGDLVKSVI 134

>pdb|1ZFJ|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh; Ec 1.1.1.205) From Streptococcus Pyogenes Length = 491

Iteration: 1
 Score = 40.4 bits (93), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 52/124 (41%), Gaps = 33/124 (26%)
Query: 94  VDEALERLVEKRITGFPVIDD--DWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTW 151
           V EA E     RI+G P+++   + KLVG++++ D                         
Sbjct: 109 VSEAEELXQRYRISGVPIVETLANRKLVGIITNRD------------------------- 143
Query: 152 KTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLV 211
                  R +S  N  +     +   +     T+LE A R+L E +  +LP+VD  G+L 
Sbjct: 144 ------XRFISDYNAPISEHXTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLS 197
Query: 212 GLIT 215
           GLIT
Sbjct: 198 GLIT 201

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	234
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	3e-62
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	4e-45
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	2e-15
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	9e-37
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	6e-14
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	1e-36
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	2e-13
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	2e-36
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	2e-36
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	2e-14
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	9e-36
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	2e-34
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	5e-34
1pvm_A	184	Conserved hypothetical protein TA0289; structural	4e-33
1pvm_A	184	Conserved hypothetical protein TA0289; structural	2e-12
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	1e-32
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	2e-13
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	1e-31
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	1e-06
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	4e-31
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	4e-12
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	5e-31
1pbj_A	125	Hypothetical protein; structural genomics, domain,	7e-31
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	1e-30
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	2e-13
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	1e-09
1vr9_A	213	CBS domain protein/ACT domain protein; structural	1e-29
1vr9_A	213	CBS domain protein/ACT domain protein; structural	7e-09
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	1e-29
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	1e-11
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	2e-29
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	4e-26
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	4e-10
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	4e-28
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	2e-07
3ddj_A	296	CBS domain-containing protein; structural genomics	7e-28
3ddj_A	296	CBS domain-containing protein; structural genomics	2e-26
3ddj_A	296	CBS domain-containing protein; structural genomics	9e-25
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	1e-27
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	7e-27
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	9e-13
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	1e-26
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	3e-24
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	2e-16
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	5e-26
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	6e-14
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	4e-13
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	7e-09
4fry_A	157	Putative signal-transduction protein with CBS DOM;	7e-26
4fry_A	157	Putative signal-transduction protein with CBS DOM;	1e-08
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	9e-25
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	3e-23
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	1e-19
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	4e-10
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	3e-24
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	2e-07
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	3e-23
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	8e-23
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	3e-18
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	1e-10
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	6e-09
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	1e-16
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	1e-06
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	3e-16
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	5e-05
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	4e-16
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	1e-06
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	5e-16
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	6e-05
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	5e-16
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	8e-16
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	1e-04
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	3e-15
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	8e-08
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	4e-15
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	1e-07
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	2e-12
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	2e-12
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	3e-12
2oux_A	286	Magnesium transporter; 10001B, structural genomics	2e-11
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	3e-11
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	2e-09
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	4e-09
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	1e-08
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	4e-08
3ocm_A	173	Putative membrane protein; structural genomics, PS	2e-08
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	8e-08
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	7e-07
3oco_A	153	Hemolysin-like protein containing CBS domains; str	3e-06
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	4e-06
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	5e-06
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	5e-06
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	6e-06
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	7e-06
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	9e-06
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	1e-05
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	4e-05
3fio_A	70	A cystathionine beta-synthase domain protein fused	7e-05
3fio_A	70	A cystathionine beta-synthase domain protein fused	7e-04

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180

 Score =  191 bits (488), Expect = 3e-62
 Identities = 123/162 (75%), Positives = 148/162 (91%)

Query: 73  YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS 132
           YTVGDFMT +++LH VK +T+VD+ALE LVEK++TG PVIDD+W LVGVVSDYDLLALDS
Sbjct: 4   YTVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDS 63

Query: 133 ISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARL 192
           ISG +QNDT+LFP+V+STWKTFNELQ+L+SKT GKVVGDLMTP+PLVV ++TNLEDAARL
Sbjct: 64  ISGRSQNDTNLFPDVDSTWKTFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAARL 123

Query: 193 LLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIKRDGERST 234
           LLETK+RRLPVVD  GKL+G++TRGNVVRAALQIKR+ +  +
Sbjct: 124 LLETKFRRLPVVDADGKLIGILTRGNVVRAALQIKRNADSIS 165

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score =  147 bits (372), Expect = 4e-45
 Identities = 35/155 (22%), Positives = 73/155 (47%), Gaps = 15/155 (9%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSI 133
            V   ++       V+  T ++E ++R++E  +T    +  D KLVG++    LL     
Sbjct: 17  DVCKLISL--KPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLK---- 70

Query: 134 SGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLL 193
                +    F  +       + ++RL++K       ++M   P+ VH +T LE+A +L+
Sbjct: 71  ----VSGFHFFGFIPKEELIRSSMKRLIAKN----ASEIML-DPVYVHMDTPLEEALKLM 121

Query: 194 LETKYRRLPVVDGYGKLVGLITRGNVVRAALQIKR 228
           ++   + +PVVD  G++VG +    ++ A  + + 
Sbjct: 122 IDNNIQEMPVVDEKGEIVGDLNSLEILLALWKGRE 156

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score = 70.0 bits (172), Expect = 2e-15
 Identities = 18/69 (26%), Positives = 33/69 (47%)

Query: 155 NELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLI 214
           +++         K V  L++  P VV E+T +E+    +LE    R   V    KLVG+I
Sbjct: 4   DKIHHHHHHMKVKDVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMI 63

Query: 215 TRGNVVRAA 223
              ++++ +
Sbjct: 64  PVMHLLKVS 72

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score =  126 bits (317), Expect = 9e-37
 Identities = 26/149 (17%), Positives = 54/149 (36%), Gaps = 24/149 (16%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSI 133
           TV  F+   + +  V+    +D AL  L +   +  PV+D  +KL G++S   ++     
Sbjct: 12  TVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMMM----- 66

Query: 134 SGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLL 193
                                   +    +     V ++M      +  + +L  A  L+
Sbjct: 67  -----------------DAILGLERIEFERLETMKVEEVMNRNIPRLRLDDSLMKAVGLI 109

Query: 194 LETKYRRLPVVDGYGKLVGLITRGNVVRA 222
           +   +  + V +  G   G+ TR  V++ 
Sbjct: 110 VN--HPFVCVENDDGYFAGIFTRREVLKQ 136

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score = 66.3 bits (162), Expect = 6e-14
 Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 6/75 (8%)

Query: 156 ELQRLLSKTNGKVVGDLMTPAPLV--VHENTNLEDAARLLLETKYRRLPVVDGYGKLVGL 213
           E    +  T    V   + PA  V  V     L+ A  +L +T Y  +PV+D   KL GL
Sbjct: 4   EHNEFMQMT----VKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGL 59

Query: 214 ITRGNVVRAALQIKR 228
           I+   ++ A L ++R
Sbjct: 60  ISMTMMMDAILGLER 74

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score =  124 bits (314), Expect = 2e-36
 Identities = 31/159 (19%), Positives = 60/159 (37%), Gaps = 24/159 (15%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSI 133
            V D M   E +  V+    ++ AL  LV+   +  PV+D  +KL G++S   +  LD I
Sbjct: 16  FVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMI--LDGI 73

Query: 134 SGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLL 193
            G  + +      +                     V  +M     V+    +   A  + 
Sbjct: 74  LGLERIEFERLEEMK--------------------VEQVMKQDIPVLKLEDSFAKALEMT 113

Query: 194 LETKYRRLPVVDGYGKLVGLITRGNVVRAALQIKRDGER 232
           ++  +  +  V+  G   G++TR  +++   +  R   R
Sbjct: 114 ID--HPFICAVNEDGYFEGILTRRAILKLLNKKVRQHNR 150

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score =  124 bits (314), Expect = 2e-36
 Identities = 28/159 (17%), Positives = 60/159 (37%), Gaps = 24/159 (15%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSI 133
           TVG FM + + +  V+    ++ AL  L +   T  PV+D  ++L G++    +  ++SI
Sbjct: 15  TVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMI--MNSI 72

Query: 134 SGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLL 193
            G  + +      +                     V ++M      +H N  +     ++
Sbjct: 73  FGLERIEFEKLDQIT--------------------VEEVMLTDIPRLHINDPIMKGFGMV 112

Query: 194 LETKYRRLPVVDGYGKLVGLITRGNVVRAALQIKRDGER 232
           +      + V +      G+ TR  V++   +  R   +
Sbjct: 113 IN--NGFVCVENDEQVFEGIFTRRVVLKELNKHIRSLNK 149

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 67.5 bits (165), Expect = 2e-14
 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 6/75 (8%)

Query: 156 ELQRLLSKTNGKVVGDLMTPAPLV--VHENTNLEDAARLLLETKYRRLPVVDGYGKLVGL 213
           +  +LL  T    VG  M  A  V  V    NLE A  +L +T Y  +PV+D   +L GL
Sbjct: 7   QSDQLLEAT----VGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGL 62

Query: 214 ITRGNVVRAALQIKR 228
           I    ++ +   ++R
Sbjct: 63  IGTNMIMNSIFGLER 77

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160

 Score =  123 bits (310), Expect = 9e-36
 Identities = 40/161 (24%), Positives = 64/161 (39%), Gaps = 22/161 (13%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSI 133
            V D MT+    H +  T T+++A   +    I   P++D + KL+G+VS  DLLA    
Sbjct: 6   KVEDMMTR--HPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQES 63

Query: 134 SGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLL 193
           S                        +  S      + ++M      V     L+++A  +
Sbjct: 64  S-------------------LQRSAQGDSLAFETPLFEVMHTDVTSVAPQAGLKESAIYM 104

Query: 194 LETKYRRLPVVDGYGKLVGLITRGNVVRAALQIKRDGERST 234
            + K   LPVV     LVG+IT  + V  A+ +    E S 
Sbjct: 105 QKHKIGCLPVVAK-DVLVGIITDSDFVTIAINLLELQEESE 144

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score =  119 bits (300), Expect = 2e-34
 Identities = 37/158 (23%), Positives = 69/158 (43%), Gaps = 33/158 (20%)

Query: 74  TVGDF-MTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS 132
            +GD  +  ++++ + + TT V + ++ L + R++  P+ID++  L+ V   YD+L L  
Sbjct: 9   PIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGL-- 66

Query: 133 ISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMT------PAPLVVHENTNL 186
           I GG  ND SL                         VG+ +              +N  L
Sbjct: 67  IKGGIYNDLSLS------------------------VGEALMRRSDDFEGVYTCTKNDKL 102

Query: 187 EDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAAL 224
                 + + +  R  VVD  G+LVG++T  ++++  L
Sbjct: 103 STIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYIL 140

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score =  117 bits (295), Expect = 4e-33
 Identities = 30/149 (20%), Positives = 56/149 (37%), Gaps = 28/149 (18%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSI 133
            V   M    +   V   TTV +A++ + E  + G  V DD+   VG++S+  ++     
Sbjct: 10  RVEKIMNS--NFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIP 67

Query: 134 SGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLL 193
                ++                            +  +M      V  + +++D A  L
Sbjct: 68  RNKKPDEVP--------------------------IRLVMRKPIPKVKSDYDVKDVAAYL 101

Query: 194 LETKYRRLPVVDGYGKLVGLITRGNVVRA 222
            E    R  VVD  G++VG++T  ++ R 
Sbjct: 102 SENGLERCAVVDDPGRVVGIVTLTDLSRY 130

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score = 62.8 bits (153), Expect = 2e-12
 Identities = 15/61 (24%), Positives = 29/61 (47%)

Query: 169 VGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIKR 228
           V  +M      V+ NT + DA +++ E     L V D  G  VGL++  ++++  +   +
Sbjct: 11  VEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNK 70

Query: 229 D 229
            
Sbjct: 71  K 71

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} Length = 138

 Score =  114 bits (288), Expect = 1e-32
 Identities = 43/158 (27%), Positives = 75/158 (47%), Gaps = 34/158 (21%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSI 133
            V D MTK  ++   K    V EA E++++ +I+  PVIDD+ K++G+V+  D+      
Sbjct: 9   KVKDVMTK--NVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIG----- 61

Query: 134 SGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLL 193
                                   +  L  T    +GD+MT   + +HE+ ++ +A + +
Sbjct: 62  ------------------YNLIRDKYTLETT----IGDVMTKDVITIHEDASILEAIKKM 99

Query: 194 L-----ETKYRRLPVVDGYGKLVGLITRGNVVRAALQI 226
                 E    +LPVVD   KLVG+I+ G+++R   +I
Sbjct: 100 DISGKKEEIINQLPVVDKNNKLVGIISDGDIIRTISKI 137

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} Length = 138

 Score = 64.6 bits (158), Expect = 2e-13
 Identities = 16/64 (25%), Positives = 32/64 (50%)

Query: 169 VGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIKR 228
           V D+MT   +    +  + +A   +L+ K   LPV+D   K++G++T  ++    ++ K 
Sbjct: 10  VKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLIRDKY 69

Query: 229 DGER 232
             E 
Sbjct: 70  TLET 73

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A* Length = 185

 Score =  113 bits (284), Expect = 1e-31
 Identities = 32/166 (19%), Positives = 66/166 (39%), Gaps = 14/166 (8%)

Query: 72  TYTVGDFMTKKEDLHAV----KTTTTVDEALERLVEKRITGFPVIDDD--WKLVGVVSDY 125
                D M  + +   +    + + TV++    + E   +GFPV+      +LVG V   
Sbjct: 10  KTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRR 69

Query: 126 DLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKV--VGDLMTPAPLVVHEN 183
           DL+     +            V+++   F E    L         + +++  +P  V + 
Sbjct: 70  DLIISIENA-----RKKQDGVVSTSIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDL 124

Query: 184 TNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIKRD 229
           T +E    +  +   R+  V    G+L+G+IT+ +V++   Q+   
Sbjct: 125 TPMEIVVDIFRKLGLRQCLVTHN-GRLLGIITKKDVLKHIAQMANQ 169

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A* Length = 185

 Score = 46.4 bits (110), Expect = 1e-06
 Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 9/74 (12%)

Query: 169 VGDLMTP----APLVV--HENTNLEDAARLLLETKYRRLPVVD--GYGKLVGLITRGNVV 220
             D+M P      L V   ++  +ED   ++ ET Y   PVV      +LVG + R +++
Sbjct: 13  AMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLI 72

Query: 221 RAALQIKRDGERST 234
             +++  R  +   
Sbjct: 73  I-SIENARKKQDGV 85

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A Length = 133

 Score =  110 bits (278), Expect = 4e-31
 Identities = 31/154 (20%), Positives = 60/154 (38%), Gaps = 35/154 (22%)

Query: 72  TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD 131
             T  D M     +  V    T+  A + + E  I   P+  DD +L G+++D D++   
Sbjct: 7   MTTARDIMNA--GVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIV--- 61

Query: 132 SISGGNQNDTSLFPNVNSTWKTFNELQRLLSK---TNGKVVGDLMTPAPLVVHENTNLED 188
                                      + L+     N    G+L   +   V  N ++++
Sbjct: 62  --------------------------IKGLAAGLDPNTATAGELARDSIYYVDANASIQE 95

Query: 189 AARLLLETKYRRLPVVDGYGKLVGLITRGNVVRA 222
              ++ E + RR+PV+    +LVG++T  ++ R 
Sbjct: 96  MLNVMEEHQVRRVPVISE-HRLVGIVTEADIARH 128

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A Length = 133

 Score = 60.6 bits (148), Expect = 4e-12
 Identities = 17/66 (25%), Positives = 28/66 (42%)

Query: 169 VGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIKR 228
             D+M      V E+  L  AA+ + E     LP+     +L G++T  ++V   L    
Sbjct: 10  ARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGL 69

Query: 229 DGERST 234
           D   +T
Sbjct: 70  DPNTAT 75

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133

 Score =  110 bits (277), Expect = 5e-31
 Identities = 32/149 (21%), Positives = 63/149 (42%), Gaps = 31/149 (20%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSI 133
            V ++M     + +V     +++  + + EK I    V+D + K VG++++ D++    I
Sbjct: 5   IVKEYMKT--QVISVTKDAKLNDIAKVMTEKNIGSVIVVDGN-KPVGIITERDIVKA--I 59

Query: 134 SGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLL 193
             G   +T                             + MT + + + E++ +  A  L+
Sbjct: 60  GKGKSLETK--------------------------AEEFMTASLITIREDSPITGALALM 93

Query: 194 LETKYRRLPVVDGYGKLVGLITRGNVVRA 222
            +   R LPVVD  G L G+I+  ++ RA
Sbjct: 94  RQFNIRHLPVVDDKGNLKGIISIRDITRA 122

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125

 Score =  109 bits (275), Expect = 7e-31
 Identities = 26/152 (17%), Positives = 60/152 (39%), Gaps = 31/152 (20%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSI 133
            V D M    D+  +  T ++++ L   VE       V+ +    VG+V+ +D+L     
Sbjct: 2   RVEDVMVT--DVDTIDITASLEDVLRNYVENAKGSSVVVKEG-VRVGIVTTWDVLEA-IA 57

Query: 134 SGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLL 193
            G +  +                            V ++M    + +     +++AA  +
Sbjct: 58  EGDDLAEVK--------------------------VWEVMERDLVTISPRATIKEAAEKM 91

Query: 194 LETKYRRLPVVDGYGKLVGLITRGNVVRAALQ 225
           ++    RL V +   +++G+I+  +++RA + 
Sbjct: 92  VKNVVWRLLVEED-DEIIGVISATDILRAKMA 122

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* Length = 122

 Score =  108 bits (273), Expect = 1e-30
 Identities = 30/148 (20%), Positives = 62/148 (41%), Gaps = 33/148 (22%)

Query: 75  VGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSIS 134
           V D ++K        +  ++ EA + L++  I   P++D+  KLVG+++ +D+       
Sbjct: 3   VKDILSK--PPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDI------- 53

Query: 135 GGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLL 194
                                         N K + ++MT   +  HE+  ++  A  + 
Sbjct: 54  ------------------------AKALAQNKKTIEEIMTRNVITAHEDEPVDHVAIKMS 89

Query: 195 ETKYRRLPVVDGYGKLVGLITRGNVVRA 222
           +     +PVVD Y ++VG++T  ++ R 
Sbjct: 90  KYNISGVPVVDDYRRVVGIVTSEDISRL 117

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* Length = 122

 Score = 64.1 bits (157), Expect = 2e-13
 Identities = 20/55 (36%), Positives = 38/55 (69%)

Query: 168 VVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRA 222
           +V D+++  P+  H N ++ +AA++L++     LP+VD +GKLVG+IT  ++ +A
Sbjct: 2   LVKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKA 56

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* Length = 122

 Score = 53.7 bits (130), Expect = 1e-09
 Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 69  RNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
                T+ + MT+  ++        VD    ++ +  I+G PV+DD  ++VG+V+  D+ 
Sbjct: 58  AQNKKTIEEIMTR--NVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDIS 115

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 Length = 213

 Score =  109 bits (273), Expect = 1e-29
 Identities = 36/153 (23%), Positives = 58/153 (37%), Gaps = 35/153 (22%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSI 133
            V  ++T+  D   V+ + TV E L R+ + +     V D +    GVV+  DLL LD  
Sbjct: 14  KVKKWVTQ--DFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLD-- 69

Query: 134 SGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLL 193
                                              V + ++     VHE  N+  A  L 
Sbjct: 70  -------------------------------LDSSVFNKVSLPDFFVHEEDNITHALLLF 98

Query: 194 LETKYRRLPVVDGYGKLVGLITRGNVVRAALQI 226
           LE +   LPVVD   +L G ++  + + A ++ 
Sbjct: 99  LEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEA 131

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 Length = 213

 Score = 53.2 bits (128), Expect = 7e-09
 Identities = 19/105 (18%), Positives = 41/105 (39%), Gaps = 3/105 (2%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL-ALDS 132
           +V + ++       V     +  AL   +E +    PV+D++ +L G VS +D L AL  
Sbjct: 73  SVFNKVSL--PDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIE 130

Query: 133 ISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAP 177
               +         +        ++   L+ +N  ++  + T + 
Sbjct: 131 ALAMDVPGIRFSVLLEDKPGELRKVVDALALSNINILSVITTRSG 175

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 Length = 138

 Score =  106 bits (267), Expect = 1e-29
 Identities = 35/152 (23%), Positives = 64/152 (42%), Gaps = 30/152 (19%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSI 133
            +  +MTK   L  VK +T+V EA   ++E  +    VI+DD  +VG  +  D++    I
Sbjct: 8   PIKVYMTK--KLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRR-VI 64

Query: 134 SGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLL 193
             G   D                            V  +MT   +  + NT L +  R +
Sbjct: 65  VPGLPYDIP--------------------------VERIMTRNLITANVNTPLGEVLRKM 98

Query: 194 LETKYRRLPVVDGYGKLVGLITRGNVVRAALQ 225
            E + + + + +  GK+VG+ T  +++ A+ +
Sbjct: 99  AEHRIKHILIEEE-GKIVGIFTLSDLLEASRR 129

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 Length = 138

 Score = 59.5 bits (145), Expect = 1e-11
 Identities = 16/64 (25%), Positives = 34/64 (53%)

Query: 169 VGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIKR 228
           +   MT   L V  +T++++A+RL++E     L V++  G +VG  T+ +++R  +    
Sbjct: 9   IKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGL 68

Query: 229 DGER 232
             + 
Sbjct: 69  PYDI 72

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score =  110 bits (277), Expect = 2e-29
 Identities = 26/151 (17%), Positives = 59/151 (39%), Gaps = 19/151 (12%)

Query: 72  TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD 131
              + D++T+  D+        + +    +V       PV+ +  +LVG+++  D + L 
Sbjct: 147 NEVIDDYITR--DVIVATPGERLKDVARTMVRNGFRRLPVVSEG-RLVGIITSTDFIKL- 202

Query: 132 SISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAAR 191
                          + S W   +     + +     + ++M    +   E   L+  A 
Sbjct: 203 ---------------LGSDWAFNHMQTGNVREITNVRMEEIMKRDVITAKEGDKLKKIAE 247

Query: 192 LLLETKYRRLPVVDGYGKLVGLITRGNVVRA 222
           +++      LPVVD   ++ G+IT  +V++ 
Sbjct: 248 IMVTNDIGALPVVDENLRIKGIITEKDVLKY 278

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score =  101 bits (253), Expect = 4e-26
 Identities = 32/159 (20%), Positives = 66/159 (41%), Gaps = 16/159 (10%)

Query: 75  VGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVID-DDWKLVGVVSDYDLLALDSI 133
           +     K   +  V  TTT+ +AL  + E +    PV++  + K+VG+++  D++     
Sbjct: 6   MKIAQNK--KIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIV----- 58

Query: 134 SGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLL 193
                         +       + +R       + V ++M    + + EN ++++A    
Sbjct: 59  --------DFMGGGSKYNLIREKHERNFLAAINEPVREIMEENVITLKENADIDEAIETF 110

Query: 194 LETKYRRLPVVDGYGKLVGLITRGNVVRAALQIKRDGER 232
           L       P+V+   +L+ LIT  +V+RA L    + E 
Sbjct: 111 LTKNVGGAPIVNDENQLISLITERDVIRALLDKIDENEV 149

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 57.5 bits (139), Expect = 4e-10
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 167 KVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGY-GKLVGLITRGNVVRA 222
           +V+        + V+  T +  A   + E KYRRLPVV+    K+VG+IT  ++V  
Sbjct: 4   RVMKIAQNKKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDF 60

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1 Length = 135

 Score =  102 bits (257), Expect = 4e-28
 Identities = 37/153 (24%), Positives = 66/153 (43%), Gaps = 29/153 (18%)

Query: 74  TVGDFMTKK-EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS 132
           TV   + +K   + A+    +V  A++++    I    V+ D+ KLVG++++ D      
Sbjct: 7   TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDE-KLVGILTERDFSRKSY 65

Query: 133 ISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARL 192
           +      DT                           V ++MT     V  N   ED   L
Sbjct: 66  LLDKPVKDTQ--------------------------VKEIMTRQVAYVDLNNTNEDCMAL 99

Query: 193 LLETKYRRLPVVDGYGKLVGLITRGNVVRAALQ 225
           + E + R LPV+D  GK++GL++ G++V+ A+ 
Sbjct: 100 ITEMRVRHLPVLDD-GKVIGLLSIGDLVKDAIS 131

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1 Length = 135

 Score = 48.0 bits (115), Expect = 2e-07
 Identities = 11/64 (17%), Positives = 27/64 (42%), Gaps = 4/64 (6%)

Query: 169 VGDLMT---PAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQ 225
           V  L+       + +  + ++ +A + +       L V+    KLVG++T  +  R +  
Sbjct: 8   VKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKD-EKLVGILTERDFSRKSYL 66

Query: 226 IKRD 229
           + + 
Sbjct: 67  LDKP 70

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score =  106 bits (266), Expect = 7e-28
 Identities = 33/174 (18%), Positives = 71/174 (40%), Gaps = 26/174 (14%)

Query: 62  ITNSVPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGV 121
                   +  + V  FM+    +  +     +D+A++ ++ +     PVIDDD K+VG+
Sbjct: 145 FLLLYKDLDEIFPVKVFMST--KVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGI 202

Query: 122 VSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVH 181
           V+  +                    +    K  ++L        GKVV D+M    + + 
Sbjct: 203 VTVVNA-------------------IKQLAKAVDKLD--PDYFYGKVVKDVMVTNLVTID 241

Query: 182 ENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQI---KRDGER 232
           E  ++  AA  ++  +   L +++    + G+IT  +++ A   I   ++  E+
Sbjct: 242 ELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALHHILVMEKFKEK 295

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score =  102 bits (256), Expect = 2e-26
 Identities = 32/160 (20%), Positives = 61/160 (38%), Gaps = 31/160 (19%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSI 133
            + D+MT   +   V  T+    A+  +V +     PV+D + K VG+V++ + L     
Sbjct: 94  PIIDYMTP--NPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFL----- 146

Query: 134 SGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLL 193
                                              V   M+     +++   L+ A +L+
Sbjct: 147 ------------------------LLYKDLDEIFPVKVFMSTKVQTIYKEVRLDQAVKLM 182

Query: 194 LETKYRRLPVVDGYGKLVGLITRGNVVRAALQIKRDGERS 233
           L   +RRLPV+D   K+VG++T  N ++   +     +  
Sbjct: 183 LRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVDKLDPD 222

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 98.3 bits (245), Expect = 9e-25
 Identities = 29/156 (18%), Positives = 60/156 (38%), Gaps = 21/156 (13%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSI 133
            +   M K  +   +     +  A +++ E  I    V ++  K+ G+++  DLL     
Sbjct: 21  NIETLMIK--NPPILSKEDRLGSAFKKINEGGIGRIIVANE--KIEGLLTTRDLL----- 71

Query: 134 SGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLL 193
                       +   ++   +  Q  L   +   + D MTP P+ V+  ++   A  ++
Sbjct: 72  ------------STVESYCKDSCSQGDLYHISTTPIIDYMTPNPVTVYNTSDEFTAINIM 119

Query: 194 LETKYRRLPVVDGYGKLVGLITRGNVVRAALQIKRD 229
           +   +  LPVVD   K VG++T    +     +   
Sbjct: 120 VTRNFGSLPVVDINDKPVGIVTEREFLLLYKDLDEI 155

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} Length = 165

 Score =  102 bits (256), Expect = 1e-27
 Identities = 32/153 (20%), Positives = 60/153 (39%), Gaps = 28/153 (18%)

Query: 74  TVGDFMTKK-EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS 132
            V D + +K  D+  V    ++ EA   L   +I    V D D  ++G+ ++ DL+   +
Sbjct: 25  FVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVKAVA 84

Query: 133 ISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARL 192
             G      S                          V   MT   +    N+  +    +
Sbjct: 85  GQGAASLQQS--------------------------VSVAMTKNVVRCQHNSTTDQLMEI 118

Query: 193 LLETKYRRLPVVDGYGKLVGLITRGNVVRAALQ 225
           +   ++R +PV +  G+L G+I+ G+VV+A + 
Sbjct: 119 MTGGRFRHVPVEEN-GRLAGIISIGDVVKARIG 150

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* Length = 159

 Score =  100 bits (251), Expect = 7e-27
 Identities = 32/161 (19%), Positives = 59/161 (36%), Gaps = 35/161 (21%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSI 133
            V DF +       +    +V +A+  +  + +    V+D D  LVGV+S  DLL   SI
Sbjct: 18  QVKDFQSIP---VVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRA-SI 73

Query: 134 SGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLV--VHENTNLEDAAR 191
                                              V  +MT  P +        + D A+
Sbjct: 74  GQQELTSVP--------------------------VHIIMTRMPNITVCRREDYVMDIAK 107

Query: 192 LLLETKYRRLPVVD---GYGKLVGLITRGNVVRAALQIKRD 229
            L+E +   LPV+       +++G +T+ N+ +  + +  +
Sbjct: 108 HLIEKQIDALPVIKDTDKGFEVIGRVTKTNMTKILVSLSEN 148

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* Length = 159

 Score = 63.1 bits (154), Expect = 9e-13
 Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 2/81 (2%)

Query: 153 TFNELQRLLSKTNGKV-VGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLV 211
           T     +LL+    K+ V D  +  P+V+HEN ++ DA   +       L VVD    LV
Sbjct: 2   TGKTGTQLLADKLKKLQVKDFQSI-PVVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLV 60

Query: 212 GLITRGNVVRAALQIKRDGER 232
           G+++R +++RA++  +     
Sbjct: 61  GVLSRKDLLRASIGQQELTSV 81

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score =  103 bits (259), Expect = 1e-26
 Identities = 29/150 (19%), Positives = 64/150 (42%), Gaps = 22/150 (14%)

Query: 75  VGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSIS 134
           +        ++  V+TTT V  AL   V+ R++  PV+D+  ++V + S +D++ L +  
Sbjct: 195 LQIGTYA--NIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAA-- 250

Query: 135 GGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLL 194
                    + N++ +     +                     L  + +  LE     L+
Sbjct: 251 ------EKTYNNLDVSVTKALQ------------HRSHYFEGVLKCYLHETLEAIINRLV 292

Query: 195 ETKYRRLPVVDGYGKLVGLITRGNVVRAAL 224
           E +  RL VVD +  + G+++  ++++A +
Sbjct: 293 EAEVHRLVVVDEHDVVKGIVSLSDILQALV 322

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 97.3 bits (242), Expect = 3e-24
 Identities = 31/159 (19%), Positives = 57/159 (35%), Gaps = 14/159 (8%)

Query: 73  YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVID-DDWKLVGVVSDYDLLALD 131
           +   D +     L    T+  V +A   LV   +   P+ D      VG+++  D + + 
Sbjct: 35  HRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINI- 93

Query: 132 SISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAAR 191
                      L     S      EL+    +T  +V         + +  N +L DA  
Sbjct: 94  -----------LHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVS 142

Query: 192 LLLETKYRRLPVVD-GYGKLVGLITRGNVVRAALQIKRD 229
            L+  K  RLPV+D   G  + ++T   +++       +
Sbjct: 143 SLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITE 181

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 75.8 bits (186), Expect = 2e-16
 Identities = 24/156 (15%), Positives = 58/156 (37%), Gaps = 19/156 (12%)

Query: 69  RNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVID-DDWKLVGVVSDYDL 127
           +  T+         + L  +    ++ +A+  L+  +I   PVID +    + +++   +
Sbjct: 112 KIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRI 171

Query: 128 LALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLE 187
           L    +                           +SK+  + +         +V   T + 
Sbjct: 172 LKFLKLFITEFPKPE-----------------FMSKSLEE-LQIGTYANIAMVRTTTPVY 213

Query: 188 DAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAA 223
            A  + ++ +   LPVVD  G++V + ++ +V+  A
Sbjct: 214 VALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLA 249

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score =  101 bits (254), Expect = 5e-26
 Identities = 28/146 (19%), Positives = 62/146 (42%), Gaps = 20/146 (13%)

Query: 79  MTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQ 138
           +  ++++ + + TT V + ++ L + R++  P+ID++  L+ V   YD+L L        
Sbjct: 194 IITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGL-------- 245

Query: 139 NDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKY 198
                          +N+L   + +   +              +N  L      + + + 
Sbjct: 246 ----------IKGGIYNDLSLSVGEALMR--RSDDFEGVYTCTKNDKLSTIMDNIRKARV 293

Query: 199 RRLPVVDGYGKLVGLITRGNVVRAAL 224
            R  VVD  G+LVG++T  ++++  L
Sbjct: 294 HRFFVVDDVGRLVGVLTLSDILKYIL 319

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 68.8 bits (168), Expect = 6e-14
 Identities = 25/157 (15%), Positives = 62/157 (39%), Gaps = 17/157 (10%)

Query: 72  TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVID-DDWKLVGVVSDYDLLAL 130
           + T  D +     L  + T+  V ++L  L++  I   P+ D    +  G+++  D + +
Sbjct: 29  SKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTDFINV 88

Query: 131 DSISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAA 190
                 N +   L            +  +L    + +    +       +H +  L +A 
Sbjct: 89  IQYYFSNPDKFELV-----------DKLQLDGLKDIERALGVDQLDTASIHPSRPLFEAC 137

Query: 191 RLLLETKYRRLPVVD-----GYGKLVGLITRGNVVRA 222
             +LE++  R+P++D         +V ++T+  +++ 
Sbjct: 138 LKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKF 174

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 66.5 bits (162), Expect = 4e-13
 Identities = 22/138 (15%), Positives = 48/138 (34%), Gaps = 26/138 (18%)

Query: 84  DLHAVKTTTTVDEALERLVEKRITGFPVIDDD-----WKLVGVVSDYDLLALDSISGGNQ 138
           D  ++  +  + EA  +++E R    P+ID D       +V V++ Y +L          
Sbjct: 123 DTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILK--------- 173

Query: 139 NDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKY 198
                       +   N  +    K     +  +           T + D  ++L + + 
Sbjct: 174 ------------FVALNCRETHFLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRV 221

Query: 199 RRLPVVDGYGKLVGLITR 216
             +P++D  G L+ +   
Sbjct: 222 SSVPIIDENGYLINVYEA 239

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 54.2 bits (130), Expect = 7e-09
 Identities = 14/59 (23%), Positives = 32/59 (54%), Gaps = 4/59 (6%)

Query: 74  TVGDFMTKK----EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
           +VG+ + ++    E ++       +   ++ + + R+  F V+DD  +LVGV++  D+L
Sbjct: 257 SVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDIL 315

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria} Length = 157

 Score = 97.7 bits (244), Expect = 7e-26
 Identities = 37/162 (22%), Positives = 69/162 (42%), Gaps = 32/162 (19%)

Query: 68  PRNGTYTVGDFMTKKE----DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVS 123
           P + + TV   +  K      ++ V     V +A++ + EK I    V+D D  + G+V+
Sbjct: 2   PGSMSTTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVDGD-DIAGIVT 60

Query: 124 DYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHEN 183
           + D      +   +   T                           V ++MT     V  +
Sbjct: 61  ERDYARKVVLQERSSKATR--------------------------VEEIMTAKVRYVEPS 94

Query: 184 TNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQ 225
            + ++   L+ E + R LPV+DG GKL+GLI+ G++V++ + 
Sbjct: 95  QSTDECMALMTEHRMRHLPVLDG-GKLIGLISIGDLVKSVIA 135

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria} Length = 157

 Score = 51.9 bits (125), Expect = 1e-08
 Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 169 VGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIKR 228
                      V +N  + DA +L+ E     L VVDG   + G++T  +  R  +  +R
Sbjct: 15  AKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVDG-DDIAGIVTERDYARKVVLQER 73

Query: 229 D 229
            
Sbjct: 74  S 74

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 97.9 bits (244), Expect = 9e-25
 Identities = 40/151 (26%), Positives = 66/151 (43%), Gaps = 35/151 (23%)

Query: 75  VGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSIS 134
           V   MT+  +   +    T + ALE   + ++  FPV++ + KLVG++S   +L      
Sbjct: 3   VKTIMTQ--NPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRIL------ 54

Query: 135 GGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLL 194
                                         + + +  L+     VV EN  L+ AA+L+L
Sbjct: 55  ---------------------------VNPDEEQLAMLVKRDVPVVKENDTLKKAAKLML 87

Query: 195 ETKYRRLPVVDGYGKLVGLITRGNVVRAALQ 225
           E  YRR+ VVD  GK VG++T G+++R    
Sbjct: 88  EYDYRRVVVVDSKGKPVGILTVGDIIRRYFA 118

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 94.1 bits (234), Expect = 3e-23
 Identities = 33/153 (21%), Positives = 65/153 (42%), Gaps = 7/153 (4%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL----A 129
            +  +  +   +  V   T +  AL+ L+       PV+D +  LVG+V + DLL     
Sbjct: 127 EIEPYYQR--YVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEI 184

Query: 130 LDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDA 189
           +  +       +S    +  +  T    +  L   N  V  ++MT   +V   +  + + 
Sbjct: 185 VRIMKSTELAASSEEEWILESHPTLLFEKFELQLPNKPV-AEIMTRDVIVATPHMTVHEV 243

Query: 190 ARLLLETKYRRLPVVDGYGKLVGLITRGNVVRA 222
           A  + +    +LPV+ G G L+GLI   ++++ 
Sbjct: 244 ALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKV 276

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 84.5 bits (209), Expect = 1e-19
 Identities = 31/149 (20%), Positives = 57/149 (38%), Gaps = 28/149 (18%)

Query: 75  VGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSIS 134
           +   + +  D+  VK   T+ +A + ++E       V+D   K VG+++  D++      
Sbjct: 62  LAMLVKR--DVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRR---- 115

Query: 135 GGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLL 194
                                       K  G  +         +V E T L+ A + LL
Sbjct: 116 ----------------------YFAKSEKYKGVEIEPYYQRYVSIVWEGTPLKAALKALL 153

Query: 195 ETKYRRLPVVDGYGKLVGLITRGNVVRAA 223
            +    LPVVD  G LVG++   +++R +
Sbjct: 154 LSNSMALPVVDSEGNLVGIVDETDLLRDS 182

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 57.5 bits (139), Expect = 4e-10
 Identities = 17/59 (28%), Positives = 28/59 (47%)

Query: 169 VGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIK 227
           V  +MT  P+ +        A  L  + K R  PVV+  GKLVG+I+   ++    + +
Sbjct: 3   VKTIMTQNPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRILVNPDEEQ 61

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128

 Score = 92.5 bits (230), Expect = 3e-24
 Identities = 23/153 (15%), Positives = 45/153 (29%), Gaps = 31/153 (20%)

Query: 70  NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129
           N + T       + D        +  +A  RL        PV+D + + +G+V    LL 
Sbjct: 2   NASVTFSYLA--ETDYPVFTLGGSTADAARRLAASGCACAPVLDGE-RYLGMVHLSRLLE 58

Query: 130 LDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDA 189
                                             T  + +G+ +            L D 
Sbjct: 59  GRKGWP----------------------------TVKEKLGEELLETVRSYRPGEQLFDN 90

Query: 190 ARLLLETKYRRLPVVDGYGKLVGLITRGNVVRA 222
              +   K   +P+ D  G+  G+++R  ++  
Sbjct: 91  LISVAAAKCSVVPLADEDGRYEGVVSRKRILGF 123

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128

 Score = 47.8 bits (114), Expect = 2e-07
 Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 1/65 (1%)

Query: 168 VVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIK 227
               L      V     +  DAAR L  +     PV+DG  + +G++    ++       
Sbjct: 6   TFSYLAETDYPVFTLGGSTADAARRLAASGCACAPVLDG-ERYLGMVHLSRLLEGRKGWP 64

Query: 228 RDGER 232
              E+
Sbjct: 65  TVKEK 69

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} Length = 164

 Score = 91.2 bits (226), Expect = 3e-23
 Identities = 24/151 (15%), Positives = 49/151 (32%), Gaps = 22/151 (14%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDD--DWKLVGVVSDYDLLALD 131
            V  FM     +  +   T ++E ++ +    +T +P+++      LVG+V    L+   
Sbjct: 14  RVEHFMNH--SITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQAL 71

Query: 132 SISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAAR 191
                ++         +   +                      P  L +   T L  A  
Sbjct: 72  QAEPPSRAPGHQQCLQDILARGCP-----------------TEPVTLTLFSETTLHQAQN 114

Query: 192 LLLETKYRRLPVVDGYGKLVGLITRGNVVRA 222
           L      + L V    G+ VG ++   + +A
Sbjct: 115 LFKLLNLQSLFVTSR-GRAVGCVSWVEMKKA 144

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A Length = 141

 Score = 89.2 bits (222), Expect = 8e-23
 Identities = 24/151 (15%), Positives = 53/151 (35%), Gaps = 33/151 (21%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVI--DDDWKLVGVVSDYDLLALD 131
              + + +     ++  T T+ E    L + R+    +   D+  + V VVS+ D+L   
Sbjct: 6   RTSELLKR--PPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRA- 62

Query: 132 SISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAAR 191
            ++     D                               +   +P+ V +   +  AA 
Sbjct: 63  -VAQRLDLDG--------------------------PAMPIAN-SPITVLDTDPVHVAAE 94

Query: 192 LLLETKYRRLPVVDGYGKLVGLITRGNVVRA 222
            +     R + VV+  G+LVG+++  ++   
Sbjct: 95  KMRRHNIRHVVVVNKNGELVGVLSIRDLCFE 125

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 81.1 bits (200), Expect = 3e-18
 Identities = 25/146 (17%), Positives = 53/146 (36%), Gaps = 32/146 (21%)

Query: 83  EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTS 142
            +L      T V + ++ L EK I+  P+++ +  L+ V    D++ L            
Sbjct: 193 SNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHL--------IQDG 244

Query: 143 LFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAP------LVVHENTNLEDAARLLLET 196
            + N++ +                  VG+ +   P              L+     +  +
Sbjct: 245 DYSNLDLS------------------VGEALLKRPANFDGVHTCRATDRLDGIFDAIKHS 286

Query: 197 KYRRLPVVDGYGKLVGLITRGNVVRA 222
           +  RL VVD   KL G+++  +++  
Sbjct: 287 RVHRLFVVDENLKLEGILSLADILNY 312

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 59.5 bits (144), Expect = 1e-10
 Identities = 29/154 (18%), Positives = 60/154 (38%), Gaps = 14/154 (9%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVID-DDWKLVGVVSDYDLLALDS 132
           T  D +     L     T  V  +L  L    I   P+ D +  K  G+++  D + +  
Sbjct: 23  TSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIK 82

Query: 133 ISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARL 192
               + +       +        +  RLL     +     + P  + VH   +L DA   
Sbjct: 83  YYYQSSSFPEAIAEI--------DKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLA 134

Query: 193 LLETKYRRLPVVD-----GYGKLVGLITRGNVVR 221
           + +++ RR+P++D     G   +V ++T+  +++
Sbjct: 135 MSKSRARRIPLIDVDGETGSEMIVSVLTQYRILK 168

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 54.1 bits (130), Expect = 6e-09
 Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 4/59 (6%)

Query: 74  TVGDFMTKK----EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
           +VG+ + K+    + +H  + T  +D   + +   R+    V+D++ KL G++S  D+L
Sbjct: 252 SVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADIL 310

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 Length = 494

 Score = 77.1 bits (191), Expect = 1e-16
 Identities = 36/127 (28%), Positives = 59/127 (46%), Gaps = 34/127 (26%)

Query: 91  TTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNST 150
             TV EA++ + E +I G PV+D++ +LVG++++ D+                       
Sbjct: 111 DMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDV----------------------- 147

Query: 151 WKTFNELQRLLSKTNGKVVGDLMTP-APLV-VHENTNLEDAARLLLETKYRRLPVVDGYG 208
                   R     + K+  DLMTP   L+    + +LE A  +L + +  +LP+V    
Sbjct: 148 --------RFEKNLSKKI-KDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDN 198

Query: 209 KLVGLIT 215
           KLVGLIT
Sbjct: 199 KLVGLIT 205

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 Length = 494

 Score = 47.5 bits (114), Expect = 1e-06
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 11/68 (16%)

Query: 60  VGI-TNSVPPR------NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVI 112
           VG+ TN    R      N +  + D MT +E L       ++++A E L + RI   P++
Sbjct: 139 VGLLTN----RDVRFEKNLSKKIKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLV 194

Query: 113 DDDWKLVG 120
             D KLVG
Sbjct: 195 SKDNKLVG 202

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* Length = 511

 Score = 76.0 bits (188), Expect = 3e-16
 Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 35/128 (27%)

Query: 91  TTTVDEALERLVEKRITGFPVID--DDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVN 148
              V +A   + + RI+G PV++  D+ KLVG++++ D+                     
Sbjct: 129 EHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDM--------------------- 167

Query: 149 STWKTFNELQRLLSKTNGKVVGDLMTPAPLV-VHENTNLEDAARLLLETKYRRLPVVDGY 207
                     R +   + K+  D+MT   L+     T L +A ++L + K  +LP+VD  
Sbjct: 168 ----------RFIQDYSIKI-SDVMTKEQLITAPVGTTLSEAEKILQKYKIEKLPLVDNN 216

Query: 208 GKLVGLIT 215
           G L GLIT
Sbjct: 217 GVLQGLIT 224

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* Length = 511

 Score = 42.9 bits (102), Expect = 5e-05
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 12/68 (17%)

Query: 60  VGI-TNSVPPR------NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVI 112
           VGI TN    R      + +  + D MTK E L      TT+ EA + L + +I   P++
Sbjct: 159 VGIITN----RDMRFIQDYSIKISDVMTK-EQLITAPVGTTLSEAEKILQKYKIEKLPLV 213

Query: 113 DDDWKLVG 120
           D++  L G
Sbjct: 214 DNNGVLQG 221

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} Length = 496

 Score = 75.6 bits (187), Expect = 4e-16
 Identities = 24/127 (18%), Positives = 47/127 (37%), Gaps = 34/127 (26%)

