Citrus Sinensis ID: 026847

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230--
Protein Sequence
MQEPSLGVMGSSSSGGGGGGGDVSGHHDQTATVQLIKAEIASHPLYEQLLAAHVSCLRVATPIDQLPLIDAQLAQSHHVLRSYGSLQQANNNNNHSLSPHERQELDNFLAQYLIVLCTFKEQLQQHVRVHAVEAVMGCREIENTLQALTGVSLGEGTGATMSDDEDDLHMDFSLDQSASDSHDLMGFGPLLPTETERSLMERVRQELKIELKQVMTTYIYIYIYINITITTQ
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHcHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccEEEEEEEEEEEEEcc
Coil and Loop (DISEMBL)
mqepslgvmgssssgggggggdvsghhdQTATVQLIKAEIASHPLYEQLLAAHVSCLrvatpidqlplIDAQLAQSHHVLRSYGslqqannnnnhslspheRQELDNFLAQYLIVLCTFKEQLQQHVRVHAVEAVMGCREIENTLQALTgvslgegtgatmsddeddlhmdfsldqsasdshdlmgfgpllpteTERSLMERVRQELKIELKQVMTTYIYIYIYINITITTQ
Flexible Loop (DISEMBL)
MQEPSLGVMGSSSSGGGGGGGDVSGHHDQTATVQLIKAEIASHPLYEQLLAAHVSCLRVATPIDQLPLIDAQLAQSHHVLRSYGSLQQANNNNNHSLSPHERQELDNFLAQYLIVLCTFKEQLQQHVRVHAVEAVMGCREIENTLQALTGVSLGEGTGATMSDDEDDLHMDFSLDQSASDSHDLMGFGPLLPTETERSLMERVRQELKIELKQVMTTYIYIYIYINITITTQ
Low Complexity Region (SEG)
MQEPslgvmgssssgggggggdvsgHHDQTATVQLIKAEIASHPLYEQLLAAHVSCLRVATPIDQLPLIDAQLAQSHHVLRSYGSLQQANNNNNHSLSPHERQELDNFLAQYLIVLCTFKEQLQQHVRVHAVEAVMGCREIENTLQALTGVSLGEGTGATMSDDEDDLHMDFSLDQSASDSHDLMGFGPLLPTETERSLMERVRQELKIELKQVMttyiyiyiyinitittQ
Disordered region (IsUnstruct)
*******************************TVQLIKAEIASHPLYEQLLAAHVSCLRVATPIDQLPLIDAQLAQSHHVL*************************DNFLAQYLIVLCTFKEQLQQHVRVHAVEAVMGCREIENTLQALTGVSL*************************************************VRQELKIELKQVMTTYIYIYIYINITIT**
Disordered Region (DISOPRED)
*************************************AEIASHPLYEQLLAAHVSCLRVATPIDQLPLIDAQLA*****************************ELDNFLAQYLIVLCTFKEQLQQHVRVHAVEAVMGCREIENTL******************************************************************KQVMTTYIYIYIYINIT****
Disordered Region (DISEMBL)
**********************VSGHHDQTATVQLIKAEIASHPLYEQLLAAHVSCLRVATPIDQLPLIDAQLAQSHHVLRSYGSLQQANNNNNHSLSPHERQELDNFLAQYLIVLCTFKEQLQQHVRVHAVEAVMGCREIENTLQALTGVSLGEGTGATMSDDEDDLHMDFSLDQSASDSHDLMGFGPLLPTETERSLMERVRQELKIELKQVMTTYIYIYIYINITITTQ
Disordered Region (DISPRO)
*******************************TVQLIKAEIASHPLYEQLLAAHVSCLRVATPIDQLPLIDAQLAQSHHVLRSYGSLQ************HERQELDNFLAQYLIVLCTFKEQLQQHVRVHAVEAVMGCREIENTLQALT*************************************FGPLLPTETERSLMERVRQELKIELKQVMTTYIYIYIYINITITTQ
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQEPSLGVMGSSSSGGGGGGGDVSGHHDQTATVQLIKAEIASHPLYEQLLAAHVSCLRVATPIDQLPLIDAQLAQSHHVLRSYGSLQQANNNNNHSLSPHERQELDNFLAQYLIVLCTFKEQLQQHVRVHAVEAVMGCREIENTLQALTGVSLGEGTGATMSDDEDDLHMDFSLDQSASDSHDLMGFGPLLPTETERSLMERVRQELKIELKQVMTTYIYIYIYINITITTQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	232	2.2.26 [Sep-21-2011]
Q9FPQ8	291	Homeobox protein knotted-	yes	no	0.879	0.701	0.648	1e-75
P46606	294	Homeobox protein HD1 OS=B	N/A	no	0.762	0.602	0.705	9e-73
Q94LW3	314	Homeobox protein knotted-	yes	no	0.771	0.570	0.670	3e-65
P48000	431	Homeobox protein knotted-	no	no	0.831	0.447	0.569	1e-58
P48001	393	Homeobox protein knotted-	no	no	0.706	0.417	0.628	2e-58
O04136	427	Homeobox protein knotted-	N/A	no	0.728	0.395	0.629	2e-53
Q0J6N4	374	Homeobox protein knotted-	no	no	0.724	0.449	0.617	4e-53
P48002	383	Homeobox protein knotted-	no	no	0.775	0.469	0.551	1e-51
O22300	426	Homeobox protein knotted-	N/A	no	0.728	0.396	0.620	2e-51
Q0E3C3	313	Homeobox protein knotted-	no	no	0.728	0.539	0.584	1e-48

>sp|Q9FPQ8|KNAT7_ARATH Homeobox protein knotted-1-like 7 OS=Arabidopsis thaliana GN=KNAT7 PE=2 SV=1

 Score =  282 bits (722), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 144/222 (64%), Positives = 172/222 (77%), Gaps = 18/222 (8%)

Query: 1   MQEPSLGVMGSSSSGGGGGGGDVSGHHDQTATVQLIKAEIASHPLYEQLLAAHVSCLRVA 60
           MQE +LG+MG++     GG GD +   +Q    + +K EIA+HP+YEQLLAAHV+CLRVA
Sbjct: 1   MQEAALGMMGATV----GGDGDTAVVAEQN---RQLKGEIATHPMYEQLLAAHVACLRVA 53

Query: 61  TPIDQLPLIDAQLAQSHHVLRSYGSLQQANNNNNHSLSPHERQELDNFLAQYLIVLCTFK 120
           TPIDQLP+I+AQL+QSHH+LRSY S     +        H+R ELDNFLAQY++VLC+FK
Sbjct: 54  TPIDQLPIIEAQLSQSHHLLRSYASTAVGYH--------HDRHELDNFLAQYVMVLCSFK 105

Query: 121 EQLQQHVRVHAVEAVMGCREIENTLQALTGVSLGEGTGATMSDDEDDLHMDFSLDQSASD 180
           EQLQQHVRVHAVEAVM CREIEN L +LTG +LGEG+GATMS+DEDDL MDFS D S  D
Sbjct: 106 EQLQQHVRVHAVEAVMACREIENNLHSLTGATLGEGSGATMSEDEDDLPMDFSSDNSGVD 165

Query: 181 ---SHDLMGFGPLLPTETERSLMERVRQELKIELKQVMTTYI 219
               HD+ GFGPLLPTE+ERSLMERVRQELK+ELKQ   + I
Sbjct: 166 FSGGHDMTGFGPLLPTESERSLMERVRQELKLELKQGFKSRI 207

May be involved in secondary cell wall biosynthesis.
Arabidopsis thaliana (taxid: 3702)

>sp|P46606|HD1_BRANA Homeobox protein HD1 OS=Brassica napus GN=HD1 PE=2 SV=1

 Score =  273 bits (697), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 132/187 (70%), Positives = 153/187 (81%), Gaps = 10/187 (5%)

Query: 36  IKAEIASHPLYEQLLAAHVSCLRVATPIDQLPLIDAQLAQSHHVLRSYGSLQQANNNNNH 95
           +K EIA+HP+Y+QLLAAHV+CLRVATPIDQLP+I+AQL+ SHH+LRSY S          
Sbjct: 31  MKGEIATHPMYDQLLAAHVACLRVATPIDQLPIIEAQLSHSHHLLRSYASTAVG------ 84

