Citrus Sinensis ID: 026807

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230---
Protein Sequence
MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQYADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFESPLLRKLWFIPSSNEKGKTLCRDPEVLDISAHEVFPRLFKEKLSNS
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccHHHcHHHHHHHHHHHHHHHHHHHHccccccEEEEEcccccccccccccEEcccccccccccHHHHHHHHHHHHHHHHHccEEEccccccccccccccccccccccccccccEEEEEccccccEEEEEcccccccccccccccccccccccccHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEccccccccccccEEEHHHHcccccHcHHHHHHHHHHHHHHHHHHEEEEcccccEEcccEEcccccccccccccccEEEEEccHHHcEEEEEEccccccccccccccEccccHHHHcHHHHHHccccc
Coil and Loop (DISEMBL)
MEQYDDALSAFQTALqynpqsaeVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKsemsekygaeECWKHVFSFVVETMETAVKSWHETSKVDAKVYFLLdkektdtekyapivnvdkafesphthgscfQFLRQYAddsfssaaclvapksiisypqvwrgqglrkwrhsqqdgffvqfespllrklwfipssnekgktlcrdpevldisaheVFPRLFKEKLSNS
Flexible Loop (DISEMBL)
MEQYDDALSAFQTAlqynpqsaevsrKIKRVSqlakdkkraqevenirsnvdmvQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKswhetskvdaKVYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQYADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFESPLLRKLWFIPSSNEKGKTLCRDPEVLDisahevfprlfkeklsns
Low Complexity Region (SEG)
MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQYADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFESPLLRKLWFIPSSNEKGKTLCRDPEVLDISAHEVFPRLFKEKLSNS
Disordered region (IsUnstruct)
******************************************************************KYGAEECWKHVFSFVVETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQYADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFESPLLRKLWFIPSSNEKGKTLCRDPEVLDISAHEVFPRL********
Disordered Region (DISOPRED)
******ALSAFQTAL********************************************************ECWKHVFSFVVETMETAVKSWHETSKVDAKVYFL****************VDKAFESPHTHGSCFQFLRQYADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFESPLLRKLWFIPSSNEKGKTLCRDPEVLDISAHEVFPRL*K******
Disordered Region (DISEMBL)
MEQYDDALSAFQTALQY*************************EVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQYADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFESPLLRKLWFIPSSNEKGKTLCRDPEVLDISAHEVFPRLFKEKLSNS
Disordered Region (DISPRO)
*EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQYADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFESPLLRKLWFIPSSNEKGKTLCRDPEVLDISAHEVFPRLFKEK****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQYADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFESPLLRKLWFIPSSNEKGKTLCRDPEVLDISAHEVFPRLFKEKLSNS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	233
255552073	330	heat shock protein 70 (HSP70)-interactin	1.0	0.706	0.806	1e-112
356537369	325	PREDICTED: RNA polymerase II-associated	1.0	0.716	0.789	1e-111
449455294	331	PREDICTED: RNA polymerase II-associated	0.987	0.694	0.8	1e-111
359806614	324	uncharacterized protein LOC100790717 [Gl	0.982	0.706	0.803	1e-111
224099829	334	predicted protein [Populus trichocarpa]	0.995	0.694	0.784	1e-110
224111122	334	predicted protein [Populus trichocarpa]	0.995	0.694	0.771	1e-108
449516834	338	PREDICTED: LOW QUALITY PROTEIN: RNA poly	0.987	0.680	0.772	1e-108
297737096	329	unnamed protein product [Vitis vinifera]	0.995	0.705	0.754	1e-105
225432762	330	PREDICTED: serine/threonine-protein phos	0.995	0.703	0.754	1e-105
388496878	324	unknown [Medicago truncatula]	1.0	0.719	0.751	1e-103

>gi|255552073|ref|XP_002517081.1| heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis] gi|223543716|gb|EEF45244.1| heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis]

 Score =  408 bits (1049), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 188/233 (80%), Positives = 213/233 (91%)

Query: 1   MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEF 60
           ME+YDDA +AFQTAL+YNPQS+EVSRKIKR+SQLAK+KKRAQEVE++RSNVD+ +H D+ 
Sbjct: 98  MERYDDASAAFQTALKYNPQSSEVSRKIKRISQLAKEKKRAQEVESMRSNVDLAKHFDKL 157

Query: 61  KSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIV 120
           KSEMSEK G+EEC K +FSF+VETME AVKSWHETSKVD +VYFLLDKEKT ++KYAP V
Sbjct: 158 KSEMSEKIGSEECLKEIFSFLVETMEMAVKSWHETSKVDPRVYFLLDKEKTQSDKYAPAV 217

Query: 121 NVDKAFESPHTHGSCFQFLRQYADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQD 180
           N+DKAFESPHTH SCF FLRQYA++SFS AACLVAPKSIISYPQVW+GQG RKW+H Q D
Sbjct: 218 NIDKAFESPHTHSSCFTFLRQYAEESFSKAACLVAPKSIISYPQVWKGQGSRKWKHGQHD 277

Query: 181 GFFVQFESPLLRKLWFIPSSNEKGKTLCRDPEVLDISAHEVFPRLFKEKLSNS 233
           GFFVQFESP LRKLWFI S+NEKG+TLCRDPE+LDISAHEVFPRLFKEKL NS
Sbjct: 278 GFFVQFESPCLRKLWFISSTNEKGQTLCRDPEMLDISAHEVFPRLFKEKLPNS 330

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356537369|ref|XP_003537200.1| PREDICTED: RNA polymerase II-associated protein 3-like [Glycine max]

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 184/233 (78%), Positives = 211/233 (90%)

Query: 1   MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEF 60
           M++YDDAL+AFQ ALQYNPQS EV++KIK+++QL KD KRAQEVEN+RSNVDM +HLD F
Sbjct: 93  MKRYDDALAAFQIALQYNPQSQEVTKKIKKINQLMKDSKRAQEVENMRSNVDMAKHLDTF 152

Query: 61  KSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIV 120
           K+EMS KYG EE WK +FSF+VETMETAVKSWHETS VDA+VYFLLDKEKTDT+KYAP+V
Sbjct: 153 KTEMSGKYGLEEGWKDLFSFLVETMETAVKSWHETSSVDARVYFLLDKEKTDTDKYAPVV 212

Query: 121 NVDKAFESPHTHGSCFQFLRQYADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQD 180
           N+DKAFESPHTHG+CF FLRQYA++SFS AACLV PK+II+YPQVW+GQG RKW+H+Q D
Sbjct: 213 NIDKAFESPHTHGNCFAFLRQYAEESFSKAACLVTPKNIIAYPQVWKGQGPRKWKHAQSD 272

Query: 181 GFFVQFESPLLRKLWFIPSSNEKGKTLCRDPEVLDISAHEVFPRLFKEKLSNS 233
           GFFVQFESP LRKLWFIPSSNEKG+TLCRDPEVLDI AHEV PRL KE L +S
Sbjct: 273 GFFVQFESPSLRKLWFIPSSNEKGQTLCRDPEVLDIGAHEVLPRLLKENLPHS 325

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455294|ref|XP_004145388.1| PREDICTED: RNA polymerase II-associated protein 3-like [Cucumis sativus]

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 184/230 (80%), Positives = 208/230 (90%)

Query: 1   MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEF 60
           ME+YDDALSAFQTALQYNPQSAEVSRKIKRVSQL KDKKRAQEVE  RSN+DM +HLD+ 
Sbjct: 99  MEKYDDALSAFQTALQYNPQSAEVSRKIKRVSQLVKDKKRAQEVEKKRSNIDMTKHLDKL 158

Query: 61  KSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIV 120
           KSE+SEKYG+EECWK +FSF+VETME AV+SWHETS VDAKVY+LLD EKTDTEKYAP+V
Sbjct: 159 KSELSEKYGSEECWKDIFSFLVETMEAAVRSWHETSNVDAKVYYLLDNEKTDTEKYAPVV 218

Query: 121 NVDKAFESPHTHGSCFQFLRQYADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQD 180
           N+DKAFESPHTH  CFQFLR+YA+DS S AACLV PKS+ISYPQVW+GQG RKW+H Q D
Sbjct: 219 NIDKAFESPHTHSDCFQFLRKYAEDSVSRAACLVTPKSLISYPQVWKGQGSRKWKHGQHD 278

Query: 181 GFFVQFESPLLRKLWFIPSSNEKGKTLCRDPEVLDISAHEVFPRLFKEKL 230
           GFFVQ E+P LRKLWF+PSS+E G+ LCRDPEVLDI+AHE+ PR+FKEKL
Sbjct: 279 GFFVQLETPSLRKLWFVPSSSELGRPLCRDPEVLDIAAHELLPRIFKEKL 328

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806614|ref|NP_001241273.1| uncharacterized protein LOC100790717 [Glycine max] gi|255644906|gb|ACU22953.1| unknown [Glycine max]

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 184/229 (80%), Positives = 210/229 (91%)

Query: 1   MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEF 60
           M++YDDAL++FQ ALQYNPQS EVS+KIK+++QL KD KRAQEVEN+RSNVDM +HLD F
Sbjct: 92  MKRYDDALASFQIALQYNPQSQEVSKKIKKINQLVKDSKRAQEVENMRSNVDMAKHLDTF 151

Query: 61  KSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIV 120
           K+EMS KYG+EEC K +FSF+VETMETAVKSWHETS VDAKVYFLLDKEKTDT+KYAP+V
Sbjct: 152 KTEMSGKYGSEECLKDLFSFLVETMETAVKSWHETSSVDAKVYFLLDKEKTDTDKYAPVV 211

Query: 121 NVDKAFESPHTHGSCFQFLRQYADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQD 180
           N+DKAFESPHTHG+CF FLRQYA++SFS AACLV PK+II+YPQVW+GQG RKW+H+Q D
Sbjct: 212 NIDKAFESPHTHGNCFAFLRQYAEESFSKAACLVTPKNIIAYPQVWKGQGSRKWKHAQSD 271

Query: 181 GFFVQFESPLLRKLWFIPSSNEKGKTLCRDPEVLDISAHEVFPRLFKEK 229
           GFFVQFESP LRKLWFIPSSNEKG+T CRDPEVLDI AHEV PRLFKEK
Sbjct: 272 GFFVQFESPSLRKLWFIPSSNEKGQTWCRDPEVLDIGAHEVLPRLFKEK 320

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099829|ref|XP_002311636.1| predicted protein [Populus trichocarpa] gi|222851456|gb|EEE89003.1| predicted protein [Populus trichocarpa]

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 182/232 (78%), Positives = 210/232 (90%)

Query: 1   MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEF 60
           MEQYD+AL+ FQ ALQYNP+S EVSRKIKR+SQLAKDKKRAQEVE++RSNV+M +HL+  
Sbjct: 102 MEQYDNALATFQIALQYNPRSTEVSRKIKRISQLAKDKKRAQEVESMRSNVNMEKHLETL 161

Query: 61  KSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIV 120
           KSEMSE  G+EEC+K +FSF+VETMETAVKSWHE SKVD +VYFLLDKEKT T+KYAP+V
Sbjct: 162 KSEMSEMLGSEECFKEMFSFLVETMETAVKSWHEASKVDPRVYFLLDKEKTLTDKYAPVV 221

Query: 121 NVDKAFESPHTHGSCFQFLRQYADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQD 180
           N+DKAFESPHTHG+CF FLRQYA+DSFS AAC+V PK+IISYPQVW+GQG RKWRH Q D
Sbjct: 222 NIDKAFESPHTHGNCFSFLRQYAEDSFSKAACVVVPKNIISYPQVWKGQGSRKWRHGQHD 281

Query: 181 GFFVQFESPLLRKLWFIPSSNEKGKTLCRDPEVLDISAHEVFPRLFKEKLSN 232
           G FVQ+ESPL+RK+WFI SSNEKG+TLCRDPE+LDISAHEV PRLFKEK+ N
Sbjct: 282 GIFVQYESPLMRKIWFIASSNEKGQTLCRDPEILDISAHEVLPRLFKEKMPN 333

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111122|ref|XP_002315755.1| predicted protein [Populus trichocarpa] gi|222864795|gb|EEF01926.1| predicted protein [Populus trichocarpa]

 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 179/232 (77%), Positives = 209/232 (90%)

Query: 1   MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEF 60
           ME+YDDAL+ FQ ALQ+NPQS EVSRKIKR+SQLA+DKKRAQEV+++RSNVDM +HL+  
Sbjct: 102 MERYDDALATFQIALQHNPQSTEVSRKIKRISQLARDKKRAQEVQSMRSNVDMAKHLETL 161

Query: 61  KSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIV 120
           KSEM EK G+EEC+K +FSF+VETMETAVKSWHE SKVD +VYFLLDKEKT T+KYAP+V
Sbjct: 162 KSEMFEKLGSEECFKDMFSFLVETMETAVKSWHEASKVDPRVYFLLDKEKTQTDKYAPVV 221

Query: 121 NVDKAFESPHTHGSCFQFLRQYADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQD 180
           N+DKAFESPH+H +CF FLRQYADDSFS AACLV PK+IISYPQVW+GQG RKW++ Q D
Sbjct: 222 NIDKAFESPHSHSNCFSFLRQYADDSFSKAACLVVPKNIISYPQVWKGQGSRKWKYGQHD 281

Query: 181 GFFVQFESPLLRKLWFIPSSNEKGKTLCRDPEVLDISAHEVFPRLFKEKLSN 232
           GFFVQ+ES L+RK+WFI S+NEKG+TLCRDPEVLDI AHEV PRLFKEKL+N
Sbjct: 282 GFFVQYESHLMRKIWFIASTNEKGQTLCRDPEVLDIGAHEVLPRLFKEKLTN 333

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449516834|ref|XP_004165451.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymerase II-associated protein 3-like [Cucumis sativus]

 Score =  395 bits (1015), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 183/237 (77%), Positives = 207/237 (87%), Gaps = 7/237 (2%)

Query: 1   MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEF 60
           ME+YDDALSAFQTALQYNPQSAEVSRKIKRVSQL KDKKRAQEVE  RSN+DM +HLD+ 
Sbjct: 99  MEKYDDALSAFQTALQYNPQSAEVSRKIKRVSQLVKDKKRAQEVEKKRSNIDMTKHLDKL 158

Query: 61  KSEMSE-------KYGAEECWKHVFSFVVETMETAVKSWHETSKVDAKVYFLLDKEKTDT 113
           KSE+S        KYG+EECWK +FSF+VETME AV+S HETS VDAKVY+LLDKEKTDT
Sbjct: 159 KSELSHSLSIAVXKYGSEECWKDIFSFLVETMEAAVRSXHETSNVDAKVYYLLDKEKTDT 218

Query: 114 EKYAPIVNVDKAFESPHTHGSCFQFLRQYADDSFSSAACLVAPKSIISYPQVWRGQGLRK 173
           EKYAP+VN+DKAFESPHTH  CFQFLR+YA+DS S AACLV PKS+ISYPQVW+GQG RK
Sbjct: 219 EKYAPVVNIDKAFESPHTHSDCFQFLRKYAEDSVSRAACLVTPKSLISYPQVWKGQGSRK 278

Query: 174 WRHSQQDGFFVQFESPLLRKLWFIPSSNEKGKTLCRDPEVLDISAHEVFPRLFKEKL 230
           W+H Q DGFFVQ E+P LRKLWF+PSS+E G+ LCRDPEVLDI+AHE+ PR+FKEKL
Sbjct: 279 WKHGQHDGFFVQLETPSLRKLWFVPSSSELGRPLCRDPEVLDIAAHELLPRIFKEKL 335

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737096|emb|CBI26297.3| unnamed protein product [Vitis vinifera]

 Score =  385 bits (989), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 175/232 (75%), Positives = 205/232 (88%)

Query: 1   MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEF 60
           ME+YDD+L AF+ AL++NPQS+EVSRKIK+++QLA+DKKR QEVEN RSNVDM +HL+  
Sbjct: 97  MERYDDSLVAFRIALEHNPQSSEVSRKIKKLTQLARDKKRVQEVENKRSNVDMAKHLETL 156

Query: 61  KSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIV 120
           KSE+SEKYG  E WK +FSF VET+ETA+KSWHETSKVDA+VYFLLDKEKT T+KYAP+V
Sbjct: 157 KSELSEKYGDAEHWKSMFSFTVETIETAIKSWHETSKVDARVYFLLDKEKTQTDKYAPVV 216

Query: 121 NVDKAFESPHTHGSCFQFLRQYADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQD 180
           N+DKAFESPHTH SCF FLR YA++SFS AACLVAPKSIISYPQVW+GQG RKW+H Q D
Sbjct: 217 NIDKAFESPHTHKSCFTFLRDYAEESFSKAACLVAPKSIISYPQVWKGQGSRKWKHGQSD 276

Query: 181 GFFVQFESPLLRKLWFIPSSNEKGKTLCRDPEVLDISAHEVFPRLFKEKLSN 232
           GFFVQFESP L+KLWF+PSS EKG+ LCRDPEVLDI  HE+ PR+FK+KL N
Sbjct: 277 GFFVQFESPSLQKLWFVPSSTEKGQLLCRDPEVLDIGVHELLPRIFKQKLPN 328

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432762|ref|XP_002283155.1| PREDICTED: serine/threonine-protein phosphatase 5-like [Vitis vinifera]

 Score =  385 bits (989), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 175/232 (75%), Positives = 205/232 (88%)

Query: 1   MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEF 60
           ME+YDD+L AF+ AL++NPQS+EVSRKIK+++QLA+DKKR QEVEN RSNVDM +HL+  
Sbjct: 98  MERYDDSLVAFRIALEHNPQSSEVSRKIKKLTQLARDKKRVQEVENKRSNVDMAKHLETL 157

Query: 61  KSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIV 120
           KSE+SEKYG  E WK +FSF VET+ETA+KSWHETSKVDA+VYFLLDKEKT T+KYAP+V
Sbjct: 158 KSELSEKYGDAEHWKSMFSFTVETIETAIKSWHETSKVDARVYFLLDKEKTQTDKYAPVV 217

Query: 121 NVDKAFESPHTHGSCFQFLRQYADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQD 180
           N+DKAFESPHTH SCF FLR YA++SFS AACLVAPKSIISYPQVW+GQG RKW+H Q D
Sbjct: 218 NIDKAFESPHTHKSCFTFLRDYAEESFSKAACLVAPKSIISYPQVWKGQGSRKWKHGQSD 277

Query: 181 GFFVQFESPLLRKLWFIPSSNEKGKTLCRDPEVLDISAHEVFPRLFKEKLSN 232
           GFFVQFESP L+KLWF+PSS EKG+ LCRDPEVLDI  HE+ PR+FK+KL N
Sbjct: 278 GFFVQFESPSLQKLWFVPSSTEKGQLLCRDPEVLDIGVHELLPRIFKQKLPN 329

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388496878|gb|AFK36505.1| unknown [Medicago truncatula]

