Citrus Sinensis ID: 026817

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230--
Protein Sequence
MSVIDLITRVDAICKKYDKYDVDKQKELNVYGDDAFARLYGVVQADLDAALQKSEAAATEKNRATAVAMNAEIRRTKARLLEEVAKLQRLAFKKVKGLSKEELEARSDLVAALKDRIEGIPDGSTAAAKQTGGGTTSASYTGIKFDTYSGGKFDDEYFQETEESSGFRQEYEMRRMKQDQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKVILYSFVGISQCVVGA
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHccccHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcEEEEEEcccHHHHccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHccHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccEEEcccccccccccHccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHccEEEEEEEEEEcEEEEcc
Coil and Loop (DISEMBL)
MSVIDLITRVDAICKkydkydvdkqkelnvygddAFARLYGVVQADLDAALQKSEAAATEKNRATAVAMNAEIRRTKARLLEEVAKLQRLAFKKVKGLSKEELEARSDLVAALKDRiegipdgstaaakqtgggttsasytgikfdtysggkfddeyfqeteessgfRQEYEMRRMKQDQGLDVIGEGLDTLKNMAHDMNeeidrqvpmmdeIDEKVILYSFVGisqcvvga
Flexible Loop (DISEMBL)
msvidlitrvdaickkydkydvdkqkELNVYGDDAFARLYGVVQADLDAALQKSEaaateknratAVAMNAEIRRTKARLLEEVAKLQRLAfkkvkglskeeleARSDLVAALKDriegipdgstaaakqtgggttsasytgiKFDTYSGGKFDDEYFQETEESSGFRQEYEMRRMKQDQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKVILYSFVGISQCVVGA
Low Complexity Region (SEG)
MSVIDLITRVDAICkkydkydvdkqkELNVYGDDAFARLYGVVQADLDAALQKSEAAATEKNRATAVAMNAEIRRTKARLLEEVAKLQRLAFKKVKGLSKEELEARSDLVAALKDRIEGIPDgstaaakqtgggttsasytgIKFDTYSGGKFDDEYFQETEESSGFRQEYEMRRMKQDQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKVILYSFVGISQCVVGA
Disordered region (IsUnstruct)
**VIDLITRVDAICKKYDKYDVDKQKELNVYGDDAFARLYGVVQADLDAAL********************EIRRTKARLLEEVAKLQRLAFKKVK*******************************************YTGIKFDTYSGGKF*******************************************************MMDEIDEKVILYSFVGISQCVV**
Disordered Region (DISOPRED)
*SVIDLITRVDAICKKYDKYDV************AFARLYGVVQADL************************EIRRTKARLLEEVA*********************SDLVAALK****************************************************************DQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKVILYSFVGISQCVVGA
Disordered Region (DISEMBL)
MSVIDLITRVDAICKKYDKYDVDKQKELNVYGDDAFARLYGVVQADLDAALQKSEAAATEKNRATAVAMNAEIRRTKARLLEEVAKLQRLAFKKVKGLSKEELEARSDLVAALKDRIEGIPDG**************ASYTGIKFDTYSGGKFDDEYFQETEESSGFRQEYEMRRMKQDQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKVILYSFVGISQCVVGA
Disordered Region (DISPRO)
*SVIDLITRVDAICKKYDKYDVDKQKELNVYGDDAFARLYGVVQADLDAALQKSEAAATEKNRATAVAMNAEIRRTKARLLEEVAKLQRLAFKKVKGLSKEELEARSDLVAALKDRIEGIPD*************************YSGGKFDDEYFQETEESSGFRQEYEMRRMKQDQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKVILYSFVGISQCVVGA
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSVIDLITRVDAICKKYDKYDVDKQKELNVYGDDAFARLYGVVQADLDAALQKSEAAATEKNRATAVAMxxxxxxxxxxxxxxxxxxxxxAFKKVKGLSKEELEARSDLVAALKDRIEGIPDGSTAAAKQTGGGTTSASYTGIKFDTYSGGKFDDEYFQETEESSGFRQEYEMRRMKQDQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKVILYSFVGISQCVVGA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	232	2.2.26 [Sep-21-2011]
Q9SF29	266	Syntaxin-71 OS=Arabidopsi	yes	no	0.926	0.808	0.684	6e-82
Q94KK6	267	Syntaxin-72 OS=Arabidopsi	no	no	0.931	0.808	0.621	8e-74
Q94KK5	263	Syntaxin-73 OS=Arabidopsi	no	no	0.918	0.809	0.628	2e-72
Q54IX6	250	Probable syntaxin-8B OS=D	yes	no	0.724	0.672	0.237	2e-05

>sp|Q9SF29|SYP71_ARATH Syntaxin-71 OS=Arabidopsis thaliana GN=SYP71 PE=1 SV=1

 Score =  303 bits (776), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 150/219 (68%), Positives = 175/219 (79%), Gaps = 4/219 (1%)

Query: 1   MSVIDLITRVDAICKKYDKYDVDKQKELNVYGDDAFARLYGVVQADLDAALQKSEAAATE 60
           M+VID++TRVD+ICKKYDKYDVDKQ+E N+ GDDAFARLYG  +  ++ AL+K+E    E
Sbjct: 1   MTVIDILTRVDSICKKYDKYDVDKQREANISGDDAFARLYGAFETQIETALEKAELVTKE 60

Query: 61  KNRATAVAMNAEIRRTKARLLEEVAKLQRLAFKKVKGLSKEELEARSDLVAALKDRIEGI 120
           KNRA AVAMNAEIRRTKARL EEV KLQRLA K+VKGL+ EEL AR+DLV AL  RIE I
Sbjct: 61  KNRAAAVAMNAEIRRTKARLSEEVPKLQRLAVKRVKGLTTEELAARNDLVLALPARIEAI 120

Query: 121 PDGSTAAAKQTGGGTTSA--SYTGIKFDTYSGGKFDDEYFQETEESSGFRQEYEMRRMKQ 178
           PDG+    K T   T S+  S   IKFD  S G+FDD+YFQE+ ESS FRQEYEMR++KQ
Sbjct: 121 PDGTAGGPKSTSAWTPSSTTSRPDIKFD--SDGRFDDDYFQESNESSQFRQEYEMRKIKQ 178

Query: 179 DQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKV 217
           +QGLD+I EGLD LKNMA DMNEE+DRQVP+MDEID KV
Sbjct: 179 EQGLDMISEGLDALKNMASDMNEELDRQVPLMDEIDTKV 217

Vesicle trafficking protein that functions in the secretory pathway.
Arabidopsis thaliana (taxid: 3702)

>sp|Q94KK6|SYP72_ARATH Syntaxin-72 OS=Arabidopsis thaliana GN=SYP72 PE=2 SV=1

 Score =  276 bits (706), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 136/219 (62%), Positives = 171/219 (78%), Gaps = 3/219 (1%)

Query: 1   MSVIDLITRVDAICKKYDKYDVDKQKELNVYGDDAFARLYGVVQADLDAALQKSEAAATE 60
           M VID+I RVD ICKKYDKYD+DK +E+   GDDAF+RL+  + +D++A L+K+E A+TE
Sbjct: 1   MPVIDIIFRVDEICKKYDKYDIDKHREIGASGDDAFSRLFTSIDSDIEAVLRKAELASTE 60

Query: 61  KNRATAVAMNAEIRRTKARLLEEVAKLQRLAFKKVKGLSKEELEARSDLVAALKDRIEGI 120
           KNRA AVAMNAE+RRTKARL E+V KLQ+LA KK+KGL++EE E+R DLV AL DR++ I
Sbjct: 61  KNRAAAVAMNAEVRRTKARLAEDVVKLQKLAVKKIKGLTREERESRCDLVIALADRLQAI 120

Query: 121 PDGSTAAAKQTGG--GTTSASYTGIKFDTYSGGKFDDEYFQETEESSGFRQEYEMRRMKQ 178
           PDG+   AKQ     G  SA    IKFD  S    DD +FQ++EESS FRQEYEMRR KQ
Sbjct: 121 PDGNEHGAKQANSDWGGASAPNKNIKFD-MSEEDMDDGFFQQSEESSQFRQEYEMRRKKQ 179

Query: 179 DQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKV 217
           D+GLD+I EGLD LKN+A DMNEE+D+QVP+M+E++ KV
Sbjct: 180 DEGLDIISEGLDALKNLARDMNEELDKQVPLMEEMETKV 218

Vesicle trafficking protein that functions in the secretory pathway.

Arabidopsis thaliana (taxid: 3702)

>sp|Q94KK5|SYP73_ARATH Syntaxin-73 OS=Arabidopsis thaliana GN=SYP73 PE=2 SV=1

 Score =  271 bits (694), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 137/218 (62%), Positives = 170/218 (77%), Gaps = 5/218 (2%)

Query: 1   MSVIDLITRVDAICKKYDKYDVDKQKELNVYGDDAFARLYGVVQADLDAALQKSEAAATE 60
           M VIDLITRVD+ICKKY+KYD+++Q++ NV GDDAF+RLY  V+  L+  LQK+E  ++E
Sbjct: 1   MGVIDLITRVDSICKKYEKYDINRQRDANVSGDDAFSRLYSAVEYALETVLQKTEDLSSE 60

Query: 61  KNRATAVAMNAEIRRTKARLLEEVAKLQRLAFKKVKGLSKEELEARSDLVAALKDRIEGI 120
            N+A AVAMNAEIRRTKARLLE + KLQRL+ KKVKGLSKEEL+AR+DLV +L+D+IE I
Sbjct: 61  TNKAKAVAMNAEIRRTKARLLEGIPKLQRLSLKKVKGLSKEELDARNDLVLSLRDKIEAI 120

Query: 121 PDGSTAAAKQTGGGTTSASYTGIKFDT-YSGGKFDDEYFQETEESSGFRQEYEMRRMKQD 179
           P+ S   A   GG   S SY+ I+FDT  S  +   EYFQ T ES  F+QEYEM+R+KQ 
Sbjct: 121 PESS---APVVGGWEASTSYSNIRFDTNVSDDRIGSEYFQPTGESDQFKQEYEMKRIKQA 177

Query: 180 QGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKV 217
           + LD I EGLDTLKNMA D+NEE+DRQ P+MDEID K+
Sbjct: 178 R-LDYIAEGLDTLKNMAQDINEELDRQEPLMDEIDTKI 214

Vesicle trafficking protein that functions in the secretory pathway.

