Citrus Sinensis ID: 026922

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-
Protein Sequence
MASCFRGGSGISSISSLPSLPHRTRLSVLPVKCLSSRQSRDSDSDSDLRTTPSPSSTSGFSPYGWCAGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKVCFLCQNFSHFIADSLLSVDVVESINYHYRLSFV
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccEEcccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHccccHHHHccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHccEEEEEHHHHHHEEEEEccc
Coil and Loop (DISEMBL)
mascfrggsgississlpslphrtrlsvlpvkclssrqsrdsdsdsdlrttpspsstsgfspygwcagiggvgfLETTYLSYLKltnsdafcpiggascgdvlnsdyavvfgvplpfIGMFAYGLVAVLGLLLArksfpigineSYGRLILLGSSTSMAAASAYFLYILSTnfsgatcsYCLTSALLSFSLFFISLKVCFLCQNFshfiadsllsvdVVESINYHYRLSFV
Flexible Loop (DISEMBL)
mascfrggsgississlpslphrtrlsvlpvkclssrqsrdsdsdsdlrttpspsstsgfspygWCAGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKVCFLCQNFSHFIADSLLSVDVVESINYHYRLSFV
Low Complexity Region (SEG)
MASCFRGgsgississlpslpHRTRLSVLPVKCLssrqsrdsdsdsdlrttpspsstsgfspYGWCAGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFAYglvavlglllaRKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTsallsfslffislKVCFLCQNFSHFIADSLLSVDVVESINYHYRLSFV
Disordered region (IsUnstruct)
***********************************************************FSPYGWCAGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKVCFLCQNFSHFIADSLLSVDVVESINYHYRLS**
Disordered Region (DISOPRED)
***********************************************************FSPYGWCAGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKVCFLCQNFSHFIADSLLSVDVVESINYHYRLSFV
Disordered Region (DISEMBL)
**********ISSISSLPSLPHRTRLSVLPVKC*************************GFSPYGWCAGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKVCFLCQNFSHFIADSLLSVDVVESINYHYRLSFV
Disordered Region (DISPRO)
**********************************************************GFSPYGWCAGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKVCFLCQNFSHFIADSLLSVDVVESINYHYRLSFV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHoooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASCFRGGSGISSISSLPSLPHRTRLSVLPVKCLSSRQSRDSDSDSDLRTTPSPSSTSGFSPYGWCAGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKVCFLCQNFSHFIADSLLSVDVVESINYHYRLSFV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	231
350537081	243	anti-PCD protein-like [Solanum lycopersi	0.800	0.761	0.605	2e-54
359497224	298	PREDICTED: uncharacterized protein LOC10	0.575	0.446	0.789	1e-53
296088207	295	unnamed protein product [Vitis vinifera]	0.575	0.450	0.789	2e-53
224133580	329	predicted protein [Populus trichocarpa]	0.705	0.495	0.666	3e-53
147782976	418	hypothetical protein VITISV_010788 [Viti	0.575	0.318	0.781	3e-53
255579785	322	conserved hypothetical protein [Ricinus	0.705	0.506	0.682	2e-52
449434454	405	PREDICTED: uncharacterized protein LOC10	0.584	0.333	0.733	2e-49
449491279	380	PREDICTED: uncharacterized LOC101218748	0.584	0.355	0.733	3e-49
212722034	373	uncharacterized protein LOC100193951 pre	0.774	0.479	0.517	2e-41
359806252	349	uncharacterized protein LOC100817843 [Gl	0.839	0.555	0.495	4e-41

>gi|350537081|ref|NP_001234279.1| anti-PCD protein-like [Solanum lycopersicum] gi|76363955|gb|ABA41597.1| putative anti-PCD protein [Solanum lycopersicum]

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 115/190 (60%), Positives = 145/190 (76%), Gaps = 5/190 (2%)

Query: 12  SSISSLPSLPHRT--RLSVLPVKCLSSRQSRDSDSDSDLRTT-PSPSSTSGFSPYGWCAG 68
           +SISSL  L   +  RL +L V C SSRQ  D++++S+ +   P   + +G S Y WCA 
Sbjct: 25  NSISSLVQLKRDSVRRLLLLRVNC-SSRQVGDAETESESKVVLPDTPADTGISAYNWCAA 83

Query: 69  IGGVGFLETTYLSYLKLTNSDAFCPIG-GASCGDVLNSDYAVVFGVPLPFIGMFAYGLVA 127
           +GG+GFLET+YL++LKLTNS AFCP+G GASCGD+LNS Y+ VFGVPLP IGM AYG+VA
Sbjct: 84  LGGIGFLETSYLTFLKLTNSAAFCPVGDGASCGDILNSSYSAVFGVPLPLIGMVAYGVVA 143

Query: 128 VLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALL 187
           +LG+ L +KS P+G  E+ GRL+LLG++TSMAAASAYFLYILST F+G  C YCL S LL
Sbjct: 144 ILGIRLGQKSRPLGTGEANGRLVLLGTTTSMAAASAYFLYILSTKFTGEFCPYCLASVLL 203

Query: 188 SFSLFFISLK 197
           SFSLF  S+K
Sbjct: 204 SFSLFISSMK 213

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359497224|ref|XP_002271041.2| PREDICTED: uncharacterized protein LOC100264333 [Vitis vinifera]

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 105/133 (78%), Positives = 117/133 (87%)

Query: 65  WCAGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFAYG 124
           WCAG+GG+GFLETTYL+YLKLTNSDAFCPIGG +C DVLNSDYA VFGVPLP IGM AYG
Sbjct: 72  WCAGLGGLGFLETTYLTYLKLTNSDAFCPIGGGTCSDVLNSDYAAVFGVPLPLIGMAAYG 131

Query: 125 LVAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTS 184
           LV +LGL LA K+ P GI E+ GRL+LLG++TSM+AASAYFLYILST F GA+CSYCL S
Sbjct: 132 LVTILGLQLAGKNVPFGIGETNGRLLLLGTTTSMSAASAYFLYILSTQFPGASCSYCLVS 191

Query: 185 ALLSFSLFFISLK 197
           ALLSFSLFF SLK
Sbjct: 192 ALLSFSLFFTSLK 204

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088207|emb|CBI35722.3| unnamed protein product [Vitis vinifera]

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 105/133 (78%), Positives = 117/133 (87%)

Query: 65  WCAGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFAYG 124
           WCAG+GG+GFLETTYL+YLKLTNSDAFCPIGG +C DVLNSDYA VFGVPLP IGM AYG
Sbjct: 72  WCAGLGGLGFLETTYLTYLKLTNSDAFCPIGGGTCSDVLNSDYAAVFGVPLPLIGMAAYG 131

Query: 125 LVAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTS 184
           LV +LGL LA K+ P GI E+ GRL+LLG++TSM+AASAYFLYILST F GA+CSYCL S
Sbjct: 132 LVTILGLQLAGKNVPFGIGETNGRLLLLGTTTSMSAASAYFLYILSTQFPGASCSYCLVS 191

Query: 185 ALLSFSLFFISLK 197
           ALLSFSLFF SLK
Sbjct: 192 ALLSFSLFFTSLK 204

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133580|ref|XP_002327630.1| predicted protein [Populus trichocarpa] gi|222836715|gb|EEE75108.1| predicted protein [Populus trichocarpa]

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 110/165 (66%), Positives = 128/165 (77%), Gaps = 2/165 (1%)

Query: 63  YGWCAGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFA 122
           Y WCAG+GGVGFLET YL++LKLTNSDAFCPIGG +CGDVL+SDYAVVFGVPLP IGM +
Sbjct: 36  YNWCAGLGGVGFLETAYLTFLKLTNSDAFCPIGGGNCGDVLSSDYAVVFGVPLPLIGMIS 95

