Citrus Sinensis ID: 026862

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230--
Protein Sequence
MALSSSSSSLCLHSATVLSGSQFSTPQLLFPPRVSFSYFPTKLNNNYQNNRNLSSSEYYHSSASQKWRASVSFFPAFLNKGKDAKVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEPLKSDLLNGKWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGPFFNQVTADLTPLNSRKVAVQFDYFKIGGLIPVKAPNTARGELETTYLDEDLR
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHcccccccccccccccEEEEEEEccccccccccccccccccEEEEEEccccEEEEEEEccccEEEEEEEEEccccEEEEEEEEEEEccccccccccccEEEEEEEEEccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccccccccHHHccccEEEEEEccHHHHcccccccEEEcEEEEEEEccccEEEEEEEccccEEEEEEEEEccccEEEEEEEEEEEccccccccccccccEEEEEEEccccc
Coil and Loop (DISEMBL)
malsssssslclhsatvlsgsqfstpqllfpprvsfsyfptklnnnyqnnrnlssSEYYHSSASQKWRASVSFFpaflnkgkDAKVLKEELLEAIapldrgaeatpedQQRVEQIARKLegvnptkeplksdllngkWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRaqnmesgpffnqvtadltplnsrkvavqfdyfkigglipvkapntargelettyldedlr
Flexible Loop (DISEMBL)
malsssssslCLHSATVLSGSQFSTPQLLFPPRVSFSYFPTKLNNNYQNNRNLSSSEYYHSSASQKWRASVSFFPAFLNKGKDAKVLKEELLEAIapldrgaeatpedQQRVEQIArklegvnptkeplksdllnGKWELIYTTSqsilqtqrprflRSVRNYQAINVDTLRAQNMESGPFFNQVTADLTPLNSRKVAVQFDYFKIgglipvkapntargelettyldedlr
Low Complexity Region (SEG)
MAlsssssslclhsATVLSGSQFSTPQLLFPPRVSFSYFPTKLnnnyqnnrnLssseyyhssasQKWRASVSFFPAFLNKGKDAKVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEPLKSDLLNGKWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGPFFNQVTADLTPLNSRKVAVQFDYFKIGGLIPVKAPNTARGELETTYLDEDLR
Disordered region (IsUnstruct)
***********L**ATVLSGSQFSTPQLLFPPRVSFSYFPTKLNNNY******************KWRASVSFFPAFLNKGKDAKVLKEELLEAI************************************DLLNGKWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGPFFNQVTADLTPLNSRKVAVQFDYFKIGGLIPVKAP*****************
Disordered Region (DISOPRED)
**************************************************************************************LKEELLEAIAPLDR******EDQQRVEQIARKLEGVNPTKEPLKSDLLNGKWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGPFFNQVTADLTPLNSRKVAVQFDYFKIGGLIPVKAPNTARGELETTYLDEDLR
Disordered Region (DISEMBL)
***********LHSATVLSGSQFSTPQLLFPPRVSFSYFPTKLNNNYQNNRNLSSS**********WRASVSFFPAFLNKGKDAKVLKEELLEAIAPLDRG********QRVEQIARKLEGVNPTKEPLKSDLLNGKWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGPFFNQVTADLTPLNSRKVAVQFDYFKIGGLIPVKAPNTARGELETTYLDEDLR
Disordered Region (DISPRO)
************************TPQLLFPPRVSFSYFPTKLNNN*****************SQKWRASVSFFPAFLNKGKDAKVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEPLKSDLLNGKWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGPFFNQVTADLTPLNSRKVAVQFDYFKIGGLIPVKAPNTARGELETTYLDE***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MALSSSSSSLCLHSATVLSGSQFSTPQLLFPPRVSFSYFPTKLNNNYQNNRNLSSSEYYHSSASQKWRASVSFFPAFLNKGKDAKVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEPLKSDLLNGKWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGPFFNQVTADLTPLNSRKVAVQFDYFKIGGLIPVKAPNTARGELETTYLDEDLR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	232	2.2.26 [Sep-21-2011]
Q9LU85	242	Probable plastid-lipid-as	yes	no	0.926	0.888	0.542	2e-62
Q6DBN2	234	Probable plastid-lipid-as	no	no	0.702	0.696	0.646	5e-56
Q5M755	273	Probable plastid-lipid-as	no	no	0.607	0.516	0.274	3e-06
Q941D3	239	Probable plastid-lipid-as	no	no	0.607	0.589	0.291	5e-05
Q6K439	319	Probable plastid-lipid-as	no	no	0.521	0.379	0.297	5e-05
Q8LAP6	409	Probable plastid-lipid-as	no	no	0.560	0.317	0.266	0.0002
Q94KU6	319	Plastid lipid-associated	N/A	no	0.271	0.197	0.375	0.0005
Q9ZWQ8	323	Plastid-lipid-associated	N/A	no	0.25	0.179	0.389	0.0005

>sp|Q9LU85|PAP4_ARATH Probable plastid-lipid-associated protein 4, chloroplastic OS=Arabidopsis thaliana GN=PAP4 PE=1 SV=1

 Score =  238 bits (607), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 128/236 (54%), Positives = 164/236 (69%), Gaps = 21/236 (8%)

Query: 1   MALSSSSSSLCLHSATVLS-GSQFSTPQLLFPPRVSFSYFPTKLNNNYQNNRNLSSSEYY 59
           MAL S     CL +  ++S  + F+    L      F+  PTKL +  + +R        
Sbjct: 1   MALPS-----CLKTGALMSPATGFNFSGSLMKSDSGFAV-PTKLQSTRKGDRE------- 47

Query: 60  HSSASQKWRASVSFFPAFLNKGKDA---KVLKEELLEAIAPLDRGAEATPEDQQRVEQIA 116
                 + +A  SF PAFL +   A   K LK+ELLEAI PL+RGA A+P+DQ R++Q+A
Sbjct: 48  ----RLRVQAIFSFPPAFLTRNGRAEKQKQLKQELLEAIEPLERGATASPDDQLRIDQLA 103

Query: 117 RKLEGVNPTKEPLKSDLLNGKWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNM 176
           RK+E VNPTKEPLKSDL+NGKWELIYTTS SILQ ++PRFLRS+ NYQ+INVDTL+ QNM
Sbjct: 104 RKVEAVNPTKEPLKSDLVNGKWELIYTTSASILQAKKPRFLRSITNYQSINVDTLKVQNM 163