Arabidopsis thaliana (taxid: 3702)

>sp|Q54IX6|STX8B_DICDI Probable syntaxin-8B OS=Dictyostelium discoideum GN=syn8B PE=3 SV=1

 Score = 49.7 bits (117), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 89/194 (45%), Gaps = 26/194 (13%)

Query: 34  DAFARLYGVVQADLD--AALQKSEAAATEKNRATAVAMNAEIRRTKARLLEEVAKLQ-RL 90
           D   +L   + AD+   +  Q++     +KN        A++R     +  E+ +LQ  L
Sbjct: 10  DNIVKLINSLTADIKEYSIQQRNNPGIVQKNTP------AKLRNGLVHITNEILRLQDSL 63

Query: 91  AFKKVKGLSKEELEARSDLVAAL---KDRIEGIPDGSTAAAKQTGGGTTSASYTGIKFDT 147
            +   + + ++EL  R + V +L   K+++    D +     Q      + +  GI +  
Sbjct: 64  TYGNNRNIQEKELLRRKNKVESLISMKNQLNSTLDAAINNTSQKNELMGNNNGVGIGYSN 123

Query: 148 YSGGKFDDEYFQETEESSGF-------RQEYEMRRMKQDQGLDVIGEGLDTLKNMAHDMN 200
              GK      +ETE +  F        Q++ MR  +QD+ LD++ + +   KNMAH M+
Sbjct: 124 RQFGKP-----KETEATKQFDNQQLFTNQQHIMR--EQDESLDLLSQSIMRQKNMAHAMS 176

Query: 201 EEIDRQVPMMDEID 214
            E+D+   M+D+++
Sbjct: 177 NELDQHNEMLDDVE 190

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	232
255541652	284	syntaxin, putative [Ricinus communis] gi	0.935	0.764	0.802	9e-96
225439930	265	PREDICTED: syntaxin-71 [Vitis vinifera]	0.926	0.811	0.778	6e-94
224127720	261	predicted protein [Populus trichocarpa]	0.931	0.827	0.783	2e-92
449453330	265	PREDICTED: syntaxin-71-like [Cucumis sat	0.926	0.811	0.760	5e-92
449440087	265	PREDICTED: syntaxin-71-like [Cucumis sat	0.926	0.811	0.751	6e-91
449526944	265	PREDICTED: syntaxin-71-like [Cucumis sat	0.926	0.811	0.751	6e-91
255557036	266	syntaxin, putative [Ricinus communis] gi	0.926	0.808	0.761	2e-90
224482657	271	syntaxin-71 [Annona cherimola]	0.935	0.800	0.737	3e-89
224138654	265	predicted protein [Populus trichocarpa]	0.926	0.811	0.746	9e-89
356537535	265	PREDICTED: syntaxin-71-like [Glycine max	0.926	0.811	0.737	3e-88

>gi|255541652|ref|XP_002511890.1| syntaxin, putative [Ricinus communis] gi|223549070|gb|EEF50559.1| syntaxin, putative [Ricinus communis]

 Score =  355 bits (911), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 175/218 (80%), Positives = 190/218 (87%), Gaps = 1/218 (0%)

Query: 1   MSVIDLITRVDAICKKYDKYDVDKQKELNVYGDDAFARLYGVVQADLDAALQKSEAAATE 60
           M+VIDLITRVDAICKKYDKYDV KQK+LNV GDDAFARLYGVV+ADLD+AL KSE+AATE
Sbjct: 1   MTVIDLITRVDAICKKYDKYDVGKQKDLNVAGDDAFARLYGVVEADLDSALHKSESAATE 60

Query: 61  KNRATAVAMNAEIRRTKARLLEEVAKLQRLAFKKVKGLSKEELEARSDLVAALKDRIEGI 120
           KNRAT VA+NAEIRRTKARLLEE+ KLQRL+ KKVKGLSKEELEARSDLV ALKDRIE I
Sbjct: 61  KNRATVVAINAEIRRTKARLLEELPKLQRLSLKKVKGLSKEELEARSDLVTALKDRIEAI 120

Query: 121 PDGSTAAAKQTG-GGTTSASYTGIKFDTYSGGKFDDEYFQETEESSGFRQEYEMRRMKQD 179
           PDGS    KQT      S S+ GIKFD+   G FD+EYFQ TEES  FRQEYEMRR+KQD
Sbjct: 121 PDGSANTVKQTSDWAAPSTSHAGIKFDSTYDGSFDNEYFQRTEESDRFRQEYEMRRVKQD 180

Query: 180 QGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKV 217
           QGL+VI EGLDTLKNMAHDMNEE+DRQVPMMDEID+KV
Sbjct: 181 QGLEVIAEGLDTLKNMAHDMNEELDRQVPMMDEIDDKV 218

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439930|ref|XP_002280272.1| PREDICTED: syntaxin-71 [Vitis vinifera] gi|297741579|emb|CBI32711.3| unnamed protein product [Vitis vinifera]

 Score =  349 bits (895), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 169/217 (77%), Positives = 190/217 (87%), Gaps = 2/217 (0%)

Query: 1   MSVIDLITRVDAICKKYDKYDVDKQKELNVYGDDAFARLYGVVQADLDAALQKSEAAATE 60
           M+VID++TRVDAICKKYDKYD+DKQK+LNV GDDAFARLY VV+AD++AALQK++ A+ E
Sbjct: 1   MTVIDILTRVDAICKKYDKYDIDKQKDLNVSGDDAFARLYAVVEADIEAALQKADTASNE 60

Query: 61  KNRATAVAMNAEIRRTKARLLEEVAKLQRLAFKKVKGLSKEELEARSDLVAALKDRIEGI 120
           KNRA+AVA+NAEIRRTKARLLEEV KLQRLA KKVKGLS EEL AR+DLV AL DRI+ I
Sbjct: 61  KNRASAVALNAEIRRTKARLLEEVPKLQRLAIKKVKGLSTEELAARNDLVLALPDRIQAI 120

Query: 121 PDGSTAAAKQTGGGTTSASYTGIKFDTYSGGKFDDEYFQETEESSGFRQEYEMRRMKQDQ 180
           PDG+  A KQTGG   SAS T IKFD  S G+FD EYFQ+TEESS FRQEYEMR+M QDQ
Sbjct: 121 PDGAATAPKQTGGWAASASRTEIKFD--SDGRFDSEYFQQTEESSQFRQEYEMRKMNQDQ 178

Query: 181 GLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKV 217
           GLDVI EGLDTLKNMAHDMNEE+DRQVP+MDEID KV
Sbjct: 179 GLDVIAEGLDTLKNMAHDMNEELDRQVPLMDEIDTKV 215

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127720|ref|XP_002320147.1| predicted protein [Populus trichocarpa] gi|222860920|gb|EEE98462.1| predicted protein [Populus trichocarpa]

 Score =  344 bits (882), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 170/217 (78%), Positives = 189/217 (87%), Gaps = 1/217 (0%)

Query: 1   MSVIDLITRVDAICKKYDKYDVDKQKELNVYGDDAFARLYGVVQADLDAALQKSEAAATE 60
           M+VIDL+TRVD+ICKK+DKYDVDKQK LN  GDDAFARLY VV+ADLDA LQKSEAA  E
Sbjct: 1   MTVIDLVTRVDSICKKFDKYDVDKQKNLNAAGDDAFARLYAVVEADLDAVLQKSEAAKIE 60

Query: 61  KNRATAVAMNAEIRRTKARLLEEVAKLQRLAFKKVKGLSKEELEARSDLVAALKDRIEGI 120
           K+RATAVAMNAEIRRTKARLLEE+ KLQRLAFK+VKGLSKEE E RSDLVAALKDRIE +
Sbjct: 61  KSRATAVAMNAEIRRTKARLLEEIPKLQRLAFKQVKGLSKEEREVRSDLVAALKDRIEAV 120

Query: 121 PDGSTAAAKQTGGGTTSASYTGIKFDTYSGGKFDDEYFQETEESSGFRQEYEMRRMKQDQ 180
            DG+ +AAKQ G    SAS+ GIKFD+   G+FDDEYFQ+TEES  FRQEYEMRR+KQ  
Sbjct: 121 ADGNISAAKQGGDSAPSASHGGIKFDSTYDGRFDDEYFQQTEESDRFRQEYEMRRVKQ-A 179

Query: 181 GLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKV 217
            LDVI EGLDTLKNMAHDMNEE+DRQVP+MDEID+KV
Sbjct: 180 SLDVIAEGLDTLKNMAHDMNEEVDRQVPLMDEIDDKV 216

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453330|ref|XP_004144411.1| PREDICTED: syntaxin-71-like [Cucumis sativus] gi|449500071|ref|XP_004160996.1| PREDICTED: syntaxin-71-like [Cucumis sativus]

 Score =  343 bits (879), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 165/217 (76%), Positives = 188/217 (86%), Gaps = 2/217 (0%)

Query: 1   MSVIDLITRVDAICKKYDKYDVDKQKELNVYGDDAFARLYGVVQADLDAALQKSEAAATE 60
           MSVIDL+TRVDAIC+KYDKYD++KQ++LNV GDDAFARLY  V+AD++AALQK+E A+ E
Sbjct: 1   MSVIDLLTRVDAICQKYDKYDIEKQRDLNVSGDDAFARLYATVEADIEAALQKAEDASKE 60

Query: 61  KNRATAVAMNAEIRRTKARLLEEVAKLQRLAFKKVKGLSKEELEARSDLVAALKDRIEGI 120
           KNRA+ VA+NAEIRRTKARLLE+V KLQRLA K+VKGLS E+L  R+DLV AL DRI+ I
Sbjct: 61  KNRASVVALNAEIRRTKARLLEDVPKLQRLAVKRVKGLSTEDLTTRNDLVLALPDRIQAI 120

Query: 121 PDGSTAAAKQTGGGTTSASYTGIKFDTYSGGKFDDEYFQETEESSGFRQEYEMRRMKQDQ 180
           PDG+    K  GG TTSAS T IKFD  SGG+FDDEYFQ TEESS FRQEYEMR+MKQDQ
Sbjct: 121 PDGTVTTTKNNGGWTTSASRTEIKFD--SGGRFDDEYFQHTEESSQFRQEYEMRKMKQDQ 178

Query: 181 GLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKV 217
           GLD+I EGLDTLKNMAHDMNEEIDRQVP+MDEID KV
Sbjct: 179 GLDMISEGLDTLKNMAHDMNEEIDRQVPLMDEIDTKV 215

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440087|ref|XP_004137816.1| PREDICTED: syntaxin-71-like [Cucumis sativus]

 Score =  339 bits (869), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 163/217 (75%), Positives = 187/217 (86%), Gaps = 2/217 (0%)

Query: 1   MSVIDLITRVDAICKKYDKYDVDKQKELNVYGDDAFARLYGVVQADLDAALQKSEAAATE 60
           MSVIDL+TRVDAIC+KYDKYD++KQ++LNV GDDAFARLY  V+AD++AALQK+E A+ E
Sbjct: 1   MSVIDLLTRVDAICQKYDKYDIEKQRDLNVSGDDAFARLYATVEADIEAALQKAEDASKE 60

Query: 61  KNRATAVAMNAEIRRTKARLLEEVAKLQRLAFKKVKGLSKEELEARSDLVAALKDRIEGI 120
           KNRA+ VA+NAEIRRTKARLLEEV KLQRLA K+VKGLS E+L  R+DLV AL DRI+ I
Sbjct: 61  KNRASVVALNAEIRRTKARLLEEVPKLQRLAVKRVKGLSTEDLTTRNDLVLALPDRIQAI 120

Query: 121 PDGSTAAAKQTGGGTTSASYTGIKFDTYSGGKFDDEYFQETEESSGFRQEYEMRRMKQDQ 180
           PDG+    K  GG T+SAS T IKFD  S G+FDDEYFQ TE+SS FRQEYEMR+MKQDQ
Sbjct: 121 PDGTVTTTKNNGGWTSSASRTEIKFD--SDGRFDDEYFQHTEQSSQFRQEYEMRKMKQDQ 178

