Citrus Sinensis ID: 026771

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230---
Protein Sequence
MKMALNCSSSTCITFSYNKIRNPTNTSSLTLNTGFFHLAQKSPFRVSAATSPAKARFVARRKESVRVRQLQRPLIEYMSLPASQYSVLDAERIERVDDNTFRCYVYRFKFFAFEICPVLLVRVEEQPNGCCIKLLSCKLEGSPIVVAQNDKFDASMINRISCDSNSSNSEVQQLTSDAFIEVSIEVPFAFRAFPVEAIESTGTQVLDQILKLMLPRFMSQVSRSICYSFIEVN
Secondary Structure (PSIPRED)
ccccccccccEEEEEEEEEEcccccccccccccccccccccccccccccccccEEEEEEEEEEEEEEEcccccHHHHHccccEEEEEccccccEEccccEEEEEEEcccEEEEEEEEEEEEEEEEccccEEEEEEcEEEccccccccccccccEEEEEEEEEccccccccEEEEEEEEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccEEEEcccccEEEEEccccccccccccEEEEEEEEEcccccccEEEEccccccEEEEEEEEEEEEcccccccHHHHHcccccEEEEEcHHHHcEcccccEEEEEEcEEEEEEEEEEEEEEEEEEccccEEEEEEEEEEcccHHHHHHHHHccEEEEEEEEEccccccccccEEEEEEEEEEEEEcccccccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHcc
Coil and Loop (DISEMBL)
mkmalncssstcitfsynkirnptntssltlntgffhlaqkspfrvsaatspAKARFVARRKESVRVRQLQRPlieymslpasqysvldaeriervddntfrcyvYRFKFFAFEICPVLLVRVeeqpngccikllscklegspivvaqndkfdasminriscdsnssnsevqQLTSDAFIEVSIevpfafrafpveaieSTGTQVLDQILKLMLPRFMSQVSRSICYSFIEVN
Flexible Loop (DISEMBL)
mkmalncssstCITFSYNKIRNPTNTSSLTLNTGFFHLAQKSPFRVSAATSPAKarfvarrkesvrvrqlqrplieymslpasqysvldaERIERVDDNTFRCYVYRFKFFAFEICPVLLVRVEEQPNGCCIKLLSCKLEGSPIVVAQNDKFDASMINRISCDSNSSNSEVQQLTSDAFIEVSIEVPFAFRAFPVEAIESTGTQVLDQILKLMLPRFMSQVSRSICYSFIEVN
Low Complexity Region (SEG)
MKMALNCSSSTCITFSYNKIRNPtntssltlntGFFHLAQKSPFRVSAATSPAKARFVARRKESVRVRQLQRPLIEYMSLPASQYSVLDAERIERVDDNTFRCYVYRFKFFAFEICPVLLVRVEEQPNGCCIKLLSCKLEGSPIVVAQNDKFDASMINRISCDSNSSNSEVQQLTSDAFIEVSIEVPFAFRAFPVEAIESTGTQVLDQILKLMLPRFMSQVSRSICYSFIEVN
Disordered region (IsUnstruct)
*********STCITFSYNKIRNPTNTSSLTLNTGFFHLAQKSPFR***********FV******VRVRQLQRPLIEYMSLPASQYSVLDAERIERVDDNTFRCYVYRFKFFAFEICPVLLVRVEEQPNGCCIKLLSCKLEGSPIVVAQNDKFDASMINRI*************LTSDAFIEVSIEVPFAFRAFPVEAIESTGTQVLDQILKLMLPRFMSQVSRSICYSFIE**
Disordered Region (DISOPRED)
*********STC*TF*****************************************FVARRKESVRVRQLQRPLIEYMSLPASQYSVLDAERIERVDDNTFRCYVYRFKFFAFEICPVLLVRVEEQPNGCCIKLLSCKLEGSPIVVAQNDKFDASMINRIS***********QLTSDAFIEVSIEVPFAFRAFPVEAIESTGTQVLDQILKLMLPRFMSQVSRSICYSFIEV*
Disordered Region (DISEMBL)
********SSTCITFSYNKIRNPTNTSSLTLNTGFFHLAQKSP************************RQLQRPLIEYMSLPASQYSVLDAERIERVDDNTFRCYVYRFKFFAFEICPVLLVRVEEQPNGCCIKLLSCKLEGSPIVVAQNDKFDASMINRISC**********QLTSDAFIEVSIEVPFAFRAFPVEAIESTGTQVLDQILKLMLPRFMSQVSRSICYSFIEVN
Disordered Region (DISPRO)
*KMALNCSSSTCITFSYNKIRNPTNTSSLTLNTGFFHLAQKSPFRVSAATSPAKARFVARRKESVRVRQLQRPLIEYMSLPASQYSVLDAERIERVDDNTFRCYVYRFKFFAFEICPVLLVRVEEQPNGCCIKLLSCKLEGSPIVVAQNDKFDASMINRISCDSNSSNSEVQQLTSDAFIEVSIEVPFAFRAFPVEAIESTGTQVLDQILKLMLPRFMSQVSRSICYSFIEV*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKMALNCSSSTCITFSYNKIRNPTNTSSLTLNTGFFHLAQKSPFRVSAATSPAKARFVARRKESVRVRQLQRPLIEYMSLPASQYSVLDAERIERVDDNTFRCYVYRFKFFAFEICPVLLVRVEEQPNGCCIKLLSCKLEGSPIVVAQNDKFDASMINRISCDSNSSNSEVQQLTSDAFIEVSIEVPFAFRAFPVEAIESTGTQVLDQILKLMLPRFMSQVSRSICYSFIEVN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	233
30680516	255	uncharacterized protein [Arabidopsis tha	0.772	0.705	0.823	5e-84
7406448	285	putative protein [Arabidopsis thaliana]	0.772	0.631	0.828	6e-84
255583732	245	conserved hypothetical protein [Ricinus	0.948	0.902	0.688	8e-83
297806421	252	hypothetical protein ARALYDRAFT_487226 [	0.944	0.873	0.678	9e-83
225448890	239	PREDICTED: uncharacterized protein SYNPC	0.866	0.845	0.719	5e-81
356500349	228	PREDICTED: uncharacterized protein LOC10	0.789	0.807	0.776	5e-78
388515479	226	unknown [Medicago truncatula]	0.845	0.871	0.726	1e-77
356534738	231	PREDICTED: uncharacterized protein LOC10	0.759	0.766	0.768	8e-76
357439939	227	(RAP Annotation release2) Galactose-bind	0.798	0.819	0.742	9e-76
449493277	242	PREDICTED: uncharacterized protein SYNPC	0.866	0.834	0.701	2e-75

>gi|30680516|ref|NP_196064.2| uncharacterized protein [Arabidopsis thaliana] gi|63147366|gb|AAY34156.1| At5g04440 [Arabidopsis thaliana] gi|87116598|gb|ABD19663.1| At5g04440 [Arabidopsis thaliana] gi|332003362|gb|AED90745.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  316 bits (809), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 149/181 (82%), Positives = 167/181 (92%), Gaps = 1/181 (0%)

Query: 43  PFRVSAATSPAKARFVARRKESVRVRQLQRPLIEYMSLPASQYSVLDAERIERVDDNTFR 102
           P RVS++++P KARF+AR+K+SV VRQLQRPLIEYMSLPASQYSVLDAERIERVDDNTFR
Sbjct: 56  PIRVSSSSTP-KARFIARQKQSVSVRQLQRPLIEYMSLPASQYSVLDAERIERVDDNTFR 114

Query: 103 CYVYRFKFFAFEICPVLLVRVEEQPNGCCIKLLSCKLEGSPIVVAQNDKFDASMINRISC 162
           CYVY FKFF FE+CPVLLVRVEEQPNGCCIKLLSCKLEGSP+VVAQNDKFDASM+NR+SC
Sbjct: 115 CYVYTFKFFNFEVCPVLLVRVEEQPNGCCIKLLSCKLEGSPVVVAQNDKFDASMVNRVSC 174

Query: 163 DSNSSNSEVQQLTSDAFIEVSIEVPFAFRAFPVEAIESTGTQVLDQILKLMLPRFMSQVS 222
           DS    S  QQ+TSDA IEV+IE+PFAFR FPV AIE+TGTQVLDQILKLMLPRF+SQ+S
Sbjct: 175 DSTQEGSSEQQITSDAVIEVNIEIPFAFRVFPVGAIEATGTQVLDQILKLMLPRFLSQLS 234

Query: 223 R 223
           +
Sbjct: 235 K 235

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7406448|emb|CAB85550.1| putative protein [Arabidopsis thaliana]

 Score =  316 bits (809), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 150/181 (82%), Positives = 166/181 (91%), Gaps = 1/181 (0%)

Query: 43  PFRVSAATSPAKARFVARRKESVRVRQLQRPLIEYMSLPASQYSVLDAERIERVDDNTFR 102
           P RVS++++P KARF+AR+K+SV VRQLQRPLIEYMSLPASQYSVLDAERIERVDDNTFR
Sbjct: 56  PIRVSSSSTP-KARFIARQKQSVSVRQLQRPLIEYMSLPASQYSVLDAERIERVDDNTFR 114

Query: 103 CYVYRFKFFAFEICPVLLVRVEEQPNGCCIKLLSCKLEGSPIVVAQNDKFDASMINRISC 162
           CYVY FKFF FE+CPVLLVRVEEQPNGCCIKLLSCKLEGSP+VVAQNDKFDASM+NR+SC
Sbjct: 115 CYVYTFKFFNFEVCPVLLVRVEEQPNGCCIKLLSCKLEGSPVVVAQNDKFDASMVNRVSC 174

