Citrus Sinensis ID: 026848


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230--
MAFCISNSAIWKSPNSLFGWNTGKKNSDEKPQAQPKIKYHEVDLPFSLSLVDNTFLRGRELKCCYKATIDGFSATNFHSCCDFKGPCVIIGHTNKSLKFGAFNPEGYRSTDDYYDTFDAFLFYWTDNNGKIDDPITLPKIGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSGIGDLRQAKSRLGLSYAKREDGKESLFGDDSRATLEEVLVFCSPQIASLY
cccccccccEEEcccccccccccccccccccccccccccccccccHHHcccccccccccEEEEEEEEEcccccHHHHHHHccccccEEEEEEcccccEEEEcccccccccccccccccEEEEEEEccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEcccccccc
ccEEcccccEEcccccccccccccccccccccccccccEccccccccHHHHHHcccccccEEEEEEEccccccHHHHHHHHcccccEEEEEEEcccEEEEcEccccccccccccccccEEEEEEccccccccccEEcccccccccEEEEccccccccccccEEEccccccccccccccccccccccHHHHHHccccccccccccccccccccccEEEEEEEEEEcHHHHccc
mafcisnsaiwkspnslfgwntgkknsdekpqaqpkikyhevdlpfslslvdntFLRGRELKCCYKATIdgfsatnfhsccdfkgpcviightnkslkfgafnpegyrstddyyDTFDAFLFYwtdnngkiddpitlpkiggsgaalfdyarggpqfgadglligpplapvmggfagpdtnsgigdLRQAKSrlglsyakredgkeslfgddsrATLEEVLVFCspqiasly
mafcisnsaiwkspnslfGWNTGKKNSDEKPQAQPKIKYHEVDLPFSLSLVDNTFLRGRELKCCYKATIDGFSATNFHSCCDFKGPCVIIGHTNKSLKFGAFNPEGYRSTDDYYDTFDAFLFYWTDNNGKIDDPITLPKIGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSGIGDLRQAKSRLGLsyakredgkeslfgddsratlEEVLVFCSPQIASLY
MAFCISNSAIWKSPNSLFGWNTGKKNSDEKPQAQPKIKYHEVDLPFSLSLVDNTFLRGRELKCCYKATIDGFSATNFHSCCDFKGPCVIIGHTNKSLKFGAFNPEGYRSTDDYYDTFDAFLFYWTDNNGKIDDPITLPKIGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSGIGDLRQAKSRLGLSYAKREDGKESLFGDDSRATLEEVLVFCSPQIASLY
**FCISNSAIWKSPNSLFGW****************IKYHEVDLPFSLSLVDNTFLRGRELKCCYKATIDGFSATNFHSCCDFKGPCVIIGHTNKSLKFGAFNPEGYRSTDDYYDTFDAFLFYWTDNNGKIDDPITLPKIGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFA***************************************TLEEVLVFCS*******
**************NSL************************VDLPFSLSLVDNTFLRGRELKCCYKATIDGFSATNFHSCCDFKGPCVIIGHTNKSLKFGAFNPEGYRSTDDYYDTFDAFLFYWTDNNGKIDDPITLPKIGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSGIGDLRQAKSRLGLSYAKREDGKESLFGDDSRATLEEVLVFCSPQIASLY
MAFCISNSAIWKSPNSLFGWNTGK**********PKIKYHEVDLPFSLSLVDNTFLRGRELKCCYKATIDGFSATNFHSCCDFKGPCVIIGHTNKSLKFGAFNPEGYRSTDDYYDTFDAFLFYWTDNNGKIDDPITLPKIGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSGIGDLRQAKSRLGLSYAKREDGKESLFGDDSRATLEEVLVFCSPQIASLY
*AFCISNSAIWKSPNSLFGWNTGKKNSDEKPQAQPKIKYHEVDLPFSLSLVDNTFLRGRELKCCYKATIDGFSATNFHSCCDFKGPCVIIGHTNKSLKFGAFNPEGYRSTDDYYDTFDAFLFYWTDNNGKIDDPITLPKIGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSGIGDLRQAKSRLGLSYAKREDGKESLFGDDSRATLEEVLVFCSPQIASLY
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAFCISNSAIWKSPNSLFGWNTGKKNSDEKPQAQPKIKYHEVDLPFSLSLVDNTFLRGRELKCCYKATIDGFSATNFHSCCDFKGPCVIIGHTNKSLKFGAFNPEGYRSTDDYYDTFDAFLFYWTDNNGKIDDPITLPKIGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSGIGDLRQAKSRLGLSYAKREDGKESLFGDDSRATLEEVLVFCSPQIASLY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query232
297742118 737 unnamed protein product [Vitis vinifera] 0.974 0.306 0.842 1e-111
225427246229 PREDICTED: uncharacterized protein LOC10 0.974 0.986 0.842 1e-107
224126307229 predicted protein [Populus trichocarpa] 0.961 0.973 0.854 1e-107
356563455230 PREDICTED: uncharacterized protein LOC10 0.974 0.982 0.813 1e-103
255557621233 conserved hypothetical protein [Ricinus 0.982 0.978 0.789 1e-103
147765513231 hypothetical protein VITISV_004431 [Viti 0.935 0.939 0.840 1e-102
357476693229 hypothetical protein MTR_4g098620 [Medic 0.969 0.982 0.779 1e-102
449462003233 PREDICTED: uncharacterized protein LOC10 0.978 0.974 0.747 1e-96
79356329239 uncharacterized protein [Arabidopsis tha 0.918 0.891 0.768 1e-91
326506144266 predicted protein [Hordeum vulgare subsp 0.974 0.849 0.659 3e-86
>gi|297742118|emb|CBI33905.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  406 bits (1043), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 198/235 (84%), Positives = 211/235 (89%), Gaps = 9/235 (3%)