Query: 123 YGLVAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCL 182
           YGLVA LGL  + K FP GI ES GRL+LLG +TSMA AS YFLYILST FSG +C+YCL
Sbjct: 96  YGLVAALGLQWSGKKFPFGIEESNGRLLLLGCTTSMAVASGYFLYILSTKFSGTSCTYCL 155

Query: 183 TSALLSFSLFFISLKVCFLCQNFSHFIADSL-LSVDVVESINYHY 226
            SA LSFSLFFI+LK  F  +    F+   L ++  V+ S+N  Y
Sbjct: 156 LSAFLSFSLFFITLKD-FGLEEIQKFLGLQLCIASVVIFSLNTSY 199

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147782976|emb|CAN72958.1| hypothetical protein VITISV_010788 [Vitis vinifera]

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 104/133 (78%), Positives = 116/133 (87%)

Query: 65  WCAGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFAYG 124
           WCAG+GG+GFLETTYL+YLKLTNSDAFCPIGG +C DVLNSDYA VFGVPLP IGM AYG
Sbjct: 129 WCAGLGGLGFLETTYLTYLKLTNSDAFCPIGGGTCSDVLNSDYAAVFGVPLPLIGMAAYG 188

Query: 125 LVAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTS 184
           LV +L L LA K+ P GI E+ GRL+LLG++TSM+AASAYFLYILST F GA+CSYCL S
Sbjct: 189 LVTILSLQLAGKNVPFGIGETNGRLLLLGTTTSMSAASAYFLYILSTQFPGASCSYCLVS 248

Query: 185 ALLSFSLFFISLK 197
           ALLSFSLFF SLK
Sbjct: 249 ALLSFSLFFTSLK 261

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579785|ref|XP_002530730.1| conserved hypothetical protein [Ricinus communis] gi|223529694|gb|EEF31636.1| conserved hypothetical protein [Ricinus communis]

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 112/164 (68%), Positives = 128/164 (78%), Gaps = 1/164 (0%)

Query: 34  LSSRQSRDSDSDSDLRTTPSPSSTSGFSPYGWCAGIGGVGFLETTYLSYLKLTNSDAFCP 93
           +SS  + D++S+    TT S  S    S   WCA +G +GFLET YL+YLKLTNSDAFCP
Sbjct: 1   MSSGPTSDTESEPK-TTTSSSFSNWSISTNSWCAALGSIGFLETAYLTYLKLTNSDAFCP 59

Query: 94  IGGASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLLLARKSFPIGINESYGRLILLG 153
           IGG SCGDVLNSDYAVVFGVPLP IG+ AYGLVA LGLLL  K+ P GI E+ GRLILL 
Sbjct: 60  IGGGSCGDVLNSDYAVVFGVPLPVIGIVAYGLVASLGLLLPGKNLPFGIGEANGRLILLA 119

Query: 154 SSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLK 197
           S+TSMAAAS YFLYILST FSG +CSYC+ SA LSF+LFFI+LK
Sbjct: 120 STTSMAAASGYFLYILSTKFSGVSCSYCIFSAFLSFTLFFITLK 163

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434454|ref|XP_004135011.1| PREDICTED: uncharacterized protein LOC101218748 [Cucumis sativus]

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 99/135 (73%), Positives = 111/135 (82%)

Query: 63  YGWCAGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFA 122
           Y  CA +GG+GF+ET YLSYLKLT+S AFCPIGG  C +VLNSDYA VFGVPLP IGM A
Sbjct: 116 YTLCAALGGIGFVETAYLSYLKLTDSAAFCPIGGGGCDNVLNSDYAAVFGVPLPLIGMVA 175

Query: 123 YGLVAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCL 182
           YGLV  + L LA K  P GI+ES GRL+LLG++TSMAAASAYFLYIL+T FSG TCSYCL
Sbjct: 176 YGLVGAVSLQLAAKKLPFGIDESGGRLVLLGTTTSMAAASAYFLYILNTQFSGVTCSYCL 235

Query: 183 TSALLSFSLFFISLK 197
            SALLSFSLFF +LK
Sbjct: 236 VSALLSFSLFFATLK 250

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449491279|ref|XP_004158848.1| PREDICTED: uncharacterized LOC101218748 [Cucumis sativus]

 Score =  200 bits (509), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 99/135 (73%), Positives = 111/135 (82%)

Query: 63  YGWCAGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFA 122
           Y  CA +GG+GF+ET YLSYLKLT+S AFCPIGG  C +VLNSDYA VFGVPLP IGM A
Sbjct: 91  YTLCAALGGIGFVETAYLSYLKLTDSAAFCPIGGGGCDNVLNSDYAAVFGVPLPLIGMVA 150

Query: 123 YGLVAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCL 182
           YGLV  + L LA K  P GI+ES GRL+LLG++TSMAAASAYFLYIL+T FSG TCSYCL
Sbjct: 151 YGLVGAVSLQLAAKKLPFGIDESGGRLVLLGTTTSMAAASAYFLYILNTQFSGVTCSYCL 210

Query: 183 TSALLSFSLFFISLK 197
            SALLSFSLFF +LK
Sbjct: 211 VSALLSFSLFFATLK 225

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|212722034|ref|NP_001132492.1| uncharacterized protein LOC100193951 precursor [Zea mays] gi|194694528|gb|ACF81348.1| unknown [Zea mays]

 Score =  174 bits (442), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 103/199 (51%), Positives = 120/199 (60%), Gaps = 20/199 (10%)

Query: 19  SLPHRTRLSVLPVKCLSSRQSR--------DSDSDS------------DLRTTPSPSSTS 58
           SLP  TR++V      SSR  R        DS S              D      PSS  
Sbjct: 11  SLPSLTRVAVASTPSASSRIKRATQFRCCADSSSQEQEISGAPPAPPLDKSARSPPSSLL 70

Query: 59  GFSPYGWCAGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCGDVLNSDYAVVFGVPLPFI 118
           G S   W AG+ G+GFLET YL+YLKLT S+AFCPI GA CGDVL+SDY+VVFG+PLP +
Sbjct: 71  GISTSTWSAGVAGLGFLETGYLTYLKLTGSEAFCPITGAGCGDVLDSDYSVVFGIPLPIV 130

Query: 119 GMFAYGLVAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATC 178
           G+ AYGLV  L L    K    G ++   RLILL  +TSMA AS YFLYILST F G +C
Sbjct: 131 GLVAYGLVTALSLQKNGKDLLQGSDDLDVRLILLLVATSMATASVYFLYILSTKFIGVSC 190

Query: 179 SYCLTSALLSFSLFFISLK 197
           SYCL SA LSF+L FI +K
Sbjct: 191 SYCLLSAFLSFTLLFIRVK 209

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806252|ref|NP_001241213.1| uncharacterized protein LOC100817843 [Glycine max] gi|255644534|gb|ACU22770.1| unknown [Glycine max]

 Score =  174 bits (440), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 108/218 (49%), Positives = 141/218 (64%), Gaps = 24/218 (11%)

Query: 13  SISSLPSLPHRT--RLSVLP-VKCLSSRQSRDSDSDSDLRTTPSPSSTSGFSPYGWC--- 66
           SI   P   HR+  R+ +LP +KC          S  +  T P P       P+ W    
Sbjct: 19  SIGGAPIRHHRSPNRIGLLPPLKC----------SSLEPETAPPP-------PFDWTHKL 61