Query: 163 DSNSSNSEVQQLTSDAFIEVSIEVPFAFRAFPVEAIESTGTQVLDQILKLMLPRFMSQVS 222
           DS    S  QQ+TSDA IEV+IE+PFAFR FPV AIE+TGTQVLDQILKLMLPRF+SQV 
Sbjct: 175 DSTQEGSSEQQITSDAVIEVNIEIPFAFRVFPVGAIEATGTQVLDQILKLMLPRFLSQVC 234

Query: 223 R 223
           R
Sbjct: 235 R 235

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255583732|ref|XP_002532619.1| conserved hypothetical protein [Ricinus communis] gi|223527639|gb|EEF29750.1| conserved hypothetical protein [Ricinus communis]

 Score =  312 bits (799), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 155/225 (68%), Positives = 185/225 (82%), Gaps = 4/225 (1%)

Query: 3   MALNCSSSTCITFSYNKIRNPTNTS---SLTLNTGFFHLAQKSPF-RVSAATSPAKARFV 58
           MA+NCS+ +  T S + +R  + +    SL  N+     + + PF R+ +A +  KARF+
Sbjct: 1   MAINCSTCSNSTVSLSSVRLESRSPRIFSLNFNSSQNGSSPRKPFLRIVSANATPKARFI 60

Query: 59  ARRKESVRVRQLQRPLIEYMSLPASQYSVLDAERIERVDDNTFRCYVYRFKFFAFEICPV 118
           ARRKESV VRQL RPLIEYMSLPASQYSVLDAERIER+DDNTFRCYVYRF FFAFE+CPV
Sbjct: 61  ARRKESVWVRQLGRPLIEYMSLPASQYSVLDAERIERIDDNTFRCYVYRFNFFAFEVCPV 120

Query: 119 LLVRVEEQPNGCCIKLLSCKLEGSPIVVAQNDKFDASMINRISCDSNSSNSEVQQLTSDA 178
           LLV+VEEQPNGCCIKLLSCKLEGSP+VVAQN+KFDASM+N ISCDS+ +NS  QQLTSDA
Sbjct: 121 LLVKVEEQPNGCCIKLLSCKLEGSPMVVAQNEKFDASMVNYISCDSSQNNSSEQQLTSDA 180

Query: 179 FIEVSIEVPFAFRAFPVEAIESTGTQVLDQILKLMLPRFMSQVSR 223
            IEVSI+VPFAF A PV+A+ESTG+++L+QIL LMLPRFM+Q  R
Sbjct: 181 VIEVSIDVPFAFSAIPVQALESTGSRILEQILALMLPRFMAQFRR 225

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297806421|ref|XP_002871094.1| hypothetical protein ARALYDRAFT_487226 [Arabidopsis lyrata subsp. lyrata] gi|297316931|gb|EFH47353.1| hypothetical protein ARALYDRAFT_487226 [Arabidopsis lyrata subsp. lyrata]

 Score =  312 bits (799), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 158/233 (67%), Positives = 191/233 (81%), Gaps = 13/233 (5%)

Query: 3   MALNCSSS--TCITFSYNKI----RNPTNTSSLTLNTGFFHLAQKS------PFRVSAAT 50
           MAL+ ++   T ++FS  K     RNP+ + +++ ++ F    + S      P RVS+++
Sbjct: 1   MALSSATLRLTSLSFSAKKTNRNPRNPSLSFTISSSSSFDEPPKPSLASSTPPIRVSSSS 60

Query: 51  SPAKARFVARRKESVRVRQLQRPLIEYMSLPASQYSVLDAERIERVDDNTFRCYVYRFKF 110
           +P KARF+AR+K+S+ VRQLQRPLIEYMSLPASQYSVLDAERI RVDDNTFRCYVY FKF
Sbjct: 61  TP-KARFIARQKQSISVRQLQRPLIEYMSLPASQYSVLDAERIVRVDDNTFRCYVYTFKF 119

Query: 111 FAFEICPVLLVRVEEQPNGCCIKLLSCKLEGSPIVVAQNDKFDASMINRISCDSNSSNSE 170
           F FE+CPVLLVRVEEQPNGCCIKLLSCKLEGSP+VVAQNDKFDASM+NR+SCDS    + 
Sbjct: 120 FNFEVCPVLLVRVEEQPNGCCIKLLSCKLEGSPVVVAQNDKFDASMVNRVSCDSTQEGTS 179

Query: 171 VQQLTSDAFIEVSIEVPFAFRAFPVEAIESTGTQVLDQILKLMLPRFMSQVSR 223
            QQ+TSDA IEV+IE+PFAFR FPV AIE+TGTQVLDQILKLMLPRF+SQ+S+
Sbjct: 180 EQQITSDAVIEVNIEIPFAFRVFPVGAIEATGTQVLDQILKLMLPRFLSQLSK 232

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448890|ref|XP_002270872.1| PREDICTED: uncharacterized protein SYNPCC7002_A1590 [Vitis vinifera] gi|296085939|emb|CBI31380.3| unnamed protein product [Vitis vinifera]

 Score =  306 bits (784), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 146/203 (71%), Positives = 177/203 (87%), Gaps = 1/203 (0%)

Query: 21  RNPTNTSSLTLNTGFFHLAQKSPFRVSAATSPAKARFVARRKESVRVRQLQRPLIEYMSL 80
           +NP ++ ++      ++ + K  FR+SA  +P KARFVARR+ESV V+QL+RPL+EYMSL
Sbjct: 18  QNPRSSLNVKHILFSYNESSKPSFRISADLAP-KARFVARRRESVSVKQLERPLVEYMSL 76

Query: 81  PASQYSVLDAERIERVDDNTFRCYVYRFKFFAFEICPVLLVRVEEQPNGCCIKLLSCKLE 140
           PASQYSVLDAERIERVDDNTFRCYVYRF+FFAFE+CPVL+V+VEEQPNGCCI+LLSCKLE
Sbjct: 77  PASQYSVLDAERIERVDDNTFRCYVYRFRFFAFEVCPVLMVKVEEQPNGCCIRLLSCKLE 136

Query: 141 GSPIVVAQNDKFDASMINRISCDSNSSNSEVQQLTSDAFIEVSIEVPFAFRAFPVEAIES 200
           GSP+VVAQN+KF ASM+N+ISCDSN SNS VQQLTSD  IEV I++PF FRA PVEAIES
Sbjct: 137 GSPVVVAQNEKFHASMVNKISCDSNQSNSLVQQLTSDTVIEVIIDIPFPFRAIPVEAIES 196

Query: 201 TGTQVLDQILKLMLPRFMSQVSR 223
           TG QVL+QIL++MLPRFM+Q+ +
Sbjct: 197 TGAQVLEQILRIMLPRFMAQLVK 219

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500349|ref|XP_003518995.1| PREDICTED: uncharacterized protein LOC100789119 [Glycine max]

 Score =  296 bits (758), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 146/188 (77%), Positives = 166/188 (88%), Gaps = 4/188 (2%)

Query: 39  AQKSPFRVS---AATSPAKARFVARRKESVRVRQLQRPLIEYMSLPASQYSVLDAERIER 95
           A KSP R+S   +AT   KARFVARRKESV VRQLQRPLIEYM LPASQYSVLDAERIER
Sbjct: 22  ALKSP-RLSLRASATPSQKARFVARRKESVSVRQLQRPLIEYMRLPASQYSVLDAERIER 80

Query: 96  VDDNTFRCYVYRFKFFAFEICPVLLVRVEEQPNGCCIKLLSCKLEGSPIVVAQNDKFDAS 155
           V++NTFRCYVYRFKFF FE+CPVLLV+VEEQP+GCCIKLLSCKLEGSP+V AQNDKFDA 
Sbjct: 81  VNENTFRCYVYRFKFFNFEVCPVLLVKVEEQPDGCCIKLLSCKLEGSPMVAAQNDKFDAL 140

Query: 156 MINRISCDSNSSNSEVQQLTSDAFIEVSIEVPFAFRAFPVEAIESTGTQVLDQILKLMLP 215
           M+NRISCDSN++ S +QQLTSD  IEVSIE+PF F+A P +AIES GTQVL+QIL++MLP
Sbjct: 141 MVNRISCDSNANRSLMQQLTSDTIIEVSIEIPFPFQAIPKQAIESAGTQVLEQILRIMLP 200

Query: 216 RFMSQVSR 223
           RFMSQ+ +
Sbjct: 201 RFMSQLEK 208

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388515479|gb|AFK45801.1| unknown [Medicago truncatula]

 Score =  295 bits (755), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 146/201 (72%), Positives = 170/201 (84%), Gaps = 4/201 (1%)

Query: 26  TSSLTLNTGFFH-LAQKSPFRVSAATSPA--KARFVARRKESVRVRQLQRPLIEYMSLPA 82
           +S L L T   H L Q+ P  +++AT P+  KARFVARRKESV V+QLQRPLIEYM LPA
Sbjct: 7   SSILVLPTSRCHQLKQRLPL-LASATPPSTHKARFVARRKESVSVQQLQRPLIEYMRLPA 65

Query: 83  SQYSVLDAERIERVDDNTFRCYVYRFKFFAFEICPVLLVRVEEQPNGCCIKLLSCKLEGS 142
           SQYSVLDAERIERV ++TFRCYVY  KFF FE+CPVLLV+VE+QPNGCCIKLLSCKL+GS
Sbjct: 66  SQYSVLDAERIERVSEDTFRCYVYTIKFFTFEVCPVLLVKVEQQPNGCCIKLLSCKLQGS 125

Query: 143 PIVVAQNDKFDASMINRISCDSNSSNSEVQQLTSDAFIEVSIEVPFAFRAFPVEAIESTG 202
           P+V AQNDKFDA M+NRISC+S+S  S VQQLTSD  IEVSIE+PFAF+A P +AIES G
Sbjct: 126 PMVAAQNDKFDAIMVNRISCESDSDKSLVQQLTSDTIIEVSIEIPFAFKAIPKQAIESAG 185