Query: 177 ESGPFFNQVTADLTPLNSRKVAVQFDYFKIGGLIPVKAPNTARGELETTYLDEDLR 232
           E+ PF+N VT D+ PLNS+KVAV+   FKI G IP+KAP++ARGELE TY+DE+LR
Sbjct: 164 ETWPFYNSVTGDIKPLNSKKVAVKLQVFKILGFIPIKAPDSARGELEITYVDEELR 219

Arabidopsis thaliana (taxid: 3702)

>sp|Q6DBN2|PAP5_ARATH Probable plastid-lipid-associated protein 5, chloroplastic OS=Arabidopsis thaliana GN=PAP5 PE=2 SV=1

 Score =  217 bits (553), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 106/164 (64%), Positives = 130/164 (79%), Gaps = 1/164 (0%)

Query: 70  SVSFFPAFLNKGKDAKVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEPL 129
           +V  FP      +  K LK EL+EAI PL+RGA A+P+DQ  ++Q+ARK+E VNPTKEPL
Sbjct: 48  AVFSFPPRNGGAEKRKQLKHELVEAIEPLERGATASPDDQLLIDQLARKVEAVNPTKEPL 107

Query: 130 KSDLLNGKWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGPFFNQVTADL 189
           KSDL+NGKWELIYTTS +ILQ ++PRFLRS+ NYQ IN+DTL+ Q ME+ PF+N VT DL
Sbjct: 108 KSDLINGKWELIYTTSAAILQAKKPRFLRSLTNYQCINMDTLKVQRMETWPFYNSVTGDL 167

Query: 190 TPLNSRKVAVQFDYFKIGGLIPVKAPN-TARGELETTYLDEDLR 232
           TPLNS+ VAV+   FKI G IPVKAP+ TARGELE TY+DE+LR
Sbjct: 168 TPLNSKTVAVKLQVFKILGFIPVKAPDGTARGELEITYVDEELR 211

Arabidopsis thaliana (taxid: 3702)

>sp|Q5M755|PAP7_ARATH Probable plastid-lipid-associated protein 7, chloroplastic OS=Arabidopsis thaliana GN=PAP7 PE=2 SV=1

 Score = 52.4 bits (124), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 83/175 (47%), Gaps = 34/175 (19%)

Query: 87  LKEELLEAIAPLDRGAEATPEDQQ-RVEQIARKLEGVNPTKEPLKS-DLLNGKWELIYTT 144
           +KEEL EA+  ++RG      D++  +E + + LE  NPT EP    D + G W+LIY+T
Sbjct: 86  IKEELYEALKGINRGIFGVKSDKKTEIEGLVKLLECRNPTPEPTGELDKIGGCWKLIYST 145

Query: 145 SQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGPFFNQVTADLTPLN----------- 193
             ++L ++R +    +R++ ++  D L+  ++  G   + +  D+  LN           
Sbjct: 146 I-TVLGSKRTKL--GLRDFVSLG-DLLQQIDIAQGKTVHVLKFDVRGLNLLDGEFRIVAS 201

Query: 194 ---SRKVAVQFDYFKIGGLIPVKAPNTAR-------------GELETTYLDEDLR 232
              S K +V+  Y +   + P +  N  R             G  E +YLDEDL+
Sbjct: 202 FKISSKSSVEITY-ESSTIKPDQLMNIFRKNMDLLLGIFNPEGLFEISYLDEDLQ 255

Arabidopsis thaliana (taxid: 3702)

>sp|Q941D3|PAP8_ARATH Probable plastid-lipid-associated protein 8, chloroplastic OS=Arabidopsis thaliana GN=PAP8 PE=2 SV=1

 Score = 48.1 bits (113), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 78/161 (48%), Gaps = 20/161 (12%)

Query: 87  LKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEPLKSDLLNGKWELIYTTS- 145
           L   LL  +A  D G   +PE  + V Q+A +L+     KEP+K+ L+ G WE++Y +  
Sbjct: 68  LISTLLSKVANSDGGVTLSPEQHKEVAQVAGELQKYC-VKEPVKNPLIFGDWEVVYCSRP 126

Query: 146 -------QSILQTQRPRFLRSVRNYQAINV-DTLRAQ-NMESGPFFN---QVTADLTPLN 193
                  +S++      F ++    QAI+  D +R + ++ +  F +    +T  L  L+
Sbjct: 127 TSPGGGYRSVIGRL---FFKTKEMIQAIDAPDIVRNKVSINAFGFLDGDVSLTGKLKALD 183

Query: 194 SRKVAVQFD--YFKIGGLIPVKAPNTARGELETTYLDEDLR 232
           S  V V F+    K+G L   K    +  +L  TY+DE LR
Sbjct: 184 SEWVQVIFEPPEIKVGSL-EFKYGFESEVKLRITYVDEKLR 223

Arabidopsis thaliana (taxid: 3702)

>sp|Q6K439|PAP2_ORYSJ Probable plastid-lipid-associated protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=PAP2 PE=2 SV=1

 Score = 48.1 bits (113), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 61/131 (46%), Gaps = 10/131 (7%)

Query: 87  LKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEPLKS-DLLNGKWELIYTTS 145
           LK +L EA+   +RG  A+ E +  V ++  +LE  NPT  P ++  LLNGKW L YT+ 
Sbjct: 95  LKAKLKEALYGTERGLRASSETRAEVVELITQLEARNPTPAPTEALTLLNGKWILAYTSF 154

Query: 146 QSIL----QTQRPRFLRSVRNYQAINVDTLRAQNME--SGPFFN---QVTADLTPLNSRK 196
             +         P+ ++     Q I+ +    QN    SGP         A     + ++
Sbjct: 155 SQLFPLLGSGSLPQLVKVEEISQTIDSENFTVQNCIKFSGPLATTSVSTNAKFEVRSPKR 214

Query: 197 VAVQFDYFKIG 207
           V ++FD   IG
Sbjct: 215 VQIKFDEGIIG 225

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8LAP6|PAP12_ARATH Probable plastid-lipid-associated protein 12, chloroplastic OS=Arabidopsis thaliana GN=PAP12 PE=2 SV=1

 Score = 46.2 bits (108), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 35/165 (21%)