Query: 181 GLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKV 217
           GLD+I EGLDTLKNMAHDMNEEIDRQVP+MDEID KV
Sbjct: 179 GLDMISEGLDTLKNMAHDMNEEIDRQVPLMDEIDTKV 215

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449526944|ref|XP_004170473.1| PREDICTED: syntaxin-71-like [Cucumis sativus]

 Score =  339 bits (869), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 163/217 (75%), Positives = 187/217 (86%), Gaps = 2/217 (0%)

Query: 1   MSVIDLITRVDAICKKYDKYDVDKQKELNVYGDDAFARLYGVVQADLDAALQKSEAAATE 60
           MSVIDL+TRVDAIC+KYDKYD++KQ++LNV GDDAFARLY  V+AD++AALQK+E A+ E
Sbjct: 1   MSVIDLLTRVDAICQKYDKYDIEKQRDLNVSGDDAFARLYATVEADIEAALQKAEDASKE 60

Query: 61  KNRATAVAMNAEIRRTKARLLEEVAKLQRLAFKKVKGLSKEELEARSDLVAALKDRIEGI 120
           KNRA+ VA+NAEIRRTKARLLEEV KLQRLA K+VKGLS E+L  R+DLV AL DRI+ I
Sbjct: 61  KNRASVVALNAEIRRTKARLLEEVPKLQRLAVKRVKGLSTEDLTTRNDLVLALPDRIQAI 120

Query: 121 PDGSTAAAKQTGGGTTSASYTGIKFDTYSGGKFDDEYFQETEESSGFRQEYEMRRMKQDQ 180
           PDG+    K  GG T+SAS T IKFD  S G+FDDEYFQ TE+SS FRQEYEMR+MKQDQ
Sbjct: 121 PDGTVTTTKNNGGWTSSASRTEIKFD--SDGRFDDEYFQHTEQSSQFRQEYEMRKMKQDQ 178

Query: 181 GLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKV 217
           GLD+I EGLDTLKNMAHDMNEEIDRQVP+MDEID KV
Sbjct: 179 GLDMISEGLDTLKNMAHDMNEEIDRQVPLMDEIDTKV 215

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557036|ref|XP_002519551.1| syntaxin, putative [Ricinus communis] gi|223541414|gb|EEF42965.1| syntaxin, putative [Ricinus communis]

 Score =  337 bits (864), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 166/218 (76%), Positives = 192/218 (88%), Gaps = 3/218 (1%)

Query: 1   MSVIDLITRVDAICKKYDKYDVDKQKELNVYGDDAFARLYGVVQADLDAALQKSEAAATE 60
           MSVID++TRVDAIC+KYD+YDV+KQK+LNV GDDAFARLY VV+AD+++ALQK+E A+ E
Sbjct: 1   MSVIDILTRVDAICQKYDRYDVEKQKDLNVSGDDAFARLYAVVEADIESALQKAEVASKE 60

Query: 61  KNRATAVAMNAEIRRTKARLLEEVAKLQRLAFKKVKGLSKEELEARSDLVAALKDRIEGI 120
           KN+A+AVA+NAEIRRTKA+LLEEV KLQRLA KKVKGLS EEL AR+DLV AL DRI+ I
Sbjct: 61  KNKASAVALNAEIRRTKAKLLEEVPKLQRLAVKKVKGLSTEELTARNDLVLALPDRIQAI 120

Query: 121 PDGSTAAAKQTGG-GTTSASYTGIKFDTYSGGKFDDEYFQETEESSGFRQEYEMRRMKQD 179
           PDG+ AA KQTGG G  SAS T IKFD  S G+FD+EYFQE E SS FRQEYEMRRMKQD
Sbjct: 121 PDGNAAAPKQTGGWGAPSASRTEIKFD--SDGRFDNEYFQENETSSQFRQEYEMRRMKQD 178

Query: 180 QGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKV 217
           QGLD+I +GLDTLK+MAHDMNEE+DRQVP+MDEID KV
Sbjct: 179 QGLDMISKGLDTLKDMAHDMNEELDRQVPLMDEIDTKV 216

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224482657|gb|ACN50185.1| syntaxin-71 [Annona cherimola]

 Score =  333 bits (854), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 163/221 (73%), Positives = 190/221 (85%), Gaps = 4/221 (1%)

Query: 1   MSVIDLITRVDAICKKYDKYDVDKQKELNVYGDDAFARLYGVVQADLDAALQKSEAAATE 60
           MSVID++TRVD+ICKKY+KYDV+KQ++ N+ GDDAFARLY VV+AD++AALQKSE AA E
Sbjct: 1   MSVIDILTRVDSICKKYEKYDVEKQRDQNISGDDAFARLYSVVEADIEAALQKSEVAAKE 60

Query: 61  KNRATAVAMNAEIRRTKARLLEEVAKLQRLAFKKVKGLSKEELEARSDLVAALKDRIEGI 120
           KNRA+AVAMNAEIRRTKARLLEEV KLQRLA KKVKGLSKEEL  RSDLV AL +RI+ I
Sbjct: 61  KNRASAVAMNAEIRRTKARLLEEVPKLQRLAVKKVKGLSKEELATRSDLVLALPERIQAI 120

Query: 121 PDGSTAAAKQ----TGGGTTSASYTGIKFDTYSGGKFDDEYFQETEESSGFRQEYEMRRM 176
           PDGS+ A KQ     GG T S S T IKFD+ + G+FDDE+F ++EESS FRQEYEMR+M
Sbjct: 121 PDGSSTATKQGGGGGGGWTASGSRTEIKFDSSADGRFDDEFFHQSEESSQFRQEYEMRKM 180

Query: 177 KQDQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKV 217
           +QDQGLD I EGLDTLKNMAHDMNEE+DRQVP++DEI+ KV
Sbjct: 181 RQDQGLDTISEGLDTLKNMAHDMNEELDRQVPLIDEIETKV 221

Source: Annona cherimola

Species: Annona cherimola

Genus: Annona

Family: Annonaceae

Order: Magnoliales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138654|ref|XP_002322868.1| predicted protein [Populus trichocarpa] gi|222867498|gb|EEF04629.1| predicted protein [Populus trichocarpa]

 Score =  332 bits (850), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 162/217 (74%), Positives = 187/217 (86%), Gaps = 2/217 (0%)

Query: 1   MSVIDLITRVDAICKKYDKYDVDKQKELNVYGDDAFARLYGVVQADLDAALQKSEAAATE 60
           MSVID++TRVDAIC KYDKYD++KQK+LNV GDDAFARLY  + +D++AA QK+E A+ E
Sbjct: 1   MSVIDILTRVDAICNKYDKYDIEKQKDLNVSGDDAFARLYAAIDSDIEAAHQKAELASKE 60

Query: 61  KNRATAVAMNAEIRRTKARLLEEVAKLQRLAFKKVKGLSKEELEARSDLVAALKDRIEGI 120
           K++A+AVA+NAE+RRTKARLLEEV KLQRLA KKVKGLS EEL AR+DLV AL DRI+ I
Sbjct: 61  KSKASAVAINAELRRTKARLLEEVPKLQRLAVKKVKGLSTEELAARNDLVLALPDRIQAI 120

Query: 121 PDGSTAAAKQTGGGTTSASYTGIKFDTYSGGKFDDEYFQETEESSGFRQEYEMRRMKQDQ 180
           PDG+ AA KQTGG  TSA    IKFD  S G+FD+EYFQETE SS FRQEYEMR+MKQDQ
Sbjct: 121 PDGTAAAPKQTGGWGTSAPRAEIKFD--SDGQFDNEYFQETETSSQFRQEYEMRKMKQDQ 178

Query: 181 GLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKV 217
           GLD+I +GLDTLKNMAHDMNEEIDRQVP+MDEID KV
Sbjct: 179 GLDMISDGLDTLKNMAHDMNEEIDRQVPLMDEIDTKV 215

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356537535|ref|XP_003537282.1| PREDICTED: syntaxin-71-like [Glycine max]

 Score =  330 bits (846), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 160/217 (73%), Positives = 184/217 (84%), Gaps = 2/217 (0%)

Query: 1   MSVIDLITRVDAICKKYDKYDVDKQKELNVYGDDAFARLYGVVQADLDAALQKSEAAATE 60
           MSVID++TRVD+ICKKYDKYDVDK ++ NV GDDAFARLY  V AD++A LQK+E+A+ E
Sbjct: 1   MSVIDILTRVDSICKKYDKYDVDKHRDANVSGDDAFARLYASVDADIEALLQKAESASKE 60

Query: 61  KNRATAVAMNAEIRRTKARLLEEVAKLQRLAFKKVKGLSKEELEARSDLVAALKDRIEGI 120
           K +A+AVA+NAEIRRTKARLLEEV KLQRLA KKVKGLS +E  AR+DLV AL DRI+ I
Sbjct: 61  KGKASAVAINAEIRRTKARLLEEVPKLQRLAVKKVKGLSSQEFAARNDLVLALPDRIQAI 120

Query: 121 PDGSTAAAKQTGGGTTSASYTGIKFDTYSGGKFDDEYFQETEESSGFRQEYEMRRMKQDQ 180
           PDG+    KQTGG   SAS   IKFD  S G+FDDEYFQ++E+S+ FRQEYEMRRMKQDQ
Sbjct: 121 PDGAPPVPKQTGGWAASASRPEIKFD--SDGRFDDEYFQQSEQSNQFRQEYEMRRMKQDQ 178

Query: 181 GLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKV 217
           GLDVI EGLDTLKNMAHDMNEE+DRQVP+MDEID KV
Sbjct: 179 GLDVIAEGLDTLKNMAHDMNEELDRQVPLMDEIDTKV 215

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	232
TAIR|locus:2075054	266	SYP71 "syntaxin of plants 71"	0.926	0.808	0.607	1.8e-62
TAIR|locus:2078282	267	SYP72 "syntaxin of plants 72"	0.931	0.808	0.547	9.6e-57
DICTYBASE|DDB_G0288439	250	syn8B "putative t-SNARE family	0.685	0.636	0.221	2.5e-05

TAIR|locus:2075054 SYP71 "syntaxin of plants 71" [Arabidopsis thaliana (taxid:3702)]

 Score = 638 (229.6 bits), Expect = 1.8e-62, P = 1.8e-62
 Identities = 133/219 (60%), Positives = 155/219 (70%)

Query:     1 MSVIDLITRVDAICXXXXXXXXXXXXELNVYGDDAFARLYGVVQADLDAALQKSEAAATE 60
             M+VID++TRVD+IC            E N+ GDDAFARLYG  +  ++ AL+K+E    E
Sbjct:     1 MTVIDILTRVDSICKKYDKYDVDKQREANISGDDAFARLYGAFETQIETALEKAELVTKE 60

Query:    61 KNRATAVAMNAEIRRTKARLLEEVAKLQRLAFKKVKGLSKEELEARSDLVAALKDRIEGI 120
             KNRA AVAMNAEIRRTKARL EEV KLQRLA K+VKGL+ EEL AR+DLV AL  RIE I
Sbjct:    61 KNRAAAVAMNAEIRRTKARLSEEVPKLQRLAVKRVKGLTTEELAARNDLVLALPARIEAI 120

