Citrus Sinensis ID: 026894
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 231 | ||||||
| 449486958 | 291 | PREDICTED: uncharacterized protein LOC10 | 0.878 | 0.697 | 0.602 | 3e-64 | |
| 449439309 | 303 | PREDICTED: uncharacterized protein LOC10 | 0.878 | 0.669 | 0.602 | 4e-64 | |
| 12322847 | 311 | unknown protein; 15342-13483 [Arabidopsi | 0.883 | 0.655 | 0.551 | 2e-63 | |
| 297829018 | 311 | predicted protein [Arabidopsis lyrata su | 0.896 | 0.665 | 0.543 | 3e-62 | |
| 18397089 | 300 | uncharacterized protein [Arabidopsis tha | 0.874 | 0.673 | 0.542 | 5e-62 | |
| 15240462 | 297 | uncharacterized protein [Arabidopsis tha | 0.874 | 0.680 | 0.559 | 3e-61 | |
| 297808805 | 297 | hypothetical protein ARALYDRAFT_489607 [ | 0.874 | 0.680 | 0.555 | 4e-61 | |
| 225451126 | 310 | PREDICTED: uncharacterized protein LOC10 | 0.896 | 0.667 | 0.557 | 4e-61 | |
| 255542446 | 308 | conserved hypothetical protein [Ricinus | 0.783 | 0.587 | 0.604 | 2e-60 | |
| 356533617 | 294 | PREDICTED: uncharacterized protein LOC10 | 0.844 | 0.663 | 0.591 | 2e-60 |
| >gi|449486958|ref|XP_004157454.1| PREDICTED: uncharacterized protein LOC101229667 [Cucumis sativus] | Back alignment and taxonomy information |
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Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 126/209 (60%), Positives = 157/209 (75%), Gaps = 6/209 (2%)
Query: 18 SFSVSLPPI----AELPFPVKSIGGNESVRQCHGVLYDAALVVPTVLFVLYLVVHAKKNL 73
S S +L PI ++L V+ + S CHG+ Y A LV P+VLF +YL + A +N+
Sbjct: 10 SSSDALSPIGSFSSQLNGDVRGLTAASS--GCHGMWYSALLVAPSVLFAIYLAISAIRNI 67
Query: 74 TKLCNGRSYIMISYYALLWLACVLNLAWCSLQGWQCSAGKEVAWNLLSLFTVAAVLYLEI 133
K GRS+IMISYYALLW+ +LNLAWCSLQ W+CS GK+ WNLLSLFT++ +L+LEI
Sbjct: 68 KKFFLGRSFIMISYYALLWITTLLNLAWCSLQEWECSPGKKFLWNLLSLFTLSGMLFLEI 127
Query: 134 SLMAFLLQESYASGLETLARTFIISGIIVGVDMLLKVIYVFGFGFPLFIDVDSTHRMKWG 193
SL+AFLL+ +Y+ G+E L FI+SG +VGVD+LLKVIYVFGFG PLFI V S+H KWG
Sbjct: 128 SLVAFLLKANYSGGMEALLHNFIVSGTLVGVDVLLKVIYVFGFGIPLFIGVGSSHWSKWG 187
Query: 194 FWIIHELLLTAVYGFILFVHFSKWREKLP 222
W IH+LLLTA YGFILFVHFSKWR+KLP
Sbjct: 188 VWTIHKLLLTAAYGFILFVHFSKWRDKLP 216
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Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449439309|ref|XP_004137428.1| PREDICTED: uncharacterized protein LOC101222221 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|12322847|gb|AAG51409.1|AC009465_9 unknown protein; 15342-13483 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|297829018|ref|XP_002882391.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297328231|gb|EFH58650.1| predicted protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|18397089|ref|NP_566244.1| uncharacterized protein [Arabidopsis thaliana] gi|15028251|gb|AAK76714.1| unknown protein [Arabidopsis thaliana] gi|332640654|gb|AEE74175.1| uncharacterized protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|15240462|ref|NP_198073.1| uncharacterized protein [Arabidopsis thaliana] gi|332006275|gb|AED93658.1| uncharacterized protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|297808805|ref|XP_002872286.1| hypothetical protein ARALYDRAFT_489607 [Arabidopsis lyrata subsp. lyrata] gi|297318123|gb|EFH48545.1| hypothetical protein ARALYDRAFT_489607 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|225451126|ref|XP_002269068.1| PREDICTED: uncharacterized protein LOC100264088 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|255542446|ref|XP_002512286.1| conserved hypothetical protein [Ricinus communis] gi|223548247|gb|EEF49738.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|356533617|ref|XP_003535358.1| PREDICTED: uncharacterized protein LOC100783991 [Glycine max] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 231 | ||||||
| TAIR|locus:2114835 | 300 | Cand2 "AT3G05010" [Arabidopsis | 0.865 | 0.666 | 0.547 | 2.1e-61 | |
| TAIR|locus:2181231 | 297 | Cand8 "AT5G27210" [Arabidopsis | 0.865 | 0.673 | 0.560 | 2.4e-60 | |
| WB|WBGene00008366 | 458 | tpra-1 [Caenorhabditis elegans | 0.683 | 0.344 | 0.236 | 8.5e-05 |
| TAIR|locus:2114835 Cand2 "AT3G05010" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
Identities = 115/210 (54%), Positives = 153/210 (72%)
Query: 23 LPPIAELPFPVKSIGGNES---------VRQCHGVLYDAALVVPTVLFVLYLVVHAKKNL 73
L IAE PF + + + + V +CHG L++ LV+ ++LFV YL AKK+L
Sbjct: 4 LSEIAESPFVISRLSPDSTATGGFIGGWVGKCHGFLHNTVLVLASILFVAYLAYEAKKSL 63
Query: 74 TKLCNGRSYIMISYYALLWLACVLNLAWCSLQGWQCSAGKEVAWNLLSLFTVAAVLYLEI 133
+KL N RSYIMI+YY LWL +LNLAWC LQ W+C+ GKEV WNLL+LFT + +L+LE+
Sbjct: 64 SKLSNRRSYIMIAYYGFLWLVSLLNLAWCCLQAWECTPGKEVIWNLLTLFTTSGMLFLEV 123
Query: 134 SLMAFLLQESYASGLETLARTFIISGIIVGVDMLLKVIYVFGFGFPLFIDVDS-THRMKW 192
SL+AFL Q +YASG E L RTF+ISG+++G+D+LLK IY+FGFG PLFID + H+ KW
Sbjct: 124 SLVAFLFQGNYASGAEALTRTFLISGLVIGLDLLLKAIYLFGFGVPLFIDNNEHIHKFKW 183
Query: 193 GFWIIHELLLTAVYGFILFVHFSKWREKLP 222
G W+IH+LLL +YG I F++ SKWRE+LP
Sbjct: 184 GLWVIHKLLLAGIYGMIFFMYNSKWRERLP 213
|
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| TAIR|locus:2181231 Cand8 "AT5G27210" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| WB|WBGene00008366 tpra-1 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 231 | |||
| pfam10160 | 261 | pfam10160, Tmemb_40, Predicted membrane protein | 2e-49 |
| >gnl|CDD|220606 pfam10160, Tmemb_40, Predicted membrane protein | Back alignment and domain information |
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Score = 162 bits (411), Expect = 2e-49
Identities = 74/190 (38%), Positives = 111/190 (58%), Gaps = 11/190 (5%)
Query: 40 ESVRQCHGVLYDAALVVPTVLFVLYLVVHAKKNLTKLCNGRSYIMISYYALLWLACVLNL 99
V +D L+ P +LF+++L KL GRS I+I++Y LLWL ++N+
Sbjct: 2 RWVGGSRVRYWDTVLLAPNLLFLVFLAWKLGSAFAKLRTGRSPIVIAFYGLLWLVALVNI 61
Query: 100 AWCSLQGWQCSAGK-----EVAWNLLSLFTVAAVLYLEISLMAFLLQESYASGLETLART 154
A C+L + + K +V WN+L F +L+LE+S++ F LQ + S ++ R
Sbjct: 62 ARCALSMTESTPDKAATVDQVLWNILRFF----LLFLELSVIIFGLQFGHLSSKSSITRV 117
Query: 155 FIISGIIVGVDMLLKVIYVFGF-GFPLFID-VDSTHRMKWGFWIIHELLLTAVYGFILFV 212
+I+G++ +D LL+VI FGF G LFID D WGFW+ H L+LT VYGFIL +
Sbjct: 118 LLITGLVSALDTLLQVILEFGFGGVSLFIDNFDIGGHGGWGFWVAHSLVLTLVYGFILIL 177
