Citrus Sinensis ID: 026784

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230---
MHLDIYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHTCALTSKGALYAWGGCQAGQLGLGPQTRSFSFIPNESDTYFRNIPILVVPNGVQLVACGHSHTLVYMRDGKIHGWGYNSYGQAANEKSTYAWYPSPVDWCVGEVRKLAAGGGHSAVLTDACSLKELCEFRLAESVTLSNASEIEDVASRTGSEALARLCERLREHLLHGDEFDCDDDTRNGND
ccccEEEEEcccccccccccccccccccccEEEcccccccEEEEEcccccEEEEEccccEEEEEccccccccccccccccEEEccccccccccEEEEEccccEEEEEcccccEEEEEccccEEEEEccccccccccccccEEEcEEcccccccEEEEEcccccEEEEEccccEEEEccccccccccccccccEEEccccccccEEEEEEEEEEEEEEcccEEEEccccccccc
cccEEEEEcccccccccccccccccccccccHHHHHcccEEEEEEEcccEEEEEEcccEEEEEcccccccccccccccccccccccccccHHHHHHHHccccEEEEEEcccEEEEEEcccEEEEEccccccccccccccccccccEHHHHcccEEEEEEcccEEEEEEcccEEEEEEEccccccccccccccccccccccHHHHHHHHHHHcccHEEEccccccccccccccc
mhldiytwglgsvgqlghcslqsgdkellpRRVVALDGifikdvacggvhtcaltskgalyawggcqagqlglgpqtrsfsfipnesdtyfrnipilvvpngvqlvacghshtlvymrdgkihgwgynsygqaanekstyawypspvdwcVGEVRklaaggghsavlTDACSLKELCEFRlaesvtlsnaseiEDVASRTGSEALARLCERLREHllhgdefdcdddtrngnd
MHLDIYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHTCALTSKGALYAWGGCQAGQLGLGPQTRSFSFIPNESDTYFRNIPILVVPNGVQLVACGHSHTLVYMRDGKIHGWGYNSYGQAANEKSTYAWYPSPVDWCVGEVRKLAAGGGHSAVLTDACSLKELCEFRLAEsvtlsnaseiedvasrtGSEALARLCERLREhllhgdefdcdddtrngnd
MHLDIYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHTCALTSKGALYAWGGCQAGQLGLGPQTRSFSFIPNESDTYFRNIPILVVPNGVQLVACGHSHTLVYMRDGKIHGWGYNSYGQAANEKSTYAWYPSPVDWCVGEVRKLAAGGGHSAVLTDACSLKELCEFRLAESVTLSNASEIEDVASRTGSealarlcerlrehllhGDEFDCDDDTRNGND
**LDIYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHTCALTSKGALYAWGGCQAGQLGLGPQTRSFSFIPNESDTYFRNIPILVVPNGVQLVACGHSHTLVYMRDGKIHGWGYNSYGQAANEKSTYAWYPSPVDWCVGEVRKLAAGGGHSAVLTDACSLKELCEFRLAESVTLSN**************ALARLCERLREHLLHG**************
MHLDIYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHTCALTSKGALYAWGGCQAGQLGLGPQTRSFSFIPNESDTYFRNIPILVVPNGVQLVACGHSHTLVYMRDGKIHGWGYNSYGQAANEKSTYAWYPSPVDWCVGEVRKLAAGGGHSAVLTDACSLKELCEFRLAESV*******************LARLCERLREHLLHGDEFDCD*DT*N***
MHLDIYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHTCALTSKGALYAWGGCQAGQLGLGPQTRSFSFIPNESDTYFRNIPILVVPNGVQLVACGHSHTLVYMRDGKIHGWGYNSYGQAANEKSTYAWYPSPVDWCVGEVRKLAAGGGHSAVLTDACSLKELCEFRLAESVTLSNASEIEDVASRTGSEALARLCERLREHLLHGDEFDCDDDTRNGND
*HLDIYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHTCALTSKGALYAWGGCQAGQLGLGPQTRSFSFIPNESDTYFRNIPILVVPNGVQLVACGHSHTLVYMRDGKIHGWGYNSYGQAANEKSTYAWYPSPVDWCVGEVRKLAAGGGHSAVLTDACSLKELCEFRLAESVTLSNASEIEDVASRTGSEALARLCERLREHLLHGDEFDCDD*******
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MHLDIYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHTCALTSKGALYAWGGCQAGQLGLGPQTRSFSFIPNESDTYFRNIPILVVPNGVQLVACGHSHTLVYMRDGKIHGWGYNSYGQAANEKSTYAWYPSPVDWCVGEVRKLAAGGGHSAVLTDACSLKELCEFRLAESVTLSNASEIEDVASRTGSEALARLCERLREHLLHGDEFDCDDDTRNGND
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query233 2.2.26 [Sep-21-2011]
Q6PAV2 1057 Probable E3 ubiquitin-pro yes no 0.630 0.139 0.396 9e-16
F2Z461 1003 E3 ISG15--protein ligase no no 0.652 0.151 0.349 1e-15
Q8IVU3 1022 Probable E3 ubiquitin-pro yes no 0.652 0.148 0.343 2e-15
Q5PQN1 1057 Probable E3 ubiquitin-pro yes no 0.630 0.139 0.390 2e-15
Q9FN03 440 Ultraviolet-B receptor UV no no 0.626 0.331 0.358 4e-15
Q99LJ7 551 RCC1 and BTB domain-conta no no 0.630 0.266 0.331 6e-15
Q5GLZ8 1057 Probable E3 ubiquitin-pro no no 0.630 0.139 0.390 6e-15
Q6P798 551 RCC1 and BTB domain-conta no no 0.630 0.266 0.331 9e-15
Q4R828376 RCC1 domain-containing pr N/A no 0.656 0.406 0.298 2e-14
Q8BTU7377 RCC1 domain-containing pr no no 0.660 0.408 0.311 4e-14
>sp|Q6PAV2|HERC4_MOUSE Probable E3 ubiquitin-protein ligase HERC4 OS=Mus musculus GN=Herc4 PE=2 SV=2 Back     alignment and function desciption
 Score = 84.0 bits (206), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 67/169 (39%), Positives = 84/169 (49%), Gaps = 22/169 (13%)