Query: 1   MAFCISNSAI--WK-SPNSLFGWNTGKKNSDEKPQAQPKIKYHEVDLPFSLSLVDNTFLR 57
           MA C+SNSA+  WK SP SLFGWNTG+KN+D+ PQ     KY+++DLPFS SLV  TFLR
Sbjct: 509 MACCVSNSALQWWKTSPRSLFGWNTGRKNTDDSPQP----KYYDIDLPFSPSLVAKTFLR 564

Query: 58  GRELKCCYKATIDGFSATNFHSCCDFKGPCVIIGHTNKSLKFGAFNPEGYRSTDDYYDTF 117
           G+ELKCCYKA+IDGFSATNFH CCDFKGPCVIIG+TNKS KFGAFNPEGYRSTDDYYDTF
Sbjct: 565 GKELKCCYKASIDGFSATNFHGCCDFKGPCVIIGYTNKSFKFGAFNPEGYRSTDDYYDTF 624

Query: 118 DAFLFYWTDNNGKIDDPITLPKIGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAG 177
           DAFLFYWTDN     DPI LPK+GGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAG
Sbjct: 625 DAFLFYWTDNEK--SDPIILPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAG 682

Query: 178 PDTNSGIGDLRQAKSRLGLSYAKREDGKESLFGDDSRATLEEVLVFCSPQIASLY 232
           PDTNSGIGDLRQAKSRLGLSYAKR DGKESLFGD+SRATLEEV VFCSPQIASLY
Sbjct: 683 PDTNSGIGDLRQAKSRLGLSYAKRVDGKESLFGDESRATLEEVQVFCSPQIASLY 737




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427246|ref|XP_002278575.1| PREDICTED: uncharacterized protein LOC100250549 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224126307|ref|XP_002329522.1| predicted protein [Populus trichocarpa] gi|222870231|gb|EEF07362.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356563455|ref|XP_003549978.1| PREDICTED: uncharacterized protein LOC100527047 [Glycine max] Back     alignment and taxonomy information
>gi|255557621|ref|XP_002519840.1| conserved hypothetical protein [Ricinus communis] gi|223540886|gb|EEF42444.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|147765513|emb|CAN78112.1| hypothetical protein VITISV_004431 [Vitis vinifera] Back     alignment and taxonomy information
>gi|357476693|ref|XP_003608632.1| hypothetical protein MTR_4g098620 [Medicago truncatula] gi|355509687|gb|AES90829.1| hypothetical protein MTR_4g098620 [Medicago truncatula] Back     alignment and taxonomy information
>gi|449462003|ref|XP_004148731.1| PREDICTED: uncharacterized protein LOC101203266 [Cucumis sativus] gi|449521146|ref|XP_004167591.1| PREDICTED: uncharacterized LOC101203266 [Cucumis sativus] Back     alignment and taxonomy information
>gi|79356329|ref|NP_174530.2| uncharacterized protein [Arabidopsis thaliana] gi|51968764|dbj|BAD43074.1| unknown protein [Arabidopsis thaliana] gi|332193375|gb|AEE31496.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|326506144|dbj|BAJ91311.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326511689|dbj|BAJ91989.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query232
TAIR|locus:2033755239 AT1G32520 "AT1G32520" [Arabido 0.926 0.899 0.766 1.7e-91
ZFIN|ZDB-GENE-070912-413 445 si:dkey-193b15.5 "si:dkey-193b 0.387 0.202 0.347 1.4e-08
ZFIN|ZDB-GENE-060929-1102 445 zgc:153654 "zgc:153654" [Danio 0.443 0.231 0.309 4.5e-07
ZFIN|ZDB-GENE-050208-616 452 si:ch211-197g15.9 "si:ch211-19 0.396 0.203 0.313 7.5e-06
ZFIN|ZDB-GENE-050208-536 482 si:ch211-197g15.5 "si:ch211-19 0.396 0.190 0.313 1.9e-05
ZFIN|ZDB-GENE-050208-457 404 si:ch211-197g15.6 "si:ch211-19 0.396 0.227 0.292 7.1e-05
ZFIN|ZDB-GENE-030131-4763 491 si:ch211-197g15.7 "si:ch211-19 0.396 0.187 0.272 0.00028
TAIR|locus:2033755 AT1G32520 "AT1G32520" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 912 (326.1 bits), Expect = 1.7e-91, P = 1.7e-91
 Identities = 171/223 (76%), Positives = 195/223 (87%)

Query:    13 SP-NSLFGWNTGKKNSDEKPQAQPKIKYHE-VDLPFSLSLVDNTFLRGRELKCCYKATID 70
             SP NSLFGWN+GKK  + +P  QP   YH+ V++PFSLS+V+ TFL+GRELKCCYKA+ID
Sbjct:    22 SPYNSLFGWNSGKKIDNIRPPQQPA--YHDDVEIPFSLSMVNKTFLKGRELKCCYKASID 79

Query:    71 GFSATNFHSCCDFKGPCVIIGHT-NKSLKFGAFNPEGYRSTDDYYDTFDAFLFYWTDNNG 129
             GF AT FH  CDFKGPCVII +T +KS KFG F+PEGYRSTDDYYDTFDAFLFYW ++  
Sbjct:    80 GFGATKFHERCDFKGPCVIIAYTKDKSFKFGGFSPEGYRSTDDYYDTFDAFLFYWLED-- 137

Query:   130 KIDDPITLPKIGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSGIGDLRQ 189
               DDPI LPK+GGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSGIGDLR 
Sbjct:   138 -CDDPIVLPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSGIGDLRV 196

Query:   190 AKSRLGLSYAKREDGKESLFGDDSRATLEEVLVFCSPQIASLY 232
             AKSRLGLSYAKR+DGKES+FGD+++ +L++VLVFCSP IASLY
Sbjct:   197 AKSRLGLSYAKRKDGKESIFGDENKVSLDDVLVFCSPYIASLY 239