Query: 213 HFSKWREKLP 222
+ S+WRE+LP
Sbjct: 178 YHSRWRERLP 187
|
This is a region of 280 amino acids from a group of proteins conserved from plants to humans. It is predicted to be a membrane protein but its function is otherwise unknown. Length = 261 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 231 | |||
| PF10160 | 261 | Tmemb_40: Predicted membrane protein; InterPro: IP | 100.0 | |
| KOG4536 | 347 | consensus Predicted membrane protein [Function unk | 100.0 |
| >PF10160 Tmemb_40: Predicted membrane protein; InterPro: IPR018781 This entry represents 280 amino acid region found in a group of proteins conserved from plants to humans | Back alignment and domain information |
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Probab=100.00 E-value=4.2e-72 Score=499.90 Aligned_cols=187 Identities=38% Similarity=0.671 Sum_probs=182.8
Q ss_pred cccccccceeehhHHHhhHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHHHHHHHHHHHHHhhhceeecCC-hhhHHH
Q 026894 40 ESVRQCHGVLYDAALVVPTVLFVLYLVVHAKKNLTKLCNGRSYIMISYYALLWLACVLNLAWCSLQGWQCSAG-KEVAWN 118 (231)
Q Consensus 40 ~~~~~~~g~~wDv~LlvPn~LFllFL~~r~~~s~~KL~~trSpIf~tyY~llwvv~llnl~rC~vsm~~~t~~-~~~awn 118 (231)
+|+++|||++||+++++||++|++||++|+|||++|||+||||||+|||+++|+++++|++||++|||||+|+ ++++||
T Consensus 2 ~~~~~~~v~~~d~~l~vPn~lFllfL~~~~~~s~~KL~~~~SpI~~tyY~llw~v~llnl~rc~vsm~~~~~~~~~~~d~ 81 (261)
T PF10160_consen 2 RWIGGSRVRIWDVVLLVPNLLFLLFLAWRLRKSRRKLRHTRSPIFITYYALLWVVALLNLARCFVSMWVCSPGKGGIADK 81 (261)
T ss_pred cccccCceEehHHHHHHHHHHHHHHHHHhchHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHH
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999985 499999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHhhheeeecc-cceeecCC-CCCCcceehhh
Q 026894 119 LLSLFTVAAVLYLEISLMAFLLQESYASGLETLARTFIISGIIVGVDMLLKVIYVFGFG-FPLFIDVD-STHRMKWGFWI 196 (231)
Q Consensus 119 ILwL~tRFglL~lEvSVvvFll~g~~~s~~esL~Rtl~iS~lia~~d~llkaiy~f~~G-vplF~~~~-~~~hgkw~FW~ 196 (231)
++|+++|||||++|+||++||+||||.||+||||||+++|++|+++|++.|++|+|++| +|+|.+++ ..+||||+||+
T Consensus 82 ~lW~ilrfflL~lEvSvvvFgL~fghlds~~Si~r~l~iT~~is~~~s~~Q~ilef~~~d~~l~~~~~~~~~hgg~~fW~ 161 (261)
T PF10160_consen 82 VLWNILRFFLLSLEVSVVVFGLQFGHLDSRSSIKRTLLITGLISLADSLTQAILEFGFGDVPLFIENFDLFGHGGWGFWF 161 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHheeecCcccccCCCCCcCCcCCeehHH
Confidence 99999999999999999999999999999999999999999999999999999999999 89998766 78899999999
Q ss_pred HHHHHHHHHHHHHHHhcccccccccCCCCc
Q 026894 197 IHELLLTAVYGFILFVHFSKWREKLPCEYI 226 (231)
Q Consensus 197 isslvf~~VY~~Il~LP~T~wReRLParpS 226 (231)
+||++|++||++|++||++|||+|||+|||
T Consensus 162 ~~s~~f~~vY~~I~~L~~~r~r~~LPar~S 191 (261)
T PF10160_consen 162 ISSLVFALVYGFILILTPLRWRDRLPARPS 191 (261)
T ss_pred HHHHHHHHHHHHHHHHHhccccccCCCCcc
Confidence 999999999999999999999999999997
|
These are predicted to be membrane proteins, but apart from that their function is unknown. |
| >KOG4536 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
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Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00