Query: 203 TQVLDQILKLMLPRFMSQVSR 223
           TQVL+QILK+MLPRFMSQ+ +
Sbjct: 186 TQVLEQILKIMLPRFMSQLVK 206

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356534738|ref|XP_003535909.1| PREDICTED: uncharacterized protein LOC100797206 [Glycine max]

 Score =  289 bits (739), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 136/177 (76%), Positives = 158/177 (89%)

Query: 47  SAATSPAKARFVARRKESVRVRQLQRPLIEYMSLPASQYSVLDAERIERVDDNTFRCYVY 106
           ++AT   KARFVARRKES+ VRQLQRPLIEYM LPASQYSVLDAERIERV++NTFRCYVY
Sbjct: 35  ASATPSQKARFVARRKESLSVRQLQRPLIEYMRLPASQYSVLDAERIERVNENTFRCYVY 94

Query: 107 RFKFFAFEICPVLLVRVEEQPNGCCIKLLSCKLEGSPIVVAQNDKFDASMINRISCDSNS 166
           RFKFF  E+CPVLLV+VEEQP+GCCIKLLSCKLEGS +V AQNDKFDA M+NRISCDSN+
Sbjct: 95  RFKFFNLEVCPVLLVKVEEQPDGCCIKLLSCKLEGSAMVAAQNDKFDALMVNRISCDSNA 154

Query: 167 SNSEVQQLTSDAFIEVSIEVPFAFRAFPVEAIESTGTQVLDQILKLMLPRFMSQVSR 223
           + S +QQLTSD  IEVSIE+PF F+A P +AIES GTQVL+QIL++MLPRF+SQ+ +
Sbjct: 155 NKSLMQQLTSDTIIEVSIEIPFPFQAIPKQAIESAGTQVLEQILRIMLPRFVSQLEK 211

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357439939|ref|XP_003590247.1| (RAP Annotation release2) Galactose-binding like domain containing protein [Medicago truncatula] gi|355479295|gb|AES60498.1| (RAP Annotation release2) Galactose-binding like domain containing protein [Medicago truncatula]

 Score =  288 bits (738), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 141/190 (74%), Positives = 164/190 (86%), Gaps = 4/190 (2%)

Query: 37  HLAQKSPFRVSAATSPA--KARFVARRKESVRVRQLQRPLIEYMSLPASQYSVLDAERIE 94
            L Q+ P  +++AT P+  KARFVARRKESV V+QLQRPLIEYM LPASQYSVLDAERIE
Sbjct: 19  QLKQRLPL-LASATPPSTHKARFVARRKESVSVQQLQRPLIEYMRLPASQYSVLDAERIE 77

Query: 95  RVDDNTFRCYVYRFKFFAFEICPVLLVRVEEQPNGCCIKLLSCKLEGSPIVVAQNDKFDA 154
           RV ++TFRCYVY  KFF FE+CPVLLV+VE+QPNGCCIKLLSCKL+GSP+V AQNDKFDA
Sbjct: 78  RVSEDTFRCYVYTIKFFTFEVCPVLLVKVEQQPNGCCIKLLSCKLQGSPMVAAQNDKFDA 137

Query: 155 SMINRISCDSNSSNSEVQQLTSDAFIE-VSIEVPFAFRAFPVEAIESTGTQVLDQILKLM 213
            M+NRISC+S+S  S VQQLTSD  IE VSIE+PFAF+A P +AIES GTQVL+QILK+M
Sbjct: 138 IMVNRISCESDSDKSLVQQLTSDTIIEVVSIEIPFAFKAIPKQAIESAGTQVLEQILKIM 197

Query: 214 LPRFMSQVSR 223
           LPRFMSQ+ +
Sbjct: 198 LPRFMSQLVK 207

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449493277|ref|XP_004159242.1| PREDICTED: uncharacterized protein SYNPCC7002_A1590-like [Cucumis sativus]

 Score =  287 bits (735), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 146/208 (70%), Positives = 167/208 (80%), Gaps = 6/208 (2%)

Query: 21  RNPTNTSSLTLNTGFFHLAQKS-----PFRVSAATSPAKARFVARRKESVRVRQLQRPLI 75
           +NP    SLT +  F  LA  +     P    +  S  KARF+ARR ESV VRQL RPL 
Sbjct: 16  KNPKTPFSLT-HKPFLILASSANDSTRPSLPISTNSNPKARFIARRSESVTVRQLARPLN 74

Query: 76  EYMSLPASQYSVLDAERIERVDDNTFRCYVYRFKFFAFEICPVLLVRVEEQPNGCCIKLL 135
           EYMSLPASQYSVLDAERIER+DD TFRC+VYRFKFFAFE+CPVL+V+VE QPNGCCIKLL
Sbjct: 75  EYMSLPASQYSVLDAERIERIDDCTFRCHVYRFKFFAFEVCPVLVVKVELQPNGCCIKLL 134

Query: 136 SCKLEGSPIVVAQNDKFDASMINRISCDSNSSNSEVQQLTSDAFIEVSIEVPFAFRAFPV 195
           SCKLEGSPIVVAQNDKFDASM+N+IS D N  NS +Q+LTSD  IEV+IE+PFAFRA PV
Sbjct: 135 SCKLEGSPIVVAQNDKFDASMVNQISYDVNRGNSLLQKLTSDTVIEVNIEIPFAFRAIPV 194

Query: 196 EAIESTGTQVLDQILKLMLPRFMSQVSR 223
           +AIES GTQVL+QILKLMLPRF +Q+ +
Sbjct: 195 QAIESAGTQVLEQILKLMLPRFTAQLVK 222

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	233
TAIR|locus:2184377	255	AT5G04440 "AT5G04440" [Arabido	0.776	0.709	0.824	3.8e-78
TAIR|locus:1005716370	274	AT4G31115 [Arabidopsis thalian	0.746	0.635	0.290	7.5e-18

TAIR|locus:2184377 AT5G04440 "AT5G04440" [Arabidopsis thaliana (taxid:3702)]

 Score = 786 (281.7 bits), Expect = 3.8e-78, P = 3.8e-78
 Identities = 150/182 (82%), Positives = 168/182 (92%)

Query:    42 SPFRVSAATSPAKARFVARRKESVRVRQLQRPLIEYMSLPASQYSVLDAERIERVDDNTF 101
             SP RVS++++P KARF+AR+K+SV VRQLQRPLIEYMSLPASQYSVLDAERIERVDDNTF
Sbjct:    55 SPIRVSSSSTP-KARFIARQKQSVSVRQLQRPLIEYMSLPASQYSVLDAERIERVDDNTF 113

Query:   102 RCYVYRFKFFAFEICPVLLVRVEEQPNGCCIKLLSCKLEGSPIVVAQNDKFDASMINRIS 161
             RCYVY FKFF FE+CPVLLVRVEEQPNGCCIKLLSCKLEGSP+VVAQNDKFDASM+NR+S
Sbjct:   114 RCYVYTFKFFNFEVCPVLLVRVEEQPNGCCIKLLSCKLEGSPVVVAQNDKFDASMVNRVS 173

Query:   162 CDSNSSNSEVQQLTSDAFIEVSIEVPFAFRAFPVEAIESTGTQVLDQILKLMLPRFMSQV 221
             CDS    S  QQ+TSDA IEV+IE+PFAFR FPV AIE+TGTQVLDQILKLMLPRF+SQ+
Sbjct:   174 CDSTQEGSSEQQITSDAVIEVNIEIPFAFRVFPVGAIEATGTQVLDQILKLMLPRFLSQL 233

Query:   222 SR 223
             S+
Sbjct:   234 SK 235

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:1005716370 AT4G31115 [Arabidopsis thaliana (taxid:3702)]

 Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
 Identities = 54/186 (29%), Positives = 102/186 (54%)

Query:    45 RVSAATSPAKARFVARRKESVRVR---QLQRPLIEYMSLPASQYSVLDAERIER---VDD 98
             R    +S  KA   A RK+ +++    + +    E++  P+   +V++A+ ++    VDD
Sbjct:    72 RAMVISSLKKANISASRKQRIKLEINGEKELTFSEFLKHPSGMEAVINAKALQSYHLVDD 131

Query:    99 N--TFRCYVYRFKFFAFEICPVLLVRVEEQPNGCCIKLLSCKLEGSPIVVAQNDKFDASM 156
             +  T+RC + + +  +FE+ PVL++RV      C ++LLSCKLEGS ++  Q+++F A M
Sbjct:   132 SDDTYRCTLPKVQLMSFEVYPVLVLRVTPTQEDCTVELLSCKLEGSELLENQSERFSAIM 191

Query:   157 INRISCDSNSSNSEVQQLTSDAFIEVSIEVPFA-FRAFPVEAIESTGTQVLDQILKLMLP 215
              N ++   N  + E   L  D  + V++E+    F   PV A+E+ G  V+  ++  ++P
Sbjct:   192 TNCMTW--NMEHPE-PFLEVDVRLNVTLEISTRPFTMLPVSAVEAPGNLVMQTLVDTLVP 248

Query:   216 RFMSQV 221
               + Q+
Sbjct:   249 LLLQQL 254


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.135   0.391    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      233       223   0.00098  112 3  11 22  0.44    32
                                                     32  0.40    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  574 (61 KB)
  Total size of DFA:  156 KB (2094 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.17u 0.09s 18.26t   Elapsed:  00:00:01
  Total cpu time:  18.17u 0.09s 18.26t   Elapsed:  00:00:01
  Start:  Sat May 11 05:16:25 2013   End:  Sat May 11 05:16:26 2013