Query: 96  SLSPHERQELDNFLAQYLIVLCTFKEQLQQHVRVHAVEAVMGCREIENTLQALTGVSLGE 155
             S H+RQELDNFLAQY++VLC+FKEQLQQHVRVHAVEAVM CREIEN L +LTG +LGE
Sbjct: 85  -FSHHDRQELDNFLAQYVMVLCSFKEQLQQHVRVHAVEAVMACREIENNLHSLTGATLGE 143

Query: 156 GTGATMSDDEDDLHMDFSLDQSASD---SHDLMGFGPLLPTETERSLMERVRQELKIELK 212
           G+GATMS+DEDDL MDFS D S  D    HD+ GFGPLLPTE+ERSLMERVRQELK+ELK
Sbjct: 144 GSGATMSEDEDDLQMDFSSDNSGVDFSGGHDMTGFGPLLPTESERSLMERVRQELKLELK 203

Query: 213 QVMTTYI 219
           Q   + I
Sbjct: 204 QGFKSRI 210

Possible developmental regulator.

Brassica napus (taxid: 3708)

>sp|Q94LW3|KNOS3_ORYSJ Homeobox protein knotted-1-like 3 OS=Oryza sativa subsp. japonica GN=HOS66 PE=2 SV=1

 Score =  248 bits (632), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 126/188 (67%), Positives = 151/188 (80%), Gaps = 9/188 (4%)

Query: 34  QLIKAEIASHPLYEQLLAAHVSCLRVATPIDQLPLIDAQLAQSHHVLRSYGSLQQANNNN 93
           QL+K EIA HPL EQL+AAHV CLRVATPID LPLIDAQLAQS  +L SY +      ++
Sbjct: 51  QLLKGEIAVHPLCEQLVAAHVGCLRVATPIDHLPLIDAQLAQSSGLLHSYAA------HH 104

Query: 94  NHSLSPHERQELDNFLAQYLIVLCTFKEQLQQHVRVHAVEAVMGCREIENTLQALTGVSL 153
              LSPH++QELD+FLAQY+++LC+F+EQLQQHVRVHAVEAVM CREIE +LQ LTG +L
Sbjct: 105 RPFLSPHDKQELDSFLAQYMMLLCSFREQLQQHVRVHAVEAVMACREIEQSLQDLTGATL 164

Query: 154 GEGTGATMSDDEDDLH--MDFSLDQSASDSHDLMGFGPLLPTETERSLMERVRQELKIEL 211
            EGTGATMS+DED+    ++  +D   SD HDLMGFGPL+PT++ERSLMERVRQELKIEL
Sbjct: 165 EEGTGATMSEDEDETAPMLEGPMDM-GSDGHDLMGFGPLMPTDSERSLMERVRQELKIEL 223

Query: 212 KQVMTTYI 219
           KQ   + I
Sbjct: 224 KQGFKSRI 231

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P48000|KNAT3_ARATH Homeobox protein knotted-1-like 3 OS=Arabidopsis thaliana GN=KNAT3 PE=1 SV=1

 Score =  226 bits (575), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 123/216 (56%), Positives = 148/216 (68%), Gaps = 23/216 (10%)

Query: 8   VMGSSSSGGGGGGGDVSGHHDQTATVQLI----KAEIASHPLYEQLLAAHVSCLRVATPI 63
           + G   +GGG    D  G       V       KAEI SHPLYEQLL+AHV+CLR+ATP+
Sbjct: 127 IQGEMKTGGGENKNDGGGATAADGVVSWQNARHKAEILSHPLYEQLLSAHVACLRIATPV 186

Query: 64  DQLPLIDAQLAQSHHVLRSYGSLQQANNNNNHSLSPHERQELDNFLAQYLIVLCTFKEQL 123
           DQLP IDAQLAQS HV+  Y +L  A       L   ++ ELD F+  Y+++LC+FKEQL
Sbjct: 187 DQLPRIDAQLAQSQHVVAKYSALGAAA----QGLVGDDK-ELDQFMTHYVLLLCSFKEQL 241

Query: 124 QQHVRVHAVEAVMGCREIENTLQALTGVSLGEGTGATMSDDEDDLHMDFSLDQSASDSH- 182
           QQHVRVHA+EAVM C EIE +LQ+LTGVS GEG GATMSDDED        +Q  SD++ 
Sbjct: 242 QQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGMGATMSDDED--------EQVESDANM 293

Query: 183 -----DLMGFGPLLPTETERSLMERVRQELKIELKQ 213
                D++GFGPL+PTE+ERSLMERVRQELK ELKQ
Sbjct: 294 FDGGLDVLGFGPLIPTESERSLMERVRQELKHELKQ 329

Arabidopsis thaliana (taxid: 3702)

>sp|P48001|KNAT4_ARATH Homeobox protein knotted-1-like 4 OS=Arabidopsis thaliana GN=KNAT4 PE=2 SV=3

 Score =  225 bits (574), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 115/183 (62%), Positives = 140/183 (76%), Gaps = 19/183 (10%)

Query: 37  KAEIASHPLYEQLLAAHVSCLRVATPIDQLPLIDAQLAQSHHVLRSYGSLQQANNNNNHS 96
           KAEI SHPLYEQLL+AHV+CLR+ATP+DQLP IDAQLAQS +V+  Y +L+ A       
Sbjct: 124 KAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSTLEAA-----QG 178

Query: 97  LSPHERQELDNFLAQYLIVLCTFKEQLQQHVRVHAVEAVMGCREIENTLQALTGVSLGEG 156
           L   + +ELD+F+  Y+++LC+FKEQLQQHVRVHA+EAVM C EIE +LQ+ TGVS GEG
Sbjct: 179 LLAGDDKELDHFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSFTGVSPGEG 238

Query: 157 TGATMSDDEDDLHMDFSLDQSASDSH------DLMGFGPLLPTETERSLMERVRQELKIE 210
           TGATMS+DED        +Q  SD+H      D +GFGPL+PTE+ERSLMERVRQELK E
Sbjct: 239 TGATMSEDED--------EQVESDAHLFDGSLDGLGFGPLVPTESERSLMERVRQELKHE 290

Query: 211 LKQ 213
           LKQ
Sbjct: 291 LKQ 293

Arabidopsis thaliana (taxid: 3702)

>sp|O04136|KNAP3_MALDO Homeobox protein knotted-1-like 3 OS=Malus domestica PE=2 SV=1

 Score =  209 bits (531), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 112/178 (62%), Positives = 135/178 (75%), Gaps = 9/178 (5%)

Query: 37  KAEIASHPLYEQLLAAHVSCLRVATPIDQLPLIDAQLAQSHHVLRSYGSLQQANNNNNHS 96
           KAEI +HPLYE LL+AHV+CLR+ATP+DQLP IDAQLAQS +V+  Y +L      ++  
Sbjct: 168 KAEILAHPLYEPLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSALGNGMVGDD-- 225

Query: 97  LSPHERQELDNFLAQYLIVLCTFKEQLQQHVRVHAVEAVMGCREIENTLQALTGVSLGEG 156
                 +ELD F+  Y+++LC+FKEQLQQHVRVHA+EAVM C EIE +LQ+LTGVS GEG
Sbjct: 226 ------KELDQFMRNYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEG 279

Query: 157 TGATMSDDEDDLHMDFS-LDQSASDSHDLMGFGPLLPTETERSLMERVRQELKIELKQ 213
           T ATMSDDEDD     + L     + HD MGFGPL+PTE+ERSLMERVRQELK ELKQ
Sbjct: 280 TSATMSDDEDDQVDSDANLFDEGMEGHDSMGFGPLIPTESERSLMERVRQELKHELKQ 337

Malus domestica (taxid: 3750)

>sp|Q0J6N4|KNOSD_ORYSJ Homeobox protein knotted-1-like 13 OS=Oryza sativa subsp. japonica GN=OSH45 PE=2 SV=2

