Citrus Sinensis ID: 026848
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 232 | ||||||
| 297742118 | 737 | unnamed protein product [Vitis vinifera] | 0.974 | 0.306 | 0.842 | 1e-111 | |
| 225427246 | 229 | PREDICTED: uncharacterized protein LOC10 | 0.974 | 0.986 | 0.842 | 1e-107 | |
| 224126307 | 229 | predicted protein [Populus trichocarpa] | 0.961 | 0.973 | 0.854 | 1e-107 | |
| 356563455 | 230 | PREDICTED: uncharacterized protein LOC10 | 0.974 | 0.982 | 0.813 | 1e-103 | |
| 255557621 | 233 | conserved hypothetical protein [Ricinus | 0.982 | 0.978 | 0.789 | 1e-103 | |
| 147765513 | 231 | hypothetical protein VITISV_004431 [Viti | 0.935 | 0.939 | 0.840 | 1e-102 | |
| 357476693 | 229 | hypothetical protein MTR_4g098620 [Medic | 0.969 | 0.982 | 0.779 | 1e-102 | |
| 449462003 | 233 | PREDICTED: uncharacterized protein LOC10 | 0.978 | 0.974 | 0.747 | 1e-96 | |
| 79356329 | 239 | uncharacterized protein [Arabidopsis tha | 0.918 | 0.891 | 0.768 | 1e-91 | |
| 326506144 | 266 | predicted protein [Hordeum vulgare subsp | 0.974 | 0.849 | 0.659 | 3e-86 |
| >gi|297742118|emb|CBI33905.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust.
Identities = 198/235 (84%), Positives = 211/235 (89%), Gaps = 9/235 (3%)
Query: 1 MAFCISNSAI--WK-SPNSLFGWNTGKKNSDEKPQAQPKIKYHEVDLPFSLSLVDNTFLR 57
MA C+SNSA+ WK SP SLFGWNTG+KN+D+ PQ KY+++DLPFS SLV TFLR
Sbjct: 509 MACCVSNSALQWWKTSPRSLFGWNTGRKNTDDSPQP----KYYDIDLPFSPSLVAKTFLR 564
Query: 58 GRELKCCYKATIDGFSATNFHSCCDFKGPCVIIGHTNKSLKFGAFNPEGYRSTDDYYDTF 117
G+ELKCCYKA+IDGFSATNFH CCDFKGPCVIIG+TNKS KFGAFNPEGYRSTDDYYDTF
Sbjct: 565 GKELKCCYKASIDGFSATNFHGCCDFKGPCVIIGYTNKSFKFGAFNPEGYRSTDDYYDTF 624
Query: 118 DAFLFYWTDNNGKIDDPITLPKIGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAG 177
DAFLFYWTDN DPI LPK+GGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAG
Sbjct: 625 DAFLFYWTDNEK--SDPIILPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAG 682
Query: 178 PDTNSGIGDLRQAKSRLGLSYAKREDGKESLFGDDSRATLEEVLVFCSPQIASLY 232
PDTNSGIGDLRQAKSRLGLSYAKR DGKESLFGD+SRATLEEV VFCSPQIASLY
Sbjct: 683 PDTNSGIGDLRQAKSRLGLSYAKRVDGKESLFGDESRATLEEVQVFCSPQIASLY 737
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225427246|ref|XP_002278575.1| PREDICTED: uncharacterized protein LOC100250549 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224126307|ref|XP_002329522.1| predicted protein [Populus trichocarpa] gi|222870231|gb|EEF07362.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356563455|ref|XP_003549978.1| PREDICTED: uncharacterized protein LOC100527047 [Glycine max] | Back alignment and taxonomy information |