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 175/233 (75%), Positives = 202/233 (86%)

Query: 1   MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEF 60
           M++YDDAL++FQ A QYNPQS EV ++IK+++QL KD KRAQEVEN+RSNVDM +HLD  
Sbjct: 92  MKRYDDALASFQIASQYNPQSQEVLKRIKKINQLVKDSKRAQEVENMRSNVDMAKHLDTL 151

Query: 61  KSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIV 120
           K EMSEKYG+EE WK +FSF+VETMETAVKSWHETS VDA+VYFL DKEKT T+KY PIV
Sbjct: 152 KPEMSEKYGSEESWKDMFSFLVETMETAVKSWHETSSVDARVYFLHDKEKTQTDKYPPIV 211

Query: 121 NVDKAFESPHTHGSCFQFLRQYADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQD 180
           N+DKAFESP TH SCF F RQYA++SFS AACLVA K+II YPQVW+GQG RKW+H+Q D
Sbjct: 212 NIDKAFESPETHSSCFPFFRQYAEESFSRAACLVAAKNIIFYPQVWKGQGSRKWKHAQND 271

Query: 181 GFFVQFESPLLRKLWFIPSSNEKGKTLCRDPEVLDISAHEVFPRLFKEKLSNS 233
           GFFVQFESP +RKLWFIPSSNEKG+ LCRDPE+LD+ AHEV PRLFKEK S S
Sbjct: 272 GFFVQFESPSVRKLWFIPSSNEKGQILCRDPEILDVGAHEVVPRLFKEKTSQS 324

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	233
TAIR|locus:2020240	328	TPR3 "tetratricopeptide repeat	1.0	0.710	0.729	4.2e-95

TAIR|locus:2020240 TPR3 "tetratricopeptide repeat 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 946 (338.1 bits), Expect = 4.2e-95, P = 4.2e-95
 Identities = 170/233 (72%), Positives = 200/233 (85%)

Query:     1 MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEF 60
             ME+Y+DAL+AF+ ALQYNPQS EVSRKIKR+ QL K+K+RAQE+EN+RSNVDM +HL+ F
Sbjct:    96 MEKYEDALAAFEMALQYNPQSTEVSRKIKRLGQLQKEKQRAQELENLRSNVDMAKHLESF 155

Query:    61 KSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIV 120
             KSEMSE YG EECWK +FSF+VETMETAVKSWHETSKVD +VYFLLDKEKT T+KYAP V
Sbjct:   156 KSEMSENYGTEECWKEMFSFIVETMETAVKSWHETSKVDTRVYFLLDKEKTQTDKYAPAV 215

Query:   121 NVDKAFESPHTHGSCFQFLRQYADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQD 180
             N+DKAF+SP TH +CF +LRQYA++SFS AACLV PKS ISYPQVW+G G RKW+    D
Sbjct:   216 NIDKAFQSPDTHSNCFTYLRQYAEESFSKAACLVTPKSSISYPQVWKGVGSRKWKLGPND 275

Query:   181 GFFVQFESPLLRKLWFIPSSNEKGKTLCRDPEVLDISAHEVFPRLFKEKLSNS 233
             G FVQFESP LRK+WFI SS EKG+TLCR+P+ LDI AHE+ PR+FKEK  +S
Sbjct:   276 GIFVQFESPSLRKVWFISSSKEKGQTLCREPQALDIGAHEILPRIFKEKSKSS 328


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.130   0.386    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      233       233   0.00086  113 3  11 22  0.42    33
                                                     32  0.43    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  606 (64 KB)
  Total size of DFA:  199 KB (2112 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  22.41u 0.16s 22.57t   Elapsed:  00:00:01
  Total cpu time:  22.41u 0.16s 22.57t   Elapsed:  00:00:01
  Start:  Sat May 11 06:28:27 2013   End:  Sat May 11 06:28:28 2013

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

GO:0006606 "protein import into nucleus" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010388 "cullin deneddylation" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	233
KOG2449	157	consensus Methylmalonate semialdehyde dehydrogenas	100.0
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	96.55
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	96.25
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	95.99
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	95.6
PF13428	44	TPR_14: Tetratricopeptide repeat	94.73
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	93.97
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	93.27
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	92.81
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	92.79
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	92.64
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	92.34
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	92.15
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	91.84
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	91.13
KOG4234	271	consensus TPR repeat-containing protein [General f	90.17
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	89.95
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	88.62
PF13371	73	TPR_9: Tetratricopeptide repeat	88.24
PRK15359	144	type III secretion system chaperone protein SscB;	86.94
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	86.6
TIGR02552	135	LcrH_SycD type III secretion low calcium response	86.27
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	86.06
KOG0553	304	consensus TPR repeat-containing protein [General f	85.02
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	84.87
PF13371	73	TPR_9: Tetratricopeptide repeat	84.73
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	84.5
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	83.99
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	83.72
PRK10370	198	formate-dependent nitrite reductase complex subuni	83.24
PRK15359	144	type III secretion system chaperone protein SscB;	82.77
TIGR02552	135	LcrH_SycD type III secretion low calcium response	82.19

>KOG2449 consensus Methylmalonate semialdehyde dehydrogenase [Amino acid transport and metabolism; Carbohydrate transport and metabolism]

Probab=100.00  E-value=3.6e-43  Score=292.54  Aligned_cols=148  Identities=27%  Similarity=0.388  Sum_probs=145.6

Q ss_pred             HHHHHHHhhhhccCCCCceEeeecCCCCccccccCceecccccccCCcchhhhHHHHHhhhhhhhhhhhhhc-ccccccc
Q 026807           83 ETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQYADDSFSSAACLV-APKSIIS  161 (233)
Q Consensus        83 e~~e~Avk~whe~~kvd~~V~FLld~~kt~tekyap~VnidkAFeSP~th~~Cf~fLRqYAeesfs~Aac~v-~pKsiIs  161 (233)
                      +||++++|+||++.++|++|||+++.++|+||+|+|-|+||++|+||.+|++|+.||||||+.+|++++|++ .|+..++
T Consensus         2 ~v~vg~aksW~~~lve~ak~l~v~~g~kp~tD~~a~~~ri~~liqS~~~~~~r~~yl~~ya~~~f~~~tiLsvtP~ms~y   81 (157)
T KOG2449|consen    2 AVMVGAAKSWHPTLVEDAKVLKVNAGEKPQTDKYAPKVRIDKLIQSEDPLDGRFIYLPGYAEGNFVGPTILSVTPNMSCY   81 (157)
T ss_pred             ceEechhhhhhHHHHHhhhheEeccCCCCCccchhHHHHHHHHhcCcCccCCceEEeeccccCCcccceEEEecCCccee
Confidence            689999999999999999999999999999999999999999999999999999999999999999999998 9999999


Q ss_pred             cccccccCcccccccCCCcceeEEeccccceeeeeeecccccccccccCccccccchhccchHHHhhhc
Q 026807          162 YPQVWRGQGLRKWRHSQQDGFFVQFESPLLRKLWFIPSSNEKGKTLCRDPEVLDISAHEVFPRLFKEKL  230 (233)
Q Consensus       162 YPQVWkgqGsRkWk~~q~dGfFVQ~Esp~lRk~WFips~~Ekg~tlcr~pe~ldi~~hev~pr~fke~~  230 (233)
                      |||+|+|.|+|+|+.+-.||+|||+++|.+|++||+.|+.++||++||+|+.+||++|+.+|++|++.-
T Consensus        82 keeI~gpVlv~l~~~tldd~I~Iin~nPygn~t~i~Tsn~atark~~~e~~a~qig~~~~ip~ilk~~s  150 (157)
T KOG2449|consen   82 KEEIFGPVLVRLETETLDDAIFIINNNPYGNGTAIFTSNGATARKFCHEPDAGQIGANVPIPVILKMFS  150 (157)
T ss_pred             HhhhhcceEEEEeecCCCceeEEEecCCCCceeEEEecCcHHhhhhhcCCCccceecccccccccccee
Confidence            999999999999999999999999999999999999999999999999999999999999999999863

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=96.55  E-value=0.0021  Score=63.10  Aligned_cols=35  Identities=37%  Similarity=0.618  Sum_probs=33.5

Q ss_pred             ChhhHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 026807            1 MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLA   35 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs~EvsrKIkrlsqL~   35 (233)
                      |.+|+.|+.+||.||++||+++|++.+|+|..+..
T Consensus       439 mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~  473 (539)
T KOG0548|consen  439 MKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ  473 (539)
T ss_pred             HHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence            78999999999999999999999999999999875

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.25  E-value=0.0042  Score=37.03  Aligned_cols=21  Identities=33%  Similarity=0.759  Sum_probs=18.3

Q ss_pred             ChhhHHHHHHHHHHHhhCCCc
Q 026807            1 MEQYDDALSAFQTALQYNPQS   21 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs   21 (233)
                      |.+|++|+..|+.||++||++
T Consensus        14 ~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen   14 LGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             TT-HHHHHHHHHHHHHHSTTH
T ss_pred             hCCchHHHHHHHHHHHHCcCC
Confidence            578999999999999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=95.99  E-value=0.051  Score=35.75  Aligned_cols=30  Identities=30%  Similarity=0.514  Sum_probs=26.0

Q ss_pred             ChhhHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 026807            1 MEQYDDALSAFQTALQYNPQSAEVSRKIKR   30 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs~EvsrKIkr   30 (233)
                      ..+|++|+..|+.+++.+|++.++...+-+
T Consensus         4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~   33 (68)
T PF14559_consen    4 QGDYDEAIELLEKALQRNPDNPEARLLLAQ   33 (68)
T ss_dssp             TTHHHHHHHHHHHHHHHTTTSHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence            368999999999999999999999875443

...

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=95.60  E-value=0.014  Score=34.18  Aligned_cols=21  Identities=29%  Similarity=0.752  Sum_probs=18.3

Q ss_pred             ChhhHHHHHHHHHHHhhCCCc
Q 026807            1 MEQYDDALSAFQTALQYNPQS   21 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs   21 (233)
                      +.+|++|+..|+.|++++|++
T Consensus        14 ~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen   14 LGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             TT-HHHHHHHHHHHHHHSTTS
T ss_pred             hCCHHHHHHHHHHHHHHCcCC
Confidence            468999999999999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=94.73  E-value=0.046  Score=35.03  Aligned_cols=27  Identities=30%  Similarity=0.407  Sum_probs=23.8

Q ss_pred             ChhhHHHHHHHHHHHhhCCCcHHHHHH
Q 026807            1 MEQYDDALSAFQTALQYNPQSAEVSRK   27 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs~EvsrK   27 (233)
                      +.++|+|+..|+.+++.+|++.++-..
T Consensus        14 ~G~~~~A~~~~~~~l~~~P~~~~a~~~   40 (44)
T PF13428_consen   14 LGQPDEAERLLRRALALDPDDPEAWRA   40 (44)
T ss_pred             cCCHHHHHHHHHHHHHHCcCCHHHHHH
Confidence            358999999999999999999987654

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=93.97  E-value=0.18  Score=33.35  Aligned_cols=29  Identities=24%  Similarity=0.547  Sum_probs=24.5

Q ss_pred             ChhhHHHHHHHHHHHhhCCCcHHHHHHHH
Q 026807            1 MEQYDDALSAFQTALQYNPQSAEVSRKIK   29 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs~EvsrKIk   29 (233)
                      +.+|++|+..|..|+++||.+.++--.+-
T Consensus        16 ~~~~~~A~~~~~~ai~~~p~~~~~~~~~g   44 (69)
T PF13414_consen   16 QGDYEEAIEYFEKAIELDPNNAEAYYNLG   44 (69)
T ss_dssp             TTHHHHHHHHHHHHHHHSTTHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            46899999999999999999988654443

...

>smart00028 TPR Tetratricopeptide repeats

Probab=93.27  E-value=0.08  Score=27.33  Aligned_cols=21  Identities=33%  Similarity=0.776  Sum_probs=18.4

Q ss_pred             ChhhHHHHHHHHHHHhhCCCc
Q 026807            1 MEQYDDALSAFQTALQYNPQS   21 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs   21 (233)
                      |.+|++|+..|+.+++.+|.+
T Consensus        14 ~~~~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028       14 LGDYDEALEYYEKALELDPNN   34 (34)
T ss_pred             HhhHHHHHHHHHHHHccCCCC
Confidence            578999999999999998863

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=92.81  E-value=0.28  Score=32.29  Aligned_cols=32  Identities=31%  Similarity=0.553  Sum_probs=26.4

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQ   33 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~EvsrKIkrlsq   33 (233)
                      .+|++|+..|+.+++.+|.+.++-.-+-++-.
T Consensus        11 g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~   42 (65)
T PF13432_consen   11 GDYDEAIAAFEQALKQDPDNPEAWYLLGRILY   42 (65)
T ss_dssp             THHHHHHHHHHHHHCCSTTHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            57999999999999999999888765544433

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=92.79  E-value=0.19  Score=48.15  Aligned_cols=38  Identities=24%  Similarity=0.426  Sum_probs=32.9

Q ss_pred             ChhhHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHH
Q 026807            1 MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDK   38 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs~EvsrKIkrlsqL~k~k   38 (233)
                      |-.||+|+..||.|++++|.|.++..-|++|.|=+|+.
T Consensus       304 ~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~  341 (397)
T KOG0543|consen  304 LGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREY  341 (397)
T ss_pred             hccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence            34699999999999999999999999998887765543

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=92.64  E-value=0.65  Score=31.48  Aligned_cols=43  Identities=16%  Similarity=0.336  Sum_probs=32.0

Q ss_pred             ChhhHHHHHHHHHHHhh----CCCcHHHHHHHHHHHHHHHHHHHHHH
Q 026807            1 MEQYDDALSAFQTALQY----NPQSAEVSRKIKRVSQLAKDKKRAQE   43 (233)
Q Consensus         1 me~y~dAlaafq~Alq~----npqs~EvsrKIkrlsqL~k~kkra~e   43 (233)
                      +.+|++|+..|+.|++.    .+.+.+++.-+-.|+.+.....+..+
T Consensus        18 ~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~   64 (78)
T PF13424_consen   18 LGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEE   64 (78)
T ss_dssp             TT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHH
Confidence            46899999999999965    34555677777778777777766665

...

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=92.34  E-value=0.11  Score=30.60  Aligned_cols=20  Identities=40%  Similarity=0.828  Sum_probs=18.1

Q ss_pred             ChhhHHHHHHHHHHHhhCCC
Q 026807            1 MEQYDDALSAFQTALQYNPQ   20 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npq   20 (233)
                      +.+|++|+..|+.|++++|.
T Consensus        14 ~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen   14 LGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             TTSHHHHHHHHHHHHHHHTT
T ss_pred             cCCHHHHHHHHHHHHhhCCC
Confidence            46899999999999999994

...

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=92.15  E-value=0.16  Score=33.46  Aligned_cols=22  Identities=32%  Similarity=0.709  Sum_probs=18.2

Q ss_pred             ChhhHHHHHHHHHHHhhCCCcH
Q 026807            1 MEQYDDALSAFQTALQYNPQSA   22 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs~   22 (233)
                      +.+|++|+..|+.+++.+|.+.
T Consensus        44 ~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen   44 QGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             TT-HHHHHHHHHHHHHHSTT-H
T ss_pred             cCCHHHHHHHHHHHHHHCcCCC
Confidence            4689999999999999999874

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=91.84  E-value=1.8  Score=26.17  Aligned_cols=27  Identities=30%  Similarity=0.635  Sum_probs=22.1

Q ss_pred             ChhhHHHHHHHHHHHhhCCCcHHHHHH
Q 026807            1 MEQYDDALSAFQTALQYNPQSAEVSRK   27 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs~EvsrK   27 (233)
                      +.+|++|+..|+.+++.+|.+..+-..
T Consensus        13 ~~~~~~A~~~~~~~~~~~~~~~~~~~~   39 (100)
T cd00189          13 LGDYDEALEYYEKALELDPDNADAYYN   39 (100)
T ss_pred             HhcHHHHHHHHHHHHhcCCccHHHHHH
Confidence            367999999999999999998755433

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=91.13  E-value=1.3  Score=26.87  Aligned_cols=40  Identities=20%  Similarity=0.348  Sum_probs=27.8

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRA   41 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~EvsrKIkrlsqL~k~kkra   41 (233)
                      ++|++|+..|+.+++.+|.+.++-..+-.+-....+-..+
T Consensus        48 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a   87 (100)
T cd00189          48 GKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEA   87 (100)
T ss_pred             HHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHH
Confidence            5789999999999999999886655444444433333333

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=90.17  E-value=0.74  Score=42.40  Aligned_cols=39  Identities=26%  Similarity=0.562  Sum_probs=36.1

Q ss_pred             ChhhHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHH
Q 026807            1 MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKK   39 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs~EvsrKIkrlsqL~k~kk   39 (233)
                      ||+||+||.-|...|+..|-..|.-++|.||..++.++.
T Consensus       181 ~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ern  219 (271)
T KOG4234|consen  181 MEKYEEALEDYKKILESDPSRREAREAIARLPPKINERN  219 (271)
T ss_pred             hhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHH
Confidence            789999999999999999999999999999998887654

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=89.95  E-value=3.2  Score=32.56  Aligned_cols=36  Identities=17%  Similarity=0.318  Sum_probs=25.3

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKD   37 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~EvsrKIkrlsqL~k~   37 (233)
                      .+|++|+..|+.|++.+|...+.+.-.-.|..+...
T Consensus        49 g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~   84 (172)
T PRK02603         49 GEYAEALENYEEALKLEEDPNDRSYILYNMGIIYAS   84 (172)
T ss_pred             CCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH
Confidence            579999999999999888765544444455555543

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=88.62  E-value=0.83  Score=41.02  Aligned_cols=24  Identities=17%  Similarity=0.387  Sum_probs=16.1

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEVS   25 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~Evs   25 (233)
                      .+|++|+..|+.|+++||.+.+.-
T Consensus        50 g~~~eAl~~~~~Al~l~P~~~~a~   73 (356)
T PLN03088         50 GNFTEAVADANKAIELDPSLAKAY   73 (356)
T ss_pred             CCHHHHHHHHHHHHHhCcCCHHHH
Confidence            466777777777777777666653

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=88.24  E-value=0.78  Score=30.47  Aligned_cols=23  Identities=35%  Similarity=0.767  Sum_probs=16.2

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEV   24 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~Ev   24 (233)
                      ++|++|+.+++.+++.+|.+...
T Consensus         9 ~~~~~A~~~~~~~l~~~p~~~~~   31 (73)
T PF13371_consen    9 EDYEEALEVLERALELDPDDPEL   31 (73)
T ss_pred             CCHHHHHHHHHHHHHhCcccchh
Confidence            46777777777777777776654

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=86.94  E-value=2.2  Score=33.32  Aligned_cols=34  Identities=15%  Similarity=0.109  Sum_probs=25.9