Query: 67  -AGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFAYGL 125
            AG+ GVGFLET+YL+YLKLT +DAFCP+GG +C  +L+SDYA+VFG+PLP IGM AYGL
Sbjct: 62  IAGVAGVGFLETSYLTYLKLTGADAFCPVGGGTCSKILDSDYALVFGIPLPLIGMAAYGL 121

Query: 126 VAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSA 185
           VA LG+ LA K+F  GI +     +LLG++TSMAAASAYFLYIL+T FS ++CSYCL SA
Sbjct: 122 VAALGVQLASKNFRFGIEKPTAEAVLLGATTSMAAASAYFLYILTTRFSDSSCSYCLLSA 181

Query: 186 LLSFSLFFISLKVCFLCQNFSHFIADSLLSVDVVESIN 223
            LSF+LFF++LK   L +         L++  V+ S+N
Sbjct: 182 FLSFTLFFVTLKDIGLQEVSKQLGLQLLVASLVILSLN 219

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	231
TAIR|locus:2128028	376	LTO1 "Lumen Thiol Oxidoreducta	0.870	0.534	0.410	1.1e-37

TAIR|locus:2128028 LTO1 "Lumen Thiol Oxidoreductase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
 Identities = 85/207 (41%), Positives = 105/207 (50%)

Query:    25 RLSVLPVKCLXXX----XXXXXXXXXXXXXXXXXXXXXXXXXYGWCAGIGGVGFLETTYL 80
             R   +P+KC                                 Y W  GIGG+G L+T YL
Sbjct:    38 RFPAIPIKCSSSEPENGEDSAPSLSSSSSSSTSEVSTSNSSTYNWYTGIGGIGMLDTAYL 97

Query:    81 SYLKLTNSDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFAYXXXXXXXXXXXRKSFPI 140
             +YLK+T SDAFCPIGG +CGDVLNSDYAVVFGVPLP IG   Y             + P 
Sbjct:    98 TYLKVTGSDAFCPIGGGTCGDVLNSDYAVVFGVPLPVIGFVMYGVVTALSAELGEGNLPF 157

Query:   141 GINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTXXXXXXXXXXXXXKVCF 200
             GI++S GR  L G +T+MA+ASAYFLYILST  SG++C YCL              K   
Sbjct:   158 GISKSNGRFALFGITTAMASASAYFLYILSTKLSGSSCLYCLVSAFLSFSLFFLSVKDVK 217

Query:   201 LCQNFSHFIADSL-LSVDVVESINYHY 226
             L Q     +   + L++ VV S+   Y
Sbjct:   218 L-QEIQQVVGLQICLAIIVVASLTASY 243


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.328   0.141   0.451    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      231       165   0.00093  107 3  11 22  0.43    31
                                                     30  0.45    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  581 (62 KB)
  Total size of DFA:  143 KB (2087 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.60u 0.11s 11.71t   Elapsed:  00:00:00
  Total cpu time:  11.60u 0.11s 11.71t   Elapsed:  00:00:00
  Start:  Thu May  9 13:46:42 2013   End:  Thu May  9 13:46:42 2013

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0003955 "NAD(P)H dehydrogenase (quinone) activity" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0010207 "photosystem II assembly" evidence=RCA;IMP

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019760 "glucosinolate metabolic process" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	1.1.4.1	LOW CONFIDENCE prediction!
3rd Layer	1.1.4	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00013148001	SubName- Full=Chromosome chr4 scaffold_443, whole genome shotgun sequence; (342 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00017862001	SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (127 aa)			•	•					0.458
	GSVIVG00038180001	SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (279 aa)			•	•					0.456
	GSVIVG00013467001	SubName- Full=Chromosome undetermined scaffold_484, whole genome shotgun sequence; (332 aa)			•	•	•				0.444
	GSVIVG00014701001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (331 aa)			•	•	•				0.442
	GSVIVG00028771001	SubName- Full=Chromosome chr13 scaffold_45, whole genome shotgun sequence; (378 aa)			•	•					0.415

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	231
cd12916	133	cd12916, VKOR_1, Vitamin K epoxide reductase famil	4e-35
smart00756	142	smart00756, VKc, Family of likely enzymes that inc	7e-24
pfam07884	138	pfam07884, VKOR, Vitamin K epoxide reductase famil	7e-21
COG4243	156	COG4243, COG4243, Predicted membrane protein [Func	4e-17
cd10546	126	cd10546, VKOR, Vitamin K epoxide reductase (VKOR)	5e-11
cd12922	133	cd12922, VKOR_5, Vitamin K epoxide reductase famil	2e-08
cd12920	134	cd12920, VKOR_3, Vitamin K epoxide reductase famil	1e-06
PRK14889	143	PRK14889, PRK14889, VKOR family protein; Provision	9e-06
cd12918	126	cd12918, VKOR_arc, Vitamin K epoxide reductase fam	2e-05
cd12917	140	cd12917, VKOR_euk, Vitamin K epoxide reductase fam	0.003

>gnl|CDD|240599 cd12916, VKOR_1, Vitamin K epoxide reductase family in bacteria and plants

 Score =  121 bits (305), Expect = 4e-35
 Identities = 57/135 (42%), Positives = 75/135 (55%), Gaps = 4/135 (2%)

Query: 62  PYGWCAGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMF 121
                AG+  +G LET YL+Y+KLT S A CP GG  C  VLNS YA + G+PL   G  
Sbjct: 1   SRRLIAGLALIGLLETAYLTYVKLTGSSAVCPGGG-GCDTVLNSPYATLLGIPLSLFGFL 59

Query: 122 AYGLVAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYC 181
           AY  + VL +L           E +  L+L G +T+    SAY  Y+L+    GA C YC
Sbjct: 60  AYLAILVLAVLPLLLKSE--KLERWTWLLLFGLATAGVVFSAYLTYLLAF-VIGAFCPYC 116

Query: 182 LTSALLSFSLFFISL 196
           LTSA+LS  LF +++
Sbjct: 117 LTSAVLSTLLFLLTI 131

This family includes vitamin K epoxide reductase (VKOR) present in bacteria and plant. VKOR (also named VKORC1) is an integral membrane protein that catalyzes the reduction of vitamin K 2,3-epoxide and vitamin K to vitamin K hydroquinone, an essential co-factor subsequently used in the gamma-carboxylation of glutamic acid residues in blood coagulation enzymes. All homologs of VKOR contain an active site CXXC motif, which is switched between reduced and disulfide-bonded states during the reaction cycle. In some plant and bacterial homologs, the VKOR domain is fused with domains of the thioredoxin family of oxidoreductases which may function as redox partners in initiating the reduction cascade. Length = 133

>gnl|CDD|214805 smart00756, VKc, Family of likely enzymes that includes the catalytic subunit of vitamin K epoxide reductase

 Score = 92.4 bits (230), Expect = 7e-24
 Identities = 47/142 (33%), Positives = 67/142 (47%), Gaps = 11/142 (7%)

Query: 61  SPYGWCAGIGGVGFLETTYLSYLKLTNS-----DAFCPIGGA-SCGDVLNSDYAVVFGVP 114
                   +G +G L + YL+Y KLT        A C I    SCG VL+S YA +FG+P
Sbjct: 3   WTRWILLILGLIGLLASLYLTYEKLTLLEDPDYVASCDINPVVSCGKVLSSPYASIFGIP 62

Query: 115 LPFIGMFAYGLVAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFS 174
           L  +G+ AY +V  L +L             +   +L   S + A  S Y +Y+L     
Sbjct: 63  LSLLGIAAYLVVLALAVLG----LLGVTLPRWTWRLLFLGSLAGAVFSVYLIYLLVFVI- 117