Query: 5   IYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHTCALTSKGALYAWG 64
           +YT G   +GQLGH   +   K+  P +VVALD   I  VACG  HT AL  KG +YAWG
Sbjct: 55  VYTCGCNDLGQLGH---EKSRKK--PEQVVALDAQNIVAVACGEAHTLALNDKGQVYAWG 109

Query: 65  GCQAGQLGLGPQTRSFSFIPNESDTYFRNIPILVVPNGVQLVACGHSHTLVYMRDGKIHG 124
               GQLGL         +P       RNI  L     VQ VACG+ H+L   +  ++  
Sbjct: 110 LDSDGQLGLQGSEECIR-VP-------RNIKSLSDIQIVQ-VACGYYHSLALSKASEVFC 160

Query: 125 WGYNSYGQAAN----EKSTYAWYPSPVDWCVG-EVRKLAAGGGHSAVLT 168
           WG N YGQ       +K T    P  +   +G    ++AAGG HS VLT
Sbjct: 161 WGQNKYGQLGLGIDCQKQT---SPQLIKSLLGIPFMQVAAGGAHSFVLT 206
Probable E3 ubiquitin-protein ligase involved in either protein trafficking or in the distribution of cellular structures. Required for spermatozoon maturation and fertility, and for the removal of the cytoplasmic droplet of the spermatozoon. E3 ubiquitin-protein ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfer it to targeted substrates.
Mus musculus (taxid: 10090)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -
>sp|F2Z461|HERC6_MOUSE E3 ISG15--protein ligase Herc6 OS=Mus musculus GN=Herc6 PE=2 SV=1 Back     alignment and function description
>sp|Q8IVU3|HERC6_HUMAN Probable E3 ubiquitin-protein ligase HERC6 OS=Homo sapiens GN=HERC6 PE=2 SV=2 Back     alignment and function description
>sp|Q5PQN1|HERC4_RAT Probable E3 ubiquitin-protein ligase HERC4 OS=Rattus norvegicus GN=Herc4 PE=2 SV=1 Back     alignment and function description
>sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana GN=UVR8 PE=1 SV=1 Back     alignment and function description
>sp|Q99LJ7|RCBT2_MOUSE RCC1 and BTB domain-containing protein 2 OS=Mus musculus GN=Rcbtb2 PE=2 SV=1 Back     alignment and function description
>sp|Q5GLZ8|HERC4_HUMAN Probable E3 ubiquitin-protein ligase HERC4 OS=Homo sapiens GN=HERC4 PE=1 SV=1 Back     alignment and function description
>sp|Q6P798|RCBT2_RAT RCC1 and BTB domain-containing protein 2 OS=Rattus norvegicus GN=Rcbtb2 PE=2 SV=1 Back     alignment and function description
>sp|Q4R828|RCCD1_MACFA RCC1 domain-containing protein 1 OS=Macaca fascicularis GN=RCCD1 PE=2 SV=1 Back     alignment and function description
>sp|Q8BTU7|RCCD1_MOUSE RCC1 domain-containing protein 1 OS=Mus musculus GN=Rccd1 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query233
255569912 478 Protein pim1, putative [Ricinus communis 0.832 0.405 0.839 1e-108
224120790 462 predicted protein [Populus trichocarpa] 0.699 0.352 0.885 5e-98
356568831 474 PREDICTED: X-linked retinitis pigmentosa 0.703 0.345 0.758 2e-97
22795248 505 putative chromosome condensation regulat 0.824 0.380 0.770 8e-96
222625331 581 hypothetical protein OsJ_11655 [Oryza sa 0.824 0.330 0.770 1e-95
218193272 555 hypothetical protein OsI_12517 [Oryza sa 0.798 0.335 0.766 2e-95
225451821 478 PREDICTED: probable E3 ubiquitin-protein 0.884 0.430 0.841 3e-95
242038901 485 hypothetical protein SORBIDRAFT_01g01510 0.781 0.375 0.765 3e-94
259490348 480 uncharacterized protein LOC100304276 [Ze 0.785 0.381 0.769 3e-94
357502467 476 RCC1 and BTB domain-containing protein [ 0.738 0.361 0.814 4e-94
>gi|255569912|ref|XP_002525919.1| Protein pim1, putative [Ricinus communis] gi|223534748|gb|EEF36439.1| Protein pim1, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 188/224 (83%), Positives = 206/224 (91%)