Q ss_pred             ChhhHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 026807            1 MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQL   34 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs~EvsrKIkrlsqL   34 (233)
                      +.+|++|+..|+.|++.||.+.++-...-.+-+.
T Consensus        37 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~   70 (144)
T PRK15359         37 EGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMM   70 (144)
T ss_pred             cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence            3589999999999999999998886554443333

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=86.60  E-value=0.57  Score=26.87  Aligned_cols=20  Identities=35%  Similarity=0.644  Sum_probs=18.3

Q ss_pred             hhhHHHHHHHHHHHhhCCCc
Q 026807            2 EQYDDALSAFQTALQYNPQS   21 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs   21 (233)
                      .++++|+..|+..+...|+|
T Consensus        14 g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen   14 GDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             CHHHHHHHHHHHHHHHSTTS
T ss_pred             cCHHHHHHHHHHHHHHCcCC
Confidence            47999999999999999986

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=86.27  E-value=8.7  Score=27.85  Aligned_cols=28  Identities=29%  Similarity=0.477  Sum_probs=23.8

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHHHHHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEVSRKIK   29 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~EvsrKIk   29 (233)
                      .+|++|+..|+.+++.+|.+.++-..+-
T Consensus        31 ~~~~~A~~~~~~~~~~~p~~~~~~~~la   58 (135)
T TIGR02552        31 GRYDEALKLFQLLAAYDPYNSRYWLGLA   58 (135)
T ss_pred             ccHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            5799999999999999999988765443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=86.06  E-value=4.7  Score=31.65  Aligned_cols=25  Identities=28%  Similarity=0.429  Sum_probs=21.4

Q ss_pred             ChhhHHHHHHHHHHHhhCCCcHHHH
Q 026807            1 MEQYDDALSAFQTALQYNPQSAEVS   25 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs~Evs   25 (233)
                      +.+|++|+..|+.|++.+|.+...-
T Consensus        85 ~g~~~~A~~~~~~al~~~p~~~~~~  109 (172)
T PRK02603         85 NGEHDKALEYYHQALELNPKQPSAL  109 (172)
T ss_pred             cCCHHHHHHHHHHHHHhCcccHHHH
Confidence            4689999999999999999886553

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=85.02  E-value=1  Score=42.04  Aligned_cols=39  Identities=23%  Similarity=0.514  Sum_probs=34.3

Q ss_pred             ChhhHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHH
Q 026807            1 MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKK   39 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs~EvsrKIkrlsqL~k~kk   39 (233)
                      +.+|++|+.+|+.||.+.|.+..+-+-+|...|..++.+
T Consensus       162 ~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  162 LGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             cCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence            358999999999999999999988888888888888776

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=84.87  E-value=1.3  Score=43.52  Aligned_cols=33  Identities=30%  Similarity=0.591  Sum_probs=26.7

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQL   34 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~EvsrKIkrlsqL   34 (233)
                      |-||+||.-||+|+++||.++++-.-|.+-..|
T Consensus       355 E~YD~AI~dye~A~e~n~sn~~~reGle~Akrl  387 (504)
T KOG0624|consen  355 EMYDDAIHDYEKALELNESNTRAREGLERAKRL  387 (504)
T ss_pred             HHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence            579999999999999999999886655444333

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=84.73  E-value=3.4  Score=27.40  Aligned_cols=25  Identities=24%  Similarity=0.632  Sum_probs=21.4

Q ss_pred             ChhhHHHHHHHHHHHhhCCCcHHHH
Q 026807            1 MEQYDDALSAFQTALQYNPQSAEVS   25 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs~Evs   25 (233)
                      +.+|++|+..|+.+++.+|.+..+.
T Consensus        42 ~g~~~~A~~~l~~~l~~~p~~~~~~   66 (73)
T PF13371_consen   42 LGRYEEALEDLERALELSPDDPDAR   66 (73)
T ss_pred             hccHHHHHHHHHHHHHHCCCcHHHH
Confidence            4689999999999999999776654

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=84.50  E-value=8  Score=30.04  Aligned_cols=43  Identities=12%  Similarity=0.217  Sum_probs=30.3

Q ss_pred             ChhhHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 026807            1 MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQE   43 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs~EvsrKIkrlsqL~k~kkra~e   43 (233)
                      +.+|++|+..|+.|++.+|.+...+.-.-.|..+.....+..+
T Consensus        48 ~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~e   90 (168)
T CHL00033         48 EGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTK   90 (168)
T ss_pred             cCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHH
Confidence            3679999999999999988766555445556555555554444

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=83.99  E-value=2.3  Score=41.55  Aligned_cols=24  Identities=42%  Similarity=0.638  Sum_probs=21.9

Q ss_pred             ChhhHHHHHHHHHHHhhCCCcHHH
Q 026807            1 MEQYDDALSAFQTALQYNPQSAEV   24 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs~Ev   24 (233)
                      +.+||+|++.|+.||++||.+.|.
T Consensus        88 lGryeEAIa~f~rALeL~Pd~aeA  111 (453)
T PLN03098         88 KGRVKDALAQFETALELNPNPDEA  111 (453)
T ss_pred             cCCHHHHHHHHHHHHhhCCCchHH
Confidence            579999999999999999999874

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=83.72  E-value=9.1  Score=28.23  Aligned_cols=27  Identities=15%  Similarity=0.170  Sum_probs=21.5

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHHHHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEVSRKI   28 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~EvsrKI   28 (233)
                      .+|++|+..|+.+++.+|.+.++...+
T Consensus        45 ~~~~~A~~~~~~~l~~~p~~~~~~~~l   71 (234)
T TIGR02521        45 GDLEVAKENLDKALEHDPDDYLAYLAL   71 (234)
T ss_pred             CCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence            578999999999999999887655443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=83.24  E-value=5.8  Score=32.87  Aligned_cols=30  Identities=33%  Similarity=0.507  Sum_probs=20.9

Q ss_pred             ChhhHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 026807            1 MEQYDDALSAFQTALQYNPQSAEVSRKIKR   30 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs~EvsrKIkr   30 (233)
                      +.+|++|+.+|+.|++++|.+.++---+-.
T Consensus        86 ~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~  115 (198)
T PRK10370         86 RNDYDNALLAYRQALQLRGENAELYAALAT  115 (198)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            456777777777777777777776554433

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=82.77  E-value=2.1  Score=33.39  Aligned_cols=27  Identities=19%  Similarity=0.327  Sum_probs=22.8

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHHHHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEVSRKI   28 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~EvsrKI   28 (233)
                      .+|++|+..|+.|++.||++.+.--.+
T Consensus        72 g~~~~A~~~y~~Al~l~p~~~~a~~~l   98 (144)
T PRK15359         72 KEYTTAINFYGHALMLDASHPEPVYQT   98 (144)
T ss_pred             hhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence            589999999999999999998765443

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=82.19  E-value=2.7  Score=30.49  Aligned_cols=42  Identities=14%  Similarity=0.264  Sum_probs=31.0

Q ss_pred             ChhhHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHH
Q 026807            1 MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQ   42 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs~EvsrKIkrlsqL~k~kkra~   42 (233)
                      +.+|++|+..|+.+++.+|.+.++--.+-.+-...++..+|.
T Consensus        64 ~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~  105 (135)
T TIGR02552        64 LKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESAL  105 (135)
T ss_pred             HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHH
Confidence            357999999999999999999888766555544444444443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	233
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	2e-05
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	2e-05
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	6e-04
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	6e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 2e-05
 Identities = 34/254 (13%), Positives = 64/254 (25%), Gaps = 58/254 (22%)

Query: 5   DDALSAFQTALQYN-----PQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDE 59
            + +      L Y         ++ S  IK      + + R         N  +V  L  
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV--LLN 252

Query: 60  FKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPI 119
            ++         + W   F+   + + T       T     +V    D     T  +  +
Sbjct: 253 VQNA--------KAWNA-FNLSCKILLT-------TR--FKQV---TDFLSAATTTHISL 291

Query: 120 VNVDKAFESPHTHGSCFQFLRQYADDSFSSAACLVAP-------KSIISYPQVWRGQGLR 172
            +               ++L     D          P       +SI      W      
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQD-LPREVLTTNPRRLSIIAESIRDGLATWDN---- 346

Query: 173 KWRHSQQD-------GFFVQFESPLLRKLW-----FIPSSNEKGKTLCR-----DPEVLD 215
            W+H   D             E    RK++     F PS++     L           + 
Sbjct: 347 -WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM 405

Query: 216 ISAHEVFPRLFKEK 229
           +  +++      EK
Sbjct: 406 VVVNKLHKYSLVEK 419

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 11/68 (16%), Positives = 29/68 (42%)

Query: 1   MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEF 60
           + ++  AL  ++T ++  P   +   K +  +++ K K   + +        +V  LD  
Sbjct: 94  LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIE 153

Query: 61  KSEMSEKY 68
              + ++Y
Sbjct: 154 SMTIEDEY 161

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 43.4 bits (102), Expect = 2e-05
 Identities = 23/150 (15%), Positives = 44/150 (29%), Gaps = 8/150 (5%)

Query: 1   MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEF 60
           ME YD+A++  Q A     +           +     KKR   +E  R + +   H    
Sbjct: 85  MESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLT 144

Query: 61  KSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIV 120
           +   +E+    E  +       +      +     +K D  +  + +      EK     
Sbjct: 145 RLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKRKKRD 204

Query: 121 NVD--------KAFESPHTHGSCFQFLRQY 142
             D        +    P    S   + R+ 
Sbjct: 205 IPDYLCGKISFELMREPCITPSGITYDRKD 234

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 39.3 bits (92), Expect = 6e-04
 Identities = 9/41 (21%), Positives = 23/41 (56%)

Query: 1   MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRA 41
            E YD+A+  ++TA ++N    ++   +++  +L K  ++ 
Sbjct: 342 EEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKR 382

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 37.7 bits (88), Expect = 6e-04
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 1   MEQYDDALSAFQTALQYNPQSAE-VSRKIKRVSQLAKDKKRAQEVENIR 48
           ME YD+A++  Q A     +        I    ++AK KKR   +E  R
Sbjct: 90  MESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK-KKRWNSIEERR 137

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	233
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	95.11
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	94.93
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	94.8
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	94.78
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	94.59
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	94.45
4g1t_A	472	Interferon-induced protein with tetratricopeptide	94.34
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	94.33
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	94.2
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	94.11
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	94.08
3k9i_A	117	BH0479 protein; putative protein binding protein,	94.08
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	94.02
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	93.86
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	93.82
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	93.81
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	93.77
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	93.76
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	93.7
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	93.55
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	93.45
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	93.43
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	93.42
2l6j_A	111	TPR repeat-containing protein associated with HSP;	93.29
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	93.25
2kat_A	115	Uncharacterized protein; NESG, structure, structur	93.24
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	93.22
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	93.05
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	93.0
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	92.95
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	92.8
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	92.74
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	92.65
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	92.45
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	92.42
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	92.33
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	92.25
3k9i_A	117	BH0479 protein; putative protein binding protein,	92.24
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	92.13
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	92.1
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	92.1
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	92.03
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	92.0
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	91.92
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	91.88
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	91.77
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	91.68
2l6j_A	111	TPR repeat-containing protein associated with HSP;	91.53
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	91.48
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	91.42
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	91.21
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	91.21
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	91.19
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	91.13
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	91.12
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	91.12
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	91.11
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	91.11
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	91.0
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	90.92
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	90.88
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	90.84
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	90.71
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	90.55
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	90.52
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	90.45
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	90.39
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	90.34
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	90.24
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	90.17
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	90.13
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	89.95
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	89.89
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	89.83
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	89.73
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	89.71
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	89.22
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	89.21
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	89.18
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	89.12
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	88.95
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	88.72
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	88.64
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	88.5
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	88.43
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	88.02
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	87.57
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	87.56
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	87.5
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	87.48
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	87.31
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	87.27
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	87.11
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	87.0
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	86.91
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	86.91
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	86.85
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	86.77
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	86.52
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	86.48
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	86.06
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	86.03
4g1t_A	472	Interferon-induced protein with tetratricopeptide	85.99
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	85.98
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	85.78
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	85.55
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	85.36
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	85.17
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	84.8
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	84.73
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	84.36
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	83.89
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	83.88
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	83.78
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	83.55
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	83.5
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	83.32
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	83.25
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	83.04
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	82.94
3u4t_A	272	TPR repeat-containing protein; structural genomics	82.54
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	82.34
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	82.29
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	82.08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	81.95
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	80.97
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	80.94
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	80.7
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	80.58

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=95.11  E-value=0.089  Score=35.39  Aligned_cols=27  Identities=15%  Similarity=0.316  Sum_probs=18.9

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHHHHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEVSRKI   28 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~EvsrKI   28 (233)
                      .+|++|+..|+.|++.+|.+.++-..+
T Consensus        18 ~~~~~A~~~~~~al~~~p~~~~~~~~~   44 (126)
T 3upv_A           18 SDWPNAVKAYTEMIKRAPEDARGYSNR   44 (126)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence            467777888888887777776654433

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=94.93  E-value=0.081  Score=37.47  Aligned_cols=29  Identities=24%  Similarity=0.528  Sum_probs=24.6

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEVSRKIKR   30 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~EvsrKIkr   30 (233)
                      .+|++|+..|+.||+.||.+.++-..+-.
T Consensus        19 g~~~~A~~~~~~al~~~p~~~~~~~~la~   47 (184)
T 3vtx_A           19 GDFDGAIRAYKKVLKADPNNVETLLKLGK   47 (184)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            57999999999999999999987655433

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=94.80  E-value=0.1  Score=36.86  Aligned_cols=24  Identities=8%  Similarity=0.075  Sum_probs=18.2

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEVS   25 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~Evs   25 (233)
                      .+|++|+..|+.||+++|.+...-
T Consensus        77 ~~~~~A~~~~~~al~~~p~~~~a~  100 (162)
T 3rkv_A           77 GDLHEAEETSSEVLKREETNEKAL  100 (162)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred             CcHHHHHHHHHHHHhcCCcchHHH
Confidence            567888888888888888876653

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=94.78  E-value=0.12  Score=34.78  Aligned_cols=27  Identities=15%  Similarity=0.253  Sum_probs=23.3

Q ss_pred             ChhhHHHHHHHHHHHhhCCCcHHHHHH
Q 026807            1 MEQYDDALSAFQTALQYNPQSAEVSRK   27 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs~EvsrK   27 (233)
                      +.+|++|+..|+.|++.+|.+.++-.-
T Consensus        20 ~g~~~~A~~~~~~al~~~p~~~~a~~~   46 (100)
T 3ma5_A           20 HDNASRALALFEELVETDPDYVGTYYH   46 (100)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence            468999999999999999999886443

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=94.59  E-value=0.16  Score=35.49  Aligned_cols=31  Identities=23%  Similarity=0.330  Sum_probs=25.5

Q ss_pred             ChhhHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 026807            1 MEQYDDALSAFQTALQYNPQSAEVSRKIKRV   31 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs~EvsrKIkrl   31 (233)
                      +.+|++|+..|+.|++.+|.+.++-..+-.+
T Consensus        30 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~   60 (121)
T 1hxi_A           30 LANLAEAALAFEAVCQKEPEREEAWRSLGLT   60 (121)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            3579999999999999999999876654444

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.45  E-value=0.26  Score=32.72  Aligned_cols=39  Identities=15%  Similarity=0.207  Sum_probs=28.5

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKR   40 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~EvsrKIkrlsqL~k~kkr   40 (233)
                      .+|++|+..|+.|++.+|.+.....-.-.+..+....++
T Consensus        42 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~   80 (148)
T 2dba_A           42 GDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLED   80 (148)
T ss_dssp             TCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHcc
Confidence            579999999999999999986555555555555444433

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=94.34  E-value=0.044  Score=44.25  Aligned_cols=29  Identities=24%  Similarity=0.394  Sum_probs=24.6

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEVSRKIKR   30 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~EvsrKIkr   30 (233)
                      .+|++|+..|+.||+.+|.+.+...-+-.
T Consensus       152 ~~y~~A~~~~~kal~~~p~~~~~~~~~~~  180 (472)
T 4g1t_A          152 NQNERAKVCFEKALEKKPKNPEFTSGLAI  180 (472)
T ss_dssp             THHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            47999999999999999999987655443

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=94.33  E-value=0.052  Score=39.68  Aligned_cols=29  Identities=14%  Similarity=0.242  Sum_probs=22.0

Q ss_pred             ChhhHHHHHHHHHHHhhCCCcHHHHHHHH
Q 026807            1 MEQYDDALSAFQTALQYNPQSAEVSRKIK   29 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs~EvsrKIk   29 (233)
                      +.+|++|+..|+.|++.+|.+.++--.+-
T Consensus       101 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg  129 (198)
T 2fbn_A          101 NKDYPKAIDHASKVLKIDKNNVKALYKLG  129 (198)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence            46788899999999988888876654433

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=94.20  E-value=0.33  Score=32.35  Aligned_cols=30  Identities=20%  Similarity=0.226  Sum_probs=24.2

Q ss_pred             ChhhHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 026807            1 MEQYDDALSAFQTALQYNPQSAEVSRKIKR   30 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs~EvsrKIkr   30 (233)
                      +.+|++|+..|+.|++.+|.+.++-..+-.
T Consensus        22 ~~~~~~A~~~~~~al~~~~~~~~~~~~l~~   51 (137)
T 3q49_B           22 GRKYPEAAACYGRAITRNPLVAVYYTNRAL   51 (137)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hCcHHHHHHHHHHHHhhCcCcHHHHHHHHH
Confidence            357999999999999999999876554433

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=94.11  E-value=0.67  Score=29.62  Aligned_cols=28  Identities=18%  Similarity=0.370  Sum_probs=23.4

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHHHHHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEVSRKIK   29 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~EvsrKIk   29 (233)
                      .+|++|+..|+.|++.+|.+..+-..+-
T Consensus        18 ~~~~~A~~~~~~a~~~~~~~~~~~~~la   45 (131)
T 1elr_A           18 KDFDTALKHYDKAKELDPTNMTYITNQA   45 (131)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence            5799999999999999999987654443

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=94.08  E-value=0.36  Score=30.78  Aligned_cols=31  Identities=19%  Similarity=0.326  Sum_probs=25.0

Q ss_pred             ChhhHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 026807            1 MEQYDDALSAFQTALQYNPQSAEVSRKIKRV   31 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs~EvsrKIkrl   31 (233)
                      +.+|++|+..|+.|++.+|.+.++-..+-.+
T Consensus        25 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~   55 (131)
T 2vyi_A           25 VENFEAAVHFYGKAIELNPANAVYFCNRAAA   55 (131)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            4689999999999999999998765544443

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=94.08  E-value=0.11  Score=35.19  Aligned_cols=23  Identities=13%  Similarity=0.302  Sum_probs=11.5

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEV   24 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~Ev   24 (233)
                      .+|++|+..|+.|++.+|.+.++
T Consensus        41 ~~~~~A~~~~~~al~~~p~~~~~   63 (117)
T 3k9i_A           41 GEYRKAEAVLANGVKQFPNHQAL   63 (117)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCchHH
Confidence            34555555555555555555443