Query: 175 GATCSYCLTSALLSFSLFFISL 196
            A C YC+ SA++S SLF +  
Sbjct: 118 KALCLYCILSAVVSISLFILVT 139

Bacterial homologues are fused to members of the thioredoxin family of oxidoreductases. Length = 142

>gnl|CDD|149126 pfam07884, VKOR, Vitamin K epoxide reductase family

 Score = 84.7 bits (210), Expect = 7e-21
 Identities = 44/138 (31%), Positives = 63/138 (45%), Gaps = 10/138 (7%)

Query: 65  WCAGIGGVGFLETTYLSYLKLTNS----DAFCPIGGA-SCGDVLNSDYAVVFGVPLPFIG 119
               +G +G L + YL+  K         A C I    SC  VLNS +A +FG+P   +G
Sbjct: 4   IILILGLIGLLASLYLTLEKYGLLEDPYRASCDINPVVSCSKVLNSPWATIFGIPNSLLG 63

Query: 120 MFAYGLVAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCS 179
           + AY +V +LG+L         ++      + LG S      S Y +YI      GA C 
Sbjct: 64  ILAYLVVLLLGVLGLAGVT---LSRWTWLGLFLG-SLVGVVFSVYLIYISVFVI-GALCL 118

Query: 180 YCLTSALLSFSLFFISLK 197
           YC+ SA +S  LF +S  
Sbjct: 119 YCILSAAVSIVLFILSTI 136

Vitamin K epoxide reductase (VKOR) recycles reduced vitamin K, which is used subsequently as a co-factor in the gamma-carboxylation of glutamic acid residues in blood coagulation enzymes. VKORC1 is a member of a large family of predicted enzymes that are present in vertebrates, Drosophila, plants, bacteria and archaea. Four cysteine residues and one residue, which is either serine or threonine, are identified as likely active-site residues. In some plant and bacterial homologues the VKORC1 homologous domain is fused with domains of the thioredoxin family of oxidoreductases. Length = 138

>gnl|CDD|226694 COG4243, COG4243, Predicted membrane protein [Function unknown]

 Score = 75.2 bits (185), Expect = 4e-17
 Identities = 36/133 (27%), Positives = 51/133 (38%), Gaps = 9/133 (6%)

Query: 67  AGIGGVGFLETTYLSYLKLTNSDAFCPI---GGASCGDVLNSDYAVVFGVPLPFIGMFAY 123
             IGG+  L         L      C     G  SC  VL+S YA + G+PL  +G+  +
Sbjct: 19  GVIGGLLSLSLMAEKLRSLLGGGYACSCDANGIVSCSSVLSSPYATILGIPLSLLGIAYF 78

Query: 124 GLVAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLT 183
             V +  LL                 +L+G S   +A   Y +Y L     GA C YC  
Sbjct: 79  TAVLIAALLGVAGVLE----RWTWIGLLVG-SLVGSAFVPYLIY-LELFVIGALCLYCTV 132

Query: 184 SALLSFSLFFISL 196
           + L    LF ++ 
Sbjct: 133 AHLSILLLFVLAT 145

Length = 156

>gnl|CDD|240598 cd10546, VKOR, Vitamin K epoxide reductase (VKOR) family

 Score = 58.2 bits (141), Expect = 5e-11
 Identities = 36/127 (28%), Positives = 56/127 (44%), Gaps = 10/127 (7%)

Query: 69  IGGVGFLETTYLSYLKLTNSD-AFCPIGGA-SCGDVLNSDYAVVFGVPLPFIGMFAYGLV 126
           +  +G L + YL+Y +LT    A C  G + SC  VL S ++ +FGVPL  +G   Y +V
Sbjct: 6   LAAIGLLVSLYLTYYELTEGAVAGCDAGPSSSCDLVLTSRWSRIFGVPLSLLGALYYLVV 65

Query: 127 AVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSAL 186
             L L                   L  ++ +   A+A+ +Y+      GA C YCL +  
Sbjct: 66  LGLLLS-------PPAGARLRWTALAAATFAGLGAAAWLIYLQLF-VLGAFCPYCLVAHA 117

Query: 187 LSFSLFF 193
              +L  
Sbjct: 118 AGLALLA 124

VKOR (also named VKORC1) is an integral membrane protein that catalyzes the reduction of vitamin K 2,3-epoxide and vitamin K to vitamin K hydroquinone, an essential co-factor subsequently used in the gamma-carboxylation of glutamic acid residues in blood coagulation enzymes. This family includes enzymes that are present in vertebrates, Drosophila, plants, bacteria, and archaea. All homologs of VKOR contain an active site CXXC motif, which is switched between reduced and disulfide-bonded states during the reaction cycle. In some plant and bacterial homologs, the VKOR domain is fused with domains of the thioredoxin family of oxidoreductases which may function as redox partners in initiating the reduction cascade. Warfarin, a widely used oral anticoagulant used in medicine as well as rodenticides, inhibits the activity of VKOR, resulting in decreased levels of reduced vitamin K, which is required for the function of several clotting factors. However, anticoagulation effect of warfarin is significantly associated with polymorphism of certain genes, including VKORC1. Interestingly, in rodents, an adaptive trait appears to have evolved convergently by selection on new or standing genetic polymorphisms in VKORC1 as well as by adaptive introgressive hybridization between species, likely brought about by human-mediated dispersal. Length = 126

>gnl|CDD|240605 cd12922, VKOR_5, Vitamin K epoxide reductase family in bacteria

 Score = 51.0 bits (123), Expect = 2e-08
 Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 7/86 (8%)

Query: 98  SCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLG-LLLARKSFPIGINESYGRLILLGSST 156
           SCG V+ S  A +FG P P IG+ A+ +V  +G  LLA    P      +   +  G   
Sbjct: 41  SCGSVMQSWQASLFGFPNPLIGLAAFAVVITVGVALLAGARLP----RWFWVGLQAG--L 94

Query: 157 SMAAASAYFLYILSTNFSGATCSYCL 182
           +      ++L   S    GA C YC+
Sbjct: 95  AAGLVFVHWLIYQSLFVIGALCPYCM 120

This family includes vitamin K epoxide reductase (VKOR) mostly present in actinobacteria. VKOR (also named VKORC1) is an integral membrane protein that catalyzes the reduction of vitamin K 2,3-epoxide and vitamin K to vitamin K hydroquinone, an essential co-factor subsequently used in the gamma-carboxylation of glutamic acid residues in blood coagulation enzymes. All homologs of VKOR contain an active site CXXC motif, which is switched between reduced and disulfide-bonded states during the reaction cycle. In some bacterial homologs, the VKOR domain is fused with domains of the thioredoxin family of oxidoreductases which may function as redox partners in initiating the reduction cascade. Length = 133

>gnl|CDD|240603 cd12920, VKOR_3, Vitamin K epoxide reductase family in bacteria

 Score = 46.1 bits (110), Expect = 1e-06
 Identities = 35/134 (26%), Positives = 52/134 (38%), Gaps = 11/134 (8%)

Query: 69  IGGVGFLETTYLSY-----LKLTNSDAFCPIGGA-SCGDVLNSDYAVVFGVPLPFIGMFA 122
           +  +G   +  L+Y     L      +FC I    +C  V  S Y+ + GVP+   G+ A
Sbjct: 6   LALIGLAFSGLLTYHHYGILTDGVGSSFCAINEVVNCDKVAQSPYSAIGGVPIALWGLLA 65

Query: 123 YGLVAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCL 182
           YG +A L LL                L+LL        A      I S    GA C  C 
Sbjct: 66  YGFLAALFLLALISREDSERAAGLLFLVLL----VGLVADLVLGLI-SVTAIGALCILCA 120