GO:0003674 "molecular_function" evidence=ND
GO:0008150 "biological_process" evidence=ND
GO:0009507 "chloroplast" evidence=ISM;IDA
ZFIN|ZDB-GENE-070912-413 si:dkey-193b15.5 "si:dkey-193b15.5" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060929-1102 zgc:153654 "zgc:153654" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050208-616 si:ch211-197g15.9 "si:ch211-197g15.9" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050208-536 si:ch211-197g15.5 "si:ch211-197g15.5" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050208-457 si:ch211-197g15.6 "si:ch211-197g15.6" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-4763 si:ch211-197g15.7 "si:ch211-197g15.7" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query232
pfam07534136 pfam07534, TLD, TLD 2e-09
smart00584165 smart00584, TLDc, domain in TBC and LysM domain co 4e-09
>gnl|CDD|219457 pfam07534, TLD, TLD Back     alignment and domain information
 Score = 54.2 bits (131), Expect = 2e-09
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 64  CYKATIDGFSATNFHSCCDFKGPCVIIGHTNKSLKFGAFNPEGYRST-DDYYDTFDAFLF 122
            Y ++  G S   F   CD KGP ++I   +    FGAF  + ++++   +Y   ++FLF
Sbjct: 2   LYSSSRHGSSLNTFLEKCDNKGPTLLIVKDDDGYVFGAFLSQPWKNSGKKFYGDGESFLF 61


This domain is predicted to be an enzyme and is often found associated with pfam01476. Length = 136

>gnl|CDD|214733 smart00584, TLDc, domain in TBC and LysM domain containing proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 232
PF07534139 TLD: TLD; InterPro: IPR006571 TLDc is a domain of 99.93
smart00584165 TLDc domain in TBC and LysM domain containing prot 99.91
KOG2557427 consensus Uncharacterized conserved protein, conta 99.81
KOG2372241 consensus Oxidation resistance protein [Replicatio 99.76
COG5142212 OXR1 Oxidation resistance protein [DNA replication 99.46
KOG2801559 consensus Probable Rab-GAPs [Intracellular traffic 98.06
KOG4636483 consensus Uncharacterized conserved protein with T 98.06
>PF07534 TLD: TLD; InterPro: IPR006571 TLDc is a domain of unknown function, restricted to eukaryotes, and commonly found in TBC (IPR000195 from INTERPRO) and LysM (IPR002482 from INTERPRO) domain containing proteins [] Back     alignment and domain information
Probab=99.93  E-value=7.3e-26  Score=180.14  Aligned_cols=132  Identities=27%  Similarity=0.476  Sum_probs=82.9

Q ss_pred             EEEeecccCCcHHHHHHhccCCCCEEEEEEeCCCCeEEeecCCCCCCCCC-ccCCCceEEEEEeCCCCCCCCCeeeeecC
Q 026848           63 CCYKATIDGFSATNFHSCCDFKGPCVIIGHTNKSLKFGAFNPEGYRSTDD-YYDTFDAFLFYWTDNNGKIDDPITLPKIG  141 (232)
Q Consensus        63 LlY~as~dGfs~~~Fh~~cd~kGptl~iiks~~g~VFGgY~s~~w~~~~~-~~~d~~aFLFsl~~~~~~~~~P~k~~~~~  141 (232)
                      |||++++||+|.++||++|++++|||+||++++|+|||||++++|..... |++|.++|||+|.+..      .+++..+
T Consensus         1 Lly~s~~dG~s~~~f~~~~~~~~~~l~iv~t~~g~iFG~y~~~~~~~~~~~~~~~~~~FlF~l~~~~------~~~~~~~   74 (139)
T PF07534_consen    1 LLYSSSRDGFSFNTFHSKCDGKGPTLLIVKTSDGQIFGAYTSQPWKSSNKGYFGDSESFLFSLEPKF------KIFKWTG   74 (139)
T ss_dssp             EEEEHHHH-S-HHHHHHHHTT-S-EEEEEEETTS-EEEEEESS-----SS--B--TT-EEEE-SSS-------EEEE--S
T ss_pred             CcCccchhCcCHHHHHHhcCCCCCEEEEEECCCCcEEEEEeCCcccccCccccCCCCeEEEEecccc------ceeeccc
Confidence            89999999999999999999999999999999999999999999987654 9999999999996543      2444433