Query: 90  ELLEAIAPL-DRGAEATPEDQQRVEQIARKLEGVNPTKEPLKSDLLNGKWELIYTTSQSI 148
           +L++A+  +  RG  A+P+    VE   + LEG+   + P  SDL+ G+W L++TT    
Sbjct: 77  KLIDALIGIQGRGKSASPKQLNDVESAVKVLEGLEGIQNPTDSDLIEGRWRLMFTT---- 132

Query: 149 LQTQRPRFLRSV-RNYQAINVDT------LRAQN-------MESGPFFNQ--VTADLTPL 192
               RP     + R +  ++V T      L+A N       ++   F  +  V A  +  
Sbjct: 133 ----RPGTASPIQRTFTGVDVFTVFQDVYLKATNDPRVSNIVKFSDFIGELKVEAVASIK 188

Query: 193 NSRKVAVQFDYFKIG-GLIPVKAP---------NTARGELETTYL 227
           + ++V  +FD        +P K P         + A+G L+TTYL
Sbjct: 189 DGKRVLFRFDRAAFDLKFLPFKVPYPVPFRLLGDEAKGWLDTTYL 233

Arabidopsis thaliana (taxid: 3702)

>sp|Q94KU6|PAP2_BRACM Plastid lipid-associated protein 2, chloroplastic OS=Brassica campestris GN=PAP2 PE=1 SV=1

 Score = 44.7 bits (104), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 1/64 (1%)

Query: 82  KDAKVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEPLKSD-LLNGKWEL 140
           ++ +VLK  L++++   DRG  A+ E +  +  +  +LE  NPT  P  +  LLNGKW L
Sbjct: 90  EETEVLKRSLVDSLYGTDRGLSASSETRAEIGDLITQLESKNPTPAPTDALFLLNGKWIL 149

Query: 141 IYTT 144
            YT+
Sbjct: 150 AYTS 153

May stabilize the accumulated carotenoid structures.

Brassica campestris (taxid: 3711)

>sp|Q9ZWQ8|PAP_CITUN Plastid-lipid-associated protein, chloroplastic OS=Citrus unshiu GN=PAP PE=2 SV=1

 Score = 44.7 bits (104), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 1/59 (1%)

Query: 87  LKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEPLKS-DLLNGKWELIYTT 144
           LK+ L+++    DRG  AT E +  + ++  +LE  NPT  P ++  LLN KW L+YT+
Sbjct: 99  LKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVYTS 157

Citrus unshiu (taxid: 55188)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	232
255575408	262	structural molecule, putative [Ricinus c	0.956	0.847	0.683	1e-79
224058986	247	predicted protein [Populus trichocarpa]	0.965	0.906	0.693	2e-79
357445555	364	hypothetical protein MTR_2g007300 [Medic	0.741	0.472	0.802	4e-78
351725241	242	uncharacterized protein LOC100306679 [Gl	0.935	0.896	0.666	1e-76
225448061	245	PREDICTED: probable plastid-lipid-associ	0.737	0.697	0.824	2e-76
298204585	228	unnamed protein product [Vitis vinifera]	0.737	0.75	0.824	2e-76
449449595	243	PREDICTED: probable plastid-lipid-associ	0.926	0.884	0.676	2e-76
147857589	1238	hypothetical protein VITISV_041584 [Viti	0.732	0.137	0.817	9e-76
356558503	245	PREDICTED: probable plastid-lipid-associ	0.866	0.820	0.682	2e-75
388521853	245	unknown [Lotus japonicus]	0.75	0.710	0.776	5e-74

>gi|255575408|ref|XP_002528606.1| structural molecule, putative [Ricinus communis] gi|223531951|gb|EEF33764.1| structural molecule, putative [Ricinus communis]

 Score =  301 bits (772), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 164/240 (68%), Positives = 185/240 (77%), Gaps = 18/240 (7%)

Query: 1   MALSSSSSSLCLHSATVLSGSQFSTPQLLFPPRVSFS----YFPTK-LNNNYQNN---RN 52
           MALSSSSS        +L+ S FST     PP    +    YF ++ +  NY        
Sbjct: 10  MALSSSSS------PAILTASHFSTN----PPNPKLTTTTFYFSSRFITANYSKTSFLNL 59

Query: 53  LSSSEYYHSSASQKWRASVSFFPAFLNKGKDAKVLKEELLEAIAPLDRGAEATPEDQQRV 112
            SS+   +S+   KWRA VSFFPAFL K KDA VLKEELL+AIA LDRGAEATPEDQQRV
Sbjct: 60  NSSNNDNNSTFDDKWRAKVSFFPAFLRKKKDANVLKEELLDAIASLDRGAEATPEDQQRV 119

Query: 113 EQIARKLEGVNPTKEPLKSDLLNGKWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLR 172
           ++IAR+LE VNPTK+PLKSDL+NGKWELIYTTSQSILQTQRP+FLRS  NYQAINVDTLR
Sbjct: 120 DEIARQLEAVNPTKQPLKSDLINGKWELIYTTSQSILQTQRPKFLRSKTNYQAINVDTLR 179

Query: 173 AQNMESGPFFNQVTADLTPLNSRKVAVQFDYFKIGGLIPVKAPNTARGELETTYLDEDLR 232
           AQNMES PFFNQVTADLTPLN++KVAV+FD FKI  LIPVKAP +ARGELETTYLDE+LR
Sbjct: 180 AQNMESWPFFNQVTADLTPLNAKKVAVKFDTFKIASLIPVKAPGSARGELETTYLDEELR 239

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224058986|ref|XP_002299674.1| predicted protein [Populus trichocarpa] gi|222846932|gb|EEE84479.1| predicted protein [Populus trichocarpa]

 Score =  301 bits (770), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 161/232 (69%), Positives = 178/232 (76%), Gaps = 8/232 (3%)

Query: 1   MALSSSSSSLCLHSATVLSGSQFSTPQLLFPPRVSFSYFPTKLNNNYQNNRNLSSSEYYH 60
           MALSSS      HS  VL+ SQFST         S  +F T   +N  +  NLSSS   +
Sbjct: 1   MALSSSP-----HSPAVLTASQFSTHSPFPKLTTSHFFFSTGKPSNQTSYFNLSSS---Y 52

Query: 61  SSASQKWRASVSFFPAFLNKGKDAKVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLE 120
           S+  + W A VSFFPAFL KGK AKVLKEELLEAI  LDRGA+A PEDQQRV++IARKLE
Sbjct: 53  STIDRSWSAKVSFFPAFLKKGKSAKVLKEELLEAIDSLDRGADAIPEDQQRVDEIARKLE 112