Query: 183 TSALLSFSLFFISL 196
            + ++S +L F + 
Sbjct: 121 GTYIVSAALLFGAW 134

This family includes vitamin K epoxide reductase (VKOR) present in proteobacteria and spirochetes. VKOR (also named VKORC1) is an integral membrane protein that catalyzes the reduction of vitamin K 2,3-epoxide and vitamin K to vitamin K hydroquinone, an essential co-factor subsequently used in the gamma-carboxylation of glutamic acid residues in blood coagulation enzymes. All homologs of VKOR contain an active site CXXC motif, which is switched between reduced and disulfide-bonded states during the reaction cycle. In some bacterial homologs, the VKOR domain is fused with domains of the thioredoxin family of oxidoreductases which may function as redox partners in initiating the reduction cascade. Length = 134

>gnl|CDD|184883 PRK14889, PRK14889, VKOR family protein; Provisional

 Score = 43.9 bits (104), Expect = 9e-06
 Identities = 39/142 (27%), Positives = 53/142 (37%), Gaps = 17/142 (11%)

Query: 59  GFSPYGWCAGIGGVGFLETTYLSYLKLTNSDAFCPIGG-ASCGDVLNSDYAVVFGVPLPF 117
            FS  G  A I         YL +  L     FC I    +C  VL+S YA   G+PL +
Sbjct: 14  AFSLVGLIASIAS-------YLLFTLLVKPPPFCTINSVINCSSVLSSPYARFLGIPLDY 66

Query: 118 IGMFAYGLVAVLGLLLAR-KSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGA 176
           +G   +     L LL        +G   S   +I L       A   Y +Y L     GA
Sbjct: 67  LGAAWFSANIALALLGVGTLKRILGRVISLWSIIGL-------AIVPYLVY-LEVFVLGA 118

Query: 177 TCSYCLTSALLSFSLFFISLKV 198
            C YC  + +   + F + L  
Sbjct: 119 ICIYCTIAHVSILAAFILILIK 140

Length = 143

>gnl|CDD|240601 cd12918, VKOR_arc, Vitamin K epoxide reductase family in archaea and some bacteria

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 35/130 (26%), Positives = 56/130 (43%), Gaps = 10/130 (7%)

Query: 68  GIGGVGFLETTYLSYLKLTNSD-AFCPIGG-ASCGDVLNSDYAVVFGVPLPFIGMFAYGL 125
            +  VG L + YL+Y          C I G  +C  VL+S Y+ + GVPL  +G+  + +
Sbjct: 5   ALSLVGLLASAYLTYEHYLKRPPLACTISGVINCEKVLSSPYSRILGVPLAVLGLAWFAV 64

Query: 126 VAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSA 185
           + VL LL A +   +     Y  ++  G +            I      GA C YC  + 
Sbjct: 65  LLVLSLLAALRVRLLLGALLYWSIL--GIAFVPYLVYLELFLI------GAICLYCTVAH 116

Query: 186 LLSFSLFFIS 195
           ++  +LF I 
Sbjct: 117 VIILALFIII 126

This family includes vitamin K epoxide reductase (VKOR) mostly present in archaea and some bacteria. VKOR (also named VKORC1) is an integral membrane protein that catalyzes the reduction of vitamin K 2,3-epoxide and vitamin K to vitamin K hydroquinone, an essential co-factor subsequently used in the gamma-carboxylation of glutamic acid residues in blood coagulation enzymes. All homologs of VKOR contain an active site CXXC motif, which is switched between reduced and disulfide-bonded states during the reaction cycle. In some bacterial homologs, the VKOR domain is fused with domains of the thioredoxin family of oxidoreductases which may function as redox partners in initiating the reduction cascade. Length = 126

>gnl|CDD|240600 cd12917, VKOR_euk, Vitamin K epoxide reductase family in eukaryotes, excluding plants

 Score = 36.4 bits (85), Expect = 0.003
 Identities = 31/120 (25%), Positives = 45/120 (37%), Gaps = 25/120 (20%)

Query: 90  AFCPIGGA-SCGDVLNSDYAVVFG-------------VPLPFIGMFAYGLVAVLGLLLAR 135
           A C I  + SC  V +S Y   FG              P    G+  Y L  +LGL    
Sbjct: 32  ALCDISESISCSKVFSSRYGRGFGLLGLILGKDSILNQPNSVFGIIFYILQLLLGL---- 87

Query: 136 KSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFIS 195
                  N +   L+LL  S      S Y  YIL        C  C+++ +++F L  ++
Sbjct: 88  ------TNSAVAALLLLTLSILSVVGSLYLAYILYFVLK-DFCIVCVSTYVVNFLLLILN 140

This family includes vitamin K epoxide reductase (VKOR) present in bacteria and plant. VKOR (also named VKORC1) is an integral membrane protein that catalyzes the reduction of vitamin K 2,3-epoxide and vitamin K to vitamin K hydroquinone, an essential co-factor subsequently used in the gamma-carboxylation of glutamic acid residues in blood coagulation enzymes. All homologs of VKOR contain an active site CXXC motif, which is switched between reduced and disulfide-bonded states during the reaction cycle. Warfarin, a widely used oral anticoagulant used in medicine as well as rodenticides, inhibits the activity of VKOR, resulting in decreased levels of reduced vitamin K, which is required for the function of several clotting factors. However, anticoagulation effect of warfarin is significantly associated with polymorphism of certain genes, including VKORC1. Interestingly, in rodents, an adaptive trait appears to have evolved convergently by selection on new or standing genetic polymorphisms in VKORC1 as well as by adaptive introgressive hybridization between species, likely brought about by human-mediated dispersal. Length = 140

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	231
smart00756	142	VKc Family of likely enzymes that includes the cat	99.97
PRK14889	143	VKOR family protein; Provisional	99.95
PF07884	137	VKOR: Vitamin K epoxide reductase family; InterPro	99.93
COG4243	156	Predicted membrane protein [Function unknown]	99.9
PRK00611	135	putative disulfide oxidoreductase; Provisional	94.38
PRK03113	139	putative disulfide oxidoreductase; Provisional	94.15
PRK01749	176	disulfide bond formation protein B; Provisional	84.13
PRK02110	169	disulfide bond formation protein B; Provisional	81.69

>smart00756 VKc Family of likely enzymes that includes the catalytic subunit of vitamin K epoxide reductase

Probab=99.97  E-value=2e-29  Score=207.13  Aligned_cols=130  Identities=37%  Similarity=0.543  Sum_probs=107.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhHhcC-----CCCCCCCCC-CCccccccccchhccCCchhHHHHHHHHHHHHHHHHh-hc
Q 026922           63 YGWCAGIGGVGFLETTYLSYLKLTN-----SDAFCPIGG-ASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLLL-AR  135 (231)
Q Consensus        63 ~~wllvLa~iGll~S~YLt~~k~~~-----~~~~Cdin~-isC~~VL~S~yA~lfGiPnallGl~~Y~~vl~Lal~~-~~  135 (231)
                      ..++++++.+|+++|.|++++|.+.     +++.||+|+ +||++|++||||++||+||+++|+++|++++.+++.. .+
T Consensus         5 ~~~~~~l~~iGl~~S~yl~~~~~~~~~~~~~~~~C~~~~~~sC~~Vl~S~~a~~~GiP~s~lG~~~y~~~~~l~~~~~~~   84 (142)
T smart00756        5 RWILLILGLIGLLASLYLTYEKLTLLEDPDYVASCDINPVVSCGKVLSSPYASIFGIPLSLLGIAAYLVVLALAVLGLLG   84 (142)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCCcCCCCCCCCHHHHhcChhHHHcCCchHHHHHHHHHHHHHHHHHHHcc
Confidence            3344677889999999999999742     348999998 9999999999999999999999999999999888874 34