Query: 4   DIYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHTCALTSKGALYAW 63
           ++YTWGLGS GQLGH SLQSG+KELLPRRVVALDGI I DVACGGVHTCA+T KGALYAW
Sbjct: 248 EVYTWGLGSTGQLGHTSLQSGNKELLPRRVVALDGILITDVACGGVHTCAVTQKGALYAW 307

Query: 64  GGCQAGQLGLGPQTRSFSFIPNESDTYFRNIPILVVPNGVQLVACGHSHTLVYMRDGKIH 123
           GG Q GQLGLGPQT SFSFIP++++++ RNIP LV P GVQLVACGHSHTL+ +RDG+IH
Sbjct: 308 GGSQFGQLGLGPQTGSFSFIPSDTESFLRNIPALVFPTGVQLVACGHSHTLICLRDGRIH 367

Query: 124 GWGYNSYGQAANEKSTYAWYPSPVDWCVGEVRKLAAGGGHSAVLTDACSLKELCEFRLAE 183
           GWGYNSYGQAANEK+TYAWYPSPVDWCVGEVRKLAAGGGHSAVLTDACSLKELCEFRLA+
Sbjct: 368 GWGYNSYGQAANEKTTYAWYPSPVDWCVGEVRKLAAGGGHSAVLTDACSLKELCEFRLAD 427

Query: 184 SVTLSNASEIEDVASRTGSEALARLCERLREHLLHGDEFDCDDD 227
           SVTLSNASEIEDVASRTG++ALARLC RLREHLL G E D +DD
Sbjct: 428 SVTLSNASEIEDVASRTGADALARLCGRLREHLLDGSELDYEDD 471

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224120790|ref|XP_002330952.1| predicted protein [Populus trichocarpa] gi|222873146|gb|EEF10277.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356568831|ref|XP_003552611.1| PREDICTED: X-linked retinitis pigmentosa GTPase regulator-like [Glycine max] Back     alignment and taxonomy information
>gi|22795248|gb|AAN08220.1| putative chromosome condensation regulator [Oryza sativa Japonica Group] gi|108709680|gb|ABF97475.1| regulator of chromosome condensation, putative, expressed [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|222625331|gb|EEE59463.1| hypothetical protein OsJ_11655 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|218193272|gb|EEC75699.1| hypothetical protein OsI_12517 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|225451821|ref|XP_002281545.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1 [Vitis vinifera] gi|298204453|emb|CBI16933.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|242038901|ref|XP_002466845.1| hypothetical protein SORBIDRAFT_01g015100 [Sorghum bicolor] gi|241920699|gb|EER93843.1| hypothetical protein SORBIDRAFT_01g015100 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|259490348|ref|NP_001159191.1| uncharacterized protein LOC100304276 [Zea mays] gi|223942555|gb|ACN25361.1| unknown [Zea mays] gi|414871691|tpg|DAA50248.1| TPA: putative regulator of chromosome condensation (RCC1) family protein [Zea mays] Back     alignment and taxonomy information
>gi|357502467|ref|XP_003621522.1| RCC1 and BTB domain-containing protein [Medicago truncatula] gi|355496537|gb|AES77740.1| RCC1 and BTB domain-containing protein [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query233
TAIR|locus:2076532471 AT3G02300 "AT3G02300" [Arabido 0.854 0.422 0.778 3.8e-85
TAIR|locus:2159295445 RUG3 "RCC1/UVR8/GEF-like 3" [A 0.669 0.350 0.364 1.3e-19
TAIR|locus:2163986 440 UVR8 "UVB-RESISTANCE 8" [Arabi 0.626 0.331 0.364 3.3e-18
UNIPROTKB|F1NCH3 1048 HERC4 "Uncharacterized protein 0.639 0.142 0.401 1.1e-17
MGI|MGI:1914595 1057 Herc4 "hect domain and RLD 4" 0.630 0.139 0.396 6.4e-17
RGD|1309901378 Rccd1 "RCC1 domain containing 0.300 0.185 0.453 7.4e-17
ZFIN|ZDB-GENE-030131-7951 531 rcbtb1 "regulator of chromosom 0.665 0.291 0.299 1e-16
RGD|1310971 1057 Herc4 "HECT and RLD domain con 0.643 0.141 0.385 1e-16
MGI|MGI:2444156377 Rccd1 "RCC1 domain containing 0.300 0.185 0.453 1.9e-16
UNIPROTKB|F1N7C1 1016 HERC6 "Uncharacterized protein 0.652 0.149 0.349 2.1e-16
TAIR|locus:2076532 AT3G02300 "AT3G02300" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 852 (305.0 bits), Expect = 3.8e-85, P = 3.8e-85
 Identities = 155/199 (77%), Positives = 178/199 (89%)