GO:0005634 "nucleus" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	AT5G04440	unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT4G31115.2); Has 213 Blast hits to 213 proteins in 56 species- Archae - 0; Bacteria - 98; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 73 (source- NCBI BLink). (255 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	PSB28	PSB28 (PHOTOSYSTEM II REACTION CENTER PSB28 PROTEIN); Similar to PsbW subunit of photosystem II [...] (183 aa)			•	•					0.563
	ATAB2	ATAB2; RNA binding; Encodes a chloroplast-localized protein ATAB2. ATAB2 is involved in the bio [...] (374 aa)			•	•					0.548
	AT1G68590	plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative; plastid-specific 30S rib [...] (166 aa)			•	•					0.546
	AT3G17930	unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (190 aa)			•	•					0.545
	AT5G52970	thylakoid lumen 15.0 kDa protein; thylakoid lumen 15.0 kDa protein; FUNCTIONS IN- molecular_fun [...] (223 aa)			•	•					0.544
	PPL1	PPL1 (PsbP-like protein 1); calcium ion binding; PsbP-like protein 1 (PPL1); FUNCTIONS IN- calc [...] (230 aa)			•	•					0.544
	APE1	APE1 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT); mutant has Altered acclimation responses; (286 aa)			•	•					0.540
	AT1G03600	photosystem II family protein; photosystem II family protein; FUNCTIONS IN- molecular_function [...] (174 aa)			•						0.525
	PSBO2	PSBO2 (PHOTOSYSTEM II SUBUNIT O-2); oxygen evolving/ poly(U) binding; Encodes a protein which i [...] (331 aa)			•	•					0.524
	TIC21	TIC21 (TRANSLOCON AT INNER MEMBRANE OF CHLOROPLASTS 21); copper uptake transmembrane transporte [...] (296 aa)			•						0.518

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	233
pfam09366	170	pfam09366, DUF1997, Protein of unknown function (D	3e-53

>gnl|CDD|117908 pfam09366, DUF1997, Protein of unknown function (DUF1997)

 Score =  168 bits (429), Expect = 3e-53
 Identities = 56/166 (33%), Positives = 86/166 (51%), Gaps = 7/166 (4%)

Query: 57  FVARRKESVRVRQLQRPLIEYMSLPASQYSVL-DAERIERVDDNTFRCYVYRFKFFAFEI 115
           F A +   + +     PL EY+  P   +S L D  ++ER+ D  +R  V  F FF FE+
Sbjct: 1   FSASQSLDLPLPAPAEPLAEYLRQPQRVFSALLDPMKVERLGDGRYRLTVRPFGFFGFEV 60

Query: 116 CPVLLVRVEEQPNGCCIKLLSCKLEGSPIVVAQNDKFDASMINRISCDSNSSNSEVQQLT 175
            PV+++RVE + +G  I+LL C+LEG P+V   ND FD  +   +  D     +    L 
Sbjct: 61  EPVVVLRVEPEDDGLTIELLDCELEGLPLV---NDDFDLDLRASLYPD---REATETGLE 114

Query: 176 SDAFIEVSIEVPFAFRAFPVEAIESTGTQVLDQILKLMLPRFMSQV 221
            DA + V++ +P   R  P   +ESTG  +L  IL+ +  R   Q+
Sbjct: 115 GDADLSVTVSLPPPLRLLPEPVLESTGESLLQGILRQIKRRLTRQL 160

This family of proteins are functionally uncharacterized. Length = 170

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	233
PF09366	158	DUF1997: Protein of unknown function (DUF1997); In	100.0
PF06240	140	COXG: Carbon monoxide dehydrogenase subunit G (Cox	98.08
cd07823	146	SRPBCC_5 Ligand-binding SRPBCC domain of an unchar	97.71
cd05018	144	CoxG Carbon monoxide dehydrogenase subunit G (CoxG	96.92
COG3427	146	Carbon monoxide dehydrogenase subunit G, CoxG [Ene	96.19
cd08861	142	OtcD1_ARO-CYC_like N-terminal and C-terminal aroma	90.8
cd08866	144	SRPBCC_11 Ligand-binding SRPBCC domain of an uncha	88.49

>PF09366 DUF1997: Protein of unknown function (DUF1997); InterPro: IPR018971 This family of proteins are functionally uncharacterised

Probab=100.00  E-value=1.2e-44  Score=301.10  Aligned_cols=154  Identities=39%  Similarity=0.618  Sum_probs=148.4

Q ss_pred             CccHHHhhcCCce-eeeeCCccceeEecCCeEEEEeecccEEeEEEeEEEEEEEEEcCCceEEEEeeeeeeCCcchhccc
Q 026771           71 QRPLIEYMSLPAS-QYSVLDAERIERVDDNTFRCYVYRFKFFAFEICPVLLVRVEEQPNGCCIKLLSCKLEGSPIVVAQN  149 (233)
Q Consensus        71 ~~~l~~YL~~P~~-~~allDp~~ie~Lgd~~fRl~v~~l~ff~~eV~P~V~lrV~~~~~g~~i~s~~~~l~G~~~v~~~n  149 (233)
                      +.+|++||++|++ +++|+||+++|+||||+|||+|+|++||+|+|+|+|+|+|+++++||.|++.+|+|+|+++++. |
T Consensus         1 ~~~l~~YL~~~~r~~~~~~d~~~ie~l~~~~yr~~~~~~~~~~~~v~P~v~l~v~~~~~~~~i~~~~~~l~G~~~~~~-~   79 (158)
T PF09366_consen    1 QAPLAEYLSDPQRWFSALFDPMRIEPLGDNTYRLKMRPFQFFGFEVEPVVDLRVWPQDDGLTIRSLDCELRGSPLVEQ-N   79 (158)
T ss_pred             CCchHHHHhCchhHHHHhcCHHHcEEcCCCeEEEEEcCccEEEEEEEEEEEEEEEEcCCCeEEEEEEEEEeCCCcccc-C
Confidence            3589999999999 9999999999999999999999999999999999999999999999999999999999999887 9


Q ss_pred             cccceeeeEEEEecCCCCCCCcceEEEEEEEEEEEEcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 026771          150 DKFDASMINRISCDSNSSNSEVQQLTSDAFIEVSIEVPFAFRAFPVEAIESTGTQVLDQILKLMLPRFMSQVSRSICYS  228 (233)
Q Consensus       150 ~~F~l~l~~~L~~~~~~~~~~~t~l~g~~~L~V~v~lP~~~~llP~~lle~tG~~vL~~Il~~i~~rf~~qL~~Dy~~~  228 (233)
                      ++|+++++|.|+|.+   .++.++|+|+++|+|++++|++|+++|++++|+|||++|++|+++|++||++||++||+.-
T Consensus        80 ~~f~l~~~~~l~~~~---~~~~t~l~~~~~l~V~v~~P~~~~~~P~~~l~~~G~~vl~~il~~i~~r~~~~l~~Dy~~w  155 (158)
T PF09366_consen   80 DGFSLDLQASLYPEE---PPGRTRLEGDADLSVSVELPPPFRLLPESLLESTGNAVLQQILRQIKPRFLQQLQADYHRW  155 (158)
T ss_pred             CcEEEEEEEEEEEec---CCCceEEEEEEEEEEEEEcChhHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999954   5688999999999999999999999999999999999999999999999999999999864

>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster

Probab=98.08  E-value=0.00016  Score=58.40  Aligned_cols=136  Identities=17%  Similarity=0.187  Sum_probs=86.9

Q ss_pred             EEEeccCCccHHHhhcCCceeeeeC-CccceeEecCCeEEEEee-cccEEeEEEeEEEEEEEEEcCCceEEEEeeeeeeC
Q 026771           64 SVRVRQLQRPLIEYMSLPASQYSVL-DAERIERVDDNTFRCYVY-RFKFFAFEICPVLLVRVEEQPNGCCIKLLSCKLEG  141 (233)
Q Consensus        64 ~v~v~e~~~~l~~YL~~P~~~~all-Dp~~ie~Lgd~~fRl~v~-~l~ff~~eV~P~V~lrV~~~~~g~~i~s~~~~l~G  141 (233)
                      +..|+.+.+.+-++|.+|+.+.+|+ .-+.+|.++ +.|+.++. +++++..++.=.+.+.=...++...     +++.|
T Consensus         2 s~~v~a~~~~vw~~l~D~~~l~~ciPG~~~~e~~~-~~~~~~~~v~vG~i~~~~~g~~~~~~~~~~~~~~-----~~~~g   75 (140)
T PF06240_consen    2 SFEVPAPPEKVWAFLSDPENLARCIPGVESIEKVG-DEYKGKVKVKVGPIKGTFDGEVRITEIDPPESYT-----LEFEG   75 (140)
T ss_dssp             EEEECS-HHHHHHHHT-HHHHHHHSTTEEEEEEEC-TEEEEEEEEESCCCEEEEEEEEEEEEEETTTEEE-----EEEEE
T ss_pred             cEEecCCHHHHHHHhcCHHHHHhhCCCcEEeeecC-cEEEEEEEEEeccEEEEEEEEEEEEEcCCCcceE-----eeeec
Confidence            4567777889999999999987787 457899999 99999887 7888777775555555444444433     33333


Q ss_pred             CcchhccccccceeeeEEEEecCCCCCCCcceEEEEEEEEEEEEcCccccccchHHHHHHHHHHHHHHHHHHHHHH
Q 026771          142 SPIVVAQNDKFDASMINRISCDSNSSNSEVQQLTSDAFIEVSIEVPFAFRAFPVEAIESTGTQVLDQILKLMLPRF  217 (233)
Q Consensus       142 ~~~v~~~n~~F~l~l~~~L~~~~~~~~~~~t~l~g~~~L~V~v~lP~~~~llP~~lle~tG~~vL~~Il~~i~~rf  217 (233)
                      .+.-    ..+.+...-.+...+   .++ |.+.|++++++    .+++..+..++++.+.+.+++++...+..++
T Consensus        76 ~g~~----~~~~~~~~~~~~~~~---~~~-T~v~~~~~~~~----~G~la~~g~~~i~~~~~~l~~~f~~~l~~~l  139 (140)
T PF06240_consen   76 RGRG----GGSSASANITLSLED---DGG-TRVTWSADVEV----GGPLASLGQRLIESVARRLIEQFFENLERKL  139 (140)
T ss_dssp             EECT----CCEEEEEEEEEEECC---CTC-EEEEEEEEEEE----ECHHHHC-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCc----cceEEEEEEEEEcCC---CCC-cEEEEEEEEEE----ccCHHHhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3321    123333333334321   233 99999997775    4667777777777777777777776665543

The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.