 Score =  207 bits (528), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 110/178 (61%), Positives = 133/178 (74%), Gaps = 10/178 (5%)

Query: 37  KAEIASHPLYEQLLAAHVSCLRVATPIDQLPLIDAQLAQSHHVLRSYGSLQQANNNNNHS 96
           KAEI +HPLYEQLL+AHV+CLR+ATP+DQLP IDAQLAQS  V+  Y +L  A   ++  
Sbjct: 109 KAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQGVVAKYSALAAAAAGDDG- 167

Query: 97  LSPHERQELDNFLAQYLIVLCTFKEQLQQHVRVHAVEAVMGCREIENTLQALTGVSLGEG 156
                 +ELD F+  Y+++LC+FKEQLQQHVRVHA+EAVM C E+E  LQ+LTG S GEG
Sbjct: 168 ------RELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWELEQNLQSLTGASPGEG 221

Query: 157 TGATMSDDEDD-LHMDFSLDQSASDSHDLMGFGPLLPTETERSLMERVRQELKIELKQ 213
           TGATMSD EDD    + ++   + D  D MGFG  LPTE+ERSLMERVRQELK ELKQ
Sbjct: 222 TGATMSDGEDDQADSEANMYDPSLDGADNMGFG--LPTESERSLMERVRQELKHELKQ 277

Isoform 3 acts as trancription activator, but isoforms 1 and 2 do not.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P48002|KNAT5_ARATH Homeobox protein knotted-1-like 5 OS=Arabidopsis thaliana GN=KNAT5 PE=1 SV=2

 Score =  202 bits (515), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 108/196 (55%), Positives = 135/196 (68%), Gaps = 16/196 (8%)

Query: 21  GDVSGHHDQTATVQLIKAEIASHPLYEQLLAAHVSCLRVATPIDQLPLIDAQLAQSHHVL 80
           G V G   ++A+    KA I  HP+YEQLLAAHV+CLRVATP+DQ+P IDAQL+Q H V 
Sbjct: 106 GVVGGEDWRSAS---YKAAILRHPMYEQLLAAHVACLRVATPVDQIPRIDAQLSQLHTVA 162

Query: 81  RSYGSLQQANNNNNHSLSPHERQELDNFLAQYLIVLCTFKEQLQQHVRVHAVEAVMGCRE 140
             Y +L    +N          +ELD+F++ Y+++LC+FKEQLQ HV VHA+EA+  C E
Sbjct: 163 AKYSTLGVVVDN----------KELDHFMSHYVVLLCSFKEQLQHHVCVHAMEAITACWE 212

Query: 141 IENTLQALTGVSLGEGTGATMSDDEDDLHMDFS---LDQSASDSHDLMGFGPLLPTETER 197
           IE +LQ+LTGVS  E  G TMSDDEDD  ++      D S   S  LMGFGPL+PTE ER
Sbjct: 213 IEQSLQSLTGVSPSESNGKTMSDDEDDNQVESEVNMFDGSLDGSDCLMGFGPLVPTERER 272

Query: 198 SLMERVRQELKIELKQ 213
           SLMERV++ELK ELKQ
Sbjct: 273 SLMERVKKELKHELKQ 288

Arabidopsis thaliana (taxid: 3702)

>sp|O22300|LET12_SOLLC Homeobox protein knotted-1-like LET12 OS=Solanum lycopersicum GN=LET12 PE=2 SV=1

 Score =  202 bits (514), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 111/179 (62%), Positives = 136/179 (75%), Gaps = 10/179 (5%)

Query: 37  KAEIASHPLYEQLLAAHVSCLRVATPIDQLPLIDAQLAQSHHVLRSYGSLQQANNNNNHS 96
           KA+I +HPLY+QLL+AHVSCLR+ATP+DQLP IDAQLAQS +V+  Y  L Q        
Sbjct: 164 KADILNHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLAQSQNVVAKYSVLGQGQ------ 217

Query: 97  LSPHERQELDNFLAQYLIVLCTFKEQLQQHVRVHAVEAVMGCREIENTLQALTGVSLGEG 156
             P + ++LD F+  Y+++L +FKEQLQQHVRVHA+EAVM C E+E +LQ+LTGV+ GEG
Sbjct: 218 -PPLDDKDLDQFMTHYVLLLSSFKEQLQQHVRVHAMEAVMACWELEQSLQSLTGVAPGEG 276

Query: 157 TGATMSDDEDDLHMDFS--LDQSASDSHDLMGFGPLLPTETERSLMERVRQELKIELKQ 213
           TGATMSDD+DD     +  LD    D  D MGFGPL+PTE+ERSLMERVRQELK ELKQ
Sbjct: 277 TGATMSDDDDDQADSDTNFLD-GGFDGPDSMGFGPLVPTESERSLMERVRQELKHELKQ 334

May have a role to play in formative events in ovule and embryo morphogenesis.

Solanum lycopersicum (taxid: 4081)

>sp|Q0E3C3|KNOS2_ORYSJ Homeobox protein knotted-1-like 2 OS=Oryza sativa subsp. japonica GN=HOS58 PE=2 SV=2

 Score =  192 bits (489), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 104/178 (58%), Positives = 129/178 (72%), Gaps = 9/178 (5%)

Query: 37  KAEIASHPLYEQLLAAHVSCLRVATPIDQLPLIDAQLAQSHHVLRSYGSLQQANNNNNHS 96
           KA +A+HPLYE+LL AHV+CLRVATP+DQLP IDAQ+A     L +  +   A   +   
Sbjct: 43  KAAVAAHPLYERLLEAHVACLRVATPVDQLPRIDAQIAARPPPLAAASAAAAAGGPSGG- 101

Query: 97  LSPHERQELDNFLAQYLIVLCTFKEQLQQHVRVHAVEAVMGCREIENTLQALTGVSLGEG 156
                 +ELD F+  Y+++LC+FKEQLQQHVRVHA+EAVMGC E+E +LQ+LTG S GEG
Sbjct: 102 ------EELDLFMTHYVLLLCSFKEQLQQHVRVHAMEAVMGCWELEQSLQSLTGASPGEG 155

Query: 157 TGATMSDDEDDLHMDFSLDQ-SASDSHDLMGFGPLLPTETERSLMERVRQELKIELKQ 213
           TGATMSDDED+  +D   +    +D  D MGFGPL+ TE ERSL+ERVR ELK ELKQ
Sbjct: 156 TGATMSDDEDN-QVDSEANMFDGNDGSDGMGFGPLMLTEGERSLVERVRHELKNELKQ 212

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	232
449452384	301	PREDICTED: homeobox protein knotted-1-li	0.935	0.720	0.771	2e-90
356495645	377	PREDICTED: homeobox protein knotted-1-li	0.844	0.519	0.759	4e-87
224058619	293	predicted protein [Populus trichocarpa]	0.780	0.617	0.831	7e-86
118481200	301	unknown [Populus trichocarpa]	0.780	0.601	0.831	8e-86
255537235	302	homeobox protein knotted-1, putative [Ri	0.806	0.619	0.797	2e-84
255637935	279	unknown [Glycine max]	0.836	0.695	0.745	6e-83
356539927	279	PREDICTED: homeobox protein knotted-1-li	0.836	0.695	0.745	7e-83
302398831	288	HD domain class transcription factor [Ma	0.775	0.625	0.793	2e-80
356514089	293	PREDICTED: homeobox protein knotted-1-li	0.883	0.699	0.726	1e-79
363806766	292	uncharacterized protein LOC100782179 [Gl	0.784	0.623	0.757	1e-77

>gi|449452384|ref|XP_004143939.1| PREDICTED: homeobox protein knotted-1-like 7-like [Cucumis sativus] gi|449495874|ref|XP_004159970.1| PREDICTED: homeobox protein knotted-1-like 7-like [Cucumis sativus]

 Score =  337 bits (864), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 169/219 (77%), Positives = 190/219 (86%), Gaps = 2/219 (0%)