Query: 91  TTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNST 150
             T+ + +E        GFPV+ ++ +LVG+++  D+                       
Sbjct: 105 EQTIADVMELTHYHGFAGFPVVTENNELVGIITGRDV----------------------- 141

Query: 151 WKTFNELQRLLSKTNGKVVGDLMTP-APLV-VHENTNLEDAARLLLETKYRRLPVVDGYG 208
                   R ++     V   +MTP   L  V E     +    + + +  ++ VV+   
Sbjct: 142 --------RFVTDLTKSV-AAVMTPKERLATVKEGATGAEVQEKMHKARVEKILVVNDEF 192

Query: 209 KLVGLIT 215
           +L G+IT
Sbjct: 193 QLKGMIT 199

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} Length = 496

 Score = 47.5 bits (114), Expect = 1e-06
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 11/68 (16%)

Query: 60  VGI-TNSVPPR------NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVI 112
           VGI T     R      + T +V   MT KE L  VK   T  E  E++ + R+    V+
Sbjct: 133 VGIITG----RDVRFVTDLTKSVAAVMTPKERLATVKEGATGAEVQEKMHKARVEKILVV 188

Query: 113 DDDWKLVG 120
           +D+++L G
Sbjct: 189 NDEFQLKG 196

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 Length = 491

 Score = 75.6 bits (187), Expect = 5e-16
 Identities = 37/128 (28%), Positives = 57/128 (44%), Gaps = 35/128 (27%)

Query: 91  TTTVDEALERLVEKRITGFPVIDD--DWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVN 148
              V EA E +   RI+G P+++   + KLVG++++ D+                     
Sbjct: 106 EHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDM--------------------- 144

Query: 149 STWKTFNELQRLLSKTNGKVVGDLMTPAPLV-VHENTNLEDAARLLLETKYRRLPVVDGY 207
                     R +S  N  +  + MT   LV     T+LE A R+L E +  +LP+VD  
Sbjct: 145 ----------RFISDYNAPI-SEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNS 193

Query: 208 GKLVGLIT 215
           G+L GLIT
Sbjct: 194 GRLSGLIT 201

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 Length = 491

 Score = 42.5 bits (101), Expect = 6e-05
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 12/68 (17%)

Query: 60  VGI-TNSVPPR------NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVI 112
           VGI TN    R      +    + + MT  E L      T ++ A   L E RI   P++
Sbjct: 136 VGIITN----RDMRFISDYNAPISEHMTS-EHLVTAAVGTDLETAERILHEHRIEKLPLV 190

Query: 113 DDDWKLVG 120
           D+  +L G
Sbjct: 191 DNSGRLSG 198

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae} Length = 632

 Score = 75.6 bits (186), Expect = 5e-16
 Identities = 29/177 (16%), Positives = 56/177 (31%), Gaps = 22/177 (12%)

Query: 67  PPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVE-KRITGFPVIDDDWKLVGVVSDY 125
             R+   T  + M   E    +   +        L +      FPVID +  L+G +S  
Sbjct: 447 RDRSPEMTAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDANGYLLGAISRK 506

Query: 126 DLL--------------------ALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTN 165
           +++                     L   +  ++N   L     S   +    +       
Sbjct: 507 EIVDRLQHVLEDVPEPIAGHRTLVLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEP 566

Query: 166 GKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRA 222
              +      +P+VV   + +     L +      + V +  GKLVG++ R +V   
Sbjct: 567 TSSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVTER-GKLVGIVEREDVAYG 622

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 Length = 486

 Score = 74.8 bits (185), Expect = 8e-16
 Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 35/125 (28%)

Query: 91  TTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNST 150
             TVD AL  + +  I G PV++D+ K+VG+++  D+                       
Sbjct: 109 DETVDFALFLMEKHGIDGLPVVEDE-KVVGIITKKDI----------------------- 144

Query: 151 WKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKL 210
                E +          V +LMT   + V E+  +E+A ++++E +  RLPVVD  GKL
Sbjct: 145 --AAREGKL---------VKELMTKEVITVPESIEVEEALKIMIENRIDRLPVVDERGKL 193

Query: 211 VGLIT 215
           VGLIT
Sbjct: 194 VGLIT 198

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 Length = 486

 Score = 41.7 bits (99), Expect = 1e-04
 Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 2/46 (4%)

Query: 75  VGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVG 120
           V + MTK  ++  V  +  V+EAL+ ++E RI   PV+D+  KLVG
Sbjct: 152 VKELMTK--EVITVPESIEVEEALKIMIENRIDRLPVVDERGKLVG 195

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* Length = 503

 Score = 73.0 bits (180), Expect = 3e-15
 Identities = 29/134 (21%), Positives = 45/134 (33%), Gaps = 36/134 (26%)

Query: 88  VKTTTTVDEALERLVEKRITGFPVIDDDW---KLVGVVSDYDLLALDSISGGNQNDTSLF 144
           VK   T  + L            V DD      L+G+V+  D                  
Sbjct: 110 VKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRDY----------------- 152

Query: 145 PNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAP-LV-VHENTNLEDAARLLLETKYRRLP 202
                          +        V D+MTP   LV  H++T L +A +++ E K   LP
Sbjct: 153 --------------PIDLTQTETKVSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALP 198

Query: 203 VVDGYGKLVGLITR 216
           ++D    L  ++ R
Sbjct: 199 IIDDDQHLRYIVFR 212

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* Length = 503

 Score = 51.0 bits (123), Expect = 8e-08
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 4/67 (5%)

Query: 60  VGI-TN---SVPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDD 115
           +G+ T     +        V D MT    L      T + EA + + EK++   P+IDDD
Sbjct: 144 LGLVTQRDYPIDLTQTETKVSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDD 203

Query: 116 WKLVGVV 122
             L  +V
Sbjct: 204 QHLRYIV 210

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* Length = 514

 Score = 73.0 bits (180), Expect = 4e-15
 Identities = 29/132 (21%), Positives = 54/132 (40%), Gaps = 37/132 (28%)

Query: 91  TTTVDEALERLVEKRITGFPVIDDDW---KLVGVVSDYDLLALDSISGGNQNDTSLFPNV 147
           + TV + LE  +    +G P+ +      KLVG+V+  D+                    
Sbjct: 124 SHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDI-------------------- 163

Query: 148 NSTWKTFNELQRLLSKTN-GKVVGDLMTP-APLV-VHENTNLEDAARLLLETKYRRLPVV 204
                        L++ +   ++ ++MTP   LV       L++A  +L  +K  +LP+V
Sbjct: 164 -----------DFLAEKDHTTLLSEVMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIV 212

Query: 205 DGYGKLVGLITR 216
           +   +LV +I R
Sbjct: 213 NDCDELVAIIAR 224

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* Length = 514

 Score = 50.6 bits (122), Expect = 1e-07
 Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 5/73 (6%)

Query: 60  VGI-TNS----VPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDD 114
           VGI T+     +  ++ T  + + MT + +L       T+ EA E L   +    P+++D
Sbjct: 155 VGIVTSRDIDFLAEKDHTTLLSEVMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVND 214

Query: 115 DWKLVGVVSDYDL 127
             +LV +++  DL
Sbjct: 215 CDELVAIIARTDL 227

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A Length = 473

 Score = 65.4 bits (160), Expect = 2e-12
 Identities = 38/149 (25%), Positives = 57/149 (38%), Gaps = 44/149 (29%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEK-----RITGFPVIDDDWKLVGVVSDYDLL 128
             G  MT   +  AV+   TV+E L  L         I    V+D+  +L GV+S     
Sbjct: 156 EAGGLMTP--EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLS----- 208

Query: 129 ALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLED 188
                                       L+ L+       V ++M P  + V  +T+ E+
Sbjct: 209 ----------------------------LRDLIVADPRTRVAEIMNPKVVYVRTDTDQEE 240

Query: 189 AARLLLETKYRRL--PVVDGYGKLVGLIT 215
            ARL+    Y     PVVD  G+LVG++T
Sbjct: 241 VARLM--ADYDFTVLPVVDEEGRLVGIVT 267

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A Length = 278

 Score = 63.8 bits (156), Expect = 2e-12
 Identities = 38/152 (25%), Positives = 58/152 (38%), Gaps = 48/152 (31%)

Query: 73  YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFP-------VIDDDWKLVGVVSDY 125
              G  MT   +  AV+   TV+E L  L  +R            V+D+  +L GV+S  
Sbjct: 135 DEAGGLMTP--EYVAVREGMTVEEVLRFL--RRAAPDAETIYYIYVVDEKGRLKGVLS-- 188

Query: 126 DLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTN 185
                                          L+ L+       V ++M P  + V  +T+
Sbjct: 189 -------------------------------LRDLIVADPRTRVAEIMNPKVVYVRTDTD 217

Query: 186 LEDAARLLLETKYRRL--PVVDGYGKLVGLIT 215
            E+ ARL+    Y     PVVD  G+LVG++T
Sbjct: 218 QEEVARLM--ADYDFTVLPVVDEEGRLVGIVT 247

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1} Length = 205

 Score = 62.6 bits (153), Expect = 3e-12
 Identities = 23/148 (15%), Positives = 44/148 (29%), Gaps = 42/148 (28%)

Query: 73  YTVGDFMTKKEDLHAVKTTTTVDEALERLVEK---RITGFPVIDDDWKLVGVVSDYDLLA 129
             +G +      +  +    TV +A                ++D+  K +G V       
Sbjct: 54  NEIGRYTDH--QMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEADKYLGTVR------ 105

Query: 130 LDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDA 189
                                         +      + +  L++     +  NT L DA
Sbjct: 106 ---------------------------RYDIFKHEPHEPLISLLSEDSRALTANTTLLDA 138

Query: 190 ARLLLETKYRRL--PVVDGYGKLVGLIT 215
           A  +     R +  PV+D  G+L+G +T
Sbjct: 139 AEAI--EHSREIELPVIDDAGELIGRVT 164

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1 Length = 286

 Score = 61.5 bits (150), Expect = 2e-11
 Identities = 32/152 (21%), Positives = 53/152 (34%), Gaps = 48/152 (31%)

Query: 73  YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFP-------VIDDDWKLVGVVSDY 125
            T G  MT   +  ++    TV  A+  L  K             V+D +  LVGV+S  
Sbjct: 137 ETAGAIMTT--EFVSIVANQTVRSAMYVL--KNQADMAETIYYVYVVDQENHLVGVIS-- 190

Query: 126 DLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTN 185
                                          L+ L+   +  ++ D++    + VH   +
Sbjct: 191 -------------------------------LRDLIVNDDDTLIADILNERVISVHVGDD 219

Query: 186 LEDAARLLLETKYRRL--PVVDGYGKLVGLIT 215
            ED A+ +    Y  L  PV D    L+G++T
Sbjct: 220 QEDVAQTI--RDYDFLAVPVTDYDDHLLGIVT 249

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A* Length = 149

 Score = 58.7 bits (143), Expect = 3e-11
 Identities = 31/154 (20%), Positives = 57/154 (37%), Gaps = 38/154 (24%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKR--ITGFPVIDDDWKLVGVVSDYDLLALD 131
            V D M   +++  V    T+ +AL  +  K   +T   + DDD  ++G+ +D D     
Sbjct: 29  RVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTA--ICDDDMNIIGIFTDGD----- 81

Query: 132 SISGGNQNDTSLFPNVNSTWKTFNELQRLLSKT---NGKVVGDLMTPAPLVVHENTNLED 188
                                    L+R+           + D+MT   + +   T   D
Sbjct: 82  -------------------------LRRVFDTGVDMRDASIADVMTRGGIRIRPGTLAVD 116

Query: 189 AARLLLETKYRRLPVVDGYGKLVGLITRGNVVRA 222
           A  L+       + V DG   L+G++   +++RA
Sbjct: 117 ALNLMQSRHITCVLVADG-DHLLGVVHMHDLLRA 149

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A* Length = 245

 Score = 55.3 bits (132), Expect = 2e-09
 Identities = 17/52 (32%), Positives = 33/52 (63%)

Query: 77  DFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
           D++  K++L AV T   V++    + E R + +PVID++ K+VG ++ + L+
Sbjct: 188 DYVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIARFHLI 239

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A* Length = 245

 Score = 54.2 bits (129), Expect = 4e-09
 Identities = 14/46 (30%), Positives = 24/46 (52%)

Query: 177 PLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRA 222
            + V  +  +ED    + ET+Y   PV+D   K+VG I R +++  
Sbjct: 196 LVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIARFHLIST 241

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A* Length = 245

 Score = 53.0 bits (126), Expect = 1e-08
 Identities = 23/144 (15%), Positives = 44/144 (30%), Gaps = 13/144 (9%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVV--SDYDLLALD 131
            V D       +  +    ++  A   + +K +   PV D +  L+G++  S+     +D
Sbjct: 8   KVEDLEMD--KIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITATYMD 65

Query: 132 SISGGNQNDTSLFPNVNSTWKTFNEL--QRLLSKTNGKVVGDLMTPAPLVVHEN------ 183
                    ++   +      +              GKVV   M    L    +      
Sbjct: 66  IWDSNILAKSATSLDNILDTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISEGDIAI 125

Query: 184 -TNLEDAARLLLETKYRRLPVVDG 206
             +  +    L+E K   L V  G
Sbjct: 126 AGDRAEIQAELIELKVSLLIVTGG 149

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A* Length = 245

 Score = 51.5 bits (122), Expect = 4e-08
 Identities = 13/66 (19%), Positives = 28/66 (42%)

Query: 169 VGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIKR 228
           V DL       +    +L+ A  ++ +   + +PV DG   L+G+++  N+    + I  
Sbjct: 9   VEDLEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITATYMDIWD 68

Query: 229 DGERST 234
               + 
Sbjct: 69  SNILAK 74

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis} Length = 173

 Score = 51.0 bits (123), Expect = 2e-08
 Identities = 29/146 (19%), Positives = 51/146 (34%), Gaps = 39/146 (26%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDW-KLVGVVSDYDLLALDS 132
           ++   MT + D+  V          ++L     + FPV      ++VG+    DL+A   
Sbjct: 37  SIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDLVA--- 93

Query: 133 ISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARL 192
                                          T G+V  + +   P++VHE+  +     L
Sbjct: 94  ----------------------------DLITEGRVRRNRLRD-PIIVHESIGILR---L 121

Query: 193 LLETKYRRLP---VVDGYGKLVGLIT 215
           +   K  R     V D +G + GL+T
Sbjct: 122 MDTLKRSRGQLVLVADEFGAIEGLVT 147

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis} Length = 172

 Score = 49.4 bits (119), Expect = 8e-08
 Identities = 30/146 (20%), Positives = 53/146 (36%), Gaps = 38/146 (26%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDW-KLVGVVSDYDLLALDS 132
           T+   M  + D+  +     +D  L  +++   + FPV  ++   +VG++S   LL+  S
Sbjct: 43  TISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLLSE-S 101

Query: 133 ISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARL 192
           I+G                                 + DL+      V  + +  +   L
Sbjct: 102 IAGERLE-----------------------------LVDLVKN-CNFVPNSLSGME---L 128

Query: 193 LLETKYRRLP---VVDGYGKLVGLIT 215
           L   +        VVD YG L GL+T
Sbjct: 129 LEHFRTTGSQMVFVVDEYGDLKGLVT 154

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A* Length = 527

 Score = 48.5 bits (116), Expect = 7e-07
 Identities = 25/140 (17%), Positives = 48/140 (34%), Gaps = 34/140 (24%)

Query: 82  KEDLHAVKTTTTVDEALERLVEKRITGFPVID-DDWKLVGVVSDYDLLALDSISGGNQND 140
                 +K+  TV EA+  + + R+   PV+D DD  ++GVV    L  +  I   N+  
Sbjct: 392 PAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETL--ITQIVSMNRQQ 449

Query: 141 TSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRR 200
           +                               +    + ++E+  L   AR+L       
Sbjct: 450 SDP-------------------------AIKALNKRVIRLNESEILGKLARVLEVDPS-- 482

Query: 201 LPVVDG----YGKLVGLITR 216
           + ++        +L  L T+
Sbjct: 483 VLILGKNPAGKVELKALATK 502

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni} Length = 153

 Score = 44.7 bits (107), Expect = 3e-06
 Identities = 31/147 (21%), Positives = 55/147 (37%), Gaps = 39/147 (26%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWK--LVGVVSDYDLLALD 131
              D M  +  +  V    T+ +AL   +E++ + FPV  D+ K  ++G   +YD++   
Sbjct: 21  VASDVMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIV--- 77

Query: 132 SISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAAR 191
                                      R     +   +  +M    + V EN  + D   
Sbjct: 78  ---------------------------RQARIDDKAKISTIMRD-IVSVPENMKVPD--- 106

Query: 192 LLLETKYRRLP---VVDGYGKLVGLIT 215
           ++ E    R+P   V+D YG   G+IT
Sbjct: 107 VMEEMSAHRVPMAIVIDEYGGTSGIIT 133

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae} Length = 136

 Score = 44.0 bits (105), Expect = 4e-06
 Identities = 35/146 (23%), Positives = 57/146 (39%), Gaps = 36/146 (24%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDW-KLVGVVSDYDLLALDS 132
            V D M  +  + ++K T T  E L  +++   + +PVI +    ++GV+   DLL L  
Sbjct: 4   QVRDIMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLIL 63

Query: 133 ISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARL 192
            + G+ +D                            V  L+ P    V E+  L     L
Sbjct: 64  KADGDSDD----------------------------VKKLLRP-ATFVPESKRLNV---L 91

Query: 193 LLETKYRRL---PVVDGYGKLVGLIT 215
           L E +        V+D YG + GL+T
Sbjct: 92  LREFRANHNHMAIVIDEYGGVAGLVT 117

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus} Length = 130

 Score = 43.6 bits (104), Expect = 5e-06
 Identities = 31/146 (21%), Positives = 52/146 (35%), Gaps = 37/146 (25%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDW-KLVGVVSDYDLLALDS 132
            V   MT +  +  V  T T++E L++  +   +   V  +    ++G V   +L  +  
Sbjct: 7   PVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQ 66

Query: 133 ISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARL 192
              G +                              +G +M P   VV  NT L     +
Sbjct: 67  SGSGQKQ-----------------------------LGAVMRP-IQVVLNNTALPK---V 93

Query: 193 LLETKYRRLP---VVDGYGKLVGLIT 215
             +    RL    VVD YG ++GL+T
Sbjct: 94  FDQMMTHRLQLALVVDEYGTVLGLVT 119

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis} Length = 129

 Score = 43.6 bits (104), Expect = 5e-06
 Identities = 30/146 (20%), Positives = 55/146 (37%), Gaps = 39/146 (26%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDW-KLVGVVSDYDLLALDS 132
           TV D M  +  +  +  +  + + L  ++E   + FPV +DD   ++G++   DLL    
Sbjct: 6   TVADIMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLL---- 61

Query: 133 ISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARL 192
                                     R + +     +  L+ P  + + E   L     L
Sbjct: 62  --------------------------RYMLEPALD-IRSLVRP-AVFIPEVKRLNV---L 90

Query: 193 LLETKYRRL---PVVDGYGKLVGLIT 215
           L E +  R     V+D +G + GL+T
Sbjct: 91  LREFRASRNHLAIVIDEHGGISGLVT 116

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium} Length = 127

 Score = 43.2 bits (103), Expect = 6e-06
 Identities = 34/146 (23%), Positives = 63/146 (43%), Gaps = 37/146 (25%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDW-KLVGVVSDYDLLALDS 132
            V D M  +  +  +K   T+DE L+ ++E   + FPVI +D   + G+     L+A D 
Sbjct: 4   RVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGI-----LMAKD- 57

Query: 133 ISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARL 192
                     L P + S  + F+             +  ++    +VV E+  ++    +
Sbjct: 58  ----------LLPFMRSDAEAFS-------------MDKVLRT-AVVVPESKRVDR---M 90

Query: 193 LLETKYRRL---PVVDGYGKLVGLIT 215
           L E + +R     V+D +G + GL+T
Sbjct: 91  LKEFRSQRYHMAIVIDEFGGVSGLVT 116

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630} Length = 148

 Score = 43.6 bits (104), Expect = 7e-06
 Identities = 24/146 (16%), Positives = 51/146 (34%), Gaps = 38/146 (26%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDW-KLVGVVSDYDLLALDS 132
            + + M  + D+  +  + + ++ L  L E+ +T +PV   +   ++G V   DL     
Sbjct: 24  KIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKNKDDILGFVHIRDLY---- 79

Query: 133 ISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARL 192
                                           N   + +++    + + EN  ++     
Sbjct: 80  --------------------------NQKINENKIELEEILRD-IIYISENLTIDK---A 109

Query: 193 LLETKYRRLP---VVDGYGKLVGLIT 215
           L   +  +L    VVD YG   G++T
Sbjct: 110 LERIRKEKLQLAIVVDEYGGTSGVVT 135

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B} Length = 156

 Score = 43.6 bits (104), Expect = 9e-06
 Identities = 28/146 (19%), Positives = 56/146 (38%), Gaps = 38/146 (26%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDW-KLVGVVSDYDLLALDS 132
            V D M  +  ++ +K   +++     +++   + FPVI +D  +++G++   DLL    
Sbjct: 39  EVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLL---- 94

Query: 133 ISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARL 192
                                     + +       +  ++ P  + V E  +L     L
Sbjct: 95  --------------------------KYMFNPEQFHLKSILRP-AVFVPEGKSLTA---L 124

Query: 193 LLETKYRRLP---VVDGYGKLVGLIT 215
           L E + +R     V+D YG   GL+T
Sbjct: 125 LKEFREQRNHMAIVIDEYGGTSGLVT 150

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp} Length = 130

 Score = 42.8 bits (102), Expect = 1e-05
 Identities = 21/146 (14%), Positives = 43/146 (29%), Gaps = 35/146 (23%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDW-KLVGVVSDYDLLALDS 132
           +V D M  + ++  +         + +L         +  D     + ++   +   L  
Sbjct: 3   SVNDIMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRL-- 60

Query: 133 ISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARL 192
                     +      T +    + R   +                V E T L      
Sbjct: 61  ----------MTEKKEFTKEI---MLRAADE-------------IYFVPEGTPLST---Q 91

Query: 193 LLETKYRRL---PVVDGYGKLVGLIT 215
           L++ +  +     VVD YG + GL+T
Sbjct: 92  LVKFQRNKKKVGLVVDEYGDIQGLVT 117

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1 Length = 250

 Score = 42.8 bits (99), Expect = 4e-05
 Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 173 MTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRA 222
           +  +P  + E T+L+    L       R  V    GKLVG++    +  A
Sbjct: 195 IDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS-MGKLVGVVALAEIQAA 243

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	234
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.91
4esy_A	170	CBS domain containing membrane protein; structural	99.9
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.89
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.89
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.89
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.88
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.88
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.88
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.88
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.88
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.88
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.88
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.87
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.87
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	99.87
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	99.87
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.87
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.87
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	99.86
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	99.86
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.86
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	99.86
1pbj_A	125	Hypothetical protein; structural genomics, domain,	99.85
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	99.85
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	99.85
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.85
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	99.85
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	99.84
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	99.84
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	99.84
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.84
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.84
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	99.83
4fry_A	157	Putative signal-transduction protein with CBS DOM;	99.83
1pvm_A	184	Conserved hypothetical protein TA0289; structural	99.83
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	99.83
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	99.83
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.83
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	99.82
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	99.82
2oux_A	286	Magnesium transporter; 10001B, structural genomics	99.82
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	99.81
3ddj_A	296	CBS domain-containing protein; structural genomics	99.8
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	99.79
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.79
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	99.78
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.77
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.76
3ddj_A	296	CBS domain-containing protein; structural genomics	99.76
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	99.76
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.75
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.74
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	99.74
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.72
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	99.72
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.71
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	99.67
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.67
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.65
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	99.65
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	99.62
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.58
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	99.58
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.56
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	99.56
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.52
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	99.45
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	99.42
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	99.3
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.27
3fio_A	70	A cystathionine beta-synthase domain protein fused	99.05
4esy_A	170	CBS domain containing membrane protein; structural	99.0
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	98.89
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	98.88
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	98.86
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	98.85
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	98.82
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	98.8
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	98.79
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	98.78
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	98.78
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	98.76
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	98.76
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	98.75
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	98.75
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	98.75
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	98.73
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	98.73
3fio_A	70	A cystathionine beta-synthase domain protein fused	98.72
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	98.72
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	98.72
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	98.71
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	98.69
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	98.69
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	98.69
1pbj_A	125	Hypothetical protein; structural genomics, domain,	98.69
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	98.68
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	98.68
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	98.67
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	98.67
3oco_A	153	Hemolysin-like protein containing CBS domains; str	98.67
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	98.66
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	98.65
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	98.64
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	98.63
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	98.63
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	98.63
3ocm_A	173	Putative membrane protein; structural genomics, PS	98.63
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	98.62
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	98.62
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	98.61
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	98.6
4fry_A	157	Putative signal-transduction protein with CBS DOM;	98.59
1pvm_A	184	Conserved hypothetical protein TA0289; structural	98.58
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	98.55
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	98.54
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	98.5
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	98.43
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	98.39
2oux_A	286	Magnesium transporter; 10001B, structural genomics	98.38
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	98.36
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	98.36
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	98.26
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	98.13
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	98.07
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	98.04
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	98.0
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	97.86

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.91  E-value=3.7e-24  Score=166.12  Aligned_cols=159  Identities=77%  Similarity=1.199  Sum_probs=128.4

Q ss_pred             ccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchh
Q 026712           72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTW  151 (234)
Q Consensus        72 ~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~  151 (234)
                      .++|+++|.+..++.++.+++++.+|+++|.+++++.+||+|++|+++|+|+.+|+.+.....+.......++......|
T Consensus         3 ~~~v~dim~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~   82 (180)
T 3sl7_A            3 GYTVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDSTW   82 (180)
T ss_dssp             CCBHHHHSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHTCC-------------------CC
T ss_pred             ceeHHHhcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECCCCeEEEEEEHHHHHhhhhhccccCCcccccccccchh
Confidence            46899999875468899999999999999999999999999999999999999999976544444444444556667888


Q ss_pred             hhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHhhhhC
Q 026712          152 KTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIKRDG  230 (234)
Q Consensus       152 ~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~~~~~  230 (234)
                      ..|...+.........++.++|.++++++.+++++.+|++.|.+++++++||+|++|+++|+||..||++++.+...+.
T Consensus        83 ~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dil~~~~~~~~~~  161 (180)
T 3sl7_A           83 KTFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVRAALQIKRNA  161 (180)
T ss_dssp             CSHHHHHHHHHTTTTCBHHHHSEESCCCEETTSBHHHHHHHHTTSTTCEEEEECTTCBEEEEEEHHHHHHHHHHHHHTC
T ss_pred             hhhHHHHHHHhccccccHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHHHHhhhh
Confidence            8888888887777889999999999999999999999999999999999999998899999999999999998876543

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.90  E-value=1.1e-23  Score=162.71  Aligned_cols=149  Identities=21%  Similarity=0.296  Sum_probs=119.0

Q ss_pred             CccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccch
Q 026712           71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNST  150 (234)
Q Consensus        71 ~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~  150 (234)
                      ..++|+++|++  +++++.+++++.+|++.|.+++++.+||+|++|+++|+||.+|+++............     ....
T Consensus        16 ~~~~V~diM~~--~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dll~~~~~~~~~~~~~-----~~~~   88 (170)
T 4esy_A           16 RQVPIRDILTS--PVVTVREDDTLDAVAKTMLEHQIGCAPVVDQNGHLVGIITESDFLRGSIPFWIYEASE-----ILSR   88 (170)
T ss_dssp             HTSBGGGGCCS--CCCCEETTSBHHHHHHHHHHTTCSEEEEECTTSCEEEEEEGGGGGGGTCCTTHHHHHH-----HHTT
T ss_pred             cCCCHHHhcCC--CCcEECCcCcHHHHHHHHHHcCCeEEEEEcCCccEEEEEEHHHHHHHHhhccccchhh-----hhhh
Confidence            36789999998  8999999999999999999999999999999999999999999987632111000000     0000


Q ss_pred             hhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHhh
Q 026712          151 WKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIK  227 (234)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~~  227 (234)
                      .................++.++|+++++++.+++++.+|+++|.+++++++||+| +|+++|+||++||++++.+..
T Consensus        89 ~~~~~~~~~~~~~~~~~~v~~im~~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd-~g~lvGivt~~Dil~~l~~~~  164 (170)
T 4esy_A           89 AIPAPEVEHLFETGRKLTASAVMTQPVVTAAPEDSVGSIADQMRRHGIHRIPVVQ-DGVPVGIVTRRDLLKLLLLEE  164 (170)
T ss_dssp             TSCHHHHHHHHHHHTTCBHHHHCBCCSCCBCTTSBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHTTTSCCC-
T ss_pred             ccchhhHHhhhccccccchhhhcccCcccCCcchhHHHHHHHHHHcCCcEEEEEE-CCEEEEEEEHHHHHHHHHhcc
Confidence            0011223444455667899999999999999999999999999999999999999 699999999999999886553

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.89  E-value=6.7e-23  Score=154.48  Aligned_cols=148  Identities=84%  Similarity=1.248  Sum_probs=117.0

Q ss_pred             CccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccch
Q 026712           71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNST  150 (234)
Q Consensus        71 ~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~  150 (234)
                      +..+++++|.+..++.++++++++.+|++.|.+++++.+||+|++|+++|+|+.+|+.+....              ...
T Consensus         3 ~~~~v~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~--------------~~~   68 (152)
T 4gqw_A            3 GVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLALDSG--------------DST   68 (152)
T ss_dssp             CCSBGGGTSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHTTCC------------------C
T ss_pred             ceEEhhhccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeCCCeEEEEEEHHHHHHhhcc--------------cCc
Confidence            367899999875568999999999999999999999999999998999999999999865321              122


Q ss_pred             hhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHhhhhC
Q 026712          151 WKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIKRDG  230 (234)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~~~~~  230 (234)
                      |..+.............++.++|.++++++.+++++.++++.|.+++.+++||+|++|+++|+||..||++++.+...+.
T Consensus        69 ~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Giit~~dil~~~~~~~~~~  148 (152)
T 4gqw_A           69 WKTFNAVQKLLSKTNGKLVGDLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVVRAALQIKRSG  148 (152)
T ss_dssp             CHHHHHHHTC-----CCBHHHHSEESCCCEESSSBHHHHHHHHHHSSCCEEEEECTTSBEEEEEEHHHHHHHHHC-----
T ss_pred             ccchHHHHHHHHHhccccHHHhcCCCceEECCCCcHHHHHHHHHHCCCCEEEEECCCCcEEEEEEHHHHHHHHHhccccc
Confidence            33333333333345568899999999999999999999999999999999999998899999999999999999877665


Q ss_pred             CC
Q 026712          231 ER  232 (234)
Q Consensus       231 ~~  232 (234)
                      ++
T Consensus       149 ~~  150 (152)
T 4gqw_A          149 DR  150 (152)
T ss_dssp             --
T ss_pred             cC
Confidence            44

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.89  E-value=1.5e-22  Score=154.38  Aligned_cols=131  Identities=23%  Similarity=0.318  Sum_probs=112.4

Q ss_pred             ccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhh
Q 026712           74 TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKT  153 (234)
Q Consensus        74 ~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (234)
                      +++++|.|..++.++.+++++.+|+++|.+++++++||+|++|+++|+||.+|+.++.......                
T Consensus        16 ~~~~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~~~lvGiit~~Di~~~~~~~~~~----------------   79 (156)
T 3k6e_A           16 QEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQMEHDLS----------------   79 (156)
T ss_dssp             TGGGGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC-CBEEEEEEHHHHHHHHHHHTCC----------------
T ss_pred             cHHHhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEecchhhhhhhcccc----------------
Confidence            6889999888999999999999999999999999999999989999999999998764221110                


Q ss_pred             hHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHhhhh
Q 026712          154 FNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIKRD  229 (234)
Q Consensus       154 ~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~~~~  229 (234)
                             .......++.++|.++++++.+++++.+|++.|.+++  .+||||++|+++|+||++||++++.+...+
T Consensus        80 -------~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~--~lpVVd~~g~l~GiiT~~Dil~~~~~~~~~  146 (156)
T 3k6e_A           80 -------QEIMADTDIVHMTKTDVAVVSPDFTITEVLHKLVDES--FLPVVDAEGIFQGIITRKSILKAVNALLHD  146 (156)
T ss_dssp             -------HHHHTTSBGGGTCBCSCCCBCTTCCHHHHHHHTTTSS--EEEEECTTSBEEEEEEHHHHHHHHHHHSCC
T ss_pred             -------cccccccCHHHhhcCCceecccccHHHHHHHHHHHcC--CeEEEecCCEEEEEEEHHHHHHHHHHHhcc
Confidence                   0123467899999999999999999999999998776  499999999999999999999999776543

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.89  E-value=7.9e-22  Score=148.61  Aligned_cols=126  Identities=19%  Similarity=0.308  Sum_probs=113.2

Q ss_pred             cCccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCC-CcEEEEEehHHHhhhhccCCCCCCCCCCCCCcc
Q 026712           70 NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDD-WKLVGVVSDYDLLALDSISGGNQNDTSLFPNVN  148 (234)
Q Consensus        70 ~~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~  148 (234)
                      +...+|+++|.+..++.++++++++.+|++.|.+++++.+||+|++ |+++|+||.+|+.+...                
T Consensus        20 l~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~----------------   83 (148)
T 3lv9_A           20 FEEKKIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYNQKI----------------   83 (148)
T ss_dssp             GGTCBGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHHHHH----------------
T ss_pred             cCCCCHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHh----------------
Confidence            3477899999975578999999999999999999999999999988 89999999999987521                


Q ss_pred             chhhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHh
Q 026712          149 STWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQI  226 (234)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~  226 (234)
                                    .....++.++| ++++++.+++++.+|++.|.+++.+.+||+|++|+++|+||..|+++.+...
T Consensus        84 --------------~~~~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~~~  146 (148)
T 3lv9_A           84 --------------NENKIELEEIL-RDIIYISENLTIDKALERIRKEKLQLAIVVDEYGGTSGVVTIEDILEEIVGE  146 (148)
T ss_dssp             --------------HHSCCCGGGTC-BCCEEEETTSBHHHHHHHHHHHTCSEEEEECTTSSEEEEEEHHHHHHHHHHT
T ss_pred             --------------cCCCccHHHhc-CCCeEECCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhCc
Confidence                          11267899999 8899999999999999999999999999999889999999999999998753

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.88  E-value=4.9e-22  Score=146.48  Aligned_cols=123  Identities=22%  Similarity=0.346  Sum_probs=109.2

Q ss_pred             ccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCC-CcEEEEEehHHHhhhhccCCCCCCCCCCCCCccch
Q 026712           72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDD-WKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNST  150 (234)
Q Consensus        72 ~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~  150 (234)
                      ..+|+++|.+..++.++++++++.+|++.|.+++++.+||+|++ |+++|+||.+|+.+...                  
T Consensus         4 ~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~------------------   65 (129)
T 3jtf_A            4 ERTVADIMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYML------------------   65 (129)
T ss_dssp             CCBHHHHCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGGGGT------------------
T ss_pred             CCCHHHhCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHhHhc------------------
Confidence            66899999954378999999999999999999999999999986 89999999999987531                  


Q ss_pred             hhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHh
Q 026712          151 WKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQI  226 (234)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~  226 (234)
                                   ....++.++|.+ ++++.+++++.+|++.|.+++.+.+||+|++|+++|+||..|+++.+...
T Consensus        66 -------------~~~~~v~~~m~~-~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~g~~~Giit~~Dil~~l~ge  127 (129)
T 3jtf_A           66 -------------EPALDIRSLVRP-AVFIPEVKRLNVLLREFRASRNHLAIVIDEHGGISGLVTMEDVLEQIVGD  127 (129)
T ss_dssp             -------------CTTSCGGGGCBC-CCEEETTCBHHHHHHHHHTSSCCEEEEECC-CCEEEEEEHHHHHHHHHHT
T ss_pred             -------------cCCcCHHHHhCC-CeEeCCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhCC
Confidence                         234679999965 88999999999999999999999999999889999999999999998754

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.88  E-value=7.7e-22  Score=152.65  Aligned_cols=129  Identities=21%  Similarity=0.244  Sum_probs=111.9

Q ss_pred             cCccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCC-CcEEEEEehHHHhhhhccCCCCCCCCCCCCCcc
Q 026712           70 NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDD-WKLVGVVSDYDLLALDSISGGNQNDTSLFPNVN  148 (234)
Q Consensus        70 ~~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~  148 (234)
                      +...+|+++|.+..++.++++++++.+|+++|.+++++.+||+|++ ++++|+||.+|+.+...                
T Consensus        39 l~~~~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~----------------  102 (172)
T 3lhh_A           39 LDERTISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLLSESI----------------  102 (172)
T ss_dssp             ----CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESSSTTSEEEEEEHHHHHHHHH----------------
T ss_pred             cCCCCHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEEHHHHHHHHh----------------
Confidence            4577899999943378999999999999999999999999999987 89999999999987531                


Q ss_pred             chhhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHhhh
Q 026712          149 STWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIKR  228 (234)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~~~  228 (234)
                                    .....++.++| ++++++.+++++.+|++.|.+++.+.+||+|++|+++|+||..|+++.+.....
T Consensus       103 --------------~~~~~~v~~im-~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dil~~l~~~~~  167 (172)
T 3lhh_A          103 --------------AGERLELVDLV-KNCNFVPNSLSGMELLEHFRTTGSQMVFVVDEYGDLKGLVTLQDMMDALTGEFF  167 (172)
T ss_dssp             --------------TTCCCCGGGGC-BCCEEEETTCCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHTTCC
T ss_pred             --------------hcCcccHHHHh-cCCeEeCCCCCHHHHHHHHHHcCCeEEEEEeCCCCEEEEeeHHHHHHHHhCCCc
Confidence                          12357899999 889999999999999999999999999999988999999999999999986544


Q ss_pred             h
Q 026712          229 D  229 (234)
Q Consensus       229 ~  229 (234)
                      .
T Consensus       168 d  168 (172)
T 3lhh_A          168 Q  168 (172)
T ss_dssp             -
T ss_pred             c
Confidence            3

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.88  E-value=3.5e-22  Score=145.37  Aligned_cols=121  Identities=25%  Similarity=0.439  Sum_probs=109.4

Q ss_pred             cccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhh
Q 026712           73 YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWK  152 (234)
Q Consensus        73 ~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~  152 (234)
                      ++|+++|.+  ++.++++++++.+|++.|.+++.+.+||+|++|+++|+|+.+|+.+.+.                    
T Consensus         1 ~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~--------------------   58 (122)
T 3kpb_A            1 TLVKDILSK--PPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALA--------------------   58 (122)
T ss_dssp             CBHHHHCCS--CCCCEETTSBHHHHHHHHHHHTCSCEEEECTTSBEEEEECHHHHHHHHH--------------------
T ss_pred             CchHHhhCC--CCEEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHHHHHH--------------------
Confidence            368999998  8999999999999999999999999999999999999999999987531                    


Q ss_pred             hhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHh
Q 026712          153 TFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQI  226 (234)
Q Consensus       153 ~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~  226 (234)
                                 ....++.++|.++++++.+++++.++++.|.+++.+++||+|++|+++|+||..|+++++.+.
T Consensus        59 -----------~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Givt~~dl~~~l~~~  121 (122)
T 3kpb_A           59 -----------QNKKTIEEIMTRNVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDISRLFGGK  121 (122)
T ss_dssp             -----------TTCCBGGGTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHC--
T ss_pred             -----------hcccCHHHHhcCCCeEECCCCCHHHHHHHHHHhCCCeEEEECCCCCEEEEEeHHHHHHHhhcC
Confidence                       223589999999999999999999999999999999999999889999999999999987653

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.88  E-value=2.4e-22  Score=149.50  Aligned_cols=128  Identities=25%  Similarity=0.355  Sum_probs=108.7

Q ss_pred             ccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCC-CcEEEEEehHHHhhhhccCCCCCCCCCCCCCccch
Q 026712           72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDD-WKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNST  150 (234)
Q Consensus        72 ~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~  150 (234)
                      ..+|+++|.+..++.++.+++++.+|++.|.+++++.+||+|++ |+++|+||.+|+++.+...                
T Consensus         2 ~~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~----------------   65 (136)
T 3lfr_A            2 DLQVRDIMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLILKA----------------   65 (136)
T ss_dssp             -CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGGSS----------------
T ss_pred             CCChHhccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHhc----------------
Confidence            46799999954378999999999999999999999999999987 7999999999999864210                


Q ss_pred             hhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHhhh
Q 026712          151 WKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIKR  228 (234)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~~~  228 (234)
                                  .....++.++|.+ ++++.+++++.+|++.|.+++.+.+||+|++|+++|+||..|+++.+.....
T Consensus        66 ------------~~~~~~v~~~m~~-~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~~~~~  130 (136)
T 3lfr_A           66 ------------DGDSDDVKKLLRP-ATFVPESKRLNVLLREFRANHNHMAIVIDEYGGVAGLVTIEDVLEQIVGDIE  130 (136)
T ss_dssp             ------------SGGGCCGGGTCBC-CCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHTTC-----
T ss_pred             ------------cCCCcCHHHHcCC-CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhCCCc
Confidence                        1234689999976 8999999999999999999999999999988999999999999998875443

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.88  E-value=3.4e-22  Score=147.43  Aligned_cols=125  Identities=22%  Similarity=0.344  Sum_probs=108.4

Q ss_pred             CccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCC-CcEEEEEehHHHhhhhccCCCCCCCCCCCCCccc
Q 026712           71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDD-WKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNS  149 (234)
Q Consensus        71 ~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~  149 (234)
                      ...+|+++|.+..++.++++++++.+|++.|.+++++.+||+|++ |+++|+||.+|+.+....                
T Consensus         4 ~~~~v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~----------------   67 (130)
T 3i8n_A            4 QDVPVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQS----------------   67 (130)
T ss_dssp             ---CCTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHHT----------------
T ss_pred             CcCCHhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHhc----------------
Confidence            467899999964467789999999999999999999999999987 899999999999876321                


Q ss_pred             hhhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHH
Q 026712          150 TWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQ  225 (234)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~  225 (234)
                                   .....++.++|. +++++.+++++.+|++.|.+++.+.+||+|++|+++|+||..|+++.+..
T Consensus        68 -------------~~~~~~v~~~m~-~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~vGivt~~dil~~l~g  129 (130)
T 3i8n_A           68 -------------GSGQKQLGAVMR-PIQVVLNNTALPKVFDQMMTHRLQLALVVDEYGTVLGLVTLEDIFEHLVG  129 (130)
T ss_dssp             -------------TTTTSBHHHHSE-ECCEEETTSCHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHHHT
T ss_pred             -------------CCCcCCHHHHhc-CCcCcCCCCcHHHHHHHHHHcCCeEEEEEcCCCCEEEEEEHHHHHHHHcC
Confidence                         123578999995 58899999999999999999999999999988999999999999998864

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.88  E-value=6.3e-22  Score=145.56  Aligned_cols=125  Identities=18%  Similarity=0.185  Sum_probs=112.0

Q ss_pred             CccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccch
Q 026712           71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNST  150 (234)
Q Consensus        71 ~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~  150 (234)
                      ...+++++|.+  ++.++++++++.+|++.|.+++.+.+||+|+ |+++|+|+.+|+.+......               
T Consensus         3 ~s~~v~~~m~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~Givt~~dl~~~~~~~~---------------   64 (128)
T 3gby_A            3 ASVTFSYLAET--DYPVFTLGGSTADAARRLAASGCACAPVLDG-ERYLGMVHLSRLLEGRKGWP---------------   64 (128)
T ss_dssp             TTCBGGGGCBC--CSCCEETTSBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHTTCSSSC---------------
T ss_pred             cceEHHHhhcC--CcceECCCCCHHHHHHHHHHCCCcEEEEEEC-CEEEEEEEHHHHHHHHhhCC---------------
Confidence            36789999998  8999999999999999999999999999998 99999999999997532110               


Q ss_pred             hhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHh
Q 026712          151 WKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQI  226 (234)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~  226 (234)
                                   ....++.++|.+++.++.+++++.++++.|.+++.+++||+|++|+++|+||..|+++.+.+.
T Consensus        65 -------------~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~g~~~Giit~~dll~~l~~~  127 (128)
T 3gby_A           65 -------------TVKEKLGEELLETVRSYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGVVSRKRILGFLAER  127 (128)
T ss_dssp             -------------CTTCBCCGGGCBCCCCBCTTSBGGGSHHHHHHCSSSEEEEECTTCBEEEEEEHHHHHHHHHTT
T ss_pred             -------------cccCcHHHHccCCCcEECCCCCHHHHHHHHHhCCCcEEEEECCCCCEEEEEEHHHHHHHHHhh
Confidence                         122679999999999999999999999999999999999999899999999999999998764

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.88  E-value=4.3e-22  Score=147.09  Aligned_cols=126  Identities=15%  Similarity=0.163  Sum_probs=107.9

Q ss_pred             cccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcC-CCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchh
Q 026712           73 YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDD-DWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTW  151 (234)
Q Consensus        73 ~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~-~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~  151 (234)
                      .+|+++|.+..++.++++++++.+|++.|.+++++.+||+++ +|+++|+||.+|+.+.......               
T Consensus         2 ~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~~~~~---------------   66 (130)
T 3hf7_A            2 VSVNDIMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKE---------------   66 (130)
T ss_dssp             CBHHHHSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHTSSSC---------------
T ss_pred             cCHHHhCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHhccCc---------------
Confidence            578999975447899999999999999999999999999975 5899999999999986421110               