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| >gi|255557621|ref|XP_002519840.1| conserved hypothetical protein [Ricinus communis] gi|223540886|gb|EEF42444.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|147765513|emb|CAN78112.1| hypothetical protein VITISV_004431 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|357476693|ref|XP_003608632.1| hypothetical protein MTR_4g098620 [Medicago truncatula] gi|355509687|gb|AES90829.1| hypothetical protein MTR_4g098620 [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|449462003|ref|XP_004148731.1| PREDICTED: uncharacterized protein LOC101203266 [Cucumis sativus] gi|449521146|ref|XP_004167591.1| PREDICTED: uncharacterized LOC101203266 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|79356329|ref|NP_174530.2| uncharacterized protein [Arabidopsis thaliana] gi|51968764|dbj|BAD43074.1| unknown protein [Arabidopsis thaliana] gi|332193375|gb|AEE31496.1| uncharacterized protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|326506144|dbj|BAJ91311.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326511689|dbj|BAJ91989.1| predicted protein [Hordeum vulgare subsp. vulgare] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 232 | ||||||
| TAIR|locus:2033755 | 239 | AT1G32520 "AT1G32520" [Arabido | 0.926 | 0.899 | 0.766 | 1.7e-91 | |
| ZFIN|ZDB-GENE-070912-413 | 445 | si:dkey-193b15.5 "si:dkey-193b | 0.387 | 0.202 | 0.347 | 1.4e-08 | |
| ZFIN|ZDB-GENE-060929-1102 | 445 | zgc:153654 "zgc:153654" [Danio | 0.443 | 0.231 | 0.309 | 4.5e-07 | |
| ZFIN|ZDB-GENE-050208-616 | 452 | si:ch211-197g15.9 "si:ch211-19 | 0.396 | 0.203 | 0.313 | 7.5e-06 | |
| ZFIN|ZDB-GENE-050208-536 | 482 | si:ch211-197g15.5 "si:ch211-19 | 0.396 | 0.190 | 0.313 | 1.9e-05 | |
| ZFIN|ZDB-GENE-050208-457 | 404 | si:ch211-197g15.6 "si:ch211-19 | 0.396 | 0.227 | 0.292 | 7.1e-05 | |
| ZFIN|ZDB-GENE-030131-4763 | 491 | si:ch211-197g15.7 "si:ch211-19 | 0.396 | 0.187 | 0.272 | 0.00028 |
| TAIR|locus:2033755 AT1G32520 "AT1G32520" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 912 (326.1 bits), Expect = 1.7e-91, P = 1.7e-91
Identities = 171/223 (76%), Positives = 195/223 (87%)
Query: 13 SP-NSLFGWNTGKKNSDEKPQAQPKIKYHE-VDLPFSLSLVDNTFLRGRELKCCYKATID 70
SP NSLFGWN+GKK + +P QP YH+ V++PFSLS+V+ TFL+GRELKCCYKA+ID
Sbjct: 22 SPYNSLFGWNSGKKIDNIRPPQQPA--YHDDVEIPFSLSMVNKTFLKGRELKCCYKASID 79
Query: 71 GFSATNFHSCCDFKGPCVIIGHT-NKSLKFGAFNPEGYRSTDDYYDTFDAFLFYWTDNNG 129
GF AT FH CDFKGPCVII +T +KS KFG F+PEGYRSTDDYYDTFDAFLFYW ++
Sbjct: 80 GFGATKFHERCDFKGPCVIIAYTKDKSFKFGGFSPEGYRSTDDYYDTFDAFLFYWLED-- 137
Query: 130 KIDDPITLPKIGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSGIGDLRQ 189
DDPI LPK+GGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSGIGDLR
Sbjct: 138 -CDDPIVLPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSGIGDLRV 196
Query: 190 AKSRLGLSYAKREDGKESLFGDDSRATLEEVLVFCSPQIASLY 232
AKSRLGLSYAKR+DGKES+FGD+++ +L++VLVFCSP IASLY
Sbjct: 197 AKSRLGLSYAKRKDGKESIFGDENKVSLDDVLVFCSPYIASLY 239