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=94.02  E-value=0.18  Score=31.62  Aligned_cols=27  Identities=19%  Similarity=0.440  Sum_probs=22.9

Q ss_pred             ChhhHHHHHHHHHHHhhCCCcHHHHHH
Q 026807            1 MEQYDDALSAFQTALQYNPQSAEVSRK   27 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs~EvsrK   27 (233)
                      +.+|++|+..|+.|++.+|.+.++-..
T Consensus        19 ~~~~~~A~~~~~~a~~~~~~~~~~~~~   45 (112)
T 2kck_A           19 AGNYTESIDLFEKAIQLDPEESKYWLM   45 (112)
T ss_dssp             SCCHHHHHHHHHHHHHHCCCCHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHhCcCCHHHHHH
Confidence            357999999999999999999876543

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=93.86  E-value=0.44  Score=29.94  Aligned_cols=30  Identities=20%  Similarity=0.384  Sum_probs=24.5

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEVSRKIKRV   31 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~EvsrKIkrl   31 (233)
                      .+|++|+..|+.|++.+|.+.++-..+-.+
T Consensus        18 ~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~   47 (118)
T 1elw_A           18 GNIDDALQCYSEAIKLDPHNHVLYSNRSAA   47 (118)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHCCCcHHHHHHHHHH
Confidence            579999999999999999998765544433

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=93.82  E-value=0.31  Score=34.34  Aligned_cols=27  Identities=19%  Similarity=0.386  Sum_probs=23.5

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHHHHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEVSRKI   28 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~EvsrKI   28 (233)
                      .+|++|+..|+.|++.+|.+.++-..+
T Consensus        27 g~~~~A~~~~~~al~~~p~~~~~~~~~   53 (126)
T 4gco_A           27 GDYPTAMRHYNEAVKRDPENAILYSNR   53 (126)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            579999999999999999998876544

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=93.81  E-value=0.42  Score=32.02  Aligned_cols=27  Identities=11%  Similarity=0.318  Sum_probs=23.1

Q ss_pred             ChhhHHHHHHHHHHHhhCCCcHHHHHH
Q 026807            1 MEQYDDALSAFQTALQYNPQSAEVSRK   27 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs~EvsrK   27 (233)
                      +.+|++|+..|+.|++.+|.+.++-..
T Consensus        51 ~~~~~~A~~~~~~al~~~p~~~~~~~~   77 (126)
T 3upv_A           51 LMSFPEAIADCNKAIEKDPNFVRAYIR   77 (126)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence            468999999999999999999776443

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=93.77  E-value=0.2  Score=34.98  Aligned_cols=26  Identities=23%  Similarity=0.222  Sum_probs=23.0

Q ss_pred             ChhhHHHHHHHHHHHhhCCCcHHHHH
Q 026807            1 MEQYDDALSAFQTALQYNPQSAEVSR   26 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs~Evsr   26 (233)
                      +.+|++|+.+|+.|++.+|.+.++-.
T Consensus        64 ~g~~~~A~~~~~~al~l~P~~~~~~~   89 (121)
T 1hxi_A           64 NEKDGLAIIALNHARMLDPKDIAVHA   89 (121)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            46899999999999999999988653

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=93.76  E-value=0.26  Score=33.38  Aligned_cols=29  Identities=17%  Similarity=0.130  Sum_probs=22.6

Q ss_pred             ChhhHHHHHHHHHHHhhCCCcHHHHHHHH
Q 026807            1 MEQYDDALSAFQTALQYNPQSAEVSRKIK   29 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs~EvsrKIk   29 (233)
                      +.+|++|+..|+.|++.+|.+.++-..+-
T Consensus        60 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~a   88 (166)
T 1a17_A           60 TECYGYALGDATRAIELDKKYIKGYYRRA   88 (166)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence            35789999999999999998877654433

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=93.70  E-value=0.26  Score=34.84  Aligned_cols=27  Identities=19%  Similarity=0.345  Sum_probs=19.3

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHHHHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEVSRKI   28 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~EvsrKI   28 (233)
                      .+|++|+..|+.|++.+|.+.++-..+
T Consensus        25 g~~~~A~~~~~~al~~~p~~~~~~~~l   51 (164)
T 3sz7_A           25 KEYSKAIDLYTQALSIAPANPIYLSNR   51 (164)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCcCHHHHHHH
Confidence            467788888888888888777654443

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=93.55  E-value=0.083  Score=34.07  Aligned_cols=30  Identities=20%  Similarity=0.282  Sum_probs=23.4

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHH-HHHHHHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAE-VSRKIKRV   31 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~E-vsrKIkrl   31 (233)
                      .+|++|+..|+.|++.+|.+.+ +-..+-.+
T Consensus        14 ~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~   44 (99)
T 2kc7_A           14 GDIENALQALEEFLQTEPVGKDEAYYLMGNA   44 (99)
T ss_dssp             TCHHHHHHHHHHHHHHCSSTHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence            5789999999999999999988 54444333

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=93.45  E-value=0.56  Score=31.20  Aligned_cols=31  Identities=26%  Similarity=0.307  Sum_probs=25.1

Q ss_pred             ChhhHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 026807            1 MEQYDDALSAFQTALQYNPQSAEVSRKIKRV   31 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs~EvsrKIkrl   31 (233)
                      +.+|++|+..|+.|++.+|.+.++-..+-.+
T Consensus        56 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~   86 (137)
T 3q49_B           56 MQQPEQALADCRRALELDGQSVKAHFFLGQC   86 (137)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence            4689999999999999999998875544433

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=93.43  E-value=0.23  Score=40.70  Aligned_cols=25  Identities=12%  Similarity=0.284  Sum_probs=16.5

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEVSR   26 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~Evsr   26 (233)
                      .+|++|+..|+.||+++|.+...-.
T Consensus       210 g~~~~A~~~~~~al~~~p~~~~a~~  234 (336)
T 1p5q_A          210 QAFSAAIESCNKALELDSNNEKGLS  234 (336)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHH
Confidence            4677777777777777776665443

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=93.42  E-value=0.33  Score=31.47  Aligned_cols=30  Identities=20%  Similarity=0.408  Sum_probs=24.6

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEVSRKIKRV   31 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~EvsrKIkrl   31 (233)
                      .+|++|+..|+.|++.+|.+.++-..+-.+
T Consensus        30 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~   59 (133)
T 2lni_A           30 GDYPQAMKHYTEAIKRNPKDAKLYSNRAAC   59 (133)
T ss_dssp             TCSHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence            579999999999999999998776554444

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=93.29  E-value=0.15  Score=32.68  Aligned_cols=26  Identities=15%  Similarity=0.278  Sum_probs=22.5

Q ss_pred             ChhhHHHHHHHHHHHhhCCCcHHHHH
Q 026807            1 MEQYDDALSAFQTALQYNPQSAEVSR   26 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs~Evsr   26 (233)
                      +.+|++|+..|+.|++.+|.+.++-.
T Consensus        17 ~~~~~~A~~~~~~al~~~p~~~~~~~   42 (111)
T 2l6j_A           17 QGLYREAVHCYDQLITAQPQNPVGYS   42 (111)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             cCCHHHHHHHHHHHHhcCCCCHHHHH
Confidence            36899999999999999999977643

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=93.25  E-value=0.16  Score=31.49  Aligned_cols=27  Identities=33%  Similarity=0.577  Sum_probs=22.9

Q ss_pred             ChhhHHHHHHHHHHHhhCCCcHHHHHH
Q 026807            1 MEQYDDALSAFQTALQYNPQSAEVSRK   27 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs~EvsrK   27 (233)
                      +.+|++|+..|+.|++.+|.+.++-..
T Consensus        22 ~~~~~~A~~~~~~a~~~~~~~~~~~~~   48 (91)
T 1na3_A           22 QGDYDEAIEYYQKALELDPNNAEAWYN   48 (91)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             ccCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            468999999999999999999776443

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=93.24  E-value=0.72  Score=30.60  Aligned_cols=26  Identities=31%  Similarity=0.559  Sum_probs=21.1

Q ss_pred             ChhhHHHHHHHHHHHhhCCCcHHHHH
Q 026807            1 MEQYDDALSAFQTALQYNPQSAEVSR   26 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs~Evsr   26 (233)
                      +.+|++|+..|+.|++.+|.+.++-.
T Consensus        32 ~g~~~~A~~~~~~al~~~p~~~~~~~   57 (115)
T 2kat_A           32 HEQFDAALPHLRAALDFDPTYSVAWK   57 (115)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHCCCcHHHHH
Confidence            35788999999999999998877654

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=93.22  E-value=0.5  Score=33.35  Aligned_cols=27  Identities=15%  Similarity=0.128  Sum_probs=23.1

Q ss_pred             ChhhHHHHHHHHHHHhhCCCcHHHHHH
Q 026807            1 MEQYDDALSAFQTALQYNPQSAEVSRK   27 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs~EvsrK   27 (233)
                      +.+|++|+..|+.|++.+|.+.++-..
T Consensus        58 ~g~~~~A~~~~~~al~~~p~~~~~~~~   84 (164)
T 3sz7_A           58 SGQHEKAAEDAELATVVDPKYSKAWSR   84 (164)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            468999999999999999999776443

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=93.05  E-value=0.14  Score=36.20  Aligned_cols=27  Identities=26%  Similarity=0.353  Sum_probs=18.2

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHHHHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEVSRKI   28 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~EvsrKI   28 (233)
                      .+|++|+..|+.|++.+|.+.++-..+
T Consensus        87 ~~~~~a~~~~~~a~~~~~~~~~~~~~l  113 (184)
T 3vtx_A           87 DEKQAAIDALQRAIALNTVYADAYYKL  113 (184)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCccchHHHHHH
Confidence            456777777777777777776655443

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=93.00  E-value=0.77  Score=32.10  Aligned_cols=25  Identities=12%  Similarity=0.409  Sum_probs=22.2

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEVSR   26 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~Evsr   26 (233)
                      .+|++|+..|+.|++.+|.+.++-.
T Consensus        22 ~~~~~A~~~y~~Al~~~p~~~~~~~   46 (127)
T 4gcn_A           22 KDFEKAHVHYDKAIELDPSNITFYN   46 (127)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            5799999999999999999987644

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=92.95  E-value=0.16  Score=31.53  Aligned_cols=28  Identities=32%  Similarity=0.669  Sum_probs=23.7

Q ss_pred             ChhhHHHHHHHHHHHhhCCCcHHHHHHH
Q 026807            1 MEQYDDALSAFQTALQYNPQSAEVSRKI   28 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs~EvsrKI   28 (233)
                      +.+|++|+..|+.|++.+|.+.++-..+
T Consensus        56 ~~~~~~A~~~~~~a~~~~p~~~~~~~~l   83 (91)
T 1na3_A           56 QGDYDEAIEYYQKALELDPNNAEAKQNL   83 (91)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HhhHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            4689999999999999999998765443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=92.80  E-value=0.8  Score=28.87  Aligned_cols=26  Identities=35%  Similarity=0.612  Sum_probs=22.1

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHHHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEVSRK   27 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~EvsrK   27 (233)
                      .+|++|+..|+.|++.+|.+.++...
T Consensus        23 ~~~~~A~~~~~~~~~~~~~~~~~~~~   48 (125)
T 1na0_A           23 GDYDEAIEYYQKALELDPNNAEAWYN   48 (125)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCcCcHHHHHH
Confidence            57999999999999999998776443

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=92.74  E-value=0.35  Score=34.10  Aligned_cols=25  Identities=12%  Similarity=0.251  Sum_probs=21.0

Q ss_pred             ChhhHHHHHHHHHHHhhCCCcHHHH
Q 026807            1 MEQYDDALSAFQTALQYNPQSAEVS   25 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs~Evs   25 (233)
                      |.+|++|+..|+.|++.+|.+.+.-
T Consensus        60 ~~~~~~A~~~~~~al~~~p~~~~a~   84 (126)
T 4gco_A           60 LMEFQRALDDCDTCIRLDSKFIKGY   84 (126)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             hccHHHHHHHHHHHHHhhhhhhHHH
Confidence            4688999999999999999987753

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.65  E-value=0.52  Score=31.23  Aligned_cols=27  Identities=19%  Similarity=0.304  Sum_probs=22.6

Q ss_pred             ChhhHHHHHHHHHHHhhCCCcHHHHHH
Q 026807            1 MEQYDDALSAFQTALQYNPQSAEVSRK   27 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs~EvsrK   27 (233)
                      +.+|++|+..|+.|++.+|.+.++-..
T Consensus        78 ~~~~~~A~~~~~~~~~~~~~~~~~~~~  104 (148)
T 2dba_A           78 LEDYDKAETEASKAIEKDGGDVKALYR  104 (148)
T ss_dssp             TTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred             HccHHHHHHHHHHHHhhCccCHHHHHH
Confidence            468999999999999999998766443

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=92.45  E-value=0.11  Score=32.70  Aligned_cols=28  Identities=14%  Similarity=0.364  Sum_probs=23.1

Q ss_pred             ChhhHHHHHHHHHHHhhCCC--cHHHHHHH
Q 026807            1 MEQYDDALSAFQTALQYNPQ--SAEVSRKI   28 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npq--s~EvsrKI   28 (233)
                      +.+|++|+..|+.|++.+|.  +.++-..+
T Consensus        53 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l   82 (112)
T 2kck_A           53 LERYEEAVDCYNYVINVIEDEYNKDVWAAK   82 (112)
T ss_dssp             TTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence            46899999999999999999  77664433

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=92.42  E-value=0.76  Score=33.42  Aligned_cols=39  Identities=13%  Similarity=0.236  Sum_probs=31.2

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKR   40 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~EvsrKIkrlsqL~k~kkr   40 (233)
                      .+|++|+..|+.|++.+|.+.++-..+.++-....+..+
T Consensus       136 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~  174 (198)
T 2fbn_A          136 GFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARK  174 (198)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             ccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHH
Confidence            579999999999999999999988777766555444333

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=92.33  E-value=0.39  Score=35.92  Aligned_cols=25  Identities=12%  Similarity=0.095  Sum_probs=17.9

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEVSR   26 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~Evsr   26 (233)
                      .+|++|+..|+.|++.||.+.+.-.
T Consensus        50 g~~~eA~~~~~~al~~~P~~~~~~~   74 (151)
T 3gyz_A           50 GRIEEAEVFFRFLCIYDFYNVDYIM   74 (151)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            5677777777777777777776543

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=92.25  E-value=0.15  Score=43.86  Aligned_cols=25  Identities=16%  Similarity=0.306  Sum_probs=18.0

Q ss_pred             ChhhHHHHHHHHHHHhhCCCcHHHH
Q 026807            1 MEQYDDALSAFQTALQYNPQSAEVS   25 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs~Evs   25 (233)
                      +.+|++|+..|+.||+++|++...-
T Consensus       330 ~g~~~~A~~~~~~al~~~p~~~~a~  354 (457)
T 1kt0_A          330 LREYTKAVECCDKALGLDSANEKGL  354 (457)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred             hcCHHHHHHHHHHHHhcCCccHHHH
Confidence            3567778888888888777776543

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=92.24  E-value=0.35  Score=32.67  Aligned_cols=41  Identities=7%  Similarity=0.063  Sum_probs=23.3

Q ss_pred             ChhhHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHH
Q 026807            1 MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRA   41 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs~EvsrKIkrlsqL~k~kkra   41 (233)
                      +.+|++|+..|+.|++.++.+.....-.-.|..+.....+-
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~   43 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEY   43 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCH
Confidence            46899999999999999644443333344444444444333

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=92.13  E-value=0.22  Score=34.81  Aligned_cols=29  Identities=21%  Similarity=0.203  Sum_probs=22.0

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEVSRKIKR   30 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~EvsrKIkr   30 (233)
                      .+|++|+..|+.|++.+|.+.++-..+-.
T Consensus        32 g~~~~A~~~~~~al~~~p~~~~~~~~lg~   60 (142)
T 2xcb_A           32 GKWDDAQKIFQALCMLDHYDARYFLGLGA   60 (142)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence            57888888888888888888876554433

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=92.10  E-value=0.74  Score=32.08  Aligned_cols=28  Identities=11%  Similarity=0.224  Sum_probs=23.9

Q ss_pred             ChhhHHHHHHHHHHHhhCCCcHHHHHHH
Q 026807            1 MEQYDDALSAFQTALQYNPQSAEVSRKI   28 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs~EvsrKI   28 (233)
                      +.+|++|+..|+.|++.+|.+.++--.+
T Consensus        65 ~g~~~~A~~~~~~al~~~p~~~~~~~~l   92 (142)
T 2xcb_A           65 LGLYEQALQSYSYGALMDINEPRFPFHA   92 (142)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred             HhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence            4689999999999999999999875443

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=92.10  E-value=0.5  Score=34.06  Aligned_cols=26  Identities=19%  Similarity=0.221  Sum_probs=18.1

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHHHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEVSRK   27 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~EvsrK   27 (233)
                      .+|++|+..|+.|++.+|.+.++-..
T Consensus        35 g~~~~A~~~~~~al~~~p~~~~~~~~   60 (148)
T 2vgx_A           35 GXYEDAHXVFQALCVLDHYDSRFFLG   60 (148)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CChHHHHHHHHHHHHcCcccHHHHHH
Confidence            46777777777777777777666543

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=92.03  E-value=1.3  Score=33.28  Aligned_cols=26  Identities=42%  Similarity=0.571  Sum_probs=14.7

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHHHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEVSRK   27 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~EvsrK   27 (233)
                      .+|++|+..|+.|++.+|.+.++-..
T Consensus        19 g~~~~A~~~~~~al~~~p~~~~a~~~   44 (217)
T 2pl2_A           19 GRYDAALTLFERALKENPQDPEALYW   44 (217)
T ss_dssp             TCHHHHHHHHHHHHTTSSSCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            35566666666666666665555433

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=92.00  E-value=0.22  Score=35.74  Aligned_cols=28  Identities=18%  Similarity=0.216  Sum_probs=20.0

Q ss_pred             ChhhHHHHHHHHHHHhhCCCcHHHHHHH
Q 026807            1 MEQYDDALSAFQTALQYNPQSAEVSRKI   28 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs~EvsrKI   28 (233)
                      +.+|++|+..|+.|++.||.+.++-..+
T Consensus        44 ~~~~~~A~~~~~~al~~~p~~~~a~~~l   71 (150)
T 4ga2_A           44 AKEYDLAKKYICTYINVQERDPKAHRFL   71 (150)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            3567888888888888888877664443

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=91.92  E-value=0.7  Score=34.76  Aligned_cols=27  Identities=26%  Similarity=0.306  Sum_probs=23.6

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHHHHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEVSRKI   28 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~EvsrKI   28 (233)
                      .+|++|+..|+.|++.+|.+.++-..+
T Consensus        98 g~~~~A~~~~~~al~~~P~~~~~~~~l  124 (217)
T 2pl2_A           98 GYLEQALSVLKDAERVNPRYAPLHLQR  124 (217)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence            589999999999999999999876543