>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=97.71  E-value=0.0021  Score=51.56  Aligned_cols=140  Identities=15%  Similarity=0.094  Sum_probs=85.0

Q ss_pred             EEEEeccCCccHHHhhcCCceeeeeCC-ccceeEecCCeEEEEeecccEEeEEEeEEEEEEEEEcC-CceEEEEeeeeee
Q 026771           63 ESVRVRQLQRPLIEYMSLPASQYSVLD-AERIERVDDNTFRCYVYRFKFFAFEICPVLLVRVEEQP-NGCCIKLLSCKLE  140 (233)
Q Consensus        63 ~~v~v~e~~~~l~~YL~~P~~~~allD-p~~ie~Lgd~~fRl~v~~l~ff~~eV~P~V~lrV~~~~-~g~~i~s~~~~l~  140 (233)
                      .++.++.+++.+=++|.+|+.+-+|+. -+.++.+++++|+.++ ++++.++...=...+++...+ .+-.+...   ..
T Consensus         3 ~~~~v~a~pe~vw~~l~D~~~~~~~~pg~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~   78 (146)
T cd07823           3 NEFTVPAPPDRVWALLLDIERVAPCLPGASLTEVEGDDEYKGTV-KVKLGPISASFKGTARLLEDDEAARRAVLE---AT   78 (146)
T ss_pred             ceEEecCCHHHHHHHhcCHHHHHhcCCCceeccccCCCeEEEEE-EEEEccEEEEEEEEEEEEeccCCCcEEEEE---EE
Confidence            356677788999999999999878875 4667888889997776 344433333223344555443 33333322   23


Q ss_pred             CCcchhccccccceeeeEEEEecCCCCCCCcceEEEEEEEEEEEEcCccccccchHHHHHHHHHHHHHHHHHHHHHH
Q 026771          141 GSPIVVAQNDKFDASMINRISCDSNSSNSEVQQLTSDAFIEVSIEVPFAFRAFPVEAIESTGTQVLDQILKLMLPRF  217 (233)
Q Consensus       141 G~~~v~~~n~~F~l~l~~~L~~~~~~~~~~~t~l~g~~~L~V~v~lP~~~~llP~~lle~tG~~vL~~Il~~i~~rf  217 (233)
                      |.+.  .-.......++-.|.+     .++.|.+.++++++++.-    +..+...++++..+.++++.++.++.|+
T Consensus        79 g~~~--~~~g~~~~~~~~~l~~-----~~~gT~v~~~~~~~~~g~----l~~l~~~~v~~~~~~~~~~~~~~l~~~~  144 (146)
T cd07823          79 GKDA--RGQGTAEATVTLRLSP-----AGGGTRVTVDTDLALTGK----LAQFGRGGIGDVAGRLLAQFAANLEARL  144 (146)
T ss_pred             EecC--CCcceEEEEEEEEEEe-----cCCcEEEEEEEEEEEeeE----hHHhChhHHHHHHHHHHHHHHHHHHHHh
Confidence            3210  0001112333333444     225688999888865544    4556677888888888888887777664

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG)

Probab=96.92  E-value=0.051  Score=42.22  Aligned_cols=136  Identities=13%  Similarity=0.111  Sum_probs=80.9

Q ss_pred             EEEEeccCCccHHHhhcCCceeeeeC-CccceeEecCCeEEEEee-cccEEeEEEeEEEEEEEEEcCCceEEEEeeeeee
Q 026771           63 ESVRVRQLQRPLIEYMSLPASQYSVL-DAERIERVDDNTFRCYVY-RFKFFAFEICPVLLVRVEEQPNGCCIKLLSCKLE  140 (233)
Q Consensus        63 ~~v~v~e~~~~l~~YL~~P~~~~all-Dp~~ie~Lgd~~fRl~v~-~l~ff~~eV~P~V~lrV~~~~~g~~i~s~~~~l~  140 (233)
                      .++.++.+++.+-++|.|++....++ ....++.++++.|...+. .++.++-+..  ...++...+.+..+.   ....
T Consensus         5 ~~~~i~a~~e~v~~~l~D~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---~~~~   79 (144)
T cd05018           5 GEFRIPAPPEEVWAALNDPEVLARCIPGCESLEKIGPNEYEATVKLKVGPVKGTFK--GKVELSDLDPPESYT---ITGE   79 (144)
T ss_pred             eEEEecCCHHHHHHHhcCHHHHHhhccchhhccccCCCeEEEEEEEEEccEEEEEE--EEEEEEecCCCcEEE---EEEE
Confidence            44556666788999999999865555 556688888888877653 1222222221  233443333322221   1222


Q ss_pred             CCcchhcccccc-ceeeeEEEEecCCCCCCCcceEEEEEEEEEEEEcCccccccchHHHHHHHHHHHHHHHHHHHHHH
Q 026771          141 GSPIVVAQNDKF-DASMINRISCDSNSSNSEVQQLTSDAFIEVSIEVPFAFRAFPVEAIESTGTQVLDQILKLMLPRF  217 (233)
Q Consensus       141 G~~~v~~~n~~F-~l~l~~~L~~~~~~~~~~~t~l~g~~~L~V~v~lP~~~~llP~~lle~tG~~vL~~Il~~i~~rf  217 (233)
                      |.+.     ..+ .....=.+.+.     ++.|.|++.++++    +++++..+|..++......++++.++.|+.++
T Consensus        80 ~~~~-----~~~~~~~~~~~l~~~-----~~gT~v~~~~~~~----~~g~l~~l~~~~~~~~~~~~~~~~~~~l~~~~  143 (144)
T cd05018          80 GKGG-----AGFVKGTARVTLEPD-----GGGTRLTYTADAQ----VGGKLAQLGSRLIDGAARKLINQFFENLASKI  143 (144)
T ss_pred             EcCC-----CceEEEEEEEEEEec-----CCcEEEEEEEEEE----EccChhhhCHHHHHHHHHHHHHHHHHHHHHhh
Confidence            2211     111 22222234442     2457777777666    45677888999999999999999998888765

CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]

Probab=96.19  E-value=0.21  Score=41.58  Aligned_cols=134  Identities=16%  Similarity=0.166  Sum_probs=79.3

Q ss_pred             EEeccCCccHHHhhcCCceeeeeCCc-cceeEecCCeEEEEee-cccEEeEEEeEEEEEEEEE-cCCceEEEEeeeeeeC
Q 026771           65 VRVRQLQRPLIEYMSLPASQYSVLDA-ERIERVDDNTFRCYVY-RFKFFAFEICPVLLVRVEE-QPNGCCIKLLSCKLEG  141 (233)
Q Consensus        65 v~v~e~~~~l~~YL~~P~~~~allDp-~~ie~Lgd~~fRl~v~-~l~ff~~eV~P~V~lrV~~-~~~g~~i~s~~~~l~G  141 (233)
                      -.|.-+++.+-++|.+|+.+.+|+.- +.+|..|| +|.+++. +++.+.  -+=...++... .++.     ...++.|
T Consensus         7 f~V~~p~e~Vw~~L~dpe~~a~ciPG~qs~e~~g~-e~~~~v~l~ig~l~--~~~~g~~~~~~v~~~~-----~~~~i~g   78 (146)
T COG3427           7 FRVAAPPEAVWEFLNDPEQVAACIPGVQSVETNGD-EYTAKVKLKIGPLK--GTFSGRVRFVNVDEPP-----RSITING   78 (146)
T ss_pred             EEecCCHHHHHHHhcCHHHHHhhcCCcceeeecCC-eEEEEEEEeeccee--EEEEEEEEEccccCCC-----cEEEEEe
Confidence            34455577899999999998888865 66888888 8887764 222222  22222222222 1111     1244555


Q ss_pred             CcchhccccccceeeeEEEEecCCCCCCCcceEEEEEEEEEEEEcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026771          142 SPIVVAQNDKFDASMINRISCDSNSSNSEVQQLTSDAFIEVSIEVPFAFRAFPVEAIESTGTQVLDQILKLMLPRFMSQV  221 (233)
Q Consensus       142 ~~~v~~~n~~F~l~l~~~L~~~~~~~~~~~t~l~g~~~L~V~v~lP~~~~llP~~lle~tG~~vL~~Il~~i~~rf~~qL  221 (233)
                      .+.-  .-.-+..+..-.+.++     +.+|.|.|.++.++..            ++...|..+|+.+++.+..||-+.|
T Consensus        79 ~G~~--~~g~~~~~~~v~l~~~-----g~gt~v~w~~~~~~gg------------~laqlGsr~i~~~~~kli~~~~~~l  139 (146)
T COG3427          79 SGGG--AAGFADGTVDVQLEPS-----GEGTRVNWFADANVGG------------KLAQLGSRLIDSVARKLINRFFDCL  139 (146)
T ss_pred             eccc--ccceeeeeeEEEEEEc-----CCCcEEEEEEEccccH------------HHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            5410  1111123333335552     2449999999998753            5677788888888887777777666