Query: 121 GVNPTKEPLKSDLLNGKWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGP 180
            VNPTKEPLKS LLNGKWEL+YTTSQSILQTQRP+ LRS  NYQAIN D LRAQNMES P
Sbjct: 113 AVNPTKEPLKSGLLNGKWELLYTTSQSILQTQRPKLLRSRTNYQAINADILRAQNMESWP 172

Query: 181 FFNQVTADLTPLNSRKVAVQFDYFKIGGLIPVKAPNTARGELETTYLDEDLR 232
           FFNQVTADLTPL+++KVAV+FD FKI GLIPVKAP  ARGELE TYLDE+LR
Sbjct: 173 FFNQVTADLTPLSAKKVAVKFDVFKILGLIPVKAPGRARGELEITYLDEELR 224

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357445555|ref|XP_003593055.1| hypothetical protein MTR_2g007300 [Medicago truncatula] gi|355482103|gb|AES63306.1| hypothetical protein MTR_2g007300 [Medicago truncatula]

 Score =  296 bits (758), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 138/172 (80%), Positives = 156/172 (90%)

Query: 61  SSASQKWRASVSFFPAFLNKGKDAKVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLE 120
           ++ SQKWR +VSFFPA   KGKDA  +KEELL+AIA LDRGA+ATPEDQQ V+QIAR+LE
Sbjct: 49  ATISQKWRTNVSFFPAIFKKGKDASTIKEELLDAIASLDRGADATPEDQQSVDQIARQLE 108

Query: 121 GVNPTKEPLKSDLLNGKWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGP 180
            VNPTK+PLKS LL+GKWELIYTTSQSILQT+RP+ LRSV NYQAIN DTLRAQNMESGP
Sbjct: 109 AVNPTKQPLKSSLLDGKWELIYTTSQSILQTKRPKLLRSVTNYQAINADTLRAQNMESGP 168

Query: 181 FFNQVTADLTPLNSRKVAVQFDYFKIGGLIPVKAPNTARGELETTYLDEDLR 232
           FFNQVTADLTP+N++KVAV+FD FKIGGLIPVKAP+TARGELE TYLDE+LR
Sbjct: 169 FFNQVTADLTPINAKKVAVKFDTFKIGGLIPVKAPDTARGELEITYLDEELR 220

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725241|ref|NP_001238621.1| uncharacterized protein LOC100306679 [Glycine max] gi|255629261|gb|ACU14975.1| unknown [Glycine max]

 Score =  291 bits (746), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 156/234 (66%), Positives = 176/234 (75%), Gaps = 17/234 (7%)

Query: 1   MALSSSSSSLCLHSATVLSGSQFSTPQL-LFPPRVSFSYFPTKLNNNYQNNRNLSSSEYY 59
           MALSS S    L SA     + +S P     P  +S SYFP         N   S+    
Sbjct: 1   MALSSPS----LFSAV---NATYSVPHFHALPLSLSSSYFPI--------NVRPSTHHVL 45

Query: 60  HSSASQKWRASVSFFPAFLN-KGKDAKVLKEELLEAIAPLDRGAEATPEDQQRVEQIARK 118
            S  + KWR  VSFF +FL  KGKDAK++KEELLEAIAPLDRGA+ATP+DQQ V+QIAR+
Sbjct: 46  VSDHNHKWRTKVSFFTSFLKQKGKDAKIIKEELLEAIAPLDRGADATPQDQQTVDQIARE 105

Query: 119 LEGVNPTKEPLKSDLLNGKWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMES 178
           LE V P KEPLKS+LL+GKWELIYTTSQSILQT+RP+ LRSV NYQAINVDTLRAQNMES
Sbjct: 106 LEAVTPIKEPLKSNLLDGKWELIYTTSQSILQTKRPKLLRSVANYQAINVDTLRAQNMES 165

Query: 179 GPFFNQVTADLTPLNSRKVAVQFDYFKIGGLIPVKAPNTARGELETTYLDEDLR 232
            PFFNQVTADLTPLN RKVAV+FD FKIGG+IP+KAP  ARGELE TYLDE+LR
Sbjct: 166 WPFFNQVTADLTPLNPRKVAVKFDTFKIGGIIPIKAPGRARGELEITYLDEELR 219

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448061|ref|XP_002275707.1| PREDICTED: probable plastid-lipid-associated protein 4, chloroplastic [Vitis vinifera]

 Score =  291 bits (744), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 141/171 (82%), Positives = 153/171 (89%)

Query: 62  SASQKWRASVSFFPAFLNKGKDAKVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEG 121
           S S+KWR  VSFFPAFL KGKDAK LKEELL+AIAPLDRGA+AT EDQQRV+QIA +LE 
Sbjct: 52  SPSKKWRVGVSFFPAFLKKGKDAKALKEELLDAIAPLDRGADATLEDQQRVDQIASELEA 111

Query: 122 VNPTKEPLKSDLLNGKWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGPF 181
           VN  KEPLKSDLLNGKWELIYTTSQSILQTQRP+FLRS+ NYQAINVDTLRAQNMES PF
Sbjct: 112 VNSIKEPLKSDLLNGKWELIYTTSQSILQTQRPKFLRSIANYQAINVDTLRAQNMESFPF 171

Query: 182 FNQVTADLTPLNSRKVAVQFDYFKIGGLIPVKAPNTARGELETTYLDEDLR 232
           FNQVTADLTPL ++KVAV+FD FKI GLIP+KAP  ARGELE TYLDE+LR
Sbjct: 172 FNQVTADLTPLTAKKVAVKFDSFKILGLIPIKAPGRARGELEITYLDEELR 222

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298204585|emb|CBI23860.3| unnamed protein product [Vitis vinifera]

 Score =  291 bits (744), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 141/171 (82%), Positives = 153/171 (89%)

Query: 62  SASQKWRASVSFFPAFLNKGKDAKVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEG 121
           S S+KWR  VSFFPAFL KGKDAK LKEELL+AIAPLDRGA+AT EDQQRV+QIA +LE 
Sbjct: 35  SPSKKWRVGVSFFPAFLKKGKDAKALKEELLDAIAPLDRGADATLEDQQRVDQIASELEA 94