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=91.88  E-value=0.39  Score=40.68  Aligned_cols=27  Identities=19%  Similarity=0.406  Sum_probs=21.5

Q ss_pred             ChhhHHHHHHHHHHHhhCCCcHHHHHH
Q 026807            1 MEQYDDALSAFQTALQYNPQSAEVSRK   27 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs~EvsrK   27 (233)
                      +.+|++|+..|+.||+.+|.+.+.--.
T Consensus       286 ~g~~~~A~~~~~~al~~~p~~~~a~~~  312 (370)
T 1ihg_A          286 MSDWQGAVDSCLEALEIDPSNTKALYR  312 (370)
T ss_dssp             TTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhCchhHHHHHH
Confidence            467899999999999999988766443

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=91.77  E-value=0.92  Score=37.15  Aligned_cols=41  Identities=17%  Similarity=0.283  Sum_probs=31.9

Q ss_pred             ChhhHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHH
Q 026807            1 MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRA   41 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs~EvsrKIkrlsqL~k~kkra   41 (233)
                      +.+|++|+..|+.||+.+|.+.++-..+..+-...++...+
T Consensus       243 ~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a  283 (336)
T 1p5q_A          243 VNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR  283 (336)
T ss_dssp             TTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999999998877666665554444433

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=91.68  E-value=0.38  Score=33.30  Aligned_cols=34  Identities=18%  Similarity=0.288  Sum_probs=27.3

Q ss_pred             ChhhHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 026807            1 MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQL   34 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs~EvsrKIkrlsqL   34 (233)
                      +.+|++|+..|+.||+++|.+.++-..++-+.++
T Consensus        59 ~g~~~~A~~~~~~al~l~P~~~~~~~n~~~~~~~   92 (104)
T 2v5f_A           59 QGDLDKALLLTKKLLELDPEHQRANGNLKYFEYI   92 (104)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHH
Confidence            3579999999999999999998886655544443

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=91.53  E-value=0.25  Score=31.56  Aligned_cols=21  Identities=24%  Similarity=0.553  Sum_probs=19.6

Q ss_pred             ChhhHHHHHHHHHHHhhCCCc
Q 026807            1 MEQYDDALSAFQTALQYNPQS   21 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs   21 (233)
                      +.+|++|+..|+.|++.+|.+
T Consensus        51 ~g~~~~A~~~~~~al~~~p~~   71 (111)
T 2l6j_A           51 LGEYTQAIQMCQQGLRYTSTA   71 (111)
T ss_dssp             TTCHHHHHHHHHHHHTSCSST
T ss_pred             hcCHHHHHHHHHHHHHhCCCc
Confidence            468999999999999999998

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=91.48  E-value=0.31  Score=31.30  Aligned_cols=24  Identities=29%  Similarity=0.634  Sum_probs=20.1

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEVS   25 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~Evs   25 (233)
                      .+|++|+..|+.|++.+|.+.++-
T Consensus        49 ~~~~~A~~~~~~al~~~p~~~~~~   72 (99)
T 2kc7_A           49 GDWQKALNNYQSAIELNPDSPALQ   72 (99)
T ss_dssp             TCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred             CCHHHHHHHHHHHHhcCCCcHHHH
Confidence            578889999999999998888765

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=91.42  E-value=1.1  Score=32.02  Aligned_cols=29  Identities=14%  Similarity=0.283  Sum_probs=21.6

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEVSRKIKR   30 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~EvsrKIkr   30 (233)
                      .+|++|+..|+.|++.+|.+.++-..+-.
T Consensus       153 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~  181 (258)
T 3uq3_A          153 SDWPNAVKAYTEMIKRAPEDARGYSNRAA  181 (258)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence            57888888888888888888766544433

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=91.21  E-value=0.26  Score=35.40  Aligned_cols=30  Identities=23%  Similarity=0.459  Sum_probs=25.3

Q ss_pred             ChhhHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 026807            1 MEQYDDALSAFQTALQYNPQSAEVSRKIKR   30 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs~EvsrKIkr   30 (233)
                      +.+|++|+..|+.|++.||.+.++-..+-.
T Consensus        78 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~  107 (150)
T 4ga2_A           78 EENTDKAVECYRRSVELNPTQKDLVLKIAE  107 (150)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cCchHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            468999999999999999999987655443

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=91.21  E-value=0.21  Score=35.09  Aligned_cols=23  Identities=4%  Similarity=0.238  Sum_probs=19.9

Q ss_pred             ChhhHHHHHHHHHHHhhCCCcHH
Q 026807            1 MEQYDDALSAFQTALQYNPQSAE   23 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs~E   23 (233)
                      |.+|++|+..|+.|++.+|.+..
T Consensus        55 ~~~~~~A~~~~~~al~~~~~~~~   77 (127)
T 4gcn_A           55 EKKFAECVQFCEKAVEVGRETRA   77 (127)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             hhhHHHHHHHHHHHHHhCcccch
Confidence            57899999999999999987643

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=91.19  E-value=0.92  Score=32.00  Aligned_cols=28  Identities=29%  Similarity=0.501  Sum_probs=19.5

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHHHHHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEVSRKIK   29 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~EvsrKIk   29 (233)
                      .+|++|+..|+.|++.+|.+.++-..+-
T Consensus        58 ~~~~~A~~~~~~al~~~p~~~~~~~~la   85 (177)
T 2e2e_A           58 NDYSNSLLAYRQALQLRGENAELYAALA   85 (177)
T ss_dssp             TCHHHHHHHHHHHHHHHCSCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            5677788888888888877766544433

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=91.13  E-value=0.39  Score=30.74  Aligned_cols=20  Identities=10%  Similarity=0.282  Sum_probs=17.4

Q ss_pred             hhhHHHHHHHHHHHhhCCCc
Q 026807            2 EQYDDALSAFQTALQYNPQS   21 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs   21 (233)
                      .+|++|+..|+.|++.+|.+
T Consensus        52 ~~~~~A~~~~~~~~~~~~~~   71 (131)
T 1elr_A           52 GDYNKCRELCEKAIEVGREN   71 (131)
T ss_dssp             TCHHHHHHHHHHHHHHHHHS
T ss_pred             ccHHHHHHHHHHHHhhcccc
Confidence            57899999999999998765

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=91.12  E-value=1.7  Score=34.39  Aligned_cols=23  Identities=30%  Similarity=0.401  Sum_probs=13.0

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEV   24 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~Ev   24 (233)
                      .+|++|+..|+.|++.+|.+..+
T Consensus        52 ~~~~~A~~~~~~al~~~p~~~~~   74 (281)
T 2c2l_A           52 QQPEQALADCRRALELDGQSVKA   74 (281)
T ss_dssp             TCHHHHHHHHHHHTTSCTTCHHH
T ss_pred             cCHHHHHHHHHHHHHhCCCCHHH
Confidence            45555666666666655555543

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=91.12  E-value=1.4  Score=28.84  Aligned_cols=34  Identities=21%  Similarity=0.307  Sum_probs=24.0

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLA   35 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~EvsrKIkrlsqL~   35 (233)
                      .+|++|+..|+.+++.+|.+.....-.-.+..+.
T Consensus        16 ~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~   49 (129)
T 2xev_A           16 GKYDDASQLFLSFLELYPNGVYTPNALYWLGESY   49 (129)
T ss_dssp             TCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence            5799999999999999999884333333344433

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=91.11  E-value=0.22  Score=39.93  Aligned_cols=23  Identities=26%  Similarity=0.407  Sum_probs=20.4

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEV   24 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~Ev   24 (233)
                      ++|++|+..|+.||+.||.+.+.
T Consensus       105 g~~~eA~~~~~kAl~l~P~~~~y  127 (158)
T 1zu2_A          105 HNFDLATQFFQQAVDEQPDNTHY  127 (158)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHH
T ss_pred             ccHHHHHHHHHHHHHhCCCCHHH
Confidence            47999999999999999998543

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=91.11  E-value=1.7  Score=29.16  Aligned_cols=26  Identities=15%  Similarity=0.247  Sum_probs=17.8

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHHHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEVSRK   27 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~EvsrK   27 (233)
                      .+|++|+..|+.+++.+|.+.++-..
T Consensus        56 ~~~~~A~~~~~~~~~~~~~~~~~~~~   81 (186)
T 3as5_A           56 GAVDRGTELLERSLADAPDNVKVATV   81 (186)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            46777777777777777777665443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=91.00  E-value=0.94  Score=32.47  Aligned_cols=29  Identities=10%  Similarity=0.267  Sum_probs=24.2

Q ss_pred             ChhhHHHHHHHHHHHhhCCCcHHHHHHHH
Q 026807            1 MEQYDDALSAFQTALQYNPQSAEVSRKIK   29 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs~EvsrKIk   29 (233)
                      +.+|++|+..|+.|++.+|.+.++-..+-
T Consensus       186 ~~~~~~A~~~~~~al~~~~~~~~~~~~l~  214 (258)
T 3uq3_A          186 LMSFPEAIADCNKAIEKDPNFVRAYIRKA  214 (258)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hCCHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence            46899999999999999999987755443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=90.92  E-value=1.4  Score=27.78  Aligned_cols=28  Identities=32%  Similarity=0.590  Sum_probs=23.2

Q ss_pred             ChhhHHHHHHHHHHHhhCCCcHHHHHHH
Q 026807            1 MEQYDDALSAFQTALQYNPQSAEVSRKI   28 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs~EvsrKI   28 (233)
                      +.+|++|+..|+.+++.+|.+.++...+
T Consensus        56 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l   83 (125)
T 1na0_A           56 QGDYDEAIEYYQKALELDPNNAEAWYNL   83 (125)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hCCHHHHHHHHHHHHHhCCccHHHHHHH
Confidence            3579999999999999999998765433

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=90.88  E-value=2  Score=27.05  Aligned_cols=26  Identities=38%  Similarity=0.639  Sum_probs=21.8

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHHHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEVSRK   27 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~EvsrK   27 (233)
                      .+|++|+..|+.+++.+|.+.++-..
T Consensus        15 ~~~~~A~~~~~~~~~~~~~~~~~~~~   40 (136)
T 2fo7_A           15 GDYDEAIEYYQKALELDPRSAEAWYN   40 (136)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCcchhHHHH
Confidence            47899999999999999998765443

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=90.84  E-value=1.3  Score=32.50  Aligned_cols=24  Identities=25%  Similarity=0.361  Sum_probs=13.1

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEVS   25 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~Evs   25 (233)
                      .+|++|+..|+.|++.+|.+.++-
T Consensus        56 ~~~~~A~~~~~~al~~~p~~~~~~   79 (228)
T 4i17_A           56 KKYKEAADYFDIAIKKNYNLANAY   79 (228)
T ss_dssp             TCHHHHHHHHHHHHHTTCSHHHHH
T ss_pred             hcHHHHHHHHHHHHHhCcchHHHH
Confidence            345555555555555555554443

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=90.71  E-value=0.45  Score=35.56  Aligned_cols=29  Identities=21%  Similarity=0.322  Sum_probs=23.4

Q ss_pred             ChhhHHHHHHHHHHHhhCCCcHHHHHHHH
Q 026807            1 MEQYDDALSAFQTALQYNPQSAEVSRKIK   29 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs~EvsrKIk   29 (233)
                      +.+|++|+..|+.|++.+|.+.++-..+-
T Consensus        67 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg   95 (208)
T 3urz_A           67 NRNYDKAYLFYKELLQKAPNNVDCLEACA   95 (208)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence            46799999999999999999987754433

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=90.55  E-value=1.2  Score=31.24  Aligned_cols=30  Identities=17%  Similarity=0.290  Sum_probs=23.7

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEVSRKIKRV   31 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~EvsrKIkrl   31 (233)
                      .+|++|+..|+.+++.+|.+.++-..+-.+
T Consensus        22 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~   51 (225)
T 2vq2_A           22 QDYRQATASIEDALKSDPKNELAWLVRAEI   51 (225)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence            578999999999999999987765544433

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=90.52  E-value=0.67  Score=29.07  Aligned_cols=27  Identities=11%  Similarity=0.129  Sum_probs=22.6

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHHHHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEVSRKI   28 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~EvsrKI   28 (233)
                      .+|++|+..|+.|++.+|.+.++-..+
T Consensus        52 ~~~~~A~~~~~~~~~~~~~~~~~~~~~   78 (118)
T 1elw_A           52 GDYQKAYEDGCKTVDLKPDWGKGYSRK   78 (118)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcccHHHHHHH
Confidence            579999999999999999987765433

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=90.45  E-value=2  Score=27.03  Aligned_cols=27  Identities=37%  Similarity=0.650  Sum_probs=22.6

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHHHHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEVSRKI   28 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~EvsrKI   28 (233)
                      .+|++|+..|+.+++.+|.+..+-..+
T Consensus        49 ~~~~~A~~~~~~~~~~~~~~~~~~~~l   75 (136)
T 2fo7_A           49 GDYDEAIEYYQKALELDPRSAEAWYNL   75 (136)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHCCCchHHHHHH
Confidence            479999999999999999987765443

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=90.39  E-value=1.4  Score=29.57  Aligned_cols=29  Identities=21%  Similarity=0.290  Sum_probs=24.0

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEVSRKIKR   30 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~EvsrKIkr   30 (233)
                      .+|++|+..|+.+++.+|++.++-..+-.
T Consensus        90 ~~~~~A~~~~~~~~~~~~~~~~~~~~~a~  118 (186)
T 3as5_A           90 QKYDLAVPLLIKVAEANPINFNVRFRLGV  118 (186)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhcCcHhHHHHHHHHH
Confidence            57999999999999999999877654433

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=90.34  E-value=0.81  Score=34.21  Aligned_cols=28  Identities=14%  Similarity=0.170  Sum_probs=24.2

Q ss_pred             ChhhHHHHHHHHHHHhhCCCcHHHHHHH
Q 026807            1 MEQYDDALSAFQTALQYNPQSAEVSRKI   28 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs~EvsrKI   28 (233)
                      +.+|++|+.+|+.|++.+|.+.+.-..+
T Consensus        83 ~g~~~~Ai~~~~~al~l~P~~~~~~~~l  110 (151)
T 3gyz_A           83 KEQFQQAADLYAVAFALGKNDYTPVFHT  110 (151)
T ss_dssp             TTCHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred             HccHHHHHHHHHHHHhhCCCCcHHHHHH
Confidence            4689999999999999999999875543

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=90.24  E-value=1.2  Score=32.59  Aligned_cols=26  Identities=27%  Similarity=0.195  Sum_probs=18.5

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHHHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEVSRK   27 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~EvsrK   27 (233)
                      .+|++|+..|+.|++.+|.+.++-..
T Consensus        57 ~~~~~A~~~~~~al~~~~~~~~~~~~   82 (275)
T 1xnf_A           57 GLRALARNDFSQALAIRPDMPEVFNY   82 (275)
T ss_dssp             TCHHHHHHHHHHHHHHCCCCHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCCcHHHHHH
Confidence            46777777777777777777665443

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=90.17  E-value=1.4  Score=31.71  Aligned_cols=28  Identities=18%  Similarity=0.233  Sum_probs=23.7

Q ss_pred             ChhhHHHHHHHHHHHhhCCCcHHHHHHH
Q 026807            1 MEQYDDALSAFQTALQYNPQSAEVSRKI   28 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs~EvsrKI   28 (233)
                      +.+|++|+..|+.|++.+|.+.++-..+
T Consensus        68 ~g~~~~A~~~~~~al~l~p~~~~~~~~l   95 (148)
T 2vgx_A           68 MGQYDLAIHSYSYGAVMDIXEPRFPFHA   95 (148)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCTHHHHHH
T ss_pred             HhhHHHHHHHHHHHHhcCCCCchHHHHH
Confidence            4689999999999999999998875443

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=90.13  E-value=1.4  Score=31.51  Aligned_cols=28  Identities=18%  Similarity=0.287  Sum_probs=18.8

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHHHHHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEVSRKIK   29 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~EvsrKIk   29 (233)
                      .+|++|+..|+.+++.+|.+.++-..+-
T Consensus        71 ~~~~~A~~~~~~~~~~~~~~~~~~~~la   98 (243)
T 2q7f_A           71 NELERALAFYDKALELDSSAATAYYGAG   98 (243)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCcchHHHHHHH
Confidence            4677777777777777777766554443

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=89.95  E-value=2.1  Score=27.59  Aligned_cols=27  Identities=15%  Similarity=0.250  Sum_probs=22.9

Q ss_pred             ChhhHHHHHHHHHHHhhCCCcHHHHHH
Q 026807            1 MEQYDDALSAFQTALQYNPQSAEVSRK   27 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs~EvsrK   27 (233)
                      +.+|++|+..|+.|++.+|.+.++-..
T Consensus        63 ~~~~~~A~~~~~~a~~~~~~~~~~~~~   89 (133)
T 2lni_A           63 LLEFQLALKDCEECIQLEPTFIKGYTR   89 (133)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hccHHHHHHHHHHHHHhCCCchHHHHH
Confidence            368999999999999999998776543

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=89.89  E-value=1.9  Score=28.99  Aligned_cols=29  Identities=21%  Similarity=0.415  Sum_probs=23.9

Q ss_pred             ChhhHHHHHHHHHHHhhCCCcHHHHHHHH
Q 026807            1 MEQYDDALSAFQTALQYNPQSAEVSRKIK   29 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs~EvsrKIk   29 (233)
                      +.+|++|+..|+.|++.+|.+.++-..+-
T Consensus        26 ~~~~~~A~~~~~~al~~~~~~~~~~~~~a   54 (166)
T 1a17_A           26 AKDYENAIKFYSQAIELNPSNAIYYGNRS   54 (166)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            35799999999999999999987655443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=89.83  E-value=0.98  Score=35.17  Aligned_cols=25  Identities=24%  Similarity=0.487  Sum_probs=15.4

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEVSR   26 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~Evsr   26 (233)
                      .+|++|+..|+.|++.+|.+.++-.
T Consensus       227 g~~~~A~~~~~~al~~~p~~~~~~~  251 (365)
T 4eqf_A          227 GEFNRAIDAFNAALTVRPEDYSLWN  251 (365)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            3566666666666666666655443

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=89.73  E-value=0.52  Score=37.75  Aligned_cols=24  Identities=29%  Similarity=0.632  Sum_probs=16.5

Q ss_pred             ChhhHHHHHHHHHHHhh-------CCCcHHH
Q 026807            1 MEQYDDALSAFQTALQY-------NPQSAEV   24 (233)
Q Consensus         1 me~y~dAlaafq~Alq~-------npqs~Ev   24 (233)
                      +.+|++||..|..||++       ||.....
T Consensus        70 Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A  100 (159)
T 2hr2_A           70 LRSFDEALHSADKALHYFNRRGELNQDEGKL  100 (159)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHCCTTSTHHHH
T ss_pred             CCCHHHHHHHHHHHHHhhhccccCCCchHHH
Confidence            35677777777777777       7766544