Q ss_pred             ccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHhc
Q 026922          136 KSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKV  198 (231)
Q Consensus       136 ~rl~~~~~~~~~rw~~lgl~~~~a~~svyLlyi~~~~vI~alCpyC~vs~~vti~Lf~~s~~~  198 (231)
                      .+.+++.     ++.+...++.+.++++|++|+|.++ ||++||||+++|++++++|+++..+
T Consensus        85 ~~~~~~~-----~~~l~~~~~~~~~~s~yl~y~~~~v-i~~~C~~C~~~~~~~~~lf~~~~~~  141 (142)
T smart00756       85 VTLPRWT-----WRLLFLGSLAGAVFSVYLIYLLVFV-IKALCLYCILSAVVSISLFILVTIG  141 (142)
T ss_pred             ccchHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH-HccCcHHHHHHHHHHHHHHHHHHhc
Confidence            4555211     1234445677788999999999885 9999999999999999999998765

Bacterial homologues are fused to members of the thioredoxin family of oxidoreductases.

>PRK14889 VKOR family protein; Provisional

Probab=99.95  E-value=5.6e-28  Score=199.52  Aligned_cols=132  Identities=23%  Similarity=0.362  Sum_probs=103.9

Q ss_pred             hhHHH-HHHHHHHHHHHHHHHHhH--hcCCCCCCCCCC-CCccccccccchhccCCchhHHHHHHHHHHHHHHHHhhccc
Q 026922           62 PYGWC-AGIGGVGFLETTYLSYLK--LTNSDAFCPIGG-ASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLLLARKS  137 (231)
Q Consensus        62 ~~~wl-lvLa~iGll~S~YLt~~k--~~~~~~~Cdin~-isC~~VL~S~yA~lfGiPnallGl~~Y~~vl~Lal~~~~~r  137 (231)
                      ..+++ ++++.+|+++|.|++++|  .+++++.||+|+ +||++|++||||++||+||+++|+++|.+++.+++..... 
T Consensus         7 ~~~~ll~~~~~iGl~~S~~l~~~~~~~~~~~~~C~~~~~~~C~~Vl~S~~a~~fGiP~s~lGl~~f~~~l~l~~~~~~~-   85 (143)
T PRK14889          7 GILYLLLAFSLVGLIASIASYLLFTLLVKPPPFCTINSVINCSSVLSSPYARFLGIPLDYLGAAWFSANIALALLGVGT-   85 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHhcCccHHHcCCchHHHHHHHHHHHHHHHHHHHcc-
Confidence            34444 566679999999999877  457789999999 8999999999999999999999999999999988874322 


Q ss_pred             CCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHhccc
Q 026922          138 FPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKVCF  200 (231)
Q Consensus       138 l~~~~~~~~~rw~~lgl~~~~a~~svyLlyi~~~~vI~alCpyC~vs~~vti~Lf~~s~~~~~  200 (231)
                      .+++..+.  .|.|   ...+.+++.|++|+|.++ ||++||||+++|++++++|++++...+
T Consensus        86 ~~~~~~~~--~~~~---~~~g~~~~~yL~y~~~fv-i~a~C~~C~~~~~~~~~~~~~~~~~~~  142 (143)
T PRK14889         86 LKRILGRV--ISLW---SIIGLAIVPYLVYLEVFV-LGAICIYCTIAHVSILAAFILILIKLK  142 (143)
T ss_pred             hhHHHHHH--HHHH---HHHHHHHHHHHHHHHHHH-HccCcHHHHHHHHHHHHHHHHHHHHHh
Confidence            22111111  1222   234457899999998875 999999999999999999998877543

>PF07884 VKOR: Vitamin K epoxide reductase family; InterPro: IPR012932 Vitamin K epoxide reductase (VKOR) recycles reduced vitamin K, which is used subsequently as a co-factor in the gamma-carboxylation of glutamic acid residues in blood coagulation enzymes

Probab=99.93  E-value=6.7e-26  Score=183.67  Aligned_cols=128  Identities=35%  Similarity=0.601  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhHhcCC----CCCCCCCC-CCccccccccchhccCCchhHHHHHHHHHHHHHHHHh-hcccC
Q 026922           65 WCAGIGGVGFLETTYLSYLKLTNS----DAFCPIGG-ASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLLL-ARKSF  138 (231)
Q Consensus        65 wllvLa~iGll~S~YLt~~k~~~~----~~~Cdin~-isC~~VL~S~yA~lfGiPnallGl~~Y~~vl~Lal~~-~~~rl  138 (231)
                      ++.+++.+|+++|.|++++|.+..    ++.||+++ .||++|++||||++||+||+.+|+++|..++.+++.. .+.+.
T Consensus         4 ~~~~l~liGl~~s~~l~~~~~~~~~~~~~~~C~~~~~~~C~~Vl~S~~a~~~Gip~a~~G~~~f~~~l~~~~~~~~~~~~   83 (137)
T PF07884_consen    4 LLLALSLIGLLVSIYLLYVEMGLSRPGYSPFCDIGPRISCDAVLNSPYAKIFGIPLALLGLAFFAFLLLLALLGLARRRL   83 (137)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH-------S-----------SGGGSSSSEETTEEHHHHHHHHHHHHHHHHH-----TT-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCccccCCCCcccCCCHHHHhhccchhhccCCchHHHHHHHHHHHHHHHHHhhccch
Confidence            346788899999999999997644    49999998 9999999999999999999999999999999888763 33344


Q ss_pred             CccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHhc
Q 026922          139 PIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKV  198 (231)
Q Consensus       139 ~~~~~~~~~rw~~lgl~~~~a~~svyLlyi~~~~vI~alCpyC~vs~~vti~Lf~~s~~~  198 (231)
                      +++    . ....+..+.++.++++|+.|+|.++ +|++|+||+++|++++.++++++++
T Consensus        84 ~~~----~-~~~l~~~~~~~~~~~~~l~~~~~~~-i~~~C~~Cl~~~~i~~~l~~l~~~~  137 (137)
T PF07884_consen   84 SRW----L-WLLLFALSFIGLVFSLYLIYIQIFV-IKAWCPYCLVSYAINLALFILSLIR  137 (137)
T ss_dssp             STT----H-HHHHHHHHHHHHHHHHHHHHHHHTT-S----HHHHHHHHHHHHHHHHHHS-
T ss_pred             hHH----H-HHHHHHHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHhcC
Confidence            421    1 1233344556667899999998865 9999999999999999999988764

VKORC1 is a member of a large family of predicted enzymes that are present in vertebrates, Drosophila, plants, bacteria and archaea []. Four cysteine residues and one residue, which is either serine or threonine, are identified as likely active-site residues []. In some plant and bacterial homologues the VKORC1 homologous domain is fused with domains of the thioredoxin family of oxidoreductases []. ; PDB: 3KP9_A.