Query: 122 VNPTKEPLKSDLLNGKWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGPF 181
           VN  KEPLKSDLLNGKWELIYTTSQSILQTQRP+FLRS+ NYQAINVDTLRAQNMES PF
Sbjct: 95  VNSIKEPLKSDLLNGKWELIYTTSQSILQTQRPKFLRSIANYQAINVDTLRAQNMESFPF 154

Query: 182 FNQVTADLTPLNSRKVAVQFDYFKIGGLIPVKAPNTARGELETTYLDEDLR 232
           FNQVTADLTPL ++KVAV+FD FKI GLIP+KAP  ARGELE TYLDE+LR
Sbjct: 155 FNQVTADLTPLTAKKVAVKFDSFKILGLIPIKAPGRARGELEITYLDEELR 205

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449595|ref|XP_004142550.1| PREDICTED: probable plastid-lipid-associated protein 4, chloroplastic-like [Cucumis sativus] gi|449479703|ref|XP_004155682.1| PREDICTED: probable plastid-lipid-associated protein 4, chloroplastic-like [Cucumis sativus]

 Score =  291 bits (744), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 153/226 (67%), Positives = 171/226 (75%), Gaps = 11/226 (4%)

Query: 9   SLCLHSATVLSGSQFSTPQLLFPPRVSFSYFPTKLNNNYQNNRNLSSSEYYHSSASQKWR 68
           ++ L S+T    ++   P    PPR      P+    N  +N NL       SS S KWR
Sbjct: 4   AVALSSSTATPTTKLWPPSTSQPPRFLLPIIPS----NPSSNTNL-----LTSSPSHKWR 54

Query: 69  ASVSFFPAFLNKGKDAKV--LKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTK 126
             +SFFPAFLNKGK   V  LK+ELL+AI PLDRGAEATPEDQ+ V+QI+RKLE VNPTK
Sbjct: 55  LRISFFPAFLNKGKGNNVTALKQELLQAIEPLDRGAEATPEDQEMVDQISRKLEAVNPTK 114

Query: 127 EPLKSDLLNGKWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGPFFNQVT 186
           EPLKSDLLNGKWELIYTTS+SILQT+RP+FLRS  NYQ INVD+LRAQNMES PFFNQVT
Sbjct: 115 EPLKSDLLNGKWELIYTTSRSILQTERPKFLRSKLNYQGINVDSLRAQNMESWPFFNQVT 174

Query: 187 ADLTPLNSRKVAVQFDYFKIGGLIPVKAPNTARGELETTYLDEDLR 232
           ADL PLNSRKVAVQFD FKI GLIPVKAP  ARGELE TYLDE+LR
Sbjct: 175 ADLKPLNSRKVAVQFDTFKILGLIPVKAPGRARGELEITYLDEELR 220

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147857589|emb|CAN80995.1| hypothetical protein VITISV_041584 [Vitis vinifera]

 Score =  288 bits (738), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 139/170 (81%), Positives = 151/170 (88%)

Query: 62  SASQKWRASVSFFPAFLNKGKDAKVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEG 121
           S S+KWR  VSFFPAFL KGKDAK LKEELL+AIAPLDRGA+AT EDQQ V+QIA +LE 
Sbjct: 52  SPSKKWRVGVSFFPAFLKKGKDAKALKEELLDAIAPLDRGADATLEDQQXVDQIASELEA 111

Query: 122 VNPTKEPLKSDLLNGKWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGPF 181
           VN  KEPLKSDLLNGKWELIYTTSQSILQTQRP+FLRS+ NYQAINVDTLRAQNMES PF
Sbjct: 112 VNSIKEPLKSDLLNGKWELIYTTSQSILQTQRPKFLRSIANYQAINVDTLRAQNMESFPF 171

Query: 182 FNQVTADLTPLNSRKVAVQFDYFKIGGLIPVKAPNTARGELETTYLDEDL 231
           FNQVTADLTPL ++KVAV+FD FKI GLIP+KAP  ARGELE TYLDE+L
Sbjct: 172 FNQVTADLTPLTAKKVAVKFDSFKILGLIPIKAPGRARGELEITYLDEEL 221

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356558503|ref|XP_003547545.1| PREDICTED: probable plastid-lipid-associated protein 4, chloroplastic-like [Glycine max]

 Score =  287 bits (735), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 146/214 (68%), Positives = 169/214 (78%), Gaps = 13/214 (6%)

Query: 24  STPQLLF-----PPRVSFSYFPTKLNNNYQNNRNLSSSEYYHSSASQKWRASVSFFPAFL 78
           S P   F     P  +S S+FP         N   S+  + H S + KWRA VSFF +FL
Sbjct: 17  SVPHFHFHFHAQPLSLSSSHFPI--------NIRPSTHHHVHVSHNHKWRAKVSFFTSFL 68

Query: 79  NKGKDAKVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEPLKSDLLNGKW 138
            KGKDAK++KEE+LEAIAPLDRGA+ATP+DQQ ++QIAR+LE V P KEPLK++LL+GKW
Sbjct: 69  KKGKDAKIIKEEMLEAIAPLDRGADATPQDQQTIDQIARELEAVTPIKEPLKTNLLDGKW 128

Query: 139 ELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGPFFNQVTADLTPLNSRKVA 198
           ELIYTTSQSILQT+RP+ LRSV NYQAINVDTLRAQNMES PFFNQVTADLTPLN RKVA
Sbjct: 129 ELIYTTSQSILQTKRPKLLRSVANYQAINVDTLRAQNMESWPFFNQVTADLTPLNPRKVA 188

Query: 199 VQFDYFKIGGLIPVKAPNTARGELETTYLDEDLR 232
           V+FD FKIGG+IP+KAP  ARGELE TYLDE+LR
Sbjct: 189 VKFDTFKIGGIIPIKAPGRARGELEITYLDEELR 222

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388521853|gb|AFK48988.1| unknown [Lotus japonicus]

 Score =  283 bits (723), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 139/179 (77%), Positives = 155/179 (86%), Gaps = 5/179 (2%)

Query: 59  YHSS----ASQKWRASVSFFPAFLN-KGKDAKVLKEELLEAIAPLDRGAEATPEDQQRVE 113
           YH+S     S+KWRA VSFFPAFLN K KDA  +K+ELL+AIAPLDRGA+AT EDQQ ++
Sbjct: 44  YHTSHSLAISEKWRAKVSFFPAFLNNKRKDASTIKQELLDAIAPLDRGADATLEDQQTID 103