Query:     4 DIYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHTCALTSKGALYAW 63
             ++YTWGLGS+GQLGH SLQSGDKEL+PRRVV LDG+ +K+VACGGVHTCAL+ +GALYAW
Sbjct:   247 EVYTWGLGSMGQLGHVSLQSGDKELIPRRVVGLDGVSMKEVACGGVHTCALSLEGALYAW 306

Query:    64 GGCQAGQLGLGPQTRSFSFIPNESDTYFRNIPILVVPNGVQLVACGHSHTLVYMRDGKIH 123
             GG QAGQLGLGPQ+  F  + N S+   RN+P+LV+P  V+LVACGHSHTLVYMR+G+I 
Sbjct:   307 GGGQAGQLGLGPQSGFFFSVSNGSEMLLRNVPVLVIPTDVRLVACGHSHTLVYMREGRIC 366

Query:   124 GWGYNSYGQAANEKSTYAWYPSPVDWCVGEVRKLAAGGGHSAVLTDACSLKELCEFRLAE 183
             GWGYNSYGQAANEKS+YAWYPSPVDWCVG+VRKLAAGGGHSAVLTDA SLKELCEF+LA+
Sbjct:   367 GWGYNSYGQAANEKSSYAWYPSPVDWCVGQVRKLAAGGGHSAVLTDAFSLKELCEFQLAD 426

Query:   184 SVTLSNASEIEDVASRTGS 202
             SV LSNASEI+DVA R GS
Sbjct:   427 SVNLSNASEIQDVAFRMGS 445
GO:0008150 "biological_process" evidence=ND
GO:0008536 "Ran GTPase binding" evidence=ISS
TAIR|locus:2159295 RUG3 "RCC1/UVR8/GEF-like 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2163986 UVR8 "UVB-RESISTANCE 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1NCH3 HERC4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:1914595 Herc4 "hect domain and RLD 4" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1309901 Rccd1 "RCC1 domain containing 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-7951 rcbtb1 "regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|1310971 Herc4 "HECT and RLD domain containing E3 ubiquitin protein ligase 4" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:2444156 Rccd1 "RCC1 domain containing 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1N7C1 HERC6 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_scaffold_155000026
hypothetical protein (462 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query233
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 2e-15
COG5184 476 COG5184, ATS1, Alpha-tubulin suppressor and relate 3e-14
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 1e-12
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 8e-11
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 8e-07
COG5184 476 COG5184, ATS1, Alpha-tubulin suppressor and relate 4e-06
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 5e-06
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 9e-05
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 1e-04
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information 
 Score = 74.5 bits (183), Expect = 2e-15
 Identities = 43/142 (30%), Positives = 58/142 (40%), Gaps = 15/142 (10%)

Query: 1   MHLD----IYTWGLGSVGQLGHCS-LQSGDKELLPRRVVALDGIFIKDVACGGVHTCALT 55
           + LD    IY WG+   GQLG  S  + G     P     L G+ I  ++ G  H+  L 
Sbjct: 297 LALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHSLILR 356

Query: 56  SKGALYAWGGCQAGQLGLGPQTRSFSFIPNESDTYFRNIPILVVPNGVQLVACGHSHTLV 115
             G LYA+G    GQLG          I  E          L V   ++ VACG  H + 
Sbjct: 357 KDGTLYAFGRGDRGQLG----------IQEEITIDVSTPTKLSVAIKLEQVACGTHHNIA 406