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| ZFIN|ZDB-GENE-070912-413 si:dkey-193b15.5 "si:dkey-193b15.5" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-060929-1102 zgc:153654 "zgc:153654" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-050208-616 si:ch211-197g15.9 "si:ch211-197g15.9" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-050208-536 si:ch211-197g15.5 "si:ch211-197g15.5" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-050208-457 si:ch211-197g15.6 "si:ch211-197g15.6" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-030131-4763 si:ch211-197g15.7 "si:ch211-197g15.7" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 232 | |||
| pfam07534 | 136 | pfam07534, TLD, TLD | 2e-09 | |
| smart00584 | 165 | smart00584, TLDc, domain in TBC and LysM domain co | 4e-09 |
| >gnl|CDD|219457 pfam07534, TLD, TLD | Back alignment and domain information |
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Score = 54.2 bits (131), Expect = 2e-09
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 64 CYKATIDGFSATNFHSCCDFKGPCVIIGHTNKSLKFGAFNPEGYRST-DDYYDTFDAFLF 122
Y ++ G S F CD KGP ++I + FGAF + ++++ +Y ++FLF
Sbjct: 2 LYSSSRHGSSLNTFLEKCDNKGPTLLIVKDDDGYVFGAFLSQPWKNSGKKFYGDGESFLF 61
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This domain is predicted to be an enzyme and is often found associated with pfam01476. Length = 136 |
| >gnl|CDD|214733 smart00584, TLDc, domain in TBC and LysM domain containing proteins | Back alignment and domain information |
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Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 232 | |||
| PF07534 | 139 | TLD: TLD; InterPro: IPR006571 TLDc is a domain of | 99.93 | |
| smart00584 | 165 | TLDc domain in TBC and LysM domain containing prot | 99.91 | |
| KOG2557 | 427 | consensus Uncharacterized conserved protein, conta | 99.81 | |
| KOG2372 | 241 | consensus Oxidation resistance protein [Replicatio | 99.76 | |
| COG5142 | 212 | OXR1 Oxidation resistance protein [DNA replication | 99.46 | |
| KOG2801 | 559 | consensus Probable Rab-GAPs [Intracellular traffic | 98.06 | |
| KOG4636 | 483 | consensus Uncharacterized conserved protein with T | 98.06 |
| >PF07534 TLD: TLD; InterPro: IPR006571 TLDc is a domain of unknown function, restricted to eukaryotes, and commonly found in TBC (IPR000195 from INTERPRO) and LysM (IPR002482 from INTERPRO) domain containing proteins [] | Back alignment and domain information |
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Probab=99.93 E-value=7.3e-26 Score=180.14 Aligned_cols=132 Identities=27% Similarity=0.476 Sum_probs=82.9
Q ss_pred EEEeecccCCcHHHHHHhccCCCCEEEEEEeCCCCeEEeecCCCCCCCCC-ccCCCceEEEEEeCCCCCCCCCeeeeecC
Q 026848 63 CCYKATIDGFSATNFHSCCDFKGPCVIIGHTNKSLKFGAFNPEGYRSTDD-YYDTFDAFLFYWTDNNGKIDDPITLPKIG 141 (232)