Query:   121 PDXXXXXXXXXXXXXXXXXXXX--IKFDTYSGGKFDDEYFQETEESSGFRQEYEMRRMKQ 178
             PD                      IKFD  S G+FDD+YFQE+ ESS FRQEYEMR++KQ
Sbjct:   121 PDGTAGGPKSTSAWTPSSTTSRPDIKFD--SDGRFDDDYFQESNESSQFRQEYEMRKIKQ 178

Query:   179 DQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKV 217
             +QGLD+I EGLD LKNMA DMNEE+DRQVP+MDEID KV
Sbjct:   179 EQGLDMISEGLDALKNMASDMNEELDRQVPLMDEIDTKV 217

GO:0005484 "SNAP receptor activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006886 "intracellular protein transport" evidence=IEA;TAS

GO:0008565 "protein transporter activity" evidence=TAS

GO:0016021 "integral to membrane" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006605 "protein targeting" evidence=RCA

TAIR|locus:2078282 SYP72 "syntaxin of plants 72" [Arabidopsis thaliana (taxid:3702)]

 Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
 Identities = 120/219 (54%), Positives = 152/219 (69%)

Query:     1 MSVIDLITRVDAICXXXXXXXXXXXXELNVYGDDAFARLYGVVQADLDAALQKSEAAATE 60
             M VID+I RVD IC            E+   GDDAF+RL+  + +D++A L+K+E A+TE
Sbjct:     1 MPVIDIIFRVDEICKKYDKYDIDKHREIGASGDDAFSRLFTSIDSDIEAVLRKAELASTE 60

Query:    61 KNRATAVAMNAEIRRTKARLLEEVAKLQRLAFKKVKGLSKEELEARSDLVAALKDRIEGI 120
             KNRA AVAMNAE+RRTKARL E+V KLQ+LA KK+KGL++EE E+R DLV AL DR++ I
Sbjct:    61 KNRAAAVAMNAEVRRTKARLAEDVVKLQKLAVKKIKGLTREERESRCDLVIALADRLQAI 120

Query:   121 PDXXXXXXXXXXXXXXXXXX--XXIKFDTYSGGKFDDEYFQETEESSGFRQEYEMRRMKQ 178
             PD                      IKFD  S    DD +FQ++EESS FRQEYEMRR KQ
Sbjct:   121 PDGNEHGAKQANSDWGGASAPNKNIKFDM-SEEDMDDGFFQQSEESSQFRQEYEMRRKKQ 179

Query:   179 DQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKV 217
             D+GLD+I EGLD LKN+A DMNEE+D+QVP+M+E++ KV
Sbjct:   180 DEGLDIISEGLDALKNLARDMNEELDKQVPLMEEMETKV 218

GO:0005484 "SNAP receptor activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006886 "intracellular protein transport" evidence=IEA;TAS

GO:0016020 "membrane" evidence=IEA

GO:0008565 "protein transporter activity" evidence=TAS

GO:0016021 "integral to membrane" evidence=TAS

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

DICTYBASE|DDB_G0288439 syn8B "putative t-SNARE family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 118 (46.6 bits), Expect = 2.5e-05, P = 2.5e-05
 Identities = 37/167 (22%), Positives = 75/167 (44%)

Query:    55 EAAATEKNRATAVAMN--AEIRRTKARLLEEVAKLQ-RLAFKKVKGLSKEELEARSDLVA 111
             E +  ++N    V  N  A++R     +  E+ +LQ  L +   + + ++EL  R + V 
Sbjct:    25 EYSIQQRNNPGIVQKNTPAKLRNGLVHITNEILRLQDSLTYGNNRNIQEKELLRRKNKVE 84

Query:   112 AL---KDRIEGIPDXXXXXXXXXXXXXXXXXXXXIKFDTYSGGK-FDDEYFQETEESSGF 167
             +L   K+++    D                    I +     GK  + E  ++ +    F
Sbjct:    85 SLISMKNQLNSTLDAAINNTSQKNELMGNNNGVGIGYSNRQFGKPKETEATKQFDNQQLF 144

Query:   168 RQEYEMRRMKQDQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEID 214
               +  + R +QD+ LD++ + +   KNMAH M+ E+D+   M+D+++
Sbjct:   145 TNQQHIMR-EQDESLDLLSQSIMRQKNMAHAMSNELDQHNEMLDDVE 190


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.134   0.359    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      232       200   0.00087  111 3  11 22  0.49    32
                                                     31  0.45    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  541 (58 KB)
  Total size of DFA:  129 KB (2083 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.46u 0.16s 20.62t   Elapsed:  00:00:01
  Total cpu time:  20.46u 0.16s 20.62t   Elapsed:  00:00:01
  Start:  Sat May 11 06:39:37 2013   End:  Sat May 11 06:39:38 2013

GO:0006810 "transport" evidence=ISS

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0003674 "molecular_function" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SF29	SYP71_ARATH	No assigned EC number	0.6849	0.9267	0.8082	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	232
pfam05739	62	pfam05739, SNARE, SNARE domain	4e-07
cd00193	60	cd00193, t_SNARE, Soluble NSF (N-ethylmaleimide-se	0.004

>gnl|CDD|203323 pfam05739, SNARE, SNARE domain

 Score = 45.6 bits (109), Expect = 4e-07
 Identities = 13/40 (32%), Positives = 24/40 (60%)

Query: 178 QDQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKV 217
           +D+ L+ +   +  LK +  DM EE++ Q  ++D ID+ V
Sbjct: 1   RDEALEELESSIGELKQLFLDMGEEVEEQGELLDRIDDNV 40

Most if not all vesicular membrane fusion events in eukaryotic cells are believed to be mediated by a conserved fusion machinery, the SNARE [soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptors] machinery. The SNARE domain is thought to act as a protein-protein interaction module in the assembly of a SNARE protein complex. Length = 62

>gnl|CDD|238115 cd00193, t_SNARE, Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent

 Score = 34.4 bits (80), Expect = 0.004
 Identities = 10/40 (25%), Positives = 23/40 (57%)

Query: 178 QDQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKV 217
           +D+ L+ +   +  LK +  D+  E++ Q  ++D I++ V
Sbjct: 4   RDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNV 43

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	232
KOG3202	235	consensus SNARE protein TLG1/Syntaxin 6 [Intracell	99.93
PF09177	97	Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IP	99.37
PF05739	63	SNARE: SNARE domain; InterPro: IPR000727 The proce	98.97
smart00397	66	t_SNARE Helical region found in SNAREs. All alpha-	98.78
cd00193	60	t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fu	98.69
KOG3065	273	consensus SNAP-25 (synaptosome-associated protein)	98.37
KOG3385	118	consensus V-SNARE [Intracellular trafficking, secr	97.9
KOG0812	311	consensus SNARE protein SED5/Syntaxin 5 [Intracell	95.14
KOG0810	297	consensus SNARE protein Syntaxin 1 and related pro	94.36
KOG0811	269	consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt	91.5
COG5325	283	t-SNARE complex subunit, syntaxin [Intracellular t	89.8
PF12352	66	V-SNARE_C: Snare region anchored in the vesicle me	80.13

>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=3.1e-24  Score=185.08  Aligned_cols=176  Identities=17%  Similarity=0.215  Sum_probs=121.5

Q ss_pred             CCCCchhhhHHHHHHHHHHHHHHHHHHHhhhhh------h-hHHHHHHHHHHHHHHHHHHHHHHHHH---H--hhhccCC
Q 026817           31 YGDDAFARLYGVVQADLDAALQKSEAAATEKNR------A-TAVAMNAEIRRTKARLLEEVAKLQRL---A--FKKVKGL   98 (232)
Q Consensus        31 ~~~DPF~~~~~~v~~ei~~~l~~a~~~~~~~~~------~-~~~~~~aeir~~l~~L~~~L~dL~~~---~--~~~~~~l   98 (232)
                      +..|||+.+|.    |+.++.+..+.++.+.+.      . ..|... .||   ..++|.+.+|+++   +  .+.+|++
T Consensus         3 ~~~Dp~~~v~~----e~~k~~~~~~~~~~r~~~~~~~~~~~~~~~t~-~lr---~~i~~~~edl~~~~~il~~~~~~~~i   74 (235)
T KOG3202|consen    3 SSEDPFFRVKN----ETLKLSEEIQGLYQRRSELLKDTGSDAEELTS-VLR---RSIEEDLEDLDELISILERNPSKFGI   74 (235)
T ss_pred             CCCCchHHHHH----HHHHHHHHHHHHHHHHHHHHhhccchhHHHHH-HHH---HHhHHHHHHHHHHHHHHHhCcccccC
Confidence            56799966655    555555555555553221      1 334444 777   5777777777754   2  3378899


Q ss_pred             CHHHHHHHHHHHHHHHHHHHchhhhhhhcccccC-CCCCCCCCCCCccCCCCCCCC-Ccch-hhhchh-hhHHHHHHHHH
Q 026817           99 SKEELEARSDLVAALKDRIEGIPDGSTAAAKQTG-GGTTSASYTGIKFDTYSGGKF-DDEY-FQETEE-SSGFRQEYEMR  174 (232)
Q Consensus        99 t~~El~rRr~~V~~l~~~i~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~t~~-~~~~~q~Qq~~  174 (232)
                      ++.|+.+|+.||.+++.++..|+..+.+.+..+. .+.       +..+.+ .++. .... ...+.+ ++...+.|+++
T Consensus        75 de~El~~R~~~i~~lr~q~~~~~~~~~~~~~~~~~~r~-------~l~~~~-~~~~~~~~~~~~~~~D~v~~~~~~qqqm  146 (235)
T KOG3202|consen   75 DEFELSRRRRFIDNLRTQLRQMKSKMAMSGFANSNIRD-------ILLGPE-KSPNLDEAMSRASGLDNVQEIVQLQQQM  146 (235)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchh-------hhcCCC-CCCchhhhHHHhhccCcHHHHHHHHHHH
Confidence            9999999999999999999999999876221111 000       011100 0000 0000 001122 35567889999


Q ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhcc
Q 026817          175 RMKQDQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKVILYSF  222 (232)
Q Consensus       175 m~eQD~~LD~Is~~v~~Lk~~a~~Ig~EL~~Q~~mLDdLd~~mD~~~~  222 (232)
                      |++||++||.||++|+|||+||.+||+||+.|+.|||+|++.||+|..
T Consensus       147 ~~eQDe~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~s  194 (235)
T KOG3202|consen  147 LQEQDEGLDGLSATVQRLKGMALAMGEELEEQGRLLDDLDNEMDRTES  194 (235)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999863

>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle

Probab=99.37  E-value=3.5e-12  Score=96.52  Aligned_cols=83  Identities=22%  Similarity=0.312  Sum_probs=67.1

Q ss_pred             CchhhhHHHHHHHHHHHHHHHHHHHhhhhh---------hhHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhhccCCC
Q 026817           34 DAFARLYGVVQADLDAALQKSEAAATEKNR---------ATAVAMNAEIRRTKARLLEEVAKLQRLA-----FKKVKGLS   99 (232)
Q Consensus        34 DPF~~~~~~v~~ei~~~l~~a~~~~~~~~~---------~~~~~~~aeir~~l~~L~~~L~dL~~~~-----~~~~~~lt   99 (232)
                      |||    |.|++||.+.+..+++++..-..         ...+.. .+|+..|..|+|+|.+|++++     .+.+|+|+
T Consensus         1 DPF----~~v~~ev~~sl~~l~~~~~~~~~~~~~~~~~~e~~~~~-~eL~~~l~~ie~~L~DL~~aV~ive~np~kF~l~   75 (97)
T PF09177_consen    1 DPF----FVVKDEVQSSLDRLESLYRRWQRLRSDTSSSEELKWLK-RELRNALQSIEWDLEDLEEAVRIVEKNPSKFNLS   75 (97)
T ss_dssp             -HH----HHHHHHHHHHHHHHHHHHHHHHHHTTHCC-HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHT-H
T ss_pred             CCc----HHHHHHHHHHHHHHHHHHHHHHHhcccCCCcHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCC
Confidence            899    88899999999998888773111         123444 499999999999999999873     33788999


Q ss_pred             HHHHHHHHHHHHHHHHHHHchh
Q 026817          100 KEELEARSDLVAALKDRIEGIP  121 (232)
Q Consensus       100 ~~El~rRr~~V~~l~~~i~~l~  121 (232)
                      +.||.+|+.||..++.++..|+
T Consensus        76 ~~Ei~~Rr~fv~~~~~~i~~~k   97 (97)
T PF09177_consen   76 EEEISRRRQFVSAIRNQIKQMK   97 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999875

Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.