Query: 116 YMRDGKIHGWGYNSYGQAANEK 137
              DG ++ WG+  +G   N  
Sbjct: 407 RTDDGSVYSWGWGEHGNLGNGP 428

Length = 476
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 233
KOG1427 443 consensus Uncharacterized conserved protein, conta 99.97
COG5184476 ATS1 Alpha-tubulin suppressor and related RCC1 dom 99.97
COG5184 476 ATS1 Alpha-tubulin suppressor and related RCC1 dom 99.97
KOG1427 443 consensus Uncharacterized conserved protein, conta 99.94
KOG1428 3738 consensus Inhibitor of type V adenylyl cyclases/Ne 99.9
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.89
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.86
KOG1428 3738 consensus Inhibitor of type V adenylyl cyclases/Ne 99.72
PF0041551 RCC1: Regulator of chromosome condensation (RCC1) 99.55
PF0041551 RCC1: Regulator of chromosome condensation (RCC1) 99.48
PF1354030 RCC1_2: Regulator of chromosome condensation (RCC1 99.42
PF1354030 RCC1_2: Regulator of chromosome condensation (RCC1 99.41
KOG0941 850 consensus E3 ubiquitin protein ligase [Posttransla 99.11
KOG0941 850 consensus E3 ubiquitin protein ligase [Posttransla 98.8
KOG3669 705 consensus Uncharacterized conserved protein, conta 91.97
PF07569219 Hira: TUP1-like enhancer of split; InterPro: IPR01 90.93
PF11725 1774 AvrE: Pathogenicity factor; InterPro: IPR021085 Th 84.83
KOG0943 3015 consensus Predicted ubiquitin-protein ligase/hyper 83.69
smart0070635 TECPR Beta propeller repeats in Physarum polycepha 83.45
smart0070635 TECPR Beta propeller repeats in Physarum polycepha 82.6
KOG3669 705 consensus Uncharacterized conserved protein, conta 81.26
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown] Back     alignment and domain information 
Probab=99.97  E-value=7.5e-32  Score=218.07  Aligned_cols=169  Identities=28%  Similarity=0.361  Sum_probs=139.1

Q ss_pred             CCCcEEEEeCCCCCCcCCCCccCCCcccCCeEeeccCCCcEEEEEeCCceeEEEEcCCcEEEeeCCCCCccCCCCCCCCc
Q 026784            1 MHLDIYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHTCALTSKGALYAWGGCQAGQLGLGPQTRSF   80 (233)
Q Consensus         1 ~~G~v~~wG~n~~GqLG~~~~~~~~~~~~p~~v~~l~~~~i~~is~G~~hs~~lt~~G~v~~wG~n~~GqlG~~~~~~~~   80 (233)
                      ++|++|+||.|..||||+++.   .....|+.|+.|...+|++.+||++||++||++|+||+||.|.+||||.++..+..
T Consensus        75 megk~~~wGRNekGQLGhgD~---k~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeNK~GQlGlgn~~~~v  151 (443)
T KOG1427|consen   75 MEGKCYTWGRNEKGQLGHGDM---KQRERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFGENKYGQLGLGNAKNEV  151 (443)
T ss_pred             cccceeecccCccCccCccch---hhccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEeccccccccccccccccc
Confidence            689999999999999999965   56778999999999999999999999999999999999999999999999876641


Q ss_pred             ccCCCCCCccccccCeeecCCCeEEEecCCceEEEEEcCCcEEEeeCCCCCCCCCCCCC--------------ccccCee
Q 026784           81 SFIPNESDTYFRNIPILVVPNGVQLVACGHSHTLVYMRDGKIHGWGYNSYGQAANEKST--------------YAWYPSP  146 (233)
Q Consensus        81 ~~~~~~~~~~~~~~p~~~~~~~i~~i~~G~~hs~~L~~~G~v~~wG~n~~gqLg~~~~~--------------~~~~p~~  146 (233)
                      ..          ..|.-+....|..|+||.+|++.|+..+.+..+|.-.|||||++...              .+..|..
T Consensus       152 ~s----------~~~~~~~~~~v~~v~cga~ftv~l~~~~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~~pr~~~  221 (443)
T KOG1427|consen  152 ES----------TPLPCVVSDEVTNVACGADFTVWLSSTESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEAQPRPKA  221 (443)
T ss_pred             cc----------CCCccccCccceeeccccceEEEeecccceeecCCccccccccCcchhhccccccceeeeecCCCccc
Confidence            11          11112235679999999999999999999999999999999997432              1223444


Q ss_pred             ccCCCC-CEEEEeccCCceEEEEcCCCceeeEEeeec
Q 026784          147 VDWCVG-EVRKLAAGGGHSAVLTDACSLKELCEFRLA  182 (233)
Q Consensus       147 v~~~~~-~i~~i~~G~~hs~~l~~~g~v~~~g~~g~~  182 (233)
                      |..+.. .|++++||.+|++|++++.+||.||-.|.+
T Consensus       222 i~~~dgvqiv~~acg~nhtvavd~nkrVysWGFGGyG  258 (443)
T KOG1427|consen  222 IASLDGVQIVKVACGTNHTVAVDKNKRVYSWGFGGYG  258 (443)
T ss_pred             cccccceeeEEEeccCcceeeecCCccEEEecccccc
Confidence            444444 799999999999999999999665544444