Query: 114 QIARKLEGVNPTKEPLKSDLLNGKWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRA 173
           QIARKLE VNPTK PLKS+LL+GKWELIYTTSQSILQT+RP+ LRSV NYQAIN DTLRA
Sbjct: 104 QIARKLEAVNPTKNPLKSNLLDGKWELIYTTSQSILQTKRPKLLRSVTNYQAINADTLRA 163

Query: 174 QNMESGPFFNQVTADLTPLNSRKVAVQFDYFKIGGLIPVKAPNTARGELETTYLDEDLR 232
           QNMES PFFNQVTADLTP+N+RKVAV+FD FKI G IPVKAP TARG LE TYLDE+LR
Sbjct: 164 QNMESWPFFNQVTADLTPVNTRKVAVKFDTFKIAGFIPVKAPETARGSLEITYLDEELR 222

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	232
TAIR|locus:2092150	242	AT3G26070 [Arabidopsis thalian	0.711	0.681	0.672	2e-56
TAIR|locus:2092165	234	AT3G26080 [Arabidopsis thalian	0.702	0.696	0.646	5.6e-52
TAIR|locus:2178133	273	AT5G09820 [Arabidopsis thalian	0.443	0.377	0.302	9.9e-07
TAIR|locus:2132006	310	AT4G22240 [Arabidopsis thalian	0.474	0.354	0.285	1.5e-06
TAIR|locus:2147720	239	AT5G19940 [Arabidopsis thalian	0.689	0.669	0.301	3.5e-06
TAIR|locus:2136627	318	FIB "fibrillin" [Arabidopsis t	0.599	0.437	0.270	1.3e-05
UNIPROTKB|O99019	326	O99019 "Light-induced protein,	0.538	0.383	0.253	0.00025
UNIPROTKB|P80471	326	P80471 "Light-induced protein,	0.538	0.383	0.253	0.00025
TAIR|locus:2090890	284	FIB4 "fibrillin 4" [Arabidopsi	0.310	0.253	0.358	0.0004

TAIR|locus:2092150 AT3G26070 [Arabidopsis thaliana (taxid:3702)]

 Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
 Identities = 113/168 (67%), Positives = 139/168 (82%)

Query:    68 RASVSFFPAFLNKGKDA---KVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNP 124
             +A  SF PAFL +   A   K LK+ELLEAI PL+RGA A+P+DQ R++Q+ARK+E VNP
Sbjct:    52 QAIFSFPPAFLTRNGRAEKQKQLKQELLEAIEPLERGATASPDDQLRIDQLARKVEAVNP 111

Query:   125 TKEPLKSDLLNGKWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGPFFNQ 184
             TKEPLKSDL+NGKWELIYTTS SILQ ++PRFLRS+ NYQ+INVDTL+ QNME+ PF+N 
Sbjct:   112 TKEPLKSDLVNGKWELIYTTSASILQAKKPRFLRSITNYQSINVDTLKVQNMETWPFYNS 171

Query:   185 VTADLTPLNSRKVAVQFDYFKIGGLIPVKAPNTARGELETTYLDEDLR 232
             VT D+ PLNS+KVAV+   FKI G IP+KAP++ARGELE TY+DE+LR
Sbjct:   172 VTGDIKPLNSKKVAVKLQVFKILGFIPIKAPDSARGELEITYVDEELR 219

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IEA;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010287 "plastoglobule" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

TAIR|locus:2092165 AT3G26080 [Arabidopsis thaliana (taxid:3702)]

 Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
 Identities = 106/164 (64%), Positives = 130/164 (79%)

Query:    70 SVSFFPAFLNKGKDAKVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEPL 129
             +V  FP      +  K LK EL+EAI PL+RGA A+P+DQ  ++Q+ARK+E VNPTKEPL
Sbjct:    48 AVFSFPPRNGGAEKRKQLKHELVEAIEPLERGATASPDDQLLIDQLARKVEAVNPTKEPL 107

Query:   130 KSDLLNGKWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGPFFNQVTADL 189
             KSDL+NGKWELIYTTS +ILQ ++PRFLRS+ NYQ IN+DTL+ Q ME+ PF+N VT DL
Sbjct:   108 KSDLINGKWELIYTTSAAILQAKKPRFLRSLTNYQCINMDTLKVQRMETWPFYNSVTGDL 167

Query:   190 TPLNSRKVAVQFDYFKIGGLIPVKAPN-TARGELETTYLDEDLR 232
             TPLNS+ VAV+   FKI G IPVKAP+ TARGELE TY+DE+LR
Sbjct:   168 TPLNSKTVAVKLQVFKILGFIPVKAPDGTARGELEITYVDEELR 211

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IEA;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

TAIR|locus:2178133 AT5G09820 [Arabidopsis thaliana (taxid:3702)]

 Score = 121 (47.7 bits), Expect = 9.9e-07, Sum P(2) = 9.9e-07
 Identities = 33/109 (30%), Positives = 62/109 (56%)

Query:    87 LKEELLEAIAPLDRGAEATPEDQQ-RVEQIARKLEGVNPTKEPL-KSDLLNGKWELIYTT 144
             +KEEL EA+  ++RG      D++  +E + + LE  NPT EP  + D + G W+LIY+T
Sbjct:    86 IKEELYEALKGINRGIFGVKSDKKTEIEGLVKLLECRNPTPEPTGELDKIGGCWKLIYST 145

Query:   145 SQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGPFFNQVTADLTPLN 193
               ++L ++R +    +R++ ++  D L+  ++  G   + +  D+  LN
Sbjct:   146 I-TVLGSKRTKL--GLRDFVSLG-DLLQQIDIAQGKTVHVLKFDVRGLN 190

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IEA;IDA

TAIR|locus:2132006 AT4G22240 [Arabidopsis thaliana (taxid:3702)]

 Score = 115 (45.5 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
 Identities = 34/119 (28%), Positives = 60/119 (50%)

Query:    82 KDAKVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEPLKS-DLLNGKWEL 140
             ++ + LK  L++++   DRG  A+ E +  +  +  +LE  NPT  P ++  LLNGKW L
Sbjct:    81 EETERLKRSLVDSLYGTDRGLSASSETRAEIGDLITQLESKNPTPAPTEALFLLNGKWIL 140