>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]

Probab=98.97  E-value=1.5e-09  Score=75.16  Aligned_cols=46  Identities=30%  Similarity=0.505  Sum_probs=44.3

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhcc
Q 026817          177 KQDQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKVILYSF  222 (232)
Q Consensus       177 eQD~~LD~Is~~v~~Lk~~a~~Ig~EL~~Q~~mLDdLd~~mD~~~~  222 (232)
                      +||+.|+.|+.+|.+|++|+..||.||++|+.|||.|+..||+|+.
T Consensus         1 e~d~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~   46 (63)
T PF05739_consen    1 ERDEELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANE   46 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHH
Confidence            6899999999999999999999999999999999999999999864

Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....

>smart00397 t_SNARE Helical region found in SNAREs

Probab=98.78  E-value=1.7e-08  Score=69.57  Aligned_cols=52  Identities=21%  Similarity=0.329  Sum_probs=49.2

Q ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhcc
Q 026817          171 YEMRRMKQDQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKVILYSF  222 (232)
Q Consensus       171 Qq~~m~eQD~~LD~Is~~v~~Lk~~a~~Ig~EL~~Q~~mLDdLd~~mD~~~~  222 (232)
                      +.+++++||+.|+.|+.+|.++++++..|+.||..|++|||.++..+|.+..
T Consensus         3 ~~~~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~   54 (66)
T smart00397        3 ADQMEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADV   54 (66)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            4678999999999999999999999999999999999999999999998864

All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".

>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent

Probab=98.69  E-value=3.4e-08  Score=66.96  Aligned_cols=47  Identities=21%  Similarity=0.401  Sum_probs=45.0

Q ss_pred             HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhcc
Q 026817          176 MKQDQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKVILYSF  222 (232)
Q Consensus       176 ~eQD~~LD~Is~~v~~Lk~~a~~Ig~EL~~Q~~mLDdLd~~mD~~~~  222 (232)
                      ++||+.|+.|+.+|.+|+.|+..||.||..|+++||.++..||.+..
T Consensus         2 ~e~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~   48 (60)
T cd00193           2 QERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADV   48 (60)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999864

>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.37  E-value=5.1e-07  Score=80.09  Aligned_cols=50  Identities=36%  Similarity=0.434  Sum_probs=46.4

Q ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhccc
Q 026817          174 RRMKQDQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKVILYSFV  223 (232)
Q Consensus       174 ~m~eQD~~LD~Is~~v~~Lk~~a~~Ig~EL~~Q~~mLDdLd~~mD~~~~~  223 (232)
                      .-.++|..|+.|+..+++||.||..||.||+.||..||.|...+|+..+.
T Consensus       212 ~edeiD~NL~qis~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d~~  261 (273)
T KOG3065|consen  212 AEDEIDENLDQLSAILGRLKNMALDMGSEIESQNERLDRIEDKVDRLDLR  261 (273)
T ss_pred             hhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHhhhhH
Confidence            33489999999999999999999999999999999999999999998764

>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.90  E-value=1.7e-05  Score=61.30  Aligned_cols=46  Identities=17%  Similarity=0.377  Sum_probs=44.2

Q ss_pred             HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhc
Q 026817          176 MKQDQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKVILYS  221 (232)
Q Consensus       176 ~eQD~~LD~Is~~v~~Lk~~a~~Ig~EL~~Q~~mLDdLd~~mD~~~  221 (232)
                      +|=|+.++.|..-|..||.++..||+|++.||.+||.|++++|+|+
T Consensus        32 ~ENee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts   77 (118)
T KOG3385|consen   32 RENEEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTS   77 (118)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhH
Confidence            6778999999999999999999999999999999999999999986

>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.14  E-value=2.3  Score=38.18  Aligned_cols=218  Identities=16%  Similarity=0.172  Sum_probs=115.7

Q ss_pred             CchHHHHHHHHHHHhhhhcCCh-hhccc-----CC-CCCCCchhhhHHHHHHHHHHHHHHHHHHHhh-------h-hhhh
Q 026817            1 MSVIDLITRVDAICKKYDKYDV-DKQKE-----LN-VYGDDAFARLYGVVQADLDAALQKSEAAATE-------K-NRAT   65 (232)
Q Consensus         1 ~~~~~~~~~~~~~~~k~~~~~~-~~~~~-----~~-~~~~DPF~~~~~~v~~ei~~~l~~a~~~~~~-------~-~~~~   65 (232)
                      ||+=|=-.-..+.|++|.+-.. .....     .+ +...--|...-.-+-.+|...-.+...+...       . .+-.
T Consensus         1 m~~rDRT~Ef~~~~~s~~~r~~~~~~~~~~p~~~~~~~~~seF~~~A~~Ig~~is~T~~kl~kLa~lAKrks~f~Dr~Ve   80 (311)
T KOG0812|consen    1 MSFRDRTSEFQAAVKSLKKRNATRGVNQADPGADKTVSQGSEFNKKASRIGKEISQTGAKLEKLAQLAKRKSLFDDRPVE   80 (311)
T ss_pred             CCcchhhHHHHHHHHHHHHHhhccccccCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchh
Confidence            4444544556788999998431 11111     01 1111246655555556777765555544331       1 1224


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCHHH-HHHHHHHHHHHHHHHHchhhhhhhc-------------c---
Q 026817           66 AVAMNAEIRRTKARLLEEVAKLQRLAFKKVKGLSKEE-LEARSDLVAALKDRIEGIPDGSTAA-------------A---  128 (232)
Q Consensus        66 ~~~~~aeir~~l~~L~~~L~dL~~~~~~~~~~lt~~E-l~rRr~~V~~l~~~i~~l~~~~~~~-------------~---  128 (232)
                      ...++--|+..+.+|...|.+|.... +..+..+..- ..-=+..|..|.+++..+...+..-             +   
T Consensus        81 I~eLT~iikqdi~sln~~i~~Lqei~-~~~gn~s~~~~~~Hs~~vV~~Lqs~la~is~~fk~VLE~Rtenmka~k~R~dk  159 (311)
T KOG0812|consen   81 IQELTFIIKQDITSLNSQIAQLQEIV-KANGNLSNKQLVQHSKNVVVSLQSKLANISKDFKDVLEIRTENMKAVKNRRDK  159 (311)
T ss_pred             hHHHHHHHhcchHHHHHHHHHHHHHH-HHhccccchHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHH
Confidence            56666678888999999988888763 3333444321 3334566666666665554443210             0   


Q ss_pred             --cccC-CCCCCCCCCCCccC------CCCCCCCCc-chhhhchhhhHHHHHHHHHHHhhhhh-------HHHHHHHHHH
Q 026817          129 --KQTG-GGTTSASYTGIKFD------TYSGGKFDD-EYFQETEESSGFRQEYEMRRMKQDQG-------LDVIGEGLDT  191 (232)
Q Consensus       129 --~~~~-~~~~~~~~~~~~~~------~~~~~~~~~-~~~~~t~~~~~~~q~Qq~~m~eQD~~-------LD~Is~~v~~  191 (232)
                        ++++ .++.+.+..+..+.      .|.+..-.+ .....++. ..-+|+|-.++.++|+.       +..|+.+|..
T Consensus       160 fs~~~a~~~a~p~~n~~a~~~~~~~l~~~~~~~sq~~~~ln~gd~-~~~qqqQm~ll~es~~Y~Q~R~~~~q~IEstIsE  238 (311)
T KOG0812|consen  160 FSASYASLNANPVSNSAARLHPLKLLVDPKDEASQDVESLNMGDS-SNPQQQQMALLDESDEYVQERAKTMQNIESTISE  238 (311)
T ss_pred             hccccCCCCCcccCcccccCCchhhhcCchhhcccccccccccCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              0101 00000000000000      000000000 00000000 01145666778888765       5678888999


Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHhhhhhhh
Q 026817          192 LKNMAHDMNEEIDRQVPMMDEIDEKVILY  220 (232)
Q Consensus       192 Lk~~a~~Ig~EL~~Q~~mLDdLd~~mD~~  220 (232)
                      |+++=..+..=+.+|++++--+|..||.+
T Consensus       239 lG~IF~QLA~mVseQ~E~i~RID~nv~ds  267 (311)
T KOG0812|consen  239 LGGIFQQLASMVSEQEETIQRIDDNVDDS  267 (311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcchhh
Confidence            99999999999999999999999999875

>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.36  E-value=2.9  Score=37.89  Aligned_cols=41  Identities=20%  Similarity=0.271  Sum_probs=37.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhc
Q 026817          181 GLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKVILYS  221 (232)
Q Consensus       181 ~LD~Is~~v~~Lk~~a~~Ig~EL~~Q~~mLDdLd~~mD~~~  221 (232)
                      .+-.|..+|..||+|=..|...++.|++|||.++..|.++.
T Consensus       207 ~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~  247 (297)
T KOG0810|consen  207 EIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAV  247 (297)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999998764

>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.50  E-value=9.9  Score=33.96  Aligned_cols=53  Identities=13%  Similarity=0.152  Sum_probs=48.9

Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhcc
Q 026817          170 EYEMRRMKQDQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKVILYSF  222 (232)
Q Consensus       170 ~Qq~~m~eQD~~LD~Is~~v~~Lk~~a~~Ig~EL~~Q~~mLDdLd~~mD~~~~  222 (232)
                      .|+.++++..+++..|...|..+.+|=..+|.=+.+|++++|.++..|++|+-
T Consensus       170 ~~~~~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~  222 (269)
T KOG0811|consen  170 YQLDLIEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASV  222 (269)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHH
Confidence            35678888999999999999999999999999999999999999999999863

>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]

Probab=89.80  E-value=1.2  Score=39.79  Aligned_cols=55  Identities=16%  Similarity=0.222  Sum_probs=50.6

Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhccc
Q 026817          169 QEYEMRRMKQDQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKVILYSFV  223 (232)
Q Consensus       169 q~Qq~~m~eQD~~LD~Is~~v~~Lk~~a~~Ig~EL~~Q~~mLDdLd~~mD~~~~~  223 (232)
                      ..|+-+..+=|+....|+.+|..|.+|=..||.=+.+|+.+.|.+|-.+++|++.
T Consensus       184 ~~qq~l~~er~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n  238 (283)
T COG5325         184 EYQQILITERDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDN  238 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHH
Confidence            3466778888999999999999999999999999999999999999999999864

>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C

Probab=80.13  E-value=10  Score=25.80  Aligned_cols=51  Identities=12%  Similarity=0.115  Sum_probs=41.9

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhc-cccchh
Q 026817          177 KQDQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKVILYS-FVGISQ  227 (232)
Q Consensus       177 eQD~~LD~Is~~v~~Lk~~a~~Ig~EL~~Q~~mLDdLd~~mD~~~-~~~~~~  227 (232)
                      +....|+.-...+...-++|..+-.+|..|.+.|......++.+. ++|.|.
T Consensus         5 ~e~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~   56 (66)
T PF12352_consen    5 RESDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSN   56 (66)
T ss_dssp             HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            444588899999999999999999999999999999999887653 344443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	232
1sfc_D	87	Protein (SNAP-25B), protein (synaptobrevin 2); mem	7e-13
1n7s_D	66	SNAP-25A; neuronal snare protein complex, four hel	2e-11
2nps_D	82	Syntaxin-6; vesicle fusion, snare complex, early e	1e-08
1l4a_D	87	S-SNAP25 fusion protein; snare, snare complex, mem	7e-07
1gl2_D	65	Syntaxin 8, vesicle transport V-snare protein VTI1	6e-06
2pff_A	1688	Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl	9e-05
3b5n_D	64	Protein transport protein SEC9; snare complex, syn	2e-04

>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 Length = 87

 Score = 61.4 bits (149), Expect = 7e-13
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 159 QETEESSGFRQEY--EMRRMKQDQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEK 216
           ++   S GF +    + R  + D+ L+ +   +  L++MA DM  EID Q   +D I EK
Sbjct: 6   EQMAISGGFIRRVTNDARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEK 65

Query: 217 V 217
            
Sbjct: 66  A 66

>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B Length = 66

 Score = 57.0 bits (138), Expect = 2e-11
 Identities = 16/46 (34%), Positives = 24/46 (52%)

Query: 172 EMRRMKQDQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKV 217
             R  + D+ L+ +   +  L++MA DM  EID Q   +D I EK 
Sbjct: 2   SARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKA 47

>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens} Length = 82

 Score = 49.8 bits (119), Expect = 1e-08
 Identities = 10/41 (24%), Positives = 24/41 (58%)

Query: 177 KQDQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKV 217
            QD+ L+++   +  LKNM+  +  E++ Q  M+++   ++
Sbjct: 16  MQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHEL 56

>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Length = 87

 Score = 45.0 bits (106), Expect = 7e-07
 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 2/61 (3%)

Query: 159 QETEESSGFRQEY--EMRRMKQDQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEK 216
                SSG+      + R    +  +  +   +  L+NMA DM  EI  Q   +D I +K
Sbjct: 7   NGMGPSSGYVTRITNDAREDDMENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQK 66

Query: 217 V 217
            
Sbjct: 67  A 67

>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1 Length = 65

 Score = 41.7 bits (98), Expect = 6e-06
 Identities = 12/41 (29%), Positives = 22/41 (53%)

Query: 177 KQDQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKV 217
           +QD GLD +   +   K M  ++  E+D Q  ++D++   V
Sbjct: 6   EQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLV 46

>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688

 Score = 42.2 bits (99), Expect = 9e-05
 Identities = 32/193 (16%), Positives = 56/193 (29%), Gaps = 43/193 (22%)

Query: 77   KARLLEEVAKLQRLAFKKVKGLSKEELEARSDLVAALKDRIEGIPDGSTAAAKQTG-GGT 135
            K  +++EV   + L   +    SKE  E          D+++      T         G 
Sbjct: 919  KKEMIQEVIVEEDLEPFEA---SKETAEQ---FKHQHGDKVDIFEIPETGEYSVKLLKGA 972

Query: 136  TSASYTGIKFDTYSGG----KFD-DEYFQETEE--------------------SSGFRQE 170
            T      ++FD    G     ++   Y    +                     +SG    
Sbjct: 973  TLYIPKALRFDRLVAGQIPTGWNAKTYGISDDIISQVDPITLFVLVSVVEAFIASGITDP 1032

Query: 171  YE-MRRMKQDQGLDVIGE---GLDTLKNMAHDMNEEIDRQ----VPMM--DEIDEKV-IL 219
            YE  + +   +  +  G    G+  L+ M  D  ++   Q                  +L
Sbjct: 1033 YEMYKYVHVSEVGNCSGSGMGGVSALRGMFKDRFKDEPVQNDILQESFINTMSAWVNMLL 1092

Query: 220  YSFVGISQCVVGA 232
             S  G  +  VGA
Sbjct: 1093 ISSSGPIKTPVGA 1105

>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} Length = 64

 Score = 37.9 bits (88), Expect = 2e-04
 Identities = 13/39 (33%), Positives = 21/39 (53%)

Query: 179 DQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKV 217
           D+ LD I +  + LK MA    +E+D Q   ++ I+E  
Sbjct: 9   DRNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEEST 47

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	232
2nps_D	82	Syntaxin-6; vesicle fusion, snare complex, early e	99.6
1gl2_D	65	Syntaxin 8, vesicle transport V-snare protein VTI1	99.52
4dnd_A	130	Syntaxin-10, SYN10; structural genomics, protein s	99.51
1n7s_D	66	SNAP-25A; neuronal snare protein complex, four hel	99.39
1sfc_D	87	Protein (SNAP-25B), protein (synaptobrevin 2); mem	99.38
1l4a_D	87	S-SNAP25 fusion protein; snare, snare complex, mem	99.31
2c5k_T	95	Syntaxin TLG1, T-snare affecting A late golgi comp	99.27
3b5n_D	64	Protein transport protein SEC9; snare complex, syn	99.19
1dn1_B	267	Syntaxin 1A, syntaxin binding protein 1; protein-p	96.81
3hd7_B	109	Syntaxin-1A; membrane protein, coiled-coil, 4-heli	96.8
2xhe_B	279	Syntaxin1; exocytosis, exocytosis complex, snare,	95.92
1jth_B	77	Syntaxin 1A; coiled-coil, polar layer, endocytosis	95.01
3b5n_B	69	Protein SSO1; snare complex, syntaxin, synaptobrev	94.47
1gl2_B	65	Syntaxin 7; membrane protein, membrane fusion prot	94.46
2nps_B	71	Syntaxin 13, vesicle-associated membrane protein 4	94.45
1sfc_B	83	Protein (syntaxin 1A), protein (synaptobrevin 2);	93.9
1n7s_B	68	Syntaxin 1A; neuronal snare protein complex, four	93.78
3c98_B	279	Syntaxin-1A; protein complex, alternative splicing	91.33
1ez3_A	127	Syntaxin-1A; three helix bundle, endocytosis/exocy	91.06
1s94_A	180	S-syntaxin; three helix bundle, structural plastic	88.93
1n7s_C	79	SNAP-25A; neuronal snare protein complex, four hel	80.78

>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}

Probab=99.60  E-value=7.1e-16  Score=112.34  Aligned_cols=56  Identities=18%  Similarity=0.265  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhcc
Q 026817          167 FRQEYEMRRMKQDQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKVILYSF  222 (232)
Q Consensus       167 ~~q~Qq~~m~eQD~~LD~Is~~v~~Lk~~a~~Ig~EL~~Q~~mLDdLd~~mD~~~~  222 (232)
                      +.|+|+++|++||++||.|+.+|++||+||..||+||+.||.|||+|+++||+|+.
T Consensus         6 ~~q~Q~~~~~eQD~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~   61 (82)
T 2nps_D            6 SMTGGNNMGRMQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQS   61 (82)
T ss_dssp             ------------CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            45889999999999999999999999999999999999999999999999999874

>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1

Probab=99.52  E-value=1.2e-14  Score=101.21  Aligned_cols=50  Identities=24%  Similarity=0.366  Sum_probs=43.0

Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhcc
Q 026817          173 MRRMKQDQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKVILYSF  222 (232)
Q Consensus       173 ~~m~eQD~~LD~Is~~v~~Lk~~a~~Ig~EL~~Q~~mLDdLd~~mD~~~~  222 (232)
                      ++|++||++||.|+.+|++||+||..||+||+.||.|||+|+++||+++.
T Consensus         2 ~~~~eqD~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~   51 (65)
T 1gl2_D            2 SHMQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDE   51 (65)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999874

>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A

Probab=99.51  E-value=1.3e-13  Score=108.62  Aligned_cols=89  Identities=16%  Similarity=0.192  Sum_probs=73.2

Q ss_pred             CCCchhhhHHHHHHHHHHHHHHHHHHHhhh--h---h------hhHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhhc
Q 026817           32 GDDAFARLYGVVQADLDAALQKSEAAATEK--N---R------ATAVAMNAEIRRTKARLLEEVAKLQRLA-----FKKV   95 (232)
Q Consensus        32 ~~DPF~~~~~~v~~ei~~~l~~a~~~~~~~--~---~------~~~~~~~aeir~~l~~L~~~L~dL~~~~-----~~~~   95 (232)
                      ..|||    |.|++||+++++++++++..-  .   +      ...|+.+ ||+..|++|+|+|+||++++     .+.+
T Consensus        25 ~~DPF----~~Vk~EVq~sl~~l~~l~~~w~~l~~~~~~~s~~E~~~~~~-EL~~~l~sie~dLeDLe~sI~ivE~np~k   99 (130)
T 4dnd_A           25 LEDPF----FVVRGEVQKAVNTARGLYQRWCELLQESAAVGREELDWTTN-ELRNGLRSIEWDLEDLEETIGIVEANPGK   99 (130)
T ss_dssp             --CCH----HHHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred             CCCCc----HHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCHHh
Confidence            57999    788999999999999888731  1   1      1346555 99999999999999999873     3378


Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHchhhhhh
Q 026817           96 KGLSKEELEARSDLVAALKDRIEGIPDGST  125 (232)
Q Consensus        96 ~~lt~~El~rRr~~V~~l~~~i~~l~~~~~  125 (232)
                      |+|++.|+.+|+.||.+++.++..|+..++
T Consensus       100 F~l~~~Ei~~Rr~fV~~~r~~I~~mk~~l~  129 (130)
T 4dnd_A          100 FKLPAGDLQERKVFVERMREAVQEMKDHMV  129 (130)
T ss_dssp             HCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999998764

>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B

Probab=99.39  E-value=6e-13  Score=92.85  Aligned_cols=49  Identities=33%  Similarity=0.386  Sum_probs=46.7