>COG4243 Predicted membrane protein [Function unknown]

Probab=99.90  E-value=1.8e-23  Score=174.86  Aligned_cols=131  Identities=29%  Similarity=0.459  Sum_probs=101.0

Q ss_pred             hhHHH-HHHHHHHHHHHHHHHHhH---hcCC--CCCCCCCC-CCccccccccchhccCCchhHHHHHHHHHHHHHHHHhh
Q 026922           62 PYGWC-AGIGGVGFLETTYLSYLK---LTNS--DAFCPIGG-ASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLLLA  134 (231)
Q Consensus        62 ~~~wl-lvLa~iGll~S~YLt~~k---~~~~--~~~Cdin~-isC~~VL~S~yA~lfGiPnallGl~~Y~~vl~Lal~~~  134 (231)
                      ..+|. +.++.+|.+.+.-+++++   ++++  ...||.|+ .||++|++||||++|||||+++|+++|.++.++++...
T Consensus        10 ~~~~~~~i~G~i~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~C~sVl~Sp~A~~lGIPl~llG~a~Ft~~~i~all~~   89 (156)
T COG4243          10 ILGWKVLILGVIGGLLSLSLMAEKLRSLLGGGYACSCDANGIVSCSSVLSSPYATILGIPLSLLGIAYFTAVLIAALLGV   89 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceeccccccccccHHHHHcCcchhccCCchHHHHHHHHHHHHHHHHHHH
Confidence            45555 344446555555555555   4443  45678888 99999999999999999999999999999999998753


Q ss_pred             cccCCccccchhhHHHHHHH---HHHHHHHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHhcccc
Q 026922          135 RKSFPIGINESYGRLILLGS---STSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKVCFL  201 (231)
Q Consensus       135 ~~rl~~~~~~~~~rw~~lgl---~~~~a~~svyLlyi~~~~vI~alCpyC~vs~~vti~Lf~~s~~~~~~  201 (231)
                      ...++        ||+|.++   ++.+.+++.||+|++.+ ++|++|+||+++|+.++.+|++...++++
T Consensus        90 ~~~l~--------~~~~~~l~v~~~~g~~f~~yLiY~e~~-~~~alC~YCtv~h~~~l~~~vl~~~~~~~  150 (156)
T COG4243          90 AGVLE--------RWTWIGLLVGSLVGSAFVPYLIYLELF-VIGALCLYCTVAHLSILLLFVLATAGRRW  150 (156)
T ss_pred             HHhHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33344        3444433   46677889999997766 59999999999999999999999988876

>PRK00611 putative disulfide oxidoreductase; Provisional

Probab=94.38  E-value=0.33  Score=40.23  Aligned_cols=60  Identities=22%  Similarity=0.296  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHHHHHhHh-cC-CCCCCCCCCCCccccccccchhccCCchhHHHHHHHHHHHHHHHH
Q 026922           67 AGIGGVGFLETTYLSYLKL-TN-SDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLL  132 (231)
Q Consensus        67 lvLa~iGll~S~YLt~~k~-~~-~~~~Cdin~isC~~VL~S~yA~lfGiPnallGl~~Y~~vl~Lal~  132 (231)
                      +.++..|+.++.|-.+.+. +. ..+.|.  +.+|+++   .| .++|++.|.+-+++|..++++.+.
T Consensus        69 l~~a~~G~~iA~~hv~lQ~~p~~~~~~Cg--~g~Ca~~---~~-~fl~lsiP~wSl~aF~~i~~l~~~  130 (135)
T PRK00611         69 LPLALVGFGIAIYQVCLQEIPGMTLDICG--RVSCSTK---LF-LFGFITMPMASAAAFCAIACLLVL  130 (135)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcccCCCCC--CCCCccc---ch-hcccccHHHHHHHHHHHHHHHHHH
Confidence            3456799999999877664 43 235775  4689998   34 789999999999999887766654

>PRK03113 putative disulfide oxidoreductase; Provisional

Probab=94.15  E-value=0.3  Score=40.57  Aligned_cols=64  Identities=19%  Similarity=0.324  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhH-hc---CCCCCCCCCCCCccccccccchhccCCchhHHHHHHHHHHHHHHHH
Q 026922           64 GWCAGIGGVGFLETTYLSYLK-LT---NSDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLL  132 (231)
Q Consensus        64 ~wllvLa~iGll~S~YLt~~k-~~---~~~~~Cdin~isC~~VL~S~yA~lfGiPnallGl~~Y~~vl~Lal~  132 (231)
                      +..+.++..|+.++.|-.+.+ .+   +..+.|.  +.+|+++.-.+   +.|+|.|.+-+++|.++.++.+.
T Consensus        67 ~y~~l~a~~G~~iA~~h~~lq~~p~~~~~~~~Cg--~~~Ca~~~~~~---~g~lsiP~wSl~~F~~i~~l~~~  134 (139)
T PRK03113         67 SYSLPISSIGACISLYHYAIQKIPFFSAAAASCG--RVPCTGEYINW---FGFVTIPFLALIAFITIAVCSFI  134 (139)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCcccccCCCCC--CCChhhhhHHH---hccCcHHHHHHHHHHHHHHHHHH
Confidence            344556679999999887765 34   2235776  35899865443   56699999999999988777655

>PRK01749 disulfide bond formation protein B; Provisional

Probab=84.13  E-value=8.1  Score=32.96  Aligned_cols=57  Identities=12%  Similarity=0.169  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHHHhHh-cCCCCCCCC------------------CC-CCccccccccchhccCCchhHHHHHHHHHHHHH
Q 026922           70 GGVGFLETTYLSYLKL-TNSDAFCPI------------------GG-ASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVL  129 (231)
Q Consensus        70 a~iGll~S~YLt~~k~-~~~~~~Cdi------------------n~-isC~~VL~S~yA~lfGiPnallGl~~Y~~vl~L  129 (231)
                      +..|..++.|-...+. +++...|+.                  .+ .+|+++.    -++||++.|.+-+++|.+++++
T Consensus        82 al~G~~iA~~hv~~q~~~~~~~~C~~~~~~~~~lpl~~~l~~lf~~~~~C~~~~----w~~lGlSmp~wsll~F~~~~~~  157 (176)
T PRK01749         82 AWKGLQLALEHTDYQLNPSPFNTCDFFVEFPSWLPLDKWLPSVFVASGDCSERQ----WQFLGLEMPQWLVVIFAAYLVV  157 (176)
T ss_pred             HHHHHHHHHHHHHHHcCCCCcccCCCcccccccCCHHHHHHHhcCCCCCCCCcc----hhhcccCHHHHHHHHHHHHHHH
Confidence            3489999988765443 222257863                  24 6898754    4589999999999999888877


Q ss_pred             H
Q 026922          130 G  130 (231)
Q Consensus       130 a  130 (231)
                      +
T Consensus       158 ~  158 (176)
T PRK01749        158 A  158 (176)
T ss_pred             H
Confidence            5

>PRK02110 disulfide bond formation protein B; Provisional

Probab=81.69  E-value=8.3  Score=32.71  Aligned_cols=58  Identities=24%  Similarity=0.371  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHHHhHhcCCCCCCCCC--------------------C-CCccccccccchhccCCchhHHHHHHHHHHHH
Q 026922           70 GGVGFLETTYLSYLKLTNSDAFCPIG--------------------G-ASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAV  128 (231)
Q Consensus        70 a~iGll~S~YLt~~k~~~~~~~Cdin--------------------~-isC~~VL~S~yA~lfGiPnallGl~~Y~~vl~  128 (231)
                      +..|..++.|-...+.. +...|...                    + .+|+++    +-++||++.+.+-+++|.++++
T Consensus        81 a~~G~~ia~~h~~~q~~-p~~~Cg~~~~~~~~~~lpl~~~~~~~f~~~g~C~~~----~w~llGlsmp~wsli~F~~~~l  155 (169)
T PRK02110         81 ALGGIAVAGRHVYIQLN-PGFSCGIDALQPIVDSLPPAKWLPGVFKVDGLCETP----YPPILGLSLPGWALIAFVLIAV  155 (169)
T ss_pred             HHHHHHHHHHHHHHHhC-CCCCCCCCcchHHHHhCCHHHHHHHHhcCCCCccCc----CccccccCHHHHHHHHHHHHHH
Confidence            45899999888877642 22667511                    2 357663    4458999999999999987766


Q ss_pred             HHHH
Q 026922          129 LGLL  132 (231)
Q Consensus       129 Lal~  132 (231)
                      +.+.
T Consensus       156 ~~~~  159 (169)
T PRK02110        156 AVAV  159 (169)
T ss_pred             HHHH
Confidence            5433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	231
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	2e-23

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP} Length = 291

 Score = 94.7 bits (234), Expect = 2e-23
 Identities = 38/152 (25%), Positives = 59/152 (38%), Gaps = 7/152 (4%)

Query: 44  SDSDLRTTPSPSSTSGFSPYGWCAGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCGDVL 103
           S   L+                 A + G+G L T YL+Y KLT   A    G      VL
Sbjct: 3   SYLKLKAQEETWLQR--HSRLILAILAGLGSLLTAYLTYTKLTEQPAAFCTGDGGSDLVL 60

Query: 104 NSDYAVVFGVPLPFIGMFAYGLVAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASA 163
           +S +A   G+P   +G+  +  V  L +L           + +    L G  ++M A   
Sbjct: 61  SSRWAEFLGIPTAAVGLLGFLGVLALAVLPDGLPLV----KRWRWPALFGLVSAMTAFEM 116

Query: 164 YFLYILSTNFSGATCSYCLTSALLSFSLFFIS 195
           Y LY++        C YC T+ +L   L  ++
Sbjct: 117 YMLYLMVAVL-RQFCMYCTTAIILVAGLGLVT 147

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	231
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	99.98
2zuq_A	176	Disulfide bond formation protein B; disulfide bond	88.97

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}

Probab=99.98  E-value=3e-32  Score=245.98  Aligned_cols=158  Identities=24%  Similarity=0.323  Sum_probs=127.9

Q ss_pred             hhHHH-HHHHHHHHHHHHHHHHhHhcC-CCCCCCCCCCCccccccccchhccCCchhHHHHHHHHHHHHHHHHh-hcccC
Q 026922           62 PYGWC-AGIGGVGFLETTYLSYLKLTN-SDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLLL-ARKSF  138 (231)
Q Consensus        62 ~~~wl-lvLa~iGll~S~YLt~~k~~~-~~~~Cdin~isC~~VL~S~yA~lfGiPnallGl~~Y~~vl~Lal~~-~~~rl  138 (231)
                      ..+|+ ++++++|+++|+||+++|+++ +++.||+| .||++|++||||++||+||+++|+++|++++++++.. .+.++
T Consensus        18 ~~~~~~~~l~~iGl~~s~yLt~~~~~~~~~~~C~~~-~sC~~Vl~S~~a~~fGiP~~~~G~~~y~~v~~l~~~~~~~~~~   96 (291)
T 3kp9_A           18 HSRLILAILAGLGSLLTAYLTYTKLTEQPAAFCTGD-GGSDLVLSSRWAEFLGIPTAAVGLLGFLGVLALAVLPDGLPLV   96 (291)
T ss_dssp             SCSHHHHHHHHHHHHHHHHHHHHHHHCCCCSCCCC----CCSGGGSSSSEETTEEHHHHHHHHHHHHHHHHHCC--CTTC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC-CChhhhcccccHhhcCCcHHHHHHHHHHHHHHHHHHHhhccch
Confidence            34444 677889999999999999887 88999987 7999999999999999999999999999999999863 34556


Q ss_pred             CccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHhcccccccchhhhhhHH-HHHH
Q 026922          139 PIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKVCFLCQNFSHFIADSL-LSVD  217 (231)
Q Consensus       139 ~~~~~~~~~rw~~lgl~~~~a~~svyLlyi~~~~vI~alCpyC~vs~~vti~Lf~~s~~~~~~~~~~~~~~~~~l-~~~~  217 (231)
                      +++    . ++.+++.++++.+++.||+|++.++ ||++||||+++|++++++|++++.+++| +|++|.+..++ .++.
T Consensus        97 ~~~----~-~~~l~~~~~~~~~fs~yL~y~~~~v-i~a~C~~C~~~~~i~~~l~~~~~~g~~~-~~~~~~~~~~~~~~~~  169 (291)
T 3kp9_A           97 KRW----R-WPALFGLVSAMTAFEMYMLYLMVAV-LRQFCMYCTTAIILVAGLGLVTVLGHRW-LDGGKLAFSYILVAFL  169 (291)
T ss_dssp             STT----H-HHHHHHHHHHHHHHHHHHHHHHHHT-SCCCCHHHHHHHHHHHHHHHHHHSSCHH-HHCTHHHHHHHHHHHH
T ss_pred             hhH----H-HHHHHHHHHHHHHHHHHHHHHHHHH-HCCCcHHHHHHHHHHHHHHHHHHhCCCh-hhhhHHHHHHHHHHHH
Confidence            532    1 2234444677888999999998875 9999999999999999999999999999 99999999998 6666


Q ss_pred             HHHHhhcccc
Q 026922          218 VVESINYHYR  227 (231)
Q Consensus       218 ~~~~~~~~~~  227 (231)
                      +.......|+
T Consensus       170 ~~~~~~~~~~  179 (291)
T 3kp9_A          170 TLVTTIGVYA  179 (291)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            6443333444

>2zuq_A Disulfide bond formation protein B; disulfide bond, membrane protein, E. coli, cell inner membrane, cell membrane, chaperone, electron transport, membrane; HET: UQ1; 3.30A {Escherichia coli} PDB: 3e9j_C* 2hi7_B* 2leg_B* 2zup_B* 2k73_A 2k74_A*

Probab=88.97  E-value=1.7  Score=35.82  Aligned_cols=61  Identities=15%  Similarity=0.115  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHHHHhH-hcCCCCCCCCC------------------C-CCccccccccchhccCCchhHHHHHHHHHHH
Q 026922           68 GIGGVGFLETTYLSYLK-LTNSDAFCPIG------------------G-ASCGDVLNSDYAVVFGVPLPFIGMFAYGLVA  127 (231)
Q Consensus        68 vLa~iGll~S~YLt~~k-~~~~~~~Cdin------------------~-isC~~VL~S~yA~lfGiPnallGl~~Y~~vl  127 (231)
                      ..+.+|..++.|=+..+ .++..+.|+..                  + .+|+++    +=++||++.|.+-+++|.+++
T Consensus        79 ~~a~~G~~iA~~H~~lq~~p~~~~~C~~~~~~~~~~pl~~~l~~~~~~~g~C~~~----~w~~lGlsmp~wsli~F~~~~  154 (176)
T 2zuq_A           79 YSAFRGVQLTYEHTMLQLYPSPFATCDFMVRFPEWLPLDKWVPQVFVASGDCAER----QWDFLGLEMPQWLLGIFIAYL  154 (176)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCSSCCCCCCC-----CCSSTTCSTTTCCCCCCCSC----CCCSTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCCCCCchhcccCCCHHHHHHHHhcCCCCCccc----cHHHcCCcHHHHHHHHHHHHH
Confidence            34558999998866655 44444789631                  4 688886    335899999999999998888


Q ss_pred             HHHHH
Q 026922          128 VLGLL  132 (231)
Q Consensus       128 ~Lal~  132 (231)
                      ++++.
T Consensus       155 ~~~~~  159 (176)
T 2zuq_A          155 IVAVL  159 (176)
T ss_dssp             HHHTT
T ss_pred             HHHHH
Confidence            77755

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00