Query:   141 IYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGPFFNQVTADLT-PLNSRKVA 198
              YT+  ++     P   R +     I VD + +Q ++S  F  Q +     PL +  ++
Sbjct:   141 AYTSFVNLF----PLLSRGI--VPLIKVDEI-SQTIDSDNFTVQNSVRFAGPLGTNSIS 192

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IEA;IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010287 "plastoglobule" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

TAIR|locus:2147720 AT5G19940 [Arabidopsis thaliana (taxid:3702)]

 Score = 124 (48.7 bits), Expect = 3.5e-06, P = 3.5e-06
 Identities = 53/176 (30%), Positives = 85/176 (48%)

Query:    69 ASVSFFPAFLNKGKDAKVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEP 128
             +SVS     L  G D  +    LL  +A  D G   +PE  + V Q+A +L+     KEP
Sbjct:    52 SSVSAPNVELRTGPDDLI--STLLSKVANSDGGVTLSPEQHKEVAQVAGELQKYC-VKEP 108

Query:   129 LKSDLLNGKWELIY----TTSQSILQTQRPR-FLRSVRNYQAINV-DTLRAQ-NMESGPF 181
             +K+ L+ G WE++Y    T+     ++   R F ++    QAI+  D +R + ++ +  F
Sbjct:   109 VKNPLIFGDWEVVYCSRPTSPGGGYRSVIGRLFFKTKEMIQAIDAPDIVRNKVSINAFGF 168

Query:   182 FN---QVTADLTPLNSRKVAVQFD--YFKIGGLIPVKAPNTARGELETTYLDEDLR 232
              +    +T  L  L+S  V V F+    K+G L   K    +  +L  TY+DE LR
Sbjct:   169 LDGDVSLTGKLKALDSEWVQVIFEPPEIKVGSL-EFKYGFESEVKLRITYVDEKLR 223

GO:0005198 "structural molecule activity" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IEA;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2136627 FIB "fibrillin" [Arabidopsis thaliana (taxid:3702)]

 Score = 122 (48.0 bits), Expect = 1.3e-05, P = 1.3e-05
 Identities = 40/148 (27%), Positives = 71/148 (47%)

Query:    69 ASVSFFPAFLNKGKDAKVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEP 128
             ++VS     +   ++ + LK  L +++   DRG   + + +  + ++  +LE  NPT  P
Sbjct:    76 STVSVADKAIESVEETERLKRSLADSLYGTDRGLSVSSDTRAEISELITQLESKNPTPAP 135

Query:   129 LKS-DLLNGKWELIYTTSQSI--LQTQRPRFLRSVRNY-QAINVDTLRAQNME--SGPFF 182
              ++  LLNGKW L YT+   +  L ++R   L  V    Q I+ D+   QN    +GPF 
Sbjct:   136 NEALFLLNGKWILAYTSFVGLFPLLSRRIEPLVKVDEISQTIDSDSFTVQNSVRFAGPFS 195

Query:   183 N---QVTADLTPLNSRKVAVQFDYFKIG 207
                    A     + ++V ++F+   IG
Sbjct:   196 TTSFSTNAKFEIRSPKRVQIKFEQGVIG 223

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IEA;IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0010287 "plastoglobule" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0010205 "photoinhibition" evidence=IMP

GO:0009409 "response to cold" evidence=IEP

GO:0010319 "stromule" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

UNIPROTKB|O99019 O99019 "Light-induced protein, chloroplastic" [Solanum demissum (taxid:50514)]

 Score = 112 (44.5 bits), Expect = 0.00025, P = 0.00025
 Identities = 34/134 (25%), Positives = 65/134 (48%)

Query:    83 DAKVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEPLKS-DLLNGKWELI 141
             + ++LK++L +++   +RG  A+ E +  + ++  +LE  NP   P ++  LLNGKW L 
Sbjct:    98 EIELLKKQLADSLYGTNRGLSASSETRAEIVELITQLESKNPNPAPTEALTLLNGKWILA 157

Query:   142 YTTSQSI---LQTQRPRFLRSVRNYQAINVDTLRAQN--MESGPFFN---QVTADLTPLN 193
             YT+   +   L       +R     Q I+ ++   QN  + +GP         A     +
Sbjct:   158 YTSFSGLFPLLSRGNLPLVRVEEISQTIDSESFTVQNSVVFAGPLATTSISTNAKFEVRS 217

Query:   194 SRKVAVQFDYFKIG 207
              ++V ++F+   IG
Sbjct:   218 PKRVQIKFEEGIIG 231

GO:0003674 "molecular_function" evidence=ND

GO:0006950 "response to stress" evidence=IEP

GO:0009535 "chloroplast thylakoid membrane" evidence=ISS

UNIPROTKB|P80471 P80471 "Light-induced protein, chloroplastic" [Solanum tuberosum (taxid:4113)]

 Score = 112 (44.5 bits), Expect = 0.00025, P = 0.00025
 Identities = 34/134 (25%), Positives = 65/134 (48%)

Query:    83 DAKVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEPLKS-DLLNGKWELI 141
             + ++LK++L +++   +RG  A+ E +  + ++  +LE  NP   P ++  LLNGKW L 
Sbjct:    98 EIELLKKQLADSLYGTNRGLSASSETRAEIVELITQLESKNPNPAPTEALTLLNGKWILA 157

Query:   142 YTTSQSI---LQTQRPRFLRSVRNYQAINVDTLRAQN--MESGPFFN---QVTADLTPLN 193
             YT+   +   L       +R     Q I+ ++   QN  + +GP         A     +
Sbjct:   158 YTSFSGLFPLLSRGNLPLVRVEEISQTIDSESFTVQNSVVFAGPLATTSISTNAKFEVRS 217

Query:   194 SRKVAVQFDYFKIG 207
              ++V ++F+   IG
Sbjct:   218 PKRVQIKFEEGIIG 231

GO:0003674 "molecular_function" evidence=ND

GO:0006950 "response to stress" evidence=IEP

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

TAIR|locus:2090890 FIB4 "fibrillin 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 100 (40.3 bits), Expect = 0.00040, Sum P(2) = 0.00040
 Identities = 28/78 (35%), Positives = 44/78 (56%)

Query:    75 PAFLNKGKDAK---VLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEPLKS 131
             P+    G D K   +LK +LL  ++ L+RG  A+ +D +R E  A++LE      + L  
Sbjct:    72 PSSSGSGGDDKQIALLKLKLLSVVSGLNRGLVASVDDLERAEVAAKELETAGGPVD-LTD 130