Q ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhcc
Q 026817          174 RRMKQDQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKVILYSF  222 (232)
Q Consensus       174 ~m~eQD~~LD~Is~~v~~Lk~~a~~Ig~EL~~Q~~mLDdLd~~mD~~~~  222 (232)
                      +..+||+.||.|+.+|++||+||..||+||+.||.|||+|+.+||+++.
T Consensus         4 ~e~eqD~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~   52 (66)
T 1n7s_D            4 RENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKT   52 (66)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            5579999999999999999999999999999999999999999999875

>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1

Probab=99.38  E-value=5.7e-13  Score=97.96  Aligned_cols=51  Identities=31%  Similarity=0.384  Sum_probs=48.3

Q ss_pred             HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhcc
Q 026817          172 EMRRMKQDQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKVILYSF  222 (232)
Q Consensus       172 q~~m~eQD~~LD~Is~~v~~Lk~~a~~Ig~EL~~Q~~mLDdLd~~mD~~~~  222 (232)
                      ..+.++||+.||.|+.+|++||+||..||+||+.||.|||+|+.+||+++.
T Consensus        21 d~~e~eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~   71 (87)
T 1sfc_D           21 DARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKT   71 (87)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            357789999999999999999999999999999999999999999999875

>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1

Probab=99.31  E-value=2.1e-12  Score=94.90  Aligned_cols=50  Identities=26%  Similarity=0.328  Sum_probs=47.1

Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhcc
Q 026817          173 MRRMKQDQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKVILYSF  222 (232)
Q Consensus       173 ~~m~eQD~~LD~Is~~v~~Lk~~a~~Ig~EL~~Q~~mLDdLd~~mD~~~~  222 (232)
                      .+..+||+.||.|+.+|++||+||..||+||+.||+|||+|+++||++++
T Consensus        23 ~~e~eqD~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~   72 (87)
T 1l4a_D           23 AREDDMENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNES   72 (87)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35668999999999999999999999999999999999999999999875

>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T

Probab=99.27  E-value=6.6e-12  Score=93.69  Aligned_cols=88  Identities=18%  Similarity=0.251  Sum_probs=66.1

Q ss_pred             CCCchhhhHHHHHHHHHHHHHHHHHHHhhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHH
Q 026817           32 GDDAFARLYGVVQADLDAALQKSEAAATEKNR-ATAVAMNAEIRRTKARLLEEVAKLQRLAFKKVKGLSKEELEARSDLV  110 (232)
Q Consensus        32 ~~DPF~~~~~~v~~ei~~~l~~a~~~~~~~~~-~~~~~~~aeir~~l~~L~~~L~dL~~~~~~~~~~lt~~El~rRr~~V  110 (232)
                      +.|||    |.|++++...|..++.+...++. ...|+.+ ||+..|..|+|+|.||++++...... +++||.+|+.||
T Consensus         4 s~DPF----~~V~~D~~~ql~~l~~~~~~~~~~~~~~~~~-El~~~l~el~e~l~DL~~SI~i~e~~-~~~EI~~Rk~~v   77 (95)
T 2c5k_T            4 SEDPF----QQVVKDTKEQLNRINNYITRHNTAGDDDQEE-EIQDILKDVEETIVDLDRSIIVMKRD-ENEDVSGREAQV   77 (95)
T ss_dssp             -CCHH----HHHHHHHHHHHHHHHHHHHHTCCC--CTTHH-HHHHHHHHHHHHHHHHHHHHHHHHTS-TTCCCHHHHHHH
T ss_pred             CCCcH----HHHHHHHHHHHHHHHHHHHHccCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHH
Confidence            56999    56666666666666666543221 1235555 99999999999999999984332222 999999999999


Q ss_pred             HHHHHHHHchhhhhh
Q 026817          111 AALKDRIEGIPDGST  125 (232)
Q Consensus       111 ~~l~~~i~~l~~~~~  125 (232)
                      ..++.++..|+..++
T Consensus        78 ~~l~~~i~~lk~~~~   92 (95)
T 2c5k_T           78 KNIKQQLDALKLRFD   92 (95)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999998875

>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}

Probab=99.19  E-value=3.7e-11  Score=83.32  Aligned_cols=49  Identities=27%  Similarity=0.338  Sum_probs=45.9

Q ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhcc
Q 026817          174 RRMKQDQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKVILYSF  222 (232)
Q Consensus       174 ~m~eQD~~LD~Is~~v~~Lk~~a~~Ig~EL~~Q~~mLDdLd~~mD~~~~  222 (232)
                      +-.+||+.|+.|+..+++||+||.+||+||+.||.+||.|..++|++..
T Consensus         4 ~E~e~D~nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~   52 (64)
T 3b5n_D            4 MELEIDRNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDI   52 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            4468999999999999999999999999999999999999999998764

>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B

Probab=96.81  E-value=0.036  Score=47.78  Aligned_cols=187  Identities=13%  Similarity=0.146  Sum_probs=104.5

Q ss_pred             CCCchhhhHHHHHHHHHHHHHHHHHHHhh----h------------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-h
Q 026817           32 GDDAFARLYGVVQADLDAALQKSEAAATE----K------------NRATAVAMNAEIRRTKARLLEEVAKLQRLAFK-K   94 (232)
Q Consensus        32 ~~DPF~~~~~~v~~ei~~~l~~a~~~~~~----~------------~~~~~~~~~aeir~~l~~L~~~L~dL~~~~~~-~   94 (232)
                      ..|||+..|+.-.++|+..+........+    .            .+.....+..++......+...|..|+..... .
T Consensus        25 ~~~~~m~~F~~~v~~I~~~I~~I~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~l~~~i~~~~~~i~~~Lk~l~~~~~~~~  104 (267)
T 1dn1_B           25 DRDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEE  104 (267)
T ss_dssp             --CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            44677777777776766655544433221    0            01111223345555555666666666654221 1


Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHchhhhhhhcc------------cc--cCCCCCCCCCCCCccCCCCCCCCCcchhhh
Q 026817           95 VKGLSKEELEARSDLVAALKDRIEGIPDGSTAAA------------KQ--TGGGTTSASYTGIKFDTYSGGKFDDEYFQE  160 (232)
Q Consensus        95 ~~~lt~~El~rRr~~V~~l~~~i~~l~~~~~~~~------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (232)
                      ...-+..+.+-|+..+..|..++..+-..|....            +.  ..++.++...-......+....|......+
T Consensus       105 ~~~~~~~e~Rirk~q~~~L~~~f~~~m~~yq~~Q~~y~e~~k~~i~Rq~~i~~~~~tdeeie~~ie~g~~~~f~q~~l~~  184 (267)
T 1dn1_B          105 GLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQRQLEITGRTTTSEELEDMLESGNPAIFASGIIMD  184 (267)
T ss_dssp             HTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTCSSCTTTTTCCCC
T ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccCCCCCHHHHHHHHhCCcHHHHHHHHHHh
Confidence            1234567788899999999999988877765321            00  011111000000000000001111111111


Q ss_pred             chhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhcc
Q 026817          161 TEESSGFRQEYEMRRMKQDQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKVILYSF  222 (232)
Q Consensus       161 t~~~~~~~q~Qq~~m~eQD~~LD~Is~~v~~Lk~~a~~Ig~EL~~Q~~mLDdLd~~mD~~~~  222 (232)
                      +..   . .+.-..+++-...+-.|..+|..|++|=..|+.=|.+|+.|||.++..|+.+..
T Consensus       185 ~~~---~-~~~l~~i~~R~~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a~~  242 (267)
T 1dn1_B          185 SSI---S-KQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVD  242 (267)
T ss_dssp             SHH---H-HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCC
T ss_pred             hHH---H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            111   0 111245667778899999999999999999999999999999999999988753

>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B

Probab=96.80  E-value=0.0033  Score=47.37  Aligned_cols=50  Identities=18%  Similarity=0.153  Sum_probs=46.2

Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhcc
Q 026817          173 MRRMKQDQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKVILYSF  222 (232)
Q Consensus       173 ~~m~eQD~~LD~Is~~v~~Lk~~a~~Ig~EL~~Q~~mLDdLd~~mD~~~~  222 (232)
                      ..+++.++.+..|..+|..|+++-..|+..+.+|++|||.++..|+.+..
T Consensus        14 ~~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~   63 (109)
T 3hd7_B           14 SEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVD   63 (109)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999998753

>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}

Probab=95.92  E-value=0.053  Score=46.83  Aligned_cols=147  Identities=13%  Similarity=0.112  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh--hc----cCCCHHHHHHHHHHHHHHHHHHHchhhhhhhcc-------cccCCCC
Q 026817           69 MNAEIRRTKARLLEEVAKLQRLAFK--KV----KGLSKEELEARSDLVAALKDRIEGIPDGSTAAA-------KQTGGGT  135 (232)
Q Consensus        69 ~~aeir~~l~~L~~~L~dL~~~~~~--~~----~~lt~~El~rRr~~V~~l~~~i~~l~~~~~~~~-------~~~~~~~  135 (232)
                      +..+|...+..+...|..|......  ..    .+.+..|..-|+..+..|..++..+-..|....       +....+.
T Consensus        93 l~~~i~~~~~~i~~~lk~l~~~~~~~~~~~~~~~~~~~~e~r~~k~~~~~L~~~f~~~~~~Fq~~Q~~y~e~~k~~~~R~  172 (279)
T 2xhe_B           93 TMARISALGNKIRADLKQIEKENKRAQQEGTFEDGTVSTDLRIRQSQHSSLSRKFVKVMTRYNDVQAENKRRYGENVARQ  172 (279)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHCCSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3345555566666666666654211  11    122222778899999999999988877765321       0000000


Q ss_pred             CCCCCCCCccCCCCCCCCCcchhhhchhhhHHHHHH-------HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026817          136 TSASYTGIKFDTYSGGKFDDEYFQETEESSGFRQEY-------EMRRMKQDQGLDVIGEGLDTLKNMAHDMNEEIDRQVP  208 (232)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~q~Q-------q~~m~eQD~~LD~Is~~v~~Lk~~a~~Ig~EL~~Q~~  208 (232)
                      -....+    .. .....  ....++.....|.+.+       -..+++=...+-.|..+|..|++|=..|+.=|.+|+.
T Consensus       173 ~~i~~~----~~-~~ee~--~~~~e~g~~~~f~q~~~~~~~~~~~~i~eR~~eI~~Ie~~i~el~~if~dla~lV~~Qg~  245 (279)
T 2xhe_B          173 CRVVEP----SL-SDDAI--QKVIEHGTEGIFSGMRLEGAEAKLNEIRDRHKDIQQLERSLLELHEMFTDMSTLVASQGE  245 (279)
T ss_dssp             CCSSCC----CC-SSTTH--HHHHHHC-----------------CTTTHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSCS
T ss_pred             HHHhCC----CC-CHHHH--HHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            000000    00 00000  0001111112232100       0134455678999999999999999999999999999


Q ss_pred             hHHHHhhhhhhhcc
Q 026817          209 MMDEIDEKVILYSF  222 (232)
Q Consensus       209 mLDdLd~~mD~~~~  222 (232)
                      |||.++..|+.+..
T Consensus       246 ~id~Ie~nv~~~~~  259 (279)
T 2xhe_B          246 MIDRIEFSVEQSHN  259 (279)
T ss_dssp             STTCHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998864