Q Consensus 63 LlY~as~dGfs~~~Fh~~cd~kGptl~iiks~~g~VFGgY~s~~w~~~~~-~~~d~~aFLFsl~~~~~~~~~P~k~~~~~ 141 (232)
|||++++||+|.++||++|++++|||+||++++|+|||||++++|..... |++|.++|||+|.+.. .+++..+
T Consensus 1 Lly~s~~dG~s~~~f~~~~~~~~~~l~iv~t~~g~iFG~y~~~~~~~~~~~~~~~~~~FlF~l~~~~------~~~~~~~ 74 (139)
T PF07534_consen 1 LLYSSSRDGFSFNTFHSKCDGKGPTLLIVKTSDGQIFGAYTSQPWKSSNKGYFGDSESFLFSLEPKF------KIFKWTG 74 (139)
T ss_dssp EEEEHHHH-S-HHHHHHHHTT-S-EEEEEEETTS-EEEEEESS-----SS--B--TT-EEEE-SSS-------EEEE--S
T ss_pred CcCccchhCcCHHHHHHhcCCCCCEEEEEECCCCcEEEEEeCCcccccCccccCCCCeEEEEecccc------ceeeccc
Confidence 89999999999999999999999999999999999999999999987654 9999999999996543 2444433
Q ss_pred CCCceEEeCCCCCcccCCC----CCccCCCCCCcCCCCCCCCCCCCCCCCcceeecCCcccccCCCCCcccc-CCCCcee
Q 026848 142 GSGAALFDYARGGPQFGAD----GLLIGPPLAPVMGGFAGPDTNSGIGDLRQAKSRLGLSYAKREDGKESLF-GDDSRAT 216 (232)
Q Consensus 142 ~~~~ai~~~~~~gp~FG~~----dL~I~~~l~~~~G~f~G~Dl~~~~~~~~~s~S~lG~tY~~~p~g~~s~l-ag~~~F~ 216 (232)
...+++.....++.||.. +|.|. .+...+.++.+.+|+..+ +. .+...|+
T Consensus 75 -~~~~~~~~~~~~~~fG~~~~~~~l~i~-------------------~~~~~~~~~~~~ty~~~~-----l~~~~~~~f~ 129 (139)
T PF07534_consen 75 -KNQNYINCNNQGLGFGGGSNGFDLWID-------------------SDFNSGSSSHSETYGNPP-----LSNDGQESFD 129 (139)
T ss_dssp -S----EEEETTEEEES-SSSS-SEEEE-------------------TTS-EEEE--BTTTTB-------SS--SSSEEE
T ss_pred -ccceeeeccCCcceEeecCCceEEEEe-------------------CCCCcEEEeCCCccCCCc-----ccCCCCCCcE
Confidence 334555555678999973 45553 255667777778995322 22 3788999
Q ss_pred EeEEEEeec
Q 026848 217 LEEVLVFCS 225 (232)
Q Consensus 217 V~EiEVf~~ 225 (232)
|.|||||..
T Consensus 130 i~~iEV~~~ 138 (139)
T PF07534_consen 130 IDEIEVWGL 138 (139)
T ss_dssp EEEEEEEE-
T ss_pred EEEEEEEEE
Confidence 999999974
|
; PDB: 4ACJ_A. |
| >smart00584 TLDc domain in TBC and LysM domain containing proteins | Back alignment and domain information |
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| >KOG2557 consensus Uncharacterized conserved protein, contains TLDc domain [Function unknown] | Back alignment and domain information |
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| >KOG2372 consensus Oxidation resistance protein [Replication, recombination and repair] | Back alignment and domain information |
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| >COG5142 OXR1 Oxidation resistance protein [DNA replication, recombination, and repair] | Back alignment and domain information |
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| >KOG2801 consensus Probable Rab-GAPs [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
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| >KOG4636 consensus Uncharacterized conserved protein with TLDc domain [Function unknown] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 232 | |||
| 4acj_A | 167 | WU\:FB25H12 protein,; immune system; 0.97A {Danio | 2e-10 |