Query:   132 DL--LNGKWELIYTTSQS 147
             DL  L GKW L+Y+++ S
Sbjct:   131 DLDKLQGKWRLLYSSAFS 148

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IEA;IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010287 "plastoglobule" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009658 "chloroplast organization" evidence=IMP

GO:0010193 "response to ozone" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IMP

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LU85	PAP4_ARATH	No assigned EC number	0.5423	0.9267	0.8884	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	232
pfam04755	196	pfam04755, PAP_fibrillin, PAP_fibrillin	5e-35

>gnl|CDD|218245 pfam04755, PAP_fibrillin, PAP_fibrillin

 Score =  122 bits (309), Expect = 5e-35
 Identities = 61/181 (33%), Positives = 88/181 (48%), Gaps = 35/181 (19%)

Query: 87  LKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEPLKS-DLLNGKWELIYTTS 145
           LK +LL+AI   +RG  A+ +D+  +E    +LE +NPT  P +S DLLNGKW L+YTTS
Sbjct: 3   LKRKLLDAIYGTNRGLRASSDDRAEIESAVTQLEALNPTPAPTESLDLLNGKWRLLYTTS 62

Query: 146 QSI---LQTQRPRFLRSVRNYQAINVDTLRAQNME--SGPFFN---QVTADLTPLNSRKV 197
           + +   L   R   L+  + YQ I+V+ L   N    SGP       V A     + ++V
Sbjct: 63  KELLPLLARGRLPLLKVGQIYQTIDVNNLTVYNSVTFSGPLAEGSFSVRAKFEIRSPKRV 122

Query: 198 AVQFDYFKIGGLIPVKA--------------------------PNTARGELETTYLDEDL 231
            ++F+   +G    +K                            + A+G LETTYLDEDL
Sbjct: 123 QIRFERGVLGTPQLLKGSLTPLQDTASNIRGISSQLPLPFPLSGDRAKGWLETTYLDEDL 182

Query: 232 R 232
           R
Sbjct: 183 R 183

This family identifies a conserved region found in a number of plastid lipid-associated proteins (PAPs), and in a number of putative fibrillin proteins. Length = 196

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	232
PF04755	198	PAP_fibrillin: PAP_fibrillin; InterPro: IPR006843	100.0

>PF04755 PAP_fibrillin: PAP_fibrillin; InterPro: IPR006843 This family identifies a conserved domain found in a number of plastid lipid-associated proteins (PAPs) that are thought to form together with other plastoglobulins a coat on the surface of the lipoprotein particle

Probab=100.00  E-value=3.3e-35  Score=249.40  Aligned_cols=148  Identities=41%  Similarity=0.673  Sum_probs=128.5

Q ss_pred             HHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCC-CCCCeeEEEEEeccccccc---ccCCcceeee
Q 026862           85 KVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEPLKS-DLLNGKWELIYTTSQSILQ---TQRPRFLRSV  160 (232)
Q Consensus        85 ~~lK~~LL~~ia~t~RG~~as~~~r~~I~elI~~LEalnPt~~P~~s-~lL~G~W~LlYTTs~~~lg---~~~~p~~~~g  160 (232)
                      +++|++||+++++++||+.+++++|++|+++|++||++||+++|+++ ++|+|+|+|+|||+.++..   .+..+++.++
T Consensus         1 ~~~K~~Ll~~~~~~~rG~~~~~~~~~~i~~~v~~LE~~np~~~p~~s~~~L~G~W~Lvytt~~~~~~~l~~~~~~~~~~~   80 (198)
T PF04755_consen    1 QDLKQELLQAVAGTNRGLRASPEDREEIEELVEELEALNPTPDPADSLPLLDGRWELVYTTSPEIRSLLQRGRLPGVRVG   80 (198)
T ss_pred             ChHHHHHHHHHhccCCCccCCHHHHHHHHHHHHHHHHhCCCCCCcCCchhcCcEEEEEeecCCCcccccccccccccccc
Confidence            36999999999999999999999999999999999999999999998 9999999999999998763   3556678899


Q ss_pred             eeeEEEEcCCCeEEEeeec---CCc-c--eEEEEEEecCCceEEEEEeeeEEee------------------------ec
Q 026862          161 RNYQAINVDTLRAQNMESG---PFF-N--QVTADLTPLNSRKVAVQFDYFKIGG------------------------LI  210 (232)
Q Consensus       161 ~i~Q~ID~~~~rv~NvV~f---p~~-~--~V~A~~~~~s~~Rv~V~Fe~~~l~G------------------------~i  210 (232)
                      ++||+||.+++++.|+|++   |.. +  .+++.+++.+++|+.|+|+++.+..                        ..
T Consensus        81 ~v~Q~id~~~~~~~N~v~~~~~~~~~~~~~v~a~~~~~~~~rv~v~f~~~~l~~~~~l~~~l~~~~~~~~~v~~~~~~~~  160 (198)
T PF04755_consen   81 RVFQTIDADNGRVENVVELSGFPLLEGSVSVRASLEVRSPRRVEVTFERASLKPPSLLKGVLGPLKDALNNVPRGISDEL  160 (198)
T ss_pred             ceEEEEECCCceEEEEEEEeccCceEEEEEEEEEEEEccccEEEEEEEeeEEcccceeeccchhhhhhhhhccccccccc
Confidence            9999999999999999994   433 2  6789999999999999999987721                        01


Q ss_pred             c--ccCC-CCCceEEEEEeeCCCCC
Q 026862          211 P--VKAP-NTARGELETTYLDEDLR  232 (232)
Q Consensus       211 ~--v~~P-~~~~GwldiTYLDedLR  232 (232)
                      +  ++.| ..++|||||||||||||
T Consensus       161 ~~~~~~~~~~~~g~l~~tYLDedlR  185 (198)
T PF04755_consen  161 PVPLPLPGGSPKGWLDTTYLDEDLR  185 (198)
T ss_pred             ccccccCCCCCceEEEEEEECCCeE
Confidence            2  2233 47999999999999998

The coat may contain receptors for attachment to the thylakoid membrane as well as regulatory proteins that may function in the transfer of lipids to and from the thylakoid membranes.). This entry also represents a number of putative fibrillin proteins.; GO: 0005198 structural molecule activity, 0009507 chloroplast

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00