Query: 1   MQEPSLGVMGSSSSGGGGGGGDVSGHHDQTATVQLIKAEIASHPLYEQLLAAHVSCLRVA 60
           MQEP LG+M ++    GG  GDVS   +     QL KAEIA+HPLYEQLL+AHV+CLRVA
Sbjct: 1   MQEPGLGMMTAAGGSSGGLSGDVSVSGEGVHNSQL-KAEIATHPLYEQLLSAHVACLRVA 59

Query: 61  TPIDQLPLIDAQLAQSHHVLRSYGSLQQANNNNNHSLSPHERQELDNFLAQYLIVLCTFK 120
           TPIDQLP+IDAQL+QSHH+LRSY S QQ ++ N HSL+PHERQELDNFLAQY+IVLC+FK
Sbjct: 60  TPIDQLPMIDAQLSQSHHILRSYASSQQ-HHQNAHSLTPHERQELDNFLAQYMIVLCSFK 118

Query: 121 EQLQQHVRVHAVEAVMGCREIENTLQALTGVSLGEGTGATMSDDEDDLHMDFSLDQSASD 180
           EQLQQHVRVHAVEAVM CREIENTLQALTGVSLGEGTGATMSDDEDD+ MDFSLDQS +D
Sbjct: 119 EQLQQHVRVHAVEAVMACREIENTLQALTGVSLGEGTGATMSDDEDDIPMDFSLDQSGAD 178

Query: 181 SHDLMGFGPLLPTETERSLMERVRQELKIELKQVMTTYI 219
           +HD+MGFGPLLPTE+ERSLMERVRQELKIELKQ   + I
Sbjct: 179 AHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRI 217

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356495645|ref|XP_003516685.1| PREDICTED: homeobox protein knotted-1-like 7-like [Glycine max]

 Score =  326 bits (836), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 167/220 (75%), Positives = 182/220 (82%), Gaps = 24/220 (10%)

Query: 1   MQEPSLGVMGSSSSGGGGGGGDVSG-HHDQTATVQLIKAEIASHPLYEQLLAAHVSCLRV 59
           MQEPSLG+MG           +VSG HH Q      +KAEI +HPLYEQLLAAHV+CLRV
Sbjct: 97  MQEPSLGLMG-----------EVSGDHHRQ------LKAEITTHPLYEQLLAAHVACLRV 139

Query: 60  ATPIDQLPLIDAQLAQSHHVLRSYGSLQQANNNNNHSLSPHERQELDNFLAQYLIVLCTF 119
           ATPIDQLPLIDAQL+QSHH+LRSY S      +N HSLSPH RQELDNFLAQYLIVLCTF
Sbjct: 140 ATPIDQLPLIDAQLSQSHHLLRSYVS------HNTHSLSPHHRQELDNFLAQYLIVLCTF 193

Query: 120 KEQLQQHVRVHAVEAVMGCREIENTLQALTGVSLGEGTGATMSDDEDDLHMDFSLDQSAS 179
           KEQLQQHVRVHAVEAVM CR+IEN LQALTGVSLGEGTGATMSDDEDDL MD SLDQS++
Sbjct: 194 KEQLQQHVRVHAVEAVMACRDIENALQALTGVSLGEGTGATMSDDEDDLQMDISLDQSSA 253

Query: 180 DSHDLMGFGPLLPTETERSLMERVRQELKIELKQVMTTYI 219
           + HD+MGFGPLLPTE+ERSLMERVRQELKIELKQ   + I
Sbjct: 254 EGHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRI 293

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224058619|ref|XP_002299569.1| predicted protein [Populus trichocarpa] gi|222846827|gb|EEE84374.1| predicted protein [Populus trichocarpa]

 Score =  322 bits (825), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 153/184 (83%), Positives = 169/184 (91%), Gaps = 3/184 (1%)

Query: 36  IKAEIASHPLYEQLLAAHVSCLRVATPIDQLPLIDAQLAQSHHVLRSYGSLQQANNNNNH 95
           +KAEIA+HPLYEQLL+AHVSCLRVATPIDQLPLIDAQL+QSHH+LRSY S    +N + H
Sbjct: 29  LKAEIATHPLYEQLLSAHVSCLRVATPIDQLPLIDAQLSQSHHLLRSYAS---QHNQHGH 85

Query: 96  SLSPHERQELDNFLAQYLIVLCTFKEQLQQHVRVHAVEAVMGCREIENTLQALTGVSLGE 155
           SLSPHERQ+LDNFLAQYLI+LCTFK+QLQQHVRVHAVEAVM CREIE TLQALTGV+LGE
Sbjct: 86  SLSPHERQDLDNFLAQYLIILCTFKDQLQQHVRVHAVEAVMACREIETTLQALTGVTLGE 145

Query: 156 GTGATMSDDEDDLHMDFSLDQSASDSHDLMGFGPLLPTETERSLMERVRQELKIELKQVM 215
           GTGATMSDDEDDL MDFSLDQS++D HD+MGFGPLLPTE+ERSLMERVRQELKIELKQ  
Sbjct: 146 GTGATMSDDEDDLQMDFSLDQSSADGHDMMGFGPLLPTESERSLMERVRQELKIELKQGF 205

Query: 216 TTYI 219
            + I
Sbjct: 206 KSRI 209

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118481200|gb|ABK92551.1| unknown [Populus trichocarpa]

 Score =  322 bits (825), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 153/184 (83%), Positives = 169/184 (91%), Gaps = 3/184 (1%)

Query: 36  IKAEIASHPLYEQLLAAHVSCLRVATPIDQLPLIDAQLAQSHHVLRSYGSLQQANNNNNH 95
           +KAEIA+HPLYEQLL+AHVSCLRVATPIDQLPLIDAQL+QSHH+LRSY S    +N + H
Sbjct: 37  LKAEIATHPLYEQLLSAHVSCLRVATPIDQLPLIDAQLSQSHHLLRSYAS---QHNQHGH 93

Query: 96  SLSPHERQELDNFLAQYLIVLCTFKEQLQQHVRVHAVEAVMGCREIENTLQALTGVSLGE 155
           SLSPHERQ+LDNFLAQYLI+LCTFK+QLQQHVRVHAVEAVM CREIE TLQALTGV+LGE
Sbjct: 94  SLSPHERQDLDNFLAQYLIILCTFKDQLQQHVRVHAVEAVMACREIETTLQALTGVTLGE 153

Query: 156 GTGATMSDDEDDLHMDFSLDQSASDSHDLMGFGPLLPTETERSLMERVRQELKIELKQVM 215
           GTGATMSDDEDDL MDFSLDQS++D HD+MGFGPLLPTE+ERSLMERVRQELKIELKQ  
Sbjct: 154 GTGATMSDDEDDLQMDFSLDQSSADGHDMMGFGPLLPTESERSLMERVRQELKIELKQGF 213

Query: 216 TTYI 219
            + I
Sbjct: 214 KSRI 217

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537235|ref|XP_002509684.1| homeobox protein knotted-1, putative [Ricinus communis] gi|223549583|gb|EEF51071.1| homeobox protein knotted-1, putative [Ricinus communis]

 Score =  317 bits (813), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 158/198 (79%), Positives = 173/198 (87%), Gaps = 11/198 (5%)

Query: 22  DVSGHHDQTATVQLIKAEIASHPLYEQLLAAHVSCLRVATPIDQLPLIDAQLAQSHHVLR 81
           +VSG  DQT   + +KAEIA+HPLYEQLL+AHVSCLRVATPIDQLPLIDAQL+QSHH++R
Sbjct: 32  EVSG--DQT---RQLKAEIANHPLYEQLLSAHVSCLRVATPIDQLPLIDAQLSQSHHLIR 86

Query: 82  SYGSLQQANNNNNHSLSPHERQELDNFLAQYLIVLCTFKEQLQQHVRVHAVEAVMGCREI 141
           SY S       + H LSPHERQELDNFLAQYLIVLC+FK+QLQQHVRVHAVEAVM CREI
Sbjct: 87  SYAS------QHPHPLSPHERQELDNFLAQYLIVLCSFKDQLQQHVRVHAVEAVMACREI 140