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=89.71  E-value=1.5  Score=28.70  Aligned_cols=23  Identities=13%  Similarity=0.254  Sum_probs=20.0

Q ss_pred             ChhhHHHHHHHHHHHhhCCCcHH
Q 026807            1 MEQYDDALSAFQTALQYNPQSAE   23 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs~E   23 (233)
                      +.+|++|+..|+.+++.+|.+..
T Consensus        52 ~~~~~~A~~~~~~~~~~~p~~~~   74 (129)
T 2xev_A           52 TRNFQLAEAQFRDLVSRYPTHDK   74 (129)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTSTT
T ss_pred             hccHHHHHHHHHHHHHHCCCCcc
Confidence            35899999999999999999943

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=89.22  E-value=1.9  Score=31.48  Aligned_cols=26  Identities=15%  Similarity=0.275  Sum_probs=21.8

Q ss_pred             hhhHHHHHHHHHHHhhCC-CcHHHHHH
Q 026807            2 EQYDDALSAFQTALQYNP-QSAEVSRK   27 (233)
Q Consensus         2 e~y~dAlaafq~Alq~np-qs~EvsrK   27 (233)
                      .+|++|+..|+.|++.+| ++..+...
T Consensus        21 ~~~~~A~~~~~~al~~~~~~~~~~~~~   47 (228)
T 4i17_A           21 KNYAVAFEKYSEYLKLTNNQDSVTAYN   47 (228)
T ss_dssp             TCHHHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred             cCHHHHHHHHHHHHhccCCCCcHHHHH
Confidence            589999999999999999 77765444

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=89.21  E-value=1.2  Score=33.38  Aligned_cols=24  Identities=29%  Similarity=0.570  Sum_probs=17.4

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEVS   25 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~Evs   25 (233)
                      .+|++|+..|+.+++.+|.+.++.
T Consensus       248 ~~~~~A~~~~~~~~~~~~~~~~~~  271 (359)
T 3ieg_A          248 GRYTDATSKYESVMKTEPSVAEYT  271 (359)
T ss_dssp             TCHHHHHHHHHHHHHHCCSSHHHH
T ss_pred             CCHHHHHHHHHHHHhcCCCchHHH
Confidence            467777777777777777776543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=89.18  E-value=0.88  Score=33.93  Aligned_cols=42  Identities=26%  Similarity=0.342  Sum_probs=30.3

Q ss_pred             ChhhHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHH
Q 026807            1 MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQ   42 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs~EvsrKIkrlsqL~k~kkra~   42 (233)
                      +.+|++|+..|+.|++.+|.+.++-..+-.+-....+-..|.
T Consensus       249 ~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~  290 (330)
T 3hym_B          249 LKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAV  290 (330)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHH
T ss_pred             hcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHH
Confidence            368999999999999999999887665554444333333443

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=89.12  E-value=1.7  Score=31.07  Aligned_cols=28  Identities=21%  Similarity=0.349  Sum_probs=23.4

Q ss_pred             ChhhHHHHHHHHHHHhhCCCcHHHHHHH
Q 026807            1 MEQYDDALSAFQTALQYNPQSAEVSRKI   28 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs~EvsrKI   28 (233)
                      +.+|++|+..|+.+++.+|.+.++-..+
T Consensus       104 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~  131 (243)
T 2q7f_A          104 KEMYKEAKDMFEKALRAGMENGDLFYML  131 (243)
T ss_dssp             TTCHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            3679999999999999999998765443

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=88.95  E-value=1.4  Score=37.80  Aligned_cols=26  Identities=15%  Similarity=0.167  Sum_probs=17.5

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHHHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEVSRK   27 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~EvsrK   27 (233)
                      .+|++|+..|+.|++.+|++.++-..
T Consensus        71 g~~~~A~~~~~~al~~~p~~~~~~~~   96 (568)
T 2vsy_A           71 QRHAEAAVLLQQASDAAPEHPGIALW   96 (568)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            46777777777777777777655443

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=88.72  E-value=1  Score=33.57  Aligned_cols=30  Identities=20%  Similarity=0.232  Sum_probs=25.8

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEVSRKIKRV   31 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~EvsrKIkrl   31 (233)
                      .+|++|+..|+.|++.+|.+.++-..+-.+
T Consensus       102 g~~~~A~~~~~~al~~~P~~~~a~~~lg~~  131 (208)
T 3urz_A          102 GQEKDALRMYEKILQLEADNLAANIFLGNY  131 (208)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            579999999999999999999877665544

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=88.64  E-value=0.13  Score=42.46  Aligned_cols=28  Identities=14%  Similarity=0.306  Sum_probs=23.2

Q ss_pred             ChhhHHHHHHHHHHHhhCCCcHHHHHHH
Q 026807            1 MEQYDDALSAFQTALQYNPQSAEVSRKI   28 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs~EvsrKI   28 (233)
                      +.+|++|+..|+.||+.+|.+...-..+
T Consensus       243 ~g~~~~A~~~~~~al~~~p~~~~a~~~l  270 (338)
T 2if4_A          243 LKRYDEAIGHCNIVLTEEEKNPKALFRR  270 (338)
T ss_dssp             TTCCHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            4689999999999999999987765443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=88.50  E-value=4.8  Score=28.09  Aligned_cols=27  Identities=19%  Similarity=0.244  Sum_probs=17.8

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHHHHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEVSRKI   28 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~EvsrKI   28 (233)
                      .+|++|+..|+.+++.+|.+.++-..+
T Consensus       127 ~~~~~A~~~~~~~~~~~~~~~~~~~~l  153 (225)
T 2vq2_A          127 GQFGLAEAYLKRSLAAQPQFPPAFKEL  153 (225)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCchHHHHH
Confidence            457777777777777777766554433

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=88.43  E-value=3.3  Score=33.12  Aligned_cols=27  Identities=11%  Similarity=0.164  Sum_probs=24.1

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHHHHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEVSRKI   28 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~EvsrKI   28 (233)
                      .+|++|+..|+.|++.||.+.+.-..+
T Consensus        16 ~~feeA~~~~~~Ai~l~P~~aea~~n~   42 (158)
T 1zu2_A           16 LLFEQIRQDAENTYKSNPLDADNLTRW   42 (158)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence            579999999999999999999987643

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=88.02  E-value=2.1  Score=31.91  Aligned_cols=22  Identities=27%  Similarity=0.208  Sum_probs=11.6

Q ss_pred             hhHHHHHHHHHHHhhCCCcHHH
Q 026807            3 QYDDALSAFQTALQYNPQSAEV   24 (233)
Q Consensus         3 ~y~dAlaafq~Alq~npqs~Ev   24 (233)
                      +|++|+..|+.|++.+|.+.++
T Consensus       140 ~~~~A~~~~~~a~~~~~~~~~~  161 (330)
T 3hym_B          140 EHDQAMAAYFTAAQLMKGCHLP  161 (330)
T ss_dssp             CHHHHHHHHHHHHHHTTTCSHH
T ss_pred             CHHHHHHHHHHHHHhccccHHH
Confidence            4555555555555555554444

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=87.57  E-value=2.9  Score=32.04  Aligned_cols=22  Identities=32%  Similarity=0.590  Sum_probs=12.2

Q ss_pred             hhHHHHHHHHHHHhhCCCcHHH
Q 026807            3 QYDDALSAFQTALQYNPQSAEV   24 (233)
Q Consensus         3 ~y~dAlaafq~Alq~npqs~Ev   24 (233)
                      +|++|+..|+.|++.+|.+.++
T Consensus       232 ~~~~A~~~~~~al~~~~~~~~~  253 (368)
T 1fch_A          232 EYDKAVDCFTAALSVRPNDYLL  253 (368)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHH
T ss_pred             CHHHHHHHHHHHHHhCcCCHHH
Confidence            4555555555555555555443

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=87.56  E-value=1.2  Score=32.07  Aligned_cols=39  Identities=15%  Similarity=0.285  Sum_probs=25.7

Q ss_pred             ChhhHHHHHHHHHHHhhC-----CCcHHHHHHHHHHHHHHHHHH
Q 026807            1 MEQYDDALSAFQTALQYN-----PQSAEVSRKIKRVSQLAKDKK   39 (233)
Q Consensus         1 me~y~dAlaafq~Alq~n-----pqs~EvsrKIkrlsqL~k~kk   39 (233)
                      +.+|++|+..|+.|++..     +.+.....-...|..+.....
T Consensus        56 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g   99 (283)
T 3edt_B           56 QNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG   99 (283)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTT
T ss_pred             cccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhc
Confidence            367999999999999885     444555555555555544433

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=87.50  E-value=3.1  Score=30.89  Aligned_cols=22  Identities=27%  Similarity=0.617  Sum_probs=10.5

Q ss_pred             hhHHHHHHHHHHHhhCCCcHHH
Q 026807            3 QYDDALSAFQTALQYNPQSAEV   24 (233)
Q Consensus         3 ~y~dAlaafq~Alq~npqs~Ev   24 (233)
                      +|++|+..|+.+++.+|.+.++
T Consensus       153 ~~~~A~~~~~~~~~~~~~~~~~  174 (327)
T 3cv0_A          153 EYRECRTLLHAALEMNPNDAQL  174 (327)
T ss_dssp             HHHHHHHHHHHHHHHSTTCHHH
T ss_pred             cHHHHHHHHHHHHhhCCCCHHH
Confidence            3444555555555555444433

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=87.48  E-value=2.2  Score=31.10  Aligned_cols=23  Identities=22%  Similarity=0.313  Sum_probs=12.9

Q ss_pred             hhHHHHHHHHHHHhhCCCcHHHH
Q 026807            3 QYDDALSAFQTALQYNPQSAEVS   25 (233)
Q Consensus         3 ~y~dAlaafq~Alq~npqs~Evs   25 (233)
                      +|++|+..|+.|++.+|.+.++-
T Consensus       156 ~~~~A~~~~~~~~~~~~~~~~~~  178 (252)
T 2ho1_A          156 KPAQAKEYFEKSLRLNRNQPSVA  178 (252)
T ss_dssp             CHHHHHHHHHHHHHHCSCCHHHH
T ss_pred             CHHHHHHHHHHHHhcCcccHHHH
Confidence            45556666666666555554443

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=87.31  E-value=1  Score=33.77  Aligned_cols=34  Identities=26%  Similarity=0.290  Sum_probs=27.5

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLA   35 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~EvsrKIkrlsqL~   35 (233)
                      .++++|+..|+.+++.+|+|..+..-..+|..+.
T Consensus       110 ~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~  143 (225)
T 2yhc_A          110 QQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLK  143 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHH
Confidence            4799999999999999999998766555555554

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=87.27  E-value=1.2  Score=28.22  Aligned_cols=26  Identities=15%  Similarity=0.314  Sum_probs=22.0

Q ss_pred             ChhhHHHHHHHHHHHhhCCCcHHHHH
Q 026807            1 MEQYDDALSAFQTALQYNPQSAEVSR   26 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs~Evsr   26 (233)
                      +.+|++|+..|+.|++.+|.+.++-.
T Consensus        59 ~~~~~~A~~~~~~~~~~~~~~~~~~~   84 (131)
T 2vyi_A           59 LGNYAGAVQDCERAICIDPAYSKAYG   84 (131)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             hhchHHHHHHHHHHHhcCccCHHHHH
Confidence            35799999999999999999876543

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=87.11  E-value=1.8  Score=30.87  Aligned_cols=28  Identities=14%  Similarity=0.171  Sum_probs=22.8

Q ss_pred             ChhhHHHHHHHHHHHhhCCCcHHHHHHH
Q 026807            1 MEQYDDALSAFQTALQYNPQSAEVSRKI   28 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs~EvsrKI   28 (233)
                      +.+|++|+..|+.|++.+|.+.++-..+
T Consensus        50 ~g~~~~A~~~~~~al~~~~~~~~~~~~l   77 (213)
T 1hh8_A           50 LKNMTEAEKAFTRSINRDKHLAVAYFQR   77 (213)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCccchHHHHHH
Confidence            3679999999999999999987765433

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=87.00  E-value=2  Score=33.36  Aligned_cols=28  Identities=7%  Similarity=0.137  Sum_probs=22.8

Q ss_pred             ChhhHHHHHHHHHHHhhCCC--cHHHHHHH
Q 026807            1 MEQYDDALSAFQTALQYNPQ--SAEVSRKI   28 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npq--s~EvsrKI   28 (233)
                      +.+|++|+..|+.|++.+|.  +.++-..+
T Consensus       190 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~l  219 (365)
T 4eqf_A          190 SSVLEGVKELYLEAAHQNGDMIDPDLQTGL  219 (365)
T ss_dssp             CHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence            36899999999999999999  66654433

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=86.91  E-value=0.96  Score=35.90  Aligned_cols=27  Identities=19%  Similarity=0.284  Sum_probs=17.7

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHHHHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEVSRKI   28 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~EvsrKI   28 (233)
                      .+|++|+..|+.|++.+|.+.++-..+
T Consensus       309 g~~~~A~~~~~~a~~~~p~~~~~~~~l  335 (450)
T 2y4t_A          309 EKPVEAIRVCSEVLQMEPDNVNALKDR  335 (450)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence            467777777777777777766554433

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=86.91  E-value=3.1  Score=30.89  Aligned_cols=28  Identities=25%  Similarity=0.343  Sum_probs=23.7

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHHHHHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEVSRKIK   29 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~EvsrKIk   29 (233)
                      .+|++|+..|+.+++.+|.+.++-..+-
T Consensus        35 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~   62 (327)
T 3cv0_A           35 ANLAEAALAFEAVCQAAPEREEAWRSLG   62 (327)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            5799999999999999999988765443

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=86.85  E-value=0.42  Score=39.35  Aligned_cols=34  Identities=24%  Similarity=0.528  Sum_probs=14.8

Q ss_pred             ChhhHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 026807            1 MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQL   34 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs~EvsrKIkrlsqL   34 (233)
                      +.+|++|+..|+.|++.+|.+.++...+.+|.+.
T Consensus       277 ~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~  310 (338)
T 2if4_A          277 LGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ  310 (338)
T ss_dssp             TTCHHHHHHHHHHTTC------------------
T ss_pred             cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            4689999999999999999999988877776443

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=86.77  E-value=0.67  Score=32.61  Aligned_cols=18  Identities=17%  Similarity=0.409  Sum_probs=8.9

Q ss_pred             hhHHHHHHHHHHHhhCCC
Q 026807            3 QYDDALSAFQTALQYNPQ   20 (233)
Q Consensus         3 ~y~dAlaafq~Alq~npq   20 (233)
                      +|++|+..|+.+|+.+|+
T Consensus        58 ~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A           58 RFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             CHHHHHHHHHHHHTCCCT
T ss_pred             CHHHHHHHHHHHHhhCCC
Confidence            445555555555555444

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=86.52  E-value=0.64  Score=36.87  Aligned_cols=21  Identities=33%  Similarity=0.594  Sum_probs=19.2

Q ss_pred             ChhhHHHHHHHHHHHhhCCCc
Q 026807            1 MEQYDDALSAFQTALQYNPQS   21 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs   21 (233)
                      +.+|++|+..|+.|++.+|.+
T Consensus        85 ~g~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           85 MESYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHHHHHhCccc
Confidence            468999999999999999976

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=86.48  E-value=1.5  Score=37.78  Aligned_cols=40  Identities=25%  Similarity=0.459  Sum_probs=28.1

Q ss_pred             ChhhHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHH
Q 026807            1 MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKR   40 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs~EvsrKIkrlsqL~k~kkr   40 (233)
                      +.+|++|+..|+.||+++|++.++-..+.++-+..++.++
T Consensus       364 ~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~  403 (457)
T 1kt0_A          364 MNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNE  403 (457)
T ss_dssp             TTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence            4689999999999999999999887777766655554433

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=86.06  E-value=2.4  Score=33.30  Aligned_cols=17  Identities=12%  Similarity=0.239  Sum_probs=11.3

Q ss_pred             HHHHHhhhhccCCCCce
Q 026807           85 METAVKSWHETSKVDAK  101 (233)
Q Consensus        85 ~e~Avk~whe~~kvd~~  101 (233)
                      .+.|++.+.....+||.
T Consensus       256 ~~~A~~~~~~~~~l~~~  272 (292)
T 1qqe_A          256 LSEHCKEFDNFMRLDKW  272 (292)
T ss_dssp             HHHHHHHHTTSSCCCHH
T ss_pred             HHHHHHHhccCCccHHH
Confidence            45677777666667663

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=86.03  E-value=3.9  Score=29.74  Aligned_cols=25  Identities=20%  Similarity=0.163  Sum_probs=15.2

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEVSR   26 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~Evsr   26 (233)
                      .+|++|+..|+.|++.+|.+.++-.
T Consensus        85 ~~~~~A~~~~~~a~~~~~~~~~~~~  109 (252)
T 2ho1_A           85 MEPKLADEEYRKALASDSRNARVLN  109 (252)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCcCcHHHHH
Confidence            3566666666666666666655443

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=85.99  E-value=1.2  Score=35.82  Aligned_cols=23  Identities=22%  Similarity=0.312  Sum_probs=15.1

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEV   24 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~Ev   24 (233)
                      .+|++|+..|+.||+.+|...+.
T Consensus       348 ~~~~~A~~~~~kaL~~~~~~~~~  370 (472)
T 4g1t_A          348 DQYEEAEYYFQKEFSKELTPVAK  370 (472)
T ss_dssp             TCHHHHHHHHHHHHHSCCCHHHH
T ss_pred             ccHHHHHHHHHHHHhcCCCChHH
Confidence            46677777777777776665543

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=85.98  E-value=1.5  Score=37.60  Aligned_cols=25  Identities=20%  Similarity=0.267  Sum_probs=14.4

Q ss_pred             hhhHHHHHHHHHHHhhCC---CcHHHHH
Q 026807            2 EQYDDALSAFQTALQYNP---QSAEVSR   26 (233)
Q Consensus         2 e~y~dAlaafq~Alq~np---qs~Evsr   26 (233)
                      .+|++|+..|+.|++.+|   .+.++-.
T Consensus       235 g~~~~A~~~~~~al~~~p~~~~~~~~~~  262 (474)
T 4abn_A          235 KISQQALSAYAQAEKVDRKASSNPDLHL  262 (474)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGGGCHHHHH
T ss_pred             chHHHHHHHHHHHHHhCCCcccCHHHHH
Confidence            356666666666666666   5554433

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=85.78  E-value=2.1  Score=40.49  Aligned_cols=22  Identities=23%  Similarity=0.496  Sum_probs=10.6

Q ss_pred             hhHHHHHHHHHHHhhCCCcHHH
Q 026807            3 QYDDALSAFQTALQYNPQSAEV   24 (233)
Q Consensus         3 ~y~dAlaafq~Alq~npqs~Ev   24 (233)
                      +|++|+..|+.||++||++.+.
T Consensus        58 ~~~eA~~~~~~Al~l~P~~~~a   79 (723)
T 4gyw_A           58 KLQEALMHYKEAIRISPTFADA   79 (723)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHH
Confidence            4444555555555555444443