Q ss_pred             HHHh
Q 026771          222 SRSI  225 (233)
Q Consensus       222 ~~Dy  225 (233)
                      .+-.
T Consensus       140 ~~~l  143 (146)
T COG3427         140 SSEL  143 (146)
T ss_pred             HHHH
Confidence            5543

>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains

Probab=90.80  E-value=3.8  Score=31.83  Aligned_cols=132  Identities=14%  Similarity=-0.011  Sum_probs=66.4

Q ss_pred             EEEeccCCccHHHhhcCCceeeeeCCc-cceeEec--CCeEEEEeecccEEeEEEeEEEEEEEEEcCCceEEEEeeeeee
Q 026771           64 SVRVRQLQRPLIEYMSLPASQYSVLDA-ERIERVD--DNTFRCYVYRFKFFAFEICPVLLVRVEEQPNGCCIKLLSCKLE  140 (233)
Q Consensus        64 ~v~v~e~~~~l~~YL~~P~~~~allDp-~~ie~Lg--d~~fRl~v~~l~ff~~eV~P~V~lrV~~~~~g~~i~s~~~~l~  140 (233)
                      ++.+..+...+=+|++|.++.-. +.| ..++.++  ++.-++.+-+.++-+....-+...  ..++++-+|........
T Consensus         4 s~~i~ap~~~V~~~l~D~~~~p~-~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~i~~~~~~~~   80 (142)
T cd08861           4 SVTVAAPAEDVYDLLADAERWPE-FLPTVHVERLELDGGVERLRMWATAFDGSVHTWTSRR--VLDPEGRRIVFRQEEPP   80 (142)
T ss_pred             EEEEcCCHHHHHHHHHhHHhhhc-cCCCceEEEEEEcCCEEEEEEEEEcCCCcEEEEEEEE--EEcCCCCEEEEEEeeCC
Confidence            45666678889999999998544 444 3455443  343334433333333322222111  12222222322211111


Q ss_pred             CCcchhccccccceeeeE--EEEecCCCCCCCcceEEEEEEEEEEEEcCccccccchHHHHHHHHHHHHHHHHHHHHHH
Q 026771          141 GSPIVVAQNDKFDASMIN--RISCDSNSSNSEVQQLTSDAFIEVSIEVPFAFRAFPVEAIESTGTQVLDQILKLMLPRF  217 (233)
Q Consensus       141 G~~~v~~~n~~F~l~l~~--~L~~~~~~~~~~~t~l~g~~~L~V~v~lP~~~~llP~~lle~tG~~vL~~Il~~i~~rf  217 (233)
                      |         +| ..+.|  .+.+.    +.+.|.++++.+.+.    +.++ .++..+++..-+..++..|+.++.+.
T Consensus        81 ~---------~~-~~~~g~w~~~~~----~~~~t~Vt~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~l~~lk~~~  140 (142)
T cd08861          81 P---------PV-ASMSGEWRFEPL----GGGGTRVTLRHDFTL----GIDS-PEAVPWIRRALDRNSRAELAALRAAA  140 (142)
T ss_pred             C---------Ch-hhheeEEEEEEC----CCCcEEEEEEEEEEE----CCCC-chhHHHHHHHHccccHHHHHHHHHHh
Confidence            1         11 11222  23441    123466666655553    3322 27788888888888888888888764

This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this

>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=88.49  E-value=10  Score=29.46  Aligned_cols=134  Identities=15%  Similarity=0.104  Sum_probs=67.6

Q ss_pred             EEEEeccCCccHHHhhcCCceeeee----CCccceeEecCCeEEE-EeecccEEeEEEeEEEEEEEEEcCC-ceEEEEee
Q 026771           63 ESVRVRQLQRPLIEYMSLPASQYSV----LDAERIERVDDNTFRC-YVYRFKFFAFEICPVLLVRVEEQPN-GCCIKLLS  136 (233)
Q Consensus        63 ~~v~v~e~~~~l~~YL~~P~~~~al----lDp~~ie~Lgd~~fRl-~v~~l~ff~~eV~P~V~lrV~~~~~-g~~i~s~~  136 (233)
                      .++.++.+++.+=++|.|.++....    -.-..++.-+ +..+. ...+..++.+.+.=.+.+++...++ .-.++.. 
T Consensus         3 ~~~~i~a~~~~Vw~~l~D~~~~~~w~p~v~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~-   80 (144)
T cd08866           3 ARVRVPAPPETVWAVLTDYDNLAEFIPNLAESRLLERNG-NRVVLEQTGKQGILFFKFEARVVLELREREEFPRELDFE-   80 (144)
T ss_pred             EEEEECCCHHHHHHHHhChhhHHhhCcCceEEEEEEcCC-CEEEEEEeeeEEEEeeeeeEEEEEEEEEecCCCceEEEE-
Confidence            4566777777788888888763322    2222233323 33333 2244555543333344444443332 1122221 


Q ss_pred             eeeeCCcchhccccccceeeeEEEEecCCCCCCCcceEEEEEEEEEEEEcCccccccchHHHHHHHHHHHHHHHHHHHHH
Q 026771          137 CKLEGSPIVVAQNDKFDASMINRISCDSNSSNSEVQQLTSDAFIEVSIEVPFAFRAFPVEAIESTGTQVLDQILKLMLPR  216 (233)
Q Consensus       137 ~~l~G~~~v~~~n~~F~l~l~~~L~~~~~~~~~~~t~l~g~~~L~V~v~lP~~~~llP~~lle~tG~~vL~~Il~~i~~r  216 (233)
                       ...|. .     ..|.....  +.+..   +++.|.++++++++-.       ..+|..++.......+..++.+|+.+
T Consensus        81 -~~~g~-~-----~~~~g~w~--~~~~~---~~~~t~v~~~~~~~~~-------~~~p~~l~~~~~~~~~~~~l~~lr~~  141 (144)
T cd08866          81 -MVEGD-F-----KRFEGSWR--LEPLA---DGGGTLLTYEVEVKPD-------FFAPVFLVEFVLRQDLPTNLLAIRAE  141 (144)
T ss_pred             -EcCCc-h-----hceEEEEE--EEECC---CCCeEEEEEEEEEEeC-------CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence             11231 1     12222222  44421   1245777777666522       25677788888888888888887766


Q ss_pred             H
Q 026771          217 F  217 (233)
Q Consensus       217 f  217 (233)
                      .
T Consensus       142 a  142 (144)
T cd08866         142 A  142 (144)
T ss_pred             H
Confidence            4

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	233
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 3e-07
 Identities = 43/257 (16%), Positives = 80/257 (31%), Gaps = 76/257 (29%)

Query: 3   MALN-CSSSTCITFSYNKI-----RNPTNTSSLT--LNTGFFHLAQKSPFRVSAATSPAK 54
           +AL+ C S         KI     +N  +  ++   L    + +      R   +++   
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK- 224

Query: 55  ARFVARRKESVRVRQLQRPLIEYMSLPASQYSVLDAERIERV-DDNTFRCYVYRFKFFAF 113
                 R  S++   L+R L++          VL       V +   +          AF
Sbjct: 225 -----LRIHSIQAE-LRR-LLKSKPYENC-LLVLL-----NVQNAKAWN---------AF 262

Query: 114 EI-CPVLL------------------VRVEEQPNG--------CCIKLLSCKLEGSPIVV 146
            + C +LL                  + ++               +K L C+ +  P  V
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV 322

Query: 147 AQNDKFDASMINRISCDSNSSNSEVQQLTSDAF---IEVSIEV--PFAFRA-------FP 194
              +    S+I     D  ++    + +  D     IE S+ V  P  +R        FP
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382

Query: 195 VEA-IESTGTQVLDQIL 210
             A I    T +L  ++
Sbjct: 383 PSAHIP---TILL-SLI 395

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	233
3p9v_A	161	Uncharacterized protein; structural genomics, PSI-	96.1
2ns9_A	157	Hypothetical protein APE2225; uncharacterized cons	95.89
2pcs_A	162	Conserved protein; structural genomics, unknown fu	95.88

>3p9v_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.78A {Marinobacter aquaeolei}

Probab=96.10  E-value=0.11  Score=41.20  Aligned_cols=148  Identities=8%  Similarity=0.146  Sum_probs=81.2

Q ss_pred             eeEEEEEEEEEEeccCCccHHHhhcCCceeeeeCCc-cceeEecCCeEEEEeecccEEeEEEeEEEEEEEEEcCCceEEE
Q 026771           55 ARFVARRKESVRVRQLQRPLIEYMSLPASQYSVLDA-ERIERVDDNTFRCYVYRFKFFAFEICPVLLVRVEEQPNGCCIK  133 (233)
Q Consensus        55 ~~F~As~~~~v~v~e~~~~l~~YL~~P~~~~allDp-~~ie~Lgd~~fRl~v~~l~ff~~eV~P~V~lrV~~~~~g~~i~  133 (233)
                      +++..+++..  |+.+++.+=+++.|.++.-++... .-.+..++|.|+..+..+++-+..+.=....++..++++.+|.
T Consensus         5 ~~i~v~~s~~--I~ap~e~v~~lv~Dve~w~~~yp~~~p~~~~~~~~~~~~~a~l~vg~~~~~~~~~s~~~~~~~~~~I~   82 (161)
T 3p9v_A            5 VSIELNRDLE--IPASYDEVFDLLADVPKSASHFPKVDKLVDLGNNAYRWEMEKVGVDKHAIQSVYACTYHADKEAGKIT   82 (161)
T ss_dssp             EEEEEEEEEE--ESSCHHHHHHHHTCHHHHHTTSTTEEEEEEEETTEEEEEECCBSSGGGCBCCEEEEEEEEETTTTEEE
T ss_pred             EEEEEEEEEE--EcCCHHHHHHHHhChhhhHhhCCCeEEEEEcCCCceEEEEEEEeeeeEEEEEEEEEEEEEcCCCCEEE
Confidence            3444454444  444566777777777762222211 2236778887777664444333333223344555554333333