Q ss_pred             CCCceEEeCCCCCcccCCC----CCccCCCCCCcCCCCCCCCCCCCCCCCcceeecCCcccccCCCCCcccc-CCCCcee
Q 026848          142 GSGAALFDYARGGPQFGAD----GLLIGPPLAPVMGGFAGPDTNSGIGDLRQAKSRLGLSYAKREDGKESLF-GDDSRAT  216 (232)
Q Consensus       142 ~~~~ai~~~~~~gp~FG~~----dL~I~~~l~~~~G~f~G~Dl~~~~~~~~~s~S~lG~tY~~~p~g~~s~l-ag~~~F~  216 (232)
                       ...+++.....++.||..    +|.|.                   .+...+.++.+.+|+..+     +. .+...|+
T Consensus        75 -~~~~~~~~~~~~~~fG~~~~~~~l~i~-------------------~~~~~~~~~~~~ty~~~~-----l~~~~~~~f~  129 (139)
T PF07534_consen   75 -KNQNYINCNNQGLGFGGGSNGFDLWID-------------------SDFNSGSSSHSETYGNPP-----LSNDGQESFD  129 (139)
T ss_dssp             -S----EEEETTEEEES-SSSS-SEEEE-------------------TTS-EEEE--BTTTTB-------SS--SSSEEE
T ss_pred             -ccceeeeccCCcceEeecCCceEEEEe-------------------CCCCcEEEeCCCccCCCc-----ccCCCCCCcE
Confidence             334555555678999973    45553                   255667777778995322     22 3788999


Q ss_pred             EeEEEEeec
Q 026848          217 LEEVLVFCS  225 (232)
Q Consensus       217 V~EiEVf~~  225 (232)
                      |.|||||..
T Consensus       130 i~~iEV~~~  138 (139)
T PF07534_consen  130 IDEIEVWGL  138 (139)
T ss_dssp             EEEEEEEE-
T ss_pred             EEEEEEEEE
Confidence            999999974



; PDB: 4ACJ_A.

>smart00584 TLDc domain in TBC and LysM domain containing proteins Back     alignment and domain information
>KOG2557 consensus Uncharacterized conserved protein, contains TLDc domain [Function unknown] Back     alignment and domain information
>KOG2372 consensus Oxidation resistance protein [Replication, recombination and repair] Back     alignment and domain information
>COG5142 OXR1 Oxidation resistance protein [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG2801 consensus Probable Rab-GAPs [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4636 consensus Uncharacterized conserved protein with TLDc domain [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query232
4acj_A167 WU\:FB25H12 protein,; immune system; 0.97A {Danio 2e-10
>4acj_A WU\:FB25H12 protein,; immune system; 0.97A {Danio rerio} Length = 167 Back     alignment and structure
 Score = 56.7 bits (136), Expect = 2e-10
 Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 1/74 (1%)

Query: 56  LRGRELKCCYKATIDGFSATNFHSCC-DFKGPCVIIGHTNKSLKFGAFNPEGYRSTDDYY 114
             G      +  +  G S    +    D   P +++   +    FGA   E ++ ++ +Y
Sbjct: 24  TIGYPWNLAFSTSKHGMSIKTLYRAMQDQDSPMLLVIKDSDGQIFGALASEPFKVSEGFY 83

Query: 115 DTFDAFLFYWTDNN 128
            T + FLF +    
Sbjct: 84  GTGETFLFTFYPEF 97


Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query232
4acj_A167 WU\:FB25H12 protein,; immune system; 0.97A {Danio 99.94
>4acj_A WU\:FB25H12 protein,; immune system; 0.97A {Danio rerio} Back     alignment and structure
Probab=99.94  E-value=5.7e-27  Score=195.19  Aligned_cols=136  Identities=15%  Similarity=0.315  Sum_probs=114.1

Q ss_pred             CceeEEEEeecccCCcHHHHHHhccCC-CCEEEEEEeCCCCeEEeecCCCCCCCCCccCCCceEEEEEeCCCCCCCCCee
Q 026848           58 GRELKCCYKATIDGFSATNFHSCCDFK-GPCVIIGHTNKSLKFGAFNPEGYRSTDDYYDTFDAFLFYWTDNNGKIDDPIT  136 (232)
Q Consensus        58 ~~~~~LlY~as~dGfs~~~Fh~~cd~k-Gptl~iiks~~g~VFGgY~s~~w~~~~~~~~d~~aFLFsl~~~~~~~~~P~k  136 (232)
                      ..+|+|||++++||+|.++||++|+++ ||||+|||+++|+|||||++++|.....|+++.+||||++.+..      .+
T Consensus        26 ~~~w~LlYss~~hG~S~~~~~~~~~~~~~ptllvik~~~g~vFGaf~s~~w~~~~~~~G~~~sFLF~l~p~~------~~   99 (167)
T 4acj_A           26 GYPWNLAFSTSKHGMSIKTLYRAMQDQDSPMLLVIKDSDGQIFGALASEPFKVSEGFYGTGETFLFTFYPEF------EA   99 (167)
T ss_dssp             TCCCEEEEEHHHHCSCHHHHHHHHTTCCSCEEEEEEETTSCEEEEEESSCCCCCSSCBCCTTCEEEECSSSC------EE
T ss_pred             cCCCeEEEEeccCCccHHHHHHHhcCCCCCEEEEEEcCCceEEEEEeCCcccccCcccCCCCeEEEEEcCCC------cc
Confidence            568999999999999999999999995 99999999999999999999999999999999999999998754      47


Q ss_pred             eeecCCCCceEEeCCCCCcccCCC----CCccCCCCCCcCCCCCCCCCCCCCCCCcceeecCCcccccCCCCCccccCCC
Q 026848          137 LPKIGGSGAALFDYARGGPQFGAD----GLLIGPPLAPVMGGFAGPDTNSGIGDLRQAKSRLGLSYAKREDGKESLFGDD  212 (232)
Q Consensus       137 ~~~~~~~~~ai~~~~~~gp~FG~~----dL~I~~~l~~~~G~f~G~Dl~~~~~~~~~s~S~lG~tY~~~p~g~~s~lag~  212 (232)
                      ++..+.+.+.++... .+..||+.    +|.|+                   ++...+.|.-+.||.      +..|+++
T Consensus       100 y~~tg~N~~f~~~~~-~~l~~Ggg~g~~~L~id-------------------~~l~~G~s~~c~Tf~------n~~L~~~  153 (167)
T 4acj_A          100 YKWTGDNLFFIKGDM-DSLAFGGGSGEFGLWLD-------------------GDLYHGRNHSCKTFG------NPMLSMK  153 (167)
T ss_dssp             EECCSSCCCCEEEET-TEEEESCSSSSCSEEEE-------------------TTSCEEEECCBTTTT------BCCSSSS
T ss_pred             ccccCCCceEEEeCC-CccccCCCCCceEEEEe-------------------CCCCCEEeCCCCCCC------CcccCCC
Confidence            887777778887763 57788874    23332                   345667777778995      3457778


Q ss_pred             CceeEeEEEEeec
Q 026848          213 SRATLEEVLVFCS  225 (232)
Q Consensus       213 ~~F~V~EiEVf~~  225 (232)
                      .+|+|.+||||..
T Consensus       154 ~~F~i~~vEvW~~  166 (167)
T 4acj_A          154 EDFFVQDIEIWSF  166 (167)
T ss_dssp             SEEEEEEEEEEEC
T ss_pred             CceEEEEEEEEEE
Confidence            8999999999964




Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00