Query: 142 ENTLQALTGVSLGEGTGATMSDDEDDLHMDFSLDQSASDSHDLMGFGPLLPTETERSLME 201
           ENTL ALTGV+LGEGTGATMSDDEDDL MDFSLDQS +D HDLMGFGPLLPTE+ERSLME
Sbjct: 141 ENTLHALTGVTLGEGTGATMSDDEDDLQMDFSLDQSGADGHDLMGFGPLLPTESERSLME 200

Query: 202 RVRQELKIELKQVMTTYI 219
           RVRQELKIELKQ   + I
Sbjct: 201 RVRQELKIELKQGFKSRI 218

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255637935|gb|ACU19284.1| unknown [Glycine max]

 Score =  312 bits (800), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 164/220 (74%), Positives = 178/220 (80%), Gaps = 26/220 (11%)

Query: 1   MQEPSLGVMGSSSSGGGGGGGDVSG-HHDQTATVQLIKAEIASHPLYEQLLAAHVSCLRV 59
           MQE  LG+MG           +VSG  H Q      +KAEIA+HPLYEQLLAAHV+CLRV
Sbjct: 1   MQEAGLGMMG-----------EVSGDQHRQ------LKAEIATHPLYEQLLAAHVACLRV 43

Query: 60  ATPIDQLPLIDAQLAQSHHVLRSYGSLQQANNNNNHSLSPHERQELDNFLAQYLIVLCTF 119
           ATPIDQLPLIDAQL+QSHH+LRSY S       N  SLSPH RQELDNFLAQYLIVLCTF
Sbjct: 44  ATPIDQLPLIDAQLSQSHHLLRSYVS------RNTLSLSPHHRQELDNFLAQYLIVLCTF 97

Query: 120 KEQLQQHVRVHAVEAVMGCREIENTLQALTGVSLGEGTGATMSDDEDDLHMDFSLDQSAS 179
           KEQLQQHVRVHAVEAVM CR+IENTLQALTGVSLGEGTGATMSDDEDDL MDFSLDQS++
Sbjct: 98  KEQLQQHVRVHAVEAVMACRDIENTLQALTGVSLGEGTGATMSDDEDDLQMDFSLDQSSA 157

Query: 180 DSHDLMGFGPLLPTETERSLMERVRQELKIELKQVMTTYI 219
           + HD+MGFG  LPTE+ERSLMERVRQELKIELKQ   + I
Sbjct: 158 EGHDMMGFG--LPTESERSLMERVRQELKIELKQGFKSKI 195

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539927|ref|XP_003538444.1| PREDICTED: homeobox protein knotted-1-like 7-like [Glycine max]

 Score =  312 bits (799), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 164/220 (74%), Positives = 179/220 (81%), Gaps = 26/220 (11%)

Query: 1   MQEPSLGVMGSSSSGGGGGGGDVSG-HHDQTATVQLIKAEIASHPLYEQLLAAHVSCLRV 59
           MQE  LG+MG           +VSG  H Q      +KAEIA+HPLYEQLLAAHV+CLRV
Sbjct: 1   MQEAGLGMMG-----------EVSGDQHRQ------LKAEIATHPLYEQLLAAHVACLRV 43

Query: 60  ATPIDQLPLIDAQLAQSHHVLRSYGSLQQANNNNNHSLSPHERQELDNFLAQYLIVLCTF 119
           ATPIDQLPLIDAQL+QSHH+LRSY S      +N  SLSPH RQELDNFLAQYLIVLCTF
Sbjct: 44  ATPIDQLPLIDAQLSQSHHLLRSYVS------HNTLSLSPHHRQELDNFLAQYLIVLCTF 97

Query: 120 KEQLQQHVRVHAVEAVMGCREIENTLQALTGVSLGEGTGATMSDDEDDLHMDFSLDQSAS 179
           KEQLQQHVRVHAVEAVM CR+IENTLQALTGVSLGEGTGATMSDDEDDL MDFSLDQS++
Sbjct: 98  KEQLQQHVRVHAVEAVMACRDIENTLQALTGVSLGEGTGATMSDDEDDLQMDFSLDQSSA 157

Query: 180 DSHDLMGFGPLLPTETERSLMERVRQELKIELKQVMTTYI 219
           + HD+MGFG  LPTE+ERSLMERVRQELKIELKQ   + I
Sbjct: 158 EGHDMMGFG--LPTESERSLMERVRQELKIELKQGFKSRI 195

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398831|gb|ADL36710.1| HD domain class transcription factor [Malus x domestica]

 Score =  304 bits (779), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 146/184 (79%), Positives = 164/184 (89%), Gaps = 4/184 (2%)

Query: 36  IKAEIASHPLYEQLLAAHVSCLRVATPIDQLPLIDAQLAQSHHVLRSYGSLQQANNNNNH 95
           +KAEIA+HPLYEQLL+AHVSCLRVATPIDQLPLIDAQL+QSHH+LRSY S  Q    +  
Sbjct: 25  LKAEIATHPLYEQLLSAHVSCLRVATPIDQLPLIDAQLSQSHHLLRSYASQPQ----HAQ 80

Query: 96  SLSPHERQELDNFLAQYLIVLCTFKEQLQQHVRVHAVEAVMGCREIENTLQALTGVSLGE 155
           S+SPHERQELDNFLAQYLIVLC+FKE LQQHVRVHAVEAVM CREIE+ LQALTGVSLGE
Sbjct: 81  SVSPHERQELDNFLAQYLIVLCSFKEHLQQHVRVHAVEAVMACREIESNLQALTGVSLGE 140

Query: 156 GTGATMSDDEDDLHMDFSLDQSASDSHDLMGFGPLLPTETERSLMERVRQELKIELKQVM 215
            +GATMSDDEDD+ MDF++DQS+ + HD+MGFGPLLPTE+ERSLMERVRQELKIELKQ  
Sbjct: 141 VSGATMSDDEDDMPMDFTMDQSSGEGHDMMGFGPLLPTESERSLMERVRQELKIELKQGF 200

Query: 216 TTYI 219
            + I
Sbjct: 201 KSRI 204

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356514089|ref|XP_003525739.1| PREDICTED: homeobox protein knotted-1-like 7-like [Glycine max]

 Score =  301 bits (772), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 159/219 (72%), Positives = 176/219 (80%), Gaps = 14/219 (6%)

Query: 1   MQEPSLGVMGSSSSGGGGGGGDVSGHHDQTATVQLIKAEIASHPLYEQLLAAHVSCLRVA 60
           MQE  LG MG  S G     GD   HH Q      +KAEIA+HPLYEQLL+AHVSCLRVA
Sbjct: 1   MQEAGLG-MGMVS-GEVSAAGDHHHHHRQ------VKAEIATHPLYEQLLSAHVSCLRVA 52

Query: 61  TPIDQLPLIDAQLAQSHHVLRSYGSLQQANNNNNHSLSPHERQELDNFLAQYLIVLCTFK 120
           TPIDQLPLID QL+QSHH+LRSY S    + + +      +RQELDNF+AQYLIVLCTFK
Sbjct: 53  TPIDQLPLIDGQLSQSHHLLRSYASHHSHSLSPH------DRQELDNFMAQYLIVLCTFK 106

Query: 121 EQLQQHVRVHAVEAVMGCREIENTLQALTGVSLGEGTGATMSDDEDDLHMDFSLDQSASD 180
           EQLQQHVRVHAVEAVM CR+IE+TLQALTGVSLGEGTGATMSDDEDDL MD SLDQS+++
Sbjct: 107 EQLQQHVRVHAVEAVMACRDIESTLQALTGVSLGEGTGATMSDDEDDLQMDGSLDQSSAE 166

Query: 181 SHDLMGFGPLLPTETERSLMERVRQELKIELKQVMTTYI 219
            HDLMGFGPLLPTE+ERSLMERVRQELKIELKQ   + I
Sbjct: 167 GHDLMGFGPLLPTESERSLMERVRQELKIELKQGFKSRI 205

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363806766|ref|NP_001242278.1| uncharacterized protein LOC100782179 [Glycine max] gi|255635799|gb|ACU18248.1| unknown [Glycine max]

 Score =  295 bits (754), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 147/194 (75%), Positives = 165/194 (85%), Gaps = 12/194 (6%)

Query: 26  HHDQTATVQLIKAEIASHPLYEQLLAAHVSCLRVATPIDQLPLIDAQLAQSHHVLRSYGS 85
           HH Q      +KAEIA+HPLYEQLL+AHVSCLRVATPIDQLPLID QL+QSHH+LRSY S
Sbjct: 23  HHRQ------VKAEIANHPLYEQLLSAHVSCLRVATPIDQLPLIDGQLSQSHHLLRSYAS 76

Query: 86  LQQANNNNNHSLSPHERQELDNFLAQYLIVLCTFKEQLQQHVRVHAVEAVMGCREIENTL 145
               + + +      +RQELDNF+AQYLIVLCTFKEQLQQHVRVHAVEAVM CR+IE+TL
Sbjct: 77  HHSHSLSPH------DRQELDNFMAQYLIVLCTFKEQLQQHVRVHAVEAVMACRDIESTL 130

Query: 146 QALTGVSLGEGTGATMSDDEDDLHMDFSLDQSASDSHDLMGFGPLLPTETERSLMERVRQ 205
           QALTGVSLGEGTGATMSDDEDDL M+ SLDQS++D HD+MGFGPLLPTE+ERSLMERVRQ
Sbjct: 131 QALTGVSLGEGTGATMSDDEDDLQMNGSLDQSSADGHDMMGFGPLLPTESERSLMERVRQ 190

Query: 206 ELKIELKQVMTTYI 219
           ELKIELKQ   + I
Sbjct: 191 ELKIELKQGFKSRI 204

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	232
TAIR|locus:2015554	291	KNAT7 "KNOTTED-like homeobox o	0.732	0.584	0.723	8.5e-65
TAIR|locus:2146945	431	KNAT3 "KNOTTED1-like homeobox	0.728	0.392	0.646	4.9e-53
TAIR|locus:2184911	393	KNAT4 "KNOTTED1-like homeobox	0.728	0.430	0.634	6.3e-53
TAIR|locus:2116632	383	KNAT5 "KNOTTED1-like homeobox	0.719	0.436	0.577	5.4e-47
TAIR|locus:2026810	310	KNAT2 "KNOTTED-like from Arabi	0.594	0.445	0.288	8.2e-06
TAIR|locus:2128828	398	KNAT1 "KNOTTED-like from Arabi	0.469	0.273	0.298	7.6e-05
UNIPROTKB|P46609	361	OSH1 "Homeobox protein knotted	0.530	0.340	0.313	0.0002

TAIR|locus:2015554 KNAT7 "KNOTTED-like homeobox of Arabidopsis thaliana 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 660 (237.4 bits), Expect = 8.5e-65, P = 8.5e-65
 Identities = 131/181 (72%), Positives = 151/181 (83%)

Query:    36 IKAEIASHPLYEQLLAAHVSCLRVATPIDQLPLIDAQLAQSHHVLRSYGSLQQANNNNNH 95
             +K EIA+HP+YEQLLAAHV+CLRVATPIDQLP+I+AQL+QSHH+LRSY S     +    
Sbjct:    29 LKGEIATHPMYEQLLAAHVACLRVATPIDQLPIIEAQLSQSHHLLRSYASTAVGYH---- 84

Query:    96 SLSPHERQELDNFLAQYLIVLCTFKEQLQQHVRVHAVEAVMGCREIENTLQALTGVSLGE 155
                 H+R ELDNFLAQY++VLC+FKEQLQQHVRVHAVEAVM CREIEN L +LTG +LGE
Sbjct:    85 ----HDRHELDNFLAQYVMVLCSFKEQLQQHVRVHAVEAVMACREIENNLHSLTGATLGE 140

Query:   156 GTGATMSDDEDDLHMDFSLDQSASD---SHDLMGFGPLLPTETERSLMERVRQELKIELK 212
             G+GATMS+DEDDL MDFS D S  D    HD+ GFGPLLPTE+ERSLMERVRQELK+ELK
Sbjct:   141 GSGATMSEDEDDLPMDFSSDNSGVDFSGGHDMTGFGPLLPTESERSLMERVRQELKLELK 200

Query:   213 Q 213
             Q
Sbjct:   201 Q 201

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010089 "xylem development" evidence=RCA;IMP

GO:2000652 "regulation of secondary cell wall biogenesis" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0007155 "cell adhesion" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

GO:0045010 "actin nucleation" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

GO:0048513 "organ development" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2146945 KNAT3 "KNOTTED1-like homeobox gene 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 549 (198.3 bits), Expect = 4.9e-53, P = 4.9e-53
 Identities = 115/178 (64%), Positives = 137/178 (76%)

Query:    37 KAEIASHPLYEQLLAAHVSCLRVATPIDQLPLIDAQLAQSHHVLRSYGSLQQANNNNNHS 96
             KAEI SHPLYEQLL+AHV+CLR+ATP+DQLP IDAQLAQS HV+  Y +L  A       
Sbjct:   160 KAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQHVVAKYSALGAAAQG---- 215

Query:    97 LSPHERQELDNFLAQYLIVLCTFKEQLQQHVRVHAVEAVMGCREIENTLQALTGVSLGEG 156
             L   ++ ELD F+  Y+++LC+FKEQLQQHVRVHA+EAVM C EIE +LQ+LTGVS GEG
Sbjct:   216 LVGDDK-ELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEG 274

Query:   157 TGATMSDDEDDLHMDFSLDQSASDSH-DLMGFGPLLPTETERSLMERVRQELKIELKQ 213
              GATMSDDED+       D +  D   D++GFGPL+PTE+ERSLMERVRQELK ELKQ
Sbjct:   275 MGATMSDDEDE---QVESDANMFDGGLDVLGFGPLIPTESERSLMERVRQELKHELKQ 329

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=IDA

GO:0009722 "detection of cytokinin stimulus" evidence=IEP

GO:0071345 "cellular response to cytokine stimulus" evidence=IDA

GO:0048513 "organ development" evidence=RCA

GO:0009416 "response to light stimulus" evidence=IEP

TAIR|locus:2184911 KNAT4 "KNOTTED1-like homeobox gene 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 548 (198.0 bits), Expect = 6.3e-53, P = 6.3e-53
 Identities = 113/178 (63%), Positives = 139/178 (78%)

Query:    37 KAEIASHPLYEQLLAAHVSCLRVATPIDQLPLIDAQLAQSHHVLRSYGSLQQANNNNNHS 96
             KAEI SHPLYEQLL+AHV+CLR+ATP+DQLP IDAQLAQS +V+  Y +L+ A       
Sbjct:   124 KAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSTLEAAQG----- 178

Query:    97 LSPHERQELDNFLAQYLIVLCTFKEQLQQHVRVHAVEAVMGCREIENTLQALTGVSLGEG 156
             L   + +ELD+F+  Y+++LC+FKEQLQQHVRVHA+EAVM C EIE +LQ+ TGVS GEG
Sbjct:   179 LLAGDDKELDHFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSFTGVSPGEG 238

Query:   157 TGATMSDDEDD-LHMDFSLDQSASDSHDLMGFGPLLPTETERSLMERVRQELKIELKQ 213
             TGATMS+DED+ +  D  L   + D    +GFGPL+PTE+ERSLMERVRQELK ELKQ
Sbjct:   239 TGATMSEDEDEQVESDAHLFDGSLDG---LGFGPLVPTESERSLMERVRQELKHELKQ 293

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA;NAS

GO:0005737 "cytoplasm" evidence=NAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0048513 "organ development" evidence=RCA

GO:0009416 "response to light stimulus" evidence=IEP

TAIR|locus:2116632 KNAT5 "KNOTTED1-like homeobox gene 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
 Identities = 104/180 (57%), Positives = 129/180 (71%)

Query:    37 KAEIASHPLYEQLLAAHVSCLRVATPIDQLPLIDAQLAQSHHVLRSYGSLQQANNNNNHS 96
             KA I  HP+YEQLLAAHV+CLRVATP+DQ+P IDAQL+Q H V   Y +L    +N    
Sbjct:   119 KAAILRHPMYEQLLAAHVACLRVATPVDQIPRIDAQLSQLHTVAAKYSTLGVVVDN---- 174

Query:    97 LSPHERQELDNFLAQYLIVLCTFKEQLQQHVRVHAVEAVMGCREIENTLQALTGVSLGEG 156
                   +ELD+F++ Y+++LC+FKEQLQ HV VHA+EA+  C EIE +LQ+LTGVS  E 
Sbjct:   175 ------KELDHFMSHYVVLLCSFKEQLQHHVCVHAMEAITACWEIEQSLQSLTGVSPSES 228

Query:   157 TGATMSDDEDDLHMDFSL---DQSASDSHDLMGFGPLLPTETERSLMERVRQELKIELKQ 213
              G TMSDDEDD  ++  +   D S   S  LMGFGPL+PTE ERSLMERV++ELK ELKQ
Sbjct:   229 NGKTMSDDEDDNQVESEVNMFDGSLDGSDCLMGFGPLVPTERERSLMERVKKELKHELKQ 288

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009727 "detection of ethylene stimulus" evidence=IEP

GO:0071369 "cellular response to ethylene stimulus" evidence=IDA

GO:0048513 "organ development" evidence=RCA

TAIR|locus:2026810 KNAT2 "KNOTTED-like from Arabidopsis thaliana 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 123 (48.4 bits), Expect = 8.2e-06, P = 8.2e-06
 Identities = 45/156 (28%), Positives = 71/156 (45%)

Query:    32 TVQLIKAEIASHPLYEQLLAAHVSCLRVATPIDQLPLIDAQLAQSHHVLRSYGSLQQANN 91
             ++ +IK++IASHPLY +LL  ++ C +V  P++   +++    ++H   R    L     
Sbjct:    65 SLSVIKSKIASHPLYPRLLQTYIDCQKVGAPMEIACILEEIQRENHVYKRDVAPL----- 119

Query:    92 NNNHSLSPHERQELDNFLAQYLIVLCTFKEQLQQHVRVHAVEAVMGCREIENTLQAL-TG 150
              +     P    ELD F+  Y  +L  +K  L +       EA     +IE  LQ L TG
Sbjct:   120 -SCFGADP----ELDEFMETYCDILVKYKTDLARPFD----EATTFINKIEMQLQNLCTG 170

Query:   151 VSLGEGT---GATMSDDEDDLHMDFSLDQSASDSHD 183
              +        GA  SD+E     D + D S   S+D
Sbjct:   171 PASATALSDDGAVSSDEELREDDDIAADDSQQRSND 206

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010094 "specification of carpel identity" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0009723 "response to ethylene stimulus" evidence=IGI

GO:0009736 "cytokinin mediated signaling pathway" evidence=IMP

GO:0007059 "chromosome segregation" evidence=RCA

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0007129 "synapsis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0009062 "fatty acid catabolic process" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0010051 "xylem and phloem pattern formation" evidence=RCA

GO:0010332 "response to gamma radiation" evidence=RCA

GO:0032204 "regulation of telomere maintenance" evidence=RCA

GO:0032504 "multicellular organism reproduction" evidence=RCA

GO:0042138 "meiotic DNA double-strand break formation" evidence=RCA

GO:0043247 "telomere maintenance in response to DNA damage" evidence=RCA

GO:0045132 "meiotic chromosome segregation" evidence=RCA

GO:0048438 "floral whorl development" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

TAIR|locus:2128828 KNAT1 "KNOTTED-like from Arabidopsis thaliana" [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 7.6e-05, P = 7.6e-05
 Identities = 37/124 (29%), Positives = 66/124 (53%)

Query:    26 HHDQTATVQLIKAEIASHPLYEQLLAAHVSCLRVATPIDQLPLIDAQLAQSHHVLRSYGS 85
             ++D  + V+ +KA+I +HP Y  LL A++ C ++  P D +  I A  A+     + + +
Sbjct:   124 NNDNVSDVEAMKAKIIAHPHYSTLLQAYLDCQKIGAPPDVVDRITA--AR-----QDFEA 176

Query:    86 LQQANNNNNHSLSPHERQ-ELDNFLAQYLIVLCTFKEQLQQHVRVHAVEAVMGCREIENT 144
              QQ    +  S+S   R  ELD F+  Y  +L  ++E+L + ++  A+E +   R IE+ 
Sbjct:   177 RQQ---RSTPSVSASSRDPELDQFMEAYCDMLVKYREELTRPIQ-EAMEFI---RRIESQ 229

Query:   145 LQAL 148
             L  L
Sbjct:   230 LSML 233

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0045165 "cell fate commitment" evidence=IMP

GO:0010051 "xylem and phloem pattern formation" evidence=RCA;IMP

GO:0007389 "pattern specification process" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0048438 "floral whorl development" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048513 "organ development" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

GO:0001708 "cell fate specification" evidence=IMP

UNIPROTKB|P46609 OSH1 "Homeobox protein knotted-1-like 6" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 113 (44.8 bits), Expect = 0.00020, P = 0.00020
 Identities = 43/137 (31%), Positives = 67/137 (48%)

Query:    31 ATVQLIKAEIASHPLYEQLLAAHVSCLRVATPIDQLPLIDAQLAQSHHVLRSYGSLQQAN 90
             A V+ IKA+I SHP Y  LLAA++ C +V  P    P + A+L      L     L+Q  
Sbjct:    99 ADVEAIKAKIISHPHYSSLLAAYLDCQKVGAP----PEVAARLTAVAQDLE----LRQRT 150

Query:    91 NNNNHSLSPHERQELDNFLAQYLIVLCTFKEQLQQHVRVHAVEAVMGCREIENTLQALTG 150
                   L      ELD F+  Y  +L  ++E+L + ++  A+E +       NTL +++G
Sbjct:   151 ALG--VLGAATEPELDQFMEAYHEMLVKYREELTRPLQ-EAMEFLRRVETQLNTL-SISG 206

Query:   151 VSLGE--GTGATMSDDE 165
              SL     +G++  D E
Sbjct:   207 RSLRNILSSGSSEEDQE 223


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.130   0.366    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      232       195   0.00078  111 3  11 22  0.47    32
                                                     31  0.44    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  557 (59 KB)
  Total size of DFA:  147 KB (2090 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  24.91u 0.09s 25.00t   Elapsed:  00:00:01
  Total cpu time:  24.91u 0.09s 25.00t   Elapsed:  00:00:01
  Start:  Sat May 11 07:59:58 2013   End:  Sat May 11 07:59:59 2013

GO:0003677 "DNA binding" evidence=IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IMP

GO:0005634 "nucleus" evidence=IGI

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P46606	HD1_BRANA	No assigned EC number	0.7058	0.7629	0.6020	N/A	no
Q9FPQ8	KNAT7_ARATH	No assigned EC number	0.6486	0.8793	0.7010	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	232
pfam03790	45	pfam03790, KNOX1, KNOX1 domain	2e-18
pfam03791	52	pfam03791, KNOX2, KNOX2 domain	1e-14

>gnl|CDD|112596 pfam03790, KNOX1, KNOX1 domain

 Score = 75.4 bits (186), Expect = 2e-18
 Identities = 17/44 (38%), Positives = 27/44 (61%)

Query: 35 LIKAEIASHPLYEQLLAAHVSCLRVATPIDQLPLIDAQLAQSHH 78
           IKA+IASHPLY +LLAA++ C +V  P +    ++    ++  
Sbjct: 2  AIKAKIASHPLYPRLLAAYIDCQKVGAPPEVAARLEEIRRENQA 45

The MEINOX region is comprised of two domains, KNOX1 and KNOX2. KNOX1 plays a role in suppressing target gene expression. KNOX2, essential for function, is thought to be necessary for homo-dimerisation. Length = 45

>gnl|CDD|112597 pfam03791, KNOX2, KNOX2 domain

 Score = 65.7 bits (161), Expect = 1e-14
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 4/56 (7%)