| >4acj_A WU\:FB25H12 protein,; immune system; 0.97A {Danio rerio} Length = 167 | Back alignment and structure |
|---|
Score = 56.7 bits (136), Expect = 2e-10
Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 1/74 (1%)
Query: 56 LRGRELKCCYKATIDGFSATNFHSCC-DFKGPCVIIGHTNKSLKFGAFNPEGYRSTDDYY 114
G + + G S + D P +++ + FGA E ++ ++ +Y
Sbjct: 24 TIGYPWNLAFSTSKHGMSIKTLYRAMQDQDSPMLLVIKDSDGQIFGALASEPFKVSEGFY 83
Query: 115 DTFDAFLFYWTDNN 128
T + FLF +
Sbjct: 84 GTGETFLFTFYPEF 97
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 232 | |||
| 4acj_A | 167 | WU\:FB25H12 protein,; immune system; 0.97A {Danio | 99.94 |
| >4acj_A WU\:FB25H12 protein,; immune system; 0.97A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.7e-27 Score=195.19 Aligned_cols=136 Identities=15% Similarity=0.315 Sum_probs=114.1
Q ss_pred CceeEEEEeecccCCcHHHHHHhccCC-CCEEEEEEeCCCCeEEeecCCCCCCCCCccCCCceEEEEEeCCCCCCCCCee
Q 026848 58 GRELKCCYKATIDGFSATNFHSCCDFK-GPCVIIGHTNKSLKFGAFNPEGYRSTDDYYDTFDAFLFYWTDNNGKIDDPIT 136 (232)
Q Consensus 58 ~~~~~LlY~as~dGfs~~~Fh~~cd~k-Gptl~iiks~~g~VFGgY~s~~w~~~~~~~~d~~aFLFsl~~~~~~~~~P~k 136 (232)
..+|+|||++++||+|.++||++|+++ ||||+|||+++|+|||||++++|.....|+++.+||||++.+.. .+
T Consensus 26 ~~~w~LlYss~~hG~S~~~~~~~~~~~~~ptllvik~~~g~vFGaf~s~~w~~~~~~~G~~~sFLF~l~p~~------~~ 99 (167)
T 4acj_A 26 GYPWNLAFSTSKHGMSIKTLYRAMQDQDSPMLLVIKDSDGQIFGALASEPFKVSEGFYGTGETFLFTFYPEF------EA 99 (167)
T ss_dssp TCCCEEEEEHHHHCSCHHHHHHHHTTCCSCEEEEEEETTSCEEEEEESSCCCCCSSCBCCTTCEEEECSSSC------EE
T ss_pred cCCCeEEEEeccCCccHHHHHHHhcCCCCCEEEEEEcCCceEEEEEeCCcccccCcccCCCCeEEEEEcCCC------cc
Confidence 568999999999999999999999995 99999999999999999999999999999999999999998754 47
Q ss_pred eeecCCCCceEEeCCCCCcccCCC----CCccCCCCCCcCCCCCCCCCCCCCCCCcceeecCCcccccCCCCCccccCCC
Q 026848 137 LPKIGGSGAALFDYARGGPQFGAD----GLLIGPPLAPVMGGFAGPDTNSGIGDLRQAKSRLGLSYAKREDGKESLFGDD 212 (232)
Q Consensus 137 ~~~~~~~~~ai~~~~~~gp~FG~~----dL~I~~~l~~~~G~f~G~Dl~~~~~~~~~s~S~lG~tY~~~p~g~~s~lag~ 212 (232)
++..+.+.+.++... .+..||+. +|.|+ ++...+.|.-+.||. +..|+++
T Consensus 100 y~~tg~N~~f~~~~~-~~l~~Ggg~g~~~L~id-------------------~~l~~G~s~~c~Tf~------n~~L~~~ 153 (167)
T 4acj_A 100 YKWTGDNLFFIKGDM-DSLAFGGGSGEFGLWLD-------------------GDLYHGRNHSCKTFG------NPMLSMK 153 (167)
T ss_dssp EECCSSCCCCEEEET-TEEEESCSSSSCSEEEE-------------------TTSCEEEECCBTTTT------BCCSSSS
T ss_pred ccccCCCceEEEeCC-CccccCCCCCceEEEEe-------------------CCCCCEEeCCCCCCC------CcccCCC
Confidence 887777778887763 57788874 23332 345667777778995 3457778
Q ss_pred CceeEeEEEEeec
Q 026848 213 SRATLEEVLVFCS 225 (232)
Q Consensus 213 ~~F~V~EiEVf~~ 225 (232)
.+|+|.+||||..
T Consensus 154 ~~F~i~~vEvW~~ 166 (167)
T 4acj_A 154 EDFFVQDIEIWSF 166 (167)
T ss_dssp SEEEEEEEEEEEC
T ss_pred CceEEEEEEEEEE
Confidence 8999999999964
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00