Q ss_pred             hhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHh
Q 026712          152 KTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQI  226 (234)
Q Consensus       152 ~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~  226 (234)
                                  ....++.++| ++++++.+++++.++++.|.+++.+.+||+|++|+++|+||..|+++.+...
T Consensus        67 ------------~~~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~g~  128 (130)
T 3hf7_A           67 ------------FTKEIMLRAA-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVGD  128 (130)
T ss_dssp             ------------CCHHHHHHHS-BCCCEEETTCBHHHHHHHHHHHCCCEEEEECTTSCEEEEEEHHHHHHHHHC-
T ss_pred             ------------cchhhHHHhc-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEcCCCCEEEEeeHHHHHHHHhCC
Confidence                        1124688888 6689999999999999999999999999999889999999999999998753

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.87  E-value=7.5e-22  Score=145.02  Aligned_cols=124  Identities=23%  Similarity=0.418  Sum_probs=107.8

Q ss_pred             ccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCC-CcEEEEEehHHHhhhhccCCCCCCCCCCCCCccch
Q 026712           72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDD-WKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNST  150 (234)
Q Consensus        72 ~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~  150 (234)
                      ..+++++|.+..++.++++++++.+|++.|.+++++.+||+|++ |+++|+||.+|+.+.+..                 
T Consensus         2 ~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~-----------------   64 (127)
T 3nqr_A            2 DQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRS-----------------   64 (127)
T ss_dssp             -CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGST-----------------
T ss_pred             CcCHHHhcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhc-----------------
Confidence            46799999963358999999999999999999999999999988 899999999999976321                 


Q ss_pred             hhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHH
Q 026712          151 WKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQ  225 (234)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~  225 (234)
                                  .....++.++|.+ ++++.+++++.++++.|.+++.+++||+|++|+++|+||..|+++.+..
T Consensus        65 ------------~~~~~~v~~~m~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Giit~~dll~~l~g  126 (127)
T 3nqr_A           65 ------------DAEAFSMDKVLRT-AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVG  126 (127)
T ss_dssp             ------------TCCCCCHHHHCBC-CCEEETTCBHHHHHHHHHHTTCCEEEEECTTSCEEEEEEHHHHHHHC--
T ss_pred             ------------cCCCCCHHHHcCC-CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhC
Confidence                        1235689999965 7899999999999999999999999999988999999999999998753

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.87  E-value=1.3e-21  Score=147.54  Aligned_cols=137  Identities=20%  Similarity=0.250  Sum_probs=114.6

Q ss_pred             cCccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccc
Q 026712           70 NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNS  149 (234)
Q Consensus        70 ~~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~  149 (234)
                      +...+|+++|.+..++.++++++++.+|++.|.+++++.+||+|++|+++|+||.+|+.+.+.......           
T Consensus        12 l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~-----------   80 (150)
T 3lqn_A           12 FQQIFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMILDGILGLERIE-----------   80 (150)
T ss_dssp             HHHCBHHHHSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHTBCSSSBC-----------
T ss_pred             hhcCChhhcccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECCCCCEEEEEEHHHHHHHHHhhcccc-----------
Confidence            346789999996336899999999999999999999999999999999999999999998643211100           


Q ss_pred             hhhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHhhhh
Q 026712          150 TWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIKRD  229 (234)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~~~~  229 (234)
                                 .......++.++|.++++++.+++++.+|++.|.++++  +||+|++|+++|+||..||++++.+...+
T Consensus        81 -----------~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~~g~~~Giit~~dil~~l~~~~~~  147 (150)
T 3lqn_A           81 -----------FERLEEMKVEQVMKQDIPVLKLEDSFAKALEMTIDHPF--ICAVNEDGYFEGILTRRAILKLLNKKVRQ  147 (150)
T ss_dssp             -----------GGGGGGCBGGGTCBSSCCEEETTCBHHHHHHHHHHCSE--EEEECTTCBEEEEEEHHHHHHHHHHHC--
T ss_pred             -----------hhHHhcCCHHHHhcCCCceeCCCCCHHHHHHHHHhCCE--EEEECCCCcEEEEEEHHHHHHHHHHHhHh
Confidence                       01124578999999999999999999999999999987  99999889999999999999999987654


Q ss_pred             C
Q 026712          230 G  230 (234)
Q Consensus       230 ~  230 (234)
                      .
T Consensus       148 ~  148 (150)
T 3lqn_A          148 H  148 (150)
T ss_dssp             -
T ss_pred             h
Confidence            3

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=99.87  E-value=2.4e-21  Score=143.11  Aligned_cols=127  Identities=23%  Similarity=0.376  Sum_probs=112.6

Q ss_pred             ccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchh
Q 026712           72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTW  151 (234)
Q Consensus        72 ~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~  151 (234)
                      ..+++++|.+  ++.++++++++.+|.+.|.+++.+.+||+| +|+++|+|+.+|+.+.+....                
T Consensus         3 ~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~Givt~~dl~~~~~~~~----------------   63 (133)
T 2ef7_A            3 EEIVKEYMKT--QVISVTKDAKLNDIAKVMTEKNIGSVIVVD-GNKPVGIITERDIVKAIGKGK----------------   63 (133)
T ss_dssp             CCBGGGTSBC--SCCEEETTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTTC----------------
T ss_pred             cccHHHhccC--CCEEECCCCcHHHHHHHHHhcCCCEEEEEE-CCEEEEEEcHHHHHHHHhcCC----------------
Confidence            5689999998  799999999999999999999999999999 899999999999987532111                


Q ss_pred             hhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHhhhh
Q 026712          152 KTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIKRD  229 (234)
Q Consensus       152 ~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~~~~  229 (234)
                                  ....++.++|.+++.++.+++++.++++.|.+++.+++||+|++|+++|+||..|+++.+.+...+
T Consensus        64 ------------~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~~~~~  129 (133)
T 2ef7_A           64 ------------SLETKAEEFMTASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDDMFET  129 (133)
T ss_dssp             ------------CTTCBGGGTSEECCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHC--
T ss_pred             ------------CcccCHHHHcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHHHHHHH
Confidence                        234789999998999999999999999999999999999999889999999999999999877553

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=99.87  E-value=2.1e-21  Score=148.18  Aligned_cols=133  Identities=23%  Similarity=0.288  Sum_probs=116.5

Q ss_pred             cCccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccc
Q 026712           70 NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNS  149 (234)
Q Consensus        70 ~~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~  149 (234)
                      +..++|+++|.+  . +++.+++++.+|++.|.+.+++.+||+|++|+++|+||.+|+.+.+....              
T Consensus        14 l~~~~v~~im~~--~-~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~--------------   76 (159)
T 3fv6_A           14 LKKLQVKDFQSI--P-VVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRASIGQQ--------------   76 (159)
T ss_dssp             HTTCBGGGSCBC--C-CEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHTSCS--------------
T ss_pred             HhhCCHHHHcCC--C-EEECCCCcHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHhhccC--------------
Confidence            346789999986  4 59999999999999999999999999998899999999999998642111              


Q ss_pred             hhhhhHHHHHHHhhcCCCcccccccC--CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCC---cEEEEEehHHHHHHHH
Q 026712          150 TWKTFNELQRLLSKTNGKVVGDLMTP--APLVVHENTNLEDAARLLLETKYRRLPVVDGYG---KLVGLITRGNVVRAAL  224 (234)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~---~~vGiit~~dll~~l~  224 (234)
                                   .....++.++|.+  +++++.+++++.+|++.|.+++++++||+|++|   +++|+||..||++++.
T Consensus        77 -------------~~~~~~v~~~m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~~~vGiit~~dil~~l~  143 (159)
T 3fv6_A           77 -------------ELTSVPVHIIMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMTKILV  143 (159)
T ss_dssp             -------------CTTTCBGGGTSEETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEECSSSEEEEEEEEHHHHHHHHH
T ss_pred             -------------cccCcCHHHHHcCCCCcEEECCCCCHHHHHHHHHHcCCcEEEEEeCCCcceeEEEEEEHHHHHHHHH
Confidence                         1245789999987  899999999999999999999999999999877   9999999999999999


Q ss_pred             HhhhhCCC
Q 026712          225 QIKRDGER  232 (234)
Q Consensus       225 ~~~~~~~~  232 (234)
                      +.......
T Consensus       144 ~~~~~~~~  151 (159)
T 3fv6_A          144 SLSENEIL  151 (159)
T ss_dssp             HHHTTCCC
T ss_pred             HHhhcchh
Confidence            98776543

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=99.87  E-value=4.7e-21  Score=142.38  Aligned_cols=129  Identities=26%  Similarity=0.366  Sum_probs=113.1

Q ss_pred             CccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccch
Q 026712           71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNST  150 (234)
Q Consensus        71 ~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~  150 (234)
                      ...+++++|.+  ++.++++++++.+|.+.|.+++++.+||+|++|+++|+|+.+|+.+.....+.              
T Consensus         5 ~~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~--------------   68 (138)
T 2yzi_A            5 MKAPIKVYMTK--KLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGL--------------   68 (138)
T ss_dssp             TTSBGGGTCBC--CCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCC--------------
T ss_pred             hhhhHHHHhcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhcCC--------------
Confidence            46789999998  89999999999999999999999999999988999999999999743211110              


Q ss_pred             hhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHhhhh
Q 026712          151 WKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIKRD  229 (234)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~~~~  229 (234)
                                   ....++.++|.++++++.+++++.++++.|.+++.+++ |+|++|+++|+||..|+++.+.+....
T Consensus        69 -------------~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~~g~~~Giit~~dil~~~~~~~~~  133 (138)
T 2yzi_A           69 -------------PYDIPVERIMTRNLITANVNTPLGEVLRKMAEHRIKHI-LIEEEGKIVGIFTLSDLLEASRRRLET  133 (138)
T ss_dssp             -------------CTTSBGGGTCBCSCCEEETTSBHHHHHHHHHHHTCSEE-EEEETTEEEEEEEHHHHHHHHHCCSCC
T ss_pred             -------------cccCCHHHHhhCCCeEECCCCcHHHHHHHHHhcCCCEE-EECCCCCEEEEEEHHHHHHHHHHHHHh
Confidence                         23478999999999999999999999999999999999 999889999999999999999876543

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.87  E-value=4.7e-21  Score=152.54  Aligned_cols=124  Identities=20%  Similarity=0.289  Sum_probs=113.3

Q ss_pred             CccccccccccCCCceeecCCCCHHHHHHHHHhC---CCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCc
Q 026712           71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEK---RITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNV  147 (234)
Q Consensus        71 ~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~---~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~  147 (234)
                      ...+++++|++  +++++++++++.+|++.|.+.   ++..+||+|++|+++|+|+.+|++..                 
T Consensus        52 ~~~~v~~iM~~--~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~-----------------  112 (205)
T 3kxr_A           52 SENEIGRYTDH--QMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEADKYLGTVRRYDIFKH-----------------  112 (205)
T ss_dssp             CTTCGGGGCBC--CCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTTCBEEEEEEHHHHTTS-----------------
T ss_pred             CcchHHhhccC--ceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCCCeEEEEEEHHHHHhC-----------------
Confidence            46689999998  899999999999999999986   78999999999999999999999753                 


Q ss_pred             cchhhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHhh
Q 026712          148 NSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIK  227 (234)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~~  227 (234)
                                      ....++.++|.++++++.+++++.+|++.|.+++++.+||||++|+++|+||..|+++.+.+..
T Consensus       113 ----------------~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~~g~lvGiIT~~Dil~~i~~e~  176 (205)
T 3kxr_A          113 ----------------EPHEPLISLLSEDSRALTANTTLLDAAEAIEHSREIELPVIDDAGELIGRVTLRAATALVREHY  176 (205)
T ss_dssp             ----------------CTTSBGGGGCCSSCCCEETTSCHHHHHHHHHTSSCSEEEEECTTSBEEEEEEHHHHHHHHHHHH
T ss_pred             ----------------CCcchHHHHhcCCCeEECCCCCHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHHHHHH
Confidence                            2457899999999999999999999999999999999999998899999999999999998765


Q ss_pred             hh
Q 026712          228 RD  229 (234)
Q Consensus       228 ~~  229 (234)
                      .+
T Consensus       177 ~e  178 (205)
T 3kxr_A          177 EA  178 (205)
T ss_dssp             C-
T ss_pred             HH
Confidence            54

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=99.86  E-value=3.3e-21  Score=147.93  Aligned_cols=134  Identities=23%  Similarity=0.376  Sum_probs=115.0

Q ss_pred             CcCccccccccccC-CCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCc
Q 026712           69 RNGTYTVGDFMTKK-EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNV  147 (234)
Q Consensus        69 ~~~~~~v~~im~~~-~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~  147 (234)
                      ....++|+++|.+. .++.++.+++++.+|+++|.+++++.+||+|++|+++|+||.+|+.+.+....            
T Consensus        20 ~l~~~~v~dim~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~------------   87 (165)
T 3fhm_A           20 QGMATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVKAVAGQG------------   87 (165)
T ss_dssp             SSSSCBHHHHHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHG------------
T ss_pred             hhhhcCHHHHhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHHhcC------------
Confidence            45578999999952 25899999999999999999999999999999999999999999987532110            


Q ss_pred             cchhhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHhh
Q 026712          148 NSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIK  227 (234)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~~  227 (234)
                                    ......++.++|.++++++.+++++.++++.|.+++.+++||+|+ |+++|+||..||++++.+..
T Consensus        88 --------------~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~~~Giit~~dil~~~~~~~  152 (165)
T 3fhm_A           88 --------------AASLQQSVSVAMTKNVVRCQHNSTTDQLMEIMTGGRFRHVPVEEN-GRLAGIISIGDVVKARIGEI  152 (165)
T ss_dssp             --------------GGGGTSBGGGTSBSSCCCBCTTCBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHTTCC-
T ss_pred             --------------CccccCCHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHHHHH
Confidence                          123467899999999999999999999999999999999999997 99999999999999987765


Q ss_pred             hh
Q 026712          228 RD  229 (234)
Q Consensus       228 ~~  229 (234)
                      ..
T Consensus       153 ~~  154 (165)
T 3fhm_A          153 EA  154 (165)
T ss_dssp             --
T ss_pred             HH
Confidence            43

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=99.86  E-value=5.7e-21  Score=142.62  Aligned_cols=124  Identities=18%  Similarity=0.206  Sum_probs=110.0

Q ss_pred             ccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCC--cEEEEEehHHHhhhhccCCCCCCCCCCCCCccc
Q 026712           72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDW--KLVGVVSDYDLLALDSISGGNQNDTSLFPNVNS  149 (234)
Q Consensus        72 ~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~--~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~  149 (234)
                      ..+++++|.+  ++.++++++++.+|++.|.+++++.+||+|+++  +++|+|+.+|+.+.+....              
T Consensus         4 ~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~Givt~~dl~~~~~~~~--------------   67 (141)
T 2rih_A            4 AIRTSELLKR--PPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRL--------------   67 (141)
T ss_dssp             -CBGGGGCCS--CCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTC--------------
T ss_pred             ceEHHHHhcC--CCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCcceeEEEEEHHHHHHHHhcCC--------------
Confidence            4579999998  899999999999999999999999999999888  9999999999987532110              


Q ss_pred             hhhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHh
Q 026712          150 TWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQI  226 (234)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~  226 (234)
                                    ....++.++|.++++++.++ ++.+|++.|.+++.+++||+|++|+++|+||..|+++.+...
T Consensus        68 --------------~~~~~v~~~m~~~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~~  129 (141)
T 2rih_A           68 --------------DLDGPAMPIANSPITVLDTD-PVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFERAIL  129 (141)
T ss_dssp             --------------CTTSBSGGGCBCCCEEETTS-BHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSCHHHH
T ss_pred             --------------CCCCCHHHHcCCCCeEEcCC-CHHHHHHHHHHcCCeEEEEEcCCCcEEEEEEHHHHHHHHHHH
Confidence                          23578999999999999999 999999999999999999999889999999999998876654

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.86  E-value=1.7e-21  Score=147.73  Aligned_cols=127  Identities=23%  Similarity=0.363  Sum_probs=110.9

Q ss_pred             CccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEE-cC-CCcEEEEEehHHHhhhhccCCCCCCCCCCCCCcc
Q 026712           71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVI-DD-DWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVN  148 (234)
Q Consensus        71 ~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVv-d~-~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~  148 (234)
                      ...+|+++|.+..++.++++++++.+|++.|.+++++.+||+ ++ +|+++|+||.+|+.+.+.                
T Consensus        18 ~~~~v~~iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~~----------------   81 (153)
T 3oco_A           18 NDKVASDVMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQAR----------------   81 (153)
T ss_dssp             HHCBHHHHSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHHH----------------
T ss_pred             CCCEeeeEecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHHh----------------
Confidence            367899999864468999999999999999999999999999 65 489999999999987531                


Q ss_pred             chhhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHhhh
Q 026712          149 STWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIKR  228 (234)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~~~  228 (234)
                                    .....++.++| ++++++.+++++.+|++.|.+++.+.+||+|++|+++|+||..|+++.+.....
T Consensus        82 --------------~~~~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~~vGivt~~dil~~l~~~~~  146 (153)
T 3oco_A           82 --------------IDDKAKISTIM-RDIVSVPENMKVPDVMEEMSAHRVPMAIVIDEYGGTSGIITDKDVYEELFGNLR  146 (153)
T ss_dssp             --------------HHTTSBGGGTC-BCCEEEETTSBHHHHHHHHHHTTCSCEEEECTTSCEEEEECHHHHHHHHHC---
T ss_pred             --------------cCCCCcHHHHh-CCCeEECCCCCHHHHHHHHHHcCCcEEEEEeCCCCEEEEeeHHHHHHHHhccCC
Confidence                          12357899999 889999999999999999999999999999988999999999999999986443

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=99.86  E-value=5.1e-21  Score=142.09  Aligned_cols=127  Identities=33%  Similarity=0.530  Sum_probs=111.8

Q ss_pred             cCccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHH-hhhhccCCCCCCCCCCCCCcc
Q 026712           70 NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDL-LALDSISGGNQNDTSLFPNVN  148 (234)
Q Consensus        70 ~~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl-~~~~~~~~~~~~~~~~~~~~~  148 (234)
                      ....+++++|.+  ++.++++++++.+|.+.|.+++.+.+||+|++|+++|+|+.+|+ .+.+...              
T Consensus         5 l~~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~--------------   68 (138)
T 2p9m_A            5 LKNIKVKDVMTK--NVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLIRDK--------------   68 (138)
T ss_dssp             CTTCBGGGTSBC--SCCCEETTSBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHHHHHTTTC--------------
T ss_pred             cccCCHHHhhcC--CceEECCCCcHHHHHHHHHHCCCcEEEEECCCCeEEEEEEHHHHHHHHHhhc--------------
Confidence            346789999988  88999999999999999999999999999988999999999999 7653211              


Q ss_pred             chhhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcC-----CCEEEEEcCCCcEEEEEehHHHHHHH
Q 026712          149 STWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETK-----YRRLPVVDGYGKLVGLITRGNVVRAA  223 (234)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~-----~~~vpVv~~~~~~vGiit~~dll~~l  223 (234)
                                    .....++.++|.+++.++.+++++.++++.|.+++     .+++||+|++|+++|+||..|+++.+
T Consensus        69 --------------~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~  134 (138)
T 2p9m_A           69 --------------YTLETTIGDVMTKDVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGDIIRTI  134 (138)
T ss_dssp             --------------CCSSCBHHHHSCSSCCCEETTSBHHHHHHHHTCC-----CCCEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred             --------------ccCCcCHHHHhCCCcEEECCCCCHHHHHHHHHhcCCccccccEEEEECCCCeEEEEEEHHHHHHHH
Confidence                          12356899999999999999999999999999999     99999999889999999999999988


Q ss_pred             HHh
Q 026712          224 LQI  226 (234)
Q Consensus       224 ~~~  226 (234)
                      .+.
T Consensus       135 ~~~  137 (138)
T 2p9m_A          135 SKI  137 (138)
T ss_dssp             HHC
T ss_pred             Hhh
Confidence            653

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=99.85  E-value=5.4e-21  Score=139.49  Aligned_cols=123  Identities=20%  Similarity=0.347  Sum_probs=107.6

Q ss_pred             cccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhh
Q 026712           73 YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWK  152 (234)
Q Consensus        73 ~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~  152 (234)
                      ++++++|.+  ++.++++++++.+|.+.|.+++.+.+||+| +|+++|+|+.+|+.+.+....                 
T Consensus         1 m~v~~~m~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~G~it~~dl~~~~~~~~-----------------   60 (125)
T 1pbj_A            1 MRVEDVMVT--DVDTIDITASLEDVLRNYVENAKGSSVVVK-EGVRVGIVTTWDVLEAIAEGD-----------------   60 (125)
T ss_dssp             -CHHHHCBC--SCCEEETTCBHHHHHHHHHHHCCCEEEEEE-TTEEEEEEEHHHHHHHHHHTC-----------------
T ss_pred             CCHHHhcCC--CceEECCCCcHHHHHHHHHHcCCCEEEEEe-CCeeEEEEeHHHHHHHHhcCC-----------------
Confidence            368899998  899999999999999999999999999999 899999999999987532110                 


Q ss_pred             hhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHh
Q 026712          153 TFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQI  226 (234)
Q Consensus       153 ~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~  226 (234)
                                .....++.++|.+++.++.+++++.++++.|.+++.+++||+|+ |+++|+||..|+++++.+.
T Consensus        61 ----------~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~~~~Gvit~~dl~~~l~~~  123 (125)
T 1pbj_A           61 ----------DLAEVKVWEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVEED-DEIIGVISATDILRAKMAK  123 (125)
T ss_dssp             ----------CTTTSBHHHHCBCGGGEECTTSCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHHC--
T ss_pred             ----------cccccCHHHHcCCCCeEECCCCCHHHHHHHHHhcCCcEEEEEEC-CEEEEEEEHHHHHHHHHhc
Confidence                      01357899999999999999999999999999999999999997 9999999999999987653

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=99.85  E-value=7.3e-21  Score=145.32  Aligned_cols=135  Identities=28%  Similarity=0.338  Sum_probs=112.8

Q ss_pred             ccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchh
Q 026712           72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTW  151 (234)
Q Consensus        72 ~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~  151 (234)
                      ..+|+++|.+  ++.++++++++.+|+++|.+.+++.+||+|++|+++|+|+.+|+.+..........            
T Consensus         4 ~~~v~dim~~--~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~~~~~~------------   69 (160)
T 2o16_A            4 MIKVEDMMTR--HPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSA------------   69 (160)
T ss_dssp             CCBGGGTSEE--SCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHCC---------------
T ss_pred             cCcHHHHhcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHHhhcccc------------
Confidence            5689999998  89999999999999999999999999999988999999999999876421110000            


Q ss_pred             hhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHhhh
Q 026712          152 KTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIKR  228 (234)
Q Consensus       152 ~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~~~  228 (234)
                             .........++.++|.++++++.+++++.+|++.|.+++.+.+||+|+ |+++|+||..||++++.+...
T Consensus        70 -------~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~lvGiit~~dil~~~~~~~~  138 (160)
T 2o16_A           70 -------QGDSLAFETPLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAK-DVLVGIITDSDFVTIAINLLE  138 (160)
T ss_dssp             -------------CCCBHHHHSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEET-TEEEEEECHHHHHHHHHHHHH
T ss_pred             -------cccchhcccCHHHHhcCCCeEECCCCCHHHHHHHHHHhCCCEEEEEEC-CEEEEEEEHHHHHHHHHHHhc
Confidence                   000113457899999999999999999999999999999999999996 999999999999999887543

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=99.85  E-value=1.1e-20  Score=139.90  Aligned_cols=123  Identities=28%  Similarity=0.445  Sum_probs=108.6

Q ss_pred             ccccccc---cCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccch
Q 026712           74 TVGDFMT---KKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNST  150 (234)
Q Consensus        74 ~v~~im~---~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~  150 (234)
                      +++++|.   +  ++.++++++++.+|++.|.+++.+.+||+| +|+++|+|+.+|+.+.....+.              
T Consensus         7 ~v~~im~~~~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~Givt~~dl~~~~~~~~~--------------   69 (135)
T 2rc3_A            7 TVKHLLQEKGH--TVVAIGPDDSVFNAMQKMAADNIGALLVMK-DEKLVGILTERDFSRKSYLLDK--------------   69 (135)
T ss_dssp             BHHHHHHHHCC--CCCEECTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHGGGSSS--------------
T ss_pred             eHHHHHhcCCC--CcEEECCCCcHHHHHHHHHhcCCCEEEEEE-CCEEEEEEehHHHHHHHHHcCC--------------
Confidence            8999998   6  899999999999999999999999999999 7999999999999864222110              


Q ss_pred             hhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHh
Q 026712          151 WKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQI  226 (234)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~  226 (234)
                                  .....++.++|.+++.++.+++++.++++.|.+++.+++||+| +|+++|+||..|+++++.+.
T Consensus        70 ------------~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dll~~~~~~  132 (135)
T 2rc3_A           70 ------------PVKDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDAISQ  132 (135)
T ss_dssp             ------------CGGGSBGGGTSBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHC-
T ss_pred             ------------CcccCCHHHhccCCCeEECCCCcHHHHHHHHHHhCCCEEEEEe-CCEEEEEEEHHHHHHHHHhc
Confidence                        0235789999999999999999999999999999999999999 79999999999999998765

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.85  E-value=9.1e-21  Score=146.95  Aligned_cols=126  Identities=21%  Similarity=0.218  Sum_probs=110.0

Q ss_pred             cCccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCC-CcEEEEEehHHHhhhhccCCCCCCCCCCCCCcc
Q 026712           70 NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDD-WKLVGVVSDYDLLALDSISGGNQNDTSLFPNVN  148 (234)
Q Consensus        70 ~~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~  148 (234)
                      +...+|+++|++..+++++++++++.+|++.|.+++++.+||+|++ ++++|+|+.+|+++...                
T Consensus        33 l~~~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl~~~~~----------------   96 (173)
T 3ocm_A           33 LAERSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDLVADLI----------------   96 (173)
T ss_dssp             HTTSCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHHHHHHH----------------
T ss_pred             cCCCCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHHHHHHh----------------
Confidence            3477899999864478999999999999999999999999999987 89999999999987531                


Q ss_pred             chhhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHhh
Q 026712          149 STWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIK  227 (234)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~~  227 (234)
                                    .....++. + .++++++.+++++.+|++.|.+++.+.+||+|++|+++|+||..||++.+....
T Consensus        97 --------------~~~~~~v~-~-~~~~~~v~~~~~l~~al~~m~~~~~~~~~Vvde~g~lvGiIT~~Dil~~l~~~i  159 (173)
T 3ocm_A           97 --------------TEGRVRRN-R-LRDPIIVHESIGILRLMDTLKRSRGQLVLVADEFGAIEGLVTPIDVFEAIAGEF  159 (173)
T ss_dssp             --------------HHSSCCGG-G-SBCCCEECGGGCHHHHHHHHHHSTTCCEEEECTTCCEEEEECHHHHHHHHHCCC
T ss_pred             --------------cCCcchhH-h-cCCCeEECCCCcHHHHHHHHHHcCCeEEEEEeCCCCEEEEEeHHHHHHHHhCcC
Confidence                          11345677 4 467899999999999999999999999999998899999999999999998644

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=99.84  E-value=4.9e-21  Score=141.43  Aligned_cols=125  Identities=24%  Similarity=0.391  Sum_probs=108.1

Q ss_pred             CccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh-hhccCCCCCCCCCCCCCccc
Q 026712           71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA-LDSISGGNQNDTSLFPNVNS  149 (234)
Q Consensus        71 ~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~-~~~~~~~~~~~~~~~~~~~~  149 (234)
                      ...+++++|.+  ++.++++++++.+|++.|.+++.+.+||+|++|+++|+|+.+|+.+ .+....              
T Consensus         6 ~~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~--------------   69 (133)
T 1y5h_A            6 TMTTARDIMNA--GVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGL--------------   69 (133)
T ss_dssp             --CCHHHHSEE--TCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGGTC--------------
T ss_pred             hhcCHHHHhcC--CceEeCCCCCHHHHHHHHHHhCCCeEEEECCCCeEEEEEeHHHHHHHHHhcCC--------------
Confidence            35689999998  8899999999999999999999999999988899999999999984 321110              


Q ss_pred             hhhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHH
Q 026712          150 TWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQ  225 (234)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~  225 (234)
                                   .....++.++|.++++++.+++++.++++.|.+++.+++||+|+ |+++|+||..|+++++.+
T Consensus        70 -------------~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-g~~~Giit~~dil~~l~~  131 (133)
T 1y5h_A           70 -------------DPNTATAGELARDSIYYVDANASIQEMLNVMEEHQVRRVPVISE-HRLVGIVTEADIARHLPE  131 (133)
T ss_dssp             -------------CTTTSBHHHHHTTCCCCEETTCCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHTCC-
T ss_pred             -------------CccccCHHHHhcCCCEEECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHHh
Confidence                         01347899999999999999999999999999999999999996 999999999999987654

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.84  E-value=2e-20  Score=142.32  Aligned_cols=141  Identities=23%  Similarity=0.376  Sum_probs=114.2

Q ss_pred             CCcCccccccccccCCCceeecCCCCHHHHHHHHHhCCCCe-eEEEcCCCcEEEEEehHHHhhhhccC---CCCCCCCCC
Q 026712           68 PRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITG-FPVIDDDWKLVGVVSDYDLLALDSIS---GGNQNDTSL  143 (234)
Q Consensus        68 ~~~~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~-~pVvd~~~~~~Givt~~dl~~~~~~~---~~~~~~~~~  143 (234)
                      ......+++++|.+  ++.++++++++.+|++.|.+.+.+. +||+|++ +++|+||.+|+.+.....   ....     
T Consensus        11 ~~~~~~~v~~im~~--~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~~-~~vGivt~~dl~~~~~~~~~~~~~~-----   82 (157)
T 1o50_A           11 HHMKVKDVCKLISL--KPTVVEEDTPIEEIVDRILEDPVTRTVYVARDN-KLVGMIPVMHLLKVSGFHFFGFIPK-----   82 (157)
T ss_dssp             TTCBHHHHTTSSCC--CCEEECTTCBHHHHHHHHHHSTTCCEEEEEETT-EEEEEEEHHHHHHHHHHHHHCCCC------
T ss_pred             hhhccccHhhcccC--CCceECCCCCHHHHHHHHHhCCCCccEEEEECC-EEEEEEEHHHHHHHHhhhHHhhhcc-----
Confidence            34557789999998  8999999999999999999999999 9999987 999999999998763210   0000     


Q ss_pred             CCCccchhhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHH
Q 026712          144 FPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAA  223 (234)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l  223 (234)
                             +..   +..........++.++|.+ ++++.+++++.+|++.|.+++.+.+||+|++|+++|+||..||++.+
T Consensus        83 -------~~~---~~~~~~~~~~~~v~~im~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dll~~l  151 (157)
T 1o50_A           83 -------EEL---IRSSMKRLIAKNASEIMLD-PVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLAL  151 (157)
T ss_dssp             ----------------CCCCCSSCBHHHHCBC-CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHH
T ss_pred             -------HHH---HHHHHHHHcCCcHHHHcCC-CeEECCCCCHHHHHHHHHHCCCcEEEEEcCCCEEEEEEEHHHHHHHH
Confidence                   000   0000011345789999999 99999999999999999999999999999889999999999999998


Q ss_pred             HHhh
Q 026712          224 LQIK  227 (234)
Q Consensus       224 ~~~~  227 (234)
                      .+..
T Consensus       152 ~~~~  155 (157)
T 1o50_A          152 WKGR  155 (157)
T ss_dssp             HHSC
T ss_pred             HHhh
Confidence            7653

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=99.84  E-value=3.3e-20  Score=140.80  Aligned_cols=136  Identities=19%  Similarity=0.245  Sum_probs=113.4

Q ss_pred             cCccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccc
Q 026712           70 NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNS  149 (234)
Q Consensus        70 ~~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~  149 (234)
                      ....+|+++|.+..++.++++++++.+|++.|.+++++.+||+|++|+++|+|+.+|+.+.......             
T Consensus         8 l~~~~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~-------------   74 (157)
T 2emq_A            8 FMQMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMMMDAILGLER-------------   74 (157)
T ss_dssp             --CCBSTTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTTCCEEEEEEHHHHHHHSBCSSS-------------
T ss_pred             HhhCcHHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcCCCCEEEEeeHHHHHHHHhcccc-------------
Confidence            3467899999853368899999999999999999999999999988999999999999876432100             


Q ss_pred             hhhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHhhhh
Q 026712          150 TWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIKRD  229 (234)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~~~~  229 (234)
                       |.        .......++.++|.++++++.+++++.+|++.|.++++  +||+|++|+++|+||..|+++.+.+...+
T Consensus        75 -~~--------~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~~g~~~Giit~~dil~~~~~~~~~  143 (157)
T 2emq_A           75 -IE--------FERLETMKVEEVMNRNIPRLRLDDSLMKAVGLIVNHPF--VCVENDDGYFAGIFTRREVLKQLNKQLHR  143 (157)
T ss_dssp             -BC--------GGGGGTCBGGGTCBCCCCEEETTSBHHHHHHHHHHSSE--EEEECSSSSEEEEEEHHHHHHHHHHTTCC
T ss_pred             -cc--------hHHhcCCcHHHHhCCCCceecCCCcHHHHHHHHhhCCE--EEEEcCCCeEEEEEEHHHHHHHHHHHhhc
Confidence             00        00124578999999999999999999999999999987  99999889999999999999999876543

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.84  E-value=1.1e-20  Score=143.88  Aligned_cols=120  Identities=21%  Similarity=0.367  Sum_probs=106.3

Q ss_pred             cCccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCC-cEEEEEehHHHhhhhccCCCCCCCCCCCCCcc
Q 026712           70 NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDW-KLVGVVSDYDLLALDSISGGNQNDTSLFPNVN  148 (234)
Q Consensus        70 ~~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~-~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~  148 (234)
                      ....+|+++|.+..++.++++++++.+|++.|.+++++.+||+|+++ +++|+||.+|+.+....               
T Consensus        35 l~~~~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~---------------   99 (156)
T 3oi8_A           35 FSDLEVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLKYMFN---------------   99 (156)
T ss_dssp             HTTCBGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGSSC---------------
T ss_pred             cCCCCHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHc---------------
Confidence            34778999998644689999999999999999999999999999874 99999999999875310               


Q ss_pred             chhhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHH
Q 026712          149 STWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVV  220 (234)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll  220 (234)
                                     ....++.++|.+ ++++.+++++.+|++.|.+++.+.+||+|++|+++|+||..|++
T Consensus       100 ---------------~~~~~v~~im~~-~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~g~~~Givt~~Dil  155 (156)
T 3oi8_A          100 ---------------PEQFHLKSILRP-AVFVPEGKSLTALLKEFREQRNHMAIVIDEYGGTSGLVTFEDII  155 (156)
T ss_dssp             ---------------GGGCCHHHHCBC-CCEEETTSBHHHHHHHHHHTTCCEEEEECTTSSEEEEEEHHHHC
T ss_pred             ---------------CCcccHHHHcCC-CEEECCCCCHHHHHHHHHhcCCeEEEEECCCCCEEEEEEHHHhc
Confidence                           134679999965 89999999999999999999999999999889999999999986

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.84  E-value=2.4e-20  Score=140.61  Aligned_cols=122  Identities=23%  Similarity=0.355  Sum_probs=107.5

Q ss_pred             ccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchh
Q 026712           72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTW  151 (234)
Q Consensus        72 ~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~  151 (234)
                      .++|+++|.+..++.++.+++++.+|++.|.+++++.+||+|++|+++|+||.+|+.+.+....                
T Consensus        27 ~~~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~----------------   90 (149)
T 3k2v_A           27 LLRVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDDMNIIGIFTDGDLRRVFDTGV----------------   90 (149)
T ss_dssp             TSBGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTTCBEEEEEEHHHHHHHHCSSS----------------
T ss_pred             ccCHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCCCcEEEEecHHHHHHHHhcCC----------------
Confidence            3589999986446889999999999999999999999999998899999999999998643211                


Q ss_pred             hhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712          152 KTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR  221 (234)
Q Consensus       152 ~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~  221 (234)
                                 .....++.++|.++++++.+++++.++++.|.+++++.+||+|+ ++++|+||..||++
T Consensus        91 -----------~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~~Giit~~dil~  148 (149)
T 3k2v_A           91 -----------DMRDASIADVMTRGGIRIRPGTLAVDALNLMQSRHITCVLVADG-DHLLGVVHMHDLLR  148 (149)
T ss_dssp             -----------CCTTCBHHHHSEESCCEECTTCBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHTC
T ss_pred             -----------CcccCcHHHHcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEecC-CEEEEEEEHHHhhc
Confidence                       02457899999999999999999999999999999999999995 49999999999975

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=99.83  E-value=4.5e-20  Score=137.71  Aligned_cols=127  Identities=24%  Similarity=0.380  Sum_probs=107.1

Q ss_pred             cccccc---ccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCcc
Q 026712           72 TYTVGD---FMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVN  148 (234)
Q Consensus        72 ~~~v~~---im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~  148 (234)
                      ..++++   +|.+  ++.++++++++.+|++.|.+++++.+||+|++|+++|+|+.+|+.+.+.....            
T Consensus         7 ~~~v~~~~~~~~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~------------   72 (144)
T 2nyc_A            7 KIPIGDLNIITQD--NMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIY------------   72 (144)
T ss_dssp             GSBGGGSSCCBCS--SCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHTC--------------
T ss_pred             hcchhhcCCCCCC--CceEECCCCcHHHHHHHHHHcCcceeeEEcCCCcEEEEEcHHHHHHHhccccc------------
Confidence            345677   7876  89999999999999999999999999999988999999999999875321100            


Q ss_pred             chhhhhHHHHHHHhhcCCCcccccccC------CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHH
Q 026712          149 STWKTFNELQRLLSKTNGKVVGDLMTP------APLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRA  222 (234)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~v~~im~~------~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~  222 (234)
                                    .....++.++|.+      +++++.+++++.++++.|.+++.+++||+|++|+++|+||..|+++.
T Consensus        73 --------------~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~  138 (144)
T 2nyc_A           73 --------------NDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKY  138 (144)
T ss_dssp             ----------------CCSBHHHHHHHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHH
T ss_pred             --------------ccCCccHHHHHhcCccccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHH
Confidence                          0235678888865      68899999999999999999999999999988999999999999999


Q ss_pred             HHHh
Q 026712          223 ALQI  226 (234)
Q Consensus       223 l~~~  226 (234)
                      +.+.
T Consensus       139 l~~~  142 (144)
T 2nyc_A          139 ILLG  142 (144)
T ss_dssp             HHHC
T ss_pred             HHhc
Confidence            8764

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=99.83  E-value=3.9e-20  Score=140.52  Aligned_cols=130  Identities=25%  Similarity=0.403  Sum_probs=112.4

Q ss_pred             cccccccccC----CCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCcc
Q 026712           73 YTVGDFMTKK----EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVN  148 (234)
Q Consensus        73 ~~v~~im~~~----~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~  148 (234)
                      .+|+++|.+.    .++.++++++++.+|++.|.+++++.+||++ +|+++|+|+.+|+.+.+......           
T Consensus         7 ~~v~dim~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~-----------   74 (157)
T 4fry_A            7 TTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVD-GDDIAGIVTERDYARKVVLQERS-----------   74 (157)
T ss_dssp             CBHHHHHHHSTTTTCCCCEEETTSBHHHHHHHHHHHTCSEEEEES-SSSEEEEEEHHHHHHHSGGGTCC-----------
T ss_pred             HHHHHHHhcccccCCCCeEECCCCcHHHHHHHHHHcCCCEEEEee-CCEEEEEEEHHHHHHHHHhccCC-----------
Confidence            4799999853    3679999999999999999999999999965 78999999999998764322210           


Q ss_pred             chhhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHhhh
Q 026712          149 STWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIKR  228 (234)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~~~  228 (234)
                                     ....++.++|.++++++.+++++.++++.|.+++++++||+| +|+++|+||..||++++.+...
T Consensus        75 ---------------~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dil~~l~~~~~  138 (157)
T 4fry_A           75 ---------------SKATRVEEIMTAKVRYVEPSQSTDECMALMTEHRMRHLPVLD-GGKLIGLISIGDLVKSVIADQQ  138 (157)
T ss_dssp             ---------------SSSCBHHHHSBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTTCC
T ss_pred             ---------------ccccCHHHHcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHHHHH
Confidence                           235789999999999999999999999999999999999999 7999999999999999987655


Q ss_pred             hC
Q 026712          229 DG  230 (234)
Q Consensus       229 ~~  230 (234)
                      +.
T Consensus       139 ~~  140 (157)
T 4fry_A          139 FT  140 (157)
T ss_dssp             CC
T ss_pred             hh
Confidence            43

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=99.83  E-value=3.9e-20  Score=144.42  Aligned_cols=126  Identities=25%  Similarity=0.303  Sum_probs=111.2

Q ss_pred             ccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchh
Q 026712           72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTW  151 (234)
Q Consensus        72 ~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~  151 (234)
                      ..+++++|.+  +++++++++++.+|+++|.+++++.+||+|++|+++|+|+.+|+++.+.....               
T Consensus         8 ~~~v~~im~~--~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~g~~vGivt~~dl~~~~~~~~~---------------   70 (184)
T 1pvm_A            8 FMRVEKIMNS--NFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNK---------------   70 (184)
T ss_dssp             CCBGGGTSBT--TCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGGCC---------------
T ss_pred             ccCHHHhcCC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhccc---------------
Confidence            3689999998  89999999999999999999999999999988999999999999875321110               


Q ss_pred             hhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHH
Q 026712          152 KTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQ  225 (234)
Q Consensus       152 ~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~  225 (234)
                                 .....++.++|.++++++.+++++.+|++.|.+++.+.+||+|++|+++|+||..||++++.+
T Consensus        71 -----------~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~  133 (184)
T 1pvm_A           71 -----------KPDEVPIRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLSR  133 (184)
T ss_dssp             -----------CGGGSBGGGTSBSSCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTSCH
T ss_pred             -----------CcccCCHHHHhCCCCcEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHHh
Confidence                       123468999999999999999999999999999999999999988999999999999987655

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=99.83  E-value=7.4e-20  Score=139.61  Aligned_cols=133  Identities=18%  Similarity=0.321  Sum_probs=111.7

Q ss_pred             CccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcC--CCcEEEEEehHHHhhhhccCCCCCCCCCCCCCcc
Q 026712           71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDD--DWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVN  148 (234)
Q Consensus        71 ~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~--~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~  148 (234)
                      ...+|+++|.+  ++.++++++++.+|+++|.+++++.+||+|+  +|+++|+||.+|+.+.........          
T Consensus        11 ~~~~v~dim~~--~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~~~~~~~----------   78 (164)
T 2pfi_A           11 HHVRVEHFMNH--SITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPSR----------   78 (164)
T ss_dssp             CSCBHHHHCBC--CCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHC---------------
T ss_pred             cCCCHHHHcCC--CCeEECCCCcHHHHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHHhhcccc----------
Confidence            36789999998  8999999999999999999999999999996  789999999999987642211000          


Q ss_pred             chhhhhHHHHHHHhhcCCCcccccccCC------CeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHH
Q 026712          149 STWKTFNELQRLLSKTNGKVVGDLMTPA------PLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRA  222 (234)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~v~~im~~~------~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~  222 (234)
                                   ......++.++|..+      ++++.+++++.+|++.|.+++.+++||+| +|+++|+||..||++.
T Consensus        79 -------------~~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~l~Giit~~dil~~  144 (164)
T 2pfi_A           79 -------------APGHQQCLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTS-RGRAVGCVSWVEMKKA  144 (164)
T ss_dssp             ---------------CCCCBHHHHHHTTCCCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHHHH
T ss_pred             -------------CCcccchhhhhhcccccccCCceEECCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEEEHHHHHHH
Confidence                         001345678888765      78999999999999999999999999999 7999999999999999


Q ss_pred             HHHhhhh
Q 026712          223 ALQIKRD  229 (234)
Q Consensus       223 l~~~~~~  229 (234)
                      +.+....
T Consensus       145 ~~~~~~~  151 (164)
T 2pfi_A          145 ISNLTNP  151 (164)
T ss_dssp             HHHHHSC
T ss_pred             HHhhhCC
Confidence            9886644

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.83  E-value=1.5e-19  Score=144.58  Aligned_cols=120  Identities=30%  Similarity=0.392  Sum_probs=110.0

Q ss_pred             ccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchh
Q 026712           72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTW  151 (234)
Q Consensus        72 ~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~  151 (234)
                      ..+++++|.+  ++.++.+++++.+|+++|.+.+.+.+||+|++++++|+||.+|+.+..                    
T Consensus        12 ~~~~~~~~~~--~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~l~Givt~~dl~~~~--------------------   69 (213)
T 1vr9_A           12 HMKVKKWVTQ--DFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLD--------------------   69 (213)
T ss_dssp             -CBGGGGCBS--CSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTSC--------------------
T ss_pred             ccCHHHhhcC--CCeEECCCCcHHHHHHHHHHCCCCEEEEEcCCCEEEEEEEHHHHHhhc--------------------
Confidence            4478999998  899999999999999999999999999999889999999999998642                    


Q ss_pred             hhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHh
Q 026712          152 KTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQI  226 (234)
Q Consensus       152 ~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~  226 (234)
                                   ...++.++|.++++++.+++++.+|++.|.+++++++||+|++|+++|+||.+|+++.+...
T Consensus        70 -------------~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~Dil~~~~~~  131 (213)
T 1vr9_A           70 -------------LDSSVFNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEA  131 (213)
T ss_dssp             -------------TTSBSGGGCBCTTCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHHHS
T ss_pred             -------------CCCcHHHHccCCCEEECCCCcHHHHHHHHHHhCCCEEEEEcCCCEEEEEEEHHHHHHHHHHH
Confidence                         24679999999999999999999999999999999999999879999999999999988754