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=85.55  E-value=2.8  Score=39.66  Aligned_cols=27  Identities=30%  Similarity=0.495  Sum_probs=22.6

Q ss_pred             ChhhHHHHHHHHHHHhhCCCcHHHHHH
Q 026807            1 MEQYDDALSAFQTALQYNPQSAEVSRK   27 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs~EvsrK   27 (233)
                      +.+|++|+..|+.|+++||.+.+.-..
T Consensus        90 ~g~~~~A~~~~~kAl~l~P~~~~a~~~  116 (723)
T 4gyw_A           90 MQDVQGALQCYTRAIQINPAFADAHSN  116 (723)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            468999999999999999999876543

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=85.36  E-value=3.7  Score=31.42  Aligned_cols=28  Identities=21%  Similarity=0.345  Sum_probs=23.2

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHHHHHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEVSRKIK   29 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~EvsrKIk   29 (233)
                      .+|++|+..|+.|++.+|.+.++-..+-
T Consensus        78 g~~~~A~~~~~~al~~~p~~~~~~~~l~  105 (368)
T 1fch_A           78 GDLPNAVLLFEAAVQQDPKHMEAWQYLG  105 (368)
T ss_dssp             TCHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            5799999999999999999987655443

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=85.17  E-value=6.6  Score=28.21  Aligned_cols=38  Identities=16%  Similarity=0.354  Sum_probs=24.7

Q ss_pred             ChhhHHHHHHHHHHHhhC-----CCcHHHHHHHHHHHHHHHHH
Q 026807            1 MEQYDDALSAFQTALQYN-----PQSAEVSRKIKRVSQLAKDK   38 (233)
Q Consensus         1 me~y~dAlaafq~Alq~n-----pqs~EvsrKIkrlsqL~k~k   38 (233)
                      +.+|++|+..|+.|++..     |.+.....-.-.|..+....
T Consensus        98 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~  140 (283)
T 3edt_B           98 RGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQ  140 (283)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTT
T ss_pred             hccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHc
Confidence            368999999999999983     44444444444455444433

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=84.80  E-value=1.5  Score=32.92  Aligned_cols=35  Identities=6%  Similarity=0.136  Sum_probs=27.1

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAK   36 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~EvsrKIkrlsqL~k   36 (233)
                      .+|++|+..|+.+++.+|++..+..-.-+|.....
T Consensus       161 ~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~  195 (225)
T 2yhc_A          161 GAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYR  195 (225)
T ss_dssp             TCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHH
Confidence            57999999999999999999876555555544443

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=84.73  E-value=2.2  Score=36.57  Aligned_cols=28  Identities=18%  Similarity=0.215  Sum_probs=23.5

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHHHHHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEVSRKIK   29 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~EvsrKIk   29 (233)
                      .+|++|+..|+.|++.+|.+.++-..+-
T Consensus        37 g~~~~A~~~~~~al~~~p~~~~~~~~lg   64 (568)
T 2vsy_A           37 GDTTAGEMAVQRGLALHPGHPEAVARLG   64 (568)
T ss_dssp             TCHHHHHHHHHHHHTTSTTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            5799999999999999999987755443

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=84.36  E-value=7  Score=28.75  Aligned_cols=40  Identities=15%  Similarity=0.379  Sum_probs=26.1

Q ss_pred             ChhhHHHHHHHHHHHhhC-----CCcHHHHHHHHHHHHHHHHHHH
Q 026807            1 MEQYDDALSAFQTALQYN-----PQSAEVSRKIKRVSQLAKDKKR   40 (233)
Q Consensus         1 me~y~dAlaafq~Alq~n-----pqs~EvsrKIkrlsqL~k~kkr   40 (233)
                      +.+|++|+..|+.|++..     +.+.....-.-.|..+.....+
T Consensus       124 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~  168 (311)
T 3nf1_A          124 RGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGK  168 (311)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTC
T ss_pred             cCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCC
Confidence            467999999999999985     4445555444455554444333

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=83.89  E-value=6.1  Score=29.66  Aligned_cols=34  Identities=12%  Similarity=0.228  Sum_probs=25.2

Q ss_pred             ChhhHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 026807            1 MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQL   34 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs~EvsrKIkrlsqL   34 (233)
                      +.+|++|+..|+.+++.+|.+.....-.-.|..+
T Consensus       161 ~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~  194 (261)
T 3qky_A          161 RELYEAAAVTYEAVFDAYPDTPWADDALVGAMRA  194 (261)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHH
Confidence            4689999999999999999976554444444443

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=83.88  E-value=1.6  Score=31.30  Aligned_cols=26  Identities=19%  Similarity=0.114  Sum_probs=17.4

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHHHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEVSRK   27 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~EvsrK   27 (233)
                      .+|++|+..|+.|++.+|.+.++-.-
T Consensus        20 g~~~~A~~~~~~al~~~P~~~~a~~~   45 (176)
T 2r5s_A           20 GEHAQALNVIQTLSDELQSRGDVKLA   45 (176)
T ss_dssp             TCHHHHHHHHHTSCHHHHTSHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCcHHHHHH
Confidence            45677777777777777777665443

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=83.78  E-value=8  Score=29.00  Aligned_cols=31  Identities=19%  Similarity=0.299  Sum_probs=25.0

Q ss_pred             ChhhHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 026807            1 MEQYDDALSAFQTALQYNPQSAEVSRKIKRV   31 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs~EvsrKIkrl   31 (233)
                      +.+|++|+..|+.+++.+|.+..+..-..++
T Consensus       110 ~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~  140 (261)
T 3qky_A          110 QTDTRKAIEAFQLFIDRYPNHELVDDATQKI  140 (261)
T ss_dssp             CHHHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHCcCchhHHHHHHHH
Confidence            4689999999999999999997766544444

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=83.55  E-value=12  Score=27.93  Aligned_cols=27  Identities=22%  Similarity=0.260  Sum_probs=17.0

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHHHHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEVSRKI   28 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~EvsrKI   28 (233)
                      .+|++|+..|+.+++.+|.+.++-..+
T Consensus       168 ~~~~~A~~~~~~~~~~~~~~~~~~~~l  194 (359)
T 3ieg_A          168 GEPRKAISDLKAASKLKSDNTEAFYKI  194 (359)
T ss_dssp             TCHHHHHHHHHHHHTTCSCCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            456667777777777666666554433

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=83.50  E-value=7.6  Score=33.30  Aligned_cols=28  Identities=11%  Similarity=0.038  Sum_probs=23.9

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHHHHHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEVSRKIK   29 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~EvsrKIk   29 (233)
                      .+|++|+..|+.|++.+|.+.++-..+-
T Consensus       193 g~~~~A~~~~~~al~~~p~~~~~~~~lg  220 (474)
T 4abn_A          193 RHVMDSVRQAKLAVQMDVLDGRSWYILG  220 (474)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            6899999999999999999988655443

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=83.32  E-value=2.4  Score=31.25  Aligned_cols=38  Identities=18%  Similarity=0.329  Sum_probs=25.0

Q ss_pred             ChhhHHHHHHHHHHHhhC-----CCcHHHHHHHHHHHHHHHHH
Q 026807            1 MEQYDDALSAFQTALQYN-----PQSAEVSRKIKRVSQLAKDK   38 (233)
Q Consensus         1 me~y~dAlaafq~Alq~n-----pqs~EvsrKIkrlsqL~k~k   38 (233)
                      +.+|++|+..|+.|++..     +.+.....-.-.|..+....
T Consensus        82 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~  124 (311)
T 3nf1_A           82 QNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKR  124 (311)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHc
Confidence            358999999999999984     33444444444555544433

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=83.25  E-value=3.3  Score=36.13  Aligned_cols=26  Identities=23%  Similarity=0.501  Sum_probs=19.7

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHHHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEVSRK   27 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~EvsrK   27 (233)
                      .+|++|+..|+.|++.+|.+.++-..
T Consensus        20 g~~~~A~~~~~~Al~~~p~~~~~~~~   45 (477)
T 1wao_1           20 KDYENAIKFYSQAIELNPSNAIYYGN   45 (477)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCccHHHHHH
Confidence            57888888888888888887665443

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=83.04  E-value=11  Score=27.39  Aligned_cols=23  Identities=17%  Similarity=0.277  Sum_probs=20.6

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEV   24 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~Ev   24 (233)
                      .+|++|+..|+.|++.+|.+.+.
T Consensus        19 g~~~~A~~~~~~al~~~~~~~~~   41 (338)
T 3ro2_A           19 GDCRAGVSFFEAAVQVGTEDLKT   41 (338)
T ss_dssp             TCHHHHHHHHHHHHHHCCSCHHH
T ss_pred             ccHHHHHHHHHHHHhhCcccHHH
Confidence            57999999999999999998653

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=82.94  E-value=3.1  Score=29.23  Aligned_cols=27  Identities=11%  Similarity=0.100  Sum_probs=22.3

Q ss_pred             hhh--HHHHHHHHHHHhhCCCcHHHHHHH
Q 026807            2 EQY--DDALSAFQTALQYNPQSAEVSRKI   28 (233)
Q Consensus         2 e~y--~dAlaafq~Alq~npqs~EvsrKI   28 (233)
                      .+|  ++|+..|+.|++.+|.+.++-.-+
T Consensus        93 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l  121 (177)
T 2e2e_A           93 SQHMTAQTRAMIDKALALDSNEITALMLL  121 (177)
T ss_dssp             TTCCCHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCcchHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            466  999999999999999998765443

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=82.54  E-value=1.9  Score=31.70  Aligned_cols=29  Identities=17%  Similarity=0.220  Sum_probs=19.8

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEVSRKIKR   30 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~EvsrKIkr   30 (233)
                      .+|++|+..|+.|++.+|.+.++-..+-.
T Consensus        88 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~  116 (272)
T 3u4t_A           88 GQDSLAIQQYQAAVDRDTTRLDMYGQIGS  116 (272)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCTHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence            46777777777777777777766544433

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=82.34  E-value=2  Score=31.35  Aligned_cols=27  Identities=22%  Similarity=0.379  Sum_probs=20.2

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHHHHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEVSRKI   28 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~EvsrKI   28 (233)
                      .+|++|+..|+.|++.+|.+.++-..+
T Consensus        91 ~~~~~A~~~~~~al~~~~~~~~~~~~l  117 (275)
T 1xnf_A           91 GNFDAAYEAFDSVLELDPTYNYAHLNR  117 (275)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred             cCHHHHHHHHHHHHhcCccccHHHHHH
Confidence            568888888888888888877665443

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=82.29  E-value=1.2  Score=38.85  Aligned_cols=33  Identities=15%  Similarity=0.437  Sum_probs=21.0

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQL   34 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~EvsrKIkrlsqL   34 (233)
                      .+|++|+..|+.|++.+|.+.+....+..+.++
T Consensus        88 g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~  120 (477)
T 1wao_1           88 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKI  120 (477)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            467777777777777777776665555554333

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=82.08  E-value=6.7  Score=30.75  Aligned_cols=22  Identities=14%  Similarity=0.074  Sum_probs=10.4

Q ss_pred             hhHHHHHHHHHHHhhCCCcHHH
Q 026807            3 QYDDALSAFQTALQYNPQSAEV   24 (233)
Q Consensus         3 ~y~dAlaafq~Alq~npqs~Ev   24 (233)
                      ++++|+.+|+.|++.+|.+.++
T Consensus       149 ~~~~A~~~~~~a~~~~p~~~~~  170 (308)
T 2ond_A          149 GIKSGRMIFKKAREDARTRHHV  170 (308)
T ss_dssp             CHHHHHHHHHHHHTSTTCCTHH
T ss_pred             CHHHHHHHHHHHHhcCCCCHHH
Confidence            3444555555555544444433

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=81.95  E-value=2.3  Score=33.52  Aligned_cols=25  Identities=16%  Similarity=0.307  Sum_probs=19.5

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEVSR   26 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~Evsr   26 (233)
                      .+|++|+..|+.|++.+|.+.++-.
T Consensus       251 g~~~~A~~~~~~al~~~p~~~~~~~  275 (388)
T 1w3b_A          251 GLIDLAIDTYRRAIELQPHFPDAYC  275 (388)
T ss_dssp             TCHHHHHHHHHHHHHTCSSCHHHHH
T ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHH
Confidence            5688888888888888888777643

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=80.97  E-value=2.2  Score=33.73  Aligned_cols=29  Identities=28%  Similarity=0.405  Sum_probs=24.1

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEVSRKIKR   30 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~EvsrKIkr   30 (233)
                      .+|++|++.|+.||+.+|.+.+.-.-+-+
T Consensus       131 g~~~~A~~~~~~al~~~P~~~~a~~~la~  159 (287)
T 3qou_A          131 SNYTDALPLLXDAWQLSNQNGEIGLLLAE  159 (287)
T ss_dssp             TCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCcchhHHHHHHH
Confidence            47999999999999999999887554443

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=80.94  E-value=6.4  Score=33.33  Aligned_cols=25  Identities=16%  Similarity=0.092  Sum_probs=17.9

Q ss_pred             hhHHHHHHHHHHHhhCCCcHHHHHH
Q 026807            3 QYDDALSAFQTALQYNPQSAEVSRK   27 (233)
Q Consensus         3 ~y~dAlaafq~Alq~npqs~EvsrK   27 (233)
                      ++++|+..|+.||+.+|.+.++-..
T Consensus       406 ~~~~A~~~~e~al~~~p~~~~~~~~  430 (530)
T 2ooe_A          406 DKSVAFKIFELGLKKYGDIPEYVLA  430 (530)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             ChhHHHHHHHHHHHHCCCCHHHHHH
Confidence            5677777788888777777766543

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=80.70  E-value=19  Score=28.42  Aligned_cols=30  Identities=17%  Similarity=0.210  Sum_probs=18.4

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEVSRKIKRV   31 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~EvsrKIkrl   31 (233)
                      .+|++|+..|+.|++.+|.+.....-+.++
T Consensus       225 g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~  254 (450)
T 2y4t_A          225 GDHELSLSEVRECLKLDQDHKRCFAHYKQV  254 (450)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence            456677777777777777666655444333

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=80.58  E-value=2.2  Score=30.44  Aligned_cols=22  Identities=27%  Similarity=0.304  Sum_probs=19.6

Q ss_pred             ChhhHHHHHHHHHHHhhCCCcH
Q 026807            1 MEQYDDALSAFQTALQYNPQSA   22 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs~   22 (233)
                      +.+|++|+..|+.|++.+|.+.
T Consensus        84 ~~~~~~A~~~~~~al~~~~~~~  105 (213)
T 1hh8_A           84 TEKYDLAIKDLKEALIQLRGNQ  105 (213)
T ss_dssp             TTCHHHHHHHHHHHHHTTTTCS
T ss_pred             cccHHHHHHHHHHHHHhCCCcc
Confidence            4689999999999999988766

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	233
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	96.63
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	96.25
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	96.21
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	95.87
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	95.8
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	95.56
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	95.19
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	95.16
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	95.05
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	94.5
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	94.09
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	93.55
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	93.15
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	92.89
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	92.57
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	92.32
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	91.74
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	91.16
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	90.85
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	90.56
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	90.54
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	89.18
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	89.09
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	88.73
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	88.26
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	88.19
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	87.52
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	86.13
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	84.92
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	84.14
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	83.9
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	82.54
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	80.57
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	80.42

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.0019  Score=47.04  Aligned_cols=37  Identities=19%  Similarity=0.329  Sum_probs=24.7

Q ss_pred             ChhhHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH
Q 026807            1 MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKD   37 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs~EvsrKIkrlsqL~k~   37 (233)
                      |.+|++|+..|+.|++++|++.++.+.|..+.+..++
T Consensus       109 ~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~  145 (170)
T d1p5qa1         109 VNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRR  145 (170)
T ss_dssp             TTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            4567777777777777777777776666665544433

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=96.25  E-value=0.0043  Score=44.65  Aligned_cols=31  Identities=23%  Similarity=0.408  Sum_probs=17.7

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEVSRKIKRVS   32 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~EvsrKIkrls   32 (233)
                      .+|++|+..|+.|++++|+++++...+..+.
T Consensus       112 ~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  142 (168)
T d1kt1a1         112 NEFESAKGDFEKVLEVNPQNKAARLQIFMCQ  142 (168)
T ss_dssp             TCHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            4566666666666666666665555544443

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.21  E-value=0.0031  Score=42.27  Aligned_cols=34  Identities=18%  Similarity=0.288  Sum_probs=28.7

Q ss_pred             ChhhHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 026807            1 MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQL   34 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs~EvsrKIkrlsqL   34 (233)
                      +.+|++|+..|+.||++||.+.++-.-+..+.++
T Consensus        59 ~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~~~~~   92 (95)
T d1tjca_          59 QGDLDKALLLTKKLLELDPEHQRANGNLKYFEYI   92 (95)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             cCChHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence            3589999999999999999999988777666554

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.87  E-value=0.012  Score=41.25  Aligned_cols=26  Identities=19%  Similarity=0.146  Sum_probs=20.2

Q ss_pred             ChhhHHHHHHHHHHHhhCCCcHHHHH
Q 026807            1 MEQYDDALSAFQTALQYNPQSAEVSR   26 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs~Evsr   26 (233)
                      |.+|++|+..|+.||++||++.++-.
T Consensus        57 ~~~~~~A~~~~~kal~~~p~~~~a~~   82 (159)
T d1a17a_          57 TECYGYALGDATRAIELDKKYIKGYY   82 (159)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             ccccchHHHHHHHHHHHcccchHHHH
Confidence            46788888888888888888876643

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.80  E-value=0.092  Score=37.23  Aligned_cols=29  Identities=10%  Similarity=0.169  Sum_probs=24.7

Q ss_pred             ChhhHHHHHHHHHHHhhCCCcHHHHHHHH
Q 026807            1 MEQYDDALSAFQTALQYNPQSAEVSRKIK   29 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs~EvsrKIk   29 (233)
                      |.+|++|+..|+.|++.||++.++-...-
T Consensus        10 ~~~fe~A~~~~e~al~~~P~~~~~~~~~g   38 (145)
T d1zu2a1          10 ILLFEQIRQDAENTYKSNPLDADNLTRWG   38 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HccHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence            46799999999999999999998765443

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.56  E-value=0.038  Score=37.52  Aligned_cols=30  Identities=20%  Similarity=0.401  Sum_probs=25.2

Q ss_pred             ChhhHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 026807            1 MEQYDDALSAFQTALQYNPQSAEVSRKIKR   30 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs~EvsrKIkr   30 (233)
                      +.+|++|+..|+.|+++||.+.++-..+-.
T Consensus        16 ~g~~~eAi~~~~~al~~~p~~~~~~~~~a~   45 (117)
T d1elwa_          16 VGNIDDALQCYSEAIKLDPHNHVLYSNRSA   45 (117)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhcCCcchhhhhcccc
Confidence            368999999999999999999987655443