>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B

Probab=95.01  E-value=0.081  Score=37.01  Aligned_cols=49  Identities=18%  Similarity=0.166  Sum_probs=43.9

Q ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhcc
Q 026817          174 RRMKQDQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKVILYSF  222 (232)
Q Consensus       174 ~m~eQD~~LD~Is~~v~~Lk~~a~~Ig~EL~~Q~~mLDdLd~~mD~~~~  222 (232)
                      .+++-.+.+..|..+|..|++|=..|..=+.+|+.|||.++..|+.+..
T Consensus         4 ~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~   52 (77)
T 1jth_B            4 EIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVD   52 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            3456677889999999999999999999999999999999999998753

>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1

Probab=94.47  E-value=0.14  Score=35.02  Aligned_cols=49  Identities=22%  Similarity=0.222  Sum_probs=43.8

Q ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhcc
Q 026817          174 RRMKQDQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKVILYSF  222 (232)
Q Consensus       174 ~m~eQD~~LD~Is~~v~~Lk~~a~~Ig~EL~~Q~~mLDdLd~~mD~~~~  222 (232)
                      .+++-...+-.|..+|..|++|=..|+.=+.+|+.|||.++..|+.+..
T Consensus         4 ~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~   52 (69)
T 3b5n_B            4 EVQARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQL   52 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            3456667889999999999999999999999999999999999998753

>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1

Probab=94.46  E-value=0.083  Score=35.83  Aligned_cols=47  Identities=13%  Similarity=0.239  Sum_probs=42.0

Q ss_pred             HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhcc
Q 026817          176 MKQDQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKVILYSF  222 (232)
Q Consensus       176 ~eQD~~LD~Is~~v~~Lk~~a~~Ig~EL~~Q~~mLDdLd~~mD~~~~  222 (232)
                      ++-...+..|..+|..|++|=..|..=+.+|+.|||.++..|+.+..
T Consensus         5 ~eR~~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~   51 (65)
T 1gl2_B            5 HERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEV   51 (65)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456778999999999999999999999999999999999998753

>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}

Probab=94.45  E-value=0.094  Score=36.14  Aligned_cols=44  Identities=14%  Similarity=0.237  Sum_probs=40.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhcc
Q 026817          179 DQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKVILYSF  222 (232)
Q Consensus       179 D~~LD~Is~~v~~Lk~~a~~Ig~EL~~Q~~mLDdLd~~mD~~~~  222 (232)
                      .+.+..|..+|..|++|=..|..=+.+|+.|||.++..|+.+..
T Consensus         5 ~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~   48 (71)
T 2nps_B            5 ETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEV   48 (71)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            45678899999999999999999999999999999999998763

>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B

Probab=93.90  E-value=0.2  Score=35.56  Aligned_cols=50  Identities=18%  Similarity=0.153  Sum_probs=45.1

Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhcc
Q 026817          173 MRRMKQDQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKVILYSF  222 (232)
Q Consensus       173 ~~m~eQD~~LD~Is~~v~~Lk~~a~~Ig~EL~~Q~~mLDdLd~~mD~~~~  222 (232)
                      ..+++-...+-.|..+|..|++|=..|+.=+.+|+.|||.++..|+.+..
T Consensus        14 ~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~   63 (83)
T 1sfc_B           14 SEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVD   63 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            35667777899999999999999999999999999999999999998753

>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B

Probab=93.78  E-value=0.24  Score=33.72  Aligned_cols=49  Identities=18%  Similarity=0.166  Sum_probs=44.0

Q ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhcc
Q 026817          174 RRMKQDQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKVILYSF  222 (232)
Q Consensus       174 ~m~eQD~~LD~Is~~v~~Lk~~a~~Ig~EL~~Q~~mLDdLd~~mD~~~~  222 (232)
                      .+++-...+-.|..+|..|++|=..|..=+.+|+.|||.++..|+.+..
T Consensus         6 ~i~eR~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~   54 (68)
T 1n7s_B            6 EIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVD   54 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            4556677899999999999999999999999999999999999998753

>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}

Probab=91.33  E-value=5.2  Score=32.98  Aligned_cols=50  Identities=18%  Similarity=0.153  Sum_probs=45.0

Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhcc
Q 026817          173 MRRMKQDQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKVILYSF  222 (232)
Q Consensus       173 ~~m~eQD~~LD~Is~~v~~Lk~~a~~Ig~EL~~Q~~mLDdLd~~mD~~~~  222 (232)
                      ..+.+-...|..|..+|..+.++-..|..-+++|+.+++.++..|+.++.
T Consensus       205 ~~i~~~~~~i~~I~~~i~ei~~~~~~ia~~v~eQ~~~~~~I~~nv~~~~~  254 (279)
T 3c98_B          205 SEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVD  254 (279)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666778899999999999999999999999999999999999988754

>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*

Probab=91.06  E-value=3.7  Score=30.50  Aligned_cols=58  Identities=12%  Similarity=0.193  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh-hccCCCHHHHHHHHHHHHHHHHHHHchhhhhhh
Q 026817           69 MNAEIRRTKARLLEEVAKLQRLAFK-KVKGLSKEELEARSDLVAALKDRIEGIPDGSTA  126 (232)
Q Consensus        69 ~~aeir~~l~~L~~~L~dL~~~~~~-~~~~lt~~El~rRr~~V~~l~~~i~~l~~~~~~  126 (232)
                      +..++......+...|..|+..... ...+-+..+.+-|+..+..|..++..+-..++.
T Consensus        55 l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~Rir~~q~~~L~~kf~e~m~~y~~  113 (127)
T 1ez3_A           55 LMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNA  113 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3346666677777777777755222 222345667888999999999999888777753

>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1

Probab=88.93  E-value=4.1  Score=32.41  Aligned_cols=94  Identities=10%  Similarity=0.147  Sum_probs=54.8

Q ss_pred             CCchhhhHHHHHHHHHHHHHHHHHHHhh----hhh------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hc
Q 026817           33 DDAFARLYGVVQADLDAALQKSEAAATE----KNR------------ATAVAMNAEIRRTKARLLEEVAKLQRLAFK-KV   95 (232)
Q Consensus        33 ~DPF~~~~~~v~~ei~~~l~~a~~~~~~----~~~------------~~~~~~~aeir~~l~~L~~~L~dL~~~~~~-~~   95 (232)
                      .|||+..|+.-.++|+..|........+    ..+            .....+..++......+...|..|++.... ..
T Consensus        34 ~~~~m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~  113 (180)
T 1s94_A           34 GGGFMEEFFEQVEEIRAMIDKISDNVDAVKKKHSDILSAPQTDDQMKEELEELMTDIKRTANKVRGKLKTIELNIEQEEH  113 (180)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            5788777776666666665555433331    000            111233345666666666777777655222 11


Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHchhhhhhh
Q 026817           96 KGLSKEELEARSDLVAALKDRIEGIPDGSTA  126 (232)
Q Consensus        96 ~~lt~~El~rRr~~V~~l~~~i~~l~~~~~~  126 (232)
                      .+-+..+.+-|+..+..|..++..+-..|+.
T Consensus       114 ~~~~s~~~Rir~~q~~~L~~kf~~~m~~yq~  144 (180)
T 1s94_A          114 SNKSSADLRIRKTQYSTISRKFVEVMSDYNT  144 (180)
T ss_dssp             ----CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2345567788999999999999998888764

>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A

Probab=80.78  E-value=12  Score=26.07  Aligned_cols=55  Identities=15%  Similarity=0.122  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHhhhhhhhc
Q 026817          167 FRQEYEMRRMKQDQGLDVIGEGLD---TLKNMAHDMNEEIDRQVPMMDEIDEKVILYS  221 (232)
Q Consensus       167 ~~q~Qq~~m~eQD~~LD~Is~~v~---~Lk~~a~~Ig~EL~~Q~~mLDdLd~~mD~~~  221 (232)
                      +++.+++....+++.++.+-.++.   .-.++|..+-.+|..|.+-|+.....+|..+
T Consensus         7 ~q~l~~~~~~~~~~s~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~   64 (79)
T 1n7s_C            7 LEEMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHIN   64 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHH
Confidence            345566777778888888877766   4556899999999999999999888888654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	232
d1lvfa_	106	Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicu	99.51
d1ez3a_	124	Syntaxin 1A N-terminal domain {Rat (Rattus norvegi	92.35

>d1lvfa_ a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Syntaxin 6, SNAP-25 homolog
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.51  E-value=9.2e-14  Score=103.98  Aligned_cols=89  Identities=17%  Similarity=0.271  Sum_probs=75.3

Q ss_pred             CCchhhhHHHHHHHHHHHHHHHHHHHhh--h---------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhhcc
Q 026817           33 DDAFARLYGVVQADLDAALQKSEAAATE--K---------NRATAVAMNAEIRRTKARLLEEVAKLQRLA-----FKKVK   96 (232)
Q Consensus        33 ~DPF~~~~~~v~~ei~~~l~~a~~~~~~--~---------~~~~~~~~~aeir~~l~~L~~~L~dL~~~~-----~~~~~   96 (232)
                      +|||    |.|++||+..+.++++++..  .         ++...+..+ +|+..|+.++|+|.+|++++     .+.+|
T Consensus         1 eDPF----~~v~~EVq~s~~~~~~l~~~w~~~~~~~~~~~~~e~~~~~~-eL~~~l~siewdL~dLe~av~~ve~np~kf   75 (106)
T d1lvfa_           1 EDPF----FVVKGEVQKAVNTAQGLFQRWTELLQGPSAATREEIDWTTN-ELRNNLRSIEWDLEDLDETISIVEANPRKF   75 (106)
T ss_dssp             CCHH----HHHHHHHHHHHHHHHHHHHHHHHHTTCTTSCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred             CCCc----HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHhCHHhc
Confidence            5999    88999999999999988873  1         112345555 99999999999999999873     23789


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHchhhhhhh
Q 026817           97 GLSKEELEARSDLVAALKDRIEGIPDGSTA  126 (232)
Q Consensus        97 ~lt~~El~rRr~~V~~l~~~i~~l~~~~~~  126 (232)
                      +|++.|+.+|+.||..++.+|..|++.+++
T Consensus        76 ~l~~~ei~~Rr~fi~~~~~~I~~~~~~l~~  105 (106)
T d1lvfa_          76 NLDATELSIRKAFITSTRQIVRDMKDQMSA  105 (106)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999988764

>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Syntaxin 1A N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.35  E-value=1.2  Score=31.44  Aligned_cols=55  Identities=11%  Similarity=0.185  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhh-hccCCCHHHHHHHHHHHHHHHHHHHchhhhhh
Q 026817           71 AEIRRTKARLLEEVAKLQRLAFK-KVKGLSKEELEARSDLVAALKDRIEGIPDGST  125 (232)
Q Consensus        71 aeir~~l~~L~~~L~dL~~~~~~-~~~~lt~~El~rRr~~V~~l~~~i~~l~~~~~  125 (232)
                      .++...-..+...|..|++.+.. ...+-+..+.+-|+..+..|...+..+-..++
T Consensus        55 ~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~Rir~~q~~~L~~kf~e~m~~yq  110 (124)
T d1ez3a_          55 SDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRKTQHSTLSRKFVEVMSEYN  110 (124)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35555566666777777765322 22345567899999999999999988876665