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=99.82  E-value=5.6e-20  Score=140.04  Aligned_cols=136  Identities=19%  Similarity=0.251  Sum_probs=113.1

Q ss_pred             cCccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccc
Q 026712           70 NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNS  149 (234)
Q Consensus        70 ~~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~  149 (234)
                      ....+|+++|.+..++.++++++++.+|++.|.+++++.+||+|++|+++|+|+.+|+.+........ .          
T Consensus        11 l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~~~~-~----------   79 (159)
T 1yav_A           11 LLEATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLERI-E----------   79 (159)
T ss_dssp             CTTCBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBCSSSB-C----------
T ss_pred             HhHhhHHHHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECCCCCEEEEeEHHHHHHHhhhhccc-c----------
Confidence            34678999998644688999999999999999999999999999889999999999998764321100 0          


Q ss_pred             hhhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHhhhh
Q 026712          150 TWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIKRD  229 (234)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~~~~  229 (234)
                                 .......++.++|.++++++.+++++.+|++.|.++++  +||+|++|+++|+||..|+++.+.+...+
T Consensus        80 -----------~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~~g~~vGiit~~dil~~~~~~~~~  146 (159)
T 1yav_A           80 -----------FEKLDQITVEEVMLTDIPRLHINDPIMKGFGMVINNGF--VCVENDEQVFEGIFTRRVVLKELNKHIRS  146 (159)
T ss_dssp             -----------GGGTTTSBHHHHSBCSCCEEETTSBHHHHHHHTTTCSE--EEEECTTCBEEEEEEHHHHHHHHHHHC--
T ss_pred             -----------hhhhccCCHHHhcCCCCceEcCCCCHHHHHHHHHhCCE--EEEEeCCCeEEEEEEHHHHHHHHHHHHHh
Confidence                       00124578999999999999999999999999998876  99999889999999999999998876544

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=99.82  E-value=1e-19  Score=141.59  Aligned_cols=151  Identities=22%  Similarity=0.319  Sum_probs=114.6

Q ss_pred             cCccccccccccCCC--ceee--cCCCCHHHHHHHHHhCCCCeeEEE--cCCCcEEEEEehHHHhhhhccCCC---CCCC
Q 026712           70 NGTYTVGDFMTKKED--LHAV--KTTTTVDEALERLVEKRITGFPVI--DDDWKLVGVVSDYDLLALDSISGG---NQND  140 (234)
Q Consensus        70 ~~~~~v~~im~~~~~--~~~v--~~~~~v~~a~~~~~~~~~~~~pVv--d~~~~~~Givt~~dl~~~~~~~~~---~~~~  140 (234)
                      ....+|+++|.+..+  +.++  .+++++.+|+++|.+++++.+||+  |++|+++|+|+..|+.+.+.....   ....
T Consensus         8 ~~~~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~~~lvGiit~~dl~~~~~~~~~~~~~~~~   87 (185)
T 2j9l_A            8 AHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVS   87 (185)
T ss_dssp             -CCCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCCT
T ss_pred             hccCcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCCCeEEEEEEHHHHHHHHHhhcccCCCccc
Confidence            457789999998211  7888  999999999999999999999999  778999999999999876432100   0000


Q ss_pred             CC--CCCCccchhhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHH
Q 026712          141 TS--LFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGN  218 (234)
Q Consensus       141 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~d  218 (234)
                      ..  .+.......        ........++.++|.++++++.+++++.+|++.|.+++.+++||+| +|+++|+||..|
T Consensus        88 ~~~~~~~~~~~~~--------~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd-~g~~vGiit~~d  158 (185)
T 2j9l_A           88 TSIIYFTEHSPPL--------PPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKD  158 (185)
T ss_dssp             TCEEECSSSCCCC--------CTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHH
T ss_pred             cceeecccCCccc--------ccccccCccHHHhhCcCCeEeCCCCCHHHHHHHHHhCCCcEEEEEE-CCEEEEEEEHHH
Confidence            00  000000000        0001245689999999999999999999999999999999999999 899999999999


Q ss_pred             HHHHHHHhhhh
Q 026712          219 VVRAALQIKRD  229 (234)
Q Consensus       219 ll~~l~~~~~~  229 (234)
                      |++.+.+....
T Consensus       159 ll~~l~~~~~~  169 (185)
T 2j9l_A          159 VLKHIAQMANQ  169 (185)
T ss_dssp             HHHHHHHHCC-
T ss_pred             HHHHHHHhhcc
Confidence            99999877554

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=99.82  E-value=1.1e-19  Score=151.64  Aligned_cols=124  Identities=24%  Similarity=0.360  Sum_probs=113.4

Q ss_pred             cCccccccccccCCCceeecCCCCHHHHHHHHHhC-----CCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCC
Q 026712           70 NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEK-----RITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLF  144 (234)
Q Consensus        70 ~~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~-----~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~  144 (234)
                      ....+++++|++  +++++++++++.+|++.|.+.     +++.+||+|++|+++|+||.+|+++.              
T Consensus       134 ~~~~~v~~iM~~--~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~~~lvGivt~~dll~~--------------  197 (286)
T 2oux_A          134 YEDETAGAIMTT--EFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVN--------------  197 (286)
T ss_dssp             SCTTBHHHHCBS--CCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTTS--------------
T ss_pred             CChHHHHHhCCC--CceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCCCeEEEEEEHHHHHcC--------------
Confidence            346789999998  899999999999999999986     78889999998999999999999863              


Q ss_pred             CCccchhhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHH
Q 026712          145 PNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAAL  224 (234)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~  224 (234)
                                         ....++.++|.++++++.+++++.+|++.|.+++.+.+||||++|+++|+||..|+++.+.
T Consensus       198 -------------------~~~~~v~~im~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIT~~Dil~~i~  258 (286)
T 2oux_A          198 -------------------DDDTLIADILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVID  258 (286)
T ss_dssp             -------------------CTTSBHHHHSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred             -------------------CCCCcHHHHcCCCCeeecCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHH
Confidence                               2457899999999999999999999999999999999999998899999999999999988


Q ss_pred             Hhhh
Q 026712          225 QIKR  228 (234)
Q Consensus       225 ~~~~  228 (234)
                      +...
T Consensus       259 ~e~~  262 (286)
T 2oux_A          259 DEAA  262 (286)
T ss_dssp             HHHH
T ss_pred             HHhH
Confidence            7654

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=99.81  E-value=3.6e-19  Score=147.95  Aligned_cols=123  Identities=32%  Similarity=0.440  Sum_probs=109.2

Q ss_pred             CccccccccccCCCceeecCCCCHHHHHHHHHhC-----CCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCC
Q 026712           71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEK-----RITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFP  145 (234)
Q Consensus        71 ~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~-----~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~  145 (234)
                      ...+++++|++  +++++++++++.+|++.|.+.     ++..+||+|++|+++|+||.+|++..               
T Consensus       133 ~~~~v~~iM~~--~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~---------------  195 (278)
T 2yvy_A          133 EEDEAGGLMTP--EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA---------------  195 (278)
T ss_dssp             CTTBGGGTCBS--CCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTTCBEEEEEEHHHHHHS---------------
T ss_pred             CcchHHhhcCC--CceEECCCCcHHHHHHHHHHccCCccceeEEEEECCCCCEEEEEEHHHHhcC---------------
Confidence            35689999998  899999999999999999886     78999999988999999999999863               


Q ss_pred             CccchhhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHH
Q 026712          146 NVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQ  225 (234)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~  225 (234)
                                        ....++.++|.++++++++++++.+|++.|.+++.+.+||||++|+++|+||..|+++.+.+
T Consensus       196 ------------------~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivT~~Dil~~i~~  257 (278)
T 2yvy_A          196 ------------------DPRTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEA  257 (278)
T ss_dssp             ------------------CTTCBSTTTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHC--
T ss_pred             ------------------CCCCcHHHHhCCCCeEEeCCCCHHHHHHHHHhcCCCEEEEEeCCCeEEEEEEHHHHHHHHHH
Confidence                              24578999999999999999999999999999999999999988999999999999998876


Q ss_pred             hhh
Q 026712          226 IKR  228 (234)
Q Consensus       226 ~~~  228 (234)
                      ...
T Consensus       258 e~~  260 (278)
T 2yvy_A          258 EAT  260 (278)
T ss_dssp             ---
T ss_pred             HhH
Confidence            543

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.80  E-value=3e-19  Score=149.04  Aligned_cols=135  Identities=22%  Similarity=0.357  Sum_probs=115.5

Q ss_pred             CccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccch
Q 026712           71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNST  150 (234)
Q Consensus        71 ~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~  150 (234)
                      ...+++++|.+  ++.++++++++.++++.|.+++++.+||+|++|+++|+||.+|+++.+..                .
T Consensus       154 ~~~~v~~~m~~--~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~----------------~  215 (296)
T 3ddj_A          154 EIFPVKVFMST--KVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAK----------------A  215 (296)
T ss_dssp             CCCBHHHHSBC--SCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHH----------------H
T ss_pred             ccccHHHhhcC--CCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHH----------------H
Confidence            45589999987  89999999999999999999999999999999999999999999876320                0


Q ss_pred             hhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHhhh
Q 026712          151 WKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIKR  228 (234)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~~~  228 (234)
                      |.....     ......++.++|.++++++.+++++.+|++.|.+++++++||+|++|+++|+||+.||++++.+...
T Consensus       216 ~~~~~~-----~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~Dil~~l~~~~~  288 (296)
T 3ddj_A          216 VDKLDP-----DYFYGKVVKDVMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALHHILV  288 (296)
T ss_dssp             HHHTCT-----HHHHTCBHHHHSBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHHH
T ss_pred             HhhcCh-----hhhcCcCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEcHHHHHHHHHHHhc
Confidence            000000     1124578999999999999999999999999999999999999988999999999999999987654

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=99.79  E-value=6.8e-19  Score=143.39  Aligned_cols=151  Identities=19%  Similarity=0.235  Sum_probs=109.1

Q ss_pred             ccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCC-------------
Q 026712           72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQ-------------  138 (234)
Q Consensus        72 ~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~-------------  138 (234)
                      ..+|+++|.+  ++.++.+++++.+|+++|.+++++.+||+|++|+++|+||..|+.+.+.......             
T Consensus         6 ~~~v~~im~~--~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~l~Giit~~di~~~~~~~~~~~~~~~~~~~~~~v~   83 (245)
T 3l2b_A            6 KLKVEDLEMD--KIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITATYMDIWDSNILAKSATSLDNIL   83 (245)
T ss_dssp             CCBGGGSCCB--CCCCBCTTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHHCCCCTTHHHHTTCCHHHHH
T ss_pred             cCcHHHhcCC--CCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHHhhhhhhhhhccCCHHHHH
Confidence            5589999998  8999999999999999999999999999999899999999999998753221100             


Q ss_pred             ----------------CCCC----------CCCCc--------cchhh--------------------------------
Q 026712          139 ----------------NDTS----------LFPNV--------NSTWK--------------------------------  152 (234)
Q Consensus       139 ----------------~~~~----------~~~~~--------~~~~~--------------------------------  152 (234)
                                      ..+.          +....        +..+.                                
T Consensus        84 ~~l~~~~l~~~~~~~~~~g~~~i~a~~~~~~~~~~~~~~ivIvgdr~~~~~~~i~~~~~~liit~~~~~~~~v~~~a~~~  163 (245)
T 3l2b_A           84 DTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISEGDIAIAGDRAEIQAELIELKVSLLIVTGGHTPSKEIIELAKKN  163 (245)
T ss_dssp             HHTTCEEEECCTTCCCCCSCEEECCSCGGGGGGTCCTTCEEEECSCHHHHHHHHHTTCSEEEECTTCCCCHHHHHHHHHH
T ss_pred             HHhCCEEEeccCCcceeeeeEEEEeCChHHHHhcCCCCCEEEECCCHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHHHc
Confidence                            0000          00000        00000                                


Q ss_pred             -------hhHHHHHHHhhcCCCccccccc-CCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHH
Q 026712          153 -------TFNELQRLLSKTNGKVVGDLMT-PAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAAL  224 (234)
Q Consensus       153 -------~~~~~~~~~~~~~~~~v~~im~-~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~  224 (234)
                             .+..+..........++.++|+ ++++++.+++++.++++.|.+++++++||+|++|+++|+||.+|+++...
T Consensus       164 ~~~~i~t~~d~~~~~~~~~~~~~v~~im~~~~~~~~~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dll~~~~  243 (245)
T 3l2b_A          164 NITVITTPHDSFTASRLIVQSLPVDYVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIARFHLISTHK  243 (245)
T ss_dssp             TCEEEECSSCHHHHHHHGGGGSBHHHHSBCTTCCCEETTSBHHHHHHHHHHHCCSEEEEECTTCBEEEEEECC-------
T ss_pred             CCeEEEeCCChHHHHHHHhcCCceeeEecCCccEEECCCCcHHHHHHHHHhcCCceEEEEcCCCeEEEEEEHHHhhchhh
Confidence                   0011112222234578999999 89999999999999999999999999999998899999999999998754

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.79  E-value=1.2e-18  Score=147.09  Aligned_cols=128  Identities=23%  Similarity=0.374  Sum_probs=112.6

Q ss_pred             Cccccccc---cccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCc
Q 026712           71 GTYTVGDF---MTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNV  147 (234)
Q Consensus        71 ~~~~v~~i---m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~  147 (234)
                      ...+++++   |.+  ++.++.+++++.+|++.|.+++++.+||+|++|+++|+||.+|+++.+....            
T Consensus       185 ~~~~v~~~~~~m~~--~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~------------  250 (323)
T 3t4n_C          185 LKIPIGDLNIITQD--NMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGI------------  250 (323)
T ss_dssp             CCSBGGGTTCSBCT--TCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEETTHHHHHHHTTH------------
T ss_pred             hhCcHHHcCCCCCC--CcEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHHHHHHhhch------------
Confidence            35588999   877  7999999999999999999999999999999999999999999988642100            


Q ss_pred             cchhhhhHHHHHHHhhcCCCcccccccC------CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712          148 NSTWKTFNELQRLLSKTNGKVVGDLMTP------APLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR  221 (234)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~v~~im~~------~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~  221 (234)
                                    ......++.++|.+      +++++.+++++.++++.|.+++++++||+|++|+++|+||..||++
T Consensus       251 --------------~~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~l~Giit~~Dil~  316 (323)
T 3t4n_C          251 --------------YNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILK  316 (323)
T ss_dssp             --------------HHHTTSBHHHHGGGSCTTCCCCEEECTTCBHHHHHHHHHHSCCCEEEEECTTSBEEEEEEHHHHHH
T ss_pred             --------------hhhccCCHHHHHhhccccCCCCEEECCCCCHHHHHHHHHHhCCCEEEEECCCCcEEEEEEHHHHHH
Confidence                          01235689999987      7899999999999999999999999999998899999999999999


Q ss_pred             HHHHh
Q 026712          222 AALQI  226 (234)
Q Consensus       222 ~l~~~  226 (234)
                      ++...
T Consensus       317 ~l~~~  321 (323)
T 3t4n_C          317 YILLG  321 (323)
T ss_dssp             HHHHC
T ss_pred             HHHhc
Confidence            99865

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=99.78  E-value=3.4e-18  Score=139.75  Aligned_cols=154  Identities=21%  Similarity=0.292  Sum_probs=110.9

Q ss_pred             cCccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCC--CcEEEEEehHHHhhhhccCC---CC--CC---
Q 026712           70 NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDD--WKLVGVVSDYDLLALDSISG---GN--QN---  139 (234)
Q Consensus        70 ~~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~--~~~~Givt~~dl~~~~~~~~---~~--~~---  139 (234)
                      ...++|+++|.+  +++++.+++++.+|.++|.+++++.+||||++  ++++|+|+..||++++....   ..  ..   
T Consensus        10 ~~~~~v~diMt~--~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~~~~~~~~~~~~~~~~   87 (250)
T 2d4z_A           10 KYNIQVGDIMVR--DVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPAAAAE   87 (250)
T ss_dssp             CSSCBTTSSSBS--SCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCCCC
T ss_pred             cCCCChHHhcCC--CCeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHHHHhhhhhhhhhhhhhc
Confidence            457789999998  89999999999999999999999999999974  68999999999987643210   00  00   


Q ss_pred             ---------C--------CC--CCCCcc----------------chhhh-------------------------------
Q 026712          140 ---------D--------TS--LFPNVN----------------STWKT-------------------------------  153 (234)
Q Consensus       140 ---------~--------~~--~~~~~~----------------~~~~~-------------------------------  153 (234)
                               .        ..  .+.+..                ..+++                               
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (250)
T 2d4z_A           88 ADEEGRNGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTGQVASRF  167 (250)
T ss_dssp             BCCC---------------------------------------------------------------------------C
T ss_pred             ccccccccccccccccCCcceeeeccccccccccccCccccCCcccCCccccccccccccccccccccccccccccCccc
Confidence                     0        00  000000                00000                               


Q ss_pred             -----hHHHHHHHhhcCCCcc--c-ccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHH
Q 026712          154 -----FNELQRLLSKTNGKVV--G-DLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQ  225 (234)
Q Consensus       154 -----~~~~~~~~~~~~~~~v--~-~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~  225 (234)
                           ..+...........+|  . .+|++.++++.+++++.+|..+|.+.|++++||++ .|+++||||++||++++..
T Consensus       168 ~~~i~~~~~~~~~~~~l~~~Vdl~~~~md~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~-~GrLVGIVTrkDl~kai~~  246 (250)
T 2d4z_A          168 EEMLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS-MGKLVGVVALAEIQAAIEG  246 (250)
T ss_dssp             CSCCBHHHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHC
T ss_pred             ccccChhhhhhHHHHhcCceeccccccccCCCeEECCCCcHHHHHHHHHHhCCeEEEEEE-CCEEEEEEEHHHHHHHHHH
Confidence                 0000011111233455  3 47999999999999999999999999999999998 7999999999999999875


Q ss_pred             h
Q 026712          226 I  226 (234)
Q Consensus       226 ~  226 (234)
                      .
T Consensus       247 ~  247 (250)
T 2d4z_A          247 S  247 (250)
T ss_dssp             -
T ss_pred             H
Confidence            4

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.77  E-value=9.2e-19  Score=144.47  Aligned_cols=134  Identities=18%  Similarity=0.368  Sum_probs=109.1

Q ss_pred             CccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccch
Q 026712           71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNST  150 (234)
Q Consensus        71 ~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~  150 (234)
                      ...+++++|.+  ++.++++++++.++++.|.+++.+.+||+ ++|+++|+||.+|+++.+...              ..
T Consensus       146 ~~~~v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv-~~~~~~Givt~~dl~~~~~~~--------------~~  208 (280)
T 3kh5_A          146 ENEVIDDYITR--DVIVATPGERLKDVARTMVRNGFRRLPVV-SEGRLVGIITSTDFIKLLGSD--------------WA  208 (280)
T ss_dssp             TTCBSGGGCBC--SCCCBCTTCBHHHHHHHHHHHTCSEEEEE-ETTEEEEEEEHHHHHHHHTSH--------------HH
T ss_pred             CCCCHHHHhCC--CCeEECCCCcHHHHHHHHHHcCCCEEEEE-ECCEEEEEEEHHHHHHHHhhh--------------hh
Confidence            34589999987  88999999999999999999999999999 578999999999998764210              00


Q ss_pred             hhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHH
Q 026712          151 WKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAA  223 (234)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l  223 (234)
                      |..+..  .........++.++|.++++++.+++++.+|++.|.+++++++||+|++|+++|+||.+||++++
T Consensus       209 ~~~~~~--~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~~~Givt~~dil~~l  279 (280)
T 3kh5_A          209 FNHMQT--GNVREITNVRMEEIMKRDVITAKEGDKLKKIAEIMVTNDIGALPVVDENLRIKGIITEKDVLKYF  279 (280)
T ss_dssp             HHHHHS--CCTHHHHHCBHHHHSBSSCCCBCTTCBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHGGGG
T ss_pred             hhhhcc--cchhhhhCCcHHHHhcCCCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCeEEEEEeHHHHHHhh
Confidence            000000  00001134689999999999999999999999999999999999999888999999999999865

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.76  E-value=2.2e-18  Score=142.55  Aligned_cols=151  Identities=21%  Similarity=0.324  Sum_probs=110.4

Q ss_pred             CccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCC-CCCCCCCCc--
Q 026712           71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQ-NDTSLFPNV--  147 (234)
Q Consensus        71 ~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~-~~~~~~~~~--  147 (234)
                      ...+++++|.+  ++.++++++++.++.+.|.+++++.+||+|++|+++|+++..|+++......... ....+....  
T Consensus       124 ~~~~v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~~  201 (282)
T 2yzq_A          124 KGVEIEPYYQR--YVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTELAASSEEEW  201 (282)
T ss_dssp             GGCBSTTTSBS--CCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGGGCGGGCC---------------
T ss_pred             ccCcHHHHhCC--CCEEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHhhhhhhhhhhccchhhhhhhhhh
Confidence            35689999987  7899999999999999999999999999998899999999999983211000000 000000000  


Q ss_pred             --cchhhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHH
Q 026712          148 --NSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQ  225 (234)
Q Consensus       148 --~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~  225 (234)
                        ...+..+  ...........++.++|.++++++.+++++.+|+++|.+++++++||+|++|+++|+||++|+++++.+
T Consensus       202 ~~~~~~~~~--~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGiit~~Dil~~~~~  279 (282)
T 2yzq_A          202 ILESHPTLL--FEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKVLVK  279 (282)
T ss_dssp             -------------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEEEEEEEHHHHGGGGCC
T ss_pred             hcccchHHH--HhHhhhhhccCCHHHhcCCCCceeCCCCCHHHHHHHHHHcCcceeEEECCCCCEEEEEeHHHHHHHHHh
Confidence              0000000  001111234678999999999999999999999999999999999999977899999999999987754

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.76  E-value=9.6e-18  Score=139.91  Aligned_cols=124  Identities=27%  Similarity=0.390  Sum_probs=112.4

Q ss_pred             ccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchh
Q 026712           72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTW  151 (234)
Q Consensus        72 ~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~  151 (234)
                      ..+++++|.+  ++.++.+++++.+|++.|.+++++.+||+|++|+++|++|.+|+++.+..                  
T Consensus        92 ~~~v~~im~~--~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~lvGivt~~dl~~~~~~------------------  151 (296)
T 3ddj_A           92 TTPIIDYMTP--NPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYKD------------------  151 (296)
T ss_dssp             TSBGGGTSEE--SCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHGGGGGG------------------
T ss_pred             cccHHHhccC--CCEEEcCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHhhhc------------------
Confidence            5689999998  89999999999999999999999999999989999999999999875321                  


Q ss_pred             hhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHh
Q 026712          152 KTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQI  226 (234)
Q Consensus       152 ~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~  226 (234)
                                 .....++.++|.++++++.+++++.++++.|.+++.+++||+|++|+++|+||..|+++.+.+.
T Consensus       152 -----------~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~  215 (296)
T 3ddj_A          152 -----------LDEIFPVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKA  215 (296)
T ss_dssp             -----------SCCCCBHHHHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHH
T ss_pred             -----------ccccccHHHhhcCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHHH
Confidence                       1234689999999999999999999999999999999999999889999999999999998743

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=99.76  E-value=6.3e-18  Score=150.15  Aligned_cols=122  Identities=32%  Similarity=0.444  Sum_probs=111.6

Q ss_pred             CccccccccccCCCceeecCCCCHHHHHHHHHhC-----CCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCC
Q 026712           71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEK-----RITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFP  145 (234)
Q Consensus        71 ~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~-----~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~  145 (234)
                      ...+++++|++  +++++++++++.++.+.|.+.     +++.+||+|++++++|+||.+|++..               
T Consensus       153 ~~~~v~~iM~~--~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~~~lvGiVt~~Dll~~---------------  215 (473)
T 2zy9_A          153 EEDEAGGLMTP--EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA---------------  215 (473)
T ss_dssp             CTTBSTTTCBS--CEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTTSBEEEEEEHHHHHHS---------------
T ss_pred             CCCCHHHhCCC--CceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCCCcEEEEEEHHHHhcC---------------
Confidence            46689999998  899999999999999999875     57899999988999999999999863               


Q ss_pred             CccchhhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHH
Q 026712          146 NVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQ  225 (234)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~  225 (234)
                                        ..+.++.++|+++++++++++++.++++.|.+++.+.+||||++|+++|+||..|+++.+.+
T Consensus       216 ------------------~~~~~v~dim~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe~g~lvGiIT~~Dil~~i~~  277 (473)
T 2zy9_A          216 ------------------DPRTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEA  277 (473)
T ss_dssp             ------------------CTTSBGGGTSBSSCCCEESSSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHH
T ss_pred             ------------------CCCCcHHHHhCCCCeEEeCCCcHHHHHHHHHhcCCcEEEEEcCCCEEEEEEehHhhHHHHHH
Confidence                              24578999999999999999999999999999999999999999999999999999999876


Q ss_pred             hh
Q 026712          226 IK  227 (234)
Q Consensus       226 ~~  227 (234)
                      ..
T Consensus       278 e~  279 (473)
T 2zy9_A          278 EA  279 (473)
T ss_dssp             HH
T ss_pred             Hh
Confidence            53

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.75  E-value=2.2e-17  Score=136.22  Aligned_cols=123  Identities=27%  Similarity=0.505  Sum_probs=109.9

Q ss_pred             ccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchh
Q 026712           72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTW  151 (234)
Q Consensus        72 ~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~  151 (234)
                      ..+++++|.+  ++.++++++++.+|++.|.+++++.+||+|++|+++|++|.+|+.+.+....                
T Consensus        83 ~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~----------------  144 (280)
T 3kh5_A           83 NEPVREIMEE--NVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVIRALLDKI----------------  144 (280)
T ss_dssp             TSBGGGTSBC--SCCCEETTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHGGGS----------------
T ss_pred             hhhHHHhcCC--CCEEECCCCCHHHHHHHHHhCCCCEEEEEcCCCEEEEEEEHHHHHHHHhhcC----------------
Confidence            4589999998  8999999999999999999999999999999999999999999987632111                


Q ss_pred             hhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHH
Q 026712          152 KTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQ  225 (234)
Q Consensus       152 ~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~  225 (234)
                                  ....++.++|.++++++.+++++.++++.|.+++.+++||++ +|+++|+||..|+++.+.+
T Consensus       145 ------------~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~Givt~~dl~~~~~~  205 (280)
T 3kh5_A          145 ------------DENEVIDDYITRDVIVATPGERLKDVARTMVRNGFRRLPVVS-EGRLVGIITSTDFIKLLGS  205 (280)
T ss_dssp             ------------CTTCBSGGGCBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHTS
T ss_pred             ------------CCCCCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHhh
Confidence                        223589999999999999999999999999999999999995 8999999999999998753

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.74  E-value=1.8e-17  Score=140.51  Aligned_cols=129  Identities=19%  Similarity=0.242  Sum_probs=110.9

Q ss_pred             cccccc---ccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCcc
Q 026712           72 TYTVGD---FMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVN  148 (234)
Q Consensus        72 ~~~v~~---im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~  148 (234)
                      ..++++   +|.+  ++.++++++++.+|++.|.+++.+.+||+|++|+++|+||.+|+++.+.....            
T Consensus       181 ~~~v~~l~~~m~~--~~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd~~~~~~Giit~~dl~~~~~~~~~------------  246 (334)
T 2qrd_G          181 RVPLNQMTIGTWS--NLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDY------------  246 (334)
T ss_dssp             CCBGGGSSCSBCS--SCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEETHHHHHHHTTSCG------------
T ss_pred             hCcHHHhCCcccC--CceEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHHHHhhcccc------------
Confidence            457888   4877  88999999999999999999999999999988999999999999876421110            


Q ss_pred             chhhhhHHHHHHHhhcCCCcccccccC------CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHH
Q 026712          149 STWKTFNELQRLLSKTNGKVVGDLMTP------APLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRA  222 (234)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~v~~im~~------~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~  222 (234)
                                    .....++.++|..      +++++.+++++.+|++.|.+++++++||+|++|+++|+||..||++.
T Consensus       247 --------------~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~Giit~~dil~~  312 (334)
T 2qrd_G          247 --------------SNLDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNY  312 (334)
T ss_dssp             --------------GGGGSBHHHHHTTCCTTCCCCCEECTTCBHHHHHHHHHHSCCCEEEEECTTCBEEEEEEHHHHHHH
T ss_pred             --------------ccccCcHHHHHhcccccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHHHHH
Confidence                          0124678888874      79999999999999999999999999999988999999999999999


Q ss_pred             HHHhhh
Q 026712          223 ALQIKR  228 (234)
Q Consensus       223 l~~~~~  228 (234)
                      +.+...
T Consensus       313 ~~~~~~  318 (334)
T 2qrd_G          313 IIYDKT  318 (334)
T ss_dssp             HHSCCC
T ss_pred             HHhccc
Confidence            886543

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=99.74  E-value=6.7e-18  Score=152.04  Aligned_cols=128  Identities=19%  Similarity=0.210  Sum_probs=111.9

Q ss_pred             cCccccccccccCCCceeecCC-CCHHHHHHHHHhCCCCeeEEEc-CCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCc
Q 026712           70 NGTYTVGDFMTKKEDLHAVKTT-TTVDEALERLVEKRITGFPVID-DDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNV  147 (234)
Q Consensus        70 ~~~~~v~~im~~~~~~~~v~~~-~~v~~a~~~~~~~~~~~~pVvd-~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~  147 (234)
                      +...+|+++|.+  +++++.++ +++.+|+++|.+++++.+||+| ++++++|+||.+||++.+....            
T Consensus       381 l~~~~V~diM~~--~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~~~~------------  446 (527)
T 3pc3_A          381 WWSLAIAELELP--APPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSMN------------  446 (527)
T ss_dssp             TTTSBGGGGCCC--CCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHHHHHHHC------------
T ss_pred             ccCCcHHHhCcC--CCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCCCEEEEEEEHHHHHHHHHhcc------------
Confidence            557899999998  89999999 9999999999999999999999 7899999999999987632110            


Q ss_pred             cchhhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCC----CcEEEEEehHHHHHHH
Q 026712          148 NSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGY----GKLVGLITRGNVVRAA  223 (234)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~----~~~vGiit~~dll~~l  223 (234)
                                     .....+|.++|+++++++.+++++.+++++|.++++  +||||++    |+++||||+.||++++
T Consensus       447 ---------------~~~~~~V~~im~~~~~~v~~~~~l~~a~~~m~~~~~--~pVVd~~~~~~g~lvGIVT~~Dll~~l  509 (527)
T 3pc3_A          447 ---------------RQQSDPAIKALNKRVIRLNESEILGKLARVLEVDPS--VLILGKNPAGKVELKALATKLDVTTFI  509 (527)
T ss_dssp             ---------------CCTTSBGGGGEETTCCEEETTSBHHHHHHHHTTCSE--EEEEEECSSSCEEEEEEEEHHHHHHHH
T ss_pred             ---------------CcCCCcHHHHhcCCCeEECCCCcHHHHHHHHhhCCE--EEEEeCCcccCCeEEEEEEHHHHHHHH
Confidence                           134578999999999999999999999999976664  7999974    8999999999999999


Q ss_pred             HHhhh
Q 026712          224 LQIKR  228 (234)
Q Consensus       224 ~~~~~  228 (234)
                      .+...
T Consensus       510 ~~~~~  514 (527)
T 3pc3_A          510 AAGKQ  514 (527)
T ss_dssp             HTCCC
T ss_pred             Hhccc
Confidence            98753

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.72  E-value=1e-17  Score=138.52  Aligned_cols=118  Identities=34%  Similarity=0.511  Sum_probs=89.8

Q ss_pred             cccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhh
Q 026712           73 YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWK  152 (234)
Q Consensus        73 ~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~  152 (234)
                      ++++++|.+  ++.++++++++.+|+++|.+++++.+||+|++|+++|+++.+|+++.                      
T Consensus         1 m~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~pV~d~~~~~~Giv~~~dl~~~----------------------   56 (282)
T 2yzq_A            1 MRVKTIMTQ--NPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRILVN----------------------   56 (282)
T ss_dssp             CBHHHHSEE--SCCCEESSCC------------CCEEEEECTTCCEEEEEESSCC-------------------------
T ss_pred             CchHHhccC--CCeEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhh----------------------
Confidence            368899998  89999999999999999999999999999988999999999999854                      


Q ss_pred             hhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH-HHHH
Q 026712          153 TFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR-AALQ  225 (234)
Q Consensus       153 ~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~-~l~~  225 (234)
                                 ....++.++|.++++++.+++++.++++.|.+++.+.+||+|++|+++|+||..|+++ .+.+
T Consensus        57 -----------~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~~  119 (282)
T 2yzq_A           57 -----------PDEEQLAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAK  119 (282)
T ss_dssp             ------------------CCCBSCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTT
T ss_pred             -----------hccCCHHHHcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhc
Confidence                       1246799999988999999999999999999999999999998889999999999998 6653

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=99.72  E-value=3.6e-18  Score=156.72  Aligned_cols=154  Identities=16%  Similarity=0.108  Sum_probs=108.3

Q ss_pred             CccccccccccCCCceeecCCCCHHHHHHHHH-hCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCC---C
Q 026712           71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLV-EKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFP---N  146 (234)
Q Consensus        71 ~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~-~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~---~  146 (234)
                      ...+|+|+|++.+++.+++++++++|+.+.|. +++++.+||+|++++++|+|+.+|+.+.+..............   .
T Consensus       451 ~~~~V~diM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~~~~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~  530 (632)
T 3org_A          451 PEMTAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDANGYLLGAISRKEIVDRLQHVLEDVPEPIAGHRTLV  530 (632)
T ss_dssp             TTSBHHHHCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCTTCBBCCEESHHHHTTTTTTC---------------
T ss_pred             ccCcHHHHhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEecCCeEEEEEEHHHHHHHHHHHhhhccccccccccee
Confidence            57899999994338999999999999999999 7999999999998999999999999986533211111000000   0


Q ss_pred             ccchhhhhHHHHHHHhh-----------------cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCc
Q 026712          147 VNSTWKTFNELQRLLSK-----------------TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGK  209 (234)
Q Consensus       147 ~~~~~~~~~~~~~~~~~-----------------~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~  209 (234)
                      ..+.++..+.+......                 ....++.++|+++++++++++++.++++.|.+++.+++||+ ++|+
T Consensus       531 ~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~~pitV~~~~~l~ea~~~M~~~~i~~lpVv-e~G~  609 (632)
T 3org_A          531 LLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVT-ERGK  609 (632)
T ss_dssp             ----------------------------------------CCSCCCCCCEEETTCBHHHHHHHHHHTCCSEEEEE-ETTE
T ss_pred             ccCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhcCCCceecCCCcHHHHHHHHHhcCCCEEEEE-ECCE
Confidence            00000000000111000                 12235899999999999999999999999999999999999 5899


Q ss_pred             EEEEEehHHHHHHHHH
Q 026712          210 LVGLITRGNVVRAALQ  225 (234)
Q Consensus       210 ~vGiit~~dll~~l~~  225 (234)
                      ++|+||++|+++.+.+
T Consensus       610 lvGIVT~~Dll~~~~~  625 (632)
T 3org_A          610 LVGIVEREDVAYGYSN  625 (632)
T ss_dssp             EEEEEEGGGTEECCCC
T ss_pred             EEEEEehhhHHHHHhh
Confidence            9999999999876554

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.71  E-value=8.8e-17  Score=136.13  Aligned_cols=127  Identities=24%  Similarity=0.345  Sum_probs=107.0

Q ss_pred             cccccc--cc-cCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccc
Q 026712           73 YTVGDF--MT-KKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNS  149 (234)
Q Consensus        73 ~~v~~i--m~-~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~  149 (234)
                      .+++++  |. +  ++.++.+++++.++.+.|.+++.+.+||+|++|+++|+||.+|+++........            
T Consensus       190 ~~v~~~~v~~~~--~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~l~Giit~~dl~~~~~~~~~~------------  255 (330)
T 2v8q_E          190 KSLEELQIGTYA--NIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYN------------  255 (330)
T ss_dssp             SBHHHHTCSBCS--SCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEGGGTGGGGGSSCCC------------
T ss_pred             CCHHHhcccCcC--CceEECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEHHHHHHHHhccccc------------
Confidence            345555  54 4  789999999999999999999999999999889999999999999864322110            


Q ss_pred             hhhhhHHHHHHHhhcCCCcccccc------cCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHH
Q 026712          150 TWKTFNELQRLLSKTNGKVVGDLM------TPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAA  223 (234)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~v~~im------~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l  223 (234)
                                    ....++.++|      .++++++.+++++.++++.|.+++++++||+|++|+++|+||..|+++++
T Consensus       256 --------------~~~~~v~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~l~Giit~~Dil~~~  321 (330)
T 2v8q_E          256 --------------NLDVSVTKALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQAL  321 (330)
T ss_dssp             --------------CCSSBHHHHGGGCCSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred             --------------cccCcHHHHHhccccccCCCeEECCCCcHHHHHHHHHHCCCcEEEEEcCCCcEEEEEeHHHHHHHH
Confidence                          1135667776      57899999999999999999999999999999889999999999999998


Q ss_pred             HHhh
Q 026712          224 LQIK  227 (234)
Q Consensus       224 ~~~~  227 (234)
                      .+..
T Consensus       322 ~~~~  325 (330)
T 2v8q_E          322 VLTG  325 (330)
T ss_dssp             HSSC
T ss_pred             Hhhc
Confidence            8763

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=99.67  E-value=3.2e-16  Score=140.15  Aligned_cols=118  Identities=26%  Similarity=0.398  Sum_probs=106.5

Q ss_pred             ccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcC--CCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchh
Q 026712           74 TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDD--DWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTW  151 (234)
Q Consensus        74 ~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~--~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~  151 (234)
                      +.++.|.+  +++++++++++.++.++|.+.+++.+||+|+  +++++|+||.+|+...                     
T Consensus       114 ~~~~~m~~--d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~~~lvGiVt~rDl~~~---------------------  170 (511)
T 3usb_A          114 RSESGVIS--DPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDMRFI---------------------  170 (511)
T ss_dssp             TSSSCSSS--SCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTTCBEEEEEEHHHHTTC---------------------
T ss_pred             cccccccc--CCEEECCCCCHHHHHHHHHHcCCcEEEEEecCCCCEEEEEEEehHhhhh---------------------
Confidence            34556666  7899999999999999999999999999998  8999999999999642                     


Q ss_pred             hhhHHHHHHHhhcCCCcccccccC-CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHH
Q 026712          152 KTFNELQRLLSKTNGKVVGDLMTP-APLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQ  225 (234)
Q Consensus       152 ~~~~~~~~~~~~~~~~~v~~im~~-~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~  225 (234)
                                 .....++.++|++ +++++++++++.++++.|.+++++.+||||++|+++|+||.+|+++.+..
T Consensus       171 -----------~~~~~~V~~vM~~~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe~g~l~GiIT~~Dil~~~~~  234 (511)
T 3usb_A          171 -----------QDYSIKISDVMTKEQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVIEF  234 (511)
T ss_dssp             -----------CCSSSBHHHHCCCCCCCCEETTCCHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred             -----------ccCCCcHHHhcccCCCEEECCCCCHHHHHHHHHHcCCCEEEEEeCCCCEeeeccHHHHHHhhhc
Confidence                       1345789999997 89999999999999999999999999999999999999999999999865

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.67  E-value=3.6e-16  Score=131.91  Aligned_cols=126  Identities=19%  Similarity=0.268  Sum_probs=104.5

Q ss_pred             cccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCc-----EEEEEehHHHhhhhccCCCCCCCCCCCCCccc
Q 026712           75 VGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWK-----LVGVVSDYDLLALDSISGGNQNDTSLFPNVNS  149 (234)
Q Consensus        75 v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~-----~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~  149 (234)
                      +.++|.+  +++++++++++.+|++.|.+++++.+||+|+++.     ++|++|.+|+++.+......            
T Consensus       116 ~~~~~~~--~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~~~l~Givt~~di~~~l~~~~~~------------  181 (323)
T 3t4n_C          116 ALGVDQL--DTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCRE------------  181 (323)
T ss_dssp             HTTC------CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHHHHCGG------------
T ss_pred             HhCCCCC--CceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCCCCccceEEEecHHHHHHHHHhcCCc------------
Confidence            4455666  7899999999999999999999999999998775     99999999998763211100            


Q ss_pred             hhhhhHHHHHHHhhcCCCccccc---ccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHh
Q 026712          150 TWKTFNELQRLLSKTNGKVVGDL---MTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQI  226 (234)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~v~~i---m~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~  226 (234)
                                  ......++.++   |.++++++.+++++.+|++.|.+++++++||+|++|+++|+||..|+++.+.+.
T Consensus       182 ------------~~~~~~~v~~~~~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~  249 (323)
T 3t4n_C          182 ------------THFLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGG  249 (323)
T ss_dssp             ------------GGGCCSBGGGTTCSBCTTCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEETTHHHHHHHTT
T ss_pred             ------------hhhhhCcHHHcCCCCCCCcEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHHHHHHhhc
Confidence                        12345689999   888999999999999999999999999999999889999999999999987654

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.65  E-value=6.1e-16  Score=130.94  Aligned_cols=142  Identities=19%  Similarity=0.215  Sum_probs=109.6

Q ss_pred             CccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCC-CcEEEEEehHHHhhhhccCC--CCCCCCCCCCCc
Q 026712           71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDD-WKLVGVVSDYDLLALDSISG--GNQNDTSLFPNV  147 (234)
Q Consensus        71 ~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~--~~~~~~~~~~~~  147 (234)
                      ...+++++|.+..++.++++++++.+|++.|.+++++.+||+|++ ++++|+|+.+|++..+....  .......+.   
T Consensus        33 ~~~~v~dim~p~~~v~~v~~~~~v~~a~~~~~~~~~~~~pV~d~~~~~~vGivt~~Dll~~l~~~~~~~~~~~~~l~---  109 (330)
T 2v8q_E           33 KSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQIYELE---  109 (330)
T ss_dssp             HHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHTTTCCCGG---
T ss_pred             HcCcHhhhccCCCcEEEEeCCCcHHHHHHHHHHcCCcEEEEEeCCCCeEEEEEEHHHHHHHHHHHHhccccchhHHh---
Confidence            466899999443389999999999999999999999999999987 78999999999987532110  000000000   


Q ss_pred             cchhhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEehHHHHHHHHHh
Q 026712          148 NSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDG-YGKLVGLITRGNVVRAALQI  226 (234)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~-~~~~vGiit~~dll~~l~~~  226 (234)
                           ... +...     ..++.++|.++++++.+++++.++++.|.+++.+++||+|+ +|+++|+||..|+++++...
T Consensus       110 -----~~~-~~~~-----~~~~~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~dl~~~~~~~  178 (330)
T 2v8q_E          110 -----EHK-IETW-----REVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLF  178 (330)
T ss_dssp             -----GCB-HHHH-----HHHHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHHH
T ss_pred             -----hcc-HHHH-----HHHHhhcccCCceEeCCCCCHHHHHHHHHHCCCCeEEEEeCCCCcEEEEEcHHHHHHHHHHH
Confidence                 000 0000     01345778899999999999999999999999999999997 79999999999999988654

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=99.65  E-value=2.3e-15  Score=134.38  Aligned_cols=118  Identities=28%  Similarity=0.432  Sum_probs=108.5

Q ss_pred             ccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEc--CCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchh
Q 026712           74 TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVID--DDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTW  151 (234)
Q Consensus        74 ~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd--~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~  151 (234)
                      .++++|.+  ++.++++++++.+++++|.+.+++.+||+|  ++++++|+||.+|+....                    
T Consensus        91 ~~~~im~~--~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~lvGivt~~Dl~~~~--------------------  148 (491)
T 1zfj_A           91 RSENGVII--DPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFIS--------------------  148 (491)
T ss_dssp             HHTTTTSS--SCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCS--------------------
T ss_pred             hHHhcCcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCCCEEEEEEEHHHHhhhc--------------------
Confidence            46789998  899999999999999999999999999999  789999999999998631                    


Q ss_pred             hhhHHHHHHHhhcCCCcccccccC-CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHH
Q 026712          152 KTFNELQRLLSKTNGKVVGDLMTP-APLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQ  225 (234)
Q Consensus       152 ~~~~~~~~~~~~~~~~~v~~im~~-~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~  225 (234)
                                  ....++.++|++ +++++++++++.++++.|.+++.+.+||||++|+++|+||..|+++.+.+
T Consensus       149 ------------~~~~~v~~im~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGivt~~Dil~~~~~  211 (491)
T 1zfj_A          149 ------------DYNAPISEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIEF  211 (491)
T ss_dssp             ------------CSSSBTTTSCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred             ------------cCCCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHHHHHHhc
Confidence                        235789999998 89999999999999999999999999999999999999999999999875

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=99.62  E-value=2.1e-16  Score=140.89  Aligned_cols=117  Identities=21%  Similarity=0.289  Sum_probs=92.7

Q ss_pred             ccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhh
Q 026712           74 TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKT  153 (234)
Q Consensus        74 ~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (234)
                      +++++|.+  +++++++++++.++.++|.+++++.+||+|++++++|+||.+|+...                       
T Consensus        90 ~~~~~m~~--d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~~~lvGiVt~rDL~~~-----------------------  144 (496)
T 4fxs_A           90 IFEAGVVT--HPVTVRPEQTIADVMELTHYHGFAGFPVVTENNELVGIITGRDVRFV-----------------------  144 (496)
T ss_dssp             HCCC--CB--CCCCBCSSSBHHHHHHHHTSSCCCEEEEECSSSBEEEEEEHHHHTTC-----------------------
T ss_pred             cccccccc--CceEECCCCCHHHHHHHHHHcCCcEEEEEccCCEEEEEEEHHHHhhc-----------------------
Confidence            56778987  89999999999999999999999999999998999999999999632                       


Q ss_pred             hHHHHHHHhhcCCCccccccc-C-CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHH
Q 026712          154 FNELQRLLSKTNGKVVGDLMT-P-APLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAAL  224 (234)
Q Consensus       154 ~~~~~~~~~~~~~~~v~~im~-~-~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~  224 (234)
                               .....++.++|+ . +++++++++++.++++.|.+++++.+||||++|+++|+||.+|+++...
T Consensus       145 ---------~~~~~~v~diM~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~G~l~GiIT~~DIl~~~~  208 (496)
T 4fxs_A          145 ---------TDLTKSVAAVMTPKERLATVKEGATGAEVQEKMHKARVEKILVVNDEFQLKGMITAKDFHKAES  208 (496)
T ss_dssp             ---------CCTTSBGGGTSEEGGGCCEEECC----CGGGTCC---CCCEEEECTTSBCCEEECCC-----CC
T ss_pred             ---------ccCCCcHHHHhcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEeehHhHHHHhhc
Confidence                     124578999998 4 5999999999999999999999999999999999999999999998753

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.58  E-value=1e-14  Score=123.45  Aligned_cols=124  Identities=17%  Similarity=0.220  Sum_probs=101.6

Q ss_pred             ccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCc-----EEEEEehHHHhhhhccCCCCCCCCCCCCCccchhh
Q 026712           78 FMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWK-----LVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWK  152 (234)
Q Consensus        78 im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~-----~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~  152 (234)
                      +|.+..++.++.+++++.++++.|.+.+.+.+||+|+++.     ++|++|.+|+.+.+......               
T Consensus       112 im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~~~~Givt~~dl~~~~~~~~~~---------------  176 (334)
T 2qrd_G          112 IGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNCKE---------------  176 (334)
T ss_dssp             HTCSCSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEEETTTTEEEEEEEEEHHHHHHHHHHHCGG---------------
T ss_pred             hccCCCceeeeCCCCcHHHHHHHHHHCCceEEEEEeCCCCcCccceEEEeeHHHHHHHHHhhccc---------------
Confidence            4555112389999999999999999999999999997654     99999999998764211000               


Q ss_pred             hhHHHHHHHhhcCCCcccc---cccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHH
Q 026712          153 TFNELQRLLSKTNGKVVGD---LMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQ  225 (234)
Q Consensus       153 ~~~~~~~~~~~~~~~~v~~---im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~  225 (234)
                               ......++.+   +|.++++++.+++++.++++.|.+++.+++||+|++|+++|+||..|+++.+.+
T Consensus       177 ---------~~~~~~~v~~l~~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd~~~~~~Giit~~dl~~~~~~  243 (334)
T 2qrd_G          177 ---------TAMLRVPLNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQD  243 (334)
T ss_dssp             ---------GGGCCCBGGGSSCSBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEETHHHHHHHTT
T ss_pred             ---------hhhhhCcHHHhCCcccCCceEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHHHHhhc
Confidence                     0113467888   488899999999999999999999999999999988999999999999998764

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=99.58  E-value=1.5e-16  Score=142.11  Aligned_cols=119  Identities=32%  Similarity=0.476  Sum_probs=7.3

Q ss_pred             ccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhh
Q 026712           74 TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKT  153 (234)
Q Consensus        74 ~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (234)
                      +++++|.+  ++.++.+++++.+|+++|.+.+++.+||+|++++++|+||.+|+.+.                       
T Consensus        96 ~~~~iM~~--~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~lvGivt~~Dl~~~-----------------------  150 (494)
T 1vrd_A           96 KTENGIIY--DPITVTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDVRFE-----------------------  150 (494)
T ss_dssp             TC------------------------------------------------------------------------------
T ss_pred             hHhhcCcc--CCeEECCCCCHHHHHHHHHHcCceEEEEEcCCCEEEEEEEHHHHHhh-----------------------
Confidence            46788988  89999999999999999999999999999988999999999999752                       


Q ss_pred             hHHHHHHHhhcCCCcccccccC--CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHh
Q 026712          154 FNELQRLLSKTNGKVVGDLMTP--APLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQI  226 (234)
Q Consensus       154 ~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~  226 (234)
                               .....++.++|++  +++++.+++++.++++.|.+++++.+||||++|+++|+||..|+++.+...
T Consensus       151 ---------~~~~~~v~~im~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~~~~  216 (494)
T 1vrd_A          151 ---------KNLSKKIKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSVIEHP  216 (494)
T ss_dssp             -------------------------------------------------------------------CHHHHTCT
T ss_pred             ---------cCCCCcHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHhhhccc
Confidence                     0234689999997  899999999999999999999999999999999999999999999987644

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=99.56  E-value=2.3e-16  Score=140.46  Aligned_cols=118  Identities=29%  Similarity=0.373  Sum_probs=3.8

Q ss_pred             cccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhh
Q 026712           73 YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWK  152 (234)
Q Consensus        73 ~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~  152 (234)
                      .+++++|.+  +++++++++++.++.++|.+.+++.+||+| +++++|+||.+|+...                      
T Consensus        88 k~~~~~m~~--~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd-~g~lvGIVt~rDl~~~----------------------  142 (490)
T 4avf_A           88 KKHETAIVR--DPVTVTPSTKIIELLQMAREYGFSGFPVVE-QGELVGIVTGRDLRVK----------------------  142 (490)
T ss_dssp             HHCCC---------------------------------------------------------------------------
T ss_pred             cccccCccc--CceEeCCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEEEhHHhhhc----------------------
Confidence            457888987  889999999999999999999999999999 7999999999999632                      


Q ss_pred             hhHHHHHHHhhcCCCccccccc-C-CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHH
Q 026712          153 TFNELQRLLSKTNGKVVGDLMT-P-APLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQ  225 (234)
Q Consensus       153 ~~~~~~~~~~~~~~~~v~~im~-~-~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~  225 (234)
                                .....++.++|+ . +++++++++++.+++++|.+++++.+||||++|+++|+||.+|+++....
T Consensus       143 ----------~~~~~~V~~vMtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~~  207 (490)
T 4avf_A          143 ----------PNAGDTVAAIMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDENFYLRGLVTFRDIEKAKTY  207 (490)
T ss_dssp             --------------------------------------------------------------------------C
T ss_pred             ----------cccCCcHHHHhccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHhhhhccC
Confidence                      124578999998 4 69999999999999999999999999999999999999999999998643

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=99.56  E-value=2.3e-16  Score=141.02  Aligned_cols=120  Identities=23%  Similarity=0.274  Sum_probs=2.7

Q ss_pred             ccccc-cccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCC---CcEEEEEehHHHhhhhccCCCCCCCCCCCCCccc
Q 026712           74 TVGDF-MTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDD---WKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNS  149 (234)
Q Consensus        74 ~v~~i-m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~---~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~  149 (234)
                      +..++ |.+  +++++++++++.+++++|.+++++.+||+|++   ++++|+||.+|+.+.                   
T Consensus        97 ~~~e~gM~~--~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~~g~lvGiVt~~Dl~~~-------------------  155 (503)
T 1me8_A           97 KNFKAGFVV--SDSNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRDYPID-------------------  155 (503)
T ss_dssp             HTTTC---------------------------------------------------------------------------
T ss_pred             hhcccCccc--CCeEECCCCcHHHHHHHHHHcCceEEEEEECCCcCCeEEEEEEHHHHHhh-------------------
Confidence            33455 888  89999999999999999999999999999987   899999999999752                   


Q ss_pred             hhhhhHHHHHHHhhcCCCcccccccCC--CeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHh
Q 026712          150 TWKTFNELQRLLSKTNGKVVGDLMTPA--PLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQI  226 (234)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~v~~im~~~--~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~  226 (234)
                                  ......++.++|+++  ++++++++++.+++++|.+++++.+||||++|+++|+||.+||++.+...
T Consensus       156 ------------~~~~~~~V~diM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~~~  222 (503)
T 1me8_A          156 ------------LTQTETKVSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKDYDRSQVCH  222 (503)
T ss_dssp             ------------------------------------------------------------------------------C
T ss_pred             ------------hccccCcHHHHhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEecHHHHhhhcc
Confidence                        012346899999987  99999999999999999999999999999999999999999999988754

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=99.52  E-value=9.1e-16  Score=134.95  Aligned_cols=112  Identities=29%  Similarity=0.403  Sum_probs=0.0

Q ss_pred             ccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcC---CCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhh
Q 026712           78 FMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDD---DWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTF  154 (234)
Q Consensus        78 im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~---~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (234)
                      .|..  +++++.++.++.||.++|.+.+++.+||+|+   +++++|+||.+|+.-.                        
T Consensus       143 g~i~--dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~rf~------------------------  196 (556)
T 4af0_A          143 GFIT--DPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQFQ------------------------  196 (556)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CccC--CCeEcCCCCCHHHHHHHHHHhCCCccccccccCcCCEEEEEEeccccccc------------------------
Confidence            3444  6789999999999999999999999999986   5799999999998531                        


Q ss_pred             HHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHH
Q 026712          155 NELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAAL  224 (234)
Q Consensus       155 ~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~  224 (234)
                               ....+|.++|++++++++.+.++.+|.++|.+++++.+||||++|+++|+||++|+++.-.
T Consensus       197 ---------d~~~~V~evMT~~lvt~~~~~~leeA~~iL~~~kieklpVVd~~g~LvGlIT~kDi~k~~~  257 (556)
T 4af0_A          197 ---------DAETPIKSVMTTEVVTGSSPITLEKANSLLRETKKGKLPIVDSNGHLVSLVARSDLLKNQN  257 (556)
T ss_dssp             ----------------------------------------------------------------------
T ss_pred             ---------ccceEhhhhcccceEEecCCCCHHHHHHHHHHccccceeEEccCCcEEEEEEechhhhhhh
Confidence                     2457899999999999999999999999999999999999999999999999999998654

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=99.45  E-value=1.6e-15  Score=136.17  Aligned_cols=120  Identities=25%  Similarity=0.420  Sum_probs=71.8

Q ss_pred             cccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcC---CCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccc
Q 026712           73 YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDD---DWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNS  149 (234)
Q Consensus        73 ~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~---~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~  149 (234)
                      .++.++|.+  ++.++.+++++.+|.++|.+++++.+||+|+   +++++|+||.+|+....   .              
T Consensus       108 ~~~~~im~~--~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~~~---~--------------  168 (514)
T 1jcn_A          108 KNFEQGFIT--DPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDFLA---E--------------  168 (514)
T ss_dssp             HTCCTTSCS--SCCCCCC-----------------CEESCC--------CCEECTTTTC---------------------
T ss_pred             hhhhhcccc--CCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHhhh---h--------------
Confidence            357788987  7899999999999999999999999999997   58999999999997531   0              


Q ss_pred             hhhhhHHHHHHHhhcCCCcccccccC--CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHH
Q 026712          150 TWKTFNELQRLLSKTNGKVVGDLMTP--APLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAAL  224 (234)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~  224 (234)
                                   .....++.++|++  +++++.+++++.++++.|.+++.+.+||||++|+++|+||++|+++.+.
T Consensus       169 -------------~~~~~~v~~vm~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~~  232 (514)
T 1jcn_A          169 -------------KDHTTLLSEVMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIARTDLKKNRD  232 (514)
T ss_dssp             -------------------------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEESSSSCCC----CCCCSSCCC
T ss_pred             -------------ccCCCCHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCCcccEECCCCeEEEEEEHHHHHHHhh
Confidence                         0234689999998  9999999999999999999999999999999999999999999987654

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=99.42  E-value=1.3e-14  Score=129.33  Aligned_cols=114  Identities=37%  Similarity=0.597  Sum_probs=1.9

Q ss_pred             ccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhh
Q 026712           74 TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKT  153 (234)
Q Consensus        74 ~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (234)
                      ...+.|..  ++.++++++++.++.++|.+.+++.+||+|+ ++++|+|+.+|+..                        
T Consensus        94 ~~~~~m~~--~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~-~~lvGivt~~Dl~~------------------------  146 (486)
T 2cu0_A           94 RAERLIVE--DVITIAPDETVDFALFLMEKHGIDGLPVVED-EKVVGIITKKDIAA------------------------  146 (486)
T ss_dssp             TCC-----------------------------------------------------------------------------
T ss_pred             chhhcccc--CceEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHhcc------------------------
Confidence            34667887  8999999999999999999999999999997 89999999999963                        


Q ss_pred             hHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHH
Q 026712          154 FNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAAL  224 (234)
Q Consensus       154 ~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~  224 (234)
                                ....++.++|+++++++++++++.++++.|.+++.+.+||||++|+++|+||.+||++.+.
T Consensus       147 ----------~~~~~v~~im~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVde~g~lvGiiT~~Dil~~~~  207 (486)
T 2cu0_A          147 ----------REGKLVKELMTKEVITVPESIEVEEALKIMIENRIDRLPVVDERGKLVGLITMSDLVARKK  207 (486)
T ss_dssp             ----------------------------------------------------------------------C
T ss_pred             ----------CCCCCHHHHccCCCeEECCcCcHHHHHHHHHHcCCCEEEEEecCCeEEEEEEHHHHHHhhh
Confidence                      1236799999988999999999999999999999999999999999999999999999864

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=99.30  E-value=6.8e-12  Score=82.13  Aligned_cols=69  Identities=25%  Similarity=0.350  Sum_probs=57.1

Q ss_pred             ceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhhc
Q 026712           85 LHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSKT  164 (234)
Q Consensus        85 ~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (234)
                      ++++.+++++.+|+++|.+++++++||+| +|+++|++|.+|+.+.+...+..                          .
T Consensus         2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d-~~~lvGIvT~~Di~~~~~~~~~~--------------------------~   54 (70)
T 3ghd_A            2 AIVVQPKDTVDRVAKILSRNKAGSAVVME-GDEILGVVTERDILDKVVAKGKN--------------------------P   54 (70)
T ss_dssp             EEEECTTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHHHHTTTTTCC--------------------------G
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHhcCCC--------------------------c
Confidence            57899999999999999999999999998 58999999999998764322211                          2


Q ss_pred             CCCcccccccCCCeEe
Q 026712          165 NGKVVGDLMTPAPLVV  180 (234)
Q Consensus       165 ~~~~v~~im~~~~~~v  180 (234)
                      ...+++++|+++++++
T Consensus        55 ~~~~V~~iMt~~~iTV   70 (70)
T 3ghd_A           55 KEVKVEEIMTKNPVKI   70 (70)
T ss_dssp             GGCBGGGTCEECTTCC
T ss_pred             ccCCHHHhcCCCCeEC
Confidence            3568999999988764

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.27  E-value=1.1e-11  Score=98.59  Aligned_cols=168  Identities=17%  Similarity=0.097  Sum_probs=74.8

Q ss_pred             CCcccccchhhhhhcccCceecCCCccCCCccccC--cc-cccCcceeeccccccc--ccccccccccccCCCCcCcccc
Q 026712            1 MSSISIPSCLTLARLNANGVINSVPHLQLPITVAT--PS-HLSKRLRFFTVSREVK--AFAHNGVGITNSVPPRNGTYTV   75 (234)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~--~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v   75 (234)
                      |.|=||+|.--...- ......+++.+.++.++..  .. .......++.......  +.....++...     ....++
T Consensus         1 ~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~l~Givt~~dl~~~-----~~~~~v   74 (213)
T 1vr9_A            1 MGSDKIHHHHHHMKV-KKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDL-----DLDSSV   74 (213)
T ss_dssp             ------------CBG-GGGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTS-----CTTSBS
T ss_pred             CCcccccccccccCH-HHhhcCCCeEECCCCcHHHHHHHHHHCCCCEEEEEcCCCEEEEEEEHHHHHhh-----cCCCcH
Confidence            344455554332222 2233445666777777622  11 2233344444432221  22222232221     124579


Q ss_pred             ccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhH
Q 026712           76 GDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFN  155 (234)
Q Consensus        76 ~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (234)
                      +++|.+  ++.++++++++.+|+++|.+++++.+||+|++|+++|+||.+|+++.+....                    
T Consensus        75 ~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~Dil~~~~~~~--------------------  132 (213)
T 1vr9_A           75 FNKVSL--PDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEAL--------------------  132 (213)
T ss_dssp             GGGCBC--TTCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHHHSC--------------------
T ss_pred             HHHccC--CCEEECCCCcHHHHHHHHHHhCCCEEEEEcCCCEEEEEEEHHHHHHHHHHHh--------------------
Confidence            999998  8899999999999999999999999999998899999999999997632111                    


Q ss_pred             HHHHHHhhcCCCcccccccCC-CeEecCCCCHHHHHHHHHHcCCCEEEEEcCCC
Q 026712          156 ELQRLLSKTNGKVVGDLMTPA-PLVVHENTNLEDAARLLLETKYRRLPVVDGYG  208 (234)
Q Consensus       156 ~~~~~~~~~~~~~v~~im~~~-~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~  208 (234)
                                  .+.+.+..- +.+.....++.++++.|.+++++.++|++.+|
T Consensus       133 ------------~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~l~V~~~~~  174 (213)
T 1vr9_A          133 ------------AMDVPGIRFSVLLEDKPGELRKVVDALALSNINILSVITTRS  174 (213)
T ss_dssp             ------------C-----------------------------------------
T ss_pred             ------------cCCCCcEEEEEEeCCCCccHHHHHHHHHHCCCcEEEEEEEec
Confidence                        112222211 11113334599999999999999999986544

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.00  E-value=4.1e-10  Score=86.10  Aligned_cols=60  Identities=32%  Similarity=0.536  Sum_probs=55.8

Q ss_pred             cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHH
Q 026712          164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAA  223 (234)
Q Consensus       164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l  223 (234)
                      ....+|+++|+++++++.+++++.+|++.|.+++++.+||+|++|+++|+||..|+++.+
T Consensus        15 l~~~~V~diM~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dll~~~   74 (170)
T 4esy_A           15 IRQVPIRDILTSPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQNGHLVGIITESDFLRGS   74 (170)
T ss_dssp             HHTSBGGGGCCSCCCCEETTSBHHHHHHHHHHTTCSEEEEECTTSCEEEEEEGGGGGGGT
T ss_pred             HcCCCHHHhcCCCCcEECCcCcHHHHHHHHHHcCCeEEEEEcCCccEEEEEEHHHHHHHH
Confidence            346899999999999999999999999999999999999999999999999999998643

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=98.89  E-value=4.9e-09  Score=77.07  Aligned_cols=105  Identities=12%  Similarity=0.060  Sum_probs=72.0

Q ss_pred             CCccCCCccccC--c-ccccCcceeeccccc-cc--ccccccccccccCCCCcCccccccccccCCCceeecCCCCHHHH
Q 026712           24 VPHLQLPITVAT--P-SHLSKRLRFFTVSRE-VK--AFAHNGVGITNSVPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEA   97 (234)
Q Consensus        24 ~~~l~~~~~~~~--~-~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~a   97 (234)
                      +.++.++.++..  . .....+.+++..... ..  +.....++............+++++|.+   +.++++++++.+|
T Consensus        15 ~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~~~~~~v~~~m~~---~~~v~~~~~l~~~   91 (136)
T 3lfr_A           15 MISIKATQTPREFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLILKADGDSDDVKKLLRP---ATFVPESKRLNVL   91 (136)
T ss_dssp             CCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGGSSSGGGCCGGGTCBC---CCEEETTCBHHHH
T ss_pred             EEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHhccCCCcCHHHHcCC---CeEECCCCcHHHH
Confidence            345556665511  1 122334444444332 12  3344444444332233456789999965   7899999999999


Q ss_pred             HHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhh
Q 026712           98 LERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD  131 (234)
Q Consensus        98 ~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~  131 (234)
                      +++|.+++.+.+||+|++|+++|+||..|+++.+
T Consensus        92 ~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l  125 (136)
T 3lfr_A           92 LREFRANHNHMAIVIDEYGGVAGLVTIEDVLEQI  125 (136)
T ss_dssp             HHHHHHHTCCEEEEECTTSCEEEEEEHHHHHTTC
T ss_pred             HHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHH
Confidence            9999999999999999999999999999999864

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=98.88  E-value=2.2e-09  Score=77.92  Aligned_cols=107  Identities=15%  Similarity=0.106  Sum_probs=72.3

Q ss_pred             CCCccCCCccccC--c-ccccCcceeeccccccc-ccccccccccccCCCCcCccccccccccCCCceeecCCCCHHHHH
Q 026712           23 SVPHLQLPITVAT--P-SHLSKRLRFFTVSREVK-AFAHNGVGITNSVPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEAL   98 (234)
Q Consensus        23 ~~~~l~~~~~~~~--~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~a~   98 (234)
                      +++.+.++.++..  . ........++....+.. +.....++............+++++|.+  ++.++.+++++.+++
T Consensus        14 ~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~Givt~~dl~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~~~   91 (128)
T 3gby_A           14 DYPVFTLGGSTADAARRLAASGCACAPVLDGERYLGMVHLSRLLEGRKGWPTVKEKLGEELLE--TVRSYRPGEQLFDNL   91 (128)
T ss_dssp             CSCCEETTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHTTCSSSCCTTCBCCGGGCB--CCCCBCTTSBGGGSH
T ss_pred             CcceECCCCCHHHHHHHHHHCCCcEEEEEECCEEEEEEEHHHHHHHHhhCCcccCcHHHHccC--CCcEECCCCCHHHHH
Confidence            3566666666622  1 12223333444333211 2233333333222222223679999998  889999999999999


Q ss_pred             HHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhh
Q 026712           99 ERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD  131 (234)
Q Consensus        99 ~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~  131 (234)
                      +.|.+++...+||+|++|+++|+||..|+++.+
T Consensus        92 ~~~~~~~~~~lpVvd~~g~~~Giit~~dll~~l  124 (128)
T 3gby_A           92 ISVAAAKCSVVPLADEDGRYEGVVSRKRILGFL  124 (128)
T ss_dssp             HHHHHCSSSEEEEECTTCBEEEEEEHHHHHHHH
T ss_pred             HHHHhCCCcEEEEECCCCCEEEEEEHHHHHHHH
Confidence            999999999999999999999999999999763

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=98.86  E-value=5.8e-09  Score=68.00  Aligned_cols=48  Identities=17%  Similarity=0.382  Sum_probs=44.3

Q ss_pred             CeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHH
Q 026712          177 PLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQ  225 (234)
Q Consensus       177 ~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~  225 (234)
                      ++++.+++++.+|+++|.+++++++||+| +|+++||+|.+|+++.+..
T Consensus         2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d-~~~lvGIvT~~Di~~~~~~   49 (70)
T 3ghd_A            2 AIVVQPKDTVDRVAKILSRNKAGSAVVME-GDEILGVVTERDILDKVVA   49 (70)
T ss_dssp             EEEECTTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHHHHTTT
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHh
Confidence            67899999999999999999999999998 6899999999999976653

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=98.85  E-value=8.2e-09  Score=74.81  Aligned_cols=59  Identities=22%  Similarity=0.267  Sum_probs=53.3

Q ss_pred             cCccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhh
Q 026712           70 NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD  131 (234)
Q Consensus        70 ~~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~  131 (234)
                      ....+++++|.+   +.++++++++.+|++.|.+++...+||+|++|+++|+||..|+++.+
T Consensus        66 ~~~~~v~~~m~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Giit~~dll~~l  124 (127)
T 3nqr_A           66 AEAFSMDKVLRT---AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELI  124 (127)
T ss_dssp             CCCCCHHHHCBC---CCEEETTCBHHHHHHHHHHTTCCEEEEECTTSCEEEEEEHHHHHHHC
T ss_pred             CCCCCHHHHcCC---CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHH
Confidence            356789999965   67899999999999999999999999999999999999999999763

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=98.82  E-value=1.4e-08  Score=75.60  Aligned_cols=63  Identities=17%  Similarity=0.310  Sum_probs=57.9

Q ss_pred             cCCCcccccccC--CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEehHHHHHHHHHh
Q 026712          164 TNGKVVGDLMTP--APLVVHENTNLEDAARLLLETKYRRLPVVDGY-GKLVGLITRGNVVRAALQI  226 (234)
Q Consensus       164 ~~~~~v~~im~~--~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~-~~~vGiit~~dll~~l~~~  226 (234)
                      ....+++++|++  +++++.+++++.+|++.|.+++++++||+|++ |+++|+||..|+++.+.+.
T Consensus        20 l~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~   85 (148)
T 3lv9_A           20 FEEKKIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYNQKINE   85 (148)
T ss_dssp             GGTCBGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHHHHHHH
T ss_pred             cCCCCHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhcC
Confidence            456789999998  89999999999999999999999999999977 8999999999999987654

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=98.80  E-value=6.5e-08  Score=86.46  Aligned_cols=154  Identities=19%  Similarity=0.151  Sum_probs=99.7

Q ss_pred             CceecCCCccCCCccccC---cccccCcceeecccc--ccc--ccccccccccccCCCCcCccccccccccCCCceeecC
Q 026712           18 NGVINSVPHLQLPITVAT---PSHLSKRLRFFTVSR--EVK--AFAHNGVGITNSVPPRNGTYTVGDFMTKKEDLHAVKT   90 (234)
Q Consensus        18 ~g~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~   90 (234)
                      ++++.+|.++.++.++..   ......+++++....  ...  ......++..    ......+++++|++ .+++++++
T Consensus       117 ~~m~~d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~~~lvGiVt~rDl~~----~~~~~~~V~~vM~~-~~~vtv~~  191 (511)
T 3usb_A          117 SGVISDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDMRF----IQDYSIKISDVMTK-EQLITAPV  191 (511)
T ss_dssp             SCSSSSCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTTCBEEEEEEHHHHTT----CCCSSSBHHHHCCC-CCCCCEET
T ss_pred             cccccCCEEECCCCCHHHHHHHHHHcCCcEEEEEecCCCCEEEEEEEehHhhh----hccCCCcHHHhccc-CCCEEECC
Confidence            456667777777777722   123344555655443  211  2222223221    22346789999985 36889999


Q ss_pred             CCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhhcCCCccc
Q 026712           91 TTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVG  170 (234)
Q Consensus        91 ~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  170 (234)
                      +.++.+++++|.+++...+||+|++|+++|+||.+|+++....                                ...+.
T Consensus       192 ~~~l~eal~~m~~~~i~~lpVVDe~g~l~GiIT~~Dil~~~~~--------------------------------p~a~~  239 (511)
T 3usb_A          192 GTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVIEF--------------------------------PNSAK  239 (511)
T ss_dssp             TCCHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHC--------------------------------TTCCB
T ss_pred             CCCHHHHHHHHHHcCCCEEEEEeCCCCEeeeccHHHHHHhhhc--------------------------------ccchh
Confidence            9999999999999999999999999999999999999986421                                12233


Q ss_pred             ccccCCCe--EecCCCCHHHHHHHHHHcCCCEEEEEcCCC
Q 026712          171 DLMTPAPL--VVHENTNLEDAARLLLETKYRRLPVVDGYG  208 (234)
Q Consensus       171 ~im~~~~~--~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~  208 (234)
                      +.+.+-.+  .+.......+.++.+.+.+.+.+.|-..++
T Consensus       240 D~~~rl~V~aavg~~~d~~era~aLveaGvd~I~Id~a~g  279 (511)
T 3usb_A          240 DKQGRLLVGAAVGVTADAMTRIDALVKASVDAIVLDTAHG  279 (511)
T ss_dssp             CTTSCBCCEEEECSSTTHHHHHHHHHHTTCSEEEEECSCT
T ss_pred             hhccceeeeeeeeeccchHHHHHHHHhhccceEEeccccc
Confidence            33333222  233344445666777788888776655444

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=98.79  E-value=1.4e-08  Score=82.12  Aligned_cols=62  Identities=21%  Similarity=0.350  Sum_probs=57.9

Q ss_pred             CCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHh
Q 026712          165 NGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQI  226 (234)
Q Consensus       165 ~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~  226 (234)
                      ...+++++|+++++++.+++++.+|++.|.+++++++||+|++|+++|+||..|+++.+...
T Consensus         5 ~~~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~l~Giit~~di~~~~~~~   66 (245)
T 3l2b_A            5 VKLKVEDLEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITATYMDI   66 (245)
T ss_dssp             CCCBGGGSCCBCCCCBCTTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHHCC
T ss_pred             ccCcHHHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHHh
Confidence            45789999999999999999999999999999999999999889999999999999998653

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=98.78  E-value=2.8e-08  Score=72.18  Aligned_cols=58  Identities=16%  Similarity=0.139  Sum_probs=51.8

Q ss_pred             CccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhh
Q 026712           71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD  131 (234)
Q Consensus        71 ~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~  131 (234)
                      ...+++++|.+   +.++++++++.+|+++|.+++.+.+||+|++|+++|+||..|+++.+
T Consensus        67 ~~~~v~~~m~~---~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~g~~~Giit~~Dil~~l  124 (129)
T 3jtf_A           67 PALDIRSLVRP---AVFIPEVKRLNVLLREFRASRNHLAIVIDEHGGISGLVTMEDVLEQI  124 (129)
T ss_dssp             TTSCGGGGCBC---CCEEETTCBHHHHHHHHHTSSCCEEEEECC-CCEEEEEEHHHHHHHH
T ss_pred             CCcCHHHHhCC---CeEeCCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHH
Confidence            35679999965   78999999999999999999999999999989999999999999764

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=98.78  E-value=9.6e-09  Score=73.60  Aligned_cols=58  Identities=36%  Similarity=0.681  Sum_probs=54.6

Q ss_pred             cccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHH
Q 026712          168 VVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQ  225 (234)
Q Consensus       168 ~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~  225 (234)
                      +++++|.++++++.+++++.++++.|.+++.+.+||+|++|+++|+|+..|+++.+.+
T Consensus         2 ~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~   59 (122)
T 3kpb_A            2 LVKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQ   59 (122)
T ss_dssp             BHHHHCCSCCCCEETTSBHHHHHHHHHHHTCSCEEEECTTSBEEEEECHHHHHHHHHT
T ss_pred             chHHhhCCCCEEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHHHHHHh
Confidence            5788999999999999999999999999999999999988999999999999998765

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=98.76  E-value=2.8e-08  Score=74.03  Aligned_cols=60  Identities=20%  Similarity=0.187  Sum_probs=56.3

Q ss_pred             CCcccccccC--CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHH
Q 026712          166 GKVVGDLMTP--APLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQ  225 (234)
Q Consensus       166 ~~~v~~im~~--~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~  225 (234)
                      ..+++++|.+  +++++.+++++.+|++.|.+++.+.+||+|++|+++|+||..|+++.+.+
T Consensus        27 ~~~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~   88 (149)
T 3k2v_A           27 LLRVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDDMNIIGIFTDGDLRRVFDT   88 (149)
T ss_dssp             TSBGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTTCBEEEEEEHHHHHHHHCS
T ss_pred             ccCHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCCCcEEEEecHHHHHHHHhc
Confidence            4689999998  99999999999999999999999999999988999999999999988754

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=98.76  E-value=1.4e-08  Score=77.67  Aligned_cols=63  Identities=17%  Similarity=0.363  Sum_probs=54.8

Q ss_pred             cCCCccccccc--CCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEehHHHHHHHHHh
Q 026712          164 TNGKVVGDLMT--PAPLVVHENTNLEDAARLLLETKYRRLPVVDGY-GKLVGLITRGNVVRAALQI  226 (234)
Q Consensus       164 ~~~~~v~~im~--~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~-~~~vGiit~~dll~~l~~~  226 (234)
                      ....+++++|+  .+++++.+++++.+|++.|.+++++++||+|++ |+++|+||..|+++.+.+.
T Consensus        39 l~~~~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~  104 (172)
T 3lhh_A           39 LDERTISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLLSESIAG  104 (172)
T ss_dssp             ----CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESSSTTSEEEEEEHHHHHHHHHTT
T ss_pred             cCCCCHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEEHHHHHHHHhhc
Confidence            34578999998  778999999999999999999999999999977 8999999999999987643

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=98.75  E-value=1.3e-08  Score=76.52  Aligned_cols=114  Identities=15%  Similarity=0.169  Sum_probs=76.4

Q ss_pred             hhhhhcccCceecC---CCccCCCccccC--c-ccccCcceeecccccc-c--ccccccccccccCCCCcCccccccccc
Q 026712           10 LTLARLNANGVINS---VPHLQLPITVAT--P-SHLSKRLRFFTVSREV-K--AFAHNGVGITNSVPPRNGTYTVGDFMT   80 (234)
Q Consensus        10 ~~~~~~~~~g~~~~---~~~l~~~~~~~~--~-~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~v~~im~   80 (234)
                      +.+..+....+.++   +.++.++.++..  . .....+.+++...... .  +.....++.......  ...+++++|.
T Consensus        33 ~~l~~~~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~--~~~~v~~im~  110 (156)
T 3oi8_A           33 LDFSDLEVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLKYMFNP--EQFHLKSILR  110 (156)
T ss_dssp             HHHTTCBGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGSSCG--GGCCHHHHCB
T ss_pred             hccCCCCHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHcC--CcccHHHHcC
Confidence            34445555566653   566677777622  1 1223344454443321 2  333333443322111  4668999996


Q ss_pred             cCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHh
Q 026712           81 KKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL  128 (234)
Q Consensus        81 ~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~  128 (234)
                      +   +.++++++++.+|++.|.+++.+.+||+|++|+++|+||..|++
T Consensus       111 ~---~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~g~~~Givt~~Dil  155 (156)
T 3oi8_A          111 P---AVFVPEGKSLTALLKEFREQRNHMAIVIDEYGGTSGLVTFEDII  155 (156)
T ss_dssp             C---CCEEETTSBHHHHHHHHHHTTCCEEEEECTTSSEEEEEEHHHHC
T ss_pred             C---CEEECCCCCHHHHHHHHHhcCCeEEEEECCCCCEEEEEEHHHhc
Confidence            5   78999999999999999999999999999999999999999985

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=98.75  E-value=1.6e-08  Score=76.40  Aligned_cols=60  Identities=23%  Similarity=0.335  Sum_probs=54.2

Q ss_pred             Cccccccc--CCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHh
Q 026712          167 KVVGDLMT--PAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQI  226 (234)
Q Consensus       167 ~~v~~im~--~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~  226 (234)
                      ..+.++|+  .+++++.+++++.+|++.|.+++++++||+|++|+++|+||.+|+++.+.+.
T Consensus        15 ~~~~~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~~~lvGiit~~Di~~~~~~~   76 (156)
T 3k6e_A           15 GQEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQMEH   76 (156)
T ss_dssp             TTGGGGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC-CBEEEEEEHHHHHHHHHHH
T ss_pred             ccHHHhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEecchhhhhhhc
Confidence            46889997  4789999999999999999999999999999889999999999999988754

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=98.75  E-value=3.2e-08  Score=80.51  Aligned_cols=62  Identities=26%  Similarity=0.313  Sum_probs=56.8

Q ss_pred             CCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCC--CcEEEEEehHHHHHHHHHh
Q 026712          165 NGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGY--GKLVGLITRGNVVRAALQI  226 (234)
Q Consensus       165 ~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~--~~~vGiit~~dll~~l~~~  226 (234)
                      ....|.++|+++++++.+++++.+|+++|.+++++.+||||++  ++++|+|++.||++.+...
T Consensus        11 ~~~~v~diMt~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~~~   74 (250)
T 2d4z_A           11 YNIQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRR   74 (250)
T ss_dssp             SSCBTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHH
T ss_pred             CCCChHHhcCCCCeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHHHHh
Confidence            4578999999999999999999999999999999999999963  6899999999999987655

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=98.73  E-value=2.6e-08  Score=75.18  Aligned_cols=60  Identities=28%  Similarity=0.454  Sum_probs=56.0

Q ss_pred             CCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHH
Q 026712          166 GKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQ  225 (234)
Q Consensus       166 ~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~  225 (234)
                      ..+++++|.++++++.+++++.+|++.|.+++.+.+||+|++|+++|+||..|+++.+..
T Consensus         4 ~~~v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~   63 (160)
T 2o16_A            4 MIKVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQES   63 (160)
T ss_dssp             CCBGGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred             cCcHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHH
Confidence            467999999999999999999999999999999999999988999999999999998764

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=98.73  E-value=2.5e-09  Score=94.36  Aligned_cols=111  Identities=20%  Similarity=0.136  Sum_probs=1.1

Q ss_pred             cCceecCCCccCCCccccCccc---ccCcceeecccccccccccccccccc-cCCCCcCccccccccccCCCceeecCCC
Q 026712           17 ANGVINSVPHLQLPITVATPSH---LSKRLRFFTVSREVKAFAHNGVGITN-SVPPRNGTYTVGDFMTKKEDLHAVKTTT   92 (234)
Q Consensus        17 ~~g~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~im~~~~~~~~v~~~~   92 (234)
                      .+|++.+|.++.|+.++.....   +..++.+.......... ...++.+. .........+|+++|++  ++++++++.
T Consensus       141 e~g~i~dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~-kLvGIvT~RD~rf~d~~~~V~evMT~--~lvt~~~~~  217 (556)
T 4af0_A          141 ENGFITDPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDS-KLLGIVTGRDVQFQDAETPIKSVMTT--EVVTGSSPI  217 (556)
T ss_dssp             CC------------------------------------------------------------------------------
T ss_pred             ccCccCCCeEcCCCCCHHHHHHHHHHhCCCccccccccCcCC-EEEEEEecccccccccceEhhhhccc--ceEEecCCC
Confidence            4677778889999998844332   22333332222111111 11122222 22222446789999998  899999999


Q ss_pred             CHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhh
Q 026712           93 TVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLAL  130 (234)
Q Consensus        93 ~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~  130 (234)
                      ++++|.++|.++++..+||||++++++|+||.+|+.+.
T Consensus       218 ~leeA~~iL~~~kieklpVVd~~g~LvGlIT~kDi~k~  255 (556)
T 4af0_A          218 TLEKANSLLRETKKGKLPIVDSNGHLVSLVARSDLLKN  255 (556)
T ss_dssp             --------------------------------------
T ss_pred             CHHHHHHHHHHccccceeEEccCCcEEEEEEechhhhh
Confidence            99999999999999999999999999999999999875

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=98.72  E-value=3.3e-09  Score=94.77  Aligned_cols=112  Identities=20%  Similarity=0.164  Sum_probs=22.8

Q ss_pred             cCccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccc
Q 026712           70 NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNS  149 (234)
Q Consensus        70 ~~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~  149 (234)
                      ....+++++|++..+++++++++++.+|+++|.+++++.+||+|++|+++|+||.+|+++.+....              
T Consensus       158 ~~~~~V~diM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~~~~--------------  223 (503)
T 1me8_A          158 QTETKVSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKDYDRSQVCHN--------------  223 (503)
T ss_dssp             ----------------------------------------------------------------CC--------------
T ss_pred             cccCcHHHHhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEecHHHHhhhccc--------------
Confidence            346689999998223999999999999999999999999999999999999999999997632110              


Q ss_pred             hhhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEE
Q 026712          150 TWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVG  212 (234)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vG  212 (234)
                                    ....+...++.  ...+.. ....+.++.|.+.+++.++|-..+|...|
T Consensus       224 --------------~~~d~~~~l~v--~a~v~~-~~~~e~~~~l~e~gv~~l~Vd~~~g~~~~  269 (503)
T 1me8_A          224 --------------ELVDSQKRYLV--GAGINT-RDFRERVPALVEAGADVLCIDSSDGFSEW  269 (503)
T ss_dssp             --------------CCBCTTSCBCC--EEEECS-SSHHHHHHHHHHHTCSEEEECCSCCCSHH
T ss_pred             --------------chhcccccccc--ccccCc-hhHHHHHHHHHhhhccceEEecccCcccc
Confidence                          00111222221  122344 56667788888889987666333444433

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=98.72  E-value=3.5e-08  Score=72.23  Aligned_cols=59  Identities=27%  Similarity=0.441  Sum_probs=54.4

Q ss_pred             CCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHH
Q 026712          165 NGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAA  223 (234)
Q Consensus       165 ~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l  223 (234)
                      ...+++++|.++++++.+++++.+|++.|.+++.+.+||+|++|+++|+|+..|+++.+
T Consensus         5 ~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~   63 (138)
T 2yzi_A            5 MKAPIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRV   63 (138)
T ss_dssp             TTSBGGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHT
T ss_pred             hhhhHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHH
Confidence            45789999999999999999999999999999999999999889999999999998543

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=98.71  E-value=4e-08  Score=72.31  Aligned_cols=60  Identities=15%  Similarity=0.260  Sum_probs=55.7

Q ss_pred             CcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCC--cEEEEEehHHHHHHHHHh
Q 026712          167 KVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYG--KLVGLITRGNVVRAALQI  226 (234)
Q Consensus       167 ~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~--~~vGiit~~dll~~l~~~  226 (234)
                      .++.++|.++++++.+++++.+|++.|.+++.+.+||+|++|  +++|+|+..|+++.+.+.
T Consensus         5 ~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~Givt~~dl~~~~~~~   66 (141)
T 2rih_A            5 IRTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQR   66 (141)
T ss_dssp             CBGGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTT
T ss_pred             eEHHHHhcCCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCcceeEEEEEHHHHHHHHhcC
Confidence            579999999999999999999999999999999999999877  999999999999987643

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=98.69  E-value=5.6e-08  Score=70.66  Aligned_cols=60  Identities=28%  Similarity=0.406  Sum_probs=55.5

Q ss_pred             CCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHh
Q 026712          166 GKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQI  226 (234)
Q Consensus       166 ~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~  226 (234)
                      ..+++++|.++++++.+++++.+|++.|.+++.+.+||+| +|+++|+|+..|+++.+.+.
T Consensus         3 ~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~Givt~~dl~~~~~~~   62 (133)
T 2ef7_A            3 EEIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD-GNKPVGIITERDIVKAIGKG   62 (133)
T ss_dssp             CCBGGGTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTT
T ss_pred             cccHHHhccCCCEEECCCCcHHHHHHHHHhcCCCEEEEEE-CCEEEEEEcHHHHHHHHhcC
Confidence            4679999999999999999999999999999999999999 89999999999999887653

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=98.69  E-value=6.8e-08  Score=72.74  Aligned_cols=61  Identities=31%  Similarity=0.439  Sum_probs=55.6

Q ss_pred             cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHH
Q 026712          164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQ  225 (234)
Q Consensus       164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~  225 (234)
                      ....++.++|.+ ++++.+++++.+|++.|.+++.+.+||+|++|+++|+||..|+++.+..
T Consensus        14 l~~~~v~~im~~-~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~   74 (159)
T 3fv6_A           14 LKKLQVKDFQSI-PVVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRASIG   74 (159)
T ss_dssp             HTTCBGGGSCBC-CCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHTS
T ss_pred             HhhCCHHHHcCC-CEEECCCCcHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHhhc
Confidence            456789999987 5699999999999999999999999999988999999999999998743

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=98.69  E-value=3.7e-08  Score=70.74  Aligned_cols=58  Identities=28%  Similarity=0.268  Sum_probs=53.6

Q ss_pred             cccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHh
Q 026712          168 VVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQI  226 (234)
Q Consensus       168 ~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~  226 (234)
                      +++++|.++++++.+++++.+|++.|.+++.+.+||+| +|+++|+|+..|+++.+.+.
T Consensus         2 ~v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~G~it~~dl~~~~~~~   59 (125)
T 1pbj_A            2 RVEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVK-EGVRVGIVTTWDVLEAIAEG   59 (125)
T ss_dssp             CHHHHCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEE-TTEEEEEEEHHHHHHHHHHT
T ss_pred             CHHHhcCCCceEECCCCcHHHHHHHHHHcCCCEEEEEe-CCeeEEEEeHHHHHHHHhcC
Confidence            47789999999999999999999999999999999999 89999999999999887653

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=98.68  E-value=4.5e-08  Score=71.57  Aligned_cols=60  Identities=23%  Similarity=0.377  Sum_probs=55.2

Q ss_pred             CCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHH-HHHHH
Q 026712          165 NGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNV-VRAAL  224 (234)
Q Consensus       165 ~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dl-l~~l~  224 (234)
                      ...+++++|.++++++.+++++.+|++.|.+++.+.+||+|++|+++|+|+..|+ ++.+.
T Consensus         6 ~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~   66 (138)
T 2p9m_A            6 KNIKVKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLIR   66 (138)
T ss_dssp             TTCBGGGTSBCSCCCEETTSBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHHHHHTT
T ss_pred             ccCCHHHhhcCCceEECCCCcHHHHHHHHHHCCCcEEEEECCCCeEEEEEEHHHHHHHHHh
Confidence            3578999999999999999999999999999999999999988999999999999 87654

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=98.67  E-value=2.8e-08  Score=73.75  Aligned_cols=59  Identities=31%  Similarity=0.486  Sum_probs=54.4

Q ss_pred             CccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhh
Q 026712           71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD  131 (234)
Q Consensus        71 ~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~  131 (234)
                      ...+++++|.+  ++.++++++++.+|+++|.+++.+.+||+|++|+++|+||.+|+++.+
T Consensus        83 ~~~~v~~~m~~--~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Giit~~dil~~~  141 (152)
T 4gqw_A           83 NGKLVGDLMTP--APLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVVRAA  141 (152)
T ss_dssp             -CCBHHHHSEE--SCCCEESSSBHHHHHHHHHHSSCCEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred             ccccHHHhcCC--CceEECCCCcHHHHHHHHHHCCCCEEEEECCCCcEEEEEEHHHHHHHH
Confidence            35689999998  789999999999999999999999999999899999999999999864

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=98.67  E-value=2.8e-08  Score=74.76  Aligned_cols=62  Identities=29%  Similarity=0.372  Sum_probs=56.7

Q ss_pred             cCCCcccccccC--CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHH
Q 026712          164 TNGKVVGDLMTP--APLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQ  225 (234)
Q Consensus       164 ~~~~~v~~im~~--~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~  225 (234)
                      ....++.++|.+  +++++.+++++.+|++.|.+++.+.+||+|++|+++|+||..|+++.+..
T Consensus        11 l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~   74 (159)
T 1yav_A           11 LLEATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFG   74 (159)
T ss_dssp             CTTCBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBC
T ss_pred             HhHhhHHHHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECCCCCEEEEeEHHHHHHHhhh
Confidence            345789999987  89999999999999999999999999999988999999999999988754

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=98.67  E-value=4.3e-08  Score=73.33  Aligned_cols=57  Identities=21%  Similarity=0.318  Sum_probs=53.4

Q ss_pred             ccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhh
Q 026712           72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD  131 (234)
Q Consensus        72 ~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~  131 (234)
                      ..+++++| +  ++.++++++++.+|++.|.+++...+||+|++|+++|+||..|+++.+
T Consensus        85 ~~~v~~~m-~--~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~~vGivt~~dil~~l  141 (153)
T 3oco_A           85 KAKISTIM-R--DIVSVPENMKVPDVMEEMSAHRVPMAIVIDEYGGTSGIITDKDVYEEL  141 (153)
T ss_dssp             TSBGGGTC-B--CCEEEETTSBHHHHHHHHHHTTCSCEEEECTTSCEEEEECHHHHHHHH
T ss_pred             CCcHHHHh-C--CCeEECCCCCHHHHHHHHHHcCCcEEEEEeCCCCEEEEeeHHHHHHHH
Confidence            56899999 6  789999999999999999999999999999999999999999999874

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=98.66  E-value=4.8e-08  Score=77.11  Aligned_cols=59  Identities=29%  Similarity=0.317  Sum_probs=54.9

Q ss_pred             CccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhh
Q 026712           71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD  131 (234)
Q Consensus        71 ~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~  131 (234)
                      ...+++++|.+  ++.++++++++.+|++.|.+++...+||+|++|+++|+||..|+++.+
T Consensus       114 ~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~~g~lvGiIT~~Dil~~i  172 (205)
T 3kxr_A          114 PHEPLISLLSE--DSRALTANTTLLDAAEAIEHSREIELPVIDDAGELIGRVTLRAATALV  172 (205)
T ss_dssp             TTSBGGGGCCS--SCCCEETTSCHHHHHHHHHTSSCSEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred             CcchHHHHhcC--CCeEECCCCCHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHH
Confidence            35689999988  789999999999999999999999999999999999999999998764

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=98.65  E-value=2.6e-08  Score=72.46  Aligned_cols=62  Identities=16%  Similarity=0.232  Sum_probs=53.6

Q ss_pred             CCCcccccccC--CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEehHHHHHHHHHh
Q 026712          165 NGKVVGDLMTP--APLVVHENTNLEDAARLLLETKYRRLPVVDGY-GKLVGLITRGNVVRAALQI  226 (234)
Q Consensus       165 ~~~~v~~im~~--~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~-~~~vGiit~~dll~~l~~~  226 (234)
                      ...+++++|++  .++++.+++++.+|++.|.+++++++||+|++ |+++|+||..|+++.+.+.
T Consensus         4 ~~~~v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~   68 (130)
T 3i8n_A            4 QDVPVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQSG   68 (130)
T ss_dssp             ---CCTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHHTT
T ss_pred             CcCCHhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHhcC
Confidence            35789999984  46689999999999999999999999999976 8999999999999987654

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=98.64  E-value=3.4e-08  Score=75.56  Aligned_cols=59  Identities=29%  Similarity=0.482  Sum_probs=54.8

Q ss_pred             CccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhh
Q 026712           71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD  131 (234)
Q Consensus        71 ~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~  131 (234)
                      ...+++++|.+  ++.++++++++.+|+++|.+++++.+||+|++|+++|+||.+|+++.+
T Consensus        96 ~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dil~~~  154 (180)
T 3sl7_A           96 YGKVVGDLMTP--SPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVRAA  154 (180)
T ss_dssp             TTCBHHHHSEE--SCCCEETTSBHHHHHHHHTTSTTCEEEEECTTCBEEEEEEHHHHHHHH
T ss_pred             ccccHHHHhCC--CceEeCCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHH
Confidence            35689999998  889999999999999999999999999999999999999999999864

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=98.63  E-value=6.2e-08  Score=72.92  Aligned_cols=62  Identities=23%  Similarity=0.378  Sum_probs=56.6

Q ss_pred             cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcC--CCcEEEEEehHHHHHHHHH
Q 026712          164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDG--YGKLVGLITRGNVVRAALQ  225 (234)
Q Consensus       164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~--~~~~vGiit~~dll~~l~~  225 (234)
                      ....+++++|.++++++.+++++.+|++.|.+++.+++||+|+  +|+++|+||..|+++.+..
T Consensus        10 ~~~~~v~dim~~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~~   73 (164)
T 2pfi_A           10 SHHVRVEHFMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQA   73 (164)
T ss_dssp             CCSCBHHHHCBCCCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHC
T ss_pred             ccCCCHHHHcCCCCeEECCCCcHHHHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHHh
Confidence            3457899999999999999999999999999999999999996  6899999999999988754

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=98.63  E-value=3.4e-08  Score=71.94  Aligned_cols=58  Identities=16%  Similarity=0.087  Sum_probs=52.5

Q ss_pred             CccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhh
Q 026712           71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD  131 (234)
Q Consensus        71 ~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~  131 (234)
                      ...+++++|.   ++.++++++++.+|++.|.+++.+.+||+|++|+++|+||.+|+++.+
T Consensus        68 ~~~~v~~~m~---~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l  125 (130)
T 3hf7_A           68 TKEIMLRAAD---EIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEI  125 (130)
T ss_dssp             CHHHHHHHSB---CCCEEETTCBHHHHHHHHHHHCCCEEEEECTTSCEEEEEEHHHHHHHH
T ss_pred             chhhHHHhcc---CCeEeCCCCcHHHHHHHHHhcCCeEEEEEcCCCCEEEEeeHHHHHHHH
Confidence            3567999994   578999999999999999999999999999999999999999999864

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=98.63  E-value=4.7e-08  Score=73.19  Aligned_cols=62  Identities=29%  Similarity=0.335  Sum_probs=55.4

Q ss_pred             cCCCcccccccC--CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHH
Q 026712          164 TNGKVVGDLMTP--APLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQ  225 (234)
Q Consensus       164 ~~~~~v~~im~~--~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~  225 (234)
                      ....++.++|.+  +++++.+++++.+|++.|.+++.+.+||+|++|+++|+||..|+++.+..
T Consensus         8 l~~~~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~   71 (157)
T 2emq_A            8 FMQMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMMMDAILG   71 (157)
T ss_dssp             --CCBSTTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTTCCEEEEEEHHHHHHHSBC
T ss_pred             HhhCcHHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcCCCCEEEEeeHHHHHHHHhc
Confidence            345789999986  89999999999999999999999999999988999999999999987643

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=98.63  E-value=1.3e-07  Score=72.42  Aligned_cols=64  Identities=16%  Similarity=0.199  Sum_probs=57.2

Q ss_pred             hcCCCccccccc--CCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEehHHHHHHHHHh
Q 026712          163 KTNGKVVGDLMT--PAPLVVHENTNLEDAARLLLETKYRRLPVVDGY-GKLVGLITRGNVVRAALQI  226 (234)
Q Consensus       163 ~~~~~~v~~im~--~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~-~~~vGiit~~dll~~l~~~  226 (234)
                      .....+++++|+  .+++++.+++++.+|++.|.+++++++||++++ |+++|+|+.+|+++.+.+.
T Consensus        32 ~l~~~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl~~~~~~~   98 (173)
T 3ocm_A           32 TLAERSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDLVADLITE   98 (173)
T ss_dssp             HHTTSCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHHHHHHHHH
T ss_pred             ccCCCCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHHHHHHhcC
Confidence            356788999997  468899999999999999999999999999976 8999999999999987643

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=98.62  E-value=9.8e-08  Score=70.13  Aligned_cols=60  Identities=17%  Similarity=0.258  Sum_probs=54.5

Q ss_pred             CCcccc---cccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHH
Q 026712          166 GKVVGD---LMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQ  225 (234)
Q Consensus       166 ~~~v~~---im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~  225 (234)
                      ..++++   +|.++++++.+++++.+|++.|.+++.+.+||+|++|+++|+|+..|+++.+.+
T Consensus         7 ~~~v~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~   69 (144)
T 2nyc_A            7 KIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKG   69 (144)
T ss_dssp             GSBGGGSSCCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHT
T ss_pred             hcchhhcCCCCCCCceEECCCCcHHHHHHHHHHcCcceeeEEcCCCcEEEEEcHHHHHHHhcc
Confidence            356777   888889999999999999999999999999999988999999999999988754

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=98.62  E-value=3.7e-08  Score=73.25  Aligned_cols=60  Identities=32%  Similarity=0.418  Sum_probs=55.3

Q ss_pred             CCCccccccc--CCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHH
Q 026712          165 NGKVVGDLMT--PAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAAL  224 (234)
Q Consensus       165 ~~~~v~~im~--~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~  224 (234)
                      ...+++++|.  .+++++.+++++.+|++.|.+++.+++||+|++|+++|+||..|+++.+.
T Consensus        13 ~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~   74 (150)
T 3lqn_A           13 QQIFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMILDGIL   74 (150)
T ss_dssp             HHCBHHHHSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHTB
T ss_pred             hcCChhhcccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECCCCCEEEEEEHHHHHHHHH
Confidence            3478999998  46999999999999999999999999999998899999999999998875

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=98.61  E-value=7e-08  Score=70.41  Aligned_cols=59  Identities=27%  Similarity=0.404  Sum_probs=54.3

Q ss_pred             cCccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhh
Q 026712           70 NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD  131 (234)
Q Consensus        70 ~~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~  131 (234)
                      ....+++++|.+  ++.++++++++.+|++.|.+++.+.+||+| +|+++|+||..|+++.+
T Consensus        71 ~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dll~~~  129 (135)
T 2rc3_A           71 VKDTQVKEIMTR--QVAYVDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDA  129 (135)
T ss_dssp             GGGSBGGGTSBC--SCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHH
T ss_pred             cccCCHHHhccC--CCeEECCCCcHHHHHHHHHHhCCCEEEEEe-CCEEEEEEEHHHHHHHH
Confidence            456789999998  889999999999999999999999999999 79999999999999764

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=98.60  E-value=8.1e-08  Score=72.75  Aligned_cols=63  Identities=24%  Similarity=0.317  Sum_probs=57.5

Q ss_pred             cCCCcccccccC---CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHh
Q 026712          164 TNGKVVGDLMTP---APLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQI  226 (234)
Q Consensus       164 ~~~~~v~~im~~---~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~  226 (234)
                      ....+++++|.+   +++++.+++++.+|++.|.+++.+.+||+|++|+++|+||..|+++.+.+.
T Consensus        21 l~~~~v~dim~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~   86 (165)
T 3fhm_A           21 GMATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVKAVAGQ   86 (165)
T ss_dssp             SSSCBHHHHHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHH
T ss_pred             hhhcCHHHHhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHHhc
Confidence            345789999984   799999999999999999999999999999889999999999999988765

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=98.59  E-value=8.8e-08  Score=71.77  Aligned_cols=59  Identities=29%  Similarity=0.434  Sum_probs=54.6

Q ss_pred             CccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhc
Q 026712           71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS  132 (234)
Q Consensus        71 ~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~  132 (234)
                      ...+++++|.+  ++.++.+++++.+|+++|.+++++.+||+| +|+++|+||..|+++.+.
T Consensus        76 ~~~~v~~~m~~--~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dil~~l~  134 (157)
T 4fry_A           76 KATRVEEIMTA--KVRYVEPSQSTDECMALMTEHRMRHLPVLD-GGKLIGLISIGDLVKSVI  134 (157)
T ss_dssp             SSCBHHHHSBS--SCCCBCTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred             cccCHHHHcCC--CCcEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHH
Confidence            46789999998  889999999999999999999999999999 799999999999998753

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=98.58  E-value=1.2e-07  Score=73.06  Aligned_cols=58  Identities=26%  Similarity=0.340  Sum_probs=54.9

Q ss_pred             CcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHH
Q 026712          167 KVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAAL  224 (234)
Q Consensus       167 ~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~  224 (234)
                      .+++++|.++++++.+++++.+|++.|.+++.+.+||+|++|+++|+|+..|+++.+.
T Consensus         9 ~~v~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~g~~vGivt~~dl~~~~~   66 (184)
T 1pvm_A            9 MRVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFI   66 (184)
T ss_dssp             CBGGGTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTG
T ss_pred             cCHHHhcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Confidence            6899999999999999999999999999999999999997899999999999998765

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=98.55  E-value=9.3e-08  Score=69.47  Aligned_cols=58  Identities=26%  Similarity=0.467  Sum_probs=53.4

Q ss_pred             CccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhh
Q 026712           71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD  131 (234)
Q Consensus        71 ~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~  131 (234)
                      ...+++++|.+  ++.++++++++.+|++.|.+.+.+.+||+|+ |+++|+||..|+++.+
T Consensus        72 ~~~~v~~~m~~--~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-g~~~Giit~~dil~~l  129 (133)
T 1y5h_A           72 NTATAGELARD--SIYYVDANASIQEMLNVMEEHQVRRVPVISE-HRLVGIVTEADIARHL  129 (133)
T ss_dssp             TTSBHHHHHTT--CCCCEETTCCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHTC
T ss_pred             cccCHHHHhcC--CCEEECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHH
Confidence            45689999988  8899999999999999999999999999997 8999999999998753

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=98.54  E-value=1.1e-07  Score=71.30  Aligned_cols=60  Identities=30%  Similarity=0.378  Sum_probs=55.1

Q ss_pred             cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCE-EEEEcCCCcEEEEEehHHHHHHHH
Q 026712          164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRR-LPVVDGYGKLVGLITRGNVVRAAL  224 (234)
Q Consensus       164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~-vpVv~~~~~~vGiit~~dll~~l~  224 (234)
                      ....+++++|.++++++.+++++.+|++.|.+++.+. +||+|++ +++|+||..|+++.+.
T Consensus        13 ~~~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~~-~~vGivt~~dl~~~~~   73 (157)
T 1o50_A           13 MKVKDVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDN-KLVGMIPVMHLLKVSG   73 (157)
T ss_dssp             CBHHHHTTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETT-EEEEEEEHHHHHHHHH
T ss_pred             hccccHhhcccCCCceECCCCCHHHHHHHHHhCCCCccEEEEECC-EEEEEEEHHHHHHHHh
Confidence            3456799999999999999999999999999999999 9999976 9999999999998765

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=98.50  E-value=2e-07  Score=71.56  Aligned_cols=62  Identities=27%  Similarity=0.492  Sum_probs=56.2

Q ss_pred             CCCcccccccCC----CeEe--cCCCCHHHHHHHHHHcCCCEEEEE--cCCCcEEEEEehHHHHHHHHHh
Q 026712          165 NGKVVGDLMTPA----PLVV--HENTNLEDAARLLLETKYRRLPVV--DGYGKLVGLITRGNVVRAALQI  226 (234)
Q Consensus       165 ~~~~v~~im~~~----~~~v--~~~~~l~~~~~~m~~~~~~~vpVv--~~~~~~vGiit~~dll~~l~~~  226 (234)
                      ...+++++|.+.    ++++  .+++++.+|++.|.+++.+.+||+  |++|+++|+|+..|+++.+...
T Consensus         9 ~~~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~~~lvGiit~~dl~~~~~~~   78 (185)
T 2j9l_A            9 HKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENA   78 (185)
T ss_dssp             CCCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHH
T ss_pred             ccCcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCCCeEEEEEEHHHHHHHHHhh
Confidence            457899999876    7888  999999999999999999999999  7789999999999999988754

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=98.43  E-value=3e-07  Score=75.79  Aligned_cols=59  Identities=27%  Similarity=0.406  Sum_probs=54.8

Q ss_pred             CccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhh
Q 026712           71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD  131 (234)
Q Consensus        71 ~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~  131 (234)
                      ...+++++|.+  ++.++++++++.++++.|.+++...+||+|++|+++|+||..|+++.+
T Consensus       197 ~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivT~~Dil~~i  255 (278)
T 2yvy_A          197 PRTRVAEIMNP--KVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVL  255 (278)
T ss_dssp             TTCBSTTTSBS--SCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHC
T ss_pred             CCCcHHHHhCC--CCeEEeCCCCHHHHHHHHHhcCCCEEEEEeCCCeEEEEEEHHHHHHHH
Confidence            46689999987  789999999999999999999999999999999999999999999864

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=98.39  E-value=5.2e-07  Score=81.01  Aligned_cols=61  Identities=23%  Similarity=0.504  Sum_probs=57.3

Q ss_pred             CCcccccccCCCeEecCC-CCHHHHHHHHHHcCCCEEEEEc-CCCcEEEEEehHHHHHHHHHh
Q 026712          166 GKVVGDLMTPAPLVVHEN-TNLEDAARLLLETKYRRLPVVD-GYGKLVGLITRGNVVRAALQI  226 (234)
Q Consensus       166 ~~~v~~im~~~~~~v~~~-~~l~~~~~~m~~~~~~~vpVv~-~~~~~vGiit~~dll~~l~~~  226 (234)
                      ..+|.++|+++++++.++ +++.+|++.|.+++++++||+| ++|+++|+||.+||++.+.+.
T Consensus       383 ~~~V~diM~~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~~~  445 (527)
T 3pc3_A          383 SLAIAELELPAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSM  445 (527)
T ss_dssp             TSBGGGGCCCCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHHHHHHH
T ss_pred             CCcHHHhCcCCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCCCEEEEEEEHHHHHHHHHhc
Confidence            578999999999999999 9999999999999999999999 789999999999999988764

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=98.38  E-value=3.6e-07  Score=75.71  Aligned_cols=59  Identities=17%  Similarity=0.311  Sum_probs=54.7

Q ss_pred             CccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhh
Q 026712           71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD  131 (234)
Q Consensus        71 ~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~  131 (234)
                      ...+++++|.+  ++.++++++++.+|++.|.+++...+||+|++|+++|+||..|+++.+
T Consensus       199 ~~~~v~~im~~--~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIT~~Dil~~i  257 (286)
T 2oux_A          199 DDTLIADILNE--RVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVI  257 (286)
T ss_dssp             TTSBHHHHSBS--CCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHH
T ss_pred             CCCcHHHHcCC--CCeeecCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHH
Confidence            46689999988  789999999999999999999999999999999999999999998763

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=98.36  E-value=3.1e-07  Score=81.82  Aligned_cols=109  Identities=23%  Similarity=0.264  Sum_probs=64.1

Q ss_pred             CceecCCCccCCCccccCc---ccccCcceeeccccccc--ccccccccccccCCCCcCccccccccccCCCceeecCCC
Q 026712           18 NGVINSVPHLQLPITVATP---SHLSKRLRFFTVSREVK--AFAHNGVGITNSVPPRNGTYTVGDFMTKKEDLHAVKTTT   92 (234)
Q Consensus        18 ~g~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~   92 (234)
                      .+++.+|.++.++.++...   .......+++.......  ......++.    .......++.++|++.+++++++++.
T Consensus        93 ~~m~~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~~~lvGiVt~rDL~----~~~~~~~~v~diM~p~~~~vtv~~~~  168 (496)
T 4fxs_A           93 AGVVTHPVTVRPEQTIADVMELTHYHGFAGFPVVTENNELVGIITGRDVR----FVTDLTKSVAAVMTPKERLATVKEGA  168 (496)
T ss_dssp             C--CBCCCCBCSSSBHHHHHHHHTSSCCCEEEEECSSSBEEEEEEHHHHT----TCCCTTSBGGGTSEEGGGCCEEECC-
T ss_pred             cccccCceEECCCCCHHHHHHHHHHcCCcEEEEEccCCEEEEEEEHHHHh----hcccCCCcHHHHhcCCCCCEEECCCC
Confidence            4566677777777777221   23334455555443222  222222222    12234678999999432489999999


Q ss_pred             CHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhh
Q 026712           93 TVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLAL  130 (234)
Q Consensus        93 ~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~  130 (234)
                      ++.+++++|.+++...+||+|++|+++|+||.+|+++.
T Consensus       169 ~l~ea~~~m~~~~i~~lpVVDe~G~l~GiIT~~DIl~~  206 (496)
T 4fxs_A          169 TGAEVQEKMHKARVEKILVVNDEFQLKGMITAKDFHKA  206 (496)
T ss_dssp             ---CGGGTCC---CCCEEEECTTSBCCEEECCC-----
T ss_pred             CHHHHHHHHHHcCCCEEEEEcCCCCEEEeehHhHHHHh
Confidence            99999999999999999999999999999999999976

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=98.36  E-value=7.3e-07  Score=79.28  Aligned_cols=109  Identities=19%  Similarity=0.210  Sum_probs=0.4

Q ss_pred             CceecCCCccCCCccccCc---ccccCcceeeccccccc--ccccccccccccCCCCcCccccccccccCCCceeecCCC
Q 026712           18 NGVINSVPHLQLPITVATP---SHLSKRLRFFTVSREVK--AFAHNGVGITNSVPPRNGTYTVGDFMTKKEDLHAVKTTT   92 (234)
Q Consensus        18 ~g~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~   92 (234)
                      .+++.+|.++.++.++...   .....+.+++... ...  ......++..    ......+++++|++.++++++++++
T Consensus        92 ~~m~~~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd-~g~lvGIVt~rDl~~----~~~~~~~V~~vMtp~~~~vtv~~~~  166 (490)
T 4avf_A           92 TAIVRDPVTVTPSTKIIELLQMAREYGFSGFPVVE-QGELVGIVTGRDLRV----KPNAGDTVAAIMTPKDKLVTAREGT  166 (490)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             cCcccCceEeCCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEEEhHHhhh----ccccCCcHHHHhccCCCCEEECCCC
Confidence            4455566667777666222   2222334444333 111  1122222211    1234668999999422489999999


Q ss_pred             CHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhh
Q 026712           93 TVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD  131 (234)
Q Consensus        93 ~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~  131 (234)
                      ++.+++++|.++++..+||+|++|+++|+||.+|+++..
T Consensus       167 ~l~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~  205 (490)
T 4avf_A          167 PLEEMKAKLYENRIEKMLVVDENFYLRGLVTFRDIEKAK  205 (490)
T ss_dssp             ---------------------------------------
T ss_pred             cHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHhhhhc
Confidence            999999999999999999999999999999999999863

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=98.26  E-value=1.2e-06  Score=77.51  Aligned_cols=59  Identities=27%  Similarity=0.406  Sum_probs=54.8

Q ss_pred             CccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhh
Q 026712           71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD  131 (234)
Q Consensus        71 ~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~  131 (234)
                      ...+++++|++  ++.++++++++.++++.|.+++...+||+|++|+++|+||.+|+.+.+
T Consensus       217 ~~~~v~dim~~--~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe~g~lvGiIT~~Dil~~i  275 (473)
T 2zy9_A          217 PRTRVAEIMNP--KVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVL  275 (473)
T ss_dssp             TTSBGGGTSBS--SCCCEESSSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred             CCCcHHHHhCC--CCeEEeCCCcHHHHHHHHHhcCCcEEEEEcCCCEEEEEEehHhhHHHH
Confidence            46689999987  799999999999999999999999999999999999999999998763

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=98.13  E-value=1.8e-06  Score=79.11  Aligned_cols=54  Identities=19%  Similarity=-0.001  Sum_probs=49.5

Q ss_pred             ccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhh
Q 026712           74 TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLAL  130 (234)
Q Consensus        74 ~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~  130 (234)
                      +++++|++  ++.++++++++.|+.+.|.+++.+.+||+ ++|+++|+||.+|+.+.
T Consensus       569 ~v~~iMt~--~pitV~~~~~l~ea~~~M~~~~i~~lpVv-e~G~lvGIVT~~Dll~~  622 (632)
T 3org_A          569 SLVVPCDV--SPIVVTSYSLVRQLHFLFVMLMPSMIYVT-ERGKLVGIVEREDVAYG  622 (632)
T ss_dssp             --CCSCCC--CCCEEETTCBHHHHHHHHHHTCCSEEEEE-ETTEEEEEEEGGGTEEC
T ss_pred             ccchhhcC--CCceecCCCcHHHHHHHHHhcCCCEEEEE-ECCEEEEEEehhhHHHH
Confidence            48899998  89999999999999999999999999999 67999999999999875

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=98.07  E-value=2.8e-06  Score=75.61  Aligned_cols=62  Identities=27%  Similarity=0.442  Sum_probs=4.3

Q ss_pred             CccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhc
Q 026712           71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS  132 (234)
Q Consensus        71 ~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~  132 (234)
                      ...++.++|++.+++.++++++++.+++++|.++++..+||+|++|+++|+||..|+++...
T Consensus       153 ~~~~v~~im~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~~  214 (494)
T 1vrd_A          153 LSKKIKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSVIE  214 (494)
T ss_dssp             --------------------------------------------------------CHHHHT
T ss_pred             CCCcHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHhhhc
Confidence            35689999985335889999999999999999999999999999999999999999998743

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=98.04  E-value=3.3e-06  Score=75.54  Aligned_cols=61  Identities=25%  Similarity=0.300  Sum_probs=42.5

Q ss_pred             CccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhh
Q 026712           71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD  131 (234)
Q Consensus        71 ~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~  131 (234)
                      ...++.++|.+..++.++.+++++.++.++|.+++...+||+|++|+++|+||.+|+++.+
T Consensus       171 ~~~~v~~vm~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~  231 (514)
T 1jcn_A          171 HTTLLSEVMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIARTDLKKNR  231 (514)
T ss_dssp             ----------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEESSSSCCC----CCCCSSCC
T ss_pred             CCCCHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCCcccEECCCCeEEEEEEHHHHHHHh
Confidence            4568999998533588999999999999999999999999999999999999999998764

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=98.00  E-value=2.7e-06  Score=75.62  Aligned_cols=58  Identities=38%  Similarity=0.573  Sum_probs=0.0

Q ss_pred             CccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhh
Q 026712           71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLAL  130 (234)
Q Consensus        71 ~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~  130 (234)
                      ...++.++|.+  ++.++++++++.+++++|.+++...+||+|++|+++|+||.+|+++.
T Consensus       148 ~~~~v~~im~~--~~~~v~~~~~l~eal~~m~~~~~~~lpVVde~g~lvGiiT~~Dil~~  205 (486)
T 2cu0_A          148 EGKLVKELMTK--EVITVPESIEVEEALKIMIENRIDRLPVVDERGKLVGLITMSDLVAR  205 (486)
T ss_dssp             ------------------------------------------------------------
T ss_pred             CCCCHHHHccC--CCeEECCcCcHHHHHHHHHHcCCCEEEEEecCCeEEEEEEHHHHHHh
Confidence            35679999997  78999999999999999999999999999999999999999999976

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=97.86  E-value=0.00015  Score=64.42  Aligned_cols=61  Identities=23%  Similarity=0.338  Sum_probs=54.6

Q ss_pred             CccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhc
Q 026712           71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS  132 (234)
Q Consensus        71 ~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~  132 (234)
                      ...+++++|++. +++++++++++.++++.|.+++...+||+|++++++|++|.+|+++.+.
T Consensus       150 ~~~~v~~im~~~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGivt~~Dil~~~~  210 (491)
T 1zfj_A          150 YNAPISEHMTSE-HLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIE  210 (491)
T ss_dssp             SSSBTTTSCCCS-CCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             CCCcHHHHcCCC-CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHHHHHHh
Confidence            466899999841 4789999999999999999999999999999999999999999998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	234
d2yzqa1	156	d.37.1.1 (A:123-278) Uncharacterized protein PH178	5e-22
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	6e-21
d2j9la1	169	d.37.1.1 (A:578-746) Chloride channel protein 5, C	7e-21
d1o50a3	145	d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Th	3e-19
d1o50a3	145	d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Th	2e-04
d2d4za3	160	d.37.1.1 (A:527-606,A:691-770) Chloride channel pr	1e-18
d2nyca1	140	d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's	2e-18
d2nyca1	140	d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's	1e-06
d2v8qe1	145	d.37.1.1 (E:182-326) 5'-AMP-activated protein kina	3e-18
d2v8qe1	145	d.37.1.1 (E:182-326) 5'-AMP-activated protein kina	3e-07
d2o16a3	139	d.37.1.1 (A:20-158) Hypothetical protein VC0737 {V	3e-18
d2yzia1	132	d.37.1.1 (A:4-135) Uncharacterized protein PH0107	2e-16
d2rc3a1	127	d.37.1.1 (A:23-149) Uncharacterized protein NE2398	5e-16
d1y5ha3	123	d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {M	2e-15
d1y5ha3	123	d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {M	1e-05
d3ddja2	135	d.37.1.1 (A:1-135) Uncharacterized protein SSO3205	3e-15
d2ooxe1	179	d.37.1.1 (E:3-181) Uncharacterized protein C1556.0	4e-15
d3ddja1	141	d.37.1.1 (A:136-276) Uncharacterized protein SSO32	7e-15
d1pvma4	142	d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Ar	8e-15
d2ouxa2	127	d.37.1.1 (A:136-262) Magnesium transporter MgtE {E	1e-13
d1pbja3	120	d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {A	1e-13
d1vr9a3	121	d.37.1.1 (A:1-121) Hypothetical protein TM0892, CB	2e-13
d1jr1a4	120	d.37.1.1 (A:113-232) Type II inosine monophosphate	3e-13
d1jr1a4	120	d.37.1.1 (A:113-232) Type II inosine monophosphate	4e-07
d2yvxa2	144	d.37.1.1 (A:132-275) Magnesium transporter MgtE {T	4e-13
d2yvxa2	144	d.37.1.1 (A:132-275) Magnesium transporter MgtE {T	0.003
d2yzqa2	122	d.37.1.1 (A:1-122) Uncharacterized protein PH1780	9e-13
d2ef7a1	127	d.37.1.1 (A:1-127) Uncharacterized protein ST2348	1e-12
d2ef7a1	127	d.37.1.1 (A:1-127) Uncharacterized protein ST2348	2e-05
d2ef7a1	127	d.37.1.1 (A:1-127) Uncharacterized protein ST2348	8e-04
d2ooxe2	153	d.37.1.1 (E:182-334) Uncharacterized protein C1556	2e-12
d1yava3	132	d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bac	5e-12
d1zfja4	126	d.37.1.1 (A:95-220) Type II inosine monophosphate	5e-11
d1zfja4	126	d.37.1.1 (A:95-220) Type II inosine monophosphate	6e-04
d2riha1	131	d.37.1.1 (A:2-132) Uncharacterized protein PAE2072	1e-10
d1lkvx_	213	a.118.14.1 (X:) FliG {Thermotoga maritima [TaxId:	2e-05

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 156

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 86.6 bits (213), Expect = 5e-22
 Identities = 31/154 (20%), Positives = 65/154 (42%), Gaps = 5/154 (3%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSI 133
            +  +  +   +  V   T +  AL+ L+       PV+D +  LVG+V + DLL    I
Sbjct: 5   EIEPYYQR--YVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEI 62

Query: 134 SGGNQNDTSLFPNVNSTWKTFNE---LQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAA 190
               ++      +        +     ++   +   K V ++MT   +V   +  + + A
Sbjct: 63  VRIMKSTELAASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVA 122

Query: 191 RLLLETKYRRLPVVDGYGKLVGLITRGNVVRAAL 224
             + +    +LPV+ G G L+GLI   ++++  +
Sbjct: 123 LKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKVLV 156

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 83.7 bits (206), Expect = 6e-21
 Identities = 25/151 (16%), Positives = 47/151 (31%), Gaps = 14/151 (9%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFP-VIDDDWKLVGVVSDYDLLALDS 132
              D +     L    T+  V +A   LV   +   P         VG+++  D + +  
Sbjct: 14  RCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILH 73

Query: 133 ISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARL 192
               +          +                   V         + +  N +L DA   
Sbjct: 74  RYYKSALVQIYELEEHKIETWRE------------VYLQDSFKPLVCISPNASLFDAVSS 121

Query: 193 LLETKYRRLPVVDG-YGKLVGLITRGNVVRA 222
           L+  K  RLPV+D   G  + ++T   +++ 
Sbjct: 122 LIRNKIHRLPVIDPESGNTLYILTHKRILKF 152

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.8 bits (206), Expect = 7e-21
 Identities = 30/161 (18%), Positives = 65/161 (40%), Gaps = 10/161 (6%)

Query: 74  TVGDFMTKKEDLHAV----KTTTTVDEALERLVEKRITGFPVI--DDDWKLVGVVSDYDL 127
              D M  + +   +    + + TV++    + E   +GFPV+   +  +LVG V   DL
Sbjct: 4   LAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDL 63

Query: 128 LALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLE 187
           +     +   Q+       +  T  +               + +++  +P  V + T +E
Sbjct: 64  IISIENARKKQDGVVSTSIIYFTEHSPPLPPYTPPTLK---LRNILDLSPFTVTDLTPME 120

Query: 188 DAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIKR 228
               +  +   R+  V    G+L+G+IT+ +V++   Q+  
Sbjct: 121 IVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKHIAQMAN 160

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

 Score = 78.9 bits (193), Expect = 3e-19
 Identities = 32/156 (20%), Positives = 69/156 (44%), Gaps = 15/156 (9%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSI 133
            V   ++       V+  T ++E ++R++E  +T    +  D KLVG++    LL +   
Sbjct: 5   DVCKLISL--KPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVS-- 60

Query: 134 SGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLL 193
                       +          ++  + +   K   ++M   P+ VH +T LE+A +L+
Sbjct: 61  ----------GFHFFGFIPKEELIRSSMKRLIAKNASEIMLD-PVYVHMDTPLEEALKLM 109

Query: 194 LETKYRRLPVVDGYGKLVGLITRGNVVRAALQIKRD 229
           ++   + +PVVD  G++VG +    ++ A  + +  
Sbjct: 110 IDNNIQEMPVVDEKGEIVGDLNSLEILLALWKGREK 145

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

 Score = 38.0 bits (87), Expect = 2e-04
 Identities = 18/56 (32%), Positives = 29/56 (51%)

Query: 167 KVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRA 222
           K V  L++  P VV E+T +E+    +LE    R   V    KLVG+I   ++++ 
Sbjct: 4   KDVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKV 59

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 160

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 77.4 bits (189), Expect = 1e-18
 Identities = 27/149 (18%), Positives = 51/149 (34%), Gaps = 3/149 (2%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSI 133
            VGD M +  D+ ++ +T+T  + L  L + ++  FP +D       + S         +
Sbjct: 12  QVGDIMVR--DVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLL 69

Query: 134 SGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLL 193
                           T +     ++             +  +P  + E T+L+    L 
Sbjct: 70  QRRISAYRRQPFEEMLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLF 129

Query: 194 LETKYRRLPVVDGYGKLVGLITRGNVVRA 222
                 R  V    GKLVG++    +  A
Sbjct: 130 SLLGLDRAYVTS-MGKLVGVVALAEIQAA 157

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 76.7 bits (188), Expect = 2e-18
 Identities = 29/151 (19%), Positives = 61/151 (40%), Gaps = 21/151 (13%)

Query: 73  YTVGDF-MTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD 131
             +GD  +  ++++ + + TT V + ++ L + R++  P+ID++  L+ V   YD+L L 
Sbjct: 6   IPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLI 65

Query: 132 SISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAAR 191
                N    S+   +                                  +N  L     
Sbjct: 66  KGGIYNDLSLSVGEALMRRSD--------------------DFEGVYTCTKNDKLSTIMD 105

Query: 192 LLLETKYRRLPVVDGYGKLVGLITRGNVVRA 222
            + + +  R  VVD  G+LVG++T  ++++ 
Sbjct: 106 NIRKARVHRFFVVDDVGRLVGVLTLSDILKY 136

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.8 bits (105), Expect = 1e-06
 Identities = 10/66 (15%), Positives = 24/66 (36%), Gaps = 1/66 (1%)

Query: 160 LLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNV 219
            L    G +   +           T + D  ++L + +   +P++D  G L+ +    +V
Sbjct: 3   FLKIPIGDL-NIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDV 61

Query: 220 VRAALQ 225
           +     
Sbjct: 62  LGLIKG 67

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 76.4 bits (187), Expect = 3e-18
 Identities = 32/150 (21%), Positives = 63/150 (42%), Gaps = 21/150 (14%)

Query: 74  TVGDFM-TKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS 132
           ++ +       ++  V+TTT V  AL   V+ R++  PV+D+  ++V + S +D++ L +
Sbjct: 10  SLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAA 69

Query: 133 ISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARL 192
               N  D S                     T             L  + +  LE     
Sbjct: 70  EKTYNNLDVS--------------------VTKALQHRSHYFEGVLKCYLHETLEAIINR 109

Query: 193 LLETKYRRLPVVDGYGKLVGLITRGNVVRA 222
           L+E +  RL VVD +  + G+++  ++++A
Sbjct: 110 LVEAEVHRLVVVDEHDVVKGIVSLSDILQA 139

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.0 bits (108), Expect = 3e-07
 Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 2/64 (3%)

Query: 73  YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS 132
                   +   +       T++  + RLVE  +    V+D+   + G+VS  D+L    
Sbjct: 84  LQHRSHYFE--GVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQALV 141

Query: 133 ISGG 136
           ++GG
Sbjct: 142 LTGG 145

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]} Length = 139

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

 Score = 76.1 bits (186), Expect = 3e-18
 Identities = 38/158 (24%), Positives = 64/158 (40%), Gaps = 22/158 (13%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSI 133
            V D MT+    H +  T T+++A   +    I   P++D + KL+G+VS  DLLA    
Sbjct: 3   KVEDMMTR--HPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLA---- 56

Query: 134 SGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLL 193
                          +   +     +  S      + ++M      V     L+++A  +
Sbjct: 57  ---------------AQESSLQRSAQGDSLAFETPLFEVMHTDVTSVAPQAGLKESAIYM 101

Query: 194 LETKYRRLPVVDGYGKLVGLITRGNVVRAALQIKRDGE 231
            + K   LPVV     LVG+IT  + V  A+ +    E
Sbjct: 102 QKHKIGCLPVVAK-DVLVGIITDSDFVTIAINLLELQE 138

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]} Length = 132

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 71.0 bits (173), Expect = 2e-16
 Identities = 33/152 (21%), Positives = 64/152 (42%), Gaps = 30/152 (19%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSI 133
            +  +MTK   L  VK +T+V EA   ++E  +    VI+DD  +VG  +  D++    +
Sbjct: 6   PIKVYMTK--KLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIV 63

Query: 134 SGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLL 193
            G   +                             V  +MT   +  + NT L +  R +
Sbjct: 64  PGLPYDIP---------------------------VERIMTRNLITANVNTPLGEVLRKM 96

Query: 194 LETKYRRLPVVDGYGKLVGLITRGNVVRAALQ 225
            E + + + + +  GK+VG+ T  +++ A+ +
Sbjct: 97  AEHRIKHILIEE-EGKIVGIFTLSDLLEASRR 127

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

 Score = 69.8 bits (170), Expect = 5e-16
 Identities = 32/152 (21%), Positives = 61/152 (40%), Gaps = 29/152 (19%)

Query: 74  TVGDFMTKK-EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS 132
           TV   + +K   + A+    +V  A++++    I    V+ D+   VG++++ D      
Sbjct: 3   TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKL-VGILTERDFSRKSY 61

Query: 133 ISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARL 192
           +      DT +   +                                V  N   ED   L
Sbjct: 62  LLDKPVKDTQVKEIMTRQVAY--------------------------VDLNNTNEDCMAL 95

Query: 193 LLETKYRRLPVVDGYGKLVGLITRGNVVRAAL 224
           + E + R LPV+D  GK++GL++ G++V+ A+
Sbjct: 96  ITEMRVRHLPVLDD-GKVIGLLSIGDLVKDAI 126

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 123

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 68.0 bits (165), Expect = 2e-15
 Identities = 31/149 (20%), Positives = 60/149 (40%), Gaps = 29/149 (19%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSI 133
           T  D M     +  V    T+  A + + E  I   P+  DD +L G+++D D++     
Sbjct: 2   TARDIMNA--GVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLA 59

Query: 134 SGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLL 193
           +G + N                              G+L   +   V  N ++++   ++
Sbjct: 60  AGLDPNTA--------------------------TAGELARDSIYYVDANASIQEMLNVM 93

Query: 194 LETKYRRLPVVDGYGKLVGLITRGNVVRA 222
            E + RR+PV+    +LVG++T  ++ R 
Sbjct: 94  EEHQVRRVPVISE-HRLVGIVTEADIARH 121

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 123

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 41.4 bits (96), Expect = 1e-05
 Identities = 15/57 (26%), Positives = 25/57 (43%)

Query: 169 VGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQ 225
             D+M      V E+  L  AA+ + E     LP+     +L G++T  ++V   L 
Sbjct: 3   ARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLA 59

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 135

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 68.1 bits (165), Expect = 3e-15
 Identities = 26/153 (16%), Positives = 57/153 (37%), Gaps = 21/153 (13%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSI 133
            +   M K  +   +     +  A +++ E  I    V ++   + G+++  D       
Sbjct: 2   NIETLMIK--NPPILSKEDRLGSAFKKINEGGIGRIIVANEK--IEGLLTTRD------- 50

Query: 134 SGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLL 193
                       +   ++   +  Q  L   +   + D MTP P+ V+  ++   A  ++
Sbjct: 51  ----------LLSTVESYCKDSCSQGDLYHISTTPIIDYMTPNPVTVYNTSDEFTAINIM 100

Query: 194 LETKYRRLPVVDGYGKLVGLITRGNVVRAALQI 226
           +   +  LPVVD   K VG++T    +     +
Sbjct: 101 VTRNFGSLPVVDINDKPVGIVTEREFLLLYKDL 133

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 179

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 68.9 bits (167), Expect = 4e-15
 Identities = 29/162 (17%), Positives = 57/162 (35%), Gaps = 13/162 (8%)

Query: 72  TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD 131
           + T  D +     L     T  V  +L  L    I   P+ D +        +     L 
Sbjct: 19  SRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEA-------NKFAGLLT 71

Query: 132 SISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAAR 191
                N        +         +  RLL     +     + P  + VH   +L DA  
Sbjct: 72  MADFVNVIKYYYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACL 131

Query: 192 LLLETKYRRLPVVDGYG-----KLVGLITRGNVVRA-ALQIK 227
            + +++ RR+P++D  G      +V ++T+  +++  ++  K
Sbjct: 132 AMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNCK 173

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 141

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 67.3 bits (163), Expect = 7e-15
 Identities = 30/159 (18%), Positives = 61/159 (38%), Gaps = 23/159 (14%)

Query: 73  YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS 132
           + V  FM+    +  +     +D+A++ ++ +     PVIDDD K+VG+V          
Sbjct: 2   FPVKVFMST--KVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIV---------- 49

Query: 133 ISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARL 192
                                    +       GKVV D+M    + + E  ++  AA  
Sbjct: 50  -----------TVVNAIKQLAKAVDKLDPDYFYGKVVKDVMVTNLVTIDELASVNRAAAE 98

Query: 193 LLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIKRDGE 231
           ++  +   L +++    + G+IT  +++ A   I    +
Sbjct: 99  MIVKRIGSLLILNKDNTIRGIITERDLLIALHHILVMEK 137

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 142

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 66.8 bits (162), Expect = 8e-15
 Identities = 28/149 (18%), Positives = 54/149 (36%), Gaps = 28/149 (18%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSI 133
            V   M    +   V   TTV +A++ + E  + G  V DD+   VG++S+  ++     
Sbjct: 4   RVEKIMNS--NFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIP 61

Query: 134 SGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLL 193
                ++  +   +                                   + +++D A  L
Sbjct: 62  RNKKPDEVPIRLVMRKPIPKV--------------------------KSDYDVKDVAAYL 95

Query: 194 LETKYRRLPVVDGYGKLVGLITRGNVVRA 222
            E    R  VVD  G++VG++T  ++ R 
Sbjct: 96  SENGLERCAVVDDPGRVVGIVTLTDLSRY 124

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

 Score = 63.7 bits (154), Expect = 1e-13
 Identities = 30/154 (19%), Positives = 58/154 (37%), Gaps = 40/154 (25%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEK-----RITGFPVIDDDWKLVGVVSDYDLL 128
           T G  MT   +  ++    TV  A+  L  +      I    V+D +  LVGV+S     
Sbjct: 2   TAGAIMTT--EFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVIS----- 54

Query: 129 ALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLED 188
                                       L+ L+   +  ++ D++    + VH   + ED
Sbjct: 55  ----------------------------LRDLIVNDDDTLIADILNERVISVHVGDDQED 86

Query: 189 AARLLLETKYRRLPVVDGYGKLVGLITRGNVVRA 222
            A+ + +  +  +PV D    L+G++T  +++  
Sbjct: 87  VAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDV 120

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 63.0 bits (152), Expect = 1e-13
 Identities = 22/150 (14%), Positives = 52/150 (34%), Gaps = 31/150 (20%)

Query: 75  VGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSIS 134
           V D M    D+  +  T ++++ L   VE       V+ +  ++                
Sbjct: 2   VEDVMVT--DVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRVG--------------- 44

Query: 135 GGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLL 194
                          T     E            V ++M    + +     +++AA  ++
Sbjct: 45  -------------IVTTWDVLEAIAEGDDLAEVKVWEVMERDLVTISPRATIKEAAEKMV 91

Query: 195 ETKYRRLPVVDGYGKLVGLITRGNVVRAAL 224
           +    RL V +   +++G+I+  +++RA +
Sbjct: 92  KNVVWRLLVEED-DEIIGVISATDILRAKM 120

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]} Length = 121

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

 Score = 63.0 bits (152), Expect = 2e-13
 Identities = 33/151 (21%), Positives = 56/151 (37%), Gaps = 35/151 (23%)

Query: 75  VGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSIS 134
           V  ++T+  D   V+ + TV E L R+ + +     V D +    GVV+           
Sbjct: 3   VKKWVTQ--DFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVN----------- 49

Query: 135 GGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLL 194
                                  + LL       V + ++     VHE  N+  A  L L
Sbjct: 50  ----------------------KEDLLDLDLDSSVFNKVSLPDFFVHEEDNITHALLLFL 87

Query: 195 ETKYRRLPVVDGYGKLVGLITRGNVVRAALQ 225
           E +   LPVVD   +L G ++  + + A ++
Sbjct: 88  EHQEPYLPVVDEEMRLKGAVSLHDFLEALIE 118

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 62.1 bits (150), Expect = 3e-13
 Identities = 24/138 (17%), Positives = 46/138 (33%), Gaps = 31/138 (22%)

Query: 88  VKTTTTVDEALERLVEKRITGFPVIDD---DWKLVGVVSDYDLLALDSISGGNQNDTSLF 144
           +     V +  E        G P+ D      +LVG++S  D+  L              
Sbjct: 9   LSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKE------------ 56

Query: 145 PNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVV 204
                  +   E+                    +V      L++A  +L  +K  +LP+V
Sbjct: 57  ---EEHDRFLEEIMT-------------KREDLVVAPAGITLKEANEILQRSKKGKLPIV 100

Query: 205 DGYGKLVGLITRGNVVRA 222
           +   +LV +I R ++ + 
Sbjct: 101 NENDELVAIIARTDLKKN 118

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 45.5 bits (107), Expect = 4e-07
 Identities = 16/63 (25%), Positives = 31/63 (49%)

Query: 66  VPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDY 125
           +        + + MTK+EDL       T+ EA E L   +    P+++++ +LV +++  
Sbjct: 54  LKEEEHDRFLEEIMTKREDLVVAPAGITLKEANEILQRSKKGKLPIVNENDELVAIIART 113

Query: 126 DLL 128
           DL 
Sbjct: 114 DLK 116

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]} Length = 144

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

 Score = 62.5 bits (151), Expect = 4e-13
 Identities = 40/154 (25%), Positives = 62/154 (40%), Gaps = 40/154 (25%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEK-----RITGFPVIDDDWKLVGVVSDYDLL 128
             G  MT   +  AV+   TV+E L  L         I    V+D+  +L GV+S  DL+
Sbjct: 2   EAGGLMTP--EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLI 59

Query: 129 ALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLED 188
             D                                     V ++M P  + V  +T+ E+
Sbjct: 60  VAD---------------------------------PRTRVAEIMNPKVVYVRTDTDQEE 86

Query: 189 AARLLLETKYRRLPVVDGYGKLVGLITRGNVVRA 222
            ARL+ +  +  LPVVD  G+LVG++T  +V+  
Sbjct: 87  VARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDV 120

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]} Length = 144

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

 Score = 34.8 bits (79), Expect = 0.003
 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 57  HNGVGITNSVPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDW 116
             GV     +   +    V + M  K      +T T  +E    + +   T  PV+D++ 
Sbjct: 49  LKGVLSLRDLIVADPRTRVAEIMNPKVVYV--RTDTDQEEVARLMADYDFTVLPVVDEEG 106

Query: 117 KLVGVVSDYDLL 128
           +LVG+V+  D+L
Sbjct: 107 RLVGIVTVDDVL 118

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 122

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 61.1 bits (147), Expect = 9e-13
 Identities = 36/151 (23%), Positives = 60/151 (39%), Gaps = 35/151 (23%)

Query: 75  VGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSIS 134
           V   MT+  +   +    T + ALE   + ++  FPV++ + K                 
Sbjct: 3   VKTIMTQ--NPVTITLPATRNYALELFKKYKVRSFPVVNKEGK----------------- 43

Query: 135 GGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLL 194
                  S+   + +  +                   L+     VV EN  L+ AA+L+L
Sbjct: 44  --LVGIISVKRILVNPDEEQLA--------------MLVKRDVPVVKENDTLKKAAKLML 87

Query: 195 ETKYRRLPVVDGYGKLVGLITRGNVVRAALQ 225
           E  YRR+ VVD  GK VG++T G+++R    
Sbjct: 88  EYDYRRVVVVDSKGKPVGILTVGDIIRRYFA 118

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

 Score = 60.7 bits (146), Expect = 1e-12
 Identities = 25/149 (16%), Positives = 49/149 (32%), Gaps = 31/149 (20%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSI 133
            V ++M     + +V     +++  + + EK I    V+D +  +  +     + A+   
Sbjct: 5   IVKEYMKT--QVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVGIITERDIVKAIGKG 62

Query: 134 SGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLL 193
                           T                               E++ +  A  L+
Sbjct: 63  KSLETKAEEFMTASLITI-----------------------------REDSPITGALALM 93

Query: 194 LETKYRRLPVVDGYGKLVGLITRGNVVRA 222
            +   R LPVVD  G L G+I+  ++ RA
Sbjct: 94  RQFNIRHLPVVDDKGNLKGIISIRDITRA 122

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

 Score = 41.0 bits (95), Expect = 2e-05
 Identities = 11/41 (26%), Positives = 21/41 (51%)

Query: 167 KVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGY 207
           ++V + M    + V ++  L D A+++ E     + VVDG 
Sbjct: 4   EIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGN 44

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

 Score = 36.4 bits (83), Expect = 8e-04
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 99  ERLVEKRITGFPVIDDDWKLVGVVSDYDLL-ALDSI 133
             + +  I   PV+DD   L G++S  D+  A+D +
Sbjct: 91  ALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDDM 126

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 153

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 60.7 bits (146), Expect = 2e-12
 Identities = 23/151 (15%), Positives = 50/151 (33%), Gaps = 21/151 (13%)

Query: 75  VGDFMT-KKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSI 133
           +         +L      T V + ++ L EK I+  P+++ +  L+ V    D++ L   
Sbjct: 3   LNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQD 62

Query: 134 SGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLL 193
              +  D S+   +                                      L+     +
Sbjct: 63  GDYSNLDLSVGEALLKRPA--------------------NFDGVHTCRATDRLDGIFDAI 102

Query: 194 LETKYRRLPVVDGYGKLVGLITRGNVVRAAL 224
             ++  RL VVD   KL G+++  +++   +
Sbjct: 103 KHSRVHRLFVVDENLKLEGILSLADILNYII 133

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]} Length = 132

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

 Score = 59.3 bits (142), Expect = 5e-12
 Identities = 23/149 (15%), Positives = 46/149 (30%), Gaps = 24/149 (16%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSI 133
           TVG FM + + +  V+    ++ AL  L +   T  PV+D  ++L G++    ++     
Sbjct: 3   TVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFG 62

Query: 134 SGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLL 193
               + +      V     T                             + N        
Sbjct: 63  LERIEFEKLDQITVEEVMLTDIP------------------------RLHINDPIMKGFG 98

Query: 194 LETKYRRLPVVDGYGKLVGLITRGNVVRA 222
           +      + V +      G+ TR  V++ 
Sbjct: 99  MVINNGFVCVENDEQVFEGIFTRRVVLKE 127

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]} Length = 126

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 56.4 bits (135), Expect = 5e-11
 Identities = 34/146 (23%), Positives = 60/146 (41%), Gaps = 35/146 (23%)

Query: 79  MTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDW--KLVGVVSDYDLLALDSISGG 136
           +    D   +     V EA E +   RI+G P+++     KLVG++++ D+         
Sbjct: 3   VII--DPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDM--------- 51

Query: 137 NQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLET 196
                                 R +S  N  +   + +   +     T+LE A R+L E 
Sbjct: 52  ----------------------RFISDYNAPISEHMTSEHLVTAAVGTDLETAERILHEH 89

Query: 197 KYRRLPVVDGYGKLVGLITRGNVVRA 222
           +  +LP+VD  G+L GLIT  ++ + 
Sbjct: 90  RIEKLPLVDNSGRLSGLITIKDIEKV 115

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]} Length = 126

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 36.4 bits (83), Expect = 6e-04
 Identities = 21/119 (17%), Positives = 39/119 (32%), Gaps = 14/119 (11%)

Query: 18  NGVINSVPHLQLPITVATPSHLS--------KRLRFFTVSREVKAFAHNGVGITNSVPPR 69
           NGVI        P  +     +S         R+    +   +      G+     +   
Sbjct: 1   NGVIID------PFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFI 54

Query: 70  NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
           +            E L      T ++ A   L E RI   P++D+  +L G+++  D+ 
Sbjct: 55  SDYNAPISEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIE 113

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]} Length = 131

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

 Score = 55.4 bits (132), Expect = 1e-10
 Identities = 19/151 (12%), Positives = 49/151 (32%), Gaps = 33/151 (21%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVID--DDWKLVGVVSDYDLLALD 131
              + + +     ++  T T+ E    L + R+    +    +  + V V          
Sbjct: 2   RTSELLKR--PPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAV---------- 49

Query: 132 SISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAAR 191
                                  + L+ +  + +       +  +P+ V +   +  AA 
Sbjct: 50  -------------------VSERDILRAVAQRLDLDGPAMPIANSPITVLDTDPVHVAAE 90

Query: 192 LLLETKYRRLPVVDGYGKLVGLITRGNVVRA 222
            +     R + VV+  G+LVG+++  ++   
Sbjct: 91  KMRRHNIRHVVVVNKNGELVGVLSIRDLCFE 121

>d1lkvx_ a.118.14.1 (X:) FliG {Thermotoga maritima [TaxId: 2336]} Length = 213

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: FliG
family: FliG
domain: FliG
species: Thermotoga maritima [TaxId: 2336]

 Score = 42.1 bits (98), Expect = 2e-05
 Identities = 11/101 (10%), Positives = 37/101 (36%), Gaps = 7/101 (6%)

Query: 138 QNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETK 197
           Q +  L   +      F ++ +L  ++   V+ ++ T    +  +  + E   ++     
Sbjct: 108 QENPELADEIRRRMFVFEDILKLDDRSIQLVLREVDTRDLALALKGASDELKEKIFKNMS 167

Query: 198 YRRLPVVDGYGKLVGLIT-------RGNVVRAALQIKRDGE 231
            R   ++    + +G +        +  ++    +++  GE
Sbjct: 168 KRAAALLKDELEYMGPVRLKDVEEAQQKIINIIRRLEEAGE 208

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	234
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.91
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.91
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.9
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.9
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.9
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.9
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.9
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.9
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.89
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.89
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.89
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.88
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.88
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.87
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.86
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.86
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.86
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	99.85
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.85
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	99.83
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	99.83
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	99.83
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	99.82
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.81
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.8
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	99.77
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.15
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.06
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	99.03
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.01
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.0
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	98.99
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	98.98
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	98.97
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	98.97
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	98.95
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	98.87
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	98.86
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	98.84
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	98.83
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	98.83
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	98.83
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	98.82
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	98.73
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	98.73
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	98.72
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	98.69
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	98.67
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	98.57
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	98.51
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	98.44
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	98.4
d1lkvx_	213	FliG {Thermotoga maritima [TaxId: 2336]}	86.44
d1lkvx_	213	FliG {Thermotoga maritima [TaxId: 2336]}	83.95

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.91  E-value=3.7e-24  Score=161.31  Aligned_cols=150  Identities=21%  Similarity=0.325  Sum_probs=113.3

Q ss_pred             CccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccch
Q 026712           71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNST  150 (234)
Q Consensus        71 ~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~  150 (234)
                      ++.+|.++|.+  +++++++++++.+|+++|.+++++.+||+|++|+++|+||..|+.+................ ....
T Consensus         2 ~~~~v~~~m~r--~v~~v~~~~~l~~a~~~m~~~~~~~lPVvd~~~~lvG~it~~Dl~~~~~~~~~~~~~~~~~~-~~~~   78 (156)
T d2yzqa1           2 KGVEIEPYYQR--YVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTELAAS-SEEE   78 (156)
T ss_dssp             GGCBSTTTSBS--CCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGGGCGGGCC---------------
T ss_pred             CCCCHHHHhcC--CCeEECCcCcHHHHHHHHHHcCCCEEEEEeCCCCceeEEeeeechhhhcccccccccccccc-hhhh
Confidence            47789999998  89999999999999999999999999999999999999999999876433222221111100 0001


Q ss_pred             hh----hhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHH
Q 026712          151 WK----TFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAA  223 (234)
Q Consensus       151 ~~----~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l  223 (234)
                      +.    ...............++.++|+++++++.+++++.++++.|.+++++++||+|++|+++|+||++||++++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd~~g~lvGivt~~Dil~~l  155 (156)
T d2yzqa1          79 WILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKVL  155 (156)
T ss_dssp             ------------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEEEEEEEHHHHGGGG
T ss_pred             hhhhhhhhhhHHHhhhcccCCEeehhcccCceEECcccccHHHHHHHHHcCeeEEEEEeCCCEEEEEEEHHHHHHHh
Confidence            10    00122333334567789999999999999999999999999999999999999999999999999999875

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.91  E-value=6.8e-24  Score=154.74  Aligned_cols=119  Identities=25%  Similarity=0.391  Sum_probs=109.8

Q ss_pred             ccccccccCCCceeecCCCCHHHHHHHHHhC-----CCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCcc
Q 026712           74 TVGDFMTKKEDLHAVKTTTTVDEALERLVEK-----RITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVN  148 (234)
Q Consensus        74 ~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~-----~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~  148 (234)
                      +++.+|++  +++++++++++.+|++.|++.     +++.+||+|++++++|+++.+++...                  
T Consensus         2 taG~iM~~--d~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~~l~~~------------------   61 (127)
T d2ouxa2           2 TAGAIMTT--EFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVN------------------   61 (127)
T ss_dssp             BHHHHCBS--CCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTTS------------------
T ss_pred             ChhHhCCC--CcEEECCCCcHHHHHHHhHhhcccccceeeeEEEecCCeEEEEEEeeccccc------------------
Confidence            68899999  999999999999999999876     46889999999999999999999753                  


Q ss_pred             chhhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHhh
Q 026712          149 STWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIK  227 (234)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~~  227 (234)
                                     ....++.++|.++++++.+++++.+|++.|.+++++++||||++|+++|+||..||++.+.+..
T Consensus        62 ---------------~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lPVVD~~g~lvGiIt~~Dil~~i~eea  125 (127)
T d2ouxa2          62 ---------------DDDTLIADILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVIDDEA  125 (127)
T ss_dssp             ---------------CTTSBHHHHSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHH
T ss_pred             ---------------cccEEhhhhccCCCccCCCCCCHHHHHHHHHHhCCEEEEEEeCCCEEEEEEEHHHHHHHHHHHh
Confidence                           3567899999999999999999999999999999999999998999999999999999987654

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.90  E-value=2.6e-23  Score=150.35  Aligned_cols=119  Identities=29%  Similarity=0.383  Sum_probs=111.7

Q ss_pred             cccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhh
Q 026712           73 YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWK  152 (234)
Q Consensus        73 ~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~  152 (234)
                      ++|+++|.+  ++.++.+++++.+|++.|.+.+.+.+||+|++|+++|+++.+|+.+.                      
T Consensus         1 m~v~~~m~~--~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~~~~~~Gii~~~dl~~~----------------------   56 (121)
T d1vr9a3           1 MKVKKWVTQ--DFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDL----------------------   56 (121)
T ss_dssp             CBGGGGCBS--CSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTS----------------------
T ss_pred             CCchhhhcC--CCeEECCCCCHHHHHHhhhhcCcEEEEEEeCCceeEEEeehhhhhhh----------------------
Confidence            478999998  89999999999999999999999999999999999999999999864                      


Q ss_pred             hhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHh
Q 026712          153 TFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQI  226 (234)
Q Consensus       153 ~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~  226 (234)
                                 ....++.++|..+++++++++++.++++.|.+++.+.+||+|++|+++|+||..|+++.+.+.
T Consensus        57 -----------~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvde~g~~~Gvit~~dil~~l~~~  119 (121)
T d1vr9a3          57 -----------DLDSSVFNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEA  119 (121)
T ss_dssp             -----------CTTSBSGGGCBCTTCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHHHS
T ss_pred             -----------hccccccccccCccEEECCCCCHHHHHHHHHhcCceeeeeECCCCeEEEEEEHHHHHHHHHHh
Confidence                       345789999999999999999999999999999999999999999999999999999998875

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.90  E-value=1.9e-24  Score=156.57  Aligned_cols=120  Identities=33%  Similarity=0.506  Sum_probs=92.7

Q ss_pred             cccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhh
Q 026712           73 YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWK  152 (234)
Q Consensus        73 ~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~  152 (234)
                      ++|+++|.+  +++++++++++.+|+++|.+++++.+||+|++|+++|+||.+|++..                      
T Consensus         1 m~v~diM~~--~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~G~it~~dl~~~----------------------   56 (122)
T d2yzqa2           1 MRVKTIMTQ--NPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRILVN----------------------   56 (122)
T ss_dssp             CBHHHHSEE--SCCCEESSCC------------CCEEEEECTTCCEEEEEESSCC-------------------------
T ss_pred             CCcccccCC--CCEEECCcCcHHHHHHHHHHcCCcEEEEEeccccchhhhhcchhhhh----------------------
Confidence            468999998  89999999999999999999999999999999999999999999864                      


Q ss_pred             hhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHhh
Q 026712          153 TFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIK  227 (234)
Q Consensus       153 ~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~~  227 (234)
                                 ....++.++|.++++++.+++++.++++.|.+++++++||+|++|+++|+||.+||++.+.+..
T Consensus        57 -----------~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~liGiit~~dil~~~~~~~  120 (122)
T d2yzqa2          57 -----------PDEEQLAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAKS  120 (122)
T ss_dssp             ------------------CCCBSCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTC
T ss_pred             -----------hcccchhhccccceeecchhhHHHHHHHHHHHcCcEEEEEEeCCCEEEEEEEHHHHHHHHHhHh
Confidence                       2346789999999999999999999999999999999999999999999999999999876653

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.90  E-value=9.5e-24  Score=156.87  Aligned_cols=125  Identities=24%  Similarity=0.304  Sum_probs=112.6

Q ss_pred             cccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhh
Q 026712           73 YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWK  152 (234)
Q Consensus        73 ~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~  152 (234)
                      ++|+++|++  ++.++++++++.+|++.|.+++.+.+||+|++|+++|++|.+|+++.....+..               
T Consensus         3 m~v~dim~~--~~~~v~~~~tl~~a~~~m~~~~~~~~~V~d~~~~~~Giit~~di~~~~~~~~~~---------------   65 (142)
T d1pvma4           3 MRVEKIMNS--NFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKK---------------   65 (142)
T ss_dssp             CBGGGTSBT--TCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGGCCC---------------
T ss_pred             EEHHHhCCC--CCcEECCcCcHHHHHHHHHHCCCceEeeeccCCcccceEEeechhhhhhhhccc---------------
Confidence            579999998  899999999999999999999999999999999999999999998764322211               


Q ss_pred             hhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHH
Q 026712          153 TFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQ  225 (234)
Q Consensus       153 ~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~  225 (234)
                                 ....+++++|+++++++.+++++.+|++.|.+++++++||+|++|+++|+||..||++++.+
T Consensus        66 -----------~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~l~Giit~~Dil~~l~~  127 (142)
T d1pvma4          66 -----------PDEVPIRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLSR  127 (142)
T ss_dssp             -----------GGGSBGGGTSBSSCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTSCH
T ss_pred             -----------ccccccccccccccccccchhhHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHHHHhh
Confidence                       23468999999999999999999999999999999999999999999999999999997754

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.90  E-value=4.3e-24  Score=154.93  Aligned_cols=122  Identities=25%  Similarity=0.435  Sum_probs=107.8

Q ss_pred             cccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhh
Q 026712           73 YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWK  152 (234)
Q Consensus        73 ~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~  152 (234)
                      ++++++|.+  +++++.+++++.+|++.|.+++++.+||+|++|+++|++|.+|+.+.....+..               
T Consensus         1 tt~~diM~~--~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~~~Giit~~Di~~~~~~~~~~---------------   63 (123)
T d1y5ha3           1 TTARDIMNA--GVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLD---------------   63 (123)
T ss_dssp             CCHHHHSEE--TCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGGTCC---------------
T ss_pred             CCHHHhcCC--CCcEECCcCcHHHHHHHHHHcCCCceEEEeccchhhhhhhhhhHhhhhhhcCCC---------------
Confidence            478999998  899999999999999999999999999999999999999999997653222211               


Q ss_pred             hhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHH
Q 026712          153 TFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAA  223 (234)
Q Consensus       153 ~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l  223 (234)
                                 .....+.++|.++++++.+++++.+|++.|.+++++++||+| +|+++|+||..||++++
T Consensus        64 -----------~~~~~v~~im~~~~~~v~~~~~~~~~~~~m~~~~~~~lpVvd-~~~lvGiit~~Dil~~l  122 (123)
T d1y5ha3          64 -----------PNTATAGELARDSIYYVDANASIQEMLNVMEEHQVRRVPVIS-EHRLVGIVTEADIARHL  122 (123)
T ss_dssp             -----------TTTSBHHHHHTTCCCCEETTCCHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHTC
T ss_pred             -----------cccceEEEEeeccceeeeecchHHHHHHHHHHcCceEEEEEE-CCEEEEEEEHHHHHhhC
Confidence                       234568899999999999999999999999999999999999 68999999999999863

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.90  E-value=3.5e-23  Score=151.86  Aligned_cols=127  Identities=26%  Similarity=0.367  Sum_probs=113.8

Q ss_pred             ccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchh
Q 026712           72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTW  151 (234)
Q Consensus        72 ~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~  151 (234)
                      ..+|+++|++  ++.++++++++.+|++.|.+++++.+||+|++|+++|+||..|+++.+.....               
T Consensus         4 ~~pV~~im~~--~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~~~~---------------   66 (132)
T d2yzia1           4 KAPIKVYMTK--KLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGL---------------   66 (132)
T ss_dssp             TSBGGGTCBC--CCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCC---------------
T ss_pred             CCcHHHHcCC--CCeEECCcCcHHHHHHHHHHcCCcEEEEecccceeeeeeeHHHHHHHHhhccC---------------
Confidence            3479999998  89999999999999999999999999999999999999999999876432221               


Q ss_pred             hhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHhhh
Q 026712          152 KTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIKR  228 (234)
Q Consensus       152 ~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~~~  228 (234)
                                  ....+++++|.++++++.+++++.++++.|.+++++++||++ +|+++|+||..|+++.+.+..+
T Consensus        67 ------------~~~~~v~~im~~~~~~v~~~~~~~~~~~~m~~~~~~~l~V~~-~~~~vGivt~~Dil~a~~~~le  130 (132)
T d2yzia1          67 ------------PYDIPVERIMTRNLITANVNTPLGEVLRKMAEHRIKHILIEE-EGKIVGIFTLSDLLEASRRRLE  130 (132)
T ss_dssp             ------------CTTSBGGGTCBCSCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHCCSC
T ss_pred             ------------ccceeEeecccccccccCcchHHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHHHHc
Confidence                        245789999999999999999999999999999999999887 7999999999999999887654

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.90  E-value=1.1e-23  Score=155.90  Aligned_cols=135  Identities=28%  Similarity=0.328  Sum_probs=114.3

Q ss_pred             cccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhh
Q 026712           73 YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWK  152 (234)
Q Consensus        73 ~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~  152 (234)
                      ++|+++|++  ++.++.+++++.+|++.|.+++++.+||+|++|+++|+||.+|+++..........             
T Consensus         2 i~v~diM~~--~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~~~~~~Giit~~dl~~~~~~~~~~~~-------------   66 (139)
T d2o16a3           2 IKVEDMMTR--HPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSA-------------   66 (139)
T ss_dssp             CBGGGTSEE--SCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHCC----------------
T ss_pred             EEHHHhCcC--CCeEECCcCCHHHHHHHHHHcCCCeeeeecccccccccccHHHHHHHHHhhhhhhh-------------
Confidence            479999998  89999999999999999999999999999999999999999999876432211110             


Q ss_pred             hhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHhhhh
Q 026712          153 TFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIKRD  229 (234)
Q Consensus       153 ~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~~~~  229 (234)
                            .........++.++|.++++++++++++.+|++.|.+++++++||+| +|+++|+||..||++++.+....
T Consensus        67 ------~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~lvGiit~~Dil~~~~~~~~~  136 (139)
T d2o16a3          67 ------QGDSLAFETPLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVA-KDVLVGIITDSDFVTIAINLLEL  136 (139)
T ss_dssp             ------------CCCBHHHHSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEE-TTEEEEEECHHHHHHHHHHHHHH
T ss_pred             ------cccccccccchhHhhccccccccccchHHHHHHHHHHcCceEEEEEE-CCEEEEEEEHHHHHHHHHHHHhh
Confidence                  00112356789999999999999999999999999999999999999 58999999999999999887543

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.89  E-value=7e-23  Score=149.23  Aligned_cols=124  Identities=24%  Similarity=0.404  Sum_probs=112.4

Q ss_pred             ccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchh
Q 026712           72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTW  151 (234)
Q Consensus        72 ~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~  151 (234)
                      +..|+++|++  +++++++++++.+|.++|.+++++.+||+|+ ++++|+++.+|+.+.+...                 
T Consensus         3 ~~~V~d~m~~--~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d~-~~~~Givt~~dl~~~~~~~-----------------   62 (127)
T d2ef7a1           3 EEIVKEYMKT--QVISVTKDAKLNDIAKVMTEKNIGSVIVVDG-NKPVGIITERDIVKAIGKG-----------------   62 (127)
T ss_dssp             CCBGGGTSBC--SCCEEETTCBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHHHTT-----------------
T ss_pred             ccCHHHhCCC--CCeEECCcCcHHHHHHHHHHcCCceEEeecc-cchhhhcchhHHHHHHHhh-----------------
Confidence            5679999998  8999999999999999999999999999985 7999999999998864321                 


Q ss_pred             hhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHh
Q 026712          152 KTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQI  226 (234)
Q Consensus       152 ~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~  226 (234)
                                 .....++.++|.+++.++.+++++.+|++.|.+++++++||+|++|+++|+||..||++.+.+.
T Consensus        63 -----------~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGiit~~Dll~~i~~~  126 (127)
T d2ef7a1          63 -----------KSLETKAEEFMTASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDDM  126 (127)
T ss_dssp             -----------CCTTCBGGGTSEECCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHH
T ss_pred             -----------ccccchhhhhhhhhccccccccchhHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHHHhh
Confidence                       1345789999999999999999999999999999999999999999999999999999999875

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.89  E-value=2.3e-23  Score=152.85  Aligned_cols=130  Identities=19%  Similarity=0.254  Sum_probs=112.8

Q ss_pred             cccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhh
Q 026712           73 YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWK  152 (234)
Q Consensus        73 ~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~  152 (234)
                      .+|+++|.+.+++.++.+++++.+|++.|.+++++++||+|++|+++|+++.+|+++.+.......              
T Consensus         2 ~tv~~~mip~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~~~~~vGiit~~di~~~~~~~~~~~--------------   67 (132)
T d1yava3           2 ATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLERIE--------------   67 (132)
T ss_dssp             CBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBCSSSBC--------------
T ss_pred             CCHHHccccccceEEEcCCCCHHHHHHHHHhhCCCceEEeecccccccEEEcchhHHHhhcccccc--------------
Confidence            479999987778999999999999999999999999999999999999999999998754322110              


Q ss_pred             hhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHh
Q 026712          153 TFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQI  226 (234)
Q Consensus       153 ~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~  226 (234)
                              .......++.++|.++++++.+++++.+++..|.+++  .+||+|++|+++|+||.+|+++++.+.
T Consensus        68 --------~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~--~l~Vvd~~~~~~Givt~~dil~~l~~~  131 (132)
T d1yava3          68 --------FEKLDQITVEEVMLTDIPRLHINDPIMKGFGMVINNG--FVCVENDEQVFEGIFTRRVVLKELNKH  131 (132)
T ss_dssp             --------GGGTTTSBHHHHSBCSCCEEETTSBHHHHHHHTTTCS--EEEEECTTCBEEEEEEHHHHHHHHHHH
T ss_pred             --------ccccccccccccccccccccccchhHHHHHHHHHhCC--EEEEEccCCEEEEEEEHHHHHHHHHhh
Confidence                    0123457899999999999999999999999998764  599999999999999999999999875

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.89  E-value=1.9e-23  Score=155.59  Aligned_cols=120  Identities=33%  Similarity=0.461  Sum_probs=110.4

Q ss_pred             ccccccccCCCceeecCCCCHHHHHHHHHhC-----CCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCcc
Q 026712           74 TVGDFMTKKEDLHAVKTTTTVDEALERLVEK-----RITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVN  148 (234)
Q Consensus        74 ~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~-----~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~  148 (234)
                      +++++|++  +++++++++|+.+|++.|+++     ++..+||+|++|+++|+++.+|+.+.                  
T Consensus         2 taG~iM~~--~~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~dl~~~------------------   61 (144)
T d2yvxa2           2 EAGGLMTP--EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA------------------   61 (144)
T ss_dssp             SSGGGCBS--CCCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEBCTTCBBCCBCBHHHHTTS------------------
T ss_pred             CcccccCC--CCEEECCCCcHHHHHHHHHHhcccccceeeeEEecCCCCEecccchhhhhhc------------------
Confidence            58999999  999999999999999999776     36789999999999999999999764                  


Q ss_pred             chhhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHhhh
Q 026712          149 STWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIKR  228 (234)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~~~  228 (234)
                                     ....++.++|.++++++.+++++.+|++.|.+++++++||||++|+++|+||..||++.+.+...
T Consensus        62 ---------------~~~~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lPVVd~~g~lvGiIt~~Dil~~l~~e~~  126 (144)
T d2yvxa2          62 ---------------DPRTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEAEAT  126 (144)
T ss_dssp             ---------------CTTCBSTTTSBSSCCCEESSCCHHHHHHHHHHSCCSEEEEECSSCBEEEEEEHHHHHHHHHHHHH
T ss_pred             ---------------ccccchHHhcccCCccCCCCChHHHHHHHHHHcCCCEEEEEeECCEEEEEEEHHHHHHHHHHHhH
Confidence                           34578999999999999999999999999999999999999988999999999999999887654

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.88  E-value=3.2e-22  Score=145.67  Aligned_cols=123  Identities=28%  Similarity=0.460  Sum_probs=107.8

Q ss_pred             ccccccccC-CCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhh
Q 026712           74 TVGDFMTKK-EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWK  152 (234)
Q Consensus        74 ~v~~im~~~-~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~  152 (234)
                      +|+++|..+ .+++++++++++.+|+++|.+++++.+||++ +++++|++|.+|+++........               
T Consensus         3 tV~dim~~k~~~v~~i~~~~tl~~a~~~m~~~~~~~vpV~~-~~~~vGiit~~Di~~~~~~~~~~---------------   66 (127)
T d2rc3a1           3 TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMK-DEKLVGILTERDFSRKSYLLDKP---------------   66 (127)
T ss_dssp             BHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHGGGSSSC---------------
T ss_pred             cHHHHHccCCCccEEECCcCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEccchhhhhhhhccc---------------
Confidence            688998742 3789999999999999999999999999998 68999999999998764322211               


Q ss_pred             hhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHH
Q 026712          153 TFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAAL  224 (234)
Q Consensus       153 ~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~  224 (234)
                                 ....++.++|.++++++.+++++.+|++.|.+++++++||+| +|+++|+||..|+++++.
T Consensus        67 -----------~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~~GiIt~~Dil~~~i  126 (127)
T d2rc3a1          67 -----------VKDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDAI  126 (127)
T ss_dssp             -----------GGGSBGGGTSBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred             -----------ccceeEeeeccceeEEeccCccHHHHHHHHHHCCCcEEEEEE-CCEEEEEEEHHHHHHHHh
Confidence                       234689999999999999999999999999999999999999 699999999999999875

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.88  E-value=1.4e-22  Score=150.08  Aligned_cols=134  Identities=22%  Similarity=0.328  Sum_probs=115.4

Q ss_pred             cccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhh
Q 026712           73 YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWK  152 (234)
Q Consensus        73 ~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~  152 (234)
                      .+|+++|++  ++.++++++++.+|.++|.+++++.+||+|++++++|+++..|+.+.+.....                
T Consensus         2 ~~V~~iMt~--~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~~~~~~g~i~~~di~~~~~~~~~----------------   63 (141)
T d3ddja1           2 FPVKVFMST--KVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVD----------------   63 (141)
T ss_dssp             CBHHHHSBC--SCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHHH----------------
T ss_pred             EeeHHhCcC--CCeEEcCcCcHHHHHHHHHHcCCCeeecccccCccccccccccchhhhhcccc----------------
Confidence            479999999  89999999999999999999999999999999999999999999875321100                


Q ss_pred             hhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHhhhh
Q 026712          153 TFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIKRD  229 (234)
Q Consensus       153 ~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~~~~  229 (234)
                           ..........++.++|+++++++.+++++.++++.|.+++++++||+|++|+++|+||++||++.+.+....
T Consensus        64 -----~~~~~~~~~~~v~~im~~~~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd~~~~~iGiIt~~Dil~~l~~~~~~  135 (141)
T d3ddja1          64 -----KLDPDYFYGKVVKDVMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALHHILVM  135 (141)
T ss_dssp             -----HTCTHHHHTCBHHHHSBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHHHH
T ss_pred             -----ccccccccCCCHHHHhCcccccccccchhhHHHHHHHHcCCCEEEEEccCCEEEEEEEHHHHHHHHHHHHhh
Confidence                 000012346789999999999999999999999999999999999999899999999999999999876543

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.87  E-value=4.8e-22  Score=143.36  Aligned_cols=119  Identities=21%  Similarity=0.350  Sum_probs=106.3

Q ss_pred             ccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhh
Q 026712           74 TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKT  153 (234)
Q Consensus        74 ~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (234)
                      +|+++|++  ++.++++++|+.+|++.|.+++++.+||++ +|+++|+||.+||++.+....                  
T Consensus         1 kV~diM~~--~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~-~~~~~Gvit~~Di~~~l~~~~------------------   59 (120)
T d1pbja3           1 RVEDVMVT--DVDTIDITASLEDVLRNYVENAKGSSVVVK-EGVRVGIVTTWDVLEAIAEGD------------------   59 (120)
T ss_dssp             CHHHHCBC--SCCEEETTCBHHHHHHHHHHHCCCEEEEEE-TTEEEEEEEHHHHHHHHHHTC------------------
T ss_pred             ChHHhCCC--CCeEECCcCcHHHHHHHHHHcCceEEEEEe-CCcEEEEEEeeeccccccccc------------------
Confidence            47899998  899999999999999999999999999887 489999999999998643221                  


Q ss_pred             hHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHH
Q 026712          154 FNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAA  223 (234)
Q Consensus       154 ~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l  223 (234)
                               .....++.++|+++++++++++++.+|++.|.+++++++||++ +|+++|++|..|++++.
T Consensus        60 ---------~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~V~~-~~~l~Givt~~Dil~A~  119 (120)
T d1pbja3          60 ---------DLAEVKVWEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVEE-DDEIIGVISATDILRAK  119 (120)
T ss_dssp             ---------CTTTSBHHHHCBCGGGEECTTSCHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHH
T ss_pred             ---------cccceeEeeecccccccccchhHHHHHHHHHHHcCCeEEEEEE-CCEEEEEEEHHHHHhcC
Confidence                     1245789999999999999999999999999999999999987 68999999999999874

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.86  E-value=3.7e-21  Score=144.88  Aligned_cols=150  Identities=19%  Similarity=0.247  Sum_probs=118.0

Q ss_pred             cCccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcC--CCcEEEEEehHHHhhhhccCCCCCCCCCCCCCc
Q 026712           70 NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDD--DWKLVGVVSDYDLLALDSISGGNQNDTSLFPNV  147 (234)
Q Consensus        70 ~~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~--~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~  147 (234)
                      ...++|+++|.+  +++++++++++.+|+++|.+++++.+||+|+  ++.++|+++..|+.+.+............  ..
T Consensus         8 ~~~~~V~diM~~--~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~~~~~~lvg~is~~dl~~~l~~~~~~~~~~~~--~~   83 (160)
T d2d4za3           8 KYNIQVGDIMVR--DVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPF--EE   83 (160)
T ss_dssp             CSSCBTTSSSBS--SCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCC--CS
T ss_pred             ccceEHHHhcCC--CCeEECCCCcHHHHHHHHHhcCCCccccccccccccccccchHHHHHHHHhhccccccccch--hh
Confidence            447899999998  9999999999999999999999999999984  46899999999998765432211111110  11


Q ss_pred             cchhhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHH
Q 026712          148 NSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAAL  224 (234)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~  224 (234)
                      .....................+.++|.++++++.+++++.+++++|.+.+++++||++ +|+++|+||++||++++.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~~~l~~~~~~m~~~~v~~l~V~d-~g~lvGiIt~~Di~k~I~  159 (160)
T d2d4za3          84 MLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS-MGKLVGVVALAEIQAAIE  159 (160)
T ss_dssp             CCBHHHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred             ccccchhhhhhhhhcccccceeeecccCCCEEEcCCCCHHHHHHHHHHcCCeEEEEEE-CCEEEEEEEHHHHHHHhC
Confidence            1122222233333444556678899999999999999999999999999999999998 699999999999999864

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.86  E-value=6.2e-21  Score=138.56  Aligned_cols=111  Identities=29%  Similarity=0.474  Sum_probs=96.5

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCeeEEEcC--CCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHH
Q 026712           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDD--DWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLL  161 (234)
Q Consensus        84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~--~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (234)
                      +++++++++++.+|+++|.+++++.+||+|+  +++++|+||.+|+.+...                             
T Consensus         6 dpvtv~~~~tv~~a~~~m~~~~~~~~pVvD~~~~~~lvGivt~~Di~~~~~-----------------------------   56 (126)
T d1zfja4           6 DPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFISD-----------------------------   56 (126)
T ss_dssp             SCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCSC-----------------------------
T ss_pred             CceEECCCCCHHHHHHHHHHhCCCcEEEEeeccCCeEEEEeEHHHHHHhhc-----------------------------
Confidence            5789999999999999999999999999986  689999999999987521                             


Q ss_pred             hhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHH
Q 026712          162 SKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQ  225 (234)
Q Consensus       162 ~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~  225 (234)
                        ........+|..+++++.+++++.+|+++|.+++++++||||++|+++|+||+.||++.+..
T Consensus        57 --~~~~~~~~~~~~~~~~~~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGiiT~~Dil~~~~~  118 (126)
T d1zfja4          57 --YNAPISEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIEF  118 (126)
T ss_dssp             --SSSBTTTSCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred             --cCCceeeeeeccceeecCCCCCHHHHHHHHHhcCCcEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence              11223344557788999999999999999999999999999989999999999999998653

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.86  E-value=1.5e-21  Score=143.36  Aligned_cols=133  Identities=22%  Similarity=0.302  Sum_probs=111.6

Q ss_pred             cccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhh
Q 026712           73 YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWK  152 (234)
Q Consensus        73 ~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~  152 (234)
                      ++|+++|.+  ++.++++++++.+|++.|.+++++.+||+|+  +++|+++..|+.+.+........             
T Consensus         1 m~V~~lM~~--~~~~v~~~~tl~~a~~~m~~~~~~~l~V~d~--~lvg~~~~~~~~~~~~~~~~~~~-------------   63 (135)
T d3ddja2           1 MNIETLMIK--NPPILSKEDRLGSAFKKINEGGIGRIIVANE--KIEGLLTTRDLLSTVESYCKDSC-------------   63 (135)
T ss_dssp             SSGGGTCEE--SCCEECTTSBHHHHHHHTTGGGCCEEEEESS--SEEEEEEHHHHHGGGTTCC---C-------------
T ss_pred             CEeeEEeeC--CCeEECCCCcHHHHHHHHHHhCCeEEEEEec--ceeceeeccchhhhhccccccch-------------
Confidence            478999998  8999999999999999999999999999974  69999999999986432211100             


Q ss_pred             hhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHh
Q 026712          153 TFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQI  226 (234)
Q Consensus       153 ~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~  226 (234)
                          ...........+++++|+.+++++.+++++.+|++.|.+++++++||+|++|+++|+||.+|+++++.+.
T Consensus        64 ----~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiit~~Dil~~~~~l  133 (135)
T d3ddja2          64 ----SQGDLYHISTTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYKDL  133 (135)
T ss_dssp             ----CHHHHHHHHTSBGGGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHGGGGGGS
T ss_pred             ----hhhhccccccCCHHHHhCCccceEEeccccchhhhhhhhcceeEEEEEeCCCEEEEEEEHHHHHHHHHHh
Confidence                0111122345789999999999999999999999999999999999999999999999999999988765

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=99.85  E-value=1.1e-21  Score=145.85  Aligned_cols=140  Identities=23%  Similarity=0.358  Sum_probs=109.6

Q ss_pred             ccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhh
Q 026712           74 TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKT  153 (234)
Q Consensus        74 ~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (234)
                      .+.++|..  +++++.+++++.+|++.|.+++++.+||+|++|+++|+||..|+.+..............          
T Consensus         5 ~v~~~m~~--~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vGiis~~Dl~~~~~~~~~~~~~~~~----------   72 (145)
T d1o50a3           5 DVCKLISL--KPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHFFGFIPKEE----------   72 (145)
T ss_dssp             HHTTSSCC--CCEEECTTCBHHHHHHHHHHSTTCCEEEEEETTEEEEEEEHHHHHHHHHHHHHCCCC-------------
T ss_pred             EhHHhCCC--CCEEECCcCcHHHHHHHHHHcCCceEEEeccCcceeeeeccchhhhhhhcccccccchhH----------
Confidence            57788988  889999999999999999999999999999999999999999998764322111100000          


Q ss_pred             hHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHhhh
Q 026712          154 FNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIKR  228 (234)
Q Consensus       154 ~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~~~  228 (234)
                        ............++.++|. +++++.+++++.+|+++|.+++++++||||++|+++|+||.+||++++.+...
T Consensus        73 --~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~l~~a~~~m~~~~i~~lpVVd~~g~i~Gvit~~dil~~l~~~~~  144 (145)
T d1o50a3          73 --LIRSSMKRLIAKNASEIML-DPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALWKGRE  144 (145)
T ss_dssp             ------CCCCCSSCBHHHHCB-CCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHSCC
T ss_pred             --HHHhhhhhccccCHHHHcC-CCEEEcCCCCHHHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHHHhcCc
Confidence              0000001123345666664 47889999999999999999999999999989999999999999999988754

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.85  E-value=5.6e-21  Score=139.58  Aligned_cols=125  Identities=18%  Similarity=0.230  Sum_probs=106.4

Q ss_pred             cccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEE--cCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccch
Q 026712           73 YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVI--DDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNST  150 (234)
Q Consensus        73 ~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVv--d~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~  150 (234)
                      ++|+++|.+  +++++++++++.+|++.|.+++++++||+  |++++++|+++..|+.+......               
T Consensus         1 ~~V~dim~~--~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~~~~~iGi~~~~dl~~~~~~~~---------------   63 (131)
T d2riha1           1 IRTSELLKR--PPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRL---------------   63 (131)
T ss_dssp             CBGGGGCCS--CCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTC---------------
T ss_pred             CCHHHhccC--CCEEECCCCcHHHHHHHHHHhCCCcEEEEEEcCCCEEEEEEeeecccccccccc---------------
Confidence            479999998  89999999999999999999999999999  44588999999999987642211               


Q ss_pred             hhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHhhh
Q 026712          151 WKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIKR  228 (234)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~~~  228 (234)
                                    ........+..+++++.+++++.+++++|.+++++++||+|++|+++|+||..||++++....+
T Consensus        64 --------------~~~~~~~~~~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVvd~~g~l~Giit~~Dll~~~~~l~~  127 (131)
T d2riha1          64 --------------DLDGPAMPIANSPITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFERAILLE  127 (131)
T ss_dssp             --------------CTTSBSGGGCBCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSCHHHHHH
T ss_pred             --------------ccccccccccccceeEeeecchHHHHHHHHHCCeEEEEEEcCCCeEEEEEEHHHHHHHHHHHHh
Confidence                          1223334455678899999999999999999999999999999999999999999988776544

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.83  E-value=3.4e-20  Score=139.03  Aligned_cols=128  Identities=19%  Similarity=0.247  Sum_probs=104.8

Q ss_pred             cccccccc-CCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhh
Q 026712           74 TVGDFMTK-KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWK  152 (234)
Q Consensus        74 ~v~~im~~-~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~  152 (234)
                      ++++++.. .++++++.+++++.+|++.|.+++++++||+|++|+++|+++..|+.+.+......               
T Consensus         2 pl~~~~ig~~~~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~vG~it~~Dl~~~~~~~~~~---------------   66 (153)
T d2ooxe2           2 PLNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDYS---------------   66 (153)
T ss_dssp             BGGGTCCSBCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEECGGGBEEEEEEHHHHHHHHGGGCGG---------------
T ss_pred             CHHHcCCCCCCCCeEEeCcCcHHHHHHHHHHcCcceEeeecccceEEEEEEeeeeeehhcccccc---------------
Confidence            45666532 33789999999999999999999999999999999999999999998764322211               


Q ss_pred             hhHHHHHHHhhcCCCcccc------cccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHh
Q 026712          153 TFNELQRLLSKTNGKVVGD------LMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQI  226 (234)
Q Consensus       153 ~~~~~~~~~~~~~~~~v~~------im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~  226 (234)
                                 ....++.+      .+..+++++.+++++.++++.|.+++.+++||||++|+++|+||+.|+++++...
T Consensus        67 -----------~~~~~v~~~~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGivT~~Dil~~~~~~  135 (153)
T d2ooxe2          67 -----------NLDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYIIYD  135 (153)
T ss_dssp             -----------GGGSBHHHHHHTSCCCSSCCCEECTTCBHHHHHHHHHHSCCSEEEEECTTCBEEEEEEHHHHHHHHHSC
T ss_pred             -----------ccccchhhheeeeecccCCCeEECCCCcHHHHHHhhhhceeeEEEEEcCCCEEEEEEEHHHHHHHHHcC
Confidence                       11223333      3456778899999999999999999999999999999999999999999998754


Q ss_pred             h
Q 026712          227 K  227 (234)
Q Consensus       227 ~  227 (234)
                      .
T Consensus       136 ~  136 (153)
T d2ooxe2         136 K  136 (153)
T ss_dssp             T
T ss_pred             c
Confidence            3

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=2.1e-20  Score=138.04  Aligned_cols=125  Identities=22%  Similarity=0.319  Sum_probs=96.5

Q ss_pred             ccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHH
Q 026712           78 FMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNEL  157 (234)
Q Consensus        78 im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (234)
                      +|.+  ++.++.+++++.+|++.|.+++++.+||+|++|+++|+||..|+.+.+...........              .
T Consensus        14 ~~~~--~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vG~it~~Di~~~~~~~~~~~~~~~--------------~   77 (140)
T d2nyca1          14 ITQD--NMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLS--------------V   77 (140)
T ss_dssp             CBCS--SCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHTC----CCSB--------------H
T ss_pred             ccCC--CCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCeEcceehhhHHHHHHhhccccccccc--------------h
Confidence            3555  89999999999999999999999999999999999999999999987543222111000              0


Q ss_pred             HHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHH
Q 026712          158 QRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAAL  224 (234)
Q Consensus       158 ~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~  224 (234)
                      ...      ......+..+++++.+++++.++++.|.+++++++||||++|+++|+||.+|+++++.
T Consensus        78 ~~~------~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~VVd~~~~l~GiIt~~Dii~~l~  138 (140)
T d2nyca1          78 GEA------LMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYIL  138 (140)
T ss_dssp             HHH------HHHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             hhh------hhhhhhcccccEEECCCCcHHHHHHHHHhcCeeEEEEEeCCCeEEEEEEHHHHHHHHh
Confidence            000      0123344567889999999999999999999999999999999999999999999985

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.83  E-value=4.6e-20  Score=136.97  Aligned_cols=133  Identities=24%  Similarity=0.336  Sum_probs=105.7

Q ss_pred             cccccccc-CCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhh
Q 026712           74 TVGDFMTK-KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWK  152 (234)
Q Consensus        74 ~v~~im~~-~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~  152 (234)
                      ++++++.. .+++.++.+++++.+|++.|.+++++.+||+|++|+++|+||..|+.+.+...........          
T Consensus        10 ~l~~l~i~~~~~v~~v~~~~tv~eal~~m~~~~~~~lpVvd~~~~~~Gvit~~di~~~l~~~~~~~~~~~----------   79 (145)
T d2v8qe1          10 SLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVS----------   79 (145)
T ss_dssp             BHHHHTCSBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEGGGTGGGGGSSCCCCCSSB----------
T ss_pred             CHHHHcCCCCCCceEEcCcCcHHHHHHHHHHcCCCcccccccCCceEEEEEcchhhhhhhcccccchhhh----------
Confidence            45555331 1278999999999999999999999999999999999999999999876543221110000          


Q ss_pred             hhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHh
Q 026712          153 TFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQI  226 (234)
Q Consensus       153 ~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~  226 (234)
                          +      .........|..+++++.+++++.++++.|.+++++++||+|++|+++|+||.+||++++...
T Consensus        80 ----v------~~~~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~GiVt~~dii~~lv~~  143 (145)
T d2v8qe1          80 ----V------TKALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQALVLT  143 (145)
T ss_dssp             ----H------HHHGGGCCSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHSS
T ss_pred             ----h------hhccchhhhccCCCeEECCCCcHHHHHHHHHHcCceEEEEEccCCEEEEEEEHHHHHHHHHhc
Confidence                0      001234455677899999999999999999999999999999899999999999999998753

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.82  E-value=5.4e-20  Score=138.55  Aligned_cols=146  Identities=18%  Similarity=0.206  Sum_probs=110.5

Q ss_pred             CccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcC-CCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccc
Q 026712           71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDD-DWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNS  149 (234)
Q Consensus        71 ~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~-~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~  149 (234)
                      ...+++|+|....++++++.++++.+|++.|.+++++.+||+|+ +++++|+++..|+++............ .......
T Consensus        11 ~~~t~~Dlm~~~~~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~~~~~~vG~is~~Dl~~~~~~~~~~~~~~-~~~~~~~   89 (159)
T d2v8qe2          11 KSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQ-IYELEEH   89 (159)
T ss_dssp             HHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHTTT-CCCGGGC
T ss_pred             cCCEEEeECCCCCceEEEcCCCcHHHHHHHHHHcCCCceeEEECCCCcEEEEEEHHHHHHHHHhccccccch-hhhhhhh
Confidence            46689999965447899999999999999999999999999975 589999999999987632111000000 0000000


Q ss_pred             hhhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEc-CCCcEEEEEehHHHHHHHHHhhh
Q 026712          150 TWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVD-GYGKLVGLITRGNVVRAALQIKR  228 (234)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~-~~~~~vGiit~~dll~~l~~~~~  228 (234)
                      .           .........++|.++++++++++++.+|+++|.+++.+++||+| ++|+++|+||++||++++....+
T Consensus        90 ~-----------~~~~~~~~~~~~~~~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd~~~g~~~GivT~~dilk~l~~~~~  158 (159)
T d2v8qe2          90 K-----------IETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFIT  158 (159)
T ss_dssp             B-----------HHHHHHHHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHHHSC
T ss_pred             h-----------cccccceeeeeeccceEEECCCCcHHHHHHHHHHhCCeEEEEEECCCCeEEEEEeHHHHHHHHHHHcC
Confidence            0           00011235667888899999999999999999999999999998 46899999999999999987654

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=3.5e-19  Score=135.53  Aligned_cols=150  Identities=21%  Similarity=0.321  Sum_probs=109.8

Q ss_pred             ccccccccccCC--Cc--eeecCCCCHHHHHHHHHhCCCCeeEEE--cCCCcEEEEEehHHHhhhhccCCCCCCCC---C
Q 026712           72 TYTVGDFMTKKE--DL--HAVKTTTTVDEALERLVEKRITGFPVI--DDDWKLVGVVSDYDLLALDSISGGNQNDT---S  142 (234)
Q Consensus        72 ~~~v~~im~~~~--~~--~~v~~~~~v~~a~~~~~~~~~~~~pVv--d~~~~~~Givt~~dl~~~~~~~~~~~~~~---~  142 (234)
                      .+.++|+|.+..  ++  +.+.+++++++|.++|.+++++.+||+  +++++++|+||.+|+++.+..........   .
T Consensus         2 ~~~a~DiM~p~~~~~~~~v~~~~~~tv~~a~~ll~~~~~~~~PVV~~~~~~~lvG~is~~dl~~~l~~~~~~~~~~~~~~   81 (169)
T d2j9la1           2 KTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVSTS   81 (169)
T ss_dssp             CCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCCTTC
T ss_pred             ccchhhhcCcCCCCCceEEECCCcCCHHHHHHHHHHcCCCceeeeecCCCCeEEEEEEhHHHHHHHhcccccccccccch
Confidence            345788997632  12  335678899999999999999999999  45679999999999997754221111000   0


Q ss_pred             --CCCCccchhhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHH
Q 026712          143 --LFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVV  220 (234)
Q Consensus       143 --~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll  220 (234)
                        .+.......        ........+++++|.++++++.+++++.+++++|.+++.+++||++ +|+++|+||+.||+
T Consensus        82 ~~~~~~~~~~~--------~~~~~~~~~v~~im~~~~~tv~~~~~l~~v~~~~~~~~~~~l~V~d-~g~lvGiIt~~Dil  152 (169)
T d2j9la1          82 IIYFTEHSPPL--------PPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVL  152 (169)
T ss_dssp             EEECSSSCCCC--------CTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHH
T ss_pred             hhhhcccchhh--------hhccccccchhhhccCCCEEECCCCcHHHHHHHHHhcCceEEEEEE-CCEEEEEEEHHHHH
Confidence              000000000        0011234668999999999999999999999999999999999988 78999999999999


Q ss_pred             HHHHHhhhhC
Q 026712          221 RAALQIKRDG  230 (234)
Q Consensus       221 ~~l~~~~~~~  230 (234)
                      +++.+..++.
T Consensus       153 ~~l~~~~~~~  162 (169)
T d2j9la1         153 KHIAQMANQD  162 (169)
T ss_dssp             HHHHHHCC--
T ss_pred             HHHHHHhcCC
Confidence            9999876654

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.80  E-value=4.8e-20  Score=141.49  Aligned_cols=153  Identities=18%  Similarity=0.188  Sum_probs=112.2

Q ss_pred             CccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcC-CCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccc
Q 026712           71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDD-DWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNS  149 (234)
Q Consensus        71 ~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~-~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~  149 (234)
                      ...++.|+|.+..++++++++.++.+|++.|.+++++.+||+|+ +++++|++|..|+.+.+...........    ...
T Consensus        18 ~~~~~~dvm~~s~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~~~~~~vGiis~~Di~~~l~~~~~~~~~~~----~~~   93 (179)
T d2ooxe1          18 RSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSSFPE----AIA   93 (179)
T ss_dssp             HHSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHHCSCGG----GGG
T ss_pred             cCCEeeeeCCCCCcEEEEECcchHHHHHHHHHHcCCCeEEEEeCCCCeeEEEEeechHHHHHHhccccccchh----hhh
Confidence            35579999975447999999999999999999999999999985 5899999999999876432111000000    000


Q ss_pred             hhhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCC-----cEEEEEehHHHHHHHH
Q 026712          150 TWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYG-----KLVGLITRGNVVRAAL  224 (234)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~-----~~vGiit~~dll~~l~  224 (234)
                      .+..... ..   ..........|..+++++.+++++.+|++.|.+++++++||+|++|     +++|+||++||++++.
T Consensus        94 ~~~~~~~-~~---~~~~~~~~~~~~~~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~~g~~~~~~vvgiiT~~dIlk~l~  169 (179)
T d2ooxe1          94 EIDKFRL-LG---LREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFIS  169 (179)
T ss_dssp             GGGGSBH-HH---HHHHHHHTTCSCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHH
T ss_pred             hhhccch-hh---hcccceeeeecccCceEECCCCcHHHHHHHhhhcCceEEEEEecCCCcCCCcEEEEEeHHHHHHHHH
Confidence            0000000 00   0011234456788899999999999999999999999999998654     6999999999999998


Q ss_pred             HhhhhCC
Q 026712          225 QIKRDGE  231 (234)
Q Consensus       225 ~~~~~~~  231 (234)
                      .+.++..
T Consensus       170 ~~~~~~~  176 (179)
T d2ooxe1         170 MNCKETA  176 (179)
T ss_dssp             TTCGGGG
T ss_pred             HhhhHhh
Confidence            7766543

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.77  E-value=2.2e-20  Score=134.47  Aligned_cols=109  Identities=23%  Similarity=0.433  Sum_probs=59.2

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCeeEEEcC---CCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHH
Q 026712           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDD---DWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRL  160 (234)
Q Consensus        84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~---~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (234)
                      +++++.+++++.+|+++|.+++++.+||+|+   +++++|+||.+|+.....                            
T Consensus         5 ~pvtv~~~~tl~da~~~m~~~~i~~~pVvd~~~~~~~lvGivT~~Di~~~~~----------------------------   56 (120)
T d1jr1a4           5 DPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKE----------------------------   56 (120)
T ss_dssp             TTCC----CCCC--CCBC---------------CTTCCC-----------------------------------------
T ss_pred             CCEEECCcCCHHHHHHHHHHhCCCeEEEeeccccCCeEeeeeeeeeeeehhc----------------------------
Confidence            5689999999999999999999999999985   579999999999854310                            


Q ss_pred             HhhcCCCcccccc--cCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHH
Q 026712          161 LSKTNGKVVGDLM--TPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRA  222 (234)
Q Consensus       161 ~~~~~~~~v~~im--~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~  222 (234)
                        .....++..+|  .++++++.+++++.+|+++|.+++++++||+|++|+++|+||++||++.
T Consensus        57 --~~~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVVd~~~~lvGiiT~~Di~k~  118 (120)
T d1jr1a4          57 --EEHDRFLEEIMTKREDLVVAPAGITLKEANEILQRSKKGKLPIVNENDELVAIIARTDLKKN  118 (120)
T ss_dssp             -----------CCSBTTTSCCEETTCCHHHHHHHTCSCC---CEEEETTTEEEEEECHHHHHHH
T ss_pred             --cccCceeEEEEeeccCceEECCCCCHHHHHHHHHHcCccEEEEEcCCCEEEEEEEHHHhhhc
Confidence              11223444454  4568899999999999999999999999999999999999999999986

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.15  E-value=4.3e-11  Score=85.61  Aligned_cols=109  Identities=20%  Similarity=0.137  Sum_probs=76.8

Q ss_pred             CceecCCCccCCCcccc--Ccc-cccCcceeecccc--ccc--ccccccccccccCCCCcCccccccccccCCCceeecC
Q 026712           18 NGVINSVPHLQLPITVA--TPS-HLSKRLRFFTVSR--EVK--AFAHNGVGITNSVPPRNGTYTVGDFMTKKEDLHAVKT   90 (234)
Q Consensus        18 ~g~~~~~~~l~~~~~~~--~~~-~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~   90 (234)
                      ||++.+|.++.++.++.  ... ....+..++....  ...  +..+..++......   .......+|..  +++++++
T Consensus         1 ~gmi~dpvtv~~~~tv~~a~~~m~~~~~~~~pVvD~~~~~~lvGivt~~Di~~~~~~---~~~~~~~~~~~--~~~~~~~   75 (126)
T d1zfja4           1 NGVIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFISDY---NAPISEHMTSE--HLVTAAV   75 (126)
T ss_dssp             TTTSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCSCS---SSBTTTSCCCS--CCCCEET
T ss_pred             CCCEeCceEECCCCCHHHHHHHHHHhCCCcEEEEeeccCCeEEEEeEHHHHHHhhcc---CCceeeeeecc--ceeecCC
Confidence            79999999999999982  222 3344555555432  111  33333343322211   12223344555  7889999


Q ss_pred             CCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhh
Q 026712           91 TTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD  131 (234)
Q Consensus        91 ~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~  131 (234)
                      ++++.+|+++|.+++++.+||+|++|+++|+||..|++++.
T Consensus        76 ~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGiiT~~Dil~~~  116 (126)
T d1zfja4          76 GTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVI  116 (126)
T ss_dssp             TCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred             CCCHHHHHHHHHhcCCcEEEEEcCCCeEEEEEEHHHHHHHh
Confidence            99999999999999999999999999999999999999864

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.06  E-value=1.9e-10  Score=82.94  Aligned_cols=59  Identities=29%  Similarity=0.392  Sum_probs=55.4

Q ss_pred             CccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhh
Q 026712           71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD  131 (234)
Q Consensus        71 ~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~  131 (234)
                      ...+++++|.+  ++.++++++++.+|+++|.+++++.+||+|++|+++|+||.+|+++.+
T Consensus        72 ~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiit~~Dil~~~  130 (135)
T d3ddja2          72 STTPIIDYMTP--NPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLY  130 (135)
T ss_dssp             HTSBGGGTSEE--SCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHGGGG
T ss_pred             ccCCHHHHhCC--ccceEEeccccchhhhhhhhcceeEEEEEeCCCEEEEEEEHHHHHHHH
Confidence            46689999998  899999999999999999999999999999999999999999999864

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.03  E-value=1.7e-10  Score=81.82  Aligned_cols=110  Identities=18%  Similarity=0.137  Sum_probs=55.6

Q ss_pred             ceecCCCccCCCccccCc--c-cccCcceeecccc---ccc--ccccccccccccCCCCcCccccccccccCCCceeecC
Q 026712           19 GVINSVPHLQLPITVATP--S-HLSKRLRFFTVSR---EVK--AFAHNGVGITNSVPPRNGTYTVGDFMTKKEDLHAVKT   90 (234)
Q Consensus        19 g~~~~~~~l~~~~~~~~~--~-~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~   90 (234)
                      |++.+|.++.++.++...  . ....+.+++....   ...  +..+..++....  ......++.++|....+++++.+
T Consensus         1 gm~~~pvtv~~~~tl~da~~~m~~~~i~~~pVvd~~~~~~~lvGivT~~Di~~~~--~~~~~~~~~~~~~~~~~~~~v~~   78 (120)
T d1jr1a4           1 GFITDPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLK--EEEHDRFLEEIMTKREDLVVAPA   78 (120)
T ss_dssp             SEECTTCC----CCCC--CCBC---------------CTTCCC------------------------CCSBTTTSCCEET
T ss_pred             CcccCCEEECCcCCHHHHHHHHHHhCCCeEEEeeccccCCeEeeeeeeeeeeehh--ccccCceeEEEEeeccCceEECC
Confidence            788899999888888332  2 2233344444321   111  222222322111  12224456666654437899999


Q ss_pred             CCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhh
Q 026712           91 TTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLAL  130 (234)
Q Consensus        91 ~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~  130 (234)
                      ++++.+|.++|.+++++++||+|++|+++|+||..|+++.
T Consensus        79 ~~~~~~a~~~m~~~~i~~lpVVd~~~~lvGiiT~~Di~k~  118 (120)
T d1jr1a4          79 GITLKEANEILQRSKKGKLPIVNENDELVAIIARTDLKKN  118 (120)
T ss_dssp             TCCHHHHHHHTCSCC---CEEEETTTEEEEEECHHHHHHH
T ss_pred             CCCHHHHHHHHHHcCccEEEEEcCCCEEEEEEEHHHhhhc
Confidence            9999999999999999999999999999999999999874

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.01  E-value=1.7e-10  Score=82.53  Aligned_cols=58  Identities=17%  Similarity=0.338  Sum_probs=54.8

Q ss_pred             CccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhh
Q 026712           71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLAL  130 (234)
Q Consensus        71 ~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~  130 (234)
                      ...+++++|.+  ++.++.+++++.+|+++|.++++..+||+|++|+++|+||.+|+++.
T Consensus        63 ~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lPVVD~~g~lvGiIt~~Dil~~  120 (127)
T d2ouxa2          63 DDTLIADILNE--RVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDV  120 (127)
T ss_dssp             TTSBHHHHSBS--CCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHH
T ss_pred             ccEEhhhhccC--CCccCCCCCCHHHHHHHHHHhCCEEEEEEeCCCEEEEEEEHHHHHHH
Confidence            46789999998  89999999999999999999999999999999999999999999875

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.00  E-value=5.7e-10  Score=79.16  Aligned_cols=104  Identities=19%  Similarity=0.180  Sum_probs=65.4

Q ss_pred             ecCCCccCCCccccCc---ccccCcceeeccccccc--ccccccccccccCCCCcCccccccccccCCCceeecCCCCHH
Q 026712           21 INSVPHLQLPITVATP---SHLSKRLRFFTVSREVK--AFAHNGVGITNSVPPRNGTYTVGDFMTKKEDLHAVKTTTTVD   95 (234)
Q Consensus        21 ~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~   95 (234)
                      ..+|+++.++.++...   ........++.....+.  +.....++..     .....+++++|.+  +++++++++++.
T Consensus         8 ~~~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~G~it~~dl~~-----~~~~~~~~~~~~~--~~~~v~~~~~l~   80 (122)
T d2yzqa2           8 TQNPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRILV-----NPDEEQLAMLVKR--DVPVVKENDTLK   80 (122)
T ss_dssp             EESCCCEESSCC------------CCEEEEECTTCCEEEEEESSCC---------------CCCBS--CCCEEETTSBHH
T ss_pred             CCCCEEECCcCcHHHHHHHHHHcCCcEEEEEeccccchhhhhcchhhh-----hhcccchhhcccc--ceeecchhhHHH
Confidence            3457777777777222   22233344444433322  2222222221     2335579999998  899999999999


Q ss_pred             HHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhh
Q 026712           96 EALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD  131 (234)
Q Consensus        96 ~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~  131 (234)
                      +|+++|.+++++.+||+|++|+++|+||.+|+++++
T Consensus        81 ~~~~~~~~~~~~~lpVvd~~~~liGiit~~dil~~~  116 (122)
T d2yzqa2          81 KAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRY  116 (122)
T ss_dssp             HHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHT
T ss_pred             HHHHHHHHcCcEEEEEEeCCCEEEEEEEHHHHHHHH
Confidence            999999999999999999999999999999999763

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.99  E-value=4.5e-10  Score=80.80  Aligned_cols=61  Identities=26%  Similarity=0.431  Sum_probs=56.9

Q ss_pred             CCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHh
Q 026712          166 GKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQI  226 (234)
Q Consensus       166 ~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~  226 (234)
                      ..||+++|+++++++++++++.+|++.|.+++++.+||+|++|+++|+||..|+++.+...
T Consensus         4 ~~pV~~im~~~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~~   64 (132)
T d2yzia1           4 KAPIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVP   64 (132)
T ss_dssp             TSBGGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTT
T ss_pred             CCcHHHHcCCCCeEECCcCcHHHHHHHHHHcCCcEEEEecccceeeeeeeHHHHHHHHhhc
Confidence            3689999999999999999999999999999999999999999999999999999876643

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=98.98  E-value=2.4e-10  Score=81.73  Aligned_cols=107  Identities=16%  Similarity=0.149  Sum_probs=74.7

Q ss_pred             CCCccCCCccccC--cc-cccCcceeeccccccc-ccccccccccccCCCCcCccccccccccCCCceeecCCCCHHHHH
Q 026712           23 SVPHLQLPITVAT--PS-HLSKRLRFFTVSREVK-AFAHNGVGITNSVPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEAL   98 (234)
Q Consensus        23 ~~~~l~~~~~~~~--~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~a~   98 (234)
                      ++.++.++.++..  .. .......++....... +.....++.+..........+++++|.+  ++.++.+++++.+|.
T Consensus        13 ~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d~~~~~Givt~~dl~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~~~   90 (127)
T d2ef7a1          13 QVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVGIITERDIVKAIGKGKSLETKAEEFMTA--SLITIREDSPITGAL   90 (127)
T ss_dssp             SCCEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHHTTCCTTCBGGGTSEE--CCCCEETTSBHHHHH
T ss_pred             CCeEECCcCcHHHHHHHHHHcCCceEEeecccchhhhcchhHHHHHHHhhccccchhhhhhhh--hccccccccchhHHH
Confidence            3455666666622  11 2233444444333222 2233334443333334456789999998  899999999999999


Q ss_pred             HHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhh
Q 026712           99 ERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD  131 (234)
Q Consensus        99 ~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~  131 (234)
                      +.|.+++++++||+|++|+++|+||..|+++++
T Consensus        91 ~~m~~~~~~~l~Vvd~~~~lvGiit~~Dll~~i  123 (127)
T d2ef7a1          91 ALMRQFNIRHLPVVDDKGNLKGIISIRDITRAI  123 (127)
T ss_dssp             HHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHH
T ss_pred             HHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHH
Confidence            999999999999999999999999999999864

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=98.97  E-value=1.1e-09  Score=79.89  Aligned_cols=59  Identities=27%  Similarity=0.406  Sum_probs=55.2

Q ss_pred             CccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhh
Q 026712           71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD  131 (234)
Q Consensus        71 ~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~  131 (234)
                      ...++.++|.+  ++.++.+++++.+|++.|.++++..+||||++|+++|+||.+|+++++
T Consensus        63 ~~~~v~~im~~--~~~~v~~~~~~~~a~~~m~~~~~~~lPVVd~~g~lvGiIt~~Dil~~l  121 (144)
T d2yvxa2          63 PRTRVAEIMNP--KVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVL  121 (144)
T ss_dssp             TTCBSTTTSBS--SCCCEESSCCHHHHHHHHHHSCCSEEEEECSSCBEEEEEEHHHHHHHH
T ss_pred             cccchHHhccc--CCccCCCCChHHHHHHHHHHcCCCEEEEEeECCEEEEEEEHHHHHHHH
Confidence            45689999998  899999999999999999999999999999999999999999999763

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=98.97  E-value=5.5e-10  Score=81.03  Aligned_cols=60  Identities=28%  Similarity=0.463  Sum_probs=56.4

Q ss_pred             CcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHh
Q 026712          167 KVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQI  226 (234)
Q Consensus       167 ~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~  226 (234)
                      .+++++|+++++++.+++++.+|++.|.+++++++||+|++|+++|+||..|+++.+.+.
T Consensus         2 i~v~diM~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~~~~~~Giit~~dl~~~~~~~   61 (139)
T d2o16a3           2 IKVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESS   61 (139)
T ss_dssp             CBGGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHH
T ss_pred             EEHHHhCcCCCeEECCcCCHHHHHHHHHHcCCCeeeeecccccccccccHHHHHHHHHhh
Confidence            368999999999999999999999999999999999999999999999999999988764

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.95  E-value=2.3e-10  Score=81.32  Aligned_cols=60  Identities=25%  Similarity=0.380  Sum_probs=54.6

Q ss_pred             CcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHh
Q 026712          167 KVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQI  226 (234)
Q Consensus       167 ~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~  226 (234)
                      ++++++|+++++++.+++++.+|++.|.+++++.+||+|++|+++|++|..|+++.+...
T Consensus         1 tt~~diM~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~~~Giit~~Di~~~~~~~   60 (123)
T d1y5ha3           1 TTARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAA   60 (123)
T ss_dssp             CCHHHHSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGG
T ss_pred             CCHHHhcCCCCcEECCcCcHHHHHHHHHHcCCCceEEEeccchhhhhhhhhhHhhhhhhc
Confidence            357899999999999999999999999999999999999889999999999998765443

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=98.87  E-value=1.5e-09  Score=77.98  Aligned_cols=60  Identities=30%  Similarity=0.434  Sum_probs=55.0

Q ss_pred             Ccccccc--cCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHh
Q 026712          167 KVVGDLM--TPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQI  226 (234)
Q Consensus       167 ~~v~~im--~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~  226 (234)
                      .+|+++|  ..+++++.+++++.+|+++|.+++++++||+|++|+++|+++..|+++.+.+.
T Consensus         2 ~tv~~~mip~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~~~~~vGiit~~di~~~~~~~   63 (132)
T d1yava3           2 ATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGL   63 (132)
T ss_dssp             CBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBCS
T ss_pred             CCHHHccccccceEEEcCCCCHHHHHHHHHhhCCCceEEeecccccccEEEcchhHHHhhcc
Confidence            5688899  46789999999999999999999999999999889999999999999998654

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.86  E-value=2e-09  Score=79.26  Aligned_cols=60  Identities=28%  Similarity=0.459  Sum_probs=55.3

Q ss_pred             cCccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhh
Q 026712           70 NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD  131 (234)
Q Consensus        70 ~~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~  131 (234)
                      ....+++++|.+  ++.++.+++++.++++.|.+++++++||+|++|+++|+||.+|+++++
T Consensus        96 ~~~~~v~~~m~~--~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd~~g~lvGivt~~Dil~~l  155 (156)
T d2yzqa1          96 LPNKPVAEIMTR--DVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKVL  155 (156)
T ss_dssp             -CCCBGGGTCBS--SCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEEEEEEEHHHHGGGG
T ss_pred             ccCCEeehhccc--CceEECcccccHHHHHHHHHcCeeEEEEEeCCCEEEEEEEHHHHHHHh
Confidence            456789999998  899999999999999999999999999999999999999999999863

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.84  E-value=3.3e-09  Score=76.71  Aligned_cols=62  Identities=27%  Similarity=0.449  Sum_probs=57.3

Q ss_pred             CcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHhhh
Q 026712          167 KVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIKR  228 (234)
Q Consensus       167 ~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~~~  228 (234)
                      .||+++|+++++++++++++.+|++.|.+++++++||++++++++|+++..|+++.+.....
T Consensus         2 ~~V~~iMt~~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~~~~~~g~i~~~di~~~~~~~~~   63 (141)
T d3ddja1           2 FPVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVD   63 (141)
T ss_dssp             CBHHHHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHHH
T ss_pred             EeeHHhCcCCCeEEcCcCcHHHHHHHHHHcCCCeeecccccCccccccccccchhhhhcccc
Confidence            37899999999999999999999999999999999999999999999999999998875443

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=98.83  E-value=2.8e-09  Score=75.30  Aligned_cols=102  Identities=19%  Similarity=0.162  Sum_probs=72.4

Q ss_pred             CCCccCCCccc--cCcc-cccCcceeeccccccc--ccccccccccccCCCCcCccccccccccCCCceeecCCCCHHHH
Q 026712           23 SVPHLQLPITV--ATPS-HLSKRLRFFTVSREVK--AFAHNGVGITNSVPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEA   97 (234)
Q Consensus        23 ~~~~l~~~~~~--~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~a   97 (234)
                      +.+.+.+..++  .... .......++.......  +.....++..     .....++.++|..  ++.++++++++.++
T Consensus        10 ~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~~~~~~Gii~~~dl~~-----~~~~~~v~~~~~~--~~~~v~~~~~l~~~   82 (121)
T d1vr9a3          10 DFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLD-----LDLDSSVFNKVSL--PDFFVHEEDNITHA   82 (121)
T ss_dssp             CSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTT-----SCTTSBSGGGCBC--TTCCEETTSBHHHH
T ss_pred             CCeEECCCCCHHHHHHhhhhcCcEEEEEEeCCceeEEEeehhhhhh-----hhccccccccccC--ccEEECCCCCHHHH
Confidence            45666667766  2222 3333444444333222  2333333332     2235689999998  88999999999999


Q ss_pred             HHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhh
Q 026712           98 LERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD  131 (234)
Q Consensus        98 ~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~  131 (234)
                      ++.|.+.+...+||+|++|+++|+||..|+++++
T Consensus        83 ~~~~~~~~~~~lpVvde~g~~~Gvit~~dil~~l  116 (121)
T d1vr9a3          83 LLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEAL  116 (121)
T ss_dssp             HHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHH
T ss_pred             HHHHHhcCceeeeeECCCCeEEEEEEHHHHHHHH
Confidence            9999999999999999999999999999999864

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.83  E-value=3.5e-09  Score=76.95  Aligned_cols=59  Identities=25%  Similarity=0.334  Sum_probs=55.3

Q ss_pred             CcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHH
Q 026712          167 KVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQ  225 (234)
Q Consensus       167 ~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~  225 (234)
                      ..|+++|+++++++++++++.+|++.|.+++.+.+||+|++|+++|+||..|+++.+..
T Consensus         3 m~v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~~V~d~~~~~~Giit~~di~~~~~~   61 (142)
T d1pvma4           3 MRVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIP   61 (142)
T ss_dssp             CBGGGTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGG
T ss_pred             EEHHHhCCCCCcEECCcCcHHHHHHHHHHCCCceEeeeccCCcccceEEeechhhhhhh
Confidence            46899999999999999999999999999999999999988999999999999987653

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=98.83  E-value=4.9e-09  Score=76.17  Aligned_cols=60  Identities=28%  Similarity=0.305  Sum_probs=55.3

Q ss_pred             cccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHhh
Q 026712          168 VVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIK  227 (234)
Q Consensus       168 ~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~~  227 (234)
                      .+.++|+.+++++.+++++.+|++.|.+++++.+||+|++|+++|+||..|+++.+....
T Consensus         5 ~v~~~m~~~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vGiis~~Dl~~~~~~~~   64 (145)
T d1o50a3           5 DVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHF   64 (145)
T ss_dssp             HHTTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETTEEEEEEEHHHHHHHHHHHH
T ss_pred             EhHHhCCCCCEEECCcCcHHHHHHHHHHcCCceEEEeccCcceeeeeccchhhhhhhccc
Confidence            467889999999999999999999999999999999998899999999999999876543

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.82  E-value=4.1e-09  Score=74.31  Aligned_cols=59  Identities=27%  Similarity=0.276  Sum_probs=54.4

Q ss_pred             ccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHhhh
Q 026712          169 VGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIKR  228 (234)
Q Consensus       169 v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~~~  228 (234)
                      |+++|+++++++++++++.+|++.|.+++.+.+||++ +|+++|+||..||++.+.+...
T Consensus         2 V~diM~~~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~-~~~~~Gvit~~Di~~~l~~~~~   60 (120)
T d1pbja3           2 VEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVK-EGVRVGIVTTWDVLEAIAEGDD   60 (120)
T ss_dssp             HHHHCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEE-TTEEEEEEEHHHHHHHHHHTCC
T ss_pred             hHHhCCCCCeEECCcCcHHHHHHHHHHcCceEEEEEe-CCcEEEEEEeeecccccccccc
Confidence            6789999999999999999999999999999999998 5899999999999998876543

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=98.73  E-value=2.5e-08  Score=73.26  Aligned_cols=65  Identities=25%  Similarity=0.292  Sum_probs=58.7

Q ss_pred             CCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcC--CCcEEEEEehHHHHHHHHHhhhh
Q 026712          165 NGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDG--YGKLVGLITRGNVVRAALQIKRD  229 (234)
Q Consensus       165 ~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~--~~~~vGiit~~dll~~l~~~~~~  229 (234)
                      ...+|+++|+++++++++++++.+|++.|.+++.+.+||+|+  ++.++|+++..|+++.+......
T Consensus         9 ~~~~V~diM~~~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~~~~~~lvg~is~~dl~~~l~~~~~~   75 (160)
T d2d4za3           9 YNIQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISA   75 (160)
T ss_dssp             SSCBTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHT
T ss_pred             cceEHHHhcCCCCeEECCCCcHHHHHHHHHhcCCCccccccccccccccccchHHHHHHHHhhcccc
Confidence            457899999999999999999999999999999999999984  46899999999999998876543

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=98.73  E-value=1.2e-08  Score=72.64  Aligned_cols=58  Identities=28%  Similarity=0.413  Sum_probs=53.8

Q ss_pred             cCccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhh
Q 026712           70 NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLAL  130 (234)
Q Consensus        70 ~~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~  130 (234)
                      ....+++++|.+  ++.++.+++++.+|+++|.+.+++++||+| +|+++|+||..|++++
T Consensus        67 ~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~~GiIt~~Dil~~  124 (127)
T d2rc3a1          67 VKDTQVKEIMTR--QVAYVDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKD  124 (127)
T ss_dssp             GGGSBGGGTSBC--SCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHH
T ss_pred             ccceeEeeeccc--eeEEeccCccHHHHHHHHHHCCCcEEEEEE-CCEEEEEEEHHHHHHH
Confidence            456789999998  899999999999999999999999999998 5899999999999975

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.72  E-value=3.3e-08  Score=71.71  Aligned_cols=111  Identities=15%  Similarity=0.097  Sum_probs=73.0

Q ss_pred             eecCCCccCCCccc--cCc-ccccCcceeeccccccc--ccccccccccccCCCC--cC------ccccccccccCCCce
Q 026712           20 VINSVPHLQLPITV--ATP-SHLSKRLRFFTVSREVK--AFAHNGVGITNSVPPR--NG------TYTVGDFMTKKEDLH   86 (234)
Q Consensus        20 ~~~~~~~l~~~~~~--~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~------~~~v~~im~~~~~~~   86 (234)
                      -..+++++.++.++  +.. .........+.......  +.....++........  ..      ...+...|.+  ++.
T Consensus        18 ~~~~v~~v~~~~tv~eal~~m~~~~~~~lpVvd~~~~~~Gvit~~di~~~l~~~~~~~~~~~v~~~~~~~~~~~~--~~~   95 (145)
T d2v8qe1          18 TYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVSVTKALQHRSHYFE--GVL   95 (145)
T ss_dssp             BCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEGGGTGGGGGSSCCCCCSSBHHHHGGGCCSCCC--SCC
T ss_pred             CCCCceEEcCcCcHHHHHHHHHHcCCCcccccccCCceEEEEEcchhhhhhhcccccchhhhhhhccchhhhccC--CCe
Confidence            34566777777776  222 23334444444443322  3333334433222211  11      2234455666  788


Q ss_pred             eecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhc
Q 026712           87 AVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS  132 (234)
Q Consensus        87 ~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~  132 (234)
                      ++.+++++.+++++|.+++++.+||+|++|+++|+||..||++++.
T Consensus        96 ~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~GiVt~~dii~~lv  141 (145)
T d2v8qe1          96 KCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQALV  141 (145)
T ss_dssp             EECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             EECCCCcHHHHHHHHHHcCceEEEEEccCCEEEEEEEHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998754

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.69  E-value=2e-08  Score=72.50  Aligned_cols=57  Identities=14%  Similarity=0.167  Sum_probs=51.4

Q ss_pred             cccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHhhh
Q 026712          172 LMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIKR  228 (234)
Q Consensus       172 im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~~~  228 (234)
                      ++.++++++.+++++.+|++.|.+++++++||+|++|+++|+||..|+++.+.+...
T Consensus        14 ~~~~~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vG~it~~Di~~~~~~~~~   70 (140)
T d2nyca1          14 ITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIY   70 (140)
T ss_dssp             CBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHTC--
T ss_pred             ccCCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCeEcceehhhHHHHHHhhccc
Confidence            466889999999999999999999999999999999999999999999998876543

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.67  E-value=2e-08  Score=71.64  Aligned_cols=60  Identities=17%  Similarity=0.285  Sum_probs=54.8

Q ss_pred             cccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEE--cCCCcEEEEEehHHHHHHHHHhh
Q 026712          168 VVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVV--DGYGKLVGLITRGNVVRAALQIK  227 (234)
Q Consensus       168 ~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv--~~~~~~vGiit~~dll~~l~~~~  227 (234)
                      +|+++|+++++++++++++.+|++.|.+++.+++||+  |++++++|+++..|+.+.+.+..
T Consensus         2 ~V~dim~~~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~~~~~iGi~~~~dl~~~~~~~~   63 (131)
T d2riha1           2 RTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRL   63 (131)
T ss_dssp             BGGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTC
T ss_pred             CHHHhccCCCEEECCCCcHHHHHHHHHHhCCCcEEEEEEcCCCEEEEEEeeecccccccccc
Confidence            5889999999999999999999999999999999999  44588999999999999877654

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.57  E-value=5.3e-08  Score=71.31  Aligned_cols=59  Identities=15%  Similarity=0.244  Sum_probs=52.5

Q ss_pred             ccccccc---CCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHh
Q 026712          168 VVGDLMT---PAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQI  226 (234)
Q Consensus       168 ~v~~im~---~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~  226 (234)
                      |+++++.   ++++++.+++++.+|++.|.+++++++||+|++|+++|+|+..|+++.+.+.
T Consensus         2 pl~~~~ig~~~~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~vG~it~~Dl~~~~~~~   63 (153)
T d2ooxe2           2 PLNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDG   63 (153)
T ss_dssp             BGGGTCCSBCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEECGGGBEEEEEEHHHHHHHHGGG
T ss_pred             CHHHcCCCCCCCCeEEeCcCcHHHHHHHHHHcCcceEeeecccceEEEEEEeeeeeehhccc
Confidence            4556653   5799999999999999999999999999999889999999999999987654

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=9.8e-08  Score=70.98  Aligned_cols=60  Identities=13%  Similarity=0.206  Sum_probs=53.7

Q ss_pred             cCccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhc
Q 026712           70 NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS  132 (234)
Q Consensus        70 ~~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~  132 (234)
                      ....+++++|.+  ++.++.+++++.+++++|.+.+...+||+| +|+++|+||..|+++++.
T Consensus        97 ~~~~~v~~im~~--~~~tv~~~~~l~~v~~~~~~~~~~~l~V~d-~g~lvGiIt~~Dil~~l~  156 (169)
T d2j9la1          97 PPTLKLRNILDL--SPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKHIA  156 (169)
T ss_dssp             CCCEECGGGEES--SCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred             ccccchhhhccC--CCEEECCCCcHHHHHHHHHhcCceEEEEEE-CCEEEEEEEHHHHHHHHH
Confidence            346679999998  899999999999999999999999999887 689999999999998753

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.44  E-value=1.2e-07  Score=71.01  Aligned_cols=62  Identities=18%  Similarity=0.186  Sum_probs=54.7

Q ss_pred             CCccccccc--CCCeEecCCCCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEehHHHHHHHHHhh
Q 026712          166 GKVVGDLMT--PAPLVVHENTNLEDAARLLLETKYRRLPVVDG-YGKLVGLITRGNVVRAALQIK  227 (234)
Q Consensus       166 ~~~v~~im~--~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~-~~~~vGiit~~dll~~l~~~~  227 (234)
                      ...+.++|.  .++++++.+.++.+|+..|.+++++++||+|+ +++++|++|..|+++.+....
T Consensus        19 ~~~~~dvm~~s~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~~~~~~vGiis~~Di~~~l~~~~   83 (179)
T d2ooxe1          19 SRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYY   83 (179)
T ss_dssp             HSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHH
T ss_pred             CCEeeeeCCCCCcEEEEECcchHHHHHHHHHHcCCCeEEEEeCCCCeeEEEEeechHHHHHHhcc
Confidence            456889996  46899999999999999999999999999984 589999999999999887543

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.40  E-value=3e-07  Score=67.42  Aligned_cols=63  Identities=17%  Similarity=0.238  Sum_probs=54.8

Q ss_pred             CCccccccc--CCCeEecCCCCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEehHHHHHHHHHhhh
Q 026712          166 GKVVGDLMT--PAPLVVHENTNLEDAARLLLETKYRRLPVVDG-YGKLVGLITRGNVVRAALQIKR  228 (234)
Q Consensus       166 ~~~v~~im~--~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~-~~~~vGiit~~dll~~l~~~~~  228 (234)
                      ...+.|+|.  .++++++.++++.+|++.|.++++..+||+++ +++++|+++..|+++.+.+...
T Consensus        12 ~~t~~Dlm~~~~~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~~~~~~vG~is~~Dl~~~~~~~~~   77 (159)
T d2v8qe2          12 SHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYK   77 (159)
T ss_dssp             HSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHH
T ss_pred             CCEEEeECCCCCceEEEcCCCcHHHHHHHHHHcCCCceeEEECCCCcEEEEEEHHHHHHHHHhccc
Confidence            357889984  45788999999999999999999999999974 6889999999999998876543

>d1lkvx_ a.118.14.1 (X:) FliG {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: FliG
family: FliG
domain: FliG
species: Thermotoga maritima [TaxId: 2336]

Probab=86.44  E-value=0.0012  Score=49.87  Aligned_cols=114  Identities=11%  Similarity=-0.007  Sum_probs=79.0

Q ss_pred             ccccccccCCCceeecCCCCHHHHHHHHHhCCCCe-------e------EEEcCCCcEEEEEehHHHhhhhccCCCCCCC
Q 026712           74 TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITG-------F------PVIDDDWKLVGVVSDYDLLALDSISGGNQND  140 (234)
Q Consensus        74 ~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~-------~------pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~  140 (234)
                      ..+.+|..  .........++..+.+.+.......       +      ++.+..+++.|+.+..++...          
T Consensus        66 ~~~~~~~~--~~~~~~~~~~~~~v~~il~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~f~dl~~l~~~----------  133 (213)
T d1lkvx_          66 LEKKISGF--VSRTFSKVGGIDTAAEIMNNLDRTTEKKIMDKLVQENPELADEIRRRMFVFEDILKLDDR----------  133 (213)
T ss_dssp             HHHHHHHH--HHHHHSSCCCHHHHHHHHHTSCHHHHHHHHHHHHHHCHHHHHHHHHHHCCGGGGGGSCHH----------
T ss_pred             HHhccccc--cchhhhcchHHHHHHHHHHhcccccchhheeeeeecChhhhhhHhhhccccccHHHHccc----------
Confidence            34555655  4555666677777777776432110       1      112223455555555555432          


Q ss_pred             CCCCCCccchhhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHH
Q 026712          141 TSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVV  220 (234)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll  220 (234)
                                             .....+.+++...++++..+++...+...|...+....||++++++.+|.|+..|+.
T Consensus       134 -----------------------~~~~~l~~i~~~~~~~a~~~~~~e~~~~~l~~~~~~~~~vv~~e~~~~G~I~~~Die  190 (213)
T d1lkvx_         134 -----------------------SIQLVLREVDTRDLALALKGASDELKEKIFKNMSKRAAALLKDELEYMGPVRLKDVE  190 (213)
T ss_dssp             -----------------------HHHHHHTTSCHHHHHHHHTTCCHHHHHHHHTTSCHHHHHHHHHHHHSCCCCCHHHHH
T ss_pred             -----------------------cHhHHHHHhhhhhheeehhcCCHHHHHHHHHhCCHHHHHHHHHhhhhcCCCcHHHHH
Confidence                                   234567888888888899999999999999999999999999999999999999975


Q ss_pred             HH
Q 026712          221 RA  222 (234)
Q Consensus       221 ~~  222 (234)
                      ++
T Consensus       191 ~A  192 (213)
T d1lkvx_         191 EA  192 (213)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d1lkvx_ a.118.14.1 (X:) FliG {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: FliG
family: FliG
domain: FliG
species: Thermotoga maritima [TaxId: 2336]

Probab=83.95  E-value=0.0086  Score=44.78  Aligned_cols=57  Identities=12%  Similarity=0.113  Sum_probs=50.7

Q ss_pred             ccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhh
Q 026712           72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLAL  130 (234)
Q Consensus        72 ~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~  130 (234)
                      ...+.++|..  .+.++..+++-+++.++|...+...+||++++++.+|.|+.+|+..+
T Consensus       136 ~~~l~~i~~~--~~~~a~~~~~~e~~~~~l~~~~~~~~~vv~~e~~~~G~I~~~Die~A  192 (213)
T d1lkvx_         136 QLVLREVDTR--DLALALKGASDELKEKIFKNMSKRAAALLKDELEYMGPVRLKDVEEA  192 (213)
T ss_dssp             HHHHTTSCHH--HHHHHHTTCCHHHHHHHHTTSCHHHHHHHHHHHHSCCCCCHHHHHHH
T ss_pred             hHHHHHhhhh--hheeehhcCCHHHHHHHHHhCCHHHHHHHHHhhhhcCCCcHHHHHHH
Confidence            4457888887  78899999999999999999999999999999999999999998653