>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown] Back     alignment and domain information
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] Back     alignment and domain information
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) Back     alignment and domain information
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) Back     alignment and domain information
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B Back     alignment and domain information
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B Back     alignment and domain information
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only] Back     alignment and domain information
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin Back     alignment and domain information
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others Back     alignment and domain information
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins Back     alignment and domain information
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins Back     alignment and domain information
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query233
4d9s_A 406 Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv 3e-16
4dnv_A370 Crystal Structure Of The W285f Mutant Of Uvb-Resist 4e-16
4dnw_A374 Crystal Structure Of Uvb-Resistance Protein Uvr8 Le 4e-16
4dnu_A372 Crystal Structure Of The W285a Mutant Of Uvb-Resist 5e-15
3kci_A389 The Third Rld Domain Of Herc2 Length = 389 2e-10
3of7_A473 The Crystal Structure Of Prp20p From Saccharomyces 8e-07
3mvd_K 423 Crystal Structure Of The Chromatin Factor Rcc1 In C 2e-06
1a12_A413 Regulator Of Chromosome Condensation (Rcc1) Of Huma 3e-05
1i2m_B402 Ran-Rcc1-So4 Complex Length = 402 3e-05
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 Back     alignment and structure 
Iteration: 1

 Score = 82.0 bits (201), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/159 (35%), Positives = 77/159 (48%), Gaps = 13/159 (8%)
Query: 3   LDIYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHTCALTSKGALYA 62
           +++Y+WG G  G+LGH +  S D    P  + AL GI IK +ACG  H  A+T +G + +
Sbjct: 88  MEVYSWGWGDFGRLGHGN--SSDL-FTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQS 144
Query: 63  WGGCQAGQLGLGPQTRSFSFIPNESDTYFRNIPILVVPNGVQLVACGHSHTLVYMRDGKI 122
           WG  Q GQLGLG      S +P +    F  I I       ++VA G  HT     DG +
Sbjct: 145 WGRNQNGQLGLGDTED--SLVPQKIQA-FEGIRI-------KMVAAGAEHTAAVTEDGDL 194
Query: 123 HGWGYNSYGQAANEKSTYAWYPSPVDWCVGEVRKLAAGG 161
           +GWG+  YG       T    P  V    GE   + A G
Sbjct: 195 YGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACG 233
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 Back     alignment and structure
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374 Back     alignment and structure
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372 Back     alignment and structure
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 Back     alignment and structure
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces Cerevisiae And Its Binding Properties To Gsp1p And Histones Length = 473 Back     alignment and structure
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex With The Nucleosome Core Particle Length = 423 Back     alignment and structure
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human Length = 413 Back     alignment and structure
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex Length = 402 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query233
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 4e-41
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 2e-39
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 1e-35
4d9s_A 406 UVB-resistance protein UVR8; UV resistance, UV-B p 2e-35
4d9s_A 406 UVB-resistance protein UVR8; UV resistance, UV-B p 4e-26
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 2e-25
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 6e-41
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 3e-34
1a12_A 413 RCC1, regulator of chromosome condensation 1; guan 3e-32
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 1e-31
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 5e-30
1a12_A 413 RCC1, regulator of chromosome condensation 1; guan 1e-29
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 1e-21
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 1e-37
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 1e-36
3kci_A 389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 2e-35
3kci_A 389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 2e-23
3mvd_K423 Regulator of chromosome condensation; protein-DNA 3e-37
3mvd_K423 Regulator of chromosome condensation; protein-DNA 2e-34
3mvd_K 423 Regulator of chromosome condensation; protein-DNA 3e-31
3mvd_K 423 Regulator of chromosome condensation; protein-DNA 4e-27
3mvd_K423 Regulator of chromosome condensation; protein-DNA 4e-21
3of7_A473 Regulator of chromosome condensation; beta-propell 2e-36
3of7_A473 Regulator of chromosome condensation; beta-propell 7e-34
3of7_A 473 Regulator of chromosome condensation; beta-propell 4e-32
3of7_A 473 Regulator of chromosome condensation; beta-propell 1e-23
3of7_A 473 Regulator of chromosome condensation; beta-propell 4e-10
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 3e-20
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 6e-20
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 2e-18
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 3e-17
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 6e-11
3qhy_B 282 Beta-lactamase inhibitory protein II; enyzme-inhib 1e-08
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
 Score =  143 bits (364), Expect = 4e-41
 Identities = 50/170 (29%), Positives = 78/170 (45%), Gaps = 20/170 (11%)

Query: 4   DIYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHTCALTSKGALYAW 63
           D+Y WG G  G LG          L+P RV +  G  +  VACG  HT +++  GALY +
Sbjct: 193 DLYGWGWGRYGNLGLGDRTD---RLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTY 249

Query: 64  GGCQAGQLGLGPQTRSFSFIPNESDTYFRNIPILV---VPNGVQLVACGHSHTLVYMRDG 120
           G  + GQLG G             D     IP  +     + +  ++ G  HT+    DG
Sbjct: 250 GWSKYGQLGHG-------------DLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDG 296