Query: 95  HSLSPHERQELDNFLAQYLIVLCTFKEQLQQHVRVHAVEAVMGCREIENTLQALTG 150
            S       ELD F+  Y  VL  +KE+L +       EA+    EIE  LQ L G
Sbjct: 1   TSRCIGADPELDQFMEAYCDVLVKYKEELSRPFD----EAMTFLNEIETQLQNLCG 52

The MEINOX region is comprised of two domains, KNOX1 and KNOX2. KNOX1 plays a role in suppressing target gene expression. KNOX2, essential for function, is thought to be necessary for homo-dimerisation. Length = 52

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	232
PF03791	52	KNOX2: KNOX2 domain ; InterPro: IPR005541 The MEIN	99.93
PF03790	45	KNOX1: KNOX1 domain ; InterPro: IPR005540 The MEIN	99.88
KOG0773	342	consensus Transcription factor MEIS1 and related H	99.15
PF03789	22	ELK: ELK domain ; InterPro: IPR005539 This domain	88.55

>PF03791 KNOX2: KNOX2 domain ; InterPro: IPR005541 The MEINOX region is comprised of two domains, KNOX1 and KNOX2

Probab=99.93  E-value=1.6e-26  Score=164.14  Aligned_cols=50  Identities=44%  Similarity=0.602  Sum_probs=47.5

Q ss_pred             CCCCCCCchhHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHhhC
Q 026847           97 LSPHERQELDNFLAQYLIVLCTFKEQLQQHVRVHAVEAVMGCREIENTLQALTG  150 (232)
Q Consensus        97 ~~~g~DPELDqFMeaYc~mL~kyKEEL~kPv~v~f~EA~~F~~~IEsQL~sLtg  150 (232)
                      .+++.||||||||++||.||+||||||+||    |+||++|||+||+||++|||
T Consensus         3 ~~~~~dpELDqFMeaYc~~L~kykeeL~~p----~~EA~~f~~~ie~qL~~Lt~   52 (52)
T PF03791_consen    3 SSIGADPELDQFMEAYCDMLVKYKEELQRP----FQEAMEFCREIEQQLSSLTG   52 (52)
T ss_pred             CCCCCCccHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhC
Confidence            356899999999999999999999999999    69999999999999999996

KNOX1 plays a role in suppressing target gene expression. KNOX2, essential for function, is thought to be necessary for homo-dimerization [].; GO: 0003677 DNA binding, 0005634 nucleus

>PF03790 KNOX1: KNOX1 domain ; InterPro: IPR005540 The MEINOX region is comprised of two domains, KNOX1 and KNOX2

Probab=99.88  E-value=8.1e-24  Score=146.52  Aligned_cols=43  Identities=49%  Similarity=0.772  Sum_probs=40.1

Q ss_pred             HHHHHHHhhCCChHHHHHHHHcchhccCCCCchhhHHHHHHhh
Q 026847           34 QLIKAEIASHPLYEQLLAAHVSCLRVATPIDQLPLIDAQLAQS   76 (232)
Q Consensus        34 ~~iKAkI~sHPlYp~LL~AyvdC~KVGAPpev~~rLde~~a~~   76 (232)
                      +.|||+|++||+||+||+|||+|||||||||++++||++++++
T Consensus         1 e~iKA~I~~HP~Y~~Ll~Ayi~C~KVGAP~e~~~~L~e~~~~~   43 (45)
T PF03790_consen    1 EAIKAKIASHPLYPRLLAAYIDCQKVGAPPEVVARLDEILAES   43 (45)
T ss_pred             ChHHHHHHcCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence            3699999999999999999999999999999999999987654

KNOX1 plays a role in suppressing target gene expression. KNOX2, essential for function, is thought to be necessary for homo-dimerization [].; GO: 0003677 DNA binding, 0005634 nucleus

>KOG0773 consensus Transcription factor MEIS1 and related HOX domain proteins [Transcription]

Probab=99.15  E-value=5.9e-12  Score=114.26  Aligned_cols=176  Identities=16%  Similarity=0.118  Sum_probs=130.2

Q ss_pred             HHHHHHHHhhCCChHHHHHHHHcchhccCCCCchhhHHHHHHhhhhhhhhhcccccccCCCCCCCCCCCCCchhHHHHHH
Q 026847           33 VQLIKAEIASHPLYEQLLAAHVSCLRVATPIDQLPLIDAQLAQSHHVLRSYGSLQQANNNNNHSLSPHERQELDNFLAQY  112 (232)
Q Consensus        33 ~~~iKAkI~sHPlYp~LL~AyvdC~KVGAPpev~~rLde~~a~~~~~~~k~ss~~~~~~~~~~~~~~g~DPELDqFMeaY  112 (232)
                      ....|+.+.+||+|..++.||++|++++.|.+.+.++++..+.......++..++..  + ........+++|+.||..|
T Consensus        49 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~--s-~~~~~~~~~~~~~~~~~k~  125 (342)
T KOG0773|consen   49 LASSKYLTAAQELLDEFCSAGLDCLKGKMPYDPVPRSPASLSPPEDKGARRGNATRE--S-ATLKAWLEEHRLNPYPSKL  125 (342)
T ss_pred             cccccccccchhHHhHHhhccccccccccCcCccccccccccCcccccccccccccc--c-cccccchhhhhhccCchHH
Confidence            455899999999999999999999999999999999877554433332222211110  0 1122467899999999999


Q ss_pred             HHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCCchhhhccccCCCCCCC-CccccCCCCCCc
Q 026847          113 LIVLCTFKEQLQQHVRVHAVEAVMGCREIENTLQALTGVSLGEGTGATMSDDEDDLHMDFSLDQSAS-DSHDLMGFGPLL  191 (232)
Q Consensus       113 c~mL~kyKEEL~kPv~v~f~EA~~F~~~IEsQL~sLtg~S~gEg~gat~SddE~d~d~~~~~~d~~~-d~~d~~gfgpl~  191 (232)
                      +.+|..++..|+.++.+  ++++.++++++..+...++.++....+.+...++++.+.   .+..+. -..+.+|++|..
T Consensus       126 ~~~ll~~~~~~~~~~~~--~~~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~q~~~~~~~~~~~~~~  200 (342)
T KOG0773|consen  126 EKILLAVITKLTLTQVS--TWFANARRRLKKELKMTWGPTPLALDGISRHFSDLEKEK---AIGGQLSSSEELLGESEQD  200 (342)
T ss_pred             HHHHHHHHHHhhhhhHH--HHHHHHHHHHHhccCCCCCCccccccchhhhhhhhhhcc---ccccccccccccccccccc
Confidence            99999999999999633  899999999999999999887766555543333332211   111222 236688899988


Q ss_pred             cChhhhhHH--HHHHHHHHHHHhhccc
Q 026847          192 PTETERSLM--ERVRQELKIELKQVMT  216 (232)
Q Consensus       192 ~te~erslm--ervrqelk~elkqg~~  216 (232)
                      ..+.+++-+  ++++..++..+++.++
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (342)
T KOG0773|consen  201 DSEDESGPSGSEPPLRLAKQSLRQQRS  227 (342)
T ss_pred             ccccccCcccccCCccccccccccccc
Confidence            888888877  8888888888888775

>PF03789 ELK: ELK domain ; InterPro: IPR005539 This domain is required for the nuclear localisation of these proteins []

Probab=88.55  E-value=0.12  Score=31.43  Aligned_cols=15  Identities=40%  Similarity=0.492  Sum_probs=13.2

Q ss_pred             HHHHHHhhcccceeE
Q 026847          206 ELKIELKQVMTTYIY  220 (232)
Q Consensus       206 elk~elkqg~~~~~~  220 (232)
                      |||++|+++|...|.
T Consensus         1 ELK~~LlrkY~g~i~   15 (22)
T PF03789_consen    1 ELKHQLLRKYSGYIS   15 (22)
T ss_pred             CHHHHHHHHHhHhHH
Confidence            799999999998763

All of these proteins are members of the Tale/Knox homeodomain family, a subfamily, containing homeobox IPR001356 from INTERPRO.; GO: 0003677 DNA binding, 0005634 nucleus

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00