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.19  E-value=0.016  Score=38.59  Aligned_cols=65  Identities=14%  Similarity=0.101  Sum_probs=42.9

Q ss_pred             ChhhHHHHHHHHHHHhhCCCcHH-----------HHHHHHHHHHHHHHHHHHHHHHHhhhh-hHHHHhHHHHHHHHH
Q 026807            1 MEQYDDALSAFQTALQYNPQSAE-----------VSRKIKRVSQLAKDKKRAQEVENIRSN-VDMVQHLDEFKSEMS   65 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs~E-----------vsrKIkrlsqL~k~kkra~even~rsn-vd~ak~L~~lk~em~   65 (233)
                      +.+|++|+..|+.||+.+|.+.+           ++.--.++.++.+-.+.-+++..+..| .++..||..+...|+
T Consensus        18 ~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~~~~~l~   94 (95)
T d1tjca_          18 EADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYFEYIMA   94 (95)
T ss_dssp             TTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            35799999999999999765432           233334444555555555555555555 666678888887775

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=95.16  E-value=0.052  Score=38.42  Aligned_cols=23  Identities=13%  Similarity=0.289  Sum_probs=14.4

Q ss_pred             ChhhHHHHHHHHHHHhhCCCcHH
Q 026807            1 MEQYDDALSAFQTALQYNPQSAE   23 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs~E   23 (233)
                      |.+|++|+..|+.||++||.+..
T Consensus        80 l~~~~~Al~~~~~al~~~p~~~k  102 (153)
T d2fbna1          80 NKDYPKAIDHASKVLKIDKNNVK  102 (153)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHH
T ss_pred             hcccchhhhhhhccccccchhhh
Confidence            34566666666666666666654

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.05  E-value=0.041  Score=38.92  Aligned_cols=24  Identities=21%  Similarity=0.473  Sum_probs=15.3

Q ss_pred             ChhhHHHHHHHHHHHhhCCCcHHH
Q 026807            1 MEQYDDALSAFQTALQYNPQSAEV   24 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs~Ev   24 (233)
                      |.+|++|+..|+.||+.+|.+.+.
T Consensus        90 ~~~~~~Ai~~~~~al~~~p~~~~a  113 (169)
T d1ihga1          90 MSDWQGAVDSCLEALEIDPSNTKA  113 (169)
T ss_dssp             TTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred             hcccchhhhhhhhhhhhhhhhhhH
Confidence            345666666666666666666554

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=94.50  E-value=0.062  Score=36.24  Aligned_cols=26  Identities=27%  Similarity=0.364  Sum_probs=20.1

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHHHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEVSRK   27 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~EvsrK   27 (233)
                      .+|++|+..|+.|++.||.+.+.-..
T Consensus        30 g~~~~A~~~~~~al~~~p~~~~a~~~   55 (112)
T d1hxia_          30 ANLAEAALAFEAVCQKEPEREEAWRS   55 (112)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             hhhHHHHHHHhhhcccccccchhhhh
Confidence            46888888888888888888765443

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.09  E-value=0.11  Score=36.21  Aligned_cols=29  Identities=21%  Similarity=0.398  Sum_probs=21.6

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEVSRKIKR   30 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~EvsrKIkr   30 (233)
                      .+|++|+..|+.|+++||.+.+.-..+-.
T Consensus        24 ~~y~~A~~~~~~al~~~p~~~~~~~~lg~   52 (159)
T d1a17a_          24 KDYENAIKFYSQAIELNPSNAIYYGNRSL   52 (159)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             CCHHHHHHHhhhccccchhhhhhhhhhHH
Confidence            46888888888888888888776555443

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.55  E-value=0.26  Score=35.22  Aligned_cols=80  Identities=11%  Similarity=0.190  Sum_probs=44.1

Q ss_pred             ChhhHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH----HHHhh-hhhHHHHhHHHHHHHHHHh-hcchhhh
Q 026807            1 MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQE----VENIR-SNVDMVQHLDEFKSEMSEK-YGAEECW   74 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs~EvsrKIkrlsqL~k~kkra~e----ven~r-snvd~ak~L~~lk~em~~~-~G~~e~~   74 (233)
                      +.+|++|+..|+.||++||++...-..+-.+-....+-..|.+    +..+- .|.++...|..+...+.+. --..+..
T Consensus        75 ~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~  154 (170)
T d1p5qa1          75 LQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLY  154 (170)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4689999999999999999998764433332221122222222    22222 3566666666665544321 1223445


Q ss_pred             hHhHHH
Q 026807           75 KHVFSF   80 (233)
Q Consensus        75 k~~fsF   80 (233)
                      +.||.=
T Consensus       155 ~~~f~~  160 (170)
T d1p5qa1         155 ANMFER  160 (170)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            566643

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.15  E-value=0.17  Score=37.03  Aligned_cols=27  Identities=22%  Similarity=0.372  Sum_probs=23.0

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHHHHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEVSRKI   28 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~EvsrKI   28 (233)
                      .+|++|+..|+.|++.||.+.+.-..+
T Consensus        33 g~~~~A~~~~~~al~~~P~~~~a~~~l   59 (323)
T d1fcha_          33 GDLPNAVLLFEAAVQQDPKHMEAWQYL   59 (323)
T ss_dssp             TCHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            579999999999999999998765443

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=92.89  E-value=0.18  Score=35.65  Aligned_cols=25  Identities=28%  Similarity=0.231  Sum_probs=20.5

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEVSR   26 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~Evsr   26 (233)
                      .+|++|+..|+.||++||.+.++-.
T Consensus        51 g~~~~A~~~~~~al~l~p~~~~a~~   75 (259)
T d1xnfa_          51 GLRALARNDFSQALAIRPDMPEVFN   75 (259)
T ss_dssp             TCHHHHHHHHHHHHHHCCCCHHHHH
T ss_pred             CCHHHHHHHHHHhhccCCCCHHHHh
Confidence            5788999999999999998877643

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.57  E-value=0.21  Score=34.19  Aligned_cols=26  Identities=23%  Similarity=0.369  Sum_probs=21.1

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHHHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEVSRK   27 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~EvsrK   27 (233)
                      .+|++|+..|+.||+.||.+..+-..
T Consensus        18 g~~~~Ai~~~~kal~~~p~~~~~~~~   43 (201)
T d2c2la1          18 RKYPEAAACYGRAITRNPLVAVYYTN   43 (201)
T ss_dssp             TCHHHHHHHHHHHHHHCSCCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHh
Confidence            57899999999999999988876443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.32  E-value=0.62  Score=31.62  Aligned_cols=25  Identities=20%  Similarity=0.434  Sum_probs=22.0

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEVSR   26 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~Evsr   26 (233)
                      .+|++|+..|+.||+++|.+.++-.
T Consensus        18 ~~y~~Ai~~y~~al~~~p~~~~~~~   42 (128)
T d1elra_          18 KDFDTALKHYDKAKELDPTNMTYIT   42 (128)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCcccHHHHH
Confidence            5799999999999999999877644

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=91.74  E-value=0.42  Score=33.78  Aligned_cols=24  Identities=17%  Similarity=0.347  Sum_probs=22.0

Q ss_pred             ChhhHHHHHHHHHHHhhCCCcHHH
Q 026807            1 MEQYDDALSAFQTALQYNPQSAEV   24 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs~Ev   24 (233)
                      |.+|++|+..|+.||+.||.+...
T Consensus        77 l~~~~~Ai~~~~~al~l~p~~~~a  100 (168)
T d1kt1a1          77 LREYTKAVECCDKALGLDSANEKG  100 (168)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             hhhcccchhhhhhhhhcccchHHH
Confidence            678999999999999999999765

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.16  E-value=0.39  Score=34.23  Aligned_cols=25  Identities=16%  Similarity=0.307  Sum_probs=17.2

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEVSR   26 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~Evsr   26 (233)
                      .+|++|+..|+.|++.+|.+.++-.
T Consensus       251 ~~~~~A~~~~~~al~~~p~~~~~~~  275 (388)
T d1w3ba_         251 GLIDLAIDTYRRAIELQPHFPDAYC  275 (388)
T ss_dssp             TCHHHHHHHHHHHHHTCSSCHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            4577777777777777777766543

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.85  E-value=0.22  Score=33.51  Aligned_cols=24  Identities=13%  Similarity=0.140  Sum_probs=17.2

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEVS   25 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~Evs   25 (233)
                      .+|++|+..|..|++.+|.+.+.-
T Consensus        51 ~~~~~A~~~~~~al~~~p~~~~~~   74 (117)
T d1elwa_          51 GDYQKAYEDGCKTVDLKPDWGKGY   74 (117)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             ccccccchhhhhHHHhccchhhHH
Confidence            467777777777777777777653

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.56  E-value=0.24  Score=33.92  Aligned_cols=25  Identities=32%  Similarity=0.424  Sum_probs=22.1

Q ss_pred             ChhhHHHHHHHHHHHhhCCCcHHHH
Q 026807            1 MEQYDDALSAFQTALQYNPQSAEVS   25 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs~Evs   25 (233)
                      +.+|++|+..|+.|++++|.+.+.-
T Consensus        51 ~~~~~~Ai~~~~~al~l~p~~~~a~   75 (201)
T d2c2la1          51 MQQPEQALADCRRALELDGQSVKAH   75 (201)
T ss_dssp             TTCHHHHHHHHHHHTTSCTTCHHHH
T ss_pred             hhhhhhhhHHHHHHHHhCCCcHHHH
Confidence            4689999999999999999998763

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.54  E-value=0.23  Score=35.46  Aligned_cols=25  Identities=24%  Similarity=0.210  Sum_probs=19.3

Q ss_pred             ChhhHHHHHHHHHHHhhCCCcHHHH
Q 026807            1 MEQYDDALSAFQTALQYNPQSAEVS   25 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs~Evs   25 (233)
                      +.+|++|+..|+.|++.||.+.+.-
T Consensus        46 ~~~~~~A~~~~~~al~~~p~~~~a~   70 (388)
T d1w3ba_          46 CRRLDRSAHFSTLAIKQNPLLAEAY   70 (388)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            3578888888888888888887653

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.18  E-value=0.45  Score=36.93  Aligned_cols=41  Identities=20%  Similarity=0.187  Sum_probs=29.1

Q ss_pred             ChhhHHHHHHHHHHHhhCCCcHHHHHHHH-HHHHHHHHHHHH
Q 026807            1 MEQYDDALSAFQTALQYNPQSAEVSRKIK-RVSQLAKDKKRA   41 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs~EvsrKIk-rlsqL~k~kkra   41 (233)
                      .|+|++||..|+.|++.||++.++=.-.. -|.+|.++-..|
T Consensus        56 ~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~ea   97 (315)
T d2h6fa1          56 DERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEE   97 (315)
T ss_dssp             TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHH
T ss_pred             CCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHH
Confidence            37899999999999999999998843333 334444443333

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=89.09  E-value=0.26  Score=34.86  Aligned_cols=28  Identities=21%  Similarity=0.357  Sum_probs=23.3

Q ss_pred             ChhhHHHHHHHHHHHhhCCCcHHHHHHH
Q 026807            1 MEQYDDALSAFQTALQYNPQSAEVSRKI   28 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs~EvsrKI   28 (233)
                      +.+|++|+..|+.|++.+|.+.+.-..+
T Consensus        84 ~g~~~~A~~~~~~al~~~p~~~~a~~~l  111 (259)
T d1xnfa_          84 AGNFDAAYEAFDSVLELDPTYNYAHLNR  111 (259)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred             HHHHHHhhhhhhHHHHHHhhhhhhHHHH
Confidence            4689999999999999999988764433

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.73  E-value=0.62  Score=32.71  Aligned_cols=24  Identities=25%  Similarity=0.506  Sum_probs=21.5

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEVS   25 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~Evs   25 (233)
                      +++++|+..|+.|++.||++.+.-
T Consensus        55 ~~~~~Ai~~~~kAl~l~P~~~~a~   78 (145)
T d1zu2a1          55 QMIQEAITKFEEALLIDPKKDEAV   78 (145)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHhcchhhHHH
Confidence            568999999999999999998764

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=88.26  E-value=1.5  Score=29.08  Aligned_cols=42  Identities=17%  Similarity=0.132  Sum_probs=31.7

Q ss_pred             ChhhHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHH
Q 026807            1 MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQ   42 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs~EvsrKIkrlsqL~k~kkra~   42 (233)
                      +.+|++|+..|+.|++.+|.+.++--.+-.+-.-..+-..|.
T Consensus        63 ~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~~~A~  104 (112)
T d1hxia_          63 NEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAAL  104 (112)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHhhcccccccccccccccchHHHHHHHHHCCCHHHHH
Confidence            578999999999999999999998766555444444444443

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.19  E-value=0.13  Score=36.17  Aligned_cols=29  Identities=14%  Similarity=0.029  Sum_probs=24.8

Q ss_pred             ChhhHHHHHHHHHHHhhCCCcHHHHHHHH
Q 026807            1 MEQYDDALSAFQTALQYNPQSAEVSRKIK   29 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs~EvsrKIk   29 (233)
                      ++.|++|...|+.||+.||.+.++--..-
T Consensus        12 ~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a   40 (122)
T d1nzna_          12 VEDLLKFEKKFQSEKAAGSVSKSTQFEYA   40 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence            47899999999999999999999765443

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.52  E-value=0.19  Score=36.79  Aligned_cols=26  Identities=15%  Similarity=0.195  Sum_probs=22.9

Q ss_pred             ChhhHHHHHHHHHHHhhCCCcHHHHH
Q 026807            1 MEQYDDALSAFQTALQYNPQSAEVSR   26 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs~Evsr   26 (233)
                      |.+|++|+..|+.|++.||.+...--
T Consensus        49 ~g~~~~A~~~~~kAl~ldp~~~~a~~   74 (192)
T d1hh8a_          49 LKNMTEAEKAFTRSINRDKHLAVAYF   74 (192)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             cCCchhHHHHHHHHHHHhhhhhhhHH
Confidence            57899999999999999999987543

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.13  E-value=0.63  Score=33.88  Aligned_cols=28  Identities=29%  Similarity=0.477  Sum_probs=22.5

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHHHHHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEVSRKIK   29 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~EvsrKIk   29 (233)
                      .+|++|+..|+.|++.+|.+.++-..+-
T Consensus       186 ~~~~~A~~~~~~al~~~p~~~~~~~~lg  213 (323)
T d1fcha_         186 GEYDKAVDCFTAALSVRPNDYLLWNKLG  213 (323)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHhhhhcccccccccccccccchhhhh
Confidence            5789999999999999999888655443

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=84.92  E-value=2.2  Score=29.39  Aligned_cols=21  Identities=19%  Similarity=0.379  Sum_probs=18.5

Q ss_pred             hhHHHHHHHHHHHhhCCCcHH
Q 026807            3 QYDDALSAFQTALQYNPQSAE   23 (233)
Q Consensus         3 ~y~dAlaafq~Alq~npqs~E   23 (233)
                      +|++|+..|+.||+.+|...+
T Consensus        24 ~y~~Ai~~y~~Al~i~~~~~~   44 (156)
T d2hr2a1          24 EYDEAAANCRRAMEISHTMPP   44 (156)
T ss_dssp             CHHHHHHHHHHHHHHHTTSCT
T ss_pred             CHHHHHHHHHHHHHhChhhhh
Confidence            699999999999999987653

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=84.14  E-value=4.8  Score=27.65  Aligned_cols=24  Identities=25%  Similarity=0.059  Sum_probs=20.7

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEVS   25 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~Evs   25 (233)
                      .+|++|+..|+.||+.+|.+....
T Consensus        26 g~~~~A~~~~~~aL~~~~~~~~~~   49 (366)
T d1hz4a_          26 GNPDEAERLAKLALEELPPGWFYS   49 (366)
T ss_dssp             TCHHHHHHHHHHHHHTCCTTCHHH
T ss_pred             CCHHHHHHHHHHHHhhCcCCCcHH
Confidence            479999999999999999886543

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=83.90  E-value=1.7  Score=34.05  Aligned_cols=26  Identities=23%  Similarity=0.386  Sum_probs=17.6

Q ss_pred             hhHHHHHHHHHHHhhCCCcHHHHHHH
Q 026807            3 QYDDALSAFQTALQYNPQSAEVSRKI   28 (233)
Q Consensus         3 ~y~dAlaafq~Alq~npqs~EvsrKI   28 (233)
                      +|++|++.|+.|++.||.+.+.-...
T Consensus        11 ~l~eAl~~l~~al~~~P~d~~ar~~L   36 (264)
T d1zbpa1          11 QLQQALELLIEAIKASPKDASLRSSF   36 (264)
T ss_dssp             CHHHHHHHHHHHHHTCTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence            56777777777777777776665443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.54  E-value=1.1  Score=37.01  Aligned_cols=31  Identities=19%  Similarity=0.215  Sum_probs=25.1

Q ss_pred             ChhhHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 026807            1 MEQYDDALSAFQTALQYNPQSAEVSRKIKRV   31 (233)
Q Consensus         1 me~y~dAlaafq~Alq~npqs~EvsrKIkrl   31 (233)
                      +++|++|+..|+.|++.||.+...--.+--|
T Consensus       165 ~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~  195 (497)
T d1ya0a1         165 RNQTSQAESYYRHAAQLVPSNGQPYNQLAIL  195 (497)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTBSHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHCCCchHHHHHHHHH
Confidence            4689999999999999999998875444333

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.57  E-value=1.9  Score=31.01  Aligned_cols=24  Identities=25%  Similarity=0.465  Sum_probs=19.1

Q ss_pred             hhHHHHHHHHHHHhhC------CCcHHHHH
Q 026807            3 QYDDALSAFQTALQYN------PQSAEVSR   26 (233)
Q Consensus         3 ~y~dAlaafq~Alq~n------pqs~Evsr   26 (233)
                      +|||||..+++|+.|=      |+|++|--
T Consensus        23 rydeAIech~kA~~yl~eA~klt~s~~~l~   52 (83)
T d2crba1          23 KYEEAISCHRKATTYLSEAMKLTESEQAHL   52 (83)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHhCCCcHHHHH
Confidence            7999999999887653      88887754

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=80.42  E-value=1.2  Score=33.34  Aligned_cols=24  Identities=25%  Similarity=0.193  Sum_probs=21.1

Q ss_pred             hhhHHHHHHHHHHHhhCCCcHHHH
Q 026807            2 EQYDDALSAFQTALQYNPQSAEVS   25 (233)
Q Consensus         2 e~y~dAlaafq~Alq~npqs~Evs   25 (233)
                      +.+++|+..|+.+|+.||.+.++-
T Consensus        43 ~~~~~al~~~~~~l~~~P~~~~a~   66 (334)
T d1dcea1          43 ELDESVLELTSQILGANPDFATLW   66 (334)
T ss_dssp             CCSHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cccHHHHHHHHHHHHHCCCcHHHH
Confidence            456899999999999999998873