Query: 121 KIHGWGYNSYGQAANEKSTYAWYPSPVDWCVGE-VRKLAAGGGHSAVLTD 169
           K++GWG+N +GQ     +     P  V +   + V +++ G  H+  +T+
Sbjct: 297 KLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTE 346
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query233
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 100.0
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 100.0
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 100.0
3kci_A 389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 100.0
3mvd_K 423 Regulator of chromosome condensation; protein-DNA 100.0
3of7_A473 Regulator of chromosome condensation; beta-propell 100.0
3of7_A 473 Regulator of chromosome condensation; beta-propell 100.0
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 100.0
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 100.0
3mvd_K423 Regulator of chromosome condensation; protein-DNA 100.0
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 100.0
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 100.0
4gbf_A400 Phikz131; 7-bladed beta-propeller, possibly partic 97.46
4gbf_A400 Phikz131; 7-bladed beta-propeller, possibly partic 95.99
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Back     alignment and structure
Probab=100.00  E-value=1.3e-41  Score=297.53  Aligned_cols=216  Identities=26%  Similarity=0.403  Sum_probs=174.4

Q ss_pred             CCCcEEEEeCCCCCCcCCCCccCCCcccCCeEeeccCCCcEEEEEeCCceeEEEEcCCcEEEeeCCCCCccCCCCCCCCc
Q 026784            1 MHLDIYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHTCALTSKGALYAWGGCQAGQLGLGPQTRSF   80 (233)
Q Consensus         1 ~~G~v~~wG~n~~GqLG~~~~~~~~~~~~p~~v~~l~~~~i~~is~G~~hs~~lt~~G~v~~wG~n~~GqlG~~~~~~~~   80 (233)
                      .+|+||+||.|.+||||.+..   .....|+++..+.+.+|++|+||.+|+++|+++|+||+||.|.+||||.+......
T Consensus       138 ~~G~v~~wG~n~~GqLG~g~~---~~~~~p~~v~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~  214 (406)
T 4d9s_A          138 MEGEVQSWGRNQNGQLGLGDT---EDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRL  214 (406)
T ss_dssp             TTSCEEEEECCTTSTTCSSSC---CCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEE
T ss_pred             CCCcEEEeCCCCCccCCCCCC---CCcccceEecccCCCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcC
Confidence            489999999999999999875   45678999999999899999999999999999999999999999999998766542


Q ss_pred             ccCCCCCCccccccCeee---cCCCeEEEecCCceEEEEEcCCcEEEeeCCCCCCCCCCCCCccccCeeccCCCC-CEEE
Q 026784           81 SFIPNESDTYFRNIPILV---VPNGVQLVACGHSHTLVYMRDGKIHGWGYNSYGQAANEKSTYAWYPSPVDWCVG-EVRK  156 (233)
Q Consensus        81 ~~~~~~~~~~~~~~p~~~---~~~~i~~i~~G~~hs~~L~~~G~v~~wG~n~~gqLg~~~~~~~~~p~~v~~~~~-~i~~  156 (233)
                                   .|..+   ...+|++|+||.+|+++|+++|+||+||.|.+||||+++......|++++.+.. +|++
T Consensus       215 -------------~p~~v~~~~~~~i~~va~G~~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~  281 (406)
T 4d9s_A          215 -------------VPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQ  281 (406)
T ss_dssp             -------------EEEECCCSTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEE
T ss_pred             -------------ccEEecccCCceEEEEEECCCcEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEE
Confidence                         22222   247899999999999999999999999999999999999988999999987665 7999


Q ss_pred             EeccCCceEEEEcCCCceeeEEeeeccccccCCC--cchhhhhhhcCcHHHHHHHHHHHHhh-hcCCccCCcccccCCC
Q 026784          157 LAAGGGHSAVLTDACSLKELCEFRLAESVTLSNA--SEIEDVASRTGSEALARLCERLREHL-LHGDEFDCDDDTRNGN  232 (233)
Q Consensus       157 i~~G~~hs~~l~~~g~v~~~g~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~cg~~~~~~-~~~~~~~~~~~~~~~~  232 (233)
                      |+||.+|++||+++|+||.||....++.+.-...  ..+..+..+....++++.|+..+..+ .+++++|+||.+++|.
T Consensus       282 i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~va~G~~hs~alt~~G~v~~wG~n~~Gq  360 (406)
T 4d9s_A          282 ISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQ  360 (406)
T ss_dssp             EEECSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCGGGCCEEEEEECSSEEEEEETTSCEEEEECCTTST
T ss_pred             EEecCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEeccCCCcEEEEEeCCCeEEEEeCCCCEEEecCCCCCc
Confidence            9999999999999999977665444433211111  11122222233346668888888777 4568899999998763
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} Back     alignment and structure
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 233
d1a12a_ 401 b.69.5.1 (A:) Regulator of chromosome condensation 4e-15
d1a12a_ 401 b.69.5.1 (A:) Regulator of chromosome condensation 9e-14
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 1e-13
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 3e-12
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 1e-08
d1a12a_ 401 b.69.5.1 (A:) Regulator of chromosome condensation 9e-06
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 8e-06
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 3e-05
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 1e-04
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.4 bits (173), Expect = 4e-15
 Identities = 25/102 (24%), Positives = 35/102 (34%), Gaps = 13/102 (12%)