Q ss_pred             EeeeeeeCCcchhccccccceeeeEEEEecCCCCCCCcceEEEEEEEEEEEEcCccccccchHHHHHHHHHHHHHHHHHH
Q 026771          134 LLSCKLEGSPIVVAQNDKFDASMINRISCDSNSSNSEVQQLTSDAFIEVSIEVPFAFRAFPVEAIESTGTQVLDQILKLM  213 (233)
Q Consensus       134 s~~~~l~G~~~v~~~n~~F~l~l~~~L~~~~~~~~~~~t~l~g~~~L~V~v~lP~~~~llP~~lle~tG~~vL~~Il~~i  213 (233)
                      ....  .|         .|.-.+.|.-+-.+  .+++.|.|++.++.+..+.+++.        ++.+...+++.+.++|
T Consensus        83 ~~~~--~g---------~~~~~l~g~w~f~p--~~~g~t~V~~~~~~e~~~pl~~l--------l~~~~~~~~~~~~~~~  141 (161)
T 3p9v_A           83 WSPI--KG---------EGNGVVSGSWTLSA--KGDNATAVKFQTSAELTVPLPSL--------LKLAISPVIKHEFNSL  141 (161)
T ss_dssp             EEEC--TT---------STTEEEEEEEEEEE--SSSSCEEEEEEEEEEEEECSCGG--------GHHHHHHHHHHHHHHH
T ss_pred             EEEe--cC---------ccceeEEEEEEEEE--CCCCeEEEEEEEEEEEcCcchHH--------HHHHHHHHHHHHHHHH
Confidence            3211  12         34344555333322  12345788888887776655553        4667777777777888


Q ss_pred             HHHHHHHHHHHh
Q 026771          214 LPRFMSQVSRSI  225 (233)
Q Consensus       214 ~~rf~~qL~~Dy  225 (233)
                      ...|...+.+=|
T Consensus       142 v~af~~ra~~~~  153 (161)
T 3p9v_A          142 VDTYMANLKKAF  153 (161)
T ss_dssp             HHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHH
Confidence            877877777655

>2ns9_A Hypothetical protein APE2225; uncharacterized conserved protein, structural genomics, PSI, structure initiative; 1.80A {Aeropyrum pernix} SCOP: d.129.3.10

Probab=95.89  E-value=0.41  Score=36.56  Aligned_cols=138  Identities=9%  Similarity=0.077  Sum_probs=76.3

Q ss_pred             EEEEEEeccCCccHHHhhcCCceeeeeCCc-cceeEecCCeEEEEee-cccEEeEEEeEEEEEEEEEcCCceEEEEeeee
Q 026771           61 RKESVRVRQLQRPLIEYMSLPASQYSVLDA-ERIERVDDNTFRCYVY-RFKFFAFEICPVLLVRVEEQPNGCCIKLLSCK  138 (233)
Q Consensus        61 ~~~~v~v~e~~~~l~~YL~~P~~~~allDp-~~ie~Lgd~~fRl~v~-~l~ff~~eV~P~V~lrV~~~~~g~~i~s~~~~  138 (233)
                      -..++.++.+.+.+=+++.+|+.....+.. ..++ ++++.|+..+. +.+.+.....-.  +++...+.+-++... ..
T Consensus        15 i~~~~~i~ap~e~Vw~~l~D~~~~~~w~p~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~i~~~-~~   90 (157)
T 2ns9_A           15 YEGSFEVSKTPEEVFEFLTDPKRFSRAFPGFKSVE-VEDGSFTIELRLSLGPLRGDARVR--ASFEDLEKPSKATVK-GS   90 (157)
T ss_dssp             EEEEEEESSCHHHHHHHHTCHHHHGGGSTTEEEEE-EETTEEEEEEEEESSSSEEEEEEE--EEEEEEETTTEEEEE-EE
T ss_pred             EeeEEEEcCCHHHHHHHHcCHHHHHhhCCCceEEE-ECCCEEEEEEEEEEcceeEEEEEE--EEEEecCCCcEEEEE-EE
Confidence            345566677788899999999875555533 4566 78888888753 233233333333  333221111122221 12


Q ss_pred             eeCCcchhccccccceeeeEEEEecCCCCCCCcceEEEEEEEEEEEEcCccccccchHHHHHHHHHHHHHHHHHHHHHH
Q 026771          139 LEGSPIVVAQNDKFDASMINRISCDSNSSNSEVQQLTSDAFIEVSIEVPFAFRAFPVEAIESTGTQVLDQILKLMLPRF  217 (233)
Q Consensus       139 l~G~~~v~~~n~~F~l~l~~~L~~~~~~~~~~~t~l~g~~~L~V~v~lP~~~~llP~~lle~tG~~vL~~Il~~i~~rf  217 (233)
                      ..|..      ..|....+-.|.+.     ++.|.+.+..++++    .+++..+...++....+.++++.+..++.++
T Consensus        91 ~~~~~------~~~~~~~~~~l~~~-----~~gT~v~~~~~~~~----~g~l~~~~~~~~~~~~~~~~~~~~~~lk~~~  154 (157)
T 2ns9_A           91 GRGAG------STLDFTLRFAVEPS-----GGGSRVSWVFEGNV----GGLAASMGGRVLDSLARRMINDVISGVKREL  154 (157)
T ss_dssp             EECSS------EEEEEEEEEEEEEE-----TTEEEEEEEEEEEE----EEGGGGSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ecCCC------ccEEEEEEEEEEeC-----CCcEEEEEEEEEEE----CcCHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22211      13444444445552     24577777776664    4555566677777777777777777766554

>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10

Probab=95.88  E-value=0.4  Score=37.12  Aligned_cols=141  Identities=13%  Similarity=0.120  Sum_probs=80.3

Q ss_pred             EEEEeccCCccHHHhhcCCceeeeeC-CccceeEecCCeEEEEee-cccEEeEEEeEEEEEEEEEcCCceEEEEeeeeee
Q 026771           63 ESVRVRQLQRPLIEYMSLPASQYSVL-DAERIERVDDNTFRCYVY-RFKFFAFEICPVLLVRVEEQPNGCCIKLLSCKLE  140 (233)
Q Consensus        63 ~~v~v~e~~~~l~~YL~~P~~~~all-Dp~~ie~Lgd~~fRl~v~-~l~ff~~eV~P~V~lrV~~~~~g~~i~s~~~~l~  140 (233)
                      .++.++.+.+.+=+++.+|+....++ .-..++.++++.|+..+. +.+.+..++...+.+.-...+....+...   ..
T Consensus         7 ~~~~i~ap~e~Vw~~l~D~e~~~~w~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~   83 (162)
T 2pcs_A            7 GSIELKGTVEEVWSKLMDPSILSKCIMGCKSLELIGEDKYKADLQIGIAAVKGKYDAIIEVTDIKPPYHYKLLVN---GE   83 (162)
T ss_dssp             EEEEEESCHHHHHHHHTCHHHHHHHSTTEEEEEEEETTEEEEEEEECCGGGCEEEEEEEEEEEEETTTEEEEEEE---EE
T ss_pred             eEEEecCCHHHHHHHhcCHHHHHhhCCCceEeEEeCCCeEEEEEEEEeeeEEEEEEEEEEEEecCCCcEEEEEEE---ec
Confidence            45566667788999999998765555 334677778888877653 22223333333332211122222222211   11


Q ss_pred             CCcchhccccccceeeeEEEEecCCCCCCCcceEEEEEEEEEEEEcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026771          141 GSPIVVAQNDKFDASMINRISCDSNSSNSEVQQLTSDAFIEVSIEVPFAFRAFPVEAIESTGTQVLDQILKLMLPRFMSQ  220 (233)
Q Consensus       141 G~~~v~~~n~~F~l~l~~~L~~~~~~~~~~~t~l~g~~~L~V~v~lP~~~~llP~~lle~tG~~vL~~Il~~i~~rf~~q  220 (233)
                      |.+      ..+....+-.|.+.    .++.|.+.+.+++.+    .+++..++..++..+.+.++++.+++++.++..+
T Consensus        84 ~~~------~~~~~~~~~~l~~~----~~~gT~v~~~~~~~~----~g~l~~~~~~l~~~~~~~~~~~~~~~lk~~~e~~  149 (162)
T 2pcs_A           84 GGP------GFVNAEGVIDLTPI----NDECTQLTYTYSAEV----GGKVAAIGQRMLGGVAKLLISDFFKKIQKEIAKS  149 (162)
T ss_dssp             ETT------EEEEEEEEEEEEES----SSSEEEEEEEEEEEE----ESGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCC------ccEEEEEEEEEEec----CCCcEEEEEEEEEEE----CCCHHHhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            111      11223333345541    224577777766553    4666777888888888888888888888777643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	233
d2pcsa1	147	Hypothetical protein GKP20 {Geobacillus kaustophil	97.56
d2ns9a1	147	Hypothetical protein APE2225 {Aeropyrum pernix [Ta	96.49
d2d4ra1	146	Hypothetical protein TTHA0849 {Thermus thermophilu	94.44

>d2pcsa1 d.129.3.10 (A:1-147) Hypothetical protein GKP20 {Geobacillus kaustophilus [TaxId: 1462]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: CoxG-like
domain: Hypothetical protein GKP20
species: Geobacillus kaustophilus [TaxId: 1462]

Probab=97.56  E-value=0.0024  Score=47.08  Aligned_cols=140  Identities=11%  Similarity=0.096  Sum_probs=87.9

Q ss_pred             EEEEEeccCCccHHHhhcCCceeeeeCCc-cceeEecCCeEEEEee-cccEEeEEEeEEEEEEEEEcCCceEEEEeeeee
Q 026771           62 KESVRVRQLQRPLIEYMSLPASQYSVLDA-ERIERVDDNTFRCYVY-RFKFFAFEICPVLLVRVEEQPNGCCIKLLSCKL  139 (233)
Q Consensus        62 ~~~v~v~e~~~~l~~YL~~P~~~~allDp-~~ie~Lgd~~fRl~v~-~l~ff~~eV~P~V~lrV~~~~~g~~i~s~~~~l  139 (233)
                      +.++.|+.+++.+=+.|.||++...|++- +.++.+++++|..++. +++.+.....=.+.+.-.............  .
T Consensus         4 s~~~~i~~~~e~v~~~l~D~~~~~~~~Pg~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~   81 (147)
T d2pcsa1           4 NGSIELKGTVEEVWSKLMDPSILSKCIMGCKSLELIGEDKYKADLQIGIAAVKGKYDAIIEVTDIKPPYHYKLLVNG--E   81 (147)
T ss_dssp             EEEEEEESCHHHHHHHHTCHHHHHHHSTTEEEEEEEETTEEEEEEEECCGGGCEEEEEEEEEEEEETTTEEEEEEEE--E
T ss_pred             CceEEeCCCHHHHHHHHcCHHHHHhhCcchhhceecCCCEEEEEEEEeecceeeeeEEEEEEeccCcccceeEeecc--c
Confidence            45667777789999999999998788764 6699999999998877 566666665544444444444432211111  1


Q ss_pred             eCCcchhccccccceeeeEEEEecCCCCCCCcceEEEEEEEEEEEEcCccccccchHHHHHHHHHHHHHHHHHHHHHHH
Q 026771          140 EGSPIVVAQNDKFDASMINRISCDSNSSNSEVQQLTSDAFIEVSIEVPFAFRAFPVEAIESTGTQVLDQILKLMLPRFM  218 (233)
Q Consensus       140 ~G~~~v~~~n~~F~l~l~~~L~~~~~~~~~~~t~l~g~~~L~V~v~lP~~~~llP~~lle~tG~~vL~~Il~~i~~rf~  218 (233)
                      .+.       ....+...-.+..    ..++.|.|.+++++++    .+++..+...+++.+.+.++++.+.+++.++.
T Consensus        82 ~~~-------~~~~~~~~~~~~~----~~~~~T~v~~~~~~~~----~g~l~~l~~~li~~~~~~~~~~f~~~~~~~l~  145 (147)
T d2pcsa1          82 GGP-------GFVNAEGVIDLTP----INDECTQLTYTYSAEV----GGKVAAIGQRMLGGVAKLLISDFFKKIQKEIA  145 (147)
T ss_dssp             ETT-------EEEEEEEEEEEEE----SSSSEEEEEEEEEEEE----ESGGGGGCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccc-------chhcceeEEeeec----ccCCcEEEEEEEEEEE----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            111       1112222222222    2346688888777653    45677778888888888877777777776664

>d2ns9a1 d.129.3.10 (A:10-156) Hypothetical protein APE2225 {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: CoxG-like
domain: Hypothetical protein APE2225
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.49  E-value=0.075  Score=37.67  Aligned_cols=140  Identities=9%  Similarity=0.008  Sum_probs=85.6

Q ss_pred             EEEEEEeccCCccHHHhhcCCceeeeeCCc-cceeEecCCeEEEEeecccEEeEEEeEEEEEEEEEcCCceEEEEeeeee
Q 026771           61 RKESVRVRQLQRPLIEYMSLPASQYSVLDA-ERIERVDDNTFRCYVYRFKFFAFEICPVLLVRVEEQPNGCCIKLLSCKL  139 (233)
Q Consensus        61 ~~~~v~v~e~~~~l~~YL~~P~~~~allDp-~~ie~Lgd~~fRl~v~~l~ff~~eV~P~V~lrV~~~~~g~~i~s~~~~l  139 (233)
                      -+.+|.|..+++.+=+||.|+.+...++.- +.++..+++...-...+...++.......................  ..
T Consensus         5 ~e~si~I~ap~e~Vw~~l~D~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~   82 (147)
T d2ns9a1           5 YEGSFEVSKTPEEVFEFLTDPKRFSRAFPGFKSVEVEDGSFTIELRLSLGPLRGDARVRASFEDLEKPSKATVKGS--GR   82 (147)
T ss_dssp             EEEEEEESSCHHHHHHHHTCHHHHGGGSTTEEEEEEETTEEEEEEEEESSSSEEEEEEEEEEEEEETTTEEEEEEE--EE
T ss_pred             EEEEEEEcCCHHHHHHHHhCHhhhhhcccchhheeecccccceeEEEEEEEEeeEeeeeeeeeeecCCcceeEEEe--ee
Confidence            345677787889999999999987666633 445544443333333445555555555555555555554322221  12


Q ss_pred             eCCcchhccccccceeeeEEEEecCCCCCCCcceEEEEEEEEEEEEcCccccccchHHHHHHHHHHHHHHHHHHHHHHH
Q 026771          140 EGSPIVVAQNDKFDASMINRISCDSNSSNSEVQQLTSDAFIEVSIEVPFAFRAFPVEAIESTGTQVLDQILKLMLPRFM  218 (233)
Q Consensus       140 ~G~~~v~~~n~~F~l~l~~~L~~~~~~~~~~~t~l~g~~~L~V~v~lP~~~~llP~~lle~tG~~vL~~Il~~i~~rf~  218 (233)
                      .|..       .+....+-.|.+.     ++.|.+.+..++.    +++++..++..++++.-..+++..+..++.++.
T Consensus        83 ~~~~-------~~~~~~~~~l~~~-----~~gt~v~~~~~~~----~~g~~~~l~~~~v~~~~~~~~~~~l~~lk~~~~  145 (147)
T d2ns9a1          83 GAGS-------TLDFTLRFAVEPS-----GGGSRVSWVFEGN----VGGLAASMGGRVLDSLARRMINDVISGVKRELG  145 (147)
T ss_dssp             CSSE-------EEEEEEEEEEEEE-----TTEEEEEEEEEEE----EEEGGGGSCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cccc-------ceeeEEEEEEEec-----CCCcEEEEEEEEE----eCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            2221       1222223335552     3556676666544    457788899999999999999999999988874

>d2d4ra1 d.129.3.6 (A:2-147) Hypothetical protein TTHA0849 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: oligoketide cyclase/dehydrase-like
domain: Hypothetical protein TTHA0849
species: Thermus thermophilus [TaxId: 274]

Probab=94.44  E-value=0.32  Score=34.90  Aligned_cols=135  Identities=11%  Similarity=0.085  Sum_probs=72.6

Q ss_pred             EEEEeccCCccHHHhhcCCceeeeeCCc-cceeEe--cCCeEEEEeecccEEeEEEeEEEEEEEEEcCCceEEEEeeeee
Q 026771           63 ESVRVRQLQRPLIEYMSLPASQYSVLDA-ERIERV--DDNTFRCYVYRFKFFAFEICPVLLVRVEEQPNGCCIKLLSCKL  139 (233)
Q Consensus        63 ~~v~v~e~~~~l~~YL~~P~~~~allDp-~~ie~L--gd~~fRl~v~~l~ff~~eV~P~V~lrV~~~~~g~~i~s~~~~l  139 (233)
                      .++.++.++..+=+|+.|.++....+.. +.++-+  +++..+... ...+.+.....+..+.....+....++..    
T Consensus         5 ~~~~I~ap~~~V~~~l~D~~~~~~w~p~~~~~~il~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~----   79 (146)
T d2d4ra1           5 AERYIPAPPERVYRLAKDLEGLKPYLKEVESLEVVAREGARTRSRW-VAVAMGKKVRWLEEEEWDDENLRNRFFSP----   79 (146)
T ss_dssp             EEEEESSCHHHHHHHHHCHHHHGGGCTTEEEEEEEEEETTEEEEEE-EEEETTEEEEEEEEEEEETTTTEEEEEEE----
T ss_pred             EEEEECCCHHHHHHHHHChhhHHhhccccEEEEEEEecCCcceEEE-EEEeeeeeEEEEEEEEEcCCCCEEEEEEc----
Confidence            4566777788888888888875444322 333333  344444442 33444455555554444433332233222    


Q ss_pred             eCCcchhccccccceeeeEEEEecCCCCCCCcceEEEEEEEEEEEEcCccccccchHHHHHHHHHHHHHHHHHHHHHHH
Q 026771          140 EGSPIVVAQNDKFDASMINRISCDSNSSNSEVQQLTSDAFIEVSIEVPFAFRAFPVEAIESTGTQVLDQILKLMLPRFM  218 (233)
Q Consensus       140 ~G~~~v~~~n~~F~l~l~~~L~~~~~~~~~~~t~l~g~~~L~V~v~lP~~~~llP~~lle~tG~~vL~~Il~~i~~rf~  218 (233)
                      .|. .     .+|....  .+.+.     +++|.+.+.++.++.  +| ++..++..++++.-+.-+++.++.++.|+.
T Consensus        80 ~g~-~-----~~~~g~w--~l~~~-----~~gT~v~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~  142 (146)
T d2d4ra1          80 EGD-F-----DRYEGTW--VFLPE-----GEGTRVVLTLTYELT--IP-IFGGLLRKLVQKLMQENVESLLKGLEERVL  142 (146)
T ss_dssp             EES-C-----SEEEEEE--EEEEC-----SSSEEEEEEEEEECC--CT-TTTTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCC-c-----ceEEEEE--EEEec-----CCceEEEEEEEEEEc--Cc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            121 1     1222222  34552     245777777766543  33 345677777777777777777777777654