Query: 50  HTCALTSKGALYAWGGCQAGQLGLGPQTRSFSFIPNESDTYFRNIPILV-VPNGVQLVAC 108
           H    T  G +   G    GQLGLG             +   R  P LV +P  V     
Sbjct: 7   HRSHSTEPGLVLTLGQGDVGQLGLG------------ENVMERKKPALVSIPEDVVQAEA 54

Query: 109 GHSHTLVYMRDGKIHGWGYNSYGQAANEKSTYAWYPSPVDWC 150
           G  HT+   + G+++ +G N  G    + S       P    
Sbjct: 55  GGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVE 96
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query233
d1a12a_ 401 Regulator of chromosome condensation RCC1 {Human ( 100.0
d1a12a_401 Regulator of chromosome condensation RCC1 {Human ( 99.97
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 99.95
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 99.94
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 86.93
d1k3ia3 387 Galactose oxidase, central domain {Fungi (Fusarium 82.86
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-32  Score=233.89  Aligned_cols=165  Identities=25%  Similarity=0.269  Sum_probs=131.7

Q ss_pred             CCCcEEEEeCCCCCCcCCCCccCCCcccCCeEeeccCCCcEEEEEeCCceeEEEEcCCcEEEeeCCCCCccCCCCCCCCc
Q 026784            1 MHLDIYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHTCALTSKGALYAWGGCQAGQLGLGPQTRSF   80 (233)
Q Consensus         1 ~~G~v~~wG~n~~GqLG~~~~~~~~~~~~p~~v~~l~~~~i~~is~G~~hs~~lt~~G~v~~wG~n~~GqlG~~~~~~~~   80 (233)
                      .+|+||+||.|.+||||++...  .....|.+|+.+.  +|++|+||..|++||+++|+||+||.|.+||||.+......
T Consensus        13 ~~G~vy~wG~n~~GqLG~g~~~--~~~~~P~~v~~~~--~i~~ia~G~~h~~al~~~G~vy~wG~n~~GQLG~g~~~~~~   88 (401)
T d1a12a_          13 EPGLVLTLGQGDVGQLGLGENV--MERKKPALVSIPE--DVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGS   88 (401)
T ss_dssp             CCBEEEEEEECTTSTTCSCTTC--CEEEEEEEECCSS--CEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCCCSTTG
T ss_pred             CCCEEEEEeCCCCCCCCCCCCC--ceeccCEEeCCCC--CeEEEEeCCCEEEEEeCCCEEEEEeCCCCCCCCcccccccc
Confidence            4899999999999999998653  4577888988766  49999999999999999999999999999999998776552


Q ss_pred             ccCCCCCCccccccCeee-cCCCeEEEecCCceEEEEEcCCcEEEeeCCCCCCCCCCCC--CccccCeeccCCCCCEEEE
Q 026784           81 SFIPNESDTYFRNIPILV-VPNGVQLVACGHSHTLVYMRDGKIHGWGYNSYGQAANEKS--TYAWYPSPVDWCVGEVRKL  157 (233)
Q Consensus        81 ~~~~~~~~~~~~~~p~~~-~~~~i~~i~~G~~hs~~L~~~G~v~~wG~n~~gqLg~~~~--~~~~~p~~v~~~~~~i~~i  157 (233)
                      .           ..|... ...+|++|+||..|+++++++|+||+||.+..++++....  .....+........+|++|
T Consensus        89 ~-----------~~~~~~~~~~~i~~i~~g~~~~~~~~~~g~v~~wG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i  157 (401)
T d1a12a_          89 E-----------MVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKV  157 (401)
T ss_dssp             G-----------GSCEECCCCSCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEECCSSCEEEE
T ss_pred             c-----------ccccccccccceeeecccccceeeccccccceeccccccccccccccCCccccceeeeeccCCceeEE
Confidence            2           223222 3578999999999999999999999999887666554433  2222223333334489999


Q ss_pred             eccCCceEEEEcCCCceeeEEee
Q 026784          158 AAGGGHSAVLTDACSLKELCEFR  180 (233)
Q Consensus       158 ~~G~~hs~~l~~~g~v~~~g~~g  180 (233)
                      +||..|+++++++|++|.|+...
T Consensus       158 ~~g~~~~~~~~~~g~~~~~G~n~  180 (401)
T d1a12a_         158 ASGNDHLVMLTADGDLYTLGCGE  180 (401)
T ss_dssp             EECSSEEEEEETTSCEEEEECCT
T ss_pred             EecccceeeeecCCcccccccCC
Confidence            99